Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 103 of 193
Found at i:33098970 original size:21 final size:20
Alignment explanation
Indices: 33098946--33098994 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
33098936 GTTGTGGCTA
33098946 CATCTGATTCTGGTGTGAATG
1 CATCTGATT-TGGTGTGAATG
* * *
33098967 CATCTAGCTTTGTTGTGGATG
1 CATCT-GATTTGGTGTGAATG
33098988 CATCTGA
1 CATCTGA
33098995 GTGTGCTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 19 0.83
22 3 0.13
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (20 bp):
CATCTGATTTGGTGTGAATG
Found at i:33105362 original size:20 final size:20
Alignment explanation
Indices: 33105339--33105379 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
33105329 TAATAGGGTA
33105339 ACCAATGAATCAATATATAT
1 ACCAATGAATCAATATATAT
33105359 ACCAATGAATCAATATATAT
1 ACCAATGAATCAATATATAT
33105379 A
1 A
33105380 TGTTCGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (20 bp):
ACCAATGAATCAATATATAT
Found at i:33106294 original size:2 final size:2
Alignment explanation
Indices: 33106287--33106319 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
33106277 TTATTAATTA
33106287 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
33106320 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:33112841 original size:9 final size:9
Alignment explanation
Indices: 33112814--33112848 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
33112804 GTTAAATAAT
33112814 AAAAAGAGA
1 AAAAAGAGA
33112823 AAAGAGAGAGA
1 AAA-A-AGAGA
33112834 AAAAAGAGA
1 AAAAAGAGA
33112843 AAAAAG
1 AAAAAG
33112849 CCACCGCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 14 0.58
10 2 0.08
11 8 0.33
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (9 bp):
AAAAAGAGA
Found at i:33122102 original size:19 final size:19
Alignment explanation
Indices: 33122078--33122145 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
33122068 AATTGTTATG
33122078 TTTAAGTTTATTAGGTATA
1 TTTAAGTTTATTAGGTATA
* *
33122097 TTTAAGTTGTGAAATT-GTTATG
1 TTTAAGTT-T---ATTAGGTATA
*
33122119 TTTAAGTTTGTTAGGTATA
1 TTTAAGTTTATTAGGTATA
33122138 TTTAAGTT
1 TTTAAGTT
33122146 GTGAAATCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
18 2 0.05
19 20 0.51
20 1 0.03
21 1 0.03
22 12 0.31
23 3 0.08
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53
Consensus pattern (19 bp):
TTTAAGTTTATTAGGTATA
Found at i:33122125 original size:41 final size:41
Alignment explanation
Indices: 33122068--33122164 Score: 176
Period size: 41 Copynumber: 2.4 Consensus size: 41
33122058 ATTTGTTTGG
33122068 AATTGTTATGTTTAAGTTTATTAGGTATATTTAAGTTGTGA
1 AATTGTTATGTTTAAGTTTATTAGGTATATTTAAGTTGTGA
*
33122109 AATTGTTATGTTTAAGTTTGTTAGGTATATTTAAGTTGTGA
1 AATTGTTATGTTTAAGTTTATTAGGTATATTTAAGTTGTGA
*
33122150 AATCGTTATGTTTAA
1 AATTGTTATGTTTAA
33122165 TTTGTTTGGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.29, C:0.01, G:0.20, T:0.51
Consensus pattern (41 bp):
AATTGTTATGTTTAAGTTTATTAGGTATATTTAAGTTGTGA
Found at i:33130152 original size:38 final size:38
Alignment explanation
Indices: 33130095--33130178 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
33130085 ACAGCAACTA
* * * *
33130095 CAATTCTGGGCATGCTCATGTAGTGATAATTTTGGGCG
1 CAATTCTGGACATGCTCATGCAGTGACAATTCTGGGCG
*
33130133 TAATTCTGGACAT-CGTCATGCAGTGACAATTCTGGGCG
1 CAATTCTGGACATGC-TCATGCAGTGACAATTCTGGGCG
33130171 CAATTCTG
1 CAATTCTG
33130179 AATAGACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 1 0.03
38 38 0.97
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (38 bp):
CAATTCTGGACATGCTCATGCAGTGACAATTCTGGGCG
Found at i:33133978 original size:195 final size:195
Alignment explanation
Indices: 33133571--33134016 Score: 533
Period size: 195 Copynumber: 2.3 Consensus size: 195
33133561 AACCGACGCG
* * *
33133571 ATGGCTAGGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGAGTCGGG
1 ATGGCTGGGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTCGAG
*
33133636 AAATGAGAAAAGAATCCAAGAATGGATTACAGGCCCTACGATGGCTGAGATTTATGCATAAGTGC
66 AAATGAGAAAAGAATCCAAGAATGGATTACAGGCCCTACGATGGCTGAGATCTATGCATAAGTGC
* * * * * * *
33133701 ATATTCTCGATAGCTCGTGTGAGTACCATCGTTAGGGAACTGTTATATGCACAGATACCGTATCG
131 ATACTCTCAATAGCTCGTGTGAGCACCATCGTTAGGGAACAGTTATATACACAGATACCGTACCA
* * * *
33133766 ATGGCTGAGGAACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATTGTGACTCGAG
1 ATGGCTGGGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTCGAG
* * * * * * *
33133831 AAA-GAGATATGGATCCTA-AATGGATTATAGGCCCTACGATGGCT-AGGA-CTATGCTTTA-TG
66 AAATGAGAAAAGAATCCAAGAATGGATTACAGGCCCTACGATGGCTGA-GATCTATGCATAAGTG
* ** * *
33133891 CATACTCTCAATATCTCGTGTGAGCAGTATCGTTAGGGAACAGTTTATAGTACAGACAGGTATCG
130 CATACTCTCAATAGCTCGTGTGAGCACCATCGTTAGGGAACAG-TTATA-TAC--ACAGATACCG
33133956 TACCA
191 TACCA
* * * *
33133961 ATGGTTGGGGTACCGCATACGTTGCGAGTCCTCGACAACTCATGTGAGCAGCATCG
1 ATGGCTGGGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCG
33134017 AGTATTAGTA
Statistics
Matches: 211, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
191 38 0.18
192 13 0.06
193 29 0.14
194 11 0.05
195 120 0.57
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (195 bp):
ATGGCTGGGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTCGAG
AAATGAGAAAAGAATCCAAGAATGGATTACAGGCCCTACGATGGCTGAGATCTATGCATAAGTGC
ATACTCTCAATAGCTCGTGTGAGCACCATCGTTAGGGAACAGTTATATACACAGATACCGTACCA
Found at i:33145095 original size:21 final size:23
Alignment explanation
Indices: 33145058--33145104 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
33145048 GTCAAGTAAG
33145058 ATTTTGTTTTTTCTCTCAACTAT
1 ATTTTGTTTTTTCTCTCAACTAT
33145081 ATTTTGTTTTTTCTCTCAACTAT
1 ATTTTGTTTTTTCTCTCAACTAT
33145104 A
1 A
33145105 CCATTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.04, T:0.60
Consensus pattern (23 bp):
ATTTTGTTTTTTCTCTCAACTAT
Found at i:33145111 original size:21 final size:22
Alignment explanation
Indices: 33145064--33145111 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
33145054 TAAGATTTTG
***
33145064 TTTTTTCTCTCAACTATATTTTG
1 TTTTTTCTCTCAACTATA-TCCA
33145087 TTTTTTCTCTCAACTATA-CCA
1 TTTTTTCTCTCAACTATATCCA
33145108 TTTT
1 TTTT
33145112 ATTGTGGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
23 18 0.82
ACGTcount: A:0.19, C:0.21, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTTCTCTCAACTATATCCA
Found at i:33145144 original size:28 final size:28
Alignment explanation
Indices: 33145109--33145166 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
33145099 ACTATACCAT
*
33145109 TTTATTGTGGAATTCCTTGTGTGATCAA
1 TTTATTGTGGAATTCCTGGTGTGATCAA
33145137 TTTATTGTGGAATTCCTGGTGTGATCAA
1 TTTATTGTGGAATTCCTGGTGTGATCAA
33145165 TT
1 TT
33145167 GAGAAAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.10, G:0.22, T:0.47
Consensus pattern (28 bp):
TTTATTGTGGAATTCCTGGTGTGATCAA
Found at i:33147212 original size:80 final size:80
Alignment explanation
Indices: 33147006--33147327 Score: 400
Period size: 80 Copynumber: 4.0 Consensus size: 80
33146996 GAACAGTAAA
* * * *
33147006 AATTCGTTGGTTAATCCAACCAGAGC-GGGCTCACTT-TCGCGGTTTAACCGCTAGGCACTAGTT
1 AATTCGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTTTATCCGCTAGGCACTAGGT
* *
33147069 GCCAAGATTTGACGG
66 GCCATGAATTGACGG
** * * * * *
33147084 ATTATTTTTTGGTCAAACCAACTAGAGCTAGGCTCATTTATCGTGGTTTATTCGCTAGGCACTAG
1 A--ATTCGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTTTATCCGCTAGGCACTAG
*
33147149 GTGCCATGAATTGACAG
64 GTGCCATGAATTGACGG
* * ** *
33147166 AATTCGTTGGTTAATCCGACTAGAGCTAGGCTCATTTATCGCGGTTTATCCATTAGGCACTGGGT
1 AATTCGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTTTATCCGCTAGGCACTAGGT
33147231 GCCATGAATTGACGG
66 GCCATGAATTGACGG
* **
33147246 AATTCGTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCGCGGTTTATCCGCTAGGCACCGGGT
1 AATTCGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTTTATCCGCTAGGCACTAGGT
33147311 -CCATGAATTGAC-G
66 GCCATGAATTGACGG
33147324 AATT
1 AATT
33147328 TGGTTGATGG
Statistics
Matches: 209, Mismatches: 31, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
78 6 0.03
79 12 0.06
80 147 0.70
81 8 0.04
82 36 0.17
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (80 bp):
AATTCGTTGGTTAATCCAACTAGAGCTAGGCTCACTTATCGCGGTTTATCCGCTAGGCACTAGGT
GCCATGAATTGACGG
Found at i:33149050 original size:24 final size:24
Alignment explanation
Indices: 33148989--33149051 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
33148979 TAGACTAATA
* *
33148989 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* *
33149013 AGAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
33149037 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
33149052 GATTATTTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:33151012 original size:24 final size:24
Alignment explanation
Indices: 33150951--33151013 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
33150941 TAGACTAATA
* *
33150951 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* *
33150975 AGAGTTTAATTGAAATAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
33150999 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
33151014 GATTATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:33151438 original size:100 final size:100
Alignment explanation
Indices: 33151265--33151465 Score: 357
Period size: 100 Copynumber: 2.0 Consensus size: 100
33151255 TAAAAGAAAG
*
33151265 AACATAAATAAGAACACATAAATGAGGTGAAAATATTTAATGTGCATTGATTTTACTGCCATTCA
1 AACATAAATAAGAACACATAAATGAGGTGAAAATATTTAATGTGCATCGATTTTACTGCCATTCA
*
33151330 TATGATAATTCACATGTATGTCACGTTAATAATTA
66 CATGATAATTCACATGTATGTCACGTTAATAATTA
* **
33151365 AACATAAATAGGAACACATAAATGAGGTGAAAATATTTAATGTGCATCGATTTTGTTGCCATTCA
1 AACATAAATAAGAACACATAAATGAGGTGAAAATATTTAATGTGCATCGATTTTACTGCCATTCA
33151430 CATGATAATTCACATGTATGTCACGTTAATAATTA
66 CATGATAATTCACATGTATGTCACGTTAATAATTA
33151465 A
1 A
33151466 TTATTTTTTA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (100 bp):
AACATAAATAAGAACACATAAATGAGGTGAAAATATTTAATGTGCATCGATTTTACTGCCATTCA
CATGATAATTCACATGTATGTCACGTTAATAATTA
Found at i:33152031 original size:17 final size:17
Alignment explanation
Indices: 33152011--33152057 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
33152001 TAATTTTTTG
33152011 ATTTTTATATATTTT-AA
1 ATTTTTATA-ATTTTCAA
33152028 ATTTTTAGTAATTTTCAA
1 ATTTTTA-TAATTTTCAA
*
33152046 CTTTTTATAATT
1 ATTTTTATAATT
33152058 AGAATTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (17 bp):
ATTTTTATAATTTTCAA
Found at i:33161940 original size:172 final size:172
Alignment explanation
Indices: 33161654--33161996 Score: 623
Period size: 172 Copynumber: 2.0 Consensus size: 172
33161644 AAATTGTACC
*
33161654 TACAGATTCACATTTCAAAAAGGATCAATTTACTTGAATTACCCTTTGGATAGAAGATTAAGCTC
1 TACAGATTCACATTTCAAAAAGGATCAATTTACTTGAATAACCCTTTGGATAGAAGATTAAGCTC
* *
33161719 TAGAGAGAATTAATAAAATGTAGAACAGCAAAAGTGCAAACCAAATAAACGACAAAAACTTGATA
66 TAGAGAGAATTAATAAAATGTAGAACAACAAAAGTGCAAACCAAATAAACAACAAAAACTTGATA
*
33161784 TTTAGAAGTTTAATGTACTTCATTATCTTATGACTTAAGAAG
131 TTCAGAAGTTTAATGTACTTCATTATCTTATGACTTAAGAAG
* *
33161826 TACAGATTTACATTTCAAAAATGATCAATTTACTTGAATAACCCTTTGGATAGAAGATTAAGCTC
1 TACAGATTCACATTTCAAAAAGGATCAATTTACTTGAATAACCCTTTGGATAGAAGATTAAGCTC
33161891 TAGAGAGAATTAATAAAATGTAGAACAACAAAAGTGCAAACCAAATAAACAACAAAAACTTGATA
66 TAGAGAGAATTAATAAAATGTAGAACAACAAAAGTGCAAACCAAATAAACAACAAAAACTTGATA
*
33161956 TTCAGAAGTTTAATGTACTTCATTATCTTATGGCTTAAGAA
131 TTCAGAAGTTTAATGTACTTCATTATCTTATGACTTAAGAA
33161997 AAAGGGGACT
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 164 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (172 bp):
TACAGATTCACATTTCAAAAAGGATCAATTTACTTGAATAACCCTTTGGATAGAAGATTAAGCTC
TAGAGAGAATTAATAAAATGTAGAACAACAAAAGTGCAAACCAAATAAACAACAAAAACTTGATA
TTCAGAAGTTTAATGTACTTCATTATCTTATGACTTAAGAAG
Found at i:33167604 original size:23 final size:23
Alignment explanation
Indices: 33167571--33167623 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
33167561 TTTATTTAAC
* *
33167571 TTGACTTGCAAACAATCTCTTCT
1 TTGACTAGCAAACAATCTCTTAT
**
33167594 TTGACTAGCAAGTAATCTCTTAT
1 TTGACTAGCAAACAATCTCTTAT
33167617 TTGACTA
1 TTGACTA
33167624 AAATACGAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (23 bp):
TTGACTAGCAAACAATCTCTTAT
Found at i:33169667 original size:20 final size:20
Alignment explanation
Indices: 33169642--33169686 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
33169632 TTTTCGATAG
33169642 AAATACATA-AGAATTTATAA
1 AAATACATACAGAATTT-TAA
*
33169662 AAATACATACTGAATTTTAA
1 AAATACATACAGAATTTTAA
33169682 AAATA
1 AAATA
33169687 TTAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (20 bp):
AAATACATACAGAATTTTAA
Found at i:33178225 original size:15 final size:15
Alignment explanation
Indices: 33178207--33178244 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
33178197 CCTCAACTAA
33178207 TTCTTTCTCAGCA-C
1 TTCTTTCTCAGCATC
33178221 TTTCTTTCTCAGCATC
1 -TTCTTTCTCAGCATC
33178237 TTCTTTCT
1 TTCTTTCT
33178245 TGATGTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.11, C:0.32, G:0.05, T:0.53
Consensus pattern (15 bp):
TTCTTTCTCAGCATC
Found at i:33206767 original size:17 final size:17
Alignment explanation
Indices: 33206747--33206789 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
33206737 AAATGAACTA
*
33206747 ACAAGTAAAATGCAACG
1 ACAACTAAAATGCAACG
* *
33206764 ACAACTAAAATGTAATG
1 ACAACTAAAATGCAACG
*
33206781 ACAATTAAA
1 ACAACTAAA
33206790 TGAGATGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.19
Consensus pattern (17 bp):
ACAACTAAAATGCAACG
Found at i:33214894 original size:8 final size:8
Alignment explanation
Indices: 33214878--33214918 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
33214868 AAAATAAGCA
*
33214878 ATGTTACG
1 ATGTGACG
33214886 ATGTGACG
1 ATGTGACG
33214894 ATGTGACG
1 ATGTGACG
33214902 ATGT--CG
1 ATGTGACG
33214908 ATGTGACG
1 ATGTGACG
33214916 ATG
1 ATG
33214919 ATACGAGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 6 0.20
8 24 0.80
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.29
Consensus pattern (8 bp):
ATGTGACG
Found at i:33214911 original size:14 final size:15
Alignment explanation
Indices: 33214878--33214924 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
33214868 AAAATAAGCA
*
33214878 ATGTTACGATGTGACG
1 ATGTGACGATGT-ACG
33214894 ATGTGACGATGT-CG
1 ATGTGACGATGTACG
33214908 ATGTGACGATGATACG
1 ATGTGACGATG-TACG
33214924 A
1 A
33214925 GATGGAATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 13 0.46
15 1 0.04
16 14 0.50
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.28
Consensus pattern (15 bp):
ATGTGACGATGTACG
Found at i:33217409 original size:52 final size:52
Alignment explanation
Indices: 33217337--33217559 Score: 347
Period size: 52 Copynumber: 4.3 Consensus size: 52
33217327 TATGTATCTA
**
33217337 CGTGAGTATATGAATCCTTTACGGATTATGAGGTCTAATGGCTATGTGTCAT
1 CGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTCAT
* *
33217389 CGTGAGTATATGAATACTTTACGGATTATGAGGTCTGATGGCTATGTGTCAT
1 CGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTCAT
* **
33217441 TGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTTGT
1 CGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTCAT
* * *
33217493 CGTGAGTATATGAATCCTTCATGGATTATGAGGTCCGATGGCTATGTTTCAT
1 CGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTCAT
*
33217545 CGTAAGTATATGAAT
1 CGTGAGTATATGAAT
33217560 GAAATGAAAT
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 157 1.00
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.37
Consensus pattern (52 bp):
CGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTGTCAT
Found at i:33230543 original size:18 final size:18
Alignment explanation
Indices: 33230503--33230545 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
33230493 GTAGGAACAT
* * *
33230503 CATGATCAGATGTAGTCA
1 CATGCTCAGATGCAATCA
*
33230521 TATGCTCAGATGCAATCA
1 CATGCTCAGATGCAATCA
33230539 CATGCTC
1 CATGCTC
33230546 GTATACAGCC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (18 bp):
CATGCTCAGATGCAATCA
Found at i:33235744 original size:17 final size:17
Alignment explanation
Indices: 33235724--33235762 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
33235714 TAAAACAAAT
*
33235724 AAAATGTAGAGACAATA
1 AAAATGCAGAGACAATA
* *
33235741 AAAATGCAGTGACAATT
1 AAAATGCAGAGACAATA
33235758 AAAAT
1 AAAAT
33235763 AAATGCATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.21
Consensus pattern (17 bp):
AAAATGCAGAGACAATA
Found at i:33253534 original size:12 final size:12
Alignment explanation
Indices: 33253517--33253547 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
33253507 AAAGAACAAG
33253517 AGGATGAAGAGA
1 AGGATGAAGAGA
*
33253529 AGGATGAAGCGA
1 AGGATGAAGAGA
33253541 AGGATGA
1 AGGATGA
33253548 TGAACACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.42, T:0.10
Consensus pattern (12 bp):
AGGATGAAGAGA
Found at i:33259239 original size:41 final size:43
Alignment explanation
Indices: 33259153--33259335 Score: 112
Period size: 41 Copynumber: 4.1 Consensus size: 43
33259143 GTTGTATATA
* *
33259153 TATTTAAAACTCTGTTAAATAATAATTTCTATTAAATTATCTTT
1 TATTTAAAACTCTGTTAAATAATAA-TTCAATTAAATTATATTT
* *
33259197 TATTTAGAACTCTTTTAAATAATAA-T-AATTAAATTCTATTTTAATTAT
1 TATTTAAAACTCTGTTAAATAATAATTCAATTAAA-T-TA---T-ATT-T
* * *
33259245 TATTTATCTAAAACTCT-TTGAATTAA-AATTCTATTTAA-TATATTT
1 TA--T-T-TAAAACTCTGTT-AAATAATAATTCAATTAAATTATATTT
* *
33259290 TATTTAAAACTCTTTTAAATAATAA-T-AATTAAATTCTATTT
1 TATTTAAAACTCTGTTAAATAATAATTCAATTAAATTATATTT
33259331 T-TTTA
1 TATTTA
33259336 TGTGATAAGG
Statistics
Matches: 110, Mismatches: 12, Indels: 38
0.69 0.08 0.24
Matches are distributed among these distances:
40 9 0.08
41 28 0.25
42 7 0.06
43 3 0.03
44 23 0.21
45 3 0.03
46 4 0.04
47 3 0.03
48 3 0.03
50 3 0.03
51 5 0.05
52 14 0.13
53 5 0.05
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.51
Consensus pattern (43 bp):
TATTTAAAACTCTGTTAAATAATAATTCAATTAAATTATATTT
Found at i:33259319 original size:93 final size:96
Alignment explanation
Indices: 33259157--33259331 Score: 277
Period size: 93 Copynumber: 1.9 Consensus size: 96
33259147 TATATATATT
* *
33259157 TAAAACTCTGTTAAATAATAATTTCTATTAAATTATCTTTTATTTAGAACTCTTTTAAATAATAA
1 TAAAACTCTGTTAAATAATAATTTCTATTAAATTATATTTTATTTAAAACTCTTTTAAATAATAA
33259222 TAATTAAATTCTATTTTAATTATTATTTATC
66 TAATTAAATTCTATTTTAATTATTATTTATC
* *
33259253 TAAAACTCT-TTGAATTAA-AA-TTCTATTTAA-TATATTTTATTTAAAACTCTTTTAAATAATA
1 TAAAACTCTGTT-AAATAATAATTTCTATTAAATTATATTTTATTTAAAACTCTTTTAAATAATA
33259314 ATAATTAAATTCTATTTT
65 ATAATTAAATTCTATTTT
33259332 TTTATGTGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
93 47 0.64
94 9 0.12
95 4 0.05
96 14 0.19
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.50
Consensus pattern (96 bp):
TAAAACTCTGTTAAATAATAATTTCTATTAAATTATATTTTATTTAAAACTCTTTTAAATAATAA
TAATTAAATTCTATTTTAATTATTATTTATC
Found at i:33260983 original size:93 final size:96
Alignment explanation
Indices: 33260824--33261017 Score: 331
Period size: 93 Copynumber: 2.0 Consensus size: 96
33260814 ATGAAGAAGA
33260824 AAAGAGACAAAAACACGATTAATGAGGTGGGTGCTATTGTTGCAAGAATTC-A-AT-TTATGGAT
1 AAAGAGACAAAAACACGATTAATGAGGTGGGTGCTATTGTTGCAAGAATTCAATATGTTATGGAT
33260886 TATGGATCGAAAAGGAACTGAAAATCAAGTT
66 TATGGATCGAAAAGGAACTGAAAATCAAGTT
33260917 AAAGAGACAAAAACACGATTAATGAGGTGGGTGCTATTGTTGCAAGAATTCAATTTATGGATTAT
1 AAAGAGACAAAAACACGATTAATGAGGTGGGTGCTATTGTTGCAAGAATTCAA--TAT-G-TTAT
33260982 GGATTATGGATCGAAAAGGAACTGAAAATCAAGTT
62 GGATTATGGATCGAAAAGGAACTGAAAATCAAGTT
33261017 A
1 A
33261018 TTGACCACTT
Statistics
Matches: 94, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
93 51 0.54
94 1 0.01
97 2 0.02
100 40 0.43
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (96 bp):
AAAGAGACAAAAACACGATTAATGAGGTGGGTGCTATTGTTGCAAGAATTCAATATGTTATGGAT
TATGGATCGAAAAGGAACTGAAAATCAAGTT
Found at i:33264756 original size:10 final size:11
Alignment explanation
Indices: 33264743--33264788 Score: 60
Period size: 10 Copynumber: 4.3 Consensus size: 11
33264733 GAAAAGTCAC
33264743 AAAAAG-AAAG
1 AAAAAGAAAAG
33264753 AAAAAG-AAAG
1 AAAAAGAAAAG
*
33264763 AAGAAGAAAAG
1 AAAAAGAAAAG
33264774 AGAAAAGAAAAG
1 A-AAAAGAAAAG
33264786 AAA
1 AAA
33264789 TATATTCCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
10 15 0.47
11 7 0.22
12 10 0.31
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:33272508 original size:16 final size:16
Alignment explanation
Indices: 33272480--33272526 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
33272470 ATTTATCATA
33272480 TTTTTTTCTCTTTTTC
1 TTTTTTTCTCTTTTTC
33272496 TTTTTCTTC-CTTTTTC
1 TTTTT-TTCTCTTTTTC
**
33272512 TCATTTT-TCTTTTTC
1 TTTTTTTCTCTTTTTC
33272527 AAGTGACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.33
16 15 0.56
17 3 0.11
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTCTCTTTTTC
Found at i:33272567 original size:16 final size:16
Alignment explanation
Indices: 33272546--33272580 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
33272536 AGAGATGTCA
33272546 TTGCATTACTGTACCT
1 TTGCATTACTGTACCT
*
33272562 TTGCATTACTTTACCT
1 TTGCATTACTGTACCT
33272578 TTG
1 TTG
33272581 TTCTCCCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.23, G:0.11, T:0.49
Consensus pattern (16 bp):
TTGCATTACTGTACCT
Found at i:33273485 original size:15 final size:16
Alignment explanation
Indices: 33273465--33273496 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
33273455 AGTCCTTCAT
33273465 TTCATTCTT-TTCTTC
1 TTCATTCTTCTTCTTC
33273480 TTCATTCTTCTTCTTC
1 TTCATTCTTCTTCTTC
33273496 T
1 T
33273497 GGCCATCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.28, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCATTCTTCTTCTTC
Found at i:33286059 original size:15 final size:16
Alignment explanation
Indices: 33286029--33286060 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
33286019 CTTAATAATC
33286029 ACTAAATAATTCACCT
1 ACTAAATAATTCACCT
33286045 ACTAAATAA-TCACCT
1 ACTAAATAATTCACCT
33286060 A
1 A
33286061 ATAATTACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (16 bp):
ACTAAATAATTCACCT
Found at i:33286104 original size:38 final size:38
Alignment explanation
Indices: 33286013--33286088 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
33286003 TATTTATTAT
* * *
33286013 TAATCACTTAATAATCACTAAATAATTCACCTACTAAA
1 TAATCACCTAATAATTACTAAATAATTCACCCACTAAA
33286051 TAATCACCTAATAATTACTAAATAATTCACCCACTAAA
1 TAATCACCTAATAATTACTAAATAATTCACCCACTAAA
33286089 ATCATCTAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.30
Consensus pattern (38 bp):
TAATCACCTAATAATTACTAAATAATTCACCCACTAAA
Found at i:33293476 original size:26 final size:27
Alignment explanation
Indices: 33293412--33293463 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
33293402 CTGACACAGA
* *
33293412 TGGAGGGTTTTGAAGTGGCGGCACCCT
1 TGGAGGATTTTGAAGTGACGGCACCCT
33293439 TGGAGGATTTTGAAGTGACGGCACC
1 TGGAGGATTTTGAAGTGACGGCACC
33293464 TTAGGGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.25
Consensus pattern (27 bp):
TGGAGGATTTTGAAGTGACGGCACCCT
Found at i:33293583 original size:29 final size:29
Alignment explanation
Indices: 33293550--33293610 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
33293540 GTTTTAGTTT
**
33293550 TTTACTAATTTAATACAAAAAAATATTTA
1 TTTACTAAAATAATACAAAAAAATATTTA
* *
33293579 TTTACTAAAATAATATAAAAAATTATTTA
1 TTTACTAAAATAATACAAAAAAATATTTA
33293608 TTT
1 TTT
33293611 TATTTGACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
TTTACTAAAATAATACAAAAAAATATTTA
Found at i:33293623 original size:35 final size:35
Alignment explanation
Indices: 33293575--33293646 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 35
33293565 CAAAAAAATA
33293575 TTTATTTACTAAAATAATA-TAAAAAATTATTTAT
1 TTTATTTACTAAAATAATATTAAAAAATTATTTAT
*
33293609 TTTATTTGACTAAAATAATATTAAAAAGTTATTTAT
1 TTTATTT-ACTAAAATAATATTAAAAAATTATTTAT
33293645 TT
1 TT
33293647 AACAAAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 7 0.20
35 12 0.34
36 16 0.46
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (35 bp):
TTTATTTACTAAAATAATATTAAAAAATTATTTAT
Found at i:33293659 original size:36 final size:35
Alignment explanation
Indices: 33293584--33293662 Score: 86
Period size: 36 Copynumber: 2.2 Consensus size: 35
33293574 ATTTATTTAC
* **** *
33293584 TAAAATAATATAAAAAATTATTTATTTTATTTGAC
1 TAAAATAATATAAAAAATTATTTATTTAACAAAAA
*
33293619 TAAAATAATATTAAAAAGTTATTTATTTAACAAAAA
1 TAAAATAATA-TAAAAAATTATTTATTTAACAAAAA
33293655 TAAAATAA
1 TAAAATAA
33293663 AATACATATC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 10 0.28
36 26 0.72
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (35 bp):
TAAAATAATATAAAAAATTATTTATTTAACAAAAA
Found at i:33296920 original size:14 final size:14
Alignment explanation
Indices: 33296898--33296949 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
33296888 TGTTTTAAAT
*
33296898 TTTAGGGTTTTAAG
1 TTTAAGGTTTTAAG
*
33296912 TTTAAGGTTTTATG
1 TTTAAGGTTTTAAG
* *
33296926 TTAAAGATTTTGAA-
1 TTTAAGGTTTT-AAG
33296940 TTTAAGGTTT
1 TTTAAGGTTT
33296950 AGGGTTTTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 29 0.97
15 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTTAAG
Found at i:33296969 original size:14 final size:14
Alignment explanation
Indices: 33296947--33297011 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
33296937 GAATTTAAGG
*
33296947 TTTAGGGTTTTAAA
1 TTTAAGGTTTTAAA
*
33296961 TTTAAGGTTTTGAA
1 TTTAAGGTTTTAAA
* * *
33296975 TATAATGTTTTTAA
1 TTTAAGGTTTTAAA
*
33296989 TTTAAGG-TTTAAGG
1 TTTAAGGTTTTAA-A
33297003 TTTAAGGTT
1 TTTAAGGTT
33297012 AAAAGTTTCA
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 4 0.10
14 35 0.88
15 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (14 bp):
TTTAAGGTTTTAAA
Found at i:33296972 original size:35 final size:34
Alignment explanation
Indices: 33296906--33296984 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 34
33296896 ATTTTAGGGT
**
33296906 TTTAAGTTTAAGGTTTTATGTTAAAGATTTTGAA
1 TTTAAGTTTAAGGTTTTAAATTAAAGATTTTGAA
* * *
33296940 TTTAAGGTTTAGGGTTTTAAATTTAAGGTTTTGAA
1 TTTAA-GTTTAAGGTTTTAAATTAAAGATTTTGAA
*
33296975 TATAATGTTT
1 TTTAA-GTTT
33296985 TTAATTTAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 5 0.14
35 32 0.86
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (34 bp):
TTTAAGTTTAAGGTTTTAAATTAAAGATTTTGAA
Found at i:33296991 original size:49 final size:49
Alignment explanation
Indices: 33296898--33297005 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
33296888 TGTTTTAAAT
* *
33296898 TTTAGGGTTTTAAGTTTAAGGTTTTATGTTAAAGATTTTGAATTTAAGG
1 TTTAGGGTTTTAAATTTAAGGTTTTATGATAAAGATTTTGAATTTAAGG
* *
33296947 TTTAGGGTTTTAAATTTAAGGTTTTGAAT-ATAATG-TTTTTAATTTAAGG
1 TTTAGGGTTTTAAATTTAAGGTTTT--ATGATAAAGATTTTGAATTTAAGG
*
33296996 TTTAAGGTTT
1 TTTAGGGTTT
33297006 AAGGTTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
49 46 0.88
50 4 0.08
51 2 0.04
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (49 bp):
TTTAGGGTTTTAAATTTAAGGTTTTATGATAAAGATTTTGAATTTAAGG
Found at i:33297074 original size:14 final size:14
Alignment explanation
Indices: 33297031--33297075 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
33297021 AAAATTGGGA
33297031 TTTTGAATTTAAGG
1 TTTTGAATTTAAGG
* *
33297045 TTTT-AAGTATATGG
1 TTTTGAA-TTTAAGG
33297059 TTTTGAATTTAAGG
1 TTTTGAATTTAAGG
33297073 TTT
1 TTT
33297076 AAGGGATAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 2 0.08
14 21 0.84
15 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (14 bp):
TTTTGAATTTAAGG
Found at i:33297088 original size:28 final size:28
Alignment explanation
Indices: 33297031--33297091 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
33297021 AAAATTGGGA
* *
33297031 TTTTGAATTTAAGGTTTTAAGTATATGG
1 TTTTGAATTTAAGGTTTTAAGGATAAGG
33297059 TTTTGAATTTAAGG-TTTAAGGGATAAGG
1 TTTTGAATTTAAGGTTTTAA-GGATAAGG
33297087 TTTTG
1 TTTTG
33297092 GGTTAAGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.48
Consensus pattern (28 bp):
TTTTGAATTTAAGGTTTTAAGGATAAGG
Found at i:33299455 original size:21 final size:22
Alignment explanation
Indices: 33299420--33299466 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 22
33299410 TTACTTACTT
33299420 AATTACTACTACTAACAAAATAA
1 AATTACTA-TACTAACAAAATAA
33299443 AATTACT-TACTAACAAAATAA
1 AATTACTATACTAACAAAATAA
33299464 AAT
1 AAT
33299467 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 17 0.71
23 7 0.29
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (22 bp):
AATTACTATACTAACAAAATAA
Found at i:33299467 original size:5 final size:5
Alignment explanation
Indices: 33299457--33299486 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
33299447 ACTTACTAAC
33299457 AAAAT AAAAT AAAAT AAAAT AAAATT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAA
33299487 ATAACCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:33299585 original size:30 final size:32
Alignment explanation
Indices: 33299550--33299614 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
33299540 AACATTAAAT
*
33299550 AACAAATCAA-TTAAAA-ATTAAAT-TAAACAA
1 AACAAAT-AACTTAAAATAATAAATATAAACAA
33299580 AACAAATAACTTAAAATAATAAATACTAAACAA
1 AACAAATAACTTAAAATAATAAATA-TAAACAA
33299613 AA
1 AA
33299615 TATAACTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 2 0.07
30 13 0.43
31 6 0.20
33 9 0.30
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.22
Consensus pattern (32 bp):
AACAAATAACTTAAAATAATAAATATAAACAA
Found at i:33299833 original size:4 final size:4
Alignment explanation
Indices: 33299824--33299859 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
33299814 CATTCTCTCC
*
33299824 TTCT TTCT TTCT TTCT TT-T TTTT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT T
33299860 ATCTAGTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (4 bp):
TTCT
Found at i:33300972 original size:20 final size:19
Alignment explanation
Indices: 33300949--33300990 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 19
33300939 ACATGAGTAA
33300949 TTTTATTTTGAATTTCAATTT
1 TTTTATTTT-AATTT-AATTT
33300970 TTTTATTTTAATTTAATTT
1 TTTTATTTTAATTTAATTT
33300989 TT
1 TT
33300991 AAAATAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTATTTTAATTTAATTT
Found at i:33309366 original size:23 final size:23
Alignment explanation
Indices: 33309342--33309624 Score: 352
Period size: 23 Copynumber: 12.3 Consensus size: 23
33309332 CTTATATCTA
*
33309342 TGCTTAAATATTAATATGATTTA
1 TGCTTAAATATTAATATGATTTG
* *
33309365 TGATTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATATGATTTG
** * *
33309388 TGCTTATGTATTAACATGATTTA
1 TGCTTAAATATTAATATGATTTG
33309411 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATATGATTTG
* * *
33309434 TGC-TCAATATCAATTTGATTTG
1 TGCTTAAATATTAATATGATTTG
33309456 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATATGATTTG
* *
33309479 TGCTCAAATATTAATATGATTTA
1 TGCTTAAATATTAATATGATTTG
* *
33309502 TGCTTAAATATTAATGTGATTTA
1 TGCTTAAATATTAATATGATTTG
* *
33309525 TGCTTAAATATTAAAATGGTTTG
1 TGCTTAAATATTAATATGATTTG
* *
33309548 TGCTCAAATATTAATGTGATTTG
1 TGCTTAAATATTAATATGATTTG
* * *
33309571 TGCTCAAATACTAATATGATTTA
1 TGCTTAAATATTAATATGATTTG
* *
33309594 TGATTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATATGATTTG
33309617 TGCTTAAA
1 TGCTTAAA
33309625 GAATTAAGAT
Statistics
Matches: 219, Mismatches: 40, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
22 19 0.09
23 200 0.91
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (23 bp):
TGCTTAAATATTAATATGATTTG
Found at i:33309744 original size:36 final size:35
Alignment explanation
Indices: 33309704--33309807 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 35
33309694 TGTGAAAGTG
33309704 AATATGTGAGTATGTTCTTCATGCCATGTGACAGAA
1 AATATGTG-GTATGTTCTTCATGCCATGTGACAGAA
* * *
33309740 AATATGTGGGTATGTTCTTCATGCTATGTGATAGAG
1 AATATGT-GGTATGTTCTTCATGCCATGTGACAGAA
*
33309776 AATATGTGGTTATGTTCTTCATGCCATCTGAC
1 AATATGTGG-TATGTTCTTCATGCCATGTGAC
33309808 TGATTATATT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
35 2 0.03
36 57 0.95
37 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (35 bp):
AATATGTGGTATGTTCTTCATGCCATGTGACAGAA
Found at i:33312874 original size:12 final size:12
Alignment explanation
Indices: 33312856--33312892 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33312846 GGTGCTTTTT
33312856 TTACTGTTTTGG
1 TTACTGTTTTGG
*
33312868 TTGCTGTTTT--
1 TTACTGTTTTGG
33312878 TTACTGTTTTGG
1 TTACTGTTTTGG
33312890 TTA
1 TTA
33312893 TTATTTTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 9 0.43
12 12 0.57
ACGTcount: A:0.08, C:0.08, G:0.22, T:0.62
Consensus pattern (12 bp):
TTACTGTTTTGG
Found at i:33312880 original size:22 final size:21
Alignment explanation
Indices: 33312840--33312891 Score: 88
Period size: 22 Copynumber: 2.5 Consensus size: 21
33312830 ATTATATTGT
33312840 TGTTTTGG-TGCTTTTTTTAC
1 TGTTTTGGTTGCTTTTTTTAC
33312860 TGTTTTGGTTGCTGTTTTTTAC
1 TGTTTTGGTTGCT-TTTTTTAC
33312882 TGTTTTGGTT
1 TGTTTTGGTT
33312892 ATTATTTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 8 0.27
21 4 0.13
22 18 0.60
ACGTcount: A:0.04, C:0.08, G:0.23, T:0.65
Consensus pattern (21 bp):
TGTTTTGGTTGCTTTTTTTAC
Found at i:33312899 original size:22 final size:22
Alignment explanation
Indices: 33312840--33312899 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
33312830 ATTATATTGT
*
33312840 TGTTTTGG-TGCT-TTTTTTAC
1 TGTTTTGGTTACTATTTTTTAC
* *
33312860 TGTTTTGGTTGCTGTTTTTTAC
1 TGTTTTGGTTACTATTTTTTAC
*
33312882 TGTTTTGGTTATTATTTT
1 TGTTTTGGTTACTATTTT
33312900 CGTGTTGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 8 0.23
21 4 0.11
22 23 0.66
ACGTcount: A:0.07, C:0.07, G:0.20, T:0.67
Consensus pattern (22 bp):
TGTTTTGGTTACTATTTTTTAC
Found at i:33312917 original size:12 final size:12
Alignment explanation
Indices: 33312902--33312984 Score: 59
Period size: 12 Copynumber: 7.3 Consensus size: 12
33312892 ATTATTTTCG
33312902 TGTTGTTTTTGT
1 TGTTGTTTTTGT
*
33312914 TG-T-TATTT-T
1 TGTTGTTTTTGT
**
33312923 TGTTGTTTTTAA
1 TGTTGTTTTTGT
*
33312935 TGTTG--TTTGC
1 TGTTGTTTTTGT
* *
33312945 TGTTATTTTTGC
1 TGTTGTTTTTGT
*
33312957 TGCTGTTTTTGT
1 TGTTGTTTTTGT
*
33312969 TGTTATTTTTGT
1 TGTTGTTTTTGT
33312981 TGTT
1 TGTT
33312985 TGGATATTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
9 3 0.05
10 12 0.22
11 5 0.09
12 35 0.64
ACGTcount: A:0.06, C:0.04, G:0.20, T:0.70
Consensus pattern (12 bp):
TGTTGTTTTTGT
Found at i:33312919 original size:23 final size:21
Alignment explanation
Indices: 33312882--33312932 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 21
33312872 TGTTTTTTAC
*
33312882 TGTTTTGGTTATTATTTTCGTGT
1 TGTTTTTGTTATTATTTT--TGT
*
33312905 TGTTTTTGTTGTTATTTTTGT
1 TGTTTTTGTTATTATTTTTGT
33312926 TGTTTTT
1 TGTTTTT
33312933 AATGTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 10 0.38
23 16 0.62
ACGTcount: A:0.06, C:0.02, G:0.20, T:0.73
Consensus pattern (21 bp):
TGTTTTTGTTATTATTTTTGT
Found at i:33312970 original size:31 final size:29
Alignment explanation
Indices: 33312904--33312972 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
33312894 TATTTTCGTG
* *
33312904 TTGTT-TTTGTTGTTATTTTTGTTGTTTT
1 TTGTTGTTTGCTGTTATTTTTGCTGTTTT
33312932 TAATGTTGTTTGCTGTTATTTTTGCTGCTGTTT
1 T--TGTTGTTTGCTGTTATTTTTGCTG-T-TTT
33312965 TTGTTGTT
1 TTGTTGTT
33312973 ATTTTTGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
28 1 0.03
30 4 0.12
31 24 0.71
32 1 0.03
33 4 0.12
ACGTcount: A:0.06, C:0.04, G:0.20, T:0.70
Consensus pattern (29 bp):
TTGTTGTTTGCTGTTATTTTTGCTGTTTT
Found at i:33324213 original size:91 final size:96
Alignment explanation
Indices: 33324109--33324327 Score: 259
Period size: 99 Copynumber: 2.3 Consensus size: 96
33324099 TTTGCATATT
* * * *
33324109 CTCGTCAGCTTAGTGTGAGCAACATCGT-GA-GGGAACA-AT-TATA-TGTACAGATACCGTATC
1 CTCGTCAGCTTAGTGTGAGCAGCATCGTAGACAGGAACACATATATACAGTACAGATACCATATC
*
33324169 GATGACTGAGGTACCGCATATGTTGCGAGTC
66 GATGACTGAGGTACCGCATATATTGCGAGTC
* * * *
33324200 CTCGTCAGCTTAGTGTGAGCAGCATCATATACTAGTAACAGTCATATGTACAGTACAGATACCAT
1 CTCGTCAGCTTAGTGTGAGCAGCATCGTAGAC-AGGAACA--CATATATACAGTACAGATACCAT
* *
33324265 ATCGATGGCTGAGGTACCGCATATATTGTGAGTC
63 ATCGATGACTGAGGTACCGCATATATTGCGAGTC
* *
33324299 TTCATCAGCTTAGTGTGAGCAGCATCGTA
1 CTCGTCAGCTTAGTGTGAGCAGCATCGTA
33324328 TACTGGCAAC
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
91 26 0.25
92 1 0.01
94 5 0.05
97 2 0.02
98 3 0.03
99 69 0.65
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (96 bp):
CTCGTCAGCTTAGTGTGAGCAGCATCGTAGACAGGAACACATATATACAGTACAGATACCATATC
GATGACTGAGGTACCGCATATATTGCGAGTC
Found at i:33324324 original size:99 final size:99
Alignment explanation
Indices: 33324153--33324331 Score: 295
Period size: 99 Copynumber: 1.8 Consensus size: 99
33324143 ACAATTATAT
* * *
33324153 GTACAGATACCGTATCGATGACTGAGGTACCGCATATGTTGCGAGTCCTCGTCAGCTTAGTGTGA
1 GTACAGATACCATATCGATGACTGAGGTACCGCATATATTGCGAGTCCTCATCAGCTTAGTGTGA
33324218 GCAGCATCATATACTAGTAACAGTCATATGTACA
66 GCAGCATCATATACTAGTAACAGTCATATGTACA
* * *
33324252 GTACAGATACCATATCGATGGCTGAGGTACCGCATATATTGTGAGTCTTCATCAGCTTAGTGTGA
1 GTACAGATACCATATCGATGACTGAGGTACCGCATATATTGCGAGTCCTCATCAGCTTAGTGTGA
*
33324317 GCAGCATCGTATACT
66 GCAGCATCATATACT
33324332 GGCAACAGAG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (99 bp):
GTACAGATACCATATCGATGACTGAGGTACCGCATATATTGCGAGTCCTCATCAGCTTAGTGTGA
GCAGCATCATATACTAGTAACAGTCATATGTACA
Found at i:33326538 original size:32 final size:32
Alignment explanation
Indices: 33326493--33326561 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
33326483 TTCAGTCGTC
*
33326493 AATTGAATAATGTAACCAAACTTTTTTCTTGT
1 AATTTAATAATGTAACCAAACTTTTTTCTTGT
33326525 AATTTAATAATGTAACCAAACTTTTTTCTTGT
1 AATTTAATAATGTAACCAAACTTTTTTCTTGT
33326557 AATTT
1 AATTT
33326562 TTATAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (32 bp):
AATTTAATAATGTAACCAAACTTTTTTCTTGT
Found at i:33329964 original size:20 final size:19
Alignment explanation
Indices: 33329913--33329956 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
33329903 TGAAAATTTT
*
33329913 ATTTTTATAATTATTTTGA
1 ATTTTTGTAATTATTTTGA
*
33329932 ATTTTTGAAAATTA-TTTGA
1 ATTTTTG-TAATTATTTTGA
33329951 ATTTTT
1 ATTTTT
33329957 TTGTAATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
ATTTTTGTAATTATTTTGA
Found at i:33335026 original size:16 final size:15
Alignment explanation
Indices: 33334963--33335027 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 15
33334953 ATTTAATTAG
*
33334963 TAAAAATATTAACAATT
1 TAAAAA-ATTAA-AAAT
33334980 TAAAATAAATTAAAAAGT
1 T-AAA-AAATTAAAAA-T
*
33334998 TAATAAATT-AAAAT
1 TAAAAAATTAAAAAT
33335012 TAAAAAATTAGAAAAT
1 TAAAAAATTA-AAAAT
33335028 GAAGTTTTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 9 0.22
15 4 0.10
16 10 0.25
17 5 0.12
18 10 0.25
19 2 0.05
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (15 bp):
TAAAAAATTAAAAAT
Found at i:33335595 original size:16 final size:16
Alignment explanation
Indices: 33335571--33335602 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33335561 AAATTAAATT
*
33335571 TCTACATTTTATTTTA
1 TCTAAATTTTATTTTA
33335587 TCTAAATTTTATTTTA
1 TCTAAATTTTATTTTA
33335603 ACTCAAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (16 bp):
TCTAAATTTTATTTTA
Found at i:33343642 original size:16 final size:17
Alignment explanation
Indices: 33343623--33343655 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33343613 ATTTTAACAC
*
33343623 AAATTAATTAT-TTTTT
1 AAATAAATTATATTTTT
33343639 AAATAAATTATATTTTT
1 AAATAAATTATATTTTT
33343656 CGACATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATAAATTATATTTTT
Found at i:33345325 original size:22 final size:21
Alignment explanation
Indices: 33345300--33345371 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
33345290 TGACATTCAA
33345300 TTGAATTTATTGAAAATATAGT
1 TTGAATTTA-TGAAAATATAGT
*
33345322 TTGAATTTATGATAAATTTCA-T
1 TTGAATTTATGA-AAATAT-AGT
*
33345344 TT--TTTTCATGAAAATATAGT
1 TTGAATTT-ATGAAAATATAGT
33345364 TTGAATTT
1 TTGAATTT
33345372 GATGGACATT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 1 0.03
20 11 0.28
21 7 0.17
22 20 0.50
23 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (21 bp):
TTGAATTTATGAAAATATAGT
Found at i:33354523 original size:3 final size:3
Alignment explanation
Indices: 33354515--33354546 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
33354505 ATGTCATACT
33354515 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
33354547 ATATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:33373948 original size:52 final size:52
Alignment explanation
Indices: 33373826--33374061 Score: 348
Period size: 52 Copynumber: 4.6 Consensus size: 52
33373816 TTCTCATTTG
* * *
33373826 ATACTCACGATGATACATCGTTATCGGACCTCATAATCCG-AAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
33373877 ATGCTCATGATAACACATAGTCATCGGACCTCATAATCCGTAAATGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
33373929 ATACTCACGATGACACATAGTCACCGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
33373981 ATACCCACGATGACACATAGTCATCGGACCTCTTAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
33374033 ATACTCACAATGACACATAGTCATCGGAC
1 ATACTCACGATGACACATAGTCATCGGAC
33374062 TTTTTGCATT
Statistics
Matches: 164, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
51 34 0.21
52 130 0.79
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:33374635 original size:18 final size:16
Alignment explanation
Indices: 33374604--33374639 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
33374594 CCTCAATACC
33374604 ATTTCATTTCAATTTA
1 ATTTCATTTCAATTTA
33374620 ATTTCATTCCTCAATTTA
1 ATTTCATT--TCAATTTA
33374638 AT
1 AT
33374640 ATTTACTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTCATTTCAATTTA
Found at i:33377776 original size:3 final size:3
Alignment explanation
Indices: 33377762--33377792 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
33377752 AATGCACCAC
*
33377762 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
33377793 CCAAAGCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:33388769 original size:36 final size:36
Alignment explanation
Indices: 33388729--33388817 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 36
33388719 TATTAGCACA
* *
33388729 ACATAATCACTATCACATGACATGAAAAATATACCC
1 ACATATTCACTATCACATGACATGAAAAACATACCC
* * * *
33388765 ACATATTTACTGTCACATGACATTAATAACATACCC
1 ACATATTCACTATCACATGACATGAAAAACATACCC
* *
33388801 TCATATTCACTTTCACA
1 ACATATTCACTATCACA
33388818 ACAGTCATCA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.29
Consensus pattern (36 bp):
ACATATTCACTATCACATGACATGAAAAACATACCC
Found at i:33389712 original size:28 final size:28
Alignment explanation
Indices: 33389662--33389717 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
33389652 GCTTTGATGC
* *
33389662 TAATCTGGAAAAACTTAAATTTTGGAGA
1 TAATCTGGAAAAACTCAAATTTTAGAGA
**
33389690 TAATCTGGAAAAACTCACGTTTTAGAGA
1 TAATCTGGAAAAACTCAAATTTTAGAGA
33389718 CGATGATGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (28 bp):
TAATCTGGAAAAACTCAAATTTTAGAGA
Found at i:33398231 original size:37 final size:38
Alignment explanation
Indices: 33398134--33398216 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
33398124 ATTTCCGAAA
* * *
33398134 TGCACCCAAGACTTTCACTGCATAAATATTCTTTAAAT
1 TGCACCCAAAACTATCGCTGCATAAATATTCTTTAAAT
* * *
33398172 TGCATCCAAAACTATCGCTGCATAAGTATTC-TTCAAT
1 TGCACCCAAAACTATCGCTGCATAAATATTCTTTAAAT
33398209 TGCACCCA
1 TGCACCCA
33398217 GGAATGTCGC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 12 0.32
38 26 0.68
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.31
Consensus pattern (38 bp):
TGCACCCAAAACTATCGCTGCATAAATATTCTTTAAAT
Found at i:33410020 original size:21 final size:21
Alignment explanation
Indices: 33409990--33410034 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
33409980 TTTTTAGTAA
* *
33409990 CGGTAGAAG-TATGACTTATTT
1 CGGTAAAAGTTAT-ACTTATAT
33410011 CGGTAAAAGTTATACTTATAT
1 CGGTAAAAGTTATACTTATAT
33410032 CGG
1 CGG
33410035 CTGAACTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (21 bp):
CGGTAAAAGTTATACTTATAT
Found at i:33417166 original size:21 final size:21
Alignment explanation
Indices: 33417125--33417176 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
33417115 GGAGTTTTTA
33417125 GTATCGGTAGAAGCATGACTT
1 GTATCGGTAGAAGCATGACTT
*
33417146 GT-TCCGGTAGAAGTTAT-ACTT
1 GTAT-CGGTAGAAG-CATGACTT
33417167 GTATCGGTAG
1 GTATCGGTAG
33417177 TAGAACTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 23 0.85
22 3 0.11
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGCATGACTT
Found at i:33424412 original size:12 final size:12
Alignment explanation
Indices: 33424397--33424429 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
33424387 CTTCAATTTA
33424397 TCTATTAATTCC
1 TCTATTAATTCC
*
33424409 TCTATCAATTCC
1 TCTATTAATTCC
33424421 TCTATTAAT
1 TCTATTAAT
33424430 GCTGATGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.27, C:0.24, G:0.00, T:0.48
Consensus pattern (12 bp):
TCTATTAATTCC
Found at i:33425371 original size:24 final size:24
Alignment explanation
Indices: 33425339--33425390 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
33425329 ACAAGGAGAA
33425339 ATCCTAAGGATATTATGAGCTTTG
1 ATCCTAAGGATATTATGAGCTTTG
*
33425363 ATCCTAAGGATATTGTGAGCTTTG
1 ATCCTAAGGATATTATGAGCTTTG
33425387 ATCC
1 ATCC
33425391 AGAACTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (24 bp):
ATCCTAAGGATATTATGAGCTTTG
Found at i:33433285 original size:20 final size:21
Alignment explanation
Indices: 33433248--33433303 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
33433238 ATCATTAAGC
*
33433248 CTTAATT-AATCATTTTTA-A
1 CTTAATTAAATCATATTTACA
33433267 TCTTAATTAAATC-TATTTACA
1 -CTTAATTAAATCATATTTACA
*
33433288 CTTAATATAAACCATA
1 CTTAAT-TAAATCATA
33433304 CCAATCCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 18 0.60
21 10 0.33
22 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (21 bp):
CTTAATTAAATCATATTTACA
Found at i:33438848 original size:20 final size:20
Alignment explanation
Indices: 33438811--33438849 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
33438801 ATCATTAAGC
*
33438811 CTTAATTAATCATTTTTAAT
1 CTTAATTAATCATATTTAAT
33438831 CTTAATTAAATC-TATTTAA
1 CTTAATT-AATCATATTTAA
33438850 ACATAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (20 bp):
CTTAATTAATCATATTTAAT
Found at i:33450053 original size:21 final size:21
Alignment explanation
Indices: 33450027--33450078 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 21
33450017 AGTTAGTTAC
33450027 TTGCATTTTATTTAGTTGTCA
1 TTGCATTTTATTTAGTTGTCA
*
33450048 TTGCA--TT-TTTATTTGTCA
1 TTGCATTTTATTTAGTTGTCA
*
33450066 CTGCATTTTATTT
1 TTGCATTTTATTT
33450079 GTTATTGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 14 0.54
19 2 0.08
20 2 0.08
21 8 0.31
ACGTcount: A:0.17, C:0.12, G:0.12, T:0.60
Consensus pattern (21 bp):
TTGCATTTTATTTAGTTGTCA
Found at i:33450063 original size:18 final size:18
Alignment explanation
Indices: 33450037--33450090 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
33450027 TTGCATTTTA
*
33450037 TTTAGTTGTCATTGCATT
1 TTTATTTGTCATTGCATT
*
33450055 TTTATTTGTCACTGCA-T
1 TTTATTTGTCATTGCATT
*
33450072 TTTATTTGTTATTGCATT
1 TTTATTTGTCATTGCATT
33450090 T
1 T
33450091 GCATTGTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 15 0.48
18 16 0.52
ACGTcount: A:0.17, C:0.11, G:0.13, T:0.59
Consensus pattern (18 bp):
TTTATTTGTCATTGCATT
Found at i:33450076 original size:17 final size:17
Alignment explanation
Indices: 33450037--33450090 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
33450027 TTGCATTTTA
*
33450037 TTTAGTTGTCATTGCATT
1 TTTATTTGTCATTGCA-T
*
33450055 TTTATTTGTCACTGCAT
1 TTTATTTGTCATTGCAT
*
33450072 TTTATTTGTTATTGCAT
1 TTTATTTGTCATTGCAT
33450089 TT
1 TT
33450091 GCATTGTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 18 0.56
18 14 0.44
ACGTcount: A:0.17, C:0.11, G:0.13, T:0.59
Consensus pattern (17 bp):
TTTATTTGTCATTGCAT
Found at i:33460952 original size:19 final size:19
Alignment explanation
Indices: 33460928--33460969 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
33460918 GTACACTGTC
33460928 GATGCAAGTAGAATAGATA
1 GATGCAAGTAGAATAGATA
33460947 GATGCAAGTAGAATAGATA
1 GATGCAAGTAGAATAGATA
33460966 GATG
1 GATG
33460970 AAAATCTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (19 bp):
GATGCAAGTAGAATAGATA
Found at i:33469303 original size:36 final size:36
Alignment explanation
Indices: 33469263--33469331 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
33469253 GATTAGCACA
*
33469263 ACATAATCACTGCCACATGGCATTAAAAACATATCC
1 ACATAATCACTGCCACATGGCATGAAAAACATATCC
* * * * *
33469299 ACATATTTATTGTCACATGGCATGAATAACATA
1 ACATAATCACTGCCACATGGCATGAAAAACATA
33469332 CTTTCATAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.28
Consensus pattern (36 bp):
ACATAATCACTGCCACATGGCATGAAAAACATATCC
Found at i:33469404 original size:7 final size:8
Alignment explanation
Indices: 33469386--33469415 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
33469376 CTCATATATG
33469386 TTCACAAT
1 TTCACAAT
33469394 TTCAC-AT
1 TTCACAAT
33469401 TTCACAAT
1 TTCACAAT
33469409 TTCACAA
1 TTCACAA
33469416 GCAAACATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (8 bp):
TTCACAAT
Found at i:33469406 original size:15 final size:15
Alignment explanation
Indices: 33469386--33469414 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33469376 CTCATATATG
33469386 TTCACAATTTCACAT
1 TTCACAATTTCACAT
33469401 TTCACAATTTCACA
1 TTCACAATTTCACA
33469415 AGCAAACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (15 bp):
TTCACAATTTCACAT
Found at i:33477943 original size:52 final size:52
Alignment explanation
Indices: 33477860--33478306 Score: 714
Period size: 52 Copynumber: 8.6 Consensus size: 52
33477850 TAAATGCAAA
* * *
33477860 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAACCCTTTATGGATTAAG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
33477912 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATA
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * * *
33477964 AGGTCCAATGACTATGTGTCATTGTGAGTATATGAATCTTTTACGAATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
33478016 AGATCCGATGACTATGTGTCATCGTAAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
*
33478068 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * * *
33478120 AGGACCGATGACTATGTTTCATCGTGAGTATATGAAACCTTTATGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
33478172 AGGTCCGATGACTATGTGTCATTGTGAGTATATGAATCCTTTACGGATTATA
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
33478224 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTTTACAGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
33478276 AGGTCCGATGACTATGTGTCATCGTGAGTAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTAT
33478307 CAAATGAGAA
Statistics
Matches: 360, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 360 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:33481425 original size:7 final size:6
Alignment explanation
Indices: 33481398--33481444 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
33481388 CGACTCTATA
33481398 AAAATG AAAATG AAAATG AAAATCG -AAAT- AGAAATG AAAATGG AAAA
1 AAAATG AAAATG AAAATG AAAAT-G AAAATG A-AAATG AAAAT-G AAAA
33481445 ATTTTCAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
6 29 0.81
7 7 0.19
ACGTcount: A:0.66, C:0.02, G:0.17, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:33483327 original size:26 final size:26
Alignment explanation
Indices: 33483267--33483320 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
33483257 ATTTTGGGCG
*
33483267 CAATTCTGGACACGTTCATGTAGCGA
1 CAATTCTGGACACGTTCATGCAGCGA
* *
33483293 CAATTCTGGACATGTTCATGCAGTGA
1 CAATTCTGGACACGTTCATGCAGCGA
33483319 CA
1 CA
33483321 TTCCTGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
CAATTCTGGACACGTTCATGCAGCGA
Found at i:33483352 original size:37 final size:38
Alignment explanation
Indices: 33483310--33483393 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 38
33483300 GGACATGTTC
* *
33483310 ATGCAGTGACA-TTCCTGGGTGCAA-TTCAAGAATATTT
1 ATGCAGCGACAGTT-CTGGATGCAATTTCAAGAATATTT
* *
33483347 ATGCAGCGATAGTTCTGGATGCAATTTGAAGAATATTT
1 ATGCAGCGACAGTTCTGGATGCAATTTCAAGAATATTT
33483385 ATGCAGCGA
1 ATGCAGCGA
33483394 TAATCTTAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
37 18 0.44
38 23 0.56
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (38 bp):
ATGCAGCGACAGTTCTGGATGCAATTTCAAGAATATTT
Found at i:33483387 original size:38 final size:37
Alignment explanation
Indices: 33483324--33483395 Score: 117
Period size: 38 Copynumber: 1.9 Consensus size: 37
33483314 AGTGACATTC
*
33483324 CTGGGTGCAATTCAAGAATATTTATGCAGCGATAGTT
1 CTGGATGCAATTCAAGAATATTTATGCAGCGATAGTT
*
33483361 CTGGATGCAATTTGAAGAATATTTATGCAGCGATA
1 CTGGATGCAA-TTCAAGAATATTTATGCAGCGATA
33483396 ATCTTAGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 9 0.28
38 23 0.72
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (37 bp):
CTGGATGCAATTCAAGAATATTTATGCAGCGATAGTT
Found at i:33484710 original size:17 final size:17
Alignment explanation
Indices: 33484688--33484720 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33484678 TAGCGATAAT
*
33484688 AAAATGCAGTGACAATA
1 AAAATGCAGGGACAATA
33484705 AAAATGCAGGGACAAT
1 AAAATGCAGGGACAAT
33484721 TATACTACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.21, T:0.15
Consensus pattern (17 bp):
AAAATGCAGGGACAATA
Found at i:33488165 original size:37 final size:37
Alignment explanation
Indices: 33488097--33488193 Score: 126
Period size: 37 Copynumber: 2.6 Consensus size: 37
33488087 GAAATATTCC
* * *
33488097 TGCGACGACA-GTTTTGGTGCAATCTAGAAGTGCTCA
1 TGCGGCGACATGTTTGGGCGCAATCTAGAAGTGCTCA
*
33488133 TGCGGCGATA-GTATTGGGCGCAATCTAGAAGTGCTCA
1 TGCGGCGACATGT-TTGGGCGCAATCTAGAAGTGCTCA
*
33488170 TGCGGTGACATGTTTGGGCGCAAT
1 TGCGGCGACATGTTTGGGCGCAAT
33488194 TCTGGATTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
36 10 0.19
37 41 0.77
38 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TGCGGCGACATGTTTGGGCGCAATCTAGAAGTGCTCA
Found at i:33491677 original size:54 final size:54
Alignment explanation
Indices: 33491561--33491679 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
33491551 GGATGTCTCT
** * * *
33491561 CCCGTGTCAAAGACCGTGTAACTCACTGACTTGAGACACACGGCCGTGTCCTAG
1 CCCGTGTCTTAGACCATGTAACTCACTGACTTGAGACACACGGCCGTGTCCCAA
* *
33491615 CCCGTGTCTTAGACCATGTAACTCACTGACTTGGGACACATGGCCGTGTCCCAA
1 CCCGTGTCTTAGACCATGTAACTCACTGACTTGAGACACACGGCCGTGTCCCAA
33491669 CCCGTGTCTTA
1 CCCGTGTCTTA
33491680 AATCATGTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (54 bp):
CCCGTGTCTTAGACCATGTAACTCACTGACTTGAGACACACGGCCGTGTCCCAA
Found at i:33492588 original size:20 final size:19
Alignment explanation
Indices: 33492564--33492612 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
33492554 GGGGCATGAG
33492564 TGTGCATTCAGGGGCACCAAA
1 TGTGCATTCA-GGGCA-CAAA
**
33492585 -GTGCAAACAGGGCACAAA
1 TGTGCATTCAGGGCACAAA
33492603 TGTGCATTCA
1 TGTGCATTCA
33492613 AGAGCACTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 7 0.30
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (19 bp):
TGTGCATTCAGGGCACAAA
Found at i:33495001 original size:44 final size:42
Alignment explanation
Indices: 33494936--33495025 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 42
33494926 TATATTATTG
* *
33494936 TTTTGGTGCTGTTTTTCTTACTGTTTTGGTTGCTATTTTTGCTA
1 TTTTGGTGCTGTTTTTCTTACTATTTTGG-TG-TATTTTTACTA
* * * *
33494980 TTTTGGTGTTTTTTTTTTTACTATTTTGGTGTTTTTTTACTA
1 TTTTGGTGCTGTTTTTCTTACTATTTTGGTGTATTTTTACTA
33495022 TTTT
1 TTTT
33495026 AGTTACTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 13 0.32
43 2 0.05
44 25 0.62
ACGTcount: A:0.08, C:0.08, G:0.17, T:0.68
Consensus pattern (42 bp):
TTTTGGTGCTGTTTTTCTTACTATTTTGGTGTATTTTTACTA
Found at i:33495003 original size:23 final size:23
Alignment explanation
Indices: 33494971--33495017 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
33494961 TTGGTTGCTA
*
33494971 TTTTTGCTATTTTGGTGTTTTTT
1 TTTTTACTATTTTGGTGTTTTTT
33494994 TTTTTACTATTTTGGTGTTTTTT
1 TTTTTACTATTTTGGTGTTTTTT
33495017 T
1 T
33495018 ACTATTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.06, C:0.04, G:0.15, T:0.74
Consensus pattern (23 bp):
TTTTTACTATTTTGGTGTTTTTT
Found at i:33495037 original size:20 final size:19
Alignment explanation
Indices: 33494992--33495028 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
33494982 TTGGTGTTTT
*
33494992 TTTTTTTACTATTTTGGTG
1 TTTTTTTACTATTTTAGTG
33495011 TTTTTTTACTATTTTAGT
1 TTTTTTTACTATTTTAGT
33495029 TACTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.05, G:0.11, T:0.70
Consensus pattern (19 bp):
TTTTTTTACTATTTTAGTG
Found at i:33495085 original size:12 final size:12
Alignment explanation
Indices: 33495064--33495116 Score: 88
Period size: 12 Copynumber: 4.4 Consensus size: 12
33495054 GATGCTGTTG
*
33495064 TTTTTGTTGCTA
1 TTTTTATTGCTA
33495076 TTTTTATTGCTA
1 TTTTTATTGCTA
*
33495088 TTTTTGTTGCTA
1 TTTTTATTGCTA
33495100 TTTTTATTGCTA
1 TTTTTATTGCTA
33495112 TTTTT
1 TTTTT
33495117 GTTGTTTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.11, C:0.08, G:0.11, T:0.70
Consensus pattern (12 bp):
TTTTTATTGCTA
Found at i:33495091 original size:24 final size:24
Alignment explanation
Indices: 33495064--33495120 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
33495054 GATGCTGTTG
33495064 TTTTTGTTGCTATTTTTATTGCTA
1 TTTTTGTTGCTATTTTTATTGCTA
33495088 TTTTTGTTGCTATTTTTATTGCTA
1 TTTTTGTTGCTATTTTTATTGCTA
33495112 TTTTTGTTG
1 TTTTTGTTG
33495121 TTTTGCTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.11, C:0.07, G:0.14, T:0.68
Consensus pattern (24 bp):
TTTTTGTTGCTATTTTTATTGCTA
Found at i:33495133 original size:20 final size:20
Alignment explanation
Indices: 33495110--33495180 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 20
33495100 TTTTTATTGC
*
33495110 TATTTTTGTTGTTTTGCTGT
1 TATTTTTGTTGTTTTGATGT
*
33495130 TATTTTTACTGCTGTTTTGATTGT
1 TA-TTTT--TGTTGTTTTGA-TGT
* *
33495154 TATTTTGGTTGTTTGGATGT
1 TATTTTTGTTGTTTTGATGT
33495174 TATTTTT
1 TATTTTT
33495181 ATGTGTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
20 11 0.27
21 12 0.29
23 13 0.32
24 5 0.12
ACGTcount: A:0.10, C:0.04, G:0.20, T:0.66
Consensus pattern (20 bp):
TATTTTTGTTGTTTTGATGT
Found at i:33495136 original size:21 final size:22
Alignment explanation
Indices: 33495112--33495189 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 22
33495102 TTTATTGCTA
*
33495112 TTTT-TGTTGTTTTGCTGTTAT
1 TTTTATGTTGTTTTGATGTTAT
*
33495133 TTTTACTGCTGTTTTGATTGTTA-
1 TTTTA-TGTTGTTTTGA-TGTTAT
* *
33495156 TTTT-GGTTGTTTGGATGTTAT
1 TTTTATGTTGTTTTGATGTTAT
33495177 TTTTATG-TGTTTT
1 TTTTATGTTGTTTT
33495190 TACTATTGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 5 0.11
21 21 0.47
22 1 0.02
23 13 0.29
24 5 0.11
ACGTcount: A:0.09, C:0.04, G:0.21, T:0.67
Consensus pattern (22 bp):
TTTTATGTTGTTTTGATGTTAT
Found at i:33495136 original size:44 final size:44
Alignment explanation
Indices: 33495086--33495181 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
33495076 TTTTTATTGC
** * * * *
33495086 TATTTTTGTTGCTATTTTTATTGCTATTTTTGTTGTTTTGCTGT
1 TATTTTTACTGCTATTTTGATTGCTATTTTGGTTGTTTGGATGT
* *
33495130 TATTTTTACTGCTGTTTTGATTGTTATTTTGGTTGTTTGGATGT
1 TATTTTTACTGCTATTTTGATTGCTATTTTGGTTGTTTGGATGT
33495174 TATTTTTA
1 TATTTTTA
33495182 TGTGTTTTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.11, C:0.05, G:0.18, T:0.66
Consensus pattern (44 bp):
TATTTTTACTGCTATTTTGATTGCTATTTTGGTTGTTTGGATGT
Found at i:33495154 original size:32 final size:32
Alignment explanation
Indices: 33495089--33495154 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
33495079 TTATTGCTAT
* * *
33495089 TTTTGTTGCTATTTTTATTGCTATTTTTGTTG
1 TTTTGCTGCTATTTTTACTGCTAGTTTTGTTG
*
33495121 TTTTGCTGTTATTTTTACTGCT-GTTTTGATTG
1 TTTTGCTGCTATTTTTACTGCTAGTTTTG-TTG
33495153 TT
1 TT
33495155 ATTTTGGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 5 0.17
32 24 0.83
ACGTcount: A:0.09, C:0.08, G:0.17, T:0.67
Consensus pattern (32 bp):
TTTTGCTGCTATTTTTACTGCTAGTTTTGTTG
Found at i:33496721 original size:15 final size:15
Alignment explanation
Indices: 33496703--33496737 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
33496693 GGATTATAGT
33496703 TACGAGGATAACATC
1 TACGAGGATAACATC
* *
33496718 TACGAGGATGATATC
1 TACGAGGATAACATC
33496733 TACGA
1 TACGA
33496738 AGATGGATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (15 bp):
TACGAGGATAACATC
Found at i:33496742 original size:15 final size:16
Alignment explanation
Indices: 33496715--33496756 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
33496705 CGAGGATAAC
*
33496715 ATCTACGAGGAT-GAT
1 ATCTACGAAGATGGAT
33496730 ATCTACGAAGATGGAT
1 ATCTACGAAGATGGAT
*
33496746 A-CTATGAAGAT
1 ATCTACGAAGAT
33496757 TGGGGGATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (16 bp):
ATCTACGAAGATGGAT
Found at i:33501888 original size:129 final size:129
Alignment explanation
Indices: 33501745--33502005 Score: 522
Period size: 129 Copynumber: 2.0 Consensus size: 129
33501735 ACTTTGTTAT
33501745 TTTCATTTTAGAAATGAGATTGTAACTTTCGCATAAACGTTCGAGGAATTATTTCTCGAAAGATT
1 TTTCATTTTAGAAATGAGATTGTAACTTTCGCATAAACGTTCGAGGAATTATTTCTCGAAAGATT
33501810 GCCAATAAAATTAAAGTTTCTTCTTCATTTCATTTCTTCAATTCTATGTTTTTACATGTTATTG
66 GCCAATAAAATTAAAGTTTCTTCTTCATTTCATTTCTTCAATTCTATGTTTTTACATGTTATTG
33501874 TTTCATTTTAGAAATGAGATTGTAACTTTCGCATAAACGTTCGAGGAATTATTTCTCGAAAGATT
1 TTTCATTTTAGAAATGAGATTGTAACTTTCGCATAAACGTTCGAGGAATTATTTCTCGAAAGATT
33501939 GCCAATAAAATTAAAGTTTCTTCTTCATTTCATTTCTTCAATTCTATGTTTTTACATGTTATTG
66 GCCAATAAAATTAAAGTTTCTTCTTCATTTCATTTCTTCAATTCTATGTTTTTACATGTTATTG
33502003 TTT
1 TTT
33502006 TTATGATGAT
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 132 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (129 bp):
TTTCATTTTAGAAATGAGATTGTAACTTTCGCATAAACGTTCGAGGAATTATTTCTCGAAAGATT
GCCAATAAAATTAAAGTTTCTTCTTCATTTCATTTCTTCAATTCTATGTTTTTACATGTTATTG
Found at i:33502454 original size:26 final size:26
Alignment explanation
Indices: 33502425--33502480 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
33502415 AGCACAAACG
*
33502425 AAAATAACTAAAAACATGAAACAATA
1 AAAATAACTAAAAACACGAAACAATA
* *
33502451 AAAATAACTAAAAACACGAAAGAATG
1 AAAATAACTAAAAACACGAAACAATA
33502477 AAAA
1 AAAA
33502481 GCTTAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.12
Consensus pattern (26 bp):
AAAATAACTAAAAACACGAAACAATA
Found at i:33512788 original size:25 final size:25
Alignment explanation
Indices: 33512753--33512812 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
33512743 AAAAAGTATC
33512753 AAATTCAAATATCAAATTAGATAAAA
1 AAATTCAAATATCAAATTAGA-AAAA
33512779 AAATT-AAATATCAAATTAG-AAAA
1 AAATTCAAATATCAAATTAGAAAAA
33512802 AAATATCAAAT
1 AAAT-TCAAAT
33512813 TTATATGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 8 0.25
24 1 0.03
25 18 0.56
26 5 0.16
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (25 bp):
AAATTCAAATATCAAATTAGAAAAA
Found at i:33531155 original size:116 final size:114
Alignment explanation
Indices: 33530952--33531182 Score: 435
Period size: 116 Copynumber: 2.0 Consensus size: 114
33530942 TTGAGGATAA
*
33530952 ATTCTTTCTACGGGAGGGGTAATGTTGTGGAAGCTTTTATAGGCCACACATATGAGAGGAAAAAG
1 ATTCTTTCTACGGGAGGGGTAATGTTGTGGAAGATTTTATAGGCCACACATATGAGAGGAAAAAG
33531017 GCGTTAGTTTAAGTTTTTAAAGTGAAATTATTTCATTTTTATTTTACATT
66 GCGTTAGTTTAAGTTTTTAAAGTGAAATTATTTCA-TTTTATTTTACATT
33531067 ATTCTTTCTACGGGAGGGGGTAATGTTGTGGAAGATTTTATAGGCCACACATATGAGAGGAAAAA
1 ATTCTTTCTACGGGA-GGGGTAATGTTGTGGAAGATTTTATAGGCCACACATATGAGAGGAAAAA
33531132 GGCGTTAGTTTAAGTTTTTAAAGTGAAATTATTTCATTTTATTTTACATT
65 GGCGTTAGTTTAAGTTTTTAAAGTGAAATTATTTCATTTTATTTTACATT
33531182 A
1 A
33531183 CTTTTACTTT
Statistics
Matches: 114, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
115 30 0.26
116 84 0.74
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (114 bp):
ATTCTTTCTACGGGAGGGGTAATGTTGTGGAAGATTTTATAGGCCACACATATGAGAGGAAAAAG
GCGTTAGTTTAAGTTTTTAAAGTGAAATTATTTCATTTTATTTTACATT
Found at i:33536895 original size:14 final size:13
Alignment explanation
Indices: 33536876--33536915 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
33536866 ATAATTATTT
33536876 ATTTATTTTTATC
1 ATTTATTTTTATC
*
33536889 ATATTATTTATTTTC
1 AT-TTATTT-TTATC
33536904 ATTTATTTTTAT
1 ATTTATTTTTAT
33536916 TTACTGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTATTTTTATC
Found at i:33536926 original size:39 final size:38
Alignment explanation
Indices: 33536873--33536949 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 38
33536863 TTAATAATTA
*
33536873 TTTATTTATTTTTATCATATT-ATTTATTTTCATTTATT
1 TTTATTTATGTTTATCATATTGATTTATTTT-ATTTATT
* * *
33536911 TTTATTTACTGTTTATTATGTTGTTTTATTTTATTTATT
1 TTTATTTA-TGTTTATCATATTGATTTATTTTATTTATT
33536950 GTTGTTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 8 0.24
39 17 0.52
40 8 0.24
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (38 bp):
TTTATTTATGTTTATCATATTGATTTATTTTATTTATT
Found at i:33536938 original size:20 final size:20
Alignment explanation
Indices: 33536895--33536955 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
33536885 TATCATATTA
33536895 TTTATTTTCATTTATT-TT-T
1 TTTATTTT-ATTTATTGTTGT
33536914 ATTTACTGTTTA-TTA-TGTTGT
1 -TTTA-T-TTTATTTATTGTTGT
33536935 TTTATTTTATTTATTGTTGT
1 TTTATTTTATTTATTGTTGT
33536955 T
1 T
33536956 GTTGTTATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 20 0.57
21 3 0.09
22 3 0.09
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.72
Consensus pattern (20 bp):
TTTATTTTATTTATTGTTGT
Found at i:33536975 original size:3 final size:3
Alignment explanation
Indices: 33536969--33537052 Score: 93
Period size: 3 Copynumber: 28.3 Consensus size: 3
33536959 GTTATTGTTG
*
33536969 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TCAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* * *
33537015 T-T TAT T-T TCT CAT CAT TAT T-T CTAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
33537053 TATTTACTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
2 5 0.07
3 63 0.88
4 4 0.06
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:33537073 original size:16 final size:16
Alignment explanation
Indices: 33537054--33537091 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33537044 ATTATTATTT
33537054 ATTTACTTTT-ATTTTC
1 ATTTA-TTTTCATTTTC
*
33537070 ATTTATTTTCATTTTT
1 ATTTATTTTCATTTTC
33537086 ATTTAT
1 ATTTAT
33537092 AGTTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTATTTTCATTTTC
Found at i:33537106 original size:9 final size:9
Alignment explanation
Indices: 33536869--33537106 Score: 51
Period size: 9 Copynumber: 25.2 Consensus size: 9
33536859 GTTTTTAATA
*
33536869 ATTATTTAT
1 ATTATTTTT
33536878 -TTATTTTT
1 ATTATTTTT
* *
33536886 ATCA-TATT
1 ATTATTTTT
*
33536894 ATTTATTTTC
1 A-TTATTTTT
33536904 ATTTATTTTT
1 A-TTATTTTT
*
33536914 ATTTACTGTTT
1 A-TTA-TTTTT
33536925 ATTATGTTGTT
1 ATTAT-TT-TT
33536936 -TTA-TTTT
1 ATTATTTTT
*
33536943 ATTTATTGTT
1 A-TTATTTTT
* * *
33536953 GTTGTTGTT
1 ATTATTTTT
* *
33536962 ATT-GTTGT
1 ATTATTTTT
*
33536970 ATTATTATT
1 ATTATTTTT
*
33536979 ATTATTATT
1 ATTATTTTT
*
33536988 ATTATTATT
1 ATTATTTTT
*
33536997 ATTATTATT
1 ATTATTTTT
*
33537006 ATTCATTGTT
1 ATT-ATTTTT
33537016 -TTATTTTCT
1 ATTATTTT-T
*
33537025 CATCATTATTT
1 -ATTATT-TTT
* *
33537036 -CTATTATT
1 ATTATTTTT
33537044 ATTATTATTT
1 ATTATT-TTT
*
33537054 ATTTACTTTT
1 A-TTATTTTT
33537064 ATT-TTCATTT
1 ATTATT--TTT
33537074 ATTTTCATTTTT
1 A--TT-ATTTTT
**
33537086 ATTTATAGTT
1 A-TTATTTTT
33537096 ATTATTTTT
1 ATTATTTTT
33537105 AT
1 AT
33537107 CATTATTGTA
Statistics
Matches: 172, Mismatches: 33, Indels: 48
0.68 0.13 0.19
Matches are distributed among these distances:
7 2 0.01
8 25 0.15
9 69 0.40
10 47 0.27
11 19 0.11
12 8 0.05
14 2 0.01
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (9 bp):
ATTATTTTT
Found at i:33539345 original size:11 final size:10
Alignment explanation
Indices: 33539322--33539377 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 10
33539312 ATTTTATTCT
*
33539322 AAAAAAAG-C
1 AAAAAAAGAA
*
33539331 AAAAAAGGAA
1 AAAAAAAGAA
*
33539341 AAAAATATGAA
1 AAAAA-AAGAA
33539352 AAAAATAAGAA
1 AAAAA-AAGAA
*
33539363 AAGAAAAGAA
1 AAAAAAAGAA
33539373 AAAAA
1 AAAAA
33539378 TGTGTTTGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
9 7 0.18
10 14 0.36
11 18 0.46
ACGTcount: A:0.80, C:0.02, G:0.12, T:0.05
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:33542136 original size:26 final size:26
Alignment explanation
Indices: 33542101--33542228 Score: 136
Period size: 26 Copynumber: 5.0 Consensus size: 26
33542091 AGAGCGTAAC
*
33542101 TCTGTCTGGGCTCGAATGAGCTAAAT
1 TCTGTTTGGGCTCGAATGAGCTAAAT
* *
33542127 TTTGTTTGGGCTCAAATGAGCTAAAT
1 TCTGTTTGGGCTCGAATGAGCTAAAT
33542153 T-T-TATTGGGCTCGAATGAGCTAAAT
1 TCTGT-TTGGGCTCGAATGAGCTAAAT
* * *
33542178 TCTATTTGGGCTCCTAA-AAGCTAAAT
1 TCTGTTTGGGCT-CGAATGAGCTAAAT
* * *
33542204 TCTGTCTGGGCTTGTATGAGCTAAA
1 TCTGTTTGGGCTCGAATGAGCTAAA
33542229 ATTTCTGGAA
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
24 1 0.01
25 23 0.27
26 57 0.67
27 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTGTTTGGGCTCGAATGAGCTAAAT
Found at i:33542200 original size:51 final size:51
Alignment explanation
Indices: 33542105--33542228 Score: 153
Period size: 51 Copynumber: 2.4 Consensus size: 51
33542095 CGTAACTCTG
* * *
33542105 TCTGGGCTCGAATGAGCTAAATTTTGTTTGGGCTCAAATGAGCTAAATTTTA
1 TCTGGGCTCGAATGAGCTAAATTCTATTTGGGCTCAAA-GAGCTAAATTCTA
*
33542157 T-TGGGCTCGAATGAGCTAAATTCTATTTGGGCTCCTAAA-AGCTAAATTCTG
1 TCTGGGCTCGAATGAGCTAAATTCTATTTGGGCT-C-AAAGAGCTAAATTCTA
* *
33542208 TCTGGGCTTGTATGAGCTAAA
1 TCTGGGCTCGAATGAGCTAAA
33542229 ATTTCTGGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
51 41 0.65
52 19 0.30
53 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (51 bp):
TCTGGGCTCGAATGAGCTAAATTCTATTTGGGCTCAAAGAGCTAAATTCTA
Done.