Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 1 of 193
Found at i:14507 original size:7 final size:7
Alignment explanation
Indices: 1--14495 Score: 26107
Period size: 7 Copynumber: 2055.4 Consensus size: 7
1 CCCTAAA
1 CCCTAAA
8 CCCTAAA
1 CCCTAAA
15 CCCTAAA
1 CCCTAAA
22 CCCTTAAA
1 CCC-TAAA
30 CCCTAAAA
1 CCCT-AAA
38 CCCTAAA
1 CCCTAAA
45 CCCTAAA
1 CCCTAAA
52 CCCTAAA
1 CCCTAAA
59 -CCTAAA
1 CCCTAAA
65 CCCTAAA
1 CCCTAAA
72 CCCTAAA
1 CCCTAAA
79 CCCTAAA
1 CCCTAAA
86 CCCTAAAA
1 CCCT-AAA
94 CCCTAAA
1 CCCTAAA
101 CCCTAAA
1 CCCTAAA
108 CCCTAAA
1 CCCTAAA
115 CCCTAAA
1 CCCTAAA
122 CCCCTAAA
1 -CCCTAAA
130 CCCTAAA
1 CCCTAAA
137 CCCTAAA
1 CCCTAAA
144 CCCTAAA
1 CCCTAAA
151 CCCTAAA
1 CCCTAAA
158 CCCTAAA
1 CCCTAAA
**
165 -CCTACCT
1 CCCTA-AA
172 CCCTAAAA
1 CCCT-AAA
180 CCCTAAA
1 CCCTAAA
187 CCCTAAA
1 CCCTAAA
194 CCCTAAA
1 CCCTAAA
201 CCCTAAA
1 CCCTAAA
208 CCC--AA
1 CCCTAAA
213 -CCTAAA
1 CCCTAAA
219 CCCTAAA
1 CCCTAAA
226 CCCTAAA
1 CCCTAAA
233 CCCTAAA
1 CCCTAAA
240 CCCTAAA
1 CCCTAAA
247 CCCTAAA
1 CCCTAAA
254 CCCTAAA
1 CCCTAAA
261 CCCTAAA
1 CCCTAAA
268 CCCTAAA
1 CCCTAAA
275 CCCTAAA
1 CCCTAAA
*
282 CCTATAAA
1 CC-CTAAA
290 CCCTAAAA
1 CCCT-AAA
298 CCCTAAA
1 CCCTAAA
305 CCCTAAA
1 CCCTAAA
312 CCCTAAA
1 CCCTAAA
319 CCCTAAA
1 CCCTAAA
326 CCCTAAA
1 CCCTAAA
333 CCCTAAA
1 CCCTAAA
340 CCCTAAA
1 CCCTAAA
347 CCCTAAA
1 CCCTAAA
354 -CCTAAA
1 CCCTAAA
360 CCCTAAA
1 CCCTAAA
367 CCCTAAA
1 CCCTAAA
374 CCCTAAA
1 CCCTAAA
381 CCCTAAA
1 CCCTAAA
388 CCCTAAA
1 CCCTAAA
395 CCCTAAA
1 CCCTAAA
402 CCCT-AA
1 CCCTAAA
408 CCCTAAA
1 CCCTAAA
415 CCCTAAA
1 CCCTAAA
422 CCCTAAAA
1 CCCT-AAA
430 CCCTAAA
1 CCCTAAA
437 CCCTAAA
1 CCCTAAA
444 CCCTAAA
1 CCCTAAA
451 CCCTAAA
1 CCCTAAA
458 CCCTAAA
1 CCCTAAA
465 CCCTAAA
1 CCCTAAA
472 CCCTAAA
1 CCCTAAA
479 -CCTAAA
1 CCCTAAA
485 CCCTAAA
1 CCCTAAA
492 CCCTAAA
1 CCCTAAA
499 CCCTAAA
1 CCCTAAA
506 CCCTAAA
1 CCCTAAA
*
513 CCTTAAA
1 CCCTAAA
520 CCCTAAA
1 CCCTAAA
527 CCCTAAA
1 CCCTAAA
534 CCCTAAA
1 CCCTAAA
541 -CCTAAA
1 CCCTAAA
547 CCCTCTAAA
1 -CC-CTAAA
556 CCCTAAA
1 CCCTAAA
563 CCCTAAA
1 CCCTAAA
570 CCCTAAA
1 CCCTAAA
577 CCCTAAA
1 CCCTAAA
584 CCCT-AA
1 CCCTAAA
590 CCCTAAA
1 CCCTAAA
597 CCCTAAA
1 CCCTAAA
604 CCCTAAA
1 CCCTAAA
611 CCCTAAA
1 CCCTAAA
618 CCCTAAA
1 CCCTAAA
625 CCCT-AA
1 CCCTAAA
631 CCCTAAA
1 CCCTAAA
*
638 ACCTAAA
1 CCCTAAA
645 CCCTAAA
1 CCCTAAA
652 CCCTAAA
1 CCCTAAA
659 CCCTAAAA
1 CCCT-AAA
667 CCCTAAA
1 CCCTAAA
674 CCCTAAA
1 CCCTAAA
681 CCCTAAAA
1 CCCT-AAA
689 CCCTAAA
1 CCCTAAA
696 CCCTAAA
1 CCCTAAA
703 CCCTAAA
1 CCCTAAA
710 CCCTAAA
1 CCCTAAA
717 CCCTAAA
1 CCCTAAA
724 -CCTAAA
1 CCCTAAA
730 CCCTAAA
1 CCCTAAA
737 CCCTAAA
1 CCCTAAA
744 CCCTAAA
1 CCCTAAA
751 CCCTAAA
1 CCCTAAA
758 CCCTTAAA
1 CCC-TAAA
766 CCCTAAA
1 CCCTAAA
773 CCCTAAA
1 CCCTAAA
780 CCCTAAAA
1 CCCT-AAA
788 CCCTAAA
1 CCCTAAA
795 CCCTAAA
1 CCCTAAA
802 CCCCTAAA
1 -CCCTAAA
810 CCCTAAA
1 CCCTAAA
817 CCCTAAA
1 CCCTAAA
824 CCCCCCTAAA
1 ---CCCTAAA
834 CCCTAAA
1 CCCTAAA
841 CCCTAAA
1 CCCTAAA
848 CCCTAAA
1 CCCTAAA
855 CCCT-AA
1 CCCTAAA
861 CCCTAAA
1 CCCTAAA
868 CCCTAAA
1 CCCTAAA
875 CCCTAAA
1 CCCTAAA
882 CCCTAAA
1 CCCTAAA
889 CCCTAAA
1 CCCTAAA
896 CCCTAAA
1 CCCTAAA
903 CCCTAAA
1 CCCTAAA
910 CCCTAAA
1 CCCTAAA
917 CCCTAAA
1 CCCTAAA
924 CCCTAAA
1 CCCTAAA
931 CCCTAAA
1 CCCTAAA
938 CCCTAAA
1 CCCTAAA
945 CCCTAAA
1 CCCTAAA
952 CCCTAAA
1 CCCTAAA
959 CCCTAAA
1 CCCTAAA
966 CCCTAAA
1 CCCTAAA
973 CCCCCCTAAA
1 ---CCCTAAA
983 CCCTAAA
1 CCCTAAA
990 CCCTAAA
1 CCCTAAA
997 CCCTAAA
1 CCCTAAA
1004 CCCTAAA
1 CCCTAAA
1011 CCCTAAA
1 CCCTAAA
1018 CCCTAAA
1 CCCTAAA
1025 CCCTAAA
1 CCCTAAA
1032 CCCTAAA
1 CCCTAAA
1039 CCCTAAA
1 CCCTAAA
1046 CCCTAAA
1 CCCTAAA
1053 CCCTAAA
1 CCCTAAA
1060 CCCTAAA
1 CCCTAAA
1067 CCCTATAAA
1 CCC--TAAA
1076 CCCTAAA
1 CCCTAAA
1083 CCCTAAA
1 CCCTAAA
1090 CCCTAAAA
1 CCCT-AAA
1098 CCCTAAA
1 CCCTAAA
1105 CCCTAAA
1 CCCTAAA
1112 CCCTAAA
1 CCCTAAA
1119 CCCTAAA
1 CCCTAAA
1126 CCCTAAA
1 CCCTAAA
1133 CCCTAAA
1 CCCTAAA
1140 CCCTAAA
1 CCCTAAA
1147 CCCTAAA
1 CCCTAAA
1154 CCCTAAA
1 CCCTAAA
1161 CCCTAAA
1 CCCTAAA
*
1168 CCCCCCAAA
1 --CCCTAAA
1177 CCCTAAA
1 CCCTAAA
1184 CCCTAAA
1 CCCTAAA
1191 CCCTTAAA
1 CCC-TAAA
1199 CCCTAAA
1 CCCTAAA
1206 CCCTAAA
1 CCCTAAA
1213 CCCTTAAA
1 CCC-TAAA
1221 CCCTAAA
1 CCCTAAA
1228 CCCTAAA
1 CCCTAAA
1235 CCCTAAA
1 CCCTAAA
1242 CCCTAAA
1 CCCTAAA
1249 CCCTAAAA
1 CCCT-AAA
1257 CCCTAAA
1 CCCTAAA
1264 CCCTAAA
1 CCCTAAA
1271 CCCTAAAAA
1 CCCT--AAA
1280 CCCTAAA
1 CCCTAAA
1287 CCCTAAA
1 CCCTAAA
1294 CCCTAAA
1 CCCTAAA
1301 CCCTAAA
1 CCCTAAA
1308 CCCTAAA
1 CCCTAAA
1315 CCCTAAA
1 CCCTAAA
1322 CCCCCTAAA
1 --CCCTAAA
1331 CCCTAAAA
1 CCCT-AAA
1339 CCCTAAA
1 CCCTAAA
1346 CCCTAAA
1 CCCTAAA
1353 CCCTAAA
1 CCCTAAA
1360 CCCTAAAA
1 CCCT-AAA
1368 CCCTAAA
1 CCCTAAA
1375 CCCTAAAA
1 CCCT-AAA
1383 CCCTAAA
1 CCCTAAA
1390 CCCTAAA
1 CCCTAAA
1397 CCCTAAA
1 CCCTAAA
1404 CCCTAAA
1 CCCTAAA
1411 CCCTAAA
1 CCCTAAA
1418 CCCTAAAAA
1 CCCT--AAA
1427 CCCTAAA
1 CCCTAAA
1434 CCCTAAAA
1 CCCT-AAA
1442 CCCTAAA
1 CCCTAAA
1449 CCCTAAA
1 CCCTAAA
1456 CCCTAAA
1 CCCTAAA
1463 CCCTAAA
1 CCCTAAA
1470 CCCTAAA
1 CCCTAAA
1477 CCCT-AA
1 CCCTAAA
1483 CCCTAAA
1 CCCTAAA
1490 CCCTAAA
1 CCCTAAA
1497 CCCCTAAAA
1 -CCCT-AAA
1506 CCCTAAA
1 CCCTAAA
1513 CCCTAAA
1 CCCTAAA
1520 CCCTAAA
1 CCCTAAA
1527 CCCTAAA
1 CCCTAAA
1534 CCCTAAA
1 CCCTAAA
1541 CCCTAAA
1 CCCTAAA
1548 CCCTAAA
1 CCCTAAA
1555 CCCTAAAA
1 CCCT-AAA
1563 CCCTAAA
1 CCCTAAA
1570 CCCTAAA
1 CCCTAAA
1577 CCCTAAAA
1 CCCT-AAA
1585 CCCTAAA
1 CCCTAAA
1592 CCCTTAAA
1 CCC-TAAA
1600 CCCTAAA
1 CCCTAAA
1607 CCCTAAA
1 CCCTAAA
1614 CCCTTAAA
1 CCC-TAAA
1622 CCCTAAA
1 CCCTAAA
1629 CCCTAAA
1 CCCTAAA
1636 CCCTAAA
1 CCCTAAA
1643 CCCTAAA
1 CCCTAAA
1650 CCCTAAA
1 CCCTAAA
1657 CCCTAAA
1 CCCTAAA
1664 CCCTAAAACA
1 CCCT--AA-A
1674 CCCTAAA
1 CCCTAAA
1681 -CCTAAA
1 CCCTAAA
1687 CCCTAAA
1 CCCTAAA
1694 CCCTAAA
1 CCCTAAA
1701 CCCTAAA
1 CCCTAAA
1708 CCCTAAA
1 CCCTAAA
1715 CCCTAAA
1 CCCTAAA
1722 CCCTAAA
1 CCCTAAA
1729 CCCTAAA
1 CCCTAAA
1736 CCCTAAA
1 CCCTAAA
1743 CCCTAAA
1 CCCTAAA
1750 CCCTAAA
1 CCCTAAA
1757 CCCTAAAA
1 CCCT-AAA
1765 CCCTAAA
1 CCCTAAA
1772 CCCTAAA
1 CCCTAAA
1779 CCCTAAA
1 CCCTAAA
1786 CCCTAAA
1 CCCTAAA
1793 CCCTAAAA
1 CCCT-AAA
1801 CCCTAAA
1 CCCTAAA
1808 CCCTAAA
1 CCCTAAA
1815 CCCTAAA
1 CCCTAAA
1822 CCCTAAA
1 CCCTAAA
1829 CCCTAAA
1 CCCTAAA
1836 CCCTAAA
1 CCCTAAA
1843 CCCTAAA
1 CCCTAAA
1850 CCCTAAA
1 CCCTAAA
1857 CCCTAAA
1 CCCTAAA
1864 CCCT-AA
1 CCCTAAA
1870 CCCTAAA
1 CCCTAAA
1877 CCCTAAA
1 CCCTAAA
1884 CCCTAAA
1 CCCTAAA
1891 CCCTAAA
1 CCCTAAA
1898 CCCTAAA
1 CCCTAAA
1905 CCCTAAA
1 CCCTAAA
1912 CCCTAAA
1 CCCTAAA
1919 CCCTAAA
1 CCCTAAA
1926 CCCTAAA
1 CCCTAAA
1933 CCCTAAA
1 CCCTAAA
*
1940 CCCTTAA
1 CCCTAAA
1947 CCCTAAA
1 CCCTAAA
1954 CCCTAAA
1 CCCTAAA
1961 CCCTAAAA
1 CCCT-AAA
1969 CCCTAAA
1 CCCTAAA
1976 CCCTAAA
1 CCCTAAA
1983 CCCTAAA
1 CCCTAAA
1990 -CCTAAA
1 CCCTAAA
1996 CCCTAAA
1 CCCTAAA
2003 CCCT-AA
1 CCCTAAA
2009 CCCTAAAA
1 CCCT-AAA
2017 CCCTAAA
1 CCCTAAA
2024 CCCT-AA
1 CCCTAAA
2030 -CCTAAAAA
1 CCCT--AAA
****
2038 AAAAAAA
1 CCCTAAA
*
2045 ACCTAAA
1 CCCTAAA
2052 CCCCCTAAA
1 --CCCTAAA
2061 CCCTAAA
1 CCCTAAA
2068 CCCTAAA
1 CCCTAAA
2075 CCCTAAAA
1 CCCT-AAA
2083 CCCTAAAA
1 CCCT-AAA
2091 CCCTAAA
1 CCCTAAA
2098 CCCTAAAA
1 CCCT-AAA
2106 CCCTAAA
1 CCCTAAA
2113 CCCTAAAA
1 CCCT-AAA
2121 CCCTAAA
1 CCCTAAA
2128 CCCTAAA
1 CCCTAAA
2135 CCCTAAA
1 CCCTAAA
2142 CCCTAAA
1 CCCTAAA
2149 CCCTAAA
1 CCCTAAA
2156 CCCTAAA
1 CCCTAAA
2163 CCCTAAA
1 CCCTAAA
2170 CCCTAAA
1 CCCTAAA
2177 CCCTAAA
1 CCCTAAA
2184 CCCTAAA
1 CCCTAAA
2191 CCCTAAA
1 CCCTAAA
*
2198 CCCAAAAA
1 CCC-TAAA
2206 CCCTAAAAA
1 CCCT--AAA
2215 CCCTAAA
1 CCCTAAA
2222 CCCTAAA
1 CCCTAAA
2229 CCCTAAA
1 CCCTAAA
2236 CCCTAAAAA
1 CCCT--AAA
2245 CCCTAAA
1 CCCTAAA
2252 CCCTAAA
1 CCCTAAA
2259 CCCTAAA
1 CCCTAAA
2266 CCCTAAA
1 CCCTAAA
2273 CCCTAAAA
1 CCCT-AAA
2281 CCCTAAA
1 CCCTAAA
2288 CCCTAAA
1 CCCTAAA
2295 -CCTAAA
1 CCCTAAA
2301 CCCTAAA
1 CCCTAAA
2308 CCCTAAA
1 CCCTAAA
2315 CCCTAAA
1 CCCTAAA
2322 CCCTAAA
1 CCCTAAA
2329 CCCTAAA
1 CCCTAAA
2336 CCCTAAA
1 CCCTAAA
2343 CCCTAAA
1 CCCTAAA
2350 CCCTAAA
1 CCCTAAA
2357 -CCTAAA
1 CCCTAAA
2363 CCCTAAA
1 CCCTAAA
2370 CCCTAAA
1 CCCTAAA
2377 CCCTAAA
1 CCCTAAA
2384 CCCTAAA
1 CCCTAAA
2391 CCCTAAAA
1 CCCT-AAA
2399 CCCTAAA
1 CCCTAAA
2406 CCCTAAA
1 CCCTAAA
2413 CCCCTAAA
1 -CCCTAAA
2421 CCCTAAAA
1 CCCT-AAA
2429 CCCTAAA
1 CCCTAAA
2436 CCCTAAA
1 CCCTAAA
2443 CCCTAAA
1 CCCTAAA
2450 CCCTAAAA
1 CCCT-AAA
2458 CCCTAAA
1 CCCTAAA
2465 CCCTAAA
1 CCCTAAA
2472 CCCTAAA
1 CCCTAAA
2479 CCCTAAAA
1 CCCT-AAA
2487 CCCTAAA
1 CCCTAAA
2494 CCCTAAA
1 CCCTAAA
2501 -CCTAAA
1 CCCTAAA
2507 CCCTAAA
1 CCCTAAA
2514 CCCTAAA
1 CCCTAAA
2521 CCCTAAA
1 CCCTAAA
2528 CCCTAAA
1 CCCTAAA
2535 CCCTAAA
1 CCCTAAA
2542 CCCTAAA
1 CCCTAAA
2549 CCCTAAA
1 CCCTAAA
2556 CCCTAAA
1 CCCTAAA
2563 CCCTAAA
1 CCCTAAA
2570 CCCTAAA
1 CCCTAAA
2577 CCCTAAA
1 CCCTAAA
2584 CCCTAAA
1 CCCTAAA
2591 CCCTAAAA
1 CCCT-AAA
2599 CCCTAAA
1 CCCTAAA
2606 CCCT-AA
1 CCCTAAA
2612 CCCTAAA
1 CCCTAAA
2619 CCCTAAA
1 CCCTAAA
2626 CCCTAAA
1 CCCTAAA
2633 CCCCTAAA
1 -CCCTAAA
2641 CCCTAAA
1 CCCTAAA
2648 CCCTAAA
1 CCCTAAA
2655 CCCTAAA
1 CCCTAAA
2662 CCCTAAA
1 CCCTAAA
2669 CCCTAAA
1 CCCTAAA
2676 CCCT-AA
1 CCCTAAA
2682 CCCTAAA
1 CCCTAAA
2689 CCCTAAAA
1 CCCT-AAA
2697 CCCTAAA
1 CCCTAAA
2704 CCCTAAA
1 CCCTAAA
2711 CCCTAAAA
1 CCCT-AAA
2719 CCCTAAA
1 CCCTAAA
2726 CCCTAAA
1 CCCTAAA
2733 CCCT-AA
1 CCCTAAA
2739 CCCTAAA
1 CCCTAAA
2746 CCCTAAA
1 CCCTAAA
2753 CCCTAAA
1 CCCTAAA
2760 CCCTAAA
1 CCCTAAA
2767 CCCT-AA
1 CCCTAAA
2773 CCCTAAA
1 CCCTAAA
2780 CCCTAAA
1 CCCTAAA
2787 CCCTAAA
1 CCCTAAA
2794 CCCTAAA
1 CCCTAAA
2801 CCCTAAA
1 CCCTAAA
2808 CCCTAAA
1 CCCTAAA
2815 CCCTAAA
1 CCCTAAA
2822 CCCTAAA
1 CCCTAAA
2829 CCCTAAA
1 CCCTAAA
2836 CCCTAAA
1 CCCTAAA
2843 CCCTAAA
1 CCCTAAA
2850 CCCTAAA
1 CCCTAAA
2857 CCCTAAA
1 CCCTAAA
2864 CCCTAAA
1 CCCTAAA
2871 CCCTAAA
1 CCCTAAA
2878 CCCTAAA
1 CCCTAAA
2885 CCCTAAA
1 CCCTAAA
2892 CCCTAAAA
1 CCCT-AAA
2900 CCCTAAA
1 CCCTAAA
2907 CCCTAAA
1 CCCTAAA
2914 CCCTAAA
1 CCCTAAA
2921 CCCTTAAA
1 CCC-TAAA
2929 CCCTAAA
1 CCCTAAA
2936 CCCTTTAAA
1 CCC--TAAA
2945 CCCTAAA
1 CCCTAAA
2952 -CCTAAA
1 CCCTAAA
2958 CCCTAAA
1 CCCTAAA
2965 CCCTAAA
1 CCCTAAA
2972 CCCTAAA
1 CCCTAAA
2979 CCCTAAA
1 CCCTAAA
2986 CCCTAAA
1 CCCTAAA
2993 CCCTAAA
1 CCCTAAA
3000 CCCTAAA
1 CCCTAAA
3007 CCCTAAA
1 CCCTAAA
3014 CCCTAAA
1 CCCTAAA
3021 CCCTAAA
1 CCCTAAA
3028 CCCTAAA
1 CCCTAAA
3035 CCCTAAA
1 CCCTAAA
3042 CCCTAAA
1 CCCTAAA
3049 CCCTAAA
1 CCCTAAA
3056 CCCT-AA
1 CCCTAAA
3062 CCCTAAA
1 CCCTAAA
3069 CCCTAAA
1 CCCTAAA
3076 CCCTAAA
1 CCCTAAA
3083 CCCTAAA
1 CCCTAAA
3090 CCCTAAA
1 CCCTAAA
3097 -CCTAAA
1 CCCTAAA
3103 CCCTAAA
1 CCCTAAA
3110 CCCTAAA
1 CCCTAAA
3117 CCCTAAA
1 CCCTAAA
3124 CCCTAAA
1 CCCTAAA
3131 CCCTAAA
1 CCCTAAA
3138 CCCTAAA
1 CCCTAAA
3145 CCCTAAA
1 CCCTAAA
3152 CCCTAAA
1 CCCTAAA
3159 CCCTAAA
1 CCCTAAA
3166 CCCTAAA
1 CCCTAAA
3173 CCCTAAA
1 CCCTAAA
3180 CCCTAAA
1 CCCTAAA
3187 CCCTAAA
1 CCCTAAA
3194 CCCTAAA
1 CCCTAAA
3201 CCCTAAA
1 CCCTAAA
3208 CCCTAAA
1 CCCTAAA
3215 CCCTTAAA
1 CCC-TAAA
3223 CCCTAAAAA
1 CCCT--AAA
3232 CCCTAAA
1 CCCTAAA
3239 CCCTAAA
1 CCCTAAA
3246 CCCTAAA
1 CCCTAAA
3253 CCCTAAA
1 CCCTAAA
3260 CCCTAAA
1 CCCTAAA
3267 CCCTAAA
1 CCCTAAA
3274 CCCTAAA
1 CCCTAAA
3281 CCCTAAA
1 CCCTAAA
3288 CCCTAAA
1 CCCTAAA
3295 CCCTAAA
1 CCCTAAA
3302 CCCTAAA
1 CCCTAAA
3309 CCCTAAA
1 CCCTAAA
3316 CCCTAAA
1 CCCTAAA
3323 CCCTAAAAA
1 CCCT--AAA
3332 CCCTAAA
1 CCCTAAA
3339 CCCTAAA
1 CCCTAAA
3346 CCCTAAA
1 CCCTAAA
3353 CCCTAAA
1 CCCTAAA
3360 CCCTAAA
1 CCCTAAA
3367 CCCTAAAA
1 CCCT-AAA
3375 CCCTAAA
1 CCCTAAA
3382 CCCTAAA
1 CCCTAAA
3389 CCCTAAA
1 CCCTAAA
3396 CCCTAAA
1 CCCTAAA
3403 CCCTAAA
1 CCCTAAA
3410 CCCTAAA
1 CCCTAAA
3417 CCCTAAA
1 CCCTAAA
3424 CCCTAAA
1 CCCTAAA
3431 CCCTAAA
1 CCCTAAA
3438 CCCTAAA
1 CCCTAAA
3445 CCCCTAAA
1 -CCCTAAA
3453 CCCTAAA
1 CCCTAAA
3460 CCCTAAA
1 CCCTAAA
3467 CCCTAAA
1 CCCTAAA
3474 CCCTAAA
1 CCCTAAA
3481 CCCTAAA
1 CCCTAAA
3488 CCCTAAAAAA
1 CCCT---AAA
3498 CCCTAAA
1 CCCTAAA
3505 CCCTTAAA
1 CCC-TAAA
3513 CCCTAAA
1 CCCTAAA
3520 CCCTAAA
1 CCCTAAA
3527 CCCTAAA
1 CCCTAAA
3534 CCCTAAA
1 CCCTAAA
3541 CCCTAAA
1 CCCTAAA
3548 CCCTAAA
1 CCCTAAA
3555 CCCTAAA
1 CCCTAAA
3562 CCCTAAA
1 CCCTAAA
3569 -CCTAAA
1 CCCTAAA
3575 CCCTAAAA
1 CCCT-AAA
3583 CCCT-AA
1 CCCTAAA
3589 CCCTAAA
1 CCCTAAA
3596 CCCTAAA
1 CCCTAAA
3603 CCCTAAA
1 CCCTAAA
3610 CCCTAAA
1 CCCTAAA
3617 CCCTAAA
1 CCCTAAA
3624 CCCTAAA
1 CCCTAAA
3631 CCCTAAA
1 CCCTAAA
3638 CCCTAAA
1 CCCTAAA
3645 CCCTAAA
1 CCCTAAA
3652 CCCTAAA
1 CCCTAAA
3659 CCCTAAA
1 CCCTAAA
3666 CCCTAAA
1 CCCTAAA
3673 CCCTAAA
1 CCCTAAA
3680 CCCTAAA
1 CCCTAAA
3687 CCCTAAA
1 CCCTAAA
3694 CCCTAAA
1 CCCTAAA
3701 CCCTAAA
1 CCCTAAA
3708 CCCTAAA
1 CCCTAAA
3715 CCCTAAA
1 CCCTAAA
3722 CCCTAAA
1 CCCTAAA
3729 CCCTAAA
1 CCCTAAA
3736 CCCTAAA
1 CCCTAAA
3743 CCCTAAA
1 CCCTAAA
3750 CCCTAAA
1 CCCTAAA
3757 CCCTAAA
1 CCCTAAA
3764 CCCT-AA
1 CCCTAAA
3770 CCCTAAA
1 CCCTAAA
3777 CCCTAAA
1 CCCTAAA
3784 CCCTAAA
1 CCCTAAA
3791 CCCT--A
1 CCCTAAA
3796 -CCTAAA
1 CCCTAAA
3802 CCCTAAA
1 CCCTAAA
3809 CCCTAAA
1 CCCTAAA
3816 CCCTAAA
1 CCCTAAA
3823 CCCTAAA
1 CCCTAAA
3830 CCCTAAA
1 CCCTAAA
3837 CCCTAAA
1 CCCTAAA
3844 CCCTAAA
1 CCCTAAA
3851 CCCTAAA
1 CCCTAAA
3858 CCCTAAA
1 CCCTAAA
3865 CCCTAAA
1 CCCTAAA
3872 CCCTAAA
1 CCCTAAA
3879 CCCTAAA
1 CCCTAAA
3886 CCCTAAA
1 CCCTAAA
3893 CCCTAAA
1 CCCTAAA
3900 CCCTAAA
1 CCCTAAA
*
3907 CCCTTAA
1 CCCTAAA
3914 CCCTAAA
1 CCCTAAA
3921 CCCT-AA
1 CCCTAAA
3927 CACCTAAA
1 C-CCTAAA
3935 CCCTAAA
1 CCCTAAA
3942 CCCTAAA
1 CCCTAAA
3949 CCCTAAA
1 CCCTAAA
3956 CCCTAAAA
1 CCCT-AAA
3964 CCCTAAA
1 CCCTAAA
3971 CCCTAAA
1 CCCTAAA
3978 CCCTAAA
1 CCCTAAA
3985 CCCTAAA
1 CCCTAAA
3992 CCCTAAA
1 CCCTAAA
3999 -CCTAAA
1 CCCTAAA
4005 CCCTAAA
1 CCCTAAA
4012 CCCTAAA
1 CCCTAAA
4019 CCCTTAAA
1 CCC-TAAA
4027 CCCTAAA
1 CCCTAAA
4034 CCCTAAA
1 CCCTAAA
4041 CCCTAAA
1 CCCTAAA
4048 CCCTAAA
1 CCCTAAA
4055 CCCTAAA
1 CCCTAAA
4062 CCCTAAA
1 CCCTAAA
4069 CCCTAAA
1 CCCTAAA
4076 CCCTAAA
1 CCCTAAA
4083 CCCTAAA
1 CCCTAAA
4090 CCCTAAA
1 CCCTAAA
4097 CCCTAAA
1 CCCTAAA
4104 CCCTAAA
1 CCCTAAA
4111 CCCTAAA
1 CCCTAAA
4118 CCCTAAA
1 CCCTAAA
4125 CCCTAAA
1 CCCTAAA
4132 CCCTAAA
1 CCCTAAA
4139 CCCTAAA
1 CCCTAAA
4146 CCCTAAA
1 CCCTAAA
4153 CCCTAAA
1 CCCTAAA
4160 CCCTAAA
1 CCCTAAA
4167 CCCTAAA
1 CCCTAAA
4174 CCCTAAA
1 CCCTAAA
4181 CCCTAAA
1 CCCTAAA
4188 CCCTAAA
1 CCCTAAA
4195 CCCTAAA
1 CCCTAAA
4202 CCCTAAA
1 CCCTAAA
4209 CCCTAAA
1 CCCTAAA
4216 CCCTAAA
1 CCCTAAA
4223 CCCTAAA
1 CCCTAAA
4230 CCCTAAA
1 CCCTAAA
4237 CCCTAAA
1 CCCTAAA
4244 CCCTAAA
1 CCCTAAA
4251 CCCTAAA
1 CCCTAAA
4258 CCCTAAA
1 CCCTAAA
4265 CCCTAAA
1 CCCTAAA
4272 CCCTAAA
1 CCCTAAA
4279 CCCTAAA
1 CCCTAAA
4286 CCCTAAA
1 CCCTAAA
4293 CCCTAAA
1 CCCTAAA
4300 CCCTAAA
1 CCCTAAA
4307 CCCTAAA
1 CCCTAAA
4314 CCCTAAA
1 CCCTAAA
4321 CCCTAAA
1 CCCTAAA
4328 CCCTAAAA
1 CCCT-AAA
4336 CCCTAAA
1 CCCTAAA
4343 CCCTAAA
1 CCCTAAA
4350 CCCTAAA
1 CCCTAAA
4357 CCCTAAA
1 CCCTAAA
4364 CCCTAAA
1 CCCTAAA
4371 CCCTAAA
1 CCCTAAA
4378 CCCTTAAA
1 CCC-TAAA
4386 CCCTAAA
1 CCCTAAA
4393 CCCTAAA
1 CCCTAAA
4400 CCCTAAA
1 CCCTAAA
4407 CCCTAAA
1 CCCTAAA
4414 CCCTAAA
1 CCCTAAA
4421 CCCT-AA
1 CCCTAAA
4427 CCCTAAA
1 CCCTAAA
4434 CCCTAAA
1 CCCTAAA
4441 CCCTAAA
1 CCCTAAA
4448 CCCTAAA
1 CCCTAAA
4455 CCCTAAA
1 CCCTAAA
4462 CCCTAAA
1 CCCTAAA
4469 CCCTAAA
1 CCCTAAA
4476 CCCTAAA
1 CCCTAAA
4483 CCCTAAA
1 CCCTAAA
4490 CCCT-AA
1 CCCTAAA
4496 CCCTAAA
1 CCCTAAA
4503 CCCTAAA
1 CCCTAAA
4510 CCCTAAA
1 CCCTAAA
4517 CCCTAAA
1 CCCTAAA
4524 CCCTAAA
1 CCCTAAA
4531 CCCTAAA
1 CCCTAAA
4538 CCCTAAA
1 CCCTAAA
4545 CCCT-AA
1 CCCTAAA
4551 CCCTAAA
1 CCCTAAA
4558 CCCTAAA
1 CCCTAAA
4565 CCCTAAA
1 CCCTAAA
4572 CCCTAAA
1 CCCTAAA
4579 CCCTAAA
1 CCCTAAA
4586 CCCTAAA
1 CCCTAAA
4593 CCCTAAA
1 CCCTAAA
4600 CCCTAAA
1 CCCTAAA
4607 CCCTAAA
1 CCCTAAA
4614 CCCTAAA
1 CCCTAAA
4621 CCCTAAA
1 CCCTAAA
4628 CCCTAAA
1 CCCTAAA
4635 CCCTAAA
1 CCCTAAA
4642 CCCTAAA
1 CCCTAAA
4649 CCCTAAA
1 CCCTAAA
4656 CCCTAAA
1 CCCTAAA
4663 CCCTAAA
1 CCCTAAA
4670 CCCTAAA
1 CCCTAAA
4677 CCCTAAA
1 CCCTAAA
4684 CCCTAAA
1 CCCTAAA
4691 CCCTAAA
1 CCCTAAA
4698 CCCTAAA
1 CCCTAAA
4705 CCCTAAA
1 CCCTAAA
4712 CCCTAAA
1 CCCTAAA
4719 CCCTAAA
1 CCCTAAA
4726 CCCTAAA
1 CCCTAAA
4733 CCCTAAA
1 CCCTAAA
4740 CCCTAAA
1 CCCTAAA
4747 CCCTAAA
1 CCCTAAA
4754 CCCTAAA
1 CCCTAAA
4761 CCCTAAAA
1 CCCT-AAA
4769 CCCTAAA
1 CCCTAAA
4776 CCCTAAA
1 CCCTAAA
4783 CCCTAAA
1 CCCTAAA
4790 CCCTAAAA
1 CCCT-AAA
4798 CCCTTAAA
1 CCC-TAAA
4806 CCCTAAA
1 CCCTAAA
4813 CCCT-AA
1 CCCTAAA
*
4819 CCCAAAA
1 CCCTAAA
4826 CCCTAAA
1 CCCTAAA
4833 CCCTAAA
1 CCCTAAA
4840 CCCTAAA
1 CCCTAAA
4847 CCCTAAA
1 CCCTAAA
4854 CCCTAAA
1 CCCTAAA
4861 CCCTAAA
1 CCCTAAA
4868 CCCTAAA
1 CCCTAAA
4875 CCCTAAA
1 CCCTAAA
4882 CCCTAAA
1 CCCTAAA
4889 CCCTAAA
1 CCCTAAA
4896 CCCT-AA
1 CCCTAAA
4902 CCCTAAA
1 CCCTAAA
4909 CCCTAAA
1 CCCTAAA
4916 CCCTAAA
1 CCCTAAA
4923 CCCTAAA
1 CCCTAAA
4930 CCCTAAA
1 CCCTAAA
4937 CCCTAAA
1 CCCTAAA
4944 CCCTAAA
1 CCCTAAA
4951 CCCTAAA
1 CCCTAAA
4958 CCCTAAA
1 CCCTAAA
4965 CCCTAAA
1 CCCTAAA
4972 CCCCTAAA
1 -CCCTAAA
4980 CCCTAAAA
1 CCCT-AAA
4988 CCCTAAA
1 CCCTAAA
4995 CCCTAAA
1 CCCTAAA
5002 CCCTAAA
1 CCCTAAA
5009 CCCTAAA
1 CCCTAAA
5016 CCCTAAA
1 CCCTAAA
5023 CCCCTAAAA
1 -CCCT-AAA
5032 CCCTAAA
1 CCCTAAA
5039 CCCTAAA
1 CCCTAAA
5046 CCCTAAA
1 CCCTAAA
5053 CCCTAAAA
1 CCCT-AAA
5061 CCCTAAA
1 CCCTAAA
5068 CCCTAAA
1 CCCTAAA
5075 CCCT-AA
1 CCCTAAA
5081 CCCTAAA
1 CCCTAAA
5088 CCCTAAA
1 CCCTAAA
5095 CCCTAAAA
1 CCCT-AAA
5103 CCCTAAA
1 CCCTAAA
5110 CCCTAAA
1 CCCTAAA
5117 CCCTAAA
1 CCCTAAA
5124 CCCTAAA
1 CCCTAAA
5131 CCCTAAA
1 CCCTAAA
5138 CCCTAAA
1 CCCTAAA
5145 CCCTAAA
1 CCCTAAA
5152 CCCTAAA
1 CCCTAAA
5159 CCCTAAA
1 CCCTAAA
5166 CCCTAAA
1 CCCTAAA
5173 CCCTAAA
1 CCCTAAA
5180 CCCTAAA
1 CCCTAAA
5187 CCCTAAA
1 CCCTAAA
5194 CCCTAAAA
1 CCCT-AAA
5202 CCCTAAA
1 CCCTAAA
5209 CCCTAAA
1 CCCTAAA
5216 CCCTAAA
1 CCCTAAA
5223 CCCTAAA
1 CCCTAAA
5230 CCCTAAA
1 CCCTAAA
5237 CCCT-AA
1 CCCTAAA
5243 CCCTAAA
1 CCCTAAA
5250 CCCTAAA
1 CCCTAAA
5257 CCCTAAA
1 CCCTAAA
5264 CCCTAAA
1 CCCTAAA
5271 CCCTAAA
1 CCCTAAA
5278 CCCTAAA
1 CCCTAAA
5285 CCCTAAA
1 CCCTAAA
5292 CCCTAAA
1 CCCTAAA
5299 CCCTAAA
1 CCCTAAA
5306 CCCTAAA
1 CCCTAAA
5313 CCCTAAA
1 CCCTAAA
5320 CCCTAAA
1 CCCTAAA
5327 CCCTAAA
1 CCCTAAA
5334 CCCTAAA
1 CCCTAAA
5341 CCCTAAA
1 CCCTAAA
5348 CCCTAAA
1 CCCTAAA
5355 CCCTAAA
1 CCCTAAA
5362 CCCTAAA
1 CCCTAAA
5369 CCCTAAA
1 CCCTAAA
5376 CCCTTAAA
1 CCC-TAAA
5384 CCCTAAA
1 CCCTAAA
5391 CCCTAAA
1 CCCTAAA
5398 CCCTAAA
1 CCCTAAA
5405 CCCTAAA
1 CCCTAAA
5412 CCCTAAA
1 CCCTAAA
5419 CCCCTAAA
1 -CCCTAAA
5427 CCCTAAA
1 CCCTAAA
5434 CCCTAAA
1 CCCTAAA
5441 CCCTAAA
1 CCCTAAA
5448 CCCTAAA
1 CCCTAAA
5455 CCCTAAAA
1 CCCT-AAA
*
5463 CCTTAAA
1 CCCTAAA
5470 CCCTAAA
1 CCCTAAA
5477 CCCTAAA
1 CCCTAAA
5484 CCCTAAA
1 CCCTAAA
5491 CCCTAAA
1 CCCTAAA
5498 CCCTAAA
1 CCCTAAA
5505 CCCTAAA
1 CCCTAAA
5512 CCCTAAAA
1 CCCT-AAA
5520 CCCCTAAA
1 -CCCTAAA
5528 CCCTAAA
1 CCCTAAA
5535 CCCTAAA
1 CCCTAAA
5542 ---TAAA
1 CCCTAAA
5546 CCCTAAA
1 CCCTAAA
5553 CCCTAAA
1 CCCTAAA
5560 CCCTAAA
1 CCCTAAA
5567 CCCTAAAAA
1 CCCT--AAA
5576 CCCTAAA
1 CCCTAAA
5583 CCCTAAA
1 CCCTAAA
5590 CCCTAAA
1 CCCTAAA
5597 CCCTAAA
1 CCCTAAA
5604 CCCTAAA
1 CCCTAAA
5611 CCCTAAA
1 CCCTAAA
5618 CCCTAAA
1 CCCTAAA
5625 CCCTAAA
1 CCCTAAA
5632 CCCTAAA
1 CCCTAAA
5639 CCCTAAA
1 CCCTAAA
5646 CCCT-AA
1 CCCTAAA
5652 CCCTAAA
1 CCCTAAA
5659 CCCTAAA
1 CCCTAAA
5666 CCCTAAA
1 CCCTAAA
5673 CCCTAAA
1 CCCTAAA
5680 CCCTAAA
1 CCCTAAA
5687 CCCTAAA
1 CCCTAAA
5694 CCCTAAA
1 CCCTAAA
5701 CCCTAAA
1 CCCTAAA
5708 CCCTAAA
1 CCCTAAA
5715 CCCTAAA
1 CCCTAAA
5722 CCCTAAA
1 CCCTAAA
5729 CCCTAAA
1 CCCTAAA
5736 CCCTAAA
1 CCCTAAA
5743 CCCTAAA
1 CCCTAAA
5750 CCCT-AA
1 CCCTAAA
5756 CCCTAAA
1 CCCTAAA
5763 CCCTAAA
1 CCCTAAA
5770 CCCTAAA
1 CCCTAAA
5777 CCCTAAA
1 CCCTAAA
5784 CCCTAAA
1 CCCTAAA
5791 CCCTAAAA
1 CCCT-AAA
5799 CCCTAAA
1 CCCTAAA
5806 CCCTTAAA
1 CCC-TAAA
5814 CCCTAAA
1 CCCTAAA
5821 CCCTAAA
1 CCCTAAA
5828 CCCTAAA
1 CCCTAAA
5835 CCCTAAA
1 CCCTAAA
5842 CCCCTAAA
1 -CCCTAAA
5850 CCCTAAA
1 CCCTAAA
5857 CCCTAAA
1 CCCTAAA
5864 CCCTAAA
1 CCCTAAA
5871 CCCTAAA
1 CCCTAAA
5878 CCCTAAA
1 CCCTAAA
5885 CCCTAAA
1 CCCTAAA
5892 CCCTAAA
1 CCCTAAA
5899 CCCTAAA
1 CCCTAAA
5906 CCCTAAA
1 CCCTAAA
5913 CCCTAAA
1 CCCTAAA
5920 CCCTAAAA
1 CCCT-AAA
5928 CCCTAAA
1 CCCTAAA
5935 CCCTAAA
1 CCCTAAA
5942 CCCTAAA
1 CCCTAAA
5949 CCCTAAA
1 CCCTAAA
5956 CCCTAAA
1 CCCTAAA
5963 CCCT-AA
1 CCCTAAA
5969 CCCTAAA
1 CCCTAAA
5976 CCCTAAA
1 CCCTAAA
5983 CCCTAAA
1 CCCTAAA
5990 CCCTAAAA
1 CCCT-AAA
5998 CCCTAAA
1 CCCTAAA
6005 CCCTAAA
1 CCCTAAA
6012 CCCTAAAA
1 CCCT-AAA
6020 CCCTAAA
1 CCCTAAA
6027 CCCTAAA
1 CCCTAAA
6034 CCCTAAAA
1 CCCT-AAA
6042 CCCTAAA
1 CCCTAAA
6049 CCCTAAA
1 CCCTAAA
6056 CCCTAAA
1 CCCTAAA
6063 CCCTAAA
1 CCCTAAA
6070 CCCTAAA
1 CCCTAAA
6077 CCCTAAA
1 CCCTAAA
6084 CCCTAAA
1 CCCTAAA
6091 CCCTAAA
1 CCCTAAA
6098 CCCTAAA
1 CCCTAAA
6105 CCCTAAA
1 CCCTAAA
6112 CCCT-AA
1 CCCTAAA
6118 CCCTAAA
1 CCCTAAA
6125 CCCTAAA
1 CCCTAAA
6132 CCCTAAA
1 CCCTAAA
6139 CCCTAAA
1 CCCTAAA
6146 CCCTAAAA
1 CCCT-AAA
6154 CCCTAAA
1 CCCTAAA
6161 CCCTAAA
1 CCCTAAA
6168 CCCTAAA
1 CCCTAAA
6175 CCCTAAAA
1 CCCT-AAA
6183 CCCT-AA
1 CCCTAAA
6189 CCCTAAA
1 CCCTAAA
6196 CCCTAAAAA
1 CCCT--AAA
6205 CCCTAAA
1 CCCTAAA
6212 CCCTAAA
1 CCCTAAA
6219 CCCTAAA
1 CCCTAAA
6226 CCCTAAA
1 CCCTAAA
6233 CCCTAAA
1 CCCTAAA
6240 CCCTAAA
1 CCCTAAA
6247 CCCCTAAA
1 -CCCTAAA
6255 CCCTAAA
1 CCCTAAA
6262 CCCTAAA
1 CCCTAAA
6269 CCCTAAA
1 CCCTAAA
6276 CCCTAAA
1 CCCTAAA
6283 CCCTAAA
1 CCCTAAA
6290 CCCTAAA
1 CCCTAAA
6297 CCCTAAA
1 CCCTAAA
6304 CCCTAAA
1 CCCTAAA
6311 CCCTAAA
1 CCCTAAA
6318 CCCTAAA
1 CCCTAAA
6325 CCCTAAA
1 CCCTAAA
6332 CCCTAAA
1 CCCTAAA
6339 CCCTAAA
1 CCCTAAA
6346 CCCTAAA
1 CCCTAAA
6353 CCCTAAA
1 CCCTAAA
6360 CCCTAAA
1 CCCTAAA
6367 CCCTAAA
1 CCCTAAA
6374 CCCTAAA
1 CCCTAAA
6381 CCCTAAA
1 CCCTAAA
6388 CCCTAAA
1 CCCTAAA
6395 CCCTAAA
1 CCCTAAA
6402 CCCTAAA
1 CCCTAAA
6409 CCCTAAA
1 CCCTAAA
6416 CCCT-AA
1 CCCTAAA
6422 CCCTAAA
1 CCCTAAA
6429 CCCTAAA
1 CCCTAAA
6436 CCCTAAA
1 CCCTAAA
6443 CCCTAAA
1 CCCTAAA
6450 CCCTAAA
1 CCCTAAA
6457 CCCTAAA
1 CCCTAAA
6464 CCCTAAA
1 CCCTAAA
6471 CCCTAAA
1 CCCTAAA
6478 CCCTAAA
1 CCCTAAA
6485 CCCTAAA
1 CCCTAAA
6492 CCCTCTAAAAA
1 -CC-CT--AAA
6503 CCCTAAA
1 CCCTAAA
6510 CCCTAAA
1 CCCTAAA
6517 CCCTAAA
1 CCCTAAA
6524 CCCTAAA
1 CCCTAAA
6531 CCCTAAA
1 CCCTAAA
6538 CCCTAAA
1 CCCTAAA
6545 CCCTAAA
1 CCCTAAA
6552 CCCTAAA
1 CCCTAAA
6559 CCCTAAA
1 CCCTAAA
6566 CCCTAAA
1 CCCTAAA
6573 CCCTAAA
1 CCCTAAA
6580 CCCTAAA
1 CCCTAAA
6587 CCCTAAA
1 CCCTAAA
6594 CCCTAAAA
1 CCCT-AAA
6602 CCCTAAA
1 CCCTAAA
6609 CCCTAAA
1 CCCTAAA
6616 CCCTAAA
1 CCCTAAA
6623 CCCTAAA
1 CCCTAAA
6630 CCCTAAA
1 CCCTAAA
6637 CCCTAAA
1 CCCTAAA
6644 CCCTAAA
1 CCCTAAA
6651 CCCTAAA
1 CCCTAAA
6658 CCCTAAA
1 CCCTAAA
6665 CCCTAAA
1 CCCTAAA
6672 CCCTAAA
1 CCCTAAA
6679 CCCTAAA
1 CCCTAAA
6686 CCCTAAA
1 CCCTAAA
6693 CCCTAAA
1 CCCTAAA
6700 CCCTAAA
1 CCCTAAA
6707 CCCTAAA
1 CCCTAAA
6714 CCCTAAA
1 CCCTAAA
6721 CCCTAAA
1 CCCTAAA
6728 CCCTAAA
1 CCCTAAA
6735 CCCTAAA
1 CCCTAAA
6742 CCCTAAA
1 CCCTAAA
6749 CCCTAAA
1 CCCTAAA
6756 CCCTAAA
1 CCCTAAA
6763 CCCTAAA
1 CCCTAAA
6770 CCCTAAA
1 CCCTAAA
6777 CCCTATAAA
1 CCC--TAAA
6786 CCCTAAA
1 CCCTAAA
6793 CCCTAAA
1 CCCTAAA
6800 CCCTAAA
1 CCCTAAA
6807 CCCTAAA
1 CCCTAAA
6814 CCCTAAA
1 CCCTAAA
6821 CCCTAAA
1 CCCTAAA
6828 CCCTAAA
1 CCCTAAA
6835 CCCTAAA
1 CCCTAAA
6842 CCCTAAA
1 CCCTAAA
6849 CCCTAAA
1 CCCTAAA
6856 CCCTAAA
1 CCCTAAA
6863 CCCTAAA
1 CCCTAAA
6870 CCCTAAA
1 CCCTAAA
6877 CCCTAAA
1 CCCTAAA
6884 CCCTAAA
1 CCCTAAA
6891 CCCTAAA
1 CCCTAAA
6898 CCCTAAA
1 CCCTAAA
6905 CCCTAAA
1 CCCTAAA
6912 CCCTAAA
1 CCCTAAA
6919 CCCTAAA
1 CCCTAAA
6926 CCCTAAAA
1 CCCT-AAA
6934 CCCTAAA
1 CCCTAAA
6941 CCCTAAA
1 CCCTAAA
6948 CCCTAAA
1 CCCTAAA
6955 CCCTAAA
1 CCCTAAA
6962 CCCTAAA
1 CCCTAAA
6969 CCCTAAA
1 CCCTAAA
6976 CCCTAAA
1 CCCTAAA
6983 CCCTAAA
1 CCCTAAA
6990 CCCTAAA
1 CCCTAAA
6997 CCCTAAA
1 CCCTAAA
7004 CCCTAAA
1 CCCTAAA
7011 CCCTAAA
1 CCCTAAA
7018 CCCTAAA
1 CCCTAAA
7025 CCCTAAA
1 CCCTAAA
7032 CCCTAAA
1 CCCTAAA
7039 CCCTAAA
1 CCCTAAA
7046 CCCTAAA
1 CCCTAAA
7053 CCCTAAA
1 CCCTAAA
7060 CCCTAAA
1 CCCTAAA
7067 CCCT--A
1 CCCTAAA
7072 CCCTAAA
1 CCCTAAA
7079 CCCTAAA
1 CCCTAAA
7086 CCCTAAAA
1 CCCT-AAA
7094 CCCTAAA
1 CCCTAAA
7101 CCCTAAA
1 CCCTAAA
7108 CCCTAAA
1 CCCTAAA
7115 CCCTAAA
1 CCCTAAA
7122 CCCTAAA
1 CCCTAAA
7129 CCCTAAA
1 CCCTAAA
7136 CCCCCTAAA
1 --CCCTAAA
7145 CCCTAAA
1 CCCTAAA
7152 CCCTAAA
1 CCCTAAA
7159 CCCTAAA
1 CCCTAAA
7166 CCCTAAA
1 CCCTAAA
7173 CCCTAAA
1 CCCTAAA
7180 CCCTAAA
1 CCCTAAA
7187 CCCTAAA
1 CCCTAAA
7194 CCCTAAA
1 CCCTAAA
7201 CCCTAAA
1 CCCTAAA
7208 CCCTAAAAAA
1 CCCT---AAA
7218 CCCTAAA
1 CCCTAAA
7225 CCCCCCTAAA
1 ---CCCTAAA
7235 CCCTAAA
1 CCCTAAA
7242 CCCTAAA
1 CCCTAAA
7249 CCCTAAAA
1 CCCT-AAA
7257 CCCTAAA
1 CCCTAAA
7264 CCCTAAA
1 CCCTAAA
7271 CCCTAAA
1 CCCTAAA
7278 CCCTAAA
1 CCCTAAA
7285 CCCTAAA
1 CCCTAAA
7292 CCCTAAAA
1 CCCT-AAA
7300 CCCTAAA
1 CCCTAAA
7307 CCCTAAA
1 CCCTAAA
7314 CCCTAAA
1 CCCTAAA
7321 CCCTAAA
1 CCCTAAA
7328 CCCTAAA
1 CCCTAAA
7335 CCCTAAA
1 CCCTAAA
7342 CCCTAAA
1 CCCTAAA
7349 CCCTAAA
1 CCCTAAA
7356 CCCTAAA
1 CCCTAAA
7363 CCCTAAA
1 CCCTAAA
7370 CCCTAAA
1 CCCTAAA
7377 CCCTAAA
1 CCCTAAA
7384 CCCT-AA
1 CCCTAAA
7390 CCCTAAAA
1 CCCT-AAA
7398 CCCTAAA
1 CCCTAAA
7405 CCCTAAA
1 CCCTAAA
7412 CCCTAAA
1 CCCTAAA
7419 CCCTAAA
1 CCCTAAA
7426 CCCTAAA
1 CCCTAAA
7433 CCCTAAAA
1 CCCT-AAA
7441 CCCTAAA
1 CCCTAAA
7448 CCCTAAA
1 CCCTAAA
7455 CCCTAAA
1 CCCTAAA
7462 CCCTAAA
1 CCCTAAA
7469 CCCT-AA
1 CCCTAAA
7475 -CCTAAA
1 CCCTAAA
7481 CCCTAAA
1 CCCTAAA
7488 CCCTAAA
1 CCCTAAA
7495 CCCTAAA
1 CCCTAAA
7502 CCCTAAA
1 CCCTAAA
7509 CCCTAAA
1 CCCTAAA
7516 CCCTAAA
1 CCCTAAA
7523 CCCTAAA
1 CCCTAAA
*
7530 CCCTAACC
1 CCCTAA-A
7538 CCCTAAAA
1 CCCT-AAA
7546 CCCTAAA
1 CCCTAAA
7553 CCCTAAA
1 CCCTAAA
*
7560 CCCTAAC
1 CCCTAAA
7567 CCCTAAA
1 CCCTAAA
7574 CCCTAAA
1 CCCTAAA
7581 CCCTAAA
1 CCCTAAA
*
7588 ---AAAA
1 CCCTAAA
7592 CCCTAAA
1 CCCTAAA
7599 CCCTAAA
1 CCCTAAA
7606 CCCTAAA
1 CCCTAAA
7613 CCCTAAA
1 CCCTAAA
7620 CCCTAAA
1 CCCTAAA
7627 CCCCTAAA
1 -CCCTAAA
7635 CCCTAAA
1 CCCTAAA
7642 CCCTAAA
1 CCCTAAA
7649 CCCTAAA
1 CCCTAAA
7656 CCCTAAA
1 CCCTAAA
7663 CCCTAAA
1 CCCTAAA
7670 CCCTAAAAA
1 CCCT--AAA
7679 CCCTAAA
1 CCCTAAA
7686 CCCTAAA
1 CCCTAAA
7693 CCCTAAA
1 CCCTAAA
7700 CCCTAAA
1 CCCTAAA
7707 CCCTAAA
1 CCCTAAA
7714 CCCTAAA
1 CCCTAAA
7721 CCCTAAA
1 CCCTAAA
7728 CCCTAAAA
1 CCCT-AAA
7736 CCCT--A
1 CCCTAAA
7741 CCCTAAA
1 CCCTAAA
7748 -CCTAAA
1 CCCTAAA
7754 CCCTAAAA
1 CCCT-AAA
7762 CCCTAAA
1 CCCTAAA
7769 --CTAAA
1 CCCTAAA
7774 CCCTAAA
1 CCCTAAA
7781 CCCTAAA
1 CCCTAAA
7788 CCCTAAA
1 CCCTAAA
7795 CCCTAAAA
1 CCCT-AAA
7803 CCCTAAA
1 CCCTAAA
7810 CCCTAAA
1 CCCTAAA
7817 CCCTAAA
1 CCCTAAA
7824 CCCTAAA
1 CCCTAAA
7831 CCCTAAA
1 CCCTAAA
7838 CCCTAAA
1 CCCTAAA
7845 CCCT-AA
1 CCCTAAA
7851 CCCTAAA
1 CCCTAAA
7858 CCCTAAA
1 CCCTAAA
7865 CCCTAAA
1 CCCTAAA
7872 CCCTCCTAAA
1 --C-CCTAAA
7882 CCCTAAA
1 CCCTAAA
7889 CCCTAAA
1 CCCTAAA
7896 CCCTAAA
1 CCCTAAA
7903 CCCT-AA
1 CCCTAAA
7909 CCCTAAA
1 CCCTAAA
7916 CCCTAAA
1 CCCTAAA
7923 CCCTAAA
1 CCCTAAA
7930 CCCTAAA
1 CCCTAAA
7937 CCCTAAA
1 CCCTAAA
7944 CCCTAAA
1 CCCTAAA
7951 CCCT-AA
1 CCCTAAA
7957 CCCTAAA
1 CCCTAAA
7964 CCCTAAA
1 CCCTAAA
7971 CCCTAAA
1 CCCTAAA
7978 CCCTAAA
1 CCCTAAA
7985 CCCTAAA
1 CCCTAAA
7992 CCCTAAA
1 CCCTAAA
7999 CCCTAAA
1 CCCTAAA
8006 CCCTAAA
1 CCCTAAA
8013 CCCTAAA
1 CCCTAAA
8020 CCCTAAA
1 CCCTAAA
8027 CCCTAAA
1 CCCTAAA
8034 CCCTAAA
1 CCCTAAA
8041 CCCTAAA
1 CCCTAAA
8048 CCCTAAA
1 CCCTAAA
8055 CCCTAAA
1 CCCTAAA
8062 CCCTAAA
1 CCCTAAA
8069 CCCTAAA
1 CCCTAAA
8076 CCCTAAA
1 CCCTAAA
8083 CCCTAAA
1 CCCTAAA
8090 CCCTAAA
1 CCCTAAA
8097 CCCTAAAAAA
1 CCCT---AAA
8107 CCCTAAA
1 CCCTAAA
8114 CCCTATAA
1 CCCTA-AA
*
8122 ACCTAAA
1 CCCTAAA
8129 CCCTAAA
1 CCCTAAA
8136 CCCTAAA
1 CCCTAAA
8143 CCCTAAA
1 CCCTAAA
8150 CCCTAAAAA
1 CCCT--AAA
8159 CCCTAAA
1 CCCTAAA
8166 CCCTAAA
1 CCCTAAA
8173 CCCTAAA
1 CCCTAAA
8180 CCCTAAA
1 CCCTAAA
8187 CCCTAAAA
1 CCCT-AAA
8195 CCCTAAA
1 CCCTAAA
8202 CCCTAAA
1 CCCTAAA
8209 CCCTAAA
1 CCCTAAA
8216 -CCTAAA
1 CCCTAAA
8222 CCCTAAA
1 CCCTAAA
8229 CCCTAAA
1 CCCTAAA
8236 CCCCTAAA
1 -CCCTAAA
8244 CCCTAAA
1 CCCTAAA
8251 CCCTAAA
1 CCCTAAA
8258 CCCTAAA
1 CCCTAAA
8265 CCCTAAA
1 CCCTAAA
*
8272 ACCTAAA
1 CCCTAAA
8279 CCCTAAA
1 CCCTAAA
8286 CCCTAAA
1 CCCTAAA
8293 CCCTAAA
1 CCCTAAA
8300 CCCTAAA
1 CCCTAAA
8307 CCCTAAA
1 CCCTAAA
8314 CCCTAAA
1 CCCTAAA
8321 CCCTAAA
1 CCCTAAA
8328 CCCTAAA
1 CCCTAAA
8335 CCCTAAA
1 CCCTAAA
8342 CCCT-AA
1 CCCTAAA
8348 CCCTAAAAA
1 CCCT--AAA
8357 CCCTAAA
1 CCCTAAA
8364 CCCTAAA
1 CCCTAAA
8371 CCCTAAA
1 CCCTAAA
8378 CCCCTAAA
1 -CCCTAAA
*
8386 CCCAAAAA
1 CCC-TAAA
8394 CCCTAAA
1 CCCTAAA
8401 CCCT-AA
1 CCCTAAA
8407 CCCTAAA
1 CCCTAAA
8414 CCCTAAA
1 CCCTAAA
8421 CCCTAAA
1 CCCTAAA
8428 CCCCCTAAA
1 --CCCTAAA
8437 CCCTAAA
1 CCCTAAA
8444 CCCTAAA
1 CCCTAAA
8451 CCCTAAA
1 CCCTAAA
8458 -CCTAAAA
1 CCCT-AAA
8465 CCCTAAA
1 CCCTAAA
8472 CCCTAAA
1 CCCTAAA
8479 CCCTAAA
1 CCCTAAA
8486 CCCTAAAAAA
1 CCCT---AAA
8496 CCCTAAA
1 CCCTAAA
8503 ---TAAA
1 CCCTAAA
8507 CCCTAAA
1 CCCTAAA
8514 CCCTAAA
1 CCCTAAA
8521 CCCTAAA
1 CCCTAAA
8528 CCCTAAA
1 CCCTAAA
8535 CCCTAAA
1 CCCTAAA
8542 CCCTAAA
1 CCCTAAA
8549 CCCTAAA
1 CCCTAAA
8556 CCCTAAAAAA
1 CCCT---AAA
8566 CCCTAAA
1 CCCTAAA
8573 CCCTAAA
1 CCCTAAA
8580 CCCT-AA
1 CCCTAAA
8586 CCCTAAA
1 CCCTAAA
8593 CCCTAAA
1 CCCTAAA
8600 CCCTAAA
1 CCCTAAA
8607 CCCTAAA
1 CCCTAAA
8614 CCCTAAA
1 CCCTAAA
8621 CCCTAAA
1 CCCTAAA
8628 CCCTAAA
1 CCCTAAA
8635 CCCTAAA
1 CCCTAAA
8642 CCCTAAA
1 CCCTAAA
8649 CCCTAAA
1 CCCTAAA
8656 CCCTAAA
1 CCCTAAA
8663 CCCTAAA
1 CCCTAAA
8670 CCCTAAA
1 CCCTAAA
8677 CAACCTAAAA
1 C--CCT-AAA
8687 CCCTAAA
1 CCCTAAA
8694 CCCTAAA
1 CCCTAAA
8701 CCCTAAA
1 CCCTAAA
8708 CCCTAAA
1 CCCTAAA
8715 CCCTAAA
1 CCCTAAA
8722 CCCTAAA
1 CCCTAAA
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13107 CCCTAAA
1 CCCTAAA
13114 CCCTAAA
1 CCCTAAA
13121 CCCTAAA
1 CCCTAAA
13128 CCCTAAA
1 CCCTAAA
13135 CCCTAAA
1 CCCTAAA
13142 CCCTAAA
1 CCCTAAA
13149 CCCTAAA
1 CCCTAAA
13156 CCCTAAA
1 CCCTAAA
13163 CCCTAAA
1 CCCTAAA
13170 CCCTAAA
1 CCCTAAA
13177 CCCTAAA
1 CCCTAAA
13184 CCCTAAA
1 CCCTAAA
13191 CCCTAAA
1 CCCTAAA
13198 CCCTAAA
1 CCCTAAA
13205 CCCTAAA
1 CCCTAAA
13212 CCCTAAA
1 CCCTAAA
13219 CCCTAAA
1 CCCTAAA
13226 CCCTAAA
1 CCCTAAA
13233 CCCTAAA
1 CCCTAAA
13240 CCCTAAA
1 CCCTAAA
13247 CCCTAAA
1 CCCTAAA
13254 CCCTAAA
1 CCCTAAA
13261 CCCTAAA
1 CCCTAAA
13268 CCCTAAA
1 CCCTAAA
13275 CCCTAAA
1 CCCTAAA
13282 CCCTAAA
1 CCCTAAA
13289 CCCTAAA
1 CCCTAAA
13296 CCCTAAA
1 CCCTAAA
13303 CCCTAAA
1 CCCTAAA
13310 CCCTAAA
1 CCCTAAA
13317 CCCTAAA
1 CCCTAAA
13324 CCCTAAA
1 CCCTAAA
13331 CCCTAAA
1 CCCTAAA
13338 CCCTAAA
1 CCCTAAA
13345 CCCTAAA
1 CCCTAAA
13352 CCCTAAA
1 CCCTAAA
13359 CCCTAAA
1 CCCTAAA
13366 CCCTAAA
1 CCCTAAA
13373 CCCTAAA
1 CCCTAAA
13380 CCCTAAA
1 CCCTAAA
13387 CCCTAAA
1 CCCTAAA
13394 CCCTAAA
1 CCCTAAA
13401 CCCTAAA
1 CCCTAAA
13408 CCCTAAA
1 CCCTAAA
13415 CCCTAAA
1 CCCTAAA
13422 CCCTAAA
1 CCCTAAA
13429 CCCTAAA
1 CCCTAAA
13436 CCCTAAA
1 CCCTAAA
13443 CCCTAAA
1 CCCTAAA
13450 CCCTAAA
1 CCCTAAA
13457 CCCTAAA
1 CCCTAAA
13464 CCCTAAA
1 CCCTAAA
13471 CCCTAAA
1 CCCTAAA
13478 CCCTAAA
1 CCCTAAA
13485 CCCTAAA
1 CCCTAAA
13492 CCCTAAA
1 CCCTAAA
13499 CCCTAAA
1 CCCTAAA
13506 CCCTAAA
1 CCCTAAA
13513 CCCTAAA
1 CCCTAAA
13520 CCCTAAA
1 CCCTAAA
13527 CCCTAAA
1 CCCTAAA
13534 CCCTAAA
1 CCCTAAA
13541 CCCTAAA
1 CCCTAAA
13548 CCCTAAA
1 CCCTAAA
13555 CCCTAAA
1 CCCTAAA
13562 CCCTAAA
1 CCCTAAA
13569 CCCTAAA
1 CCCTAAA
13576 CCCTAAA
1 CCCTAAA
13583 CCCTAAA
1 CCCTAAA
13590 CCCTAAA
1 CCCTAAA
13597 CCCTAAA
1 CCCTAAA
13604 CCCTAAA
1 CCCTAAA
13611 CCCTAAA
1 CCCTAAA
13618 CCCTAAA
1 CCCTAAA
13625 CCCTAAA
1 CCCTAAA
13632 CCCTAAA
1 CCCTAAA
13639 CCCTAAA
1 CCCTAAA
13646 CCCTAAA
1 CCCTAAA
13653 CCCTAAA
1 CCCTAAA
13660 CCCTAAA
1 CCCTAAA
13667 CCCTAAA
1 CCCTAAA
13674 CCCTAAA
1 CCCTAAA
13681 CCCTAAA
1 CCCTAAA
13688 CCCTAAA
1 CCCTAAA
13695 CCCTAAA
1 CCCTAAA
13702 CCCTAAA
1 CCCTAAA
13709 CCCTAAA
1 CCCTAAA
13716 CCCTAAA
1 CCCTAAA
13723 CCCTAAA
1 CCCTAAA
13730 CCCTAAA
1 CCCTAAA
13737 CCCTAAA
1 CCCTAAA
13744 CCCTAAA
1 CCCTAAA
13751 CCCTAAA
1 CCCTAAA
13758 CCCTAAA
1 CCCTAAA
13765 CCCTAAA
1 CCCTAAA
13772 CCCTAAA
1 CCCTAAA
13779 CCCTAAA
1 CCCTAAA
13786 CCCTAAA
1 CCCTAAA
13793 CCCTAAA
1 CCCTAAA
13800 CCCTAAA
1 CCCTAAA
13807 CCCTAAA
1 CCCTAAA
13814 CCCTAAA
1 CCCTAAA
13821 CCCTAAA
1 CCCTAAA
13828 CCCTAAA
1 CCCTAAA
13835 CCCTAAA
1 CCCTAAA
13842 CCCTAAA
1 CCCTAAA
13849 CCCTAAA
1 CCCTAAA
13856 CCCTAAA
1 CCCTAAA
13863 CCCTAAA
1 CCCTAAA
13870 CCCTAAA
1 CCCTAAA
13877 CCCTAAA
1 CCCTAAA
13884 CCCTAAA
1 CCCTAAA
13891 CCCTAAA
1 CCCTAAA
13898 CCCTAAA
1 CCCTAAA
13905 CCCTAAA
1 CCCTAAA
13912 CCCTAAA
1 CCCTAAA
13919 CCCTAAA
1 CCCTAAA
13926 CCCTAAA
1 CCCTAAA
13933 CCCTAAAA
1 CCCT-AAA
13941 CCCTAAA
1 CCCTAAA
13948 CCCTAAA
1 CCCTAAA
13955 CCCTAAA
1 CCCTAAA
13962 CCCTAAA
1 CCCTAAA
13969 CCCTAAA
1 CCCTAAA
13976 CCCTAAA
1 CCCTAAA
13983 CCCTAAA
1 CCCTAAA
13990 CCCTAAA
1 CCCTAAA
13997 CCCTAAA
1 CCCTAAA
14004 CCCTAAA
1 CCCTAAA
14011 CCCTAAA
1 CCCTAAA
14018 CCCTAAA
1 CCCTAAA
14025 CCCTAAA
1 CCCTAAA
14032 CCCTAAA
1 CCCTAAA
14039 CCCTAAA
1 CCCTAAA
14046 CCCTAAA
1 CCCTAAA
14053 CCCTAAA
1 CCCTAAA
14060 CCCTAAA
1 CCCTAAA
14067 CCCTAAA
1 CCCTAAA
14074 CCCTAAA
1 CCCTAAA
14081 CCCTAAA
1 CCCTAAA
14088 CCCTAAA
1 CCCTAAA
14095 CCCTAAA
1 CCCTAAA
14102 CCCTAAA
1 CCCTAAA
14109 CCCTAAA
1 CCCTAAA
14116 CCCTAAA
1 CCCTAAA
14123 CCCTAAA
1 CCCTAAA
14130 CCCTAAA
1 CCCTAAA
14137 CCCTAAA
1 CCCTAAA
14144 CCCTAAA
1 CCCTAAA
14151 CCCTAAA
1 CCCTAAA
14158 CCCTAAA
1 CCCTAAA
14165 CCCTAAA
1 CCCTAAA
14172 CCCTAAA
1 CCCTAAA
14179 CCCTAAA
1 CCCTAAA
14186 CCCTAAA
1 CCCTAAA
14193 CCCTAAA
1 CCCTAAA
14200 CCCTAAA
1 CCCTAAA
14207 CCCTAAA
1 CCCTAAA
14214 CCCTAAA
1 CCCTAAA
14221 CCCTAAA
1 CCCTAAA
14228 CCCTAAA
1 CCCTAAA
14235 CCCTAAA
1 CCCTAAA
14242 CCCTAAA
1 CCCTAAA
14249 CCCTAAA
1 CCCTAAA
14256 CCCTAAA
1 CCCTAAA
14263 CCCTAAA
1 CCCTAAA
14270 CCCTAAA
1 CCCTAAA
14277 CCCTAAA
1 CCCTAAA
14284 CCCTAAA
1 CCCTAAA
14291 CCCTAAA
1 CCCTAAA
14298 CCCTAAA
1 CCCTAAA
14305 CCCTAAA
1 CCCTAAA
14312 CCCTAAA
1 CCCTAAA
14319 CCCTAAA
1 CCCTAAA
14326 CCCTAAA
1 CCCTAAA
14333 CCCTAAA
1 CCCTAAA
14340 CCCTAAA
1 CCCTAAA
14347 CCCTAAA
1 CCCTAAA
14354 CCCTAAA
1 CCCTAAA
14361 CCCTAAA
1 CCCTAAA
14368 CCCTAAA
1 CCCTAAA
14375 CCCTAAA
1 CCCTAAA
14382 CCCTAAA
1 CCCTAAA
14389 CCCTAAA
1 CCCTAAA
14396 CCCTAAA
1 CCCTAAA
14403 CCCTAAA
1 CCCTAAA
14410 CCCTAAA
1 CCCTAAA
*
14417 CCCCAAA
1 CCCTAAA
*
14424 CCCAAAA
1 CCCTAAA
*
14431 CCCCAAA
1 CCCTAAA
*
14438 CCCCAAA
1 CCCTAAA
14445 CCC-AAA
1 CCCTAAA
*
14451 CCCCAAA
1 CCCTAAA
*
14458 CCCCAAA
1 CCCTAAA
*
14465 CCCCAAA
1 CCCTAAA
*
14472 CCCCAAA
1 CCCTAAA
*
14479 CCCCAAA
1 CCCTAAA
*
14486 CCCCAAA
1 CCCTAAA
14493 CCC
1 CCC
14496 CCAAACCCCA
Statistics
Matches: 14136, Mismatches: 44, Indels: 616
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.00
5 35 0.00
6 400 0.03
7 12596 0.89
8 829 0.06
9 177 0.01
10 73 0.01
11 3 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:14520 original size:7 final size:7
Alignment explanation
Indices: 14510--15128 Score: 992
Period size: 7 Copynumber: 88.9 Consensus size: 7
14500 ACCCCAAAAA
*
14510 CCCGAAC
1 CCCGAGC
*
14517 CCCGAAC
1 CCCGAGC
*
14524 CCCGA-A
1 CCCGAGC
*
14530 CCCGAAC
1 CCCGAGC
*
14537 CCCGAAC
1 CCCGAGC
*
14544 CCCGAAC
1 CCCGAGC
*
14551 CCCGAAC
1 CCCGAGC
*
14558 CCCGAAC
1 CCCGAGC
*
14565 CCCGAAC
1 CCCGAGC
*
14572 CCCGAAC
1 CCCGAGC
*
14579 CCCGAAC
1 CCCGAGC
*
14586 CCCGAAC
1 CCCGAGC
*
14593 CCCGAAC
1 CCCGAGC
*
14600 CCCGAAC
1 CCCGAGC
*
14607 CCCGAAC
1 CCCGAGC
*
14614 CCCGAAC
1 CCCGAGC
*
14621 CCCGAAC
1 CCCGAGC
*
14628 CCCGAAC
1 CCCGAGC
*
14635 CCCGAAC
1 CCCGAGC
*
14642 CCCGAAC
1 CCCGAGC
*
14649 CCCGAAC
1 CCCGAGC
*
14656 CCCGAAC
1 CCCGAGC
*
14663 CCCGAAC
1 CCCGAGC
*
14670 CCCGAAC
1 CCCGAGC
*
14677 CCCGAAC
1 CCCGAGC
14684 CCCGAGC
1 CCCGAGC
14691 CCCGAGC
1 CCCGAGC
14698 CCCGAGC
1 CCCGAGC
14705 CCCGAGC
1 CCCGAGC
14712 CCCGAGC
1 CCCGAGC
14719 CCCGAGC
1 CCCGAGC
14726 CCCGAGC
1 CCCGAGC
14733 CCCGAGC
1 CCCGAGC
14740 CCCGAG-
1 CCCGAGC
14746 CCCGAGC
1 CCCGAGC
14753 CCCGAGC
1 CCCGAGC
14760 CCCGAGC
1 CCCGAGC
14767 CCCGAGC
1 CCCGAGC
14774 CCCGAGC
1 CCCGAGC
14781 CCCGAGC
1 CCCGAGC
14788 CCCGAGC
1 CCCGAGC
14795 CCCGAGC
1 CCCGAGC
14802 CCCGAGC
1 CCCGAGC
14809 CCCGAGC
1 CCCGAGC
14816 CCCGAGC
1 CCCGAGC
14823 CCCGAGC
1 CCCGAGC
14830 CCCGAGC
1 CCCGAGC
14837 CCCGAG-
1 CCCGAGC
14843 CCCGAGC
1 CCCGAGC
14850 CCCGAGC
1 CCCGAGC
14857 CCCGAGC
1 CCCGAGC
14864 CCCGAGC
1 CCCGAGC
14871 CCCGAGC
1 CCCGAGC
14878 CCCGAGC
1 CCCGAGC
14885 CCCGAGC
1 CCCGAGC
14892 CCCGAGC
1 CCCGAGC
14899 CCCGAGC
1 CCCGAGC
14906 CCCGAGC
1 CCCGAGC
14913 CCCGAGC
1 CCCGAGC
14920 CCCGAGC
1 CCCGAGC
14927 CCCGAGC
1 CCCGAGC
14934 CCCGAGC
1 CCCGAGC
14941 CCCGAGC
1 CCCGAGC
14948 CCCGAGC
1 CCCGAGC
14955 CCCGAGC
1 CCCGAGC
14962 CCCGAGC
1 CCCGAGC
14969 CCCGAGC
1 CCCGAGC
14976 CCCGAGC
1 CCCGAGC
14983 CCCGAGC
1 CCCGAGC
14990 CCCGAGC
1 CCCGAGC
14997 CCCGAGC
1 CCCGAGC
15004 CCCGAGC
1 CCCGAGC
15011 CCCGAGC
1 CCCGAGC
15018 CCCGAGC
1 CCCGAGC
15025 CCCGAGC
1 CCCGAGC
15032 CCCGAGC
1 CCCGAGC
15039 CCCGAGC
1 CCCGAGC
15046 CCCGAGC
1 CCCGAGC
15053 CCCGAGC
1 CCCGAGC
15060 CCCGAGC
1 CCCGAGC
15067 CCCGAGC
1 CCCGAGC
15074 CCCGAGC
1 CCCGAGC
15081 CCCGAGC
1 CCCGAGC
15088 CCCGAGC
1 CCCGAGC
15095 CCCGAGC
1 CCCGAGC
15102 CCCGAGC
1 CCCGAGC
15109 CCCGAGC
1 CCCGAGC
15116 CCCGAGC
1 CCCGAGC
15123 CCCGAG
1 CCCGAG
15129 AGTTTACTAT
Statistics
Matches: 606, Mismatches: 3, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
6 17 0.03
7 589 0.97
ACGTcount: A:0.18, C:0.57, G:0.25, T:0.00
Consensus pattern (7 bp):
CCCGAGC
Found at i:65010 original size:67 final size:69
Alignment explanation
Indices: 64901--65031 Score: 221
Period size: 68 Copynumber: 1.9 Consensus size: 69
64891 TCTTCTTCTG
*
64901 GTTTTGGGATTTCATCTGCTTCTGAAGAGGTTTCGGCTTGC-TTCGGGGGAAAGTTTTGGTTTTC
1 GTTTTGGCATTTCATCTGCTTCTGAAGAGGTTTCGGCTTGCTTTCGGGGGAAAGTTTTGGTTTTC
64965 TTTT
66 TTTT
* *
64969 GTTTTGGCTTTTCATCTGCTT-TGAAGAGGTTTCGGCTTGCTTTGGGGGGAAAGTTTTGGTTTT
1 GTTTTGGCATTTCATCTGCTTCTGAAGAGGTTTCGGCTTGCTTTCGGGGGAAAGTTTTGGTTTT
65032 TCATTTGCCG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
67 19 0.32
68 40 0.68
ACGTcount: A:0.11, C:0.12, G:0.31, T:0.46
Consensus pattern (69 bp):
GTTTTGGCATTTCATCTGCTTCTGAAGAGGTTTCGGCTTGCTTTCGGGGGAAAGTTTTGGTTTTC
TTTT
Found at i:65717 original size:26 final size:26
Alignment explanation
Indices: 65674--65729 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
65664 AACGAGTCAA
*
65674 CAATAATATAATGGAATAGTATTCAC
1 CAATAATATAATGAAATAGTATTCAC
* *
65700 CAATAATATAGTGAAATAGTATTCAT
1 CAATAATATAATGAAATAGTATTCAC
65726 CAAT
1 CAAT
65730 GAGTAACAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (26 bp):
CAATAATATAATGAAATAGTATTCAC
Found at i:66794 original size:15 final size:15
Alignment explanation
Indices: 66774--66803 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66764 ACACATTTTG
66774 ATTTATTTTTTTAAT
1 ATTTATTTTTTTAAT
66789 ATTTATTTTTTTAAT
1 ATTTATTTTTTTAAT
66804 GAACCAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTATTTTTTTAAT
Found at i:69318 original size:15 final size:14
Alignment explanation
Indices: 69302--69429 Score: 53
Period size: 15 Copynumber: 8.7 Consensus size: 14
69292 TGCAATTTTA
69302 AGGTTTTAAGGTTT
1 AGGTTTTAAGGTTT
* * * *
69316 AAGATCTAAGATTTT
1 AGGTTTTAAG-GTTT
* *
69331 AGGATTTAGAGATTT
1 AGGTTTTA-AGGTTT
*
69346 AGG-ATTAAGGGTTTT
1 AGGTTTTAA-GG-TTT
*
69361 AGATTTTATA-GTTT
1 AGGTTTTA-AGGTTT
*
69375 AGGGTTTAAGGTTT
1 AGGTTTTAAGGTTT
* *
69389 AGTATTTTAGGGTTT
1 AG-GTTTTAAGGTTT
* *
69404 AAGATTTAAGGTTTT
1 AGGTTTTAAGG-TTT
69419 AGGATTTTAAG
1 AGG-TTTTAAG
69430 CTTTTTTTTC
Statistics
Matches: 82, Mismatches: 22, Indels: 18
0.67 0.18 0.15
Matches are distributed among these distances:
13 2 0.02
14 32 0.39
15 36 0.44
16 11 0.13
17 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (14 bp):
AGGTTTTAAGGTTT
Found at i:69338 original size:22 final size:22
Alignment explanation
Indices: 69298--69421 Score: 108
Period size: 22 Copynumber: 5.6 Consensus size: 22
69288 TAACTGCAAT
* *
69298 TTTAAGGTTTTAAGGTTTAAGA
1 TTTAAGATTTTAGGGTTTAAGA
* *
69320 TCTAAGATTTTAGGATTTAGAGA
1 TTTAAGATTTTAGGGTTTA-AGA
* * *
69343 TTTAGGA-TTAAGGGTTTTAGA
1 TTTAAGATTTTAGGGTTTAAGA
* * * *
69364 TTTTATAGTTTAGGGTTTAAGG
1 TTTAAGATTTTAGGGTTTAAGA
69386 TTT-AGTATTTTAGGGTTTAAGA
1 TTTAAG-ATTTTAGGGTTTAAGA
*
69408 TTTAAGGTTTTAGG
1 TTTAAGATTTTAGG
69422 ATTTTAAGCT
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
21 8 0.10
22 61 0.77
23 10 0.13
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (22 bp):
TTTAAGATTTTAGGGTTTAAGA
Found at i:69375 original size:29 final size:28
Alignment explanation
Indices: 69312--69427 Score: 92
Period size: 30 Copynumber: 3.9 Consensus size: 28
69302 AGGTTTTAAG
* *
69312 GTTTAAGATCTAAGATTTTAGGA-TTTAGA
1 GTTTAGGAT-TAAGGTTTTA-GATTTTAGA
*
69341 GATTTAGGATTAAGGGTTTTAGATTTTATA
1 G-TTTAGGATTAA-GGTTTTAGATTTTAGA
* *
69371 GTTTAGGGTTTAAGG-TTTAGTATTTTAGG
1 GTTTA-GGATTAAGGTTTTAG-ATTTTAGA
*
69400 GTTTAAGATTTAAGGTTTTAGGATTTTA
1 GTTTAGGA-TTAAGGTTTTA-GATTTTA
69428 AGCTTTTTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 15
0.76 0.09 0.16
Matches are distributed among these distances:
28 6 0.08
29 29 0.41
30 35 0.49
31 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (28 bp):
GTTTAGGATTAAGGTTTTAGATTTTAGA
Found at i:71767 original size:61 final size:59
Alignment explanation
Indices: 71634--71880 Score: 190
Period size: 62 Copynumber: 4.0 Consensus size: 59
71624 AAAAAAAAAT
* * * * * *
71634 TTGCATGGCCGACACCTCTTTTTTGTCAGGAAAAAAATTCAAAATTTTTGGTGTTAGCCA
1 TTGCATGGTCGACACC-CCTTTTTCTCAAGAAAAAAATTCAAATTTTTTGGTGTTGGCCA
***
71694 TCAAATGGTCGACACCCCTTTTTCTCAAGAAAAAAATTGCAATATTTTTTGGTGTTGGCCA
1 TTGCATGGTCGACACCCCTTTTTCTCAAGAAAAAAATT-CAA-ATTTTTTGGTGTTGGCCA
* * * * *
71755 TTGCATGATCGACACCCCCTTTTTCTCGAGAAAAAATTTTTAAATTTTTTTGGTATTGGCCA
1 TTGCATGGTCGACA-CCCCTTTTTCTCAAGAAAAAA-ATTCAAA-TTTTTTGGTGTTGGCCA
*** * * ** *
71817 TCAAATAGTCGACAACTCCATTTTT-TCGGGGAAAAAATTTCAAAAATTTTTTGGTGTTGGCCA
1 TTGCATGGTCGAC-AC-CCCTTTTTCTC-AAGAAAAAAATTC--AAATTTTTTGGTGTTGGCCA
71880 T
1 T
71881 CAAATGGTCA
Statistics
Matches: 151, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
59 19 0.13
60 15 0.10
61 27 0.18
62 52 0.34
63 35 0.23
64 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (59 bp):
TTGCATGGTCGACACCCCTTTTTCTCAAGAAAAAAATTCAAATTTTTTGGTGTTGGCCA
Found at i:71805 original size:62 final size:62
Alignment explanation
Indices: 71678--71886 Score: 210
Period size: 63 Copynumber: 3.4 Consensus size: 62
71668 AAATTCAAAA
* * * * **
71678 TTTTTGGTGTTAGCCATCAAATGGTCGACA-CCCCTTTTTCTCAAGAAAAAA-ATTGCAATAT
1 TTTTTGGTGTTGGCCATCAAATGATCGACACCCCCTTTTTCTCGAGAAAAAATTTTAAAAT-T
*** *
71739 TTTTTGGTGTTGGCCATTGCATGATCGACACCCCCTTTTTCTCGAGAAAAAATTTTTAAATT
1 TTTTTGGTGTTGGCCATCAAATGATCGACACCCCCTTTTTCTCGAGAAAAAATTTTAAAATT
* * * * * *
71801 TTTTTGGTATTGGCCATCAAAT-AGTCGACAACTCCATTTTT-TCGGGGAAAAAATTTCAAAAAT
1 TTTTTGGTGTTGGCCATCAAATGA-TCGAC-ACCCCCTTTTTCTC-GAGAAAAAATTTTAAAATT
71864 TTTTTGGTGTTGGCCATCAAATG
1 TTTTTGGTGTTGGCCATCAAATG
71887 GTCAACAACC
Statistics
Matches: 122, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
61 26 0.21
62 46 0.38
63 50 0.41
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (62 bp):
TTTTTGGTGTTGGCCATCAAATGATCGACACCCCCTTTTTCTCGAGAAAAAATTTTAAAATT
Found at i:72013 original size:114 final size:113
Alignment explanation
Indices: 71883--72090 Score: 319
Period size: 114 Copynumber: 1.8 Consensus size: 113
71873 TTGGCCATCA
* *
71883 AATGGTCAACAACCAAAAATGTAATTTTTTT-TGAAATAGAGGGTGTCGACCATTTGATGGCCAA
1 AATGGCCAACAACCAAAAATGTAATTTTTTTCTGAAATA-AGGGTGTCGACAATTTGATGGCCAA
** *
71947 CATCAAAAAATTTTGAAATTTTTTTCTCAAAAACGAGGTATTAGCCATGC
65 CAAAAAAAAAATTTG-AATTTTTTTCTCAAAAACGAGGTATTAGCCATGC
* * *
71997 AATGGCCAACATCCAAAAATGTTATTTTTTTCTGAAATAAGGGTGTCGGCAATTTGATGGCCAAC
1 AATGGCCAACAACCAAAAATGTAATTTTTTTCTGAAATAAGGGTGTCGACAATTTGATGGCCAAC
72062 AAAAAAAAAATTTGAATTTTTTTCTCAAA
66 AAAAAAAAAATTTGAATTTTTTTCTCAAA
72091 CAAGGTCATG
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
113 15 0.18
114 63 0.74
115 7 0.08
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (113 bp):
AATGGCCAACAACCAAAAATGTAATTTTTTTCTGAAATAAGGGTGTCGACAATTTGATGGCCAAC
AAAAAAAAAATTTGAATTTTTTTCTCAAAAACGAGGTATTAGCCATGC
Found at i:72614 original size:116 final size:110
Alignment explanation
Indices: 72441--72671 Score: 399
Period size: 116 Copynumber: 2.0 Consensus size: 110
72431 ATTATTGCTT
72441 CCAACTTGCTATGGTCCTTAACATAAAAATATATATGTTTGTACAAACACTATCATTTGACAATC
1 CCAACTTGCTATGGTCCTTAACATAAAAATATATATGTTTGTACAAACACTATCATTTGACAATC
72506 ATTAGAGGATGATGGATGATGGTGTTGGCATTGAGATGATCAACA
66 ATTAGAGGATGATGGATGATGGTGTTGGCATTGAGATGATCAACA
72551 CCAACTTGCTATGGTCCTTAACATAAATATATATATATATATGTTTGTACAAACACTATCATTTG
1 CCAACTTGCTATGGTCCTTAACAT--A-A-A-A-ATATATATGTTTGTACAAACACTATCATTTG
*
72616 ACAATTATTAGAGGATGATGGATGATGGTGTTGGCATTGAGATGATCAACA
60 ACAATCATTAGAGGATGATGGATGATGGTGTTGGCATTGAGATGATCAACA
72667 CCAAC
1 CCAAC
72672 ATGCACGATA
Statistics
Matches: 114, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
110 24 0.21
112 1 0.01
113 1 0.01
114 1 0.01
115 1 0.01
116 86 0.75
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (110 bp):
CCAACTTGCTATGGTCCTTAACATAAAAATATATATGTTTGTACAAACACTATCATTTGACAATC
ATTAGAGGATGATGGATGATGGTGTTGGCATTGAGATGATCAACA
Found at i:79040 original size:4 final size:4
Alignment explanation
Indices: 79031--79062 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
79021 TGTTAAATTG
79031 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
79063 TAGTTTGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:82504 original size:18 final size:16
Alignment explanation
Indices: 82483--82527 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
82473 TTTATATTTA
82483 ATTTTTATTTTCTTTCAT
1 ATTTTTATTTTCTTT--T
*
82501 ATTTTGATTTTCTTTT
1 ATTTTTATTTTCTTTT
82517 AGTTTTTATTT
1 A-TTTTTATTT
82528 GCCTTTGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 8 0.33
18 14 0.58
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.73
Consensus pattern (16 bp):
ATTTTTATTTTCTTTT
Found at i:82589 original size:23 final size:24
Alignment explanation
Indices: 82540--82591 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
82530 CTTTGTACAC
*
82540 GCTTTTCCTCTATACCTTGTGGCAT
1 GCTTTTCCTCTATA-CTTATGGCAT
82565 GCTTTTCCTCTAT-CTTATGGCAT
1 GCTTTTCCTCTATACTTATGGCAT
82588 GCTT
1 GCTT
82592 CTGCCTTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 13 0.50
25 13 0.50
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.46
Consensus pattern (24 bp):
GCTTTTCCTCTATACTTATGGCAT
Found at i:88822 original size:140 final size:139
Alignment explanation
Indices: 88568--89098 Score: 579
Period size: 140 Copynumber: 3.9 Consensus size: 139
88558 AGCATTATCC
* * * * *
88568 CGACACTTTCCTAAGTGTGGGGATAGACTTGCTAACATACACTTTTGCCAACTCTTTTATATAAG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATACGCTTTGGCCAACTC-TTTGTATAAG
* * * *
88633 GGTTGGGATATGCATGCCTAAGGCAATGCA-TAAATAACAGTCGATTTTGTCTAACACTATAACG
65 GGTTGGGATATGCATGCCCAAGGCAACG-ATTAAATAAGAGTCGACTTTGTCTAACACTATAACG
88697 AAACTTTTGGGT
129 -AACTTTTGGGT
** * **
88709 CGACACTTTTTTAAGTGTTGGGATAGACTTGTTGACATTTGCTTTGGCCAACTCTTTGTATAAGG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATACGCTTTGGCCAACTCTTTGTATAAGG
* *
88774 GTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTG--T--C-C---AAC--A
66 GTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTCGACTTTGTCTAACACTATAACGAA
*
88829 C-TAT--GT
131 CTTTTGGGT
* *
88835 CGACACTTTCCTAAGTGTTGGGATAGAGTTGCTGACATATGCTTTGGCCAACTCTTTGTATAAGG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATACGCTTTGGCCAACTCTTTGTATAAGG
* * * *
88900 GTTGGGATATGCATGCCCAAGGCAACGTTTAAATAAGAGTCGGCTTTGTCCAACACTATATCGAT
66 GTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTCGACTTTGTCTAACACTATAACGA-
88965 ACTTTTGGGT
130 ACTTTTGGGT
* * * * * * * *
88975 TGACACTTTCCTAAGTGTCGGGATAGATTTGCCGGCATACGCTTTGGCCAATTATTTGTATAAGA
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATACGCTTTGGCCAACTCTTTGTATAAGG
** ** * *
89040 GTTGAAATATGCATGCTTAAGACAAC-ACTTAAATAAGAGTTGACTTTGTCTAACACTAT
66 GTTGGGATATGCATGCCCAAGGCAACGA-TTAAATAAGAGTCGACTTTGTCTAACACTAT
89099 GCCGACACTT
Statistics
Matches: 329, Mismatches: 45, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
126 108 0.33
128 2 0.01
129 2 0.01
130 1 0.00
131 1 0.00
132 3 0.01
134 2 0.01
135 1 0.00
136 1 0.00
137 2 0.01
138 3 0.01
139 1 0.00
140 157 0.48
141 45 0.14
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (139 bp):
CGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATACGCTTTGGCCAACTCTTTGTATAAGG
GTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTCGACTTTGTCTAACACTATAACGAA
CTTTTGGGT
Found at i:88932 original size:126 final size:126
Alignment explanation
Indices: 88707--89120 Score: 479
Period size: 126 Copynumber: 3.2 Consensus size: 126
88697 AAACTTTTGG
** * *
88707 GTCGACACTTTTTTAAGTGTTGGGATAGACTTGTTGACATTTGCTTTGGCCAACTCTTTGTATAA
1 GTCGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATATGCTTTGGCCAACTCTTTGTATAA
88772 GGGTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTGTCCAACACTAT
66 GGGTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTGTCCAACACTAT
*
88833 GTCGACACTTTCCTAAGTGTTGGGATAGAGTTGCTGACATATGCTTTGGCCAACTCTTTGTATAA
1 GTCGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATATGCTTTGGCCAACTCTTTGTATAA
* *
88898 GGGTTGGGATATGCATGCCCAAGGCAACGTTTAAATAAGAGTCGGCTTTGTCCAACACTATAT
66 GGGTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTGTCCAACAC--TAT
* * * * *
88961 CGATACTTTTGGGTTGACACTTTCCTAAGTGTCGGGATAGATTTGCCGGCATACGCTTTGGCCAA
1 -G-T-C---------GACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATATGCTTTGGCCAA
* * * ** ** * *
89026 TTATTTGTATAAGAGTTGAAATATGCATGCTTAAGACAAC-ACTTAAATAAGAGTTGACTTTGTC
54 CTCTTTGTATAAGGGTTGGGATATGCATGCCCAAGGCAACGA-TTAAATAAGAGTTGGCTTTGTC
*
89090 TAACACTAT
118 CAACACTAT
*
89099 GCCGACACTTTCCTAAGTGTTG
1 GTCGACACTTTCCTAAGTGTTG
89121 AGAACTTGGG
Statistics
Matches: 247, Mismatches: 26, Indels: 30
0.82 0.09 0.10
Matches are distributed among these distances:
126 134 0.54
128 3 0.01
129 1 0.00
130 1 0.00
131 1 0.00
135 1 0.00
137 1 0.00
138 3 0.01
140 102 0.41
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (126 bp):
GTCGACACTTTCCTAAGTGTTGGGATAGACTTGCTGACATATGCTTTGGCCAACTCTTTGTATAA
GGGTTGGGATATGCATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTGTCCAACACTAT
Found at i:89021 original size:266 final size:267
Alignment explanation
Indices: 88454--89120 Score: 825
Period size: 266 Copynumber: 2.5 Consensus size: 267
88444 GTTTGTTTTG
* * * * * * * * * * *
88454 AAGTGTTGAGATAGACTTGTCAACATATGCTTTTGTCAACTTTTTGTATAAGGATTAGGATATGT
1 AAGTGTCGGGATAGACTTGCCGACATACGCTTTGGCCAACTATTTGTATAAGGGTTGGGATATGC
* * * * *
88519 ATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTGTTCAGCATTATCCCGACACTTTCCTAAGT
66 ATGCCTAAGACAACGATTAAATAAGAGTTGGCTTTGTCCAACACTATGCCGACACTTTCCTAAGT
* *
88584 GTGGGGATAGACTTGCTAACATACACTTTTGCCAACTCTTTTATATAAGGGTTGGGATATGCATG
131 GTTGGGATAGACTTGCTAACATACACTTTGGCCAACTCTTTTATATAAGGGTTGGGATATGCATG
* * * *
88649 CCTAAGGCAATGCATAAATAACAGTCGATTTTGTCTAACACTATAACGAAACTTTTGGGTCGACA
196 CCCAAGGCAACGCATAAATAACAGTCGACTTTGTCCAACACTATAACGAAACTTTTGGGTCGACA
**
88714 CTTTTTT
261 CTTTCCT
* ** ** *
88721 AAGTGTTGGGATAGACTTGTTGACATTTGCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGC
1 AAGTGTCGGGATAGACTTGCCGACATACGCTTTGGCCAACTATTTGTATAAGGGTTGGGATATGC
* * *
88786 ATGCCCAAGGCAACGATTAAATAAGAGTTGGCTTTGTCCAACACTATGTCGACACTTTCCTAAGT
66 ATGCCTAAGACAACGATTAAATAAGAGTTGGCTTTGTCCAACACTATGCCGACACTTTCCTAAGT
* * ** *
88851 GTTGGGATAGAGTTGCTGACATATGCTTTGGCCAACTC-TTTGTATAAGGGTTGGGATATGCATG
131 GTTGGGATAGACTTGCTAACATACACTTTGGCCAACTCTTTTATATAAGGGTTGGGATATGCATG
** * * * * *
88915 CCCAAGGCAACGTTTAAATAAGAGTCGGCTTTGTCCAACACTATATCGATACTTTTGGGTTGACA
196 CCCAAGGCAACGCATAAATAACAGTCGACTTTGTCCAACACTATAACGAAACTTTTGGGTCGACA
88980 CTTTCCT
261 CTTTCCT
* * * * **
88987 AAGTGTCGGGATAGATTTGCCGGCATACGCTTTGGCCAATTATTTGTATAAGAGTTGAAATATGC
1 AAGTGTCGGGATAGACTTGCCGACATACGCTTTGGCCAACTATTTGTATAAGGGTTGGGATATGC
* * *
89052 ATGCTTAAGACAAC-ACTTAAATAAGAGTTGACTTTGTCTAACACTATGCCGACACTTTCCTAAG
66 ATGCCTAAGACAACGA-TTAAATAAGAGTTGGCTTTGTCCAACACTATGCCGACACTTTCCTAAG
89116 TGTTG
130 TGTTG
89121 AGAACTTGGG
Statistics
Matches: 343, Mismatches: 56, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
265 1 0.00
266 198 0.58
267 144 0.42
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (267 bp):
AAGTGTCGGGATAGACTTGCCGACATACGCTTTGGCCAACTATTTGTATAAGGGTTGGGATATGC
ATGCCTAAGACAACGATTAAATAAGAGTTGGCTTTGTCCAACACTATGCCGACACTTTCCTAAGT
GTTGGGATAGACTTGCTAACATACACTTTGGCCAACTCTTTTATATAAGGGTTGGGATATGCATG
CCCAAGGCAACGCATAAATAACAGTCGACTTTGTCCAACACTATAACGAAACTTTTGGGTCGACA
CTTTCCT
Found at i:91307 original size:15 final size:16
Alignment explanation
Indices: 91281--91310 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
91271 TTTAAATTGA
91281 AAATACTATAATAAAT
1 AAATACTATAATAAAT
91297 AAATA-TATAATAAA
1 AAATACTATAATAAA
91311 GCAGCAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATACTATAATAAAT
Found at i:101774 original size:31 final size:31
Alignment explanation
Indices: 101734--101797 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
101724 AAAATTTCAA
* * *
101734 AATTCGAAAAGTACAGGGACTAAATTTGATC
1 AATTCGAAAAGAACAGAGACTAAAATTGATC
*
101765 AATTTGAAAAGAACAGAGACTAAAATTGATC
1 AATTCGAAAAGAACAGAGACTAAAATTGATC
101796 AA
1 AA
101798 ATTAAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.23
Consensus pattern (31 bp):
AATTCGAAAAGAACAGAGACTAAAATTGATC
Found at i:105595 original size:36 final size:36
Alignment explanation
Indices: 105548--105654 Score: 178
Period size: 36 Copynumber: 3.0 Consensus size: 36
105538 GGTAGTGAGT
* *
105548 TGAGTGGCGAGCTGAGAAGGACGTGACGAGTAGAGC
1 TGAGTGGCGAGCTAAGAAGGACGTGACAAGTAGAGC
105584 TGAGTGGCGAGCTAAGAAGGACGTGACAAGTAGAGC
1 TGAGTGGCGAGCTAAGAAGGACGTGACAAGTAGAGC
**
105620 TGAGTGGATAGCTAAGAAGGACGTGACAAGTAGAG
1 TGAGTGGCGAGCTAAGAAGGACGTGACAAGTAGAG
105655 TTGGGTGGTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.33, C:0.12, G:0.40, T:0.15
Consensus pattern (36 bp):
TGAGTGGCGAGCTAAGAAGGACGTGACAAGTAGAGC
Found at i:109886 original size:23 final size:23
Alignment explanation
Indices: 109837--110025 Score: 144
Period size: 23 Copynumber: 8.5 Consensus size: 23
109827 TAAACGGAAC
* * *
109837 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
109859 GAACAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
109882 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
109902 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
109921 AATCAGAGAGCACACGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*** *
109944 AATTGGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
109967 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
109992 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
110015 AATCAGAGAGC
1 AAACAGAGAGC
110026 GCGCTAGTGT
Statistics
Matches: 130, Mismatches: 25, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
16 10 0.08
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.02
22 12 0.09
23 84 0.65
24 2 0.02
25 14 0.11
26 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:109913 original size:39 final size:39
Alignment explanation
Indices: 109866--109940 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
109856 ACTGAACAGA
*
109866 GAGCACACAAAGTGCTAAACAGAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
* *
109905 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGT
109941 GCTAATTGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
Found at i:109983 original size:46 final size:46
Alignment explanation
Indices: 109905--110025 Score: 163
Period size: 48 Copynumber: 2.6 Consensus size: 46
109895 ACAAAGTACT
* * ***
109905 GAGCACACAAAGTGCTAATCAGAGAGCAC-ACGAAGTGCTAATTGGA
1 GAGCACACACAGTGCTAATCAGAGAGCACGA-GACGTGCTAAACAGA
109951 GAGCACACACAGTGCTAATAACAGAGAGCACGAGACGTGCTAAACAGA
1 GAGCACACACAGTGCTAAT--CAGAGAGCACGAGACGTGCTAAACAGA
109999 GAGCACACACAGTGCTAATCAGAGAGC
1 GAGCACACACAGTGCTAATCAGAGAGC
110026 GCGCTAGTGT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 26 0.39
48 40 0.60
49 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12
Consensus pattern (46 bp):
GAGCACACACAGTGCTAATCAGAGAGCACGAGACGTGCTAAACAGA
Found at i:112905 original size:24 final size:24
Alignment explanation
Indices: 112854--112908 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
112844 TCTTTTAGTT
* *
112854 AAACTTTGTTTAATTGTTTCAATT
1 AAACTCTGTTTAATTGTTTCAATC
* * *
112878 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTGTTTAATTGTTTCAATC
112902 AAACTCT
1 AAACTCT
112909 TATTAGTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (24 bp):
AAACTCTGTTTAATTGTTTCAATC
Found at i:114469 original size:8 final size:8
Alignment explanation
Indices: 114456--114480 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
114446 AAAAGGAGCG
114456 AAAATCGA
1 AAAATCGA
114464 AAAATCGA
1 AAAATCGA
114472 AAAATCGA
1 AAAATCGA
114480 A
1 A
114481 GCAAGTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAATCGA
Found at i:124644 original size:19 final size:20
Alignment explanation
Indices: 124615--124654 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
124605 TTATATATTG
*
124615 TTTATAATTTAATTTACATT
1 TTTATAATTTAATTGACATT
*
124635 TTTA-AATTTACTTGACATT
1 TTTATAATTTAATTGACATT
124654 T
1 T
124655 AAAATCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTATAATTTAATTGACATT
Found at i:131450 original size:23 final size:23
Alignment explanation
Indices: 131424--131544 Score: 156
Period size: 23 Copynumber: 5.2 Consensus size: 23
131414 ACACTAGCGC
131424 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
131447 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
131470 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG--ATTAGCACTGTGTGT
*
131495 GCTCTCCGATTAGCACT-TCGTGT
1 GCTCTCTGATTAGCACTGT-GTGT
*
131518 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
131541 GCTC
1 GCTC
131545 AGTACTTTGT
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
22 4 0.05
23 62 0.72
24 1 0.01
25 16 0.19
26 3 0.03
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.40
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:131493 original size:48 final size:46
Alignment explanation
Indices: 131424--131544 Score: 172
Period size: 48 Copynumber: 2.6 Consensus size: 46
131414 ACACTAGCGC
* *
131424 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACGTC-TCGT
1 GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGT-GT
*
131470 GCTCTCTGTTATTAGCACTGTGTGTGCTCTCCGATTAGCACTTCGTGT
1 GCTCTCTG--ATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
*
131518 GCTCTCTGATTAGCACTTTGTGTGCTC
1 GCTCTCTGATTAGCACTGTGTGTGCTC
131545 AGTACTTTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
46 26 0.38
48 41 0.60
49 1 0.01
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.40
Consensus pattern (46 bp):
GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
Found at i:131573 original size:39 final size:39
Alignment explanation
Indices: 131509--131583 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
131499 TCCGATTAGC
*
131509 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
* *
131548 ACTTTGTGTACTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
131584 TCTGTTCAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
Found at i:131578 original size:23 final size:23
Alignment explanation
Indices: 131548--131612 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
131538 TGTGCTCAGT
131548 ACTTTGTGTACTCTCTGTTTAGC
1 ACTTTGTGTACTCTCTGTTTAGC
* * *
131571 ACTTTGTGTGCTCTCTGTTCAGT
1 ACTTTGTGTACTCTCTGTTTAGC
*
131594 ACTTCG-GTACTCTCTGTTT
1 ACTTTGTGTACTCTCTGTTT
131613 GTTCTGTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 11 0.31
23 25 0.69
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (23 bp):
ACTTTGTGTACTCTCTGTTTAGC
Found at i:132534 original size:18 final size:18
Alignment explanation
Indices: 132511--132547 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
132501 TCAAAAGAGT
132511 AATAAATTGACTGATGTG
1 AATAAATTGACTGATGTG
132529 AATAAATTGACTGATGTG
1 AATAAATTGACTGATGTG
132547 A
1 A
132548 TCTCTAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (18 bp):
AATAAATTGACTGATGTG
Found at i:134253 original size:37 final size:38
Alignment explanation
Indices: 134171--134246 Score: 93
Period size: 40 Copynumber: 2.0 Consensus size: 38
134161 ACCAGAATGG
*
134171 CACCCAGTGTCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAATGTCTCATCGGATAGTTCGAAG--ATAAAGTGA
*
134211 CACCCAATGTCTCATCGGCCTAG-TCGAAG-TAAAGTG
1 CACCCAATGTCTCATCGG-ATAGTTCGAAGATAAAGTG
134247 GTACCCAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
37 7 0.21
40 23 0.70
41 3 0.09
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
CACCCAATGTCTCATCGGATAGTTCGAAGATAAAGTGA
Found at i:135112 original size:9 final size:9
Alignment explanation
Indices: 135098--135122 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
135088 TGTTTTGTTC
135098 TTCTTTTGT
1 TTCTTTTGT
135107 TTCTTTTGT
1 TTCTTTTGT
135116 TTCTTTT
1 TTCTTTT
135123 CTTTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (9 bp):
TTCTTTTGT
Found at i:135636 original size:24 final size:24
Alignment explanation
Indices: 135608--135666 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
135598 TGGACTAATA
*
135608 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTCAAACAAATAAAC
* * *
135632 AGAGTTTAATTGAAACAATTAAAC
1 AGAGTTTAACTCAAACAAATAAAC
135656 AGAGTTTAACT
1 AGAGTTTAACT
135667 AAAAGATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (24 bp):
AGAGTTTAACTCAAACAAATAAAC
Found at i:138707 original size:33 final size:33
Alignment explanation
Indices: 138647--138709 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
138637 CAACATTCTC
*
138647 GTAAATAATTCTTAGCTCAACATATTTTCAGAA
1 GTAAATAATTCTTAGCTCAACACATTTTCAGAA
* *
138680 GTAAATAATTTTTATCTCAATC-CATTTTCA
1 GTAAATAATTCTTAGCTCAA-CACATTTTCA
138710 TAAATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (33 bp):
GTAAATAATTCTTAGCTCAACACATTTTCAGAA
Found at i:138944 original size:30 final size:30
Alignment explanation
Indices: 138908--138964 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
138898 ATTTCAGTCT
138908 CTCAACTTTGAAAATGTGACAAAACAGCCC
1 CTCAACTTTGAAAATGTGACAAAACAGCCC
138938 CTCAACTTTGAAAATGTGACAAAACAG
1 CTCAACTTTGAAAATGTGACAAAACAG
138965 TCCTTTTCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (30 bp):
CTCAACTTTGAAAATGTGACAAAACAGCCC
Found at i:139091 original size:30 final size:31
Alignment explanation
Indices: 139057--139128 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 31
139047 GTTACATTTA
139057 ACAAAATAGTCACTCAACTT-T-GAAAATGTG
1 ACAAAATAGTCACTCAACTTATCGAAAA-GTG
* * *
139087 ACAAAACAGTCACTGAAGTTATCGAAAAGTG
1 ACAAAATAGTCACTCAACTTATCGAAAAGTG
139118 ACAAAATAGTC
1 ACAAAATAGTC
139129 CTCTTGTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 17 0.47
31 14 0.39
32 5 0.14
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (31 bp):
ACAAAATAGTCACTCAACTTATCGAAAAGTG
Found at i:144007 original size:24 final size:24
Alignment explanation
Indices: 143979--144033 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
143969 ACTCAGACAG
143979 AGTTTAATTGAAACAAATAAACAA
1 AGTTTAATTGAAACAAATAAACAA
* *
144003 AGTTTAATTGAAACAATTAAACAG
1 AGTTTAATTGAAACAAATAAACAA
144027 AGTTTAA
1 AGTTTAA
144034 CTAAAAGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (24 bp):
AGTTTAATTGAAACAAATAAACAA
Found at i:145777 original size:16 final size:16
Alignment explanation
Indices: 145753--145792 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
145743 GATAAAAACT
145753 AAAACCAAAAAAACCCG
1 AAAA-CAAAAAAACCCG
*
145770 AAAAC-AAAGAACCCG
1 AAAACAAAAAAACCCG
145785 AAAACAAA
1 AAAACAAA
145793 GAACCCTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 14 0.67
16 3 0.14
17 4 0.19
ACGTcount: A:0.68, C:0.25, G:0.07, T:0.00
Consensus pattern (16 bp):
AAAACAAAAAAACCCG
Found at i:145782 original size:15 final size:15
Alignment explanation
Indices: 145764--145798 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
145754 AAACCAAAAA
145764 AACCCGAAAACAAAG
1 AACCCGAAAACAAAG
145779 AACCCGAAAACAAAG
1 AACCCGAAAACAAAG
145794 AACCC
1 AACCC
145799 TCAAAACGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.31, G:0.11, T:0.00
Consensus pattern (15 bp):
AACCCGAAAACAAAG
Found at i:177438 original size:91 final size:90
Alignment explanation
Indices: 177315--177563 Score: 297
Period size: 91 Copynumber: 2.7 Consensus size: 90
177305 TAAAAAACAG
* * *
177315 TCAAACTTTTTCAAAATAAGCAATTAAGCCCCTGCTTTTATTTTGCACTCACTT-GGATACTTGA
1 TCAAAATTTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTATTTTGCACTCAATTAGG-TACTTGA
* *
177379 ACTTTCAAAATGCATCAAAAAGGCCC
65 ACCTTCAAAATGCATCAAAAAGACCC
*
177405 TCAAAATTTTTCATAAAAAAGCAATTAATCCCCTGCTTTTATTTTGCACTCAATTAGGTACTTGA
1 TCAAAATTTTTCA-AAAAAAGCAATTAAGCCCCTGCTTTTATTTTGCACTCAATTAGGTACTTGA
177470 ACCTTCAAAATGCATCAAAAAGACCC
65 ACCTTCAAAATGCATCAAAAAGACCC
* *** * * *
177496 TCAAACTTTAAAAAAAAAAAAGGGCAATTAAG-CCCTCGATTTT-TTTTGCATTCAATTAGGTAT
1 TCAAAATTT--TTCAAAAAAA--GCAATTAAGCCCCT-GCTTTTATTTTGCACTCAATTAGGTAC
177559 TTGAA
61 TTGAA
177564 TGGTTAAATA
Statistics
Matches: 138, Mismatches: 14, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
90 12 0.09
91 77 0.56
92 8 0.06
93 28 0.20
94 13 0.09
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (90 bp):
TCAAAATTTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTATTTTGCACTCAATTAGGTACTTGAA
CCTTCAAAATGCATCAAAAAGACCC
Found at i:177734 original size:19 final size:18
Alignment explanation
Indices: 177685--177774 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 18
177675 GACATGTGAC
*
177685 AAAAAGATTATAAAAAAT
1 AAAAAAATTATAAAAAAT
*
177703 --AAAAATCAATAAAAAAT
1 AAAAAAAT-TATAAAAAAT
177720 AAAAAAATTATTAAATTTAAAT
1 AAAAAAATTA-TAAA---AAAT
*
177742 -AAAAAATT-TAAAAATTAG
1 AAAAAAATTATAAAAA--AT
177760 AAAAAAATTATAAAA
1 AAAAAAATTATAAAA
177775 TAAATCAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
16 7 0.12
17 9 0.16
18 2 0.04
19 22 0.39
20 5 0.09
21 8 0.14
22 4 0.07
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.26
Consensus pattern (18 bp):
AAAAAAATTATAAAAAAT
Found at i:177734 original size:29 final size:29
Alignment explanation
Indices: 177702--177758 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
177692 TTATAAAAAA
*
177702 TAAAAATCAATAAAAAATAAAAAAATTAT
1 TAAAAATAAATAAAAAATAAAAAAATTAT
** **
177731 TAAATTTAAATAAAAAATTTAAAAATTA
1 TAAAAATAAATAAAAAATAAAAAAATTA
177759 GAAAAAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (29 bp):
TAAAAATAAATAAAAAATAAAAAAATTAT
Found at i:178089 original size:91 final size:89
Alignment explanation
Indices: 177926--178104 Score: 196
Period size: 91 Copynumber: 2.0 Consensus size: 89
177916 TTTTTTTAAG
* * * * * *
177926 TTTGAGGACTTTTTTATGCACTTTGAAAGTTCAAGTACCTAATTGAGTGTAAAATAAAAGTAGGG
1 TTTGAGGACTTTTTGATGCACTTTGAAAGTTCAAGTACCTAAGTGAGCGCAAAATAAAAGCAAGG
* * *
177991 TCCTAATTGCTTTTTTTTGAAAAAA
66 ACCTAATTAC-TTCTTTTGAAAAAA
* * * * * *
178016 TTTGAGAGTCTTTTTGATGCATTTTGAAAGTTTAAGTATCTAAGTGAGCGCAAACTAAAAGCAAT
1 TTTGAG-GACTTTTTGATGCACTTTGAAAGTTCAAGTACCTAAGTGAGCGCAAAATAAAAGCAAG
*
178081 GACTTAATTACTTCTTTTGAAAAA
65 GACCTAATTACTTCTTTTGAAAAA
178105 GTTTAAGACC
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 18 0.25
91 54 0.75
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (89 bp):
TTTGAGGACTTTTTGATGCACTTTGAAAGTTCAAGTACCTAAGTGAGCGCAAAATAAAAGCAAGG
ACCTAATTACTTCTTTTGAAAAAA
Found at i:178377 original size:15 final size:15
Alignment explanation
Indices: 178357--178413 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
178347 ATTCAATATT
178357 AATATTTTAATAATA
1 AATATTTTAATAATA
*
178372 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
178391 AATATATTAATAATA
1 AATATTTTAATAATA
*
178406 AATGTTTT
1 AATATTTT
178414 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:178386 original size:19 final size:19
Alignment explanation
Indices: 178359--178395 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
178349 TCAATATTAA
*
178359 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
178378 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
178396 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:178890 original size:14 final size:15
Alignment explanation
Indices: 178871--178909 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
178861 TTTAAAAAAT
178871 AAATTATTTTTCAG-
1 AAATTATTTTTCAGA
*
178885 AAATTA-TTTTCTGA
1 AAATTATTTTTCAGA
178899 AAATTATTTTT
1 AAATTATTTTT
178910 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 6 0.27
14 12 0.55
15 4 0.18
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (15 bp):
AAATTATTTTTCAGA
Found at i:184890 original size:43 final size:43
Alignment explanation
Indices: 184829--184916 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
184819 GAGGGGTTCG
* *
184829 GTGGCTCACGGTGCTTTGGAGCGTACAAGTTTTTCCAAATCCT
1 GTGGCTCACGGTGCTTTGGAGCGCACAAGTTTTGCCAAATCCT
*
184872 GTGGCTCACGGTGCTTTGGAGCGCACAAGTTTTGCCAACTCCT
1 GTGGCTCACGGTGCTTTGGAGCGCACAAGTTTTGCCAAATCCT
184915 GT
1 GT
184917 ATTTTTCGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.17, C:0.25, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGGCTCACGGTGCTTTGGAGCGCACAAGTTTTGCCAAATCCT
Found at i:196599 original size:51 final size:51
Alignment explanation
Indices: 196529--196627 Score: 198
Period size: 51 Copynumber: 1.9 Consensus size: 51
196519 CATATATTTA
196529 GATGTCCCAATTGGCTGTAGACTGTATTATACGAGAAAGCATGTAATATAT
1 GATGTCCCAATTGGCTGTAGACTGTATTATACGAGAAAGCATGTAATATAT
196580 GATGTCCCAATTGGCTGTAGACTGTATTATACGAGAAAGCATGTAATA
1 GATGTCCCAATTGGCTGTAGACTGTATTATACGAGAAAGCATGTAATA
196628 AGTTGGCCAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (51 bp):
GATGTCCCAATTGGCTGTAGACTGTATTATACGAGAAAGCATGTAATATAT
Found at i:207927 original size:46 final size:46
Alignment explanation
Indices: 207874--207967 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
207864 GCCTAATGGC
207874 TTACAAACTGATTCTGATGTAGTTAAAAGGTTAGCATATTTTTGTT
1 TTACAAACTGATTCTGATGTAGTTAAAAGGTTAGCATATTTTTGTT
*
207920 TTACAAACTGATTCTGATGTAGTTAAAAGTTTAGCATATTTTTGTT
1 TTACAAACTGATTCTGATGTAGTTAAAAGGTTAGCATATTTTTGTT
207966 TT
1 TT
207968 GGAATATACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.46
Consensus pattern (46 bp):
TTACAAACTGATTCTGATGTAGTTAAAAGGTTAGCATATTTTTGTT
Found at i:219816 original size:21 final size:21
Alignment explanation
Indices: 219790--219829 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
219780 ATATAAGGAG
219790 TCTAAAATTTTTTGTCCAAGT
1 TCTAAAATTTTTTGTCCAAGT
* *
219811 TCTAAATTTTTTTTTCCAA
1 TCTAAAATTTTTTGTCCAA
219830 TTTAATTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53
Consensus pattern (21 bp):
TCTAAAATTTTTTGTCCAAGT
Found at i:235606 original size:12 final size:12
Alignment explanation
Indices: 235573--235607 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
235563 TTAGTTACAT
*
235573 GCTAACTAACCA
1 GCTAACTAATCA
*
235585 ACTAACTAATCA
1 GCTAACTAATCA
235597 GCTAACTAATC
1 GCTAACTAATC
235608 CTTTTAACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.23
Consensus pattern (12 bp):
GCTAACTAATCA
Found at i:240003 original size:12 final size:12
Alignment explanation
Indices: 239986--240020 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
239976 TTAGTTACAT
239986 GCTAACTAATCA
1 GCTAACTAATCA
239998 GCTAACTAATCA
1 GCTAACTAATCA
240010 GCTAACTAATC
1 GCTAACTAATC
240021 CTTTTAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (12 bp):
GCTAACTAATCA
Found at i:245000 original size:105 final size:106
Alignment explanation
Indices: 244819--245113 Score: 298
Period size: 105 Copynumber: 2.8 Consensus size: 106
244809 GCCATGATCA
* * * *
244819 ACACCACCTTTATCAAATAAAAAAATAATTTTTTTTGTGTTGGTCATGTATTGGCCGACACTACT
1 ACACCACCTATATCAAAT-AAAAAA-AA----TTTTGTGTTGATCATGTATTGGCCGACACCACC
* * **
244884 TTTATTTATCAGAT-AAAAAATTTTGGTGTTGATCATGTTATGGCCG
60 TTTATTTATCAGATAAAAAAAATTTAGTGTTGATCATGCAATGGCCG
* * *
244930 ACACCACCTATATCAGATAAAAAAAATTTTGTGTTGATCATGTATTGGCTGATACCACCTTTATT
1 ACACCACCTATATCAAATAAAAAAAATTTTGTGTTGATCATGTATTGGCCGACACCACCTTTATT
* *
244995 TATCAGATAAAAAAAATTTAGTGTTGGTCATGCAATGGTCG
66 TATCAGATAAAAAAAATTTAGTGTTGATCATGCAATGGCCG
* * ** * * *
245036 ACACTACCTTTATCAAAT-AAAAATGTGTTG-GTTG-T-A--CATTGGCCGACACAACCTTTATT
1 ACACCACCTATATCAAATAAAAAAAATTTTGTGTTGATCATGTATTGGCCGACACCACCTTTATT
*
245095 TATCAGATAAAAAATATTT
66 TATCAGATAAAAAAAATTT
245114 TTTTGGTATG
Statistics
Matches: 159, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
100 37 0.23
102 1 0.01
103 1 0.01
104 4 0.03
105 51 0.32
106 41 0.26
109 2 0.01
110 6 0.04
111 16 0.10
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (106 bp):
ACACCACCTATATCAAATAAAAAAAATTTTGTGTTGATCATGTATTGGCCGACACCACCTTTATT
TATCAGATAAAAAAAATTTAGTGTTGATCATGCAATGGCCG
Found at i:245045 original size:55 final size:55
Alignment explanation
Indices: 244855--245048 Score: 218
Period size: 55 Copynumber: 3.6 Consensus size: 55
244845 AATTTTTTTT
* * * * * *
244855 GTGTTGGTCATGTATTGGCCGACACTACTTTTATTTATCAGAT-AAAAAATTTTG
1 GTGTTGATCATGTAATGGCCGACACCACCTTTATTTATCAGATAAAAAAAATTTA
* *
244909 GTGTTGATCATGTTATGGCCGACACCACC--TA--TATCAGATAAAAAAAATTTT
1 GTGTTGATCATGTAATGGCCGACACCACCTTTATTTATCAGATAAAAAAAATTTA
* * *
244960 GTGTTGATCATGTATTGGCTGATACCACCTTTATTTATCAGATAAAAAAAATTTA
1 GTGTTGATCATGTAATGGCCGACACCACCTTTATTTATCAGATAAAAAAAATTTA
* * * *
245015 GTGTTGGTCATGCAATGGTCGACACTACCTTTAT
1 GTGTTGATCATGTAATGGCCGACACCACCTTTAT
245049 CAAATAAAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
50 8 0.07
51 34 0.29
52 2 0.02
53 2 0.02
54 24 0.21
55 46 0.40
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (55 bp):
GTGTTGATCATGTAATGGCCGACACCACCTTTATTTATCAGATAAAAAAAATTTA
Found at i:246051 original size:30 final size:30
Alignment explanation
Indices: 246017--246080 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
246007 AATTAGAAAT
* *
246017 GAAATTAGAAATTAAATTTAAAATATAAAC
1 GAAATTACAAATTAAATTTAAAAAATAAAC
246047 GAAATTACAAATTAAATTTAAAAAATAAAC
1 GAAATTACAAATTAAATTTAAAAAATAAAC
246077 GAAA
1 GAAA
246081 AAAATCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.27
Consensus pattern (30 bp):
GAAATTACAAATTAAATTTAAAAAATAAAC
Found at i:267623 original size:15 final size:17
Alignment explanation
Indices: 267598--267631 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
267588 TAAAGGATGT
267598 AATATAATA-TTAAAAA
1 AATATAATATTTAAAAA
267614 AATA-AATATTTAAAAA
1 AATATAATATTTAAAAA
267630 AA
1 AA
267632 AGATACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATATAATATTTAAAAA
Found at i:277563 original size:15 final size:14
Alignment explanation
Indices: 277529--277570 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
277519 AATATATTCT
277529 AATTA-TATTTTTA
1 AATTATTATTTTTA
*
277542 AATTATTATTTTTT
1 AATTATTATTTTTA
277556 AATATATT-TTTTTA
1 AAT-TATTATTTTTA
277570 A
1 A
277571 TCCTTTCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.20
14 16 0.64
15 4 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
AATTATTATTTTTA
Found at i:291116 original size:28 final size:29
Alignment explanation
Indices: 291084--291141 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
291074 TTTGATGCTT
*
291084 TTTAATAGT-CAAAGATTAAATTGATCAA
1 TTTAATAGTACAAAAATTAAATTGATCAA
* *
291112 TTTAATAGTAGAAAAATTAATTTGATCAA
1 TTTAATAGTACAAAAATTAAATTGATCAA
291141 T
1 T
291142 CCCTATAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (29 bp):
TTTAATAGTACAAAAATTAAATTGATCAA
Found at i:295288 original size:2 final size:2
Alignment explanation
Indices: 295281--295330 Score: 63
Period size: 2 Copynumber: 27.0 Consensus size: 2
295271 TTATTTCTAC
*
295281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT -T AT -T A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
295320 AT AT -T AT AT AT
1 AT AT AT AT AT AT
295331 TGCACTACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
1 4 0.10
2 38 0.90
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:303581 original size:30 final size:29
Alignment explanation
Indices: 303543--303698 Score: 88
Period size: 29 Copynumber: 5.3 Consensus size: 29
303533 TGGATACCCG
*
303543 GGGGCAAAATAGTAATTTTTGGTAAAATC
1 GGGGTAAAATAGTAATTTTTGGTAAAATC
* * *** *
303572 GGGGTCAAAAATA-AAATTTTAGAG-AGTTTG
1 GGGGT--AAAATAGTAATTTTTG-GTAAAATC
* *
303602 GGGGTAAAATGGTAATTTTTGGTGAAATC
1 GGGGTAAAATAGTAATTTTTGGTAAAATC
* *
303631 GGGGTTTAAAATAG-AA-TTTTAG-AAAGTTC
1 GGGG--TAAAATAGTAATTTTTGGTAAA-ATC
* *
303660 GGTGGTAAAATGGTAATTTTGGGTAAAATC
1 GG-GGTAAAATAGTAATTTTTGGTAAAATC
*
303690 GGGTTAAAA
1 GGGGTAAAA
303699 ATGGAATTTT
Statistics
Matches: 91, Mismatches: 24, Indels: 24
0.65 0.17 0.17
Matches are distributed among these distances:
28 15 0.16
29 33 0.36
30 26 0.29
31 17 0.19
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.32
Consensus pattern (29 bp):
GGGGTAAAATAGTAATTTTTGGTAAAATC
Found at i:303617 original size:59 final size:59
Alignment explanation
Indices: 303541--303700 Score: 223
Period size: 59 Copynumber: 2.7 Consensus size: 59
303531 TTTGGATACC
* * * *
303541 CGGGGGCAAAATAGTAATTTTTGGTAAAATCGGGGTCAAAAATAAAATTTTAGAGAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAAAATTTTAGAAAGTT
* * * *
303600 TGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTTAAAATAGAATTTTAGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAAAATTTTAGAAAGTT
* *
303659 CGGTGGTAAAATGGTAATTTTGGGTAAAATC-GGGTTAAAAAT
1 CGGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAAT
303701 GGAATTTTGA
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
58 10 0.11
59 78 0.89
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAAAATTTTAGAAAGTT
Found at i:303702 original size:30 final size:28
Alignment explanation
Indices: 303606--303709 Score: 77
Period size: 29 Copynumber: 3.5 Consensus size: 28
303596 AGTTTGGGGG
* *
303606 TAAAATGGTAATTTTTGGTGAAATCGGGGTT
1 TAAAATGG-AATTTTGGGTAAAATC-GGG-T
* * * *
303637 TAAAATAGAATTTT-AG-AAAGTTCGGTGG
1 TAAAATGGAATTTTGGGTAAA-ATCGG-GT
303665 TAAAATGGTAATTTTGGGTAAAATCGGGT
1 TAAAATGG-AATTTTGGGTAAAATCGGGT
303694 TAAAAATGGAATTTTG
1 T-AAAATGGAATTTTG
303710 AAAAAACTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
28 11 0.19
29 19 0.33
30 18 0.31
31 10 0.17
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.36
Consensus pattern (28 bp):
TAAAATGGAATTTTGGGTAAAATCGGGT
Found at i:303726 original size:59 final size:58
Alignment explanation
Indices: 303548--303738 Score: 170
Period size: 59 Copynumber: 3.2 Consensus size: 58
303538 ACCCGGGGGC
* * * * * ** **
303548 AAAATAGTAATTTTTGGTAAAATCGGGGTCAAAAATAAAATTTTAGAGAGTTTGGGGGT
1 AAAATGGTAATTTTGGGTAAAATCGGGGTTAAAAATAGAATTTTA-AAAACTTAAGGGT
* * * * * **
303607 AAAATGGTAATTTTTGGTGAAATCGGGGTTTAAAATAGAATTTTAGAAAGTTCGGTGGT
1 AAAATGGTAATTTTGGGTAAAATCGGGGTTAAAAATAGAATTTTAAAAACTTAAG-GGT
*
303666 AAAATGGTAATTTTGGGTAAAATC-GGGTTAAAAATGGAATTTTGAAAAAACTTAAGGGT
1 AAAATGGTAATTTTGGGTAAAATCGGGGTTAAAAATAGAATTTT--AAAAACTTAAGGGT
303725 AAAAAT-GTAATTTT
1 -AAAATGGTAATTTT
303739 TAGAAAGTTT
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
58 22 0.20
59 76 0.69
60 12 0.11
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (58 bp):
AAAATGGTAATTTTGGGTAAAATCGGGGTTAAAAATAGAATTTTAAAAACTTAAGGGT
Found at i:303760 original size:30 final size:31
Alignment explanation
Indices: 303721--303802 Score: 114
Period size: 30 Copynumber: 2.7 Consensus size: 31
303711 AAAAACTTAA
*
303721 GGGTAAAAATGTAATTTTTAGA-AAGTTTTG
1 GGGTCAAAATGTAATTTTTAGAGAAGTTTTG
* *
303751 GGGTCAAAATATAA-TTTTGGAGAAGTTTTG
1 GGGTCAAAATGTAATTTTTAGAGAAGTTTTG
*
303781 GGGTCAAAATGTAATTTCTAGA
1 GGGTCAAAATGTAATTTTTAGA
303803 CAGTGTAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 6 0.14
30 33 0.75
31 5 0.11
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (31 bp):
GGGTCAAAATGTAATTTTTAGAGAAGTTTTG
Found at i:304840 original size:3 final size:3
Alignment explanation
Indices: 304826--304891 Score: 89
Period size: 3 Copynumber: 22.0 Consensus size: 3
304816 GTGTTCTTTT
* * *
304826 TTA TTA TAA TTA TTA TTTA TTA TTA -AA ATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
304871 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
304892 AAGACTCATT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
2 1 0.02
3 52 0.93
4 3 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:305606 original size:17 final size:17
Alignment explanation
Indices: 305584--305616 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
305574 TTTGTATAAA
305584 TTTATTTTAAAATTAAG
1 TTTATTTTAAAATTAAG
*
305601 TTTATTTTAAATTTAA
1 TTTATTTTAAAATTAA
305617 ATTGAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTATTTTAAAATTAAG
Found at i:305664 original size:17 final size:17
Alignment explanation
Indices: 305644--305685 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
305634 TATTGAAAAT
305644 TTAAATTTAAAATAAAC
1 TTAAATTTAAAATAAAC
* *
305661 TTAATTTTAAAATAAAT
1 TTAAATTTAAAATAAAC
305678 TTAAATTT
1 TTAAATTT
305686 TATTGGGCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAAATAAAC
Found at i:309037 original size:2 final size:2
Alignment explanation
Indices: 309030--309060 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
309020 TTCTTTTTCT
309030 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
309061 GTTGTGAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:309109 original size:7 final size:7
Alignment explanation
Indices: 309072--309106 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
309062 TTGTGAGGTT
309072 GAGAAGG
1 GAGAAGG
309079 GAGAAGG
1 GAGAAGG
309086 GAGAAGG
1 GAGAAGG
309093 GAGAAGG
1 GAGAAGG
*
309100 AAGAAGG
1 GAGAAGG
309107 AAGTGCTCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (7 bp):
GAGAAGG
Found at i:311550 original size:16 final size:16
Alignment explanation
Indices: 311531--311581 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
311521 AGTTATTACG
311531 GGTTTTAGCTAATTTA
1 GGTTTTAGCTAATTTA
*
311547 GGTTTAAG-TAATATT-
1 GGTTTTAGCTAAT-TTA
311562 -GTTTTAGCTAATTTA
1 GGTTTTAGCTAATTTA
*
311577 CGTTT
1 GGTTT
311582 ATATCATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.28
15 8 0.28
16 13 0.45
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.51
Consensus pattern (16 bp):
GGTTTTAGCTAATTTA
Found at i:318147 original size:24 final size:24
Alignment explanation
Indices: 318086--318148 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
318076 TAGAGTAATA
* * *
318086 AAAGTTTGACTCAAACAACTAAAC
1 AAAGTTTAACTGAAACAAATAAAC
*
318110 AAAGTTTAATTGAAACAAATAAAC
1 AAAGTTTAACTGAAACAAATAAAC
318134 AGAA-TTTAACTGAAA
1 A-AAGTTTAACTGAAA
318149 GATTATTTCT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 31 0.94
25 2 0.06
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.24
Consensus pattern (24 bp):
AAAGTTTAACTGAAACAAATAAAC
Found at i:322962 original size:21 final size:21
Alignment explanation
Indices: 322938--322977 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
322928 TTAAAATATA
322938 ATTTGA-TCAATTCAGATTTTT
1 ATTTGATTCAATTC-GATTTTT
322959 ATTTGATTCAATTCGATTT
1 ATTTGATTCAATTCGATTT
322978 AACTTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.53
Consensus pattern (21 bp):
ATTTGATTCAATTCGATTTTT
Found at i:323539 original size:51 final size:51
Alignment explanation
Indices: 323426--323565 Score: 192
Period size: 51 Copynumber: 2.8 Consensus size: 51
323416 TTAATAGATG
** ***
323426 GAAATTCTAAATACCATACTTGATTGAAGGATAAA-ACTTTTTTATAGGTC
1 GAAATTCTAAATACCATACTTGATTGAAGGATAAAGTTTTTTTTATAAACC
* *
323476 AAAATTCAAAATACCATACTTGATTGAAGGATAAAGTTTTTTTTATAAACC
1 GAAATTCTAAATACCATACTTGATTGAAGGATAAAGTTTTTTTTATAAACC
* *
323527 GAAATTTTAAATACCATACTTGATCGAAGGATAAAGTTT
1 GAAATTCTAAATACCATACTTGATTGAAGGATAAAGTTT
323566 AAATATATAT
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 33 0.42
51 45 0.58
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (51 bp):
GAAATTCTAAATACCATACTTGATTGAAGGATAAAGTTTTTTTTATAAACC
Found at i:327658 original size:27 final size:27
Alignment explanation
Indices: 327627--327712 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
327617 GTGGCTGAAG
* * *
327627 AGGTGGGGCTTTCGAAGGTGCCTTCAC
1 AGGTGGGACCTTCAAAGGTGCCTTCAC
*
327654 AGGTGGGACCTTCAAAGGTGCCTTCAG
1 AGGTGGGACCTTCAAAGGTGCCTTCAC
*
327681 AGGTGGGACCTTCAAAGGCGCCTTCAC
1 AGGTGGGACCTTCAAAGGTGCCTTCAC
327708 AGGTG
1 AGGTG
327713 TCTAAACCAG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (27 bp):
AGGTGGGACCTTCAAAGGTGCCTTCAC
Found at i:327665 original size:15 final size:15
Alignment explanation
Indices: 327647--327698 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
327637 TTCGAAGGTG
*
327647 CCTTCACAGGTGGGA
1 CCTTCAAAGGTGGGA
327662 CCTTCAAAGGT--G-
1 CCTTCAAAGGTGGGA
*
327674 CCTTCAGAGGTGGGA
1 CCTTCAAAGGTGGGA
327689 CCTTCAAAGG
1 CCTTCAAAGG
327699 CGCCTTCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 10 0.32
13 1 0.03
14 1 0.03
15 19 0.61
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (15 bp):
CCTTCAAAGGTGGGA
Found at i:327677 original size:12 final size:12
Alignment explanation
Indices: 327641--327712 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 12
327631 GGGGCTTTCG
327641 AAGGTGCCTTCA
1 AAGGTGCCTTCA
*
327653 CAGGTGGGACCTTCA
1 AAGGT--G-CCTTCA
327668 AAGGTGCCTTCA
1 AAGGTGCCTTCA
*
327680 GAGGTGGGACCTTCA
1 AAGGT--G-CCTTCA
*
327695 AAGGCGCCTTCA
1 AAGGTGCCTTCA
*
327707 CAGGTG
1 AAGGTG
327713 TCTAAACCAG
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
12 24 0.51
13 2 0.04
14 2 0.04
15 19 0.40
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.21
Consensus pattern (12 bp):
AAGGTGCCTTCA
Found at i:335559 original size:24 final size:23
Alignment explanation
Indices: 335532--335603 Score: 65
Period size: 24 Copynumber: 3.1 Consensus size: 23
335522 TAATTCTTAA
*
335532 AAAATTATAAAAATATAATTTATT
1 AAAATCATAAAAATATAATTT-TT
* *
335556 AAAATGATAAAATTAT-ATTTTT
1 AAAATCATAAAAATATAATTTTT
** *
335578 ATTATCATAAAAATATATAATTTT
1 AAAATCATAAAAATATA-ATTTTT
335602 AA
1 AA
335604 TTTGGATACT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
22 14 0.37
23 4 0.11
24 20 0.53
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (23 bp):
AAAATCATAAAAATATAATTTTT
Found at i:335594 original size:22 final size:23
Alignment explanation
Indices: 335532--335595 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
335522 TAATTCTTAA
*
335532 AAAATTATAAAAATATAATTTATT
1 AAAATCATAAAAATAT-ATTTATT
* *
335556 AAAATGATAAAATTATATTT-TT
1 AAAATCATAAAAATATATTTATT
**
335578 ATTATCATAAAAATATAT
1 AAAATCATAAAAATATAT
335596 AATTTTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 16 0.47
23 4 0.12
24 14 0.41
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
AAAATCATAAAAATATATTTATT
Found at i:337163 original size:2 final size:2
Alignment explanation
Indices: 337156--337180 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
337146 TAAAATATTC
337156 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
337181 GGTAACATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:337322 original size:62 final size:63
Alignment explanation
Indices: 337233--337361 Score: 147
Period size: 63 Copynumber: 2.1 Consensus size: 63
337223 AGATTGTTTA
*
337233 GAAATCAAACCCAATACTTGATATCAAT-ACA-AGCTTAACTAACAATCTAAGATTGGGTTTTT
1 GAAATCAAACCCAATACTTGATATCAATCACATA-CTCAACTAACAATCTAAGATTGGGTTTTT
* * * * * * *
337295 CGAAATCTAA-CCAATACTTTATGTCAATCACATACTCGATTGACAATCTAATATTGGGTTTTT
1 -GAAATCAAACCCAATACTTGATATCAATCACATACTCAACTAACAATCTAAGATTGGGTTTTT
337358 GAAA
1 GAAA
337362 AGTTTATGCC
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
62 20 0.36
63 35 0.62
64 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (63 bp):
GAAATCAAACCCAATACTTGATATCAATCACATACTCAACTAACAATCTAAGATTGGGTTTTT
Found at i:342626 original size:38 final size:38
Alignment explanation
Indices: 342584--342659 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
342574 AACTCACAAG
342584 CTAGACCCTAAAGAAAAACAACCCCCCCCCCCAAGTCA
1 CTAGACCCTAAAGAAAAACAACCCCCCCCCCCAAGTCA
342622 CTAGACCCTAAAGAAAAACAACCCCCCCCCCCAAGTCA
1 CTAGACCCTAAAGAAAAACAACCCCCCCCCCCAAGTCA
342660 AGACCTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.45, G:0.08, T:0.08
Consensus pattern (38 bp):
CTAGACCCTAAAGAAAAACAACCCCCCCCCCCAAGTCA
Found at i:345615 original size:16 final size:16
Alignment explanation
Indices: 345579--345620 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
345569 TAAATTTTTT
345579 TATT-AATTGTATATAA
1 TATTAAATT-TATATAA
*
345595 T-TTAAATTTATATGA
1 TATTAAATTTATATAA
345610 TATTAAATTTA
1 TATTAAATTTA
345621 ATTTTCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (16 bp):
TATTAAATTTATATAA
Found at i:348886 original size:10 final size:11
Alignment explanation
Indices: 348860--348891 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
348850 TTTAATTAAA
348860 ATTTTTAATTG
1 ATTTTTAATTG
348871 ATTTTTAATTG
1 ATTTTTAATTG
*
348882 ATTTTAAATT
1 ATTTTTAATT
348892 TAAATTTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (11 bp):
ATTTTTAATTG
Found at i:350268 original size:30 final size:30
Alignment explanation
Indices: 350219--350356 Score: 199
Period size: 30 Copynumber: 4.6 Consensus size: 30
350209 AAAATGCCCA
*
350219 AAAATTA-TTTTTGACCCCAAAAC-TTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCT
*
350247 AAAAATTACATTTTCACCCCAAAACTTTTCT
1 -AAAATTACATTTTGACCCCAAAACTTTTCT
* *
350278 AAAATTACATTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCT
350308 AAAATTACATTTTGACCCCAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCT
* *
350338 AAAATTGCATTTTGCCCCC
1 AAAATTACATTTTGACCCC
350357 GATTTCACCA
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
29 7 0.07
30 86 0.88
31 5 0.05
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCT
Found at i:350379 original size:30 final size:30
Alignment explanation
Indices: 350345--350431 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
350335 TCTAAAATTG
350345 CATTTTGCCCCCGATTTCACCAAAAATTAC
1 CATTTTGCCCCCGATTTCACCAAAAATTAC
* * * *
350375 CATTTTACCCCTGAATTT--CCTAAAA-TCC
1 CATTTTGCCCCCG-ATTTCACCAAAAATTAC
* *
350403 CATTTTCGGCTCCGATTTCACCAAAAATT
1 CATTTT-GCCCCCGATTTCACCAAAAATT
350432 TCATTTTTAC
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
28 12 0.28
29 9 0.21
30 17 0.40
31 5 0.12
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (30 bp):
CATTTTGCCCCCGATTTCACCAAAAATTAC
Found at i:350379 original size:60 final size:58
Alignment explanation
Indices: 350247--350443 Score: 184
Period size: 60 Copynumber: 3.3 Consensus size: 58
350237 AAAACTTTCT
*** *
350247 AAAAATTACATTTTCACCCCAAAACTTTTCTAAAATTACATTTTGACCCTAAAACTTT-TCC
1 AAAAATTACATTTT-ACCCCAAAACTTTTCTAAAATTACATTTTG-CCC-CCGA-TTTCACC
*
350308 -AAAATTACATTTTGACCCCAAAACTTTTCTAAAATTGCATTTTGCCCCCGATTTCACC
1 AAAAATTACATTTT-ACCCCAAAACTTTTCTAAAATTACATTTTGCCCCCGATTTCACC
** * ** * *
350366 AAAAATTACCATTTTACCCCTGAA-TTTCCTAAAATCCCATTTTCGGCTCCGATTTCACC
1 AAAAATTA-CATTTTACCCCAAAACTTTTCTAAAATTACATTTT-GCCCCCGATTTCACC
*
350425 AAAAATTTCATTTTTACCC
1 AAAAATTACA-TTTTACCC
350444 TCGGAAGTTA
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
57 3 0.03
58 21 0.18
59 45 0.38
60 48 0.41
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.36
Consensus pattern (58 bp):
AAAAATTACATTTTACCCCAAAACTTTTCTAAAATTACATTTTGCCCCCGATTTCACC
Found at i:354651 original size:2 final size:2
Alignment explanation
Indices: 354646--354671 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
354636 ATGCAAAAAG
354646 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
354672 GAAAATACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:364189 original size:4 final size:4
Alignment explanation
Indices: 364182--364206 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
364172 TTCATTCTAT
364182 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
364207 TATTTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:364264 original size:22 final size:22
Alignment explanation
Indices: 364230--364280 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
364220 ATTAAAAAGT
*
364230 AAATTAATTATTTTTATTA-AAA
1 AAATT-ATTATTTGTATTATAAA
*
364252 AAATTATTAATTTGTATTATTAA
1 AAATTATT-ATTTGTATTATAAA
364275 AAATTA
1 AAATTA
364281 ACGTAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 14 0.56
23 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AAATTATTATTTGTATTATAAA
Found at i:370822 original size:13 final size:13
Alignment explanation
Indices: 370804--370832 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
370794 AGAATGATTG
370804 CCAATGCCATACA
1 CCAATGCCATACA
370817 CCAATGCCATACA
1 CCAATGCCATACA
370830 CCA
1 CCA
370833 CTACAACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.41, G:0.07, T:0.14
Consensus pattern (13 bp):
CCAATGCCATACA
Found at i:370941 original size:13 final size:13
Alignment explanation
Indices: 370925--370958 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
370915 TAGATTTATT
370925 TTTTATATTTTAA
1 TTTTATATTTTAA
*
370938 TTTTATCATTTTAT
1 TTTTAT-ATTTTAA
370952 TTTTATA
1 TTTTATA
370959 ATGTCATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTATATTTTAA
Found at i:371212 original size:13 final size:13
Alignment explanation
Indices: 371194--371220 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
371184 AGACATTGGC
371194 TCATTAGTAAGGT
1 TCATTAGTAAGGT
371207 TCATTAGTAAGGT
1 TCATTAGTAAGGT
371220 T
1 T
371221 GAAGCTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TCATTAGTAAGGT
Found at i:388772 original size:15 final size:15
Alignment explanation
Indices: 388754--388782 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
388744 TGCATTATGG
388754 TTTTTGTTTTTATTC
1 TTTTTGTTTTTATTC
388769 TTTTTGTTTTTATT
1 TTTTTGTTTTTATT
388783 ATAACGTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (15 bp):
TTTTTGTTTTTATTC
Found at i:394653 original size:5 final size:5
Alignment explanation
Indices: 394643--394670 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
394633 CACTTTATCT
394643 CCCGC CCCGC CCCGC CCCGC CCCGC CCC
1 CCCGC CCCGC CCCGC CCCGC CCCGC CCC
394671 AAATTTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.82, G:0.18, T:0.00
Consensus pattern (5 bp):
CCCGC
Found at i:397122 original size:20 final size:21
Alignment explanation
Indices: 397056--397134 Score: 58
Period size: 20 Copynumber: 4.0 Consensus size: 21
397046 TTGATGATAG
* * *
397056 TAATTAATG-TTTAGTAACAA
1 TAATAAATGCTTTAATAATAA
* *
397076 TATTAAATGCTTTAATAATAT
1 TAATAAATGCTTTAATAATAA
*
397097 TAATAAATG-TTTTATAATAA
1 TAATAAATGCTTTAATAATAA
* *
397117 TGAT-AAT-CATTAATAATA
1 TAATAAATGCTTTAATAATA
397135 TTTTTAATAA
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
19 11 0.24
20 19 0.41
21 16 0.35
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATAAATGCTTTAATAATAA
Found at i:397129 original size:30 final size:30
Alignment explanation
Indices: 397090--397147 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
397080 AAATGCTTTA
397090 ATAATATTAATAA-ATGTTTT-ATAATAATG
1 ATAATATTAATAATAT-TTTTAATAATAATG
397119 ATAATCATTAATAATATTTTTAATAATAA
1 ATAAT-ATTAATAATATTTTTAATAATAA
397148 AAAAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 5 0.19
30 12 0.46
31 9 0.35
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (30 bp):
ATAATATTAATAATATTTTTAATAATAATG
Found at i:398236 original size:30 final size:30
Alignment explanation
Indices: 398181--398237 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
398171 TGAACTATCC
* *
398181 AAAAATTATATTTTGACCTCAAAACTTTTT
1 AAAAATTACATTTTGACCCCAAAACTTTTT
* *
398211 AAAAATTACATTTTTACCCCCAAACTT
1 AAAAATTACATTTTGACCCCAAAACTT
398238 CCAAAATTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.39
Consensus pattern (30 bp):
AAAAATTACATTTTGACCCCAAAACTTTTT
Found at i:398270 original size:29 final size:30
Alignment explanation
Indices: 398238--398388 Score: 106
Period size: 29 Copynumber: 5.2 Consensus size: 30
398228 CCCCAAACTT
*
398238 CCAAAATT-CCATTTTTAATCCTGATTTCA
1 CCAAAATTACCATTTTTAACCCTGATTTCA
* * *
398267 CCAAAATTATCA-TTTTACCCCCTAAACTTT--
1 CCAAAATTACCATTTTTA-ACCCT-GA-TTTCA
*
398297 CCAAAATT-CCATTTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTTAACCCTGATTTCA
* *
398326 CCAAAATTACCA-TTTTACCCCTAAACTTT--
1 CCAAAATTACCATTTTTAACCCT-GA-TTTCA
* *
398355 CCAAAA--CCCATTTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTTAACCCTGATTTCA
398383 CCAAAA
1 CCAAAA
398389 ATCACCGTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
26 3 0.03
27 7 0.07
28 15 0.16
29 40 0.43
30 22 0.23
31 4 0.04
32 3 0.03
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34
Consensus pattern (30 bp):
CCAAAATTACCATTTTTAACCCTGATTTCA
Found at i:398301 original size:30 final size:29
Alignment explanation
Indices: 398212--398360 Score: 100
Period size: 29 Copynumber: 5.1 Consensus size: 29
398202 AAACTTTTTA
*
398212 AAAATTA-CATTTTTACCCCCAAAC-TTCC
1 AAAATTACCA-TTTTACCCCTAAACTTTCC
** *
398240 AAAATT-CCATTTTTAATCCT-GA-TTTCACC
1 AAAATTACCA-TTTTACCCCTAAACTTT--CC
*
398269 AAAATTATCATTTTACCCCCTAAACTTTCC
1 AAAATTACCATTTTA-CCCCTAAACTTTCC
*
398299 AAAATT-CCATTTTTAACCCC--GA-TTTCACC
1 AAAATTACCA-TTTT-ACCCCTAAACTTT--CC
398328 AAAATTACCATTTTACCCCTAAACTTTCC
1 AAAATTACCATTTTACCCCTAAACTTTCC
398357 AAAA
1 AAAA
398361 CCCATTTTTA
Statistics
Matches: 94, Mismatches: 11, Indels: 31
0.69 0.08 0.23
Matches are distributed among these distances:
27 6 0.06
28 22 0.23
29 33 0.35
30 25 0.27
31 5 0.05
32 3 0.03
ACGTcount: A:0.35, C:0.29, G:0.01, T:0.35
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCTAAACTTTCC
Found at i:398389 original size:29 final size:28
Alignment explanation
Indices: 398305--398389 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 28
398295 TTCCAAAATT
398305 CCATTTTTAACCCCGATTTCACCAAAATTA
1 CCATTTTTAACCCCGATTTCACCAAAA--A
* *
398335 CCA-TTTT-ACCCCTAAACTTT--CCAAAAC
1 CCATTTTTAACCCC--GA-TTTCACCAAAAA
398362 CCATTTTTAACCCCGATTTCACCAAAAA
1 CCATTTTTAACCCCGATTTCACCAAAAA
398390 TCACCGTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
26 3 0.07
27 4 0.09
28 15 0.34
29 15 0.34
30 4 0.09
31 3 0.07
ACGTcount: A:0.34, C:0.33, G:0.02, T:0.31
Consensus pattern (28 bp):
CCATTTTTAACCCCGATTTCACCAAAAA
Found at i:398542 original size:59 final size:59
Alignment explanation
Indices: 398211--398522 Score: 386
Period size: 58 Copynumber: 5.4 Consensus size: 59
398201 AAAACTTTTT
* *
398211 AAAAATTA-CATTTTTACCCCCAAAC-TTCCAAAATTCCATTTTTAATCCTGATTTCACC
1 AAAAATTACCA-TTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
*
398269 -AAAATTATCATTTTACCCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCC-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* *
398328 -AAAATTACCATTTTACCCCTAAACTTTCCAAAA-CCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * * * * * * ** *
398385 AAAAATCACCGTTTTATCCTCGAACTTTCCAAAA-CCCATTTTTAGCCTTGGTTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * *
398443 AAAAATTATCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
398502 AAAAATTA-CATTGTTACCCCC
1 AAAAATTACCATT-TTACCCCC
398523 GGAGGTCAAA
Statistics
Matches: 222, Mismatches: 26, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
57 40 0.18
58 98 0.44
59 84 0.38
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:406567 original size:12 final size:12
Alignment explanation
Indices: 406537--406583 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
406527 TCAACTTTTA
406537 ATTAAATAAATT
1 ATTAAATAAATT
406549 ATCTAAA-AAATTT
1 AT-TAAATAAA-TT
406562 ATTAAATAAATT
1 ATTAAATAAATT
406574 ATTAAA-AAAT
1 ATTAAATAAAT
406584 ATATCAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 4 0.12
12 17 0.53
13 11 0.34
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (12 bp):
ATTAAATAAATT
Found at i:406568 original size:25 final size:24
Alignment explanation
Indices: 406537--406583 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
406527 TCAACTTTTA
406537 ATTAAATAAATTATCTAAAAAATTT
1 ATTAAATAAATTAT-TAAAAAATTT
406562 ATTAAATAAATTATTAAAAAAT
1 ATTAAATAAATTATTAAAAAAT
406584 ATATCAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATTAAATAAATTATTAAAAAATTT
Found at i:407170 original size:2 final size:2
Alignment explanation
Indices: 407158--407188 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
407148 TTACATCATA
*
407158 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
407189 ACTAGATAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:438686 original size:55 final size:55
Alignment explanation
Indices: 438623--438731 Score: 182
Period size: 55 Copynumber: 2.0 Consensus size: 55
438613 TACAGTTTAA
* * * *
438623 GTTTGGAGTTTATGGTTATCCCTCTCAATAATGTTATTTATAAGGTTCGACACAC
1 GTTTGGAGTTTATGGCTATCCCTCTCAACAATGTTATTTACAAGGTTCAACACAC
438678 GTTTGGAGTTTATGGCTATCCCTCTCAACAATGTTATTTACAAGGTTCAACACA
1 GTTTGGAGTTTATGGCTATCCCTCTCAACAATGTTATTTACAAGGTTCAACACA
438732 TTTTCTTTTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (55 bp):
GTTTGGAGTTTATGGCTATCCCTCTCAACAATGTTATTTACAAGGTTCAACACAC
Found at i:447637 original size:2 final size:2
Alignment explanation
Indices: 447630--447669 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
447620 CTATACATAC
447630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
447670 GCAAATGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:449154 original size:16 final size:16
Alignment explanation
Indices: 449133--449166 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
449123 AACTTAGAAA
449133 AAAAAGTTCAAGCTCT
1 AAAAAGTTCAAGCTCT
449149 AAAAAGTTCAAGCTCT
1 AAAAAGTTCAAGCTCT
449165 AA
1 AA
449167 CGTGAGAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (16 bp):
AAAAAGTTCAAGCTCT
Found at i:451359 original size:31 final size:33
Alignment explanation
Indices: 451309--451390 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
451299 ATTCACATTT
*
451309 TAATCACTTAA-T-TTTAAAAAATT-A-CAAAA
1 TAATCACTAAATTATTTAAAAAATTCATCAAAA
*
451338 TAATCACTAAATTATTTAAAAAAATTCATCTAAA
1 TAATCACTAAATTATTT-AAAAAATTCATCAAAA
*
451372 TCA-CACTAAATTA-TTAAAA
1 TAATCACTAAATTATTTAAAA
451391 TCATTACTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 10 0.22
30 1 0.02
31 7 0.16
32 10 0.22
33 11 0.24
34 6 0.13
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (33 bp):
TAATCACTAAATTATTTAAAAAATTCATCAAAA
Found at i:451699 original size:21 final size:19
Alignment explanation
Indices: 451674--451713 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
451664 CAATGACTTA
*
451674 AATAATTTTTTTGAATAATTT
1 AATAATTATTTT--ATAATTT
451695 AATAATTATTTTATAATTT
1 AATAATTATTTTATAATTT
451714 TGAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
AATAATTATTTTATAATTT
Found at i:459419 original size:30 final size:31
Alignment explanation
Indices: 459351--459426 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 31
459341 GGATTAGTGA
*
459351 TTTAATATAAATATAAATATATATAATTATTT
1 TTTAACAT-AATATAAATATATATAATTATTT
*
459383 TTTAACAT-ATATAATTA-ATATAA-TATTTT
1 TTTAACATAATATAAATATATATAATTA-TTT
459412 TTATAACATAATATA
1 TT-TAACATAATATA
459427 TTCAGGTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 2 0.05
29 11 0.28
30 14 0.36
31 5 0.13
32 7 0.18
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (31 bp):
TTTAACATAATATAAATATATATAATTATTT
Found at i:475859 original size:35 final size:35
Alignment explanation
Indices: 475806--475878 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
475796 GGAGGTTATT
475806 TCTTTTTCCTTTGCTAACAGGTAAGATTTAAGATG
1 TCTTTTTCCTTTGCTAACAGGTAAGATTTAAGATG
* *
475841 TCTTTTTCTTTTGTTAACAGGTAAGATTTAAGATG
1 TCTTTTTCCTTTGCTAACAGGTAAGATTTAAGATG
475876 TCT
1 TCT
475879 ATGCAATAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.47
Consensus pattern (35 bp):
TCTTTTTCCTTTGCTAACAGGTAAGATTTAAGATG
Found at i:478457 original size:17 final size:17
Alignment explanation
Indices: 478435--478473 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
478425 CTTCACCTTG
*
478435 ACAAGAATTCTCT-ACGA
1 ACAAGAACTCT-TAACGA
478452 ACAAGAACTCTTAACGA
1 ACAAGAACTCTTAACGA
478469 ACAAG
1 ACAAG
478474 TTCTCCATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.18
Consensus pattern (17 bp):
ACAAGAACTCTTAACGA
Found at i:482477 original size:23 final size:23
Alignment explanation
Indices: 482451--482579 Score: 134
Period size: 23 Copynumber: 5.5 Consensus size: 23
482441 AGTGCTGGGC
482451 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* * *
482474 AACAGAGAGTACACAAAGTACTA
1 AACAGAGAGCACACACAGTGCTA
* * * *
482497 ATCAGAAAGTACACAAAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* *
482520 ATCAGAGGGCACACACAGTGCTAA
1 AACAGAGAGCACACACAGTGCT-A
*
482544 TAACAGAGAGCACGAGAC-GTGCTA
1 -AACAGAGAGCAC-ACACAGTGCTA
482568 AACAGAGAGCAC
1 AACAGAGAGCAC
482580 GCTAGTGTTC
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
23 70 0.78
24 2 0.02
25 15 0.17
26 3 0.03
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (23 bp):
AACAGAGAGCACACACAGTGCTA
Found at i:490261 original size:12 final size:12
Alignment explanation
Indices: 490234--490273 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
490224 GAATCATGTG
490234 ACATGAAAGTAATA
1 ACATG-AAG-AATA
490248 ACATGAAGAATA
1 ACATGAAGAATA
490260 ACATGAAGAATA
1 ACATGAAGAATA
490272 AC
1 AC
490274 GAAAATTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 18 0.69
13 3 0.12
14 5 0.19
ACGTcount: A:0.57, C:0.10, G:0.15, T:0.17
Consensus pattern (12 bp):
ACATGAAGAATA
Found at i:495295 original size:3 final size:3
Alignment explanation
Indices: 495287--495324 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
495277 TGTTGATGCT
495287 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
495325 GGATGGTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:503447 original size:2 final size:2
Alignment explanation
Indices: 503436--503468 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
503426 CTCTGTCCCC
503436 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
503469 TCTTGGATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:508129 original size:16 final size:16
Alignment explanation
Indices: 508110--508146 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
508100 GAGTTGAATC
*
508110 ATTTTGAATTCAGGTT
1 ATTTTGAATTCAAGTT
*
508126 ATTTTGGATTCAAGTT
1 ATTTTGAATTCAAGTT
508142 ATTTT
1 ATTTT
508147 TTGGTTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.54
Consensus pattern (16 bp):
ATTTTGAATTCAAGTT
Found at i:514155 original size:17 final size:17
Alignment explanation
Indices: 514133--514171 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
514123 AGGTGGAGAG
* * *
514133 CTTGTTCGTTGAGAGTT
1 CTTGTTAGTAGAGAATT
514150 CTTGTTAGTAGAGAATT
1 CTTGTTAGTAGAGAATT
514167 CTTGT
1 CTTGT
514172 CAAGGTAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (17 bp):
CTTGTTAGTAGAGAATT
Done.