Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 114 of 193
Found at i:36368385 original size:31 final size:30
Alignment explanation
Indices: 36368344--36368472 Score: 91
Period size: 30 Copynumber: 4.3 Consensus size: 30
36368334 TAAGAAAAAC
*
36368344 AAGGTCAAAATCAAAAATTTTGGAAAGTTTT
1 AAGGTCAAAAT-AAAAATTTTAGAAAGTTTT
* * *
36368375 AAGGTTAAAATACAATTTTTAGAAAG-TTT
1 AAGGTCAAAATAAAAATTTTAGAAAGTTTT
* * ** *
36368404 GAGGACTAAAATGCAATTTTTAGAAAG-TTT
1 AAGGTC-AAAATAAAAATTTTAGAAAGTTTT
* ** * *
36368434 AGGGTCAAAATGTAATTTTTTGAAAGTTTT
1 AAGGTCAAAATAAAAATTTTAGAAAGTTTT
*
36368464 GAGGTCAAA
1 AAGGTCAAA
36368473 TTTGAATTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
29 24 0.30
30 47 0.58
31 10 0.12
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (30 bp):
AAGGTCAAAATAAAAATTTTAGAAAGTTTT
Found at i:36368470 original size:30 final size:30
Alignment explanation
Indices: 36368361--36368489 Score: 129
Period size: 30 Copynumber: 4.3 Consensus size: 30
36368351 AAATCAAAAA
* * * *
36368361 TTTTGGAAAGTTTTAAGGTTAAAATACAAT
1 TTTTAGAAAGTTTTGAGGTCAAAATGCAAT
*
36368391 TTTTAGAAAG-TTTGAGGACTAAAATGCAAT
1 TTTTAGAAAGTTTTGAGGTC-AAAATGCAAT
* *
36368421 TTTTAGAAAGTTTAG-GGTCAAAATGTAAT
1 TTTTAGAAAGTTTTGAGGTCAAAATGCAAT
* *
36368450 TTTTTGAAAGTTTTGAGGTCAAATTTG-AAT
1 TTTTAGAAAGTTTTGAGGTCAAA-ATGCAAT
*
36368480 TTTTGGAAAG
1 TTTTAGAAAG
36368490 ATTGAAGGTC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
29 28 0.34
30 50 0.60
31 5 0.06
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (30 bp):
TTTTAGAAAGTTTTGAGGTCAAAATGCAAT
Found at i:36368481 original size:59 final size:60
Alignment explanation
Indices: 36368361--36368499 Score: 149
Period size: 59 Copynumber: 2.3 Consensus size: 60
36368351 AAATCAAAAA
*
36368361 TTTTGGAAAGTTTTAAGGTTAAAATACAATTTTTAGAAAGTTTGAGGACTAAAATGCAAT
1 TTTTGGAAAGTTTTAAGGTCAAAATACAATTTTTAGAAAGTTTGAGGACTAAAATGCAAT
* * ** * * *
36368421 TTTTAGAAAG-TTTAGGGTCAAAATGTAATTTTTTGAAAGTTTTGAGGTC-AAATTTG-AAT
1 TTTTGGAAAGTTTTAAGGTCAAAATACAATTTTTAGAAAG-TTTGAGGACTAAA-ATGCAAT
* *
36368480 TTTTGGAAAGATTGAAGGTC
1 TTTTGGAAAGTTTTAAGGTC
36368500 GAAACATAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
59 39 0.60
60 26 0.40
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (60 bp):
TTTTGGAAAGTTTTAAGGTCAAAATACAATTTTTAGAAAGTTTGAGGACTAAAATGCAAT
Found at i:36370327 original size:59 final size:58
Alignment explanation
Indices: 36370213--36370586 Score: 415
Period size: 58 Copynumber: 6.4 Consensus size: 58
36370203 TTTAGATACC
* *
36370213 CGAGGGTAAAATGGTAA-TTTTGGTGAAAT-TGAGGTTAAAAATGGAATTTTTG-AGGTTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCAG-GGTTAAAAATGGAA-TTTTGAAAG-TT
* * *
36370271 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGGAGGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTT-GAAAGTT
* *
36370329 CTAGGGTAAAATGGTAA-TTTTGGTGAAACCAGGGTTAAAAATGGAATTTTGAAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTG-AAAGTT
* * *
36370387 CGAGGGTAAAATAGTAATTTTAGGTGAAAACAGGGTTAAAAAT-GAATTTTAGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTT-GAAAGTT
* * * * *
36370445 GGGGGGGTAAAATAGTAATTTTAGGTGAAAT-AGGG-TAAAAATGGAATGTTGGAAAGTT
1 -CGAGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAAT-TTTGAAAGTT
* * * *
36370503 CGGGGGTAAAAATGGTAATTTTTAGTGAAATCGGGGTTAAAAATGGAATTTT-AGAAGGT
1 CGAGGGT-AAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGA-AAGTT
36370562 CTGAGGGTAAAATGGTAATTTTTGG
1 C-GAGGGTAAAATGGTAATTTTTGG
36370587 AAGTTTCGGG
Statistics
Matches: 277, Mismatches: 23, Indels: 31
0.84 0.07 0.09
Matches are distributed among these distances:
57 35 0.13
58 126 0.45
59 98 0.35
60 18 0.06
ACGTcount: A:0.36, C:0.03, G:0.30, T:0.32
Consensus pattern (58 bp):
CGAGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGAATTTTGAAAGTT
Found at i:36370389 original size:116 final size:115
Alignment explanation
Indices: 36370215--36370583 Score: 469
Period size: 116 Copynumber: 3.2 Consensus size: 115
36370205 TAGATACCCG
* *
36370215 AGGGTAAAATGGTAATTTTGGTGAAATTGAGGTTAAAAATGGAATTTTTG-AGGTTTCGAGGGTA
1 AGGGTAAAATGGTAATTTTGGTGAAATAG-GGTTAAAAATGGAA-TTTTGAAAG-TTCGAGGGTA
*
36370279 AAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGGAGGTTCT
63 AAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGGTTCT
*
36370331 AGGGTAAAATGGTAATTTTGGTGAAACCAGGGTTAAAAATGGAATTTTGAAAAGTTCGAGGGTAA
1 AGGGTAAAATGGTAATTTTGGTGAAA-TAGGGTTAAAAATGGAATTTTG-AAAGTTCGAGGGTAA
* * * * * **
36370396 AATAGTAATTTTAGGTGAAAACAGGGTTAAAAAT-GAATTTTAGAAAGTTGGG
64 AATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGGTT-CT
* * * *
36370448 GGGGTAAAATAGTAATTTTAGGTGAAATAGGG-TAAAAATGGAATGTTGGAAAGTTCGGGGGTAA
1 AGGGTAAAATGGTAATTTT-GGTGAAATAGGGTTAAAAATGGAAT-TTTGAAAGTTCGAGGGT-A
*
36370512 AAATGGTAATTTTTAGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGG-TCT
63 AAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGGTTCT
36370564 GAGGGTAAAATGGTAATTTT
1 -AGGGTAAAATGGTAATTTT
36370584 TGGAAGTTTC
Statistics
Matches: 217, Mismatches: 26, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
115 5 0.02
116 112 0.52
117 81 0.37
118 19 0.09
ACGTcount: A:0.36, C:0.03, G:0.29, T:0.32
Consensus pattern (115 bp):
AGGGTAAAATGGTAATTTTGGTGAAATAGGGTTAAAAATGGAATTTTGAAAGTTCGAGGGTAAAA
TGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGGTTCT
Found at i:36371739 original size:9 final size:9
Alignment explanation
Indices: 36371727--36371757 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
36371717 TTTTCTTTAT
36371727 TTAATATTA
1 TTAATATTA
36371736 TTAATTATTA
1 TTAA-TATTA
36371746 TTAATATTA
1 TTAATATTA
36371755 TTA
1 TTA
36371758 TAAAATACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTAATATTA
Found at i:36372581 original size:17 final size:15
Alignment explanation
Indices: 36372561--36372648 Score: 77
Period size: 17 Copynumber: 5.3 Consensus size: 15
36372551 CTTTCTTTTT
36372561 AATTTATAATAATATTA
1 AATTTA-AATAA-ATTA
36372578 AATTTAAATTAAATTCA
1 AATTTAAA-TAAATT-A
*
36372595 AAATTAAACTAAAATTA
1 AATTTAAA-T-AAATTA
36372612 AATTTAAATAAATTTAA
1 AATTTAAATAAA-TT-A
* *
36372629 AATTAAAATAAATTT
1 AATTTAAATAAATTA
36372644 AATTT
1 AATTT
36372649 CAAAATGGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
15 7 0.12
16 10 0.17
17 38 0.63
18 5 0.08
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTTAAATAAATTA
Found at i:36372586 original size:6 final size:6
Alignment explanation
Indices: 36372575--36372645 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
36372565 TATAATAATA
* * * *
36372575 TTAAAT TTAAA- TTAAAT TCAAAA TTAAA- CTAAAA TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
36372620 -TAAAT TTAAAA TTAAA- ATAAAT TTAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAA
36372646 TTTCAAAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
4 4 0.08
5 13 0.25
6 34 0.67
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (6 bp):
TTAAAT
Found at i:36372590 original size:11 final size:11
Alignment explanation
Indices: 36372574--36372648 Score: 73
Period size: 11 Copynumber: 6.8 Consensus size: 11
36372564 TTATAATAAT
36372574 ATTAAATTTAA
1 ATTAAATTTAA
*
36372585 ATTAAATTCAAA
1 ATTAAATT-TAA
* *
36372597 ATTAAACTAAA
1 ATTAAATTTAA
36372608 ATTAAATTTAA
1 ATTAAATTTAA
36372619 A-TAAATTTAAA
1 ATTAAATTT-AA
*
36372630 ATTAAA-ATAA
1 ATTAAATTTAA
*
36372640 ATTTAATTT
1 ATTAAATTT
36372649 CAAAATGGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
10 14 0.26
11 26 0.49
12 13 0.25
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:36372654 original size:17 final size:17
Alignment explanation
Indices: 36372575--36372645 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
36372565 TATAATAATA
* *
36372575 TTAAATTTAAATTAAAT
1 TTAAAATTAAAATAAAT
* * *
36372592 TCAAAATTAAACTAAAA
1 TTAAAATTAAAATAAAT
*
36372609 TT-AAATTTAAATAAAT
1 TTAAAATTAAAATAAAT
36372625 TTAAAATTAAAATAAAT
1 TTAAAATTAAAATAAAT
36372642 TTAA
1 TTAA
36372646 TTTCAAAATG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 13 0.30
17 31 0.70
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAATTAAAATAAAT
Found at i:36373031 original size:38 final size:36
Alignment explanation
Indices: 36372917--36373492 Score: 293
Period size: 38 Copynumber: 15.4 Consensus size: 36
36372907 CATCTTGCTC
* *
36372917 TTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TTACTTCAATTTC--AGAGATAAAGA--TGATATCCAGCT
**
36372957 TTACTTCAATTTCA-AGAGGAA-ATGATAT---GCT
1 TTACTTCAATTTCAGAGATAAAGATGATATCCAGCT
36372988 CTTACTTCAATTTCAGAGATAAAGAGTCGATATCCAGCT
1 -TTACTTCAATTTCAGAGATAAAGA-T-GATATCCAGCT
* *
36373027 TTACTTCAATTTCAAGAGGATAGGAA-ATGATGT--TGCT
1 TTACTTCAATTTC-AGA-GATA--AAGATGATATCCAGCT
*
36373064 CTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCT
1 -TTACTTCAATTTCAGAGATAAAGA--TGATATCCAGCT
* *
36373103 TTACTTCAATTTCAAGAGGATAGGAA-ATGATGT--TGCT
1 TTACTTCAATTTC-AGA-GATA--AAGATGATATCCAGCT
36373140 CTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCT
1 -TTACTTCAATTTCAGAGATAAAGA--TGATATCCAGCT
* *
36373179 TTACTTCAATTTAAGAGGATAGGAA-ATGATGT---GCT
1 TTACTTCAATTTCAGA-GATA--AAGATGATATCCAGCT
36373214 CTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCT
1 -TTACTTCAATTTCAGAGATAAAGA--TGATATCCAGCT
* * *
36373253 TTACTTCAATTTCAAAAGGATAGGAA-ATGATCT-TA-C-
1 TTACTTCAATTTC-AGA-GATA--AAGATGATATCCAGCT
* * *
36373289 TTACTTCAATTTCAGAGATAACGACTCGTTATCCTGCT
1 TTACTTCAATTTCAGAGATAAAGA-T-GATATCCAGCT
** **
36373327 TTACTTCAATTTCAAGAGGATATGGCATG--ATCTTGCT
1 TTACTTCAATTTC-AGA-GATAAAG-ATGATATCCAGCT
* *
36373364 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCATCT
1 -TTACTTCAATTTCAGAGATAAAGA--TGATATCCAGCT
* * *
36373403 CTACTTCAATTTCAAGAGGATAGGAA-ATGATAT--TGTT
1 TTACTTCAATTTC-AGA-GATA--AAGATGATATCCAGCT
* *
36373440 CTTACTTCAATTTCAGAGATGAAA-ACTCGTTATCCAACT
1 -TTACTTCAATTTCAGAGAT-AAAGA-T-GATATCCAGCT
*
36373479 CTACTTCAATTTCA
1 TTACTTCAATTTCA
36373493 AGAGGATAGG
Statistics
Matches: 422, Mismatches: 48, Indels: 134
0.70 0.08 0.22
Matches are distributed among these distances:
31 2 0.00
32 15 0.04
33 8 0.02
34 16 0.04
35 19 0.05
36 55 0.13
37 50 0.12
38 150 0.36
39 56 0.13
40 36 0.09
41 7 0.02
42 8 0.02
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (36 bp):
TTACTTCAATTTCAGAGATAAAGATGATATCCAGCT
Found at i:36373086 original size:76 final size:76
Alignment explanation
Indices: 36372908--36373667 Score: 1042
Period size: 76 Copynumber: 10.1 Consensus size: 76
36372898 TCGAGGCTTC
* *
36372908 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTTCAATTTC-A-
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAG
36372971 A-G--AGGAAATG
64 AGGATAGGAAATG
* * * *
36372981 AT-ATGCTCTTACTTCAATTTCAGAGATAAAGAGTCGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
36373045 GATAGGAAATG
66 GATAGGAAATG
* * *
36373056 ATGTTGCTCTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
36373121 GATAGGAAATG
66 GATAGGAAATG
* *
36373132 ATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTT-AAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
36373196 GATAGGAAATG
66 GATAGGAAATG
* * * *
36373207 AT-GTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTTACTTCAATTTCAAAAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
36373271 GATAGGAAATG
66 GATAGGAAATG
* * * *
36373282 ATCTT--ACTTACTTCAATTTCAGAGATAACGACTCGTTATCCTGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
*
36373345 GATATGG-CATG
66 GATA-GGAAATG
* *
36373356 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCATCTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
36373421 GATAGGAAATG
66 GATAGGAAATG
* * * * *
36373432 ATATTGTTCTTACTTCAATTTCAGAGATGAAA-ACTCGTTATCCAACTCTACTTCAATTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGAT-AAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGA
36373496 GGATAGGAAATG
65 GGATAGGAAATG
* * * * * *
36373508 ATCTTGTTCTTACTTCAGTTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
*
36373573 GATAGGAACTG
66 GATAGGAAATG
* * * *
36373584 A-CGTTGCTCGTACTTCAATTTCAAAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGA
36373648 GGATAGGAAATG
65 GGATAGGAAATG
36373660 ATCTTGCT
1 ATCTTGCT
36373668 GCGGTTGATC
Statistics
Matches: 625, Mismatches: 46, Indels: 29
0.89 0.07 0.04
Matches are distributed among these distances:
70 34 0.05
71 1 0.00
72 19 0.03
73 3 0.00
74 117 0.19
75 52 0.08
76 395 0.63
77 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTTTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:36373645 original size:38 final size:38
Alignment explanation
Indices: 36372913--36373645 Score: 262
Period size: 38 Copynumber: 19.5 Consensus size: 38
36372903 GCTTCATCTT
*
36372913 GCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCA
1 GCTC-TACTTCAATTTCA-A-AGATAAAGACTTGATATCCA
* * **
36372954 ACTTTACTTCAATTTC-AAGAGGAA-A--TGATAT---
1 GCTCTACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * *
36372985 GCTCTTACTTCAATTTCAGAGATAAAGAGTCGATATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * ** * *
36373024 GCTTTACTTCAATTTCAAGAGGAT-AGGAAATGATGT--T
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
36373061 GCTCTTACTTCAATTTCAGAA-ATAAAGACTTGATATCCA
1 GCTC-TACTTCAATTTCA-AAGATAAAGACTTGATATCCA
* * ** * *
36373100 GCTTTACTTCAATTTCAAGAGGAT-AGGAAATGATGT--T
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
*
36373137 GCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * ** *
36373176 GCTTTACTTCAATTT-AAGAGGAT-AGGAAATGATGT---
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
* *
36373211 GCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * ** * *
36373250 GCTTTACTTCAATTTCAAAAGGAT-AGGAAATGATCT-TA
1 GCTCTACTTCAATTTC-AAA-GATAAAGACTTGATATCCA
* * * * *
36373288 -CT-TACTTCAATTTCAGAGATAACGACTCGTTATCCT
1 GCTCTACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * * * **
36373324 GCTTTACTTCAATTTCAAGAGGAT-ATGGCATG--ATCTT
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
* *
36373361 GCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * ** *
36373400 TCTCTACTTCAATTTCAAGAGGAT-AGGAAATGATAT--T
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
* * * *
36373437 GTTCTTACTTCAATTTCAGAGATGAAA-ACTCGTTATCCA
1 GCTC-TACTTCAATTTCAAAGAT-AAAGACTTGATATCCA
* * ** **
36373476 ACTCTACTTCAATTTCAAGAGGAT-AGGAAATG--ATCTT
1 GCTCTACTTCAATTTCAA-A-GATAAAGACTTGATATCCA
* * * * *
36373513 GTTCTTACTTCAGTTTCAGAGATGAAGACTTGTTATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
* * * ** *
36373552 ACTCTACTTCAATTTCAAGCGGAT-AGGAAC-TGACGT--T
1 GCTCTACTTCAATTTCAA--AGATAAAG-ACTTGATATCCA
*
36373589 GCTCGTACTTCAATTTCAAAGATAAAGACTTGTTATCCA
1 GCTC-TACTTCAATTTCAAAGATAAAGACTTGATATCCA
*
36373628 ACTCTACTTCAATTTCAA
1 GCTCTACTTCAATTTCAA
36373646 GAGGATAGGA
Statistics
Matches: 497, Mismatches: 131, Indels: 131
0.65 0.17 0.17
Matches are distributed among these distances:
31 2 0.00
32 12 0.02
33 5 0.01
34 9 0.02
35 14 0.03
36 57 0.11
37 75 0.15
38 207 0.42
39 80 0.16
40 34 0.07
41 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (38 bp):
GCTCTACTTCAATTTCAAAGATAAAGACTTGATATCCA
Found at i:36385866 original size:58 final size:58
Alignment explanation
Indices: 36385744--36385882 Score: 160
Period size: 58 Copynumber: 2.4 Consensus size: 58
36385734 TTTGGATACC
* *
36385744 CGAGGGCAAAATGGTAA-TTTTGGTAAAATCGAGGTTAAAATAGAATTTTTGAGGCTT
1 CGAGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAATAGAATTTTAGAGGCTT
* * *
36385801 CGAGGGTAAAATGGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTAGAAGG-TT
1 CGAGGGTAAAATGGTAATTTTTGGTAAAATC-GAGGTT-AAAATAGAATTTTAG-AGGCTT
* *
36385860 -GGGGGTAAAATGGTGATTTTTGG
1 CGAGGGTAAAATGGTAATTTTTGG
36385883 AAGTTTCGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
57 17 0.24
58 36 0.51
59 15 0.21
60 3 0.04
ACGTcount: A:0.32, C:0.04, G:0.31, T:0.32
Consensus pattern (58 bp):
CGAGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAATAGAATTTTAGAGGCTT
Found at i:36386270 original size:159 final size:160
Alignment explanation
Indices: 36386033--36386338 Score: 499
Period size: 159 Copynumber: 1.9 Consensus size: 160
36386023 ATTGTAAATA
* *
36386033 TTGAAAAATTCTTGGGCCAATTTCGTAATTAAGTAAAAGTTGATTTAGGGATTAAATTAAAACAA
1 TTGAAAAATTCTTAGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAAACAA
* *
36386098 ATAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAAA-TGACACGTGACAGTCCT-TGGTGC
66 ATAAAAATATCAGGGACTAAATGCATAAATAAGCCAAAAAGTAACACGTGACAG-CCTCTGGTGC
*
36386161 AGTCAAATAGTCAAAGGACTATTTATAAACC
130 AGTCAAACAGTCAAAGGACTATTTATAAACC
*
36386192 TTGAAAAATTCTTAGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAAACAA
1 TTGAAAAATTCTTAGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAAACAA
* * * *
36386257 ATTAAAATATCAGGGACTTAATGCGTAAATAAGCCAAAAAGTAACACGTGGCAGCCTCTGGTGCA
66 ATAAAAATATCAGGGACTAAATGCATAAATAAGCCAAAAAGTAACACGTGACAGCCTCTGGTGCA
36386322 GTCAAACAGTCAAAGGA
131 GTCAAACAGTCAAAGGA
36386339 TTAAATTGAA
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
159 101 0.75
160 34 0.25
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (160 bp):
TTGAAAAATTCTTAGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTAAAACAA
ATAAAAATATCAGGGACTAAATGCATAAATAAGCCAAAAAGTAACACGTGACAGCCTCTGGTGCA
GTCAAACAGTCAAAGGACTATTTATAAACC
Found at i:36386994 original size:3 final size:3
Alignment explanation
Indices: 36386986--36387065 Score: 56
Period size: 3 Copynumber: 26.0 Consensus size: 3
36386976 TCTTTTCTTT
* * **
36386986 TTA TTA TTA TTTA ATA TTA TTAA TTA TTA TTA ATA TTA TTA -TA AAA
1 TTA TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
* *
36387032 ATA CATA TTTA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
36387066 AAACAGTCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
2 4 0.06
3 49 0.77
4 11 0.17
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:36387883 original size:11 final size:11
Alignment explanation
Indices: 36387867--36387921 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
36387857 TTATAATAAT
36387867 ATTAAATTTAA
1 ATTAAATTTAA
*
36387878 ATTAAATTCAAA
1 ATTAAATT-TAA
* *
36387890 ATTAAACTAAA
1 ATTAAATTTAA
*
36387901 ATTGAATTTAA
1 ATTAAATTTAA
36387912 A-TAAATTTAA
1 ATTAAATTTAA
36387922 TTTCAAAATG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
10 8 0.22
11 20 0.54
12 9 0.24
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:36388400 original size:8 final size:9
Alignment explanation
Indices: 36388369--36388402 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
36388359 TCAATGCTCC
36388369 TTTTTGTAT
1 TTTTTGTAT
36388378 TGATTTTGTAT
1 T--TTTTGTAT
36388389 TTTTTGTAT
1 TTTTTGTAT
36388398 TTTTT
1 TTTTT
36388403 TCATGGGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 14 0.61
11 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (9 bp):
TTTTTGTAT
Found at i:36388492 original size:14 final size:13
Alignment explanation
Indices: 36388473--36388517 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
36388463 ATCAAAAATA
36388473 CTGTTTCTTTGCCT
1 CTGTTT-TTTGCCT
36388487 CTG-TTTTTGCCT
1 CTGTTTTTTGCCT
*
36388499 CTATTTTTTG-CT
1 CTGTTTTTTGCCT
36388511 CT-TTTTT
1 CTGTTTTT
36388518 GCAGGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 5 0.17
12 13 0.45
13 8 0.28
14 3 0.10
ACGTcount: A:0.02, C:0.22, G:0.11, T:0.64
Consensus pattern (13 bp):
CTGTTTTTTGCCT
Found at i:36389167 original size:19 final size:19
Alignment explanation
Indices: 36389136--36389178 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
36389126 GGGTAAATAG
*
36389136 TTAA-TTAAATTATTTTAT
1 TTAATTTAAATTATATTAT
*
36389154 TTAATTTAATTTATATTAT
1 TTAATTTAAATTATATTAT
36389173 TTAATT
1 TTAATT
36389179 ATATTGCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTAATTTAAATTATATTAT
Found at i:36391703 original size:17 final size:18
Alignment explanation
Indices: 36391681--36391714 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
36391671 TTTTTAATTA
36391681 AATAAATTT-AATTAATC
1 AATAAATTTAAATTAATC
36391698 AATAAATTTAAATTAAT
1 AATAAATTTAAATTAAT
36391715 TATACCTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAAATTTAAATTAATC
Found at i:36396668 original size:6 final size:7
Alignment explanation
Indices: 36396657--36396687 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
36396647 AAAAAAAAAA
36396657 CTTTTTG
1 CTTTTTG
36396664 C-TTTTG
1 CTTTTTG
36396670 CTTTTTG
1 CTTTTTG
36396677 CTTTTTG
1 CTTTTTG
36396684 CTTT
1 CTTT
36396688 GTTTTCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.00, C:0.16, G:0.13, T:0.71
Consensus pattern (7 bp):
CTTTTTG
Found at i:36396966 original size:14 final size:15
Alignment explanation
Indices: 36396949--36396977 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36396939 ATTTATTTTT
36396949 ATATAAAAA-TAATA
1 ATATAAAAATTAATA
36396963 ATATAAAAATTAATA
1 ATATAAAAATTAATA
36396978 TGGACCAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATATAAAAATTAATA
Found at i:36397161 original size:15 final size:14
Alignment explanation
Indices: 36397141--36397171 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
36397131 GTATTAAATA
36397141 TTCAATTACTTTTAT
1 TTCAATTA-TTTTAT
36397156 TTCAATTATTTTAT
1 TTCAATTATTTTAT
36397170 TT
1 TT
36397172 TATTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (14 bp):
TTCAATTATTTTAT
Found at i:36399438 original size:12 final size:12
Alignment explanation
Indices: 36399419--36399506 Score: 81
Period size: 12 Copynumber: 7.4 Consensus size: 12
36399409 TACGTCCGCA
36399419 ATATACATACAT
1 ATATACATACAT
*
36399431 ACATACAT--AT
1 ATATACATACAT
*
36399441 ATATATATACAT
1 ATATACATACAT
*
36399453 ATATACATATTAT
1 ATATACATA-CAT
* *
36399466 ATATATATATAT
1 ATATACATACAT
*
36399478 ATATACATATAT
1 ATATACATACAT
* *
36399490 ATATATATATAT
1 ATATACATACAT
36399502 ATATA
1 ATATA
36399507 TGTCAGTTCA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
10 8 0.12
12 47 0.72
13 10 0.15
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATACATACAT
Found at i:36399444 original size:2 final size:2
Alignment explanation
Indices: 36399437--36399507 Score: 108
Period size: 2 Copynumber: 36.0 Consensus size: 2
36399427 ACATACATAC
* *
36399437 AT AT AT AT AT AT AC AT AT AT AC AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
36399478 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36399508 GTCAGTTCAG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
1 1 0.02
2 61 0.98
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:36399462 original size:8 final size:8
Alignment explanation
Indices: 36399425--36399506 Score: 96
Period size: 8 Copynumber: 10.4 Consensus size: 8
36399415 CGCAATATAC
*
36399425 ATACATAC
1 ATACATAT
36399433 ATACATAT
1 ATACATAT
36399441 AT--ATAT
1 ATACATAT
36399447 ATACATAT
1 ATACATAT
36399455 ATACATATT
1 ATACATA-T
*
36399464 ATATATAT
1 ATACATAT
*
36399472 ATATATAT
1 ATACATAT
36399480 ATACATAT
1 ATACATAT
*
36399488 ATATATAT
1 ATACATAT
*
36399496 ATATATAT
1 ATACATAT
36399504 ATA
1 ATA
36399507 TGTCAGTTCA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
6 6 0.09
8 54 0.81
9 7 0.10
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (8 bp):
ATACATAT
Found at i:36399606 original size:37 final size:38
Alignment explanation
Indices: 36399556--36399644 Score: 117
Period size: 37 Copynumber: 2.4 Consensus size: 38
36399546 TCCACTATCA
* * **
36399556 TGGTGTGTAGGGTGAATGGGCCTACCATA-ACCTTTTG
1 TGGTGTGCAGGGTGAATGAGCCTACCATATACCAATTG
**
36399593 TGGTGTGCAGGGTGAATGAGCCTACCATATGTCAATTG
1 TGGTGTGCAGGGTGAATGAGCCTACCATATACCAATTG
36399631 TGGTGTGCAGGGTG
1 TGGTGTGCAGGGTG
36399645 GTCCGAGTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
37 27 0.60
38 18 0.40
ACGTcount: A:0.19, C:0.15, G:0.36, T:0.30
Consensus pattern (38 bp):
TGGTGTGCAGGGTGAATGAGCCTACCATATACCAATTG
Found at i:36404746 original size:15 final size:15
Alignment explanation
Indices: 36404726--36404756 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36404716 AAGTACATAA
36404726 AGTCCACCATATGAG
1 AGTCCACCATATGAG
36404741 AGTCCACCATATGAG
1 AGTCCACCATATGAG
36404756 A
1 A
36404757 AAATAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (15 bp):
AGTCCACCATATGAG
Found at i:36404779 original size:20 final size:20
Alignment explanation
Indices: 36404754--36404794 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36404744 CCACCATATG
36404754 AGAAAATAAAATCAAGTACT
1 AGAAAATAAAATCAAGTACT
36404774 AGAAAATAAAATCAAGTACT
1 AGAAAATAAAATCAAGTACT
36404794 A
1 A
36404795 AAGTTCAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (20 bp):
AGAAAATAAAATCAAGTACT
Found at i:36408780 original size:10 final size:10
Alignment explanation
Indices: 36408765--36408789 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36408755 TAATCATATA
36408765 TTTCTATTGC
1 TTTCTATTGC
36408775 TTTCTATTGC
1 TTTCTATTGC
36408785 TTTCT
1 TTTCT
36408790 TTTTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.08, T:0.64
Consensus pattern (10 bp):
TTTCTATTGC
Found at i:36412854 original size:33 final size:34
Alignment explanation
Indices: 36412817--36412888 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
36412807 TATATTTGAC
36412817 TTTTATCAATTT-TAAAAAAAAATCATTTTAATT
1 TTTTATCAATTTATAAAAAAAAATCATTTTAATT
* * *
36412850 TTTTATTAATTTCATAGAAAAAAGTCATTTTAATT
1 TTTTATCAATTT-ATAAAAAAAAATCATTTTAATT
36412885 TTTT
1 TTTT
36412889 CATCTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 11 0.32
35 23 0.68
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (34 bp):
TTTTATCAATTTATAAAAAAAAATCATTTTAATT
Found at i:36415910 original size:20 final size:21
Alignment explanation
Indices: 36415859--36415907 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
36415849 ATTAATTTTT
*
36415859 AAAAA-ATTAAAAAAATCAAA
1 AAAAATATTTAAAAAATCAAA
36415879 AAAAATATTTAAAAAAT--AA
1 AAAAATATTTAAAAAATCAAA
36415898 AAAAATATTT
1 AAAAATATTT
36415908 TAATATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 12 0.44
20 5 0.19
21 10 0.37
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAATATTTAAAAAATCAAA
Found at i:36415912 original size:8 final size:8
Alignment explanation
Indices: 36415901--36415931 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
36415891 AAAATAAAAA
36415901 AATATTTT
1 AATATTTT
36415909 AATATTTT
1 AATATTTT
36415917 AATATTTT
1 AATATTTT
*
36415925 AAAATTT
1 AATATTT
36415932 AAAAGTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AATATTTT
Found at i:36434175 original size:27 final size:27
Alignment explanation
Indices: 36434145--36434199 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
36434135 TTTTCGTTTA
*
36434145 ATTTAGAGTTAAATTGATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
* *
36434172 ATTTAAATTTAAATTTATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
36434199 A
1 A
36434200 AATTTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (27 bp):
ATTTAAAGTTAAATTGATTTTAAATTT
Found at i:36434181 original size:6 final size:6
Alignment explanation
Indices: 36434163--36434262 Score: 100
Period size: 6 Copynumber: 16.8 Consensus size: 6
36434153 TTAAATTGAT
*
36434163 TTTAAA TTT--A TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTAATTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA--A
* ** *
36434210 TTTAAA TTT-AA TTTGAA TTTAAA TTTAAA TAAAAA TTAAAA TATTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA
36434258 TTTAA
1 TTTAA
36434263 CATTAAAAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.05
5 9 0.11
6 56 0.70
7 5 0.06
8 6 0.08
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:36434231 original size:11 final size:11
Alignment explanation
Indices: 36434153--36434239 Score: 70
Period size: 11 Copynumber: 7.5 Consensus size: 11
36434143 TAATTTAGAG
* *
36434153 TTAAATTGATT
1 TTAAATTTAAT
36434164 TTAAATTT-AT
1 TTAAATTTAAT
36434174 TTAAATTTAAAT
1 TTAAATTT-AAT
*
36434186 TT-ATTTTAAAT
1 TTAAATTT-AAT
36434197 TTAAATTTAATTAT
1 TTAAATTT-A--AT
36434211 TTAAATTTAAT
1 TTAAATTTAAT
*
36434222 TTGAATTTAAAT
1 TTAAATTT-AAT
36434234 TTAAAT
1 TTAAAT
36434240 AAAAATTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
10 9 0.14
11 26 0.41
12 18 0.28
13 1 0.02
14 10 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:36434237 original size:17 final size:17
Alignment explanation
Indices: 36434163--36434237 Score: 104
Period size: 17 Copynumber: 4.6 Consensus size: 17
36434153 TTAAATTGAT
36434163 TTTAAATTT-ATTTAAA
1 TTTAAATTTAATTTAAA
*
36434179 TTTAAATTTATTTTAAA
1 TTTAAATTTAATTTAAA
36434196 TTTAAATTTAA-TT--A
1 TTTAAATTTAATTTAAA
*
36434210 TTTAAATTTAATTTGAA
1 TTTAAATTTAATTTAAA
36434227 TTTAAATTTAA
1 TTTAAATTTAA
36434238 ATAAAAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
14 12 0.23
15 2 0.04
16 11 0.21
17 28 0.53
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (17 bp):
TTTAAATTTAATTTAAA
Found at i:36434260 original size:31 final size:30
Alignment explanation
Indices: 36434190--36434262 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
36434180 TTAAATTTAT
** *
36434190 TTTAAATTTAAATTTAATTATTTAAATTTAA
1 TTTAAATTTAAATTTAA-TATAAAAATTAAA
*
36434221 TTTGAATTTAAATTTAA-ATAAAAATTAAAA
1 TTTAAATTTAAATTTAATATAAAAATT-AAA
36434251 TATTAAATTTAA
1 T-TTAAATTTAA
36434263 CATTAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 7 0.20
30 3 0.09
31 25 0.71
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (30 bp):
TTTAAATTTAAATTTAATATAAAAATTAAA
Found at i:36434260 original size:37 final size:36
Alignment explanation
Indices: 36434176--36434262 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 36
36434166 AAATTTATTT
* ** *
36434176 AAATTTAAATTTATTTTAAATTTAAATTTAATTATTT
1 AAATTTAAATTTAATTTAAATTTAAA-TTAAAAATTA
36434213 AAATTT-AATTTGAATTTAAATTTAAA-TAAAAATTA
1 AAATTTAAATTT-AATTTAAATTTAAATTAAAAATTA
36434248 AAATATTAAATTTAA
1 AAAT-TTAAATTTAA
36434263 CATTAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
35 10 0.23
36 9 0.21
37 24 0.56
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (36 bp):
AAATTTAAATTTAATTTAAATTTAAATTAAAAATTA
Found at i:36435481 original size:27 final size:26
Alignment explanation
Indices: 36435437--36435487 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
36435427 GCGACTGGGG
36435437 AGGATCGGAGCGCGACCGGCGACGGC
1 AGGATCGGAGCGCGACCGGCGACGGC
* *
36435463 AGGATGCGGCGCGTGACCGGCGACG
1 AGGAT-CGGAGCGCGACCGGCGACG
36435488 CGCTTTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.18, C:0.29, G:0.47, T:0.06
Consensus pattern (26 bp):
AGGATCGGAGCGCGACCGGCGACGGC
Found at i:36435520 original size:16 final size:18
Alignment explanation
Indices: 36435499--36435531 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
36435489 GCTTTGGACT
36435499 GCCGGCC-TGGT-AGGTG
1 GCCGGCCATGGTGAGGTG
36435515 GCCGGCCATGGTGAGGT
1 GCCGGCCATGGTGAGGT
36435532 TGAGAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.09, C:0.24, G:0.48, T:0.18
Consensus pattern (18 bp):
GCCGGCCATGGTGAGGTG
Found at i:36435966 original size:162 final size:163
Alignment explanation
Indices: 36435790--36436103 Score: 497
Period size: 163 Copynumber: 1.9 Consensus size: 163
36435780 GCTTTTCAAT
*
36435790 TTAGTCCTTTGACTGTTTGACTATACCA-GAGGCTGCCACGTGTCATTTTTTGGATTATTTATGC
1 TTAGTCCCTTGACTGTTTGACTATACCAGGA-GCTGCCACGTGTCATTTTTTGGATTATTTATGC
* * *
36435854 ATTTAGTCC-CTGACATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTTAATTAC
65 ATTTAGTCCTCTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTAC
36435918 AAAATTGGCCCAAGAATTTTTCATGGTTTATAAA
130 AAAATTGGCCCAAGAATTTTTCATGGTTTATAAA
* * *
36435952 TTAGTCCCTTGACTGTTTGACTGTACCAGGAGCTGCCACGTGTCATTTTTTGGCTTATTTCTGCA
1 TTAGTCCCTTGACTGTTTGACTATACCAGGAGCTGCCACGTGTCATTTTTTGGATTATTTATGCA
* *** *
36436017 TTTAGTCCTTTTTTATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACG
66 TTTAGTCCTCTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACA
36436082 AAATTGGCCCAAGAATTTTTCA
131 AAATTGGCCCAAGAATTTTTCA
36436104 AGATTCACAA
Statistics
Matches: 138, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
162 66 0.48
163 72 0.52
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (163 bp):
TTAGTCCCTTGACTGTTTGACTATACCAGGAGCTGCCACGTGTCATTTTTTGGATTATTTATGCA
TTTAGTCCTCTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACA
AAATTGGCCCAAGAATTTTTCATGGTTTATAAA
Found at i:36436153 original size:162 final size:161
Alignment explanation
Indices: 36435814--36436158 Score: 442
Period size: 163 Copynumber: 2.1 Consensus size: 161
36435804 GTTTGACTAT
*
36435814 ACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCATTTAGTCCCTGACATTTTTAATTT
1 ACCAGGGGCTGCCACGTGTCATTTTTTGGATTATTTATGCATTTAGTCCCTGACATTTTTAATTT
* * * * *
36435879 GTTTTAATTTAATCCCTAAATCAACTTTTATTTAATTACAAAATTGGCCCAAGAATTTTTCATGG
66 ATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAAATTGGCCCAAGAATTTTTCAAGA
* * * * *
36435944 TTTATAAATTAGTCCCTTGACTGTTTGACTG
131 TTCACAAATTAATCCCTTGACTGCTGGACTG
* * * * ***
36435975 TACCAGGAGCTGCCACGTGTCATTTTTTGGCTTATTTCTGCATTTAGTCCTTTTTTATTTTTAAT
1 -ACCAGGGGCTGCCACGTGTCATTTTTTGGATTATTTATGCATTTAGTCC-CTGACATTTTTAAT
*
36436040 TTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACGAAATTGGCCCAAGAATTTTTCAA
64 TTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAAATTGGCCCAAGAATTTTTCAA
* *
36436105 GATTCACAACTTAATCCTTTGACTGCTGGA-TG
129 GATTCACAAATTAATCCCTTGACTGCTGGACTG
*
36436137 -CCTGTGGGGCTGCCACGTGTCA
1 ACC--AGGGGCTGCCACGTGTCA
36436159 CCCACTCTTT
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
160 2 0.01
162 63 0.40
163 92 0.59
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (161 bp):
ACCAGGGGCTGCCACGTGTCATTTTTTGGATTATTTATGCATTTAGTCCCTGACATTTTTAATTT
ATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAAATTGGCCCAAGAATTTTTCAAGA
TTCACAAATTAATCCCTTGACTGCTGGACTG
Found at i:36436273 original size:29 final size:29
Alignment explanation
Indices: 36436225--36436391 Score: 116
Period size: 30 Copynumber: 5.7 Consensus size: 29
36436215 GACCCTGAAA
*
36436225 CTTCTAAAAATTACCATTTTACCCCCGAAT
1 CTTCCAAAAA-TACCATTTTACCCCCGAAT
* * *
36436255 CTTCTAAAAAT-CCATTTTTAACTCCG-AT
1 CTTCCAAAAATACCA-TTTTACCCCCGAAT
*
36436283 -TTCACCGAAAATTACCATTTTACCCCCGAAT
1 CTT--CC-AAAAATACCATTTTACCCCCGAAT
* *
36436314 CTTCC-AAAATTCCATTTTTAACCCCG-AT
1 CTTCCAAAAATACCA-TTTTACCCCCGAAT
36436342 -TTCACCAAAAATCACCATTTTACCCCCGAA-
1 CTT--CCAAAAAT-ACCATTTTACCCCCGAAT
*
36436372 CTTTCC-AAAATTCCATTTTA
1 C-TTCCAAAAATACCATTTTA
36436392 ACCCTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
27 4 0.04
28 22 0.20
29 28 0.25
30 43 0.39
31 9 0.08
32 4 0.04
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.34
Consensus pattern (29 bp):
CTTCCAAAAATACCATTTTACCCCCGAAT
Found at i:36436303 original size:59 final size:57
Alignment explanation
Indices: 36436231--36436419 Score: 260
Period size: 59 Copynumber: 3.3 Consensus size: 57
36436221 GAAACTTCTA
* *
36436231 AAAATTACCATTTTACCCCCGAATCTTCTAAAAATCCATTTTTAACTCCGATTTCACC
1 AAAATTACCATTTTACCCCCGAATCTTCCAAAATTCCATTTTTAAC-CCGATTTCACC
36436289 GAAAATTACCATTTTACCCCCGAATCTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 -AAAATTACCATTTTACCCCCGAATCTTCCAAAATTCCATTTTTAA-CCCGATTTCACC
* *
36436348 AAAAATCACCATTTTACCCCCGAA-CTTTCCAAAATTCCA-TTTTAACCCTGATTT-ATC
1 -AAAATTACCATTTTACCCCCGAATC-TTCCAAAATTCCATTTTTAACCC-GATTTCACC
36436405 AAAATTA-CATTTTAC
1 AAAATTACCATTTTAC
36436420 TTCCTTTGGG
Statistics
Matches: 121, Mismatches: 6, Indels: 10
0.88 0.04 0.07
Matches are distributed among these distances:
55 8 0.07
56 6 0.05
57 5 0.04
58 12 0.10
59 89 0.74
60 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (57 bp):
AAAATTACCATTTTACCCCCGAATCTTCCAAAATTCCATTTTTAACCCGATTTCACC
Found at i:36436395 original size:29 final size:27
Alignment explanation
Indices: 36436231--36436419 Score: 132
Period size: 29 Copynumber: 6.6 Consensus size: 27
36436221 GAAACTTCTA
*
36436231 AAAATTACCATTTTACCCCCGAATCTTCT
1 AAAATT-CCATTTTACCCCCGAAT-TTCC
* * *
36436260 AAAAATCCATTTTTAACTCCG-ATTTCACC
1 AAAATTCCA-TTTTACCCCCGAATTT--CC
36436289 GAAAATTACCATTTTACCCCCGAATCTTCC
1 -AAAATT-CCATTTTACCCCCGAAT-TTCC
*
36436319 AAAATTCCATTTTTAACCCCG-ATTTCACC
1 AAAATTCCA-TTTTACCCCCGAATTT--CC
*
36436348 AAAAATCACCATTTTACCCCCGAACTTTCC
1 -AAAAT-TCCATTTTACCCCCGAA-TTTCC
* * *
36436378 AAAATTCCATTTTAACCCTG-ATTTATC
1 AAAATTCCATTTTACCCCCGAATTT-CC
*
36436405 AAAATTACATTTTAC
1 AAAATTCCATTTTAC
36436420 TTCCTTTGGG
Statistics
Matches: 129, Mismatches: 16, Indels: 32
0.73 0.09 0.18
Matches are distributed among these distances:
26 3 0.02
27 19 0.15
28 22 0.17
29 38 0.29
30 33 0.26
31 9 0.07
32 5 0.04
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAATTCCATTTTACCCCCGAATTTCC
Found at i:36448654 original size:68 final size:69
Alignment explanation
Indices: 36448545--36449222 Score: 1051
Period size: 69 Copynumber: 9.9 Consensus size: 69
36448535 CATTTCCAAT
* * * * *
36448545 CCCTTGAAATTGAAGTAGAG-AGGAAAACACGCCTTTATCTCTGAAATTGAAGTAAGAACAATGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448609 CATC
66 CATC
36448613 CCCTTGAAATTGAAGTAGAG-AGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448677 CATC
66 CATC
* *
36448681 CCCTTGAAATTGAAGTAGAG-AGGATAACATGTCTTCATCTCTGAAATTGAAGTAAGAGCAATGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448745 CATC
66 CATC
* *
36448749 CCCTTGAAATTAAAGTAGAG-AGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAATGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448813 CATC
66 CATC
*
36448817 CCCTTGAAATTAAAGTAGAG-AGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448881 CATC
66 CATC
* * *
36448885 CTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36448950 CATC
66 CATC
* * * * *
36448954 CTCTTGAAATTGAAGTAGAGTTGGATAATACGCCTTTATCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36449019 CATC
66 CATC
* * *
36449023 CTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36449088 CATC
66 CATC
* * * *
36449092 CTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCACCTCTGAAATTGAAGTAAGAGCAACGT
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
36449157 CATC
66 CATC
* * * * *
36449161 CTCTTGAAATTGAAGTAGAGTTGGATAACACGCCTTTATCTCTGAAATTGAAGCAAGAGCAA
1 CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
36449223 GATCATTTCC
Statistics
Matches: 581, Mismatches: 28, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
68 280 0.48
69 301 0.52
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (69 bp):
CCCTTGAAATTGAAGTAGAGTAGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGT
CATC
Found at i:36449571 original size:27 final size:27
Alignment explanation
Indices: 36449541--36449595 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
36449531 TTTTCGTTTA
*
36449541 ATTTAGAGTTAAATTGATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
* *
36449568 ATTTAAATTTAAATTTATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
36449595 A
1 A
36449596 AATTTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (27 bp):
ATTTAAAGTTAAATTGATTTTAAATTT
Found at i:36449577 original size:6 final size:6
Alignment explanation
Indices: 36449559--36449657 Score: 91
Period size: 6 Copynumber: 16.8 Consensus size: 6
36449549 TTAAATTGAT
*
36449559 TTTAAA TTT--A TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTAATTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA--A
* ** *
36449606 TTTAAA TTT-AA TTTGAA TTTAAA TTTAAA TAAAAA TTAAAA TATT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA
36449653 TTTAA
1 TTTAA
36449658 CATTAAAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
4 4 0.05
5 11 0.14
6 56 0.72
7 1 0.01
8 6 0.08
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:36449627 original size:11 final size:11
Alignment explanation
Indices: 36449549--36449635 Score: 70
Period size: 11 Copynumber: 7.5 Consensus size: 11
36449539 TAATTTAGAG
* *
36449549 TTAAATTGATT
1 TTAAATTTAAT
36449560 TTAAATTT-AT
1 TTAAATTTAAT
36449570 TTAAATTTAAAT
1 TTAAATTT-AAT
*
36449582 TT-ATTTTAAAT
1 TTAAATTT-AAT
36449593 TTAAATTTAATTAT
1 TTAAATTT-A--AT
36449607 TTAAATTTAAT
1 TTAAATTTAAT
*
36449618 TTGAATTTAAAT
1 TTAAATTT-AAT
36449630 TTAAAT
1 TTAAAT
36449636 AAAAATTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
10 9 0.14
11 26 0.41
12 18 0.28
13 1 0.02
14 10 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:36449633 original size:17 final size:17
Alignment explanation
Indices: 36449559--36449657 Score: 107
Period size: 17 Copynumber: 5.9 Consensus size: 17
36449549 TTAAATTGAT
36449559 TTTAAATTT-ATTTAAA
1 TTTAAATTTAATTTAAA
*
36449575 TTTAAATTTATTTTAAA
1 TTTAAATTTAATTTAAA
36449592 TTTAAATTTAA-TT--A
1 TTTAAATTTAATTTAAA
*
36449606 TTTAAATTTAATTTGAA
1 TTTAAATTTAATTTAAA
**
36449623 TTTAAATTTAAATAAAAA
1 TTTAAATTT-AATTTAAA
*
36449641 TTAAAATATTAATTTAA
1 TTTAAAT-TTAATTTAA
36449658 CATTAAAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
14 12 0.17
15 2 0.03
16 11 0.16
17 26 0.38
18 16 0.23
19 2 0.03
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (17 bp):
TTTAAATTTAATTTAAA
Found at i:36451469 original size:161 final size:162
Alignment explanation
Indices: 36451196--36451507 Score: 486
Period size: 161 Copynumber: 1.9 Consensus size: 162
36451186 GCTTTTCAAT
*
36451196 TTAGTCCTTTGACTGTTTGACTATACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCA
1 TTAGTCCCTTGACTGTTTGACTATACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCA
* * *
36451261 TTTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTTAATTACAA
66 TTTAGTCCCTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAA
36451326 AATTGGCCCAAGAATTTTTCATGGTTTATAAA
131 AATTGGCCCAAGAATTTTTCATGGTTTATAAA
* *
36451358 TTAGTCCCTTGACTGTTTGACTGTACCAG-GAGCTGCCACGTGTCA-TTTTTGGCTTATTTATGC
1 TTAGTCCCTTGACTGTTTGACTATACCAGAG-GCTGCCACGTGTCATTTTTTGGATTATTTATGC
* ***
36451421 A-TTAGTCCTTTTTTATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTAC
65 ATTTAGTCC-CTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTAC
*
36451485 GAAATTGGCCCAAGAATTTTTCA
129 AAAATTGGCCCAAGAATTTTTCA
36451508 AGATTCACAA
Statistics
Matches: 137, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
160 7 0.05
161 89 0.65
162 41 0.30
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (162 bp):
TTAGTCCCTTGACTGTTTGACTATACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCA
TTTAGTCCCTGACATTTTTAATTTATCTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAA
AATTGGCCCAAGAATTTTTCATGGTTTATAAA
Found at i:36451652 original size:29 final size:29
Alignment explanation
Indices: 36451602--36451861 Score: 119
Period size: 29 Copynumber: 8.9 Consensus size: 29
36451592 CCCCAAATAG
* * **
36451602 TCCAGAAATTGCATTTCGACCCTGAAACT
1 TCCAAAAATTCCATTTTAACCCTGAAACT
* *
36451631 TCCAAAAATTACCATTTT-ACCCCGAATCT
1 TCCAAAAATT-CCATTTTAACCCTGAAACT
* * *
36451660 TCTAAAAA-TCCATTTGTAACCCCG--ATT
1 TCCAAAAATTCCATTT-TAACCCTGAAACT
* * * *
36451687 TCACCGAAAATTACCATTTTACCCCCCGAATCT
1 T--CCAAAAATT-CCATTTTA-ACCCTGAAACT
* *
36451720 T-CTAAAATTCCATTTTTAACCCTG--ATT
1 TCCAAAAATTCCA-TTTTAACCCTGAAACT
* * *
36451747 TCACCGAAAATTACCATTTTACCCCTGAATCT
1 T--CCAAAAATT-CCATTTTAACCCTGAAACT
**
36451779 TCC-AAAATTCCATTTTTAACCCT-AATTT
1 TCCAAAAATTCCA-TTTTAACCCTGAAACT
* *
36451807 CTCCAAAAATCACCATTTTACCCCTG-AACTT
1 -TCCAAAAAT-TCCATTTTAACCCTGAAAC-T
36451838 TCC-AAAATTCCATTTTAACCCTGA
1 TCCAAAAATTCCATTTTAACCCTGA
36451862 TTTTATCAAA
Statistics
Matches: 177, Mismatches: 30, Indels: 48
0.69 0.12 0.19
Matches are distributed among these distances:
27 10 0.06
28 22 0.12
29 66 0.37
30 57 0.32
31 18 0.10
32 2 0.01
33 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (29 bp):
TCCAAAAATTCCATTTTAACCCTGAAACT
Found at i:36451807 original size:59 final size:59
Alignment explanation
Indices: 36451635--36451889 Score: 347
Period size: 59 Copynumber: 4.4 Consensus size: 59
36451625 GAAACTTCCA
* * * *
36451635 AAAATTACCATTTTACCCC-GAATCTTCTAAAAATCCATTTGTAACCCCGATTTCACCG
1 AAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCTGATTTCACCG
* *
36451693 AAAATTACCATTTTACCCCCCGAATCTTCTAAAATTCCATTTTTAACCCTGATTTCACCG
1 AAAATTACCATTTTA-CCCCTGAATCTTCCAAAATTCCATTTTTAACCCTGATTTCACCG
* * *
36451753 AAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCTAATTTCTCCA
1 AAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCTGATTTCACCG
* * *
36451812 AAAATCACCATTTTACCCCTGAA-CTTTCCAAAATTCCA-TTTTAACCCTGATTTTATC-
1 AAAATTACCATTTTACCCCTGAATC-TTCCAAAATTCCATTTTTAACCCTGATTTCACCG
*
36451869 AAAATTACCATTTTGCCCCTG
1 AAAATTACCATTTTACCCCTG
36451890 GGTATCCAAA
Statistics
Matches: 179, Mismatches: 15, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
57 19 0.11
58 31 0.17
59 78 0.44
60 51 0.28
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCTGATTTCACCG
Found at i:36451880 original size:29 final size:29
Alignment explanation
Indices: 36451630--36451882 Score: 148
Period size: 30 Copynumber: 8.7 Consensus size: 29
36451620 ACCCTGAAAC
* * *
36451630 TTCCAAAAATTACCATTTT-ACCCCGAATC
1 TTCCGAAAATTACCATTTTAACCCTG-ATT
* * *
36451659 TT-CTAAAAAT-CCATTTGTAACCCCGATT
1 TTCCGAAAATTACCATTT-TAACCCTGATT
* * * *
36451687 TCACCGAAAATTACCATTTTACCCCCCGAATC
1 T-TCCGAAAATTACCATTTTA-ACCCTG-ATT
*
36451719 TT-CTAAAATT-CCATTTTTAACCCTGATT
1 TTCCGAAAATTACCA-TTTTAACCCTGATT
* * *
36451747 TCACCGAAAATTACCATTTTACCCCTGAATC
1 T-TCCGAAAATTACCATTTTAACCCTG-ATT
*
36451778 TTCC-AAAATT-CCATTTTTAACCCTAATT
1 TTCCGAAAATTACCA-TTTTAACCCTGATT
* * * *
36451806 TCTCCAAAAATCACCATTTTACCCCTGAACT
1 T-TCCGAAAATTACCATTTTAACCCTG-ATT
36451837 TTCC-AAAATT-CCATTTTAACCCTGATT
1 TTCCGAAAATTACCATTTTAACCCTGATT
*
36451864 TTATC-AAAATTACCATTTT
1 TT-CCGAAAATTACCATTTT
36451883 GCCCCTGGGT
Statistics
Matches: 176, Mismatches: 29, Indels: 38
0.72 0.12 0.16
Matches are distributed among these distances:
27 10 0.06
28 39 0.22
29 45 0.26
30 56 0.32
31 23 0.13
32 3 0.02
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.36
Consensus pattern (29 bp):
TTCCGAAAATTACCATTTTAACCCTGATT
Found at i:36460056 original size:15 final size:15
Alignment explanation
Indices: 36460036--36460087 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
36460026 TTTAATTAAT
36460036 TAAAATATATTATAA
1 TAAAATATATTATAA
36460051 TAAAATA-ATTGATAA
1 TAAAATATATT-ATAA
*
36460066 T--AATATGATAATAA
1 TAAAATAT-ATTATAA
36460080 TAAAATAT
1 TAAAATAT
36460088 TTCACCAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.13
14 8 0.26
15 14 0.45
16 5 0.16
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (15 bp):
TAAAATATATTATAA
Found at i:36462994 original size:37 final size:37
Alignment explanation
Indices: 36462918--36462995 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
36462908 TTCCTGCGAT
* ** **
36462918 GACAGTTTTGGGTGCAATATGGAAGTGCTCATGTGGC
1 GACAGTTTTGGGCGCAATATAAAAGTGCTCATGCAGC
* *
36462955 GACAGTTTTGGGCGCAATCTAAAAGTTCTCATGCAGC
1 GACAGTTTTGGGCGCAATATAAAAGTGCTCATGCAGC
36462992 GACA
1 GACA
36462996 TTAGTAGTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
GACAGTTTTGGGCGCAATATAAAAGTGCTCATGCAGC
Found at i:36467403 original size:37 final size:38
Alignment explanation
Indices: 36467362--36467449 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 38
36467352 GTATATGTTC
36467362 ATGCAGCGACA-TTCCT-GAGTGCAA-TT-AAAGAATACTT
1 ATGCAGCGACAGTT-CTAGA-TGCAATTTGAAA-AATACTT
* *
36467399 ATGCAGCGATAGTTCTAGATGCAATTTGAAAAATATTT
1 ATGCAGCGACAGTTCTAGATGCAATTTGAAAAATACTT
36467437 ATGCAGCGACAGT
1 ATGCAGCGACAGT
36467450 CTTAAGTGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
37 17 0.39
38 24 0.55
39 3 0.07
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (38 bp):
ATGCAGCGACAGTTCTAGATGCAATTTGAAAAATACTT
Found at i:36472586 original size:24 final size:22
Alignment explanation
Indices: 36472559--36472607 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
36472549 TAAAGTAAAA
*
36472559 TAAAAATGATGATAATTATATATT
1 TAAAAATAATGATAATT-TA-ATT
*
36472583 TAAAAATAATTATAATTTAATT
1 TAAAAATAATGATAATTTAATT
36472605 TAA
1 TAA
36472608 TATTATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 6 0.26
23 2 0.09
24 15 0.65
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
TAAAAATAATGATAATTTAATT
Found at i:36474775 original size:16 final size:16
Alignment explanation
Indices: 36474754--36474785 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36474744 TTCATTATTT
36474754 TCAATTAATAAAATAA
1 TCAATTAATAAAATAA
*
36474770 TCAATTAATTAAATAA
1 TCAATTAATAAAATAA
36474786 AACTAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (16 bp):
TCAATTAATAAAATAA
Found at i:36475044 original size:31 final size:31
Alignment explanation
Indices: 36475006--36475064 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
36474996 GGGCATCAAA
36475006 AAGTTTAAGTACCAAATTAAAAAAATATATC
1 AAGTTTAAGTACCAAATTAAAAAAATATATC
*
36475037 AAGTTTAAGTATCAAATTAAAAAAATAT
1 AAGTTTAAGTACCAAATTAAAAAAATAT
36475065 CAAATTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAAAAAAATATATC
Found at i:36475090 original size:31 final size:30
Alignment explanation
Indices: 36475009--36475093 Score: 102
Period size: 31 Copynumber: 2.8 Consensus size: 30
36474999 CATCAAAAAG
* *
36475009 TTTAAGTACCAAATTAAAAAAATATATCAAG
1 TTTAAGTATCAAATTAAAAAAA-ATATCAAA
36475040 TTTAAGTATCAAATT-AAAAAAATATCAAA
1 TTTAAGTATCAAATTAAAAAAAATATCAAA
*
36475069 TTTATA-TATTAAATTGAAAAAAAAT
1 TTTA-AGTATCAAATT-AAAAAAAAT
36475094 TAATAATCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 19 0.40
30 7 0.15
31 22 0.46
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (30 bp):
TTTAAGTATCAAATTAAAAAAAATATCAAA
Found at i:36488122 original size:15 final size:16
Alignment explanation
Indices: 36488104--36488137 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
36488094 GAATGAATTG
36488104 TAATTATAAAA-CTAA
1 TAATTATAAAATCTAA
*
36488119 TAATTTTAAAATCTAA
1 TAATTATAAAATCTAA
36488135 TAA
1 TAA
36488138 AAGAATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATTATAAAATCTAA
Found at i:36492489 original size:30 final size:30
Alignment explanation
Indices: 36492441--36492508 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 30
36492431 ACGTGTAATG
*
36492441 AAAACTCGTCTAACTAGACACGCTTTTCAA
1 AAAACTCGTCCAACTAGACACGCTTTTCAA
* * ** *
36492471 AAAACTTGTCCAATTAGACGTGCTTTTCAG
1 AAAACTCGTCCAACTAGACACGCTTTTCAA
*
36492501 AAAGCTCG
1 AAAACTCG
36492509 CCTAGCTGGA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (30 bp):
AAAACTCGTCCAACTAGACACGCTTTTCAA
Found at i:36495546 original size:24 final size:25
Alignment explanation
Indices: 36495492--36495553 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
36495482 GAATTAATCG
* *
36495492 AATATTTTTTCTTTTTACTATTTGT
1 AATATTTTTTCTTTTTACTAATTCT
* *
36495517 TA-ATTTTTT-TTTTTGCTAATTCT
1 AATATTTTTTCTTTTTACTAATTCT
36495540 AATATTTATTTCTT
1 AATATTT-TTTCTT
36495554 GAGTTAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 12 0.41
24 11 0.38
25 4 0.14
26 2 0.07
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (25 bp):
AATATTTTTTCTTTTTACTAATTCT
Found at i:36496088 original size:13 final size:12
Alignment explanation
Indices: 36496070--36496113 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
36496060 TATATAGATT
36496070 AAACAAATAAAAA
1 AAACAAA-AAAAA
*
36496083 AAACAAAACAAA
1 AAACAAAAAAAA
36496095 AAA-AAAAAAAA
1 AAACAAAAAAAA
*
36496106 AAAGAAAA
1 AAACAAAA
36496114 GAAAGGCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 10 0.36
12 11 0.39
13 7 0.25
ACGTcount: A:0.89, C:0.07, G:0.02, T:0.02
Consensus pattern (12 bp):
AAACAAAAAAAA
Found at i:36496091 original size:18 final size:16
Alignment explanation
Indices: 36496070--36496106 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
36496060 TATATAGATT
36496070 AAACAAATAAAAAAAACA
1 AAACAAA-AAAAAAAA-A
36496088 AAACAAAAAAAAAAAA
1 AAACAAAAAAAAAAAA
36496104 AAA
1 AAA
36496107 AAGAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 8 0.42
18 7 0.37
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (16 bp):
AAACAAAAAAAAAAAA
Found at i:36496108 original size:18 final size:18
Alignment explanation
Indices: 36496070--36496113 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
36496060 TATATAGATT
* *
36496070 AAACAAATAAAAAAAACA
1 AAACAAAAAAAAAAAAAA
36496088 AAACAAAAAAAAAAAAAA
1 AAACAAAAAAAAAAAAAA
*
36496106 AAAGAAAA
1 AAACAAAA
36496114 GAAAGGCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.89, C:0.07, G:0.02, T:0.02
Consensus pattern (18 bp):
AAACAAAAAAAAAAAAAA
Found at i:36497214 original size:132 final size:132
Alignment explanation
Indices: 36496977--36497237 Score: 407
Period size: 132 Copynumber: 2.0 Consensus size: 132
36496967 ATTTTGAAAT
* * *
36496977 TTACAGGTTATATGGGTATTAGTTTTAGATGTCCTACCGATGGCTGAGATCCGAGATATGTTGCG
1 TTACAGGTTATATGAGTACTAGTCTTAGATGTCCTACCGATGGCTGAGATCCGAGATATGTTGCG
*
36497042 GATTCTCCACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCTTGACCCACAGCTCGTGTGAA
66 GATTCTCCACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCATGACCCACAGCTCGTGTGAA
36497107 CA
131 CA
* * * *
36497109 TTACATGTTATATGAGTGCTAGTCTTAGATGTCTTACCGATGGTTGAGATCC-AGCATATGTTGC
1 TTACAGGTTATATGAGTACTAGTCTTAGATGTCCTACCGATGGCTGAGATCCGAG-ATATGTTGC
* * *
36497173 GGATTCTCCATAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCATGACTCACAGCTCGTGTGA
65 GGATTCTCCACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCATGACCCACAGCTCGTGTGA
36497238 GCAGACCCAT
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
131 2 0.02
132 115 0.98
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (132 bp):
TTACAGGTTATATGAGTACTAGTCTTAGATGTCCTACCGATGGCTGAGATCCGAGATATGTTGCG
GATTCTCCACAGCTCATGTGAGCAGCATCGTGTAGCCTAACATCATGACCCACAGCTCGTGTGAA
CA
Found at i:36499897 original size:13 final size:13
Alignment explanation
Indices: 36499876--36499911 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
36499866 AACCAAACTT
*
36499876 GACCCGTTGACTC
1 GACCCGTTGACCC
*
36499889 GACCTGTTGACCC
1 GACCCGTTGACCC
36499902 GACCCGTTGA
1 GACCCGTTGA
36499912 TCGTTGATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.36, G:0.25, T:0.22
Consensus pattern (13 bp):
GACCCGTTGACCC
Found at i:36501277 original size:18 final size:18
Alignment explanation
Indices: 36501256--36501290 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
36501246 ATAAATTATT
36501256 AAAA-ATTTATAAAAATAA
1 AAAATATTTA-AAAAATAA
36501274 AAAATATTTAAAAAATA
1 AAAATATTTAAAAAATA
36501291 GAGAAAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAATATTTAAAAAATAA
Found at i:36502035 original size:14 final size:15
Alignment explanation
Indices: 36502016--36502045 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36502006 TGTTAAATAA
36502016 ATTG-AAAATTAAGT
1 ATTGAAAAATTAAGT
36502030 ATTGAAAAATTAAGT
1 ATTGAAAAATTAAGT
36502045 A
1 A
36502046 CTAAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (15 bp):
ATTGAAAAATTAAGT
Found at i:36505467 original size:23 final size:24
Alignment explanation
Indices: 36505432--36505478 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
36505422 TAGACTTGCT
36505432 AATATTATTTTTAATTT-TTTTAA
1 AATATTATTTTTAATTTATTTTAA
*
36505455 AATATTCA-TTTTATTTTATTTTAA
1 AATATT-ATTTTTAATTTATTTTAA
36505479 TATTTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
AATATTATTTTTAATTTATTTTAA
Found at i:36510726 original size:24 final size:24
Alignment explanation
Indices: 36510693--36510739 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36510683 AGAAATAATC
* *
36510693 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTATTTATTTG
36510717 TTTCAATTAAACTCTATTTATTT
1 TTTCAATTAAACTCTATTTATTT
36510740 ATTTGAGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTATTTATTTG
Found at i:36510752 original size:24 final size:24
Alignment explanation
Indices: 36510701--36510755 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
36510691 TCTTTCAGTT
* * *
36510701 AAACTCTGTTTATTTGTTTCAATT
1 AAACTCTATTTATTTATTTCAATC
* *
36510725 AAACTCTATTTATTTATTTGAGTC
1 AAACTCTATTTATTTATTTCAATC
36510749 AAACTCT
1 AAACTCT
36510756 TATTAGTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (24 bp):
AAACTCTATTTATTTATTTCAATC
Found at i:36516967 original size:24 final size:24
Alignment explanation
Indices: 36516920--36516967 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36516910 AATAAGAGAT
**
36516920 ATTGTAAATTATAAAAATTCAAAA
1 ATTGTAAATTATAAAAATAAAAAA
36516944 ATTG-AAATATATAAAAATAAAAAA
1 ATTGTAAAT-TATAAAAATAAAAAA
36516968 TAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (24 bp):
ATTGTAAATTATAAAAATAAAAAA
Found at i:36516972 original size:5 final size:6
Alignment explanation
Indices: 36516954--36516983 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
36516944 ATTGAAATAT
36516954 ATAAAA ATAAAAA ATAAAA ATAAAA ATAAA
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAA
36516984 GTTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:36516974 original size:23 final size:24
Alignment explanation
Indices: 36516925--36516975 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
36516915 GAGATATTGT
* **
36516925 AAAT-TATAAAAATTCAAAAATTG
1 AAATATATAAAAATTAAAAAATAA
36516948 AAATATATAAAAA-TAAAAAATAA
1 AAATATATAAAAATTAAAAAATAA
36516971 AAATA
1 AAATA
36516976 AAAATAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (24 bp):
AAATATATAAAAATTAAAAAATAA
Found at i:36517089 original size:23 final size:23
Alignment explanation
Indices: 36517063--36517112 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
36517053 TTTTTTTTTA
* *
36517063 AAAATCTAAAAAT-TATAACAAAT
1 AAAAT-TAAAAATATACAAAAAAT
36517086 AAAATTAAAAATATACAAAAAAT
1 AAAATTAAAAATATACAAAAAAT
36517109 AAAA
1 AAAA
36517113 AATGGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (23 bp):
AAAATTAAAAATATACAAAAAAT
Found at i:36524993 original size:49 final size:49
Alignment explanation
Indices: 36524813--36525223 Score: 305
Period size: 49 Copynumber: 8.3 Consensus size: 49
36524803 GGCTATAATG
* * * * *
36524813 TCTTCGCGGTACTAGGTTCACCGTTGCGACTTAAACTTTTCCCTTCAAA
1 TCTTCGTGGTACTAGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
** * * * *
36524862 TCTTTATGGTACTGGATTCGCCGCTGCGGCTTAAATCC-TTCCCTTCATG
1 TCTTCGTGGTACTAGATTCGCCGTTGCGACTTAAA-CCTTTCCCTTCATA
* * * * * * ** *
36524911 TC-CCTGAGGTA-TAAGGTTCGTCATCGCGACTTAAACCTTTCCCTTTGTG
1 TCTTC-GTGGTACT-AGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
* * *
36524960 TCTTCGTGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT-
1 TCTTCGTGGTACTAGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
* * * *
36525008 GCTTCCGTGATGTA--AGGTTCACCATTGCGACTTAAACCTTTCCCTTCATA
1 TCTT-CGTG--GTACTAGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
* * * *
36525058 TCTTCGCGGTACTGGATTCGCCGTTGC-AGCTTAAATCTTTCCCTTCGTA
1 TCTTCGTGGTACTAGATTCGCCGTTGCGA-CTTAAACCTTTCCCTTCATA
* * * * **
36525107 TCTTCATGGTACTGGATTCGTCGTTGCGACTTAAATCTTTCCCACCATA
1 TCTTCGTGGTACTAGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
* ** * *
36525156 TCTTCGTGGTACTGGATTCCGCCGTCACGACTTAGACCTTTCCCTTTAGTA
1 TCTTCGTGGTACTAGATT-CGCCGTTGCGACTTAAACCTTTCCCTTCA-TA
*
36525207 TCTTTGTGGTACTAGAT
1 TCTTCGTGGTACTAGAT
36525224 CTGCCATTAC
Statistics
Matches: 281, Mismatches: 65, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
47 3 0.01
48 7 0.02
49 223 0.79
50 28 0.10
51 20 0.07
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.36
Consensus pattern (49 bp):
TCTTCGTGGTACTAGATTCGCCGTTGCGACTTAAACCTTTCCCTTCATA
Found at i:36525134 original size:98 final size:96
Alignment explanation
Indices: 36524836--36525180 Score: 345
Period size: 98 Copynumber: 3.5 Consensus size: 96
36524826 AGGTTCACCG
* * ** * *
36524836 TTGCGACTTAAACTTTTCCCTTCAAATCTTTATGGTACTGGATTCGCCGCTGCGGCTTAAATCCT
1 TTGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* * *
36524901 TCCCTTCATGTCCCTGA-GGTATAAGGTTCGTCA
66 TCCCTTC-TATCCTTCATGGTAT--GGTTCGTCA
* ** * * *
36524934 TCGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTAGATTCACCGTTGCGGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* * * **
36524999 TCCCTTC-ATGCTTCCGTGATGTAAGGTTCACCA
66 TCCCTTCTATCCTT-CATG--GTATGGTTCGTCA
* *
36525032 TTGCGACTTAAACCTTTCCCTTCATATCTTCGCGGTACTGGATTCGCCGTTGCAGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
*
36525097 TCCCTTCGTAT-CTTCATGGTACTGGATTCGTCG
66 TCCCTTC-TATCCTTCATGGTA-TGG-TTCGTCA
* **
36525130 TTGCGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGGATTCCGCCGT
1 TTGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACTGGATT-CGCCGT
36525181 CACGACTTAG
Statistics
Matches: 201, Mismatches: 37, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
96 6 0.03
97 2 0.01
98 179 0.89
99 9 0.04
100 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.37
Consensus pattern (96 bp):
TTGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
TCCCTTCTATCCTTCATGGTATGGTTCGTCA
Found at i:36525219 original size:51 final size:51
Alignment explanation
Indices: 36525035--36525400 Score: 227
Period size: 49 Copynumber: 7.3 Consensus size: 51
36525025 TTCACCATTG
* * * * * *
36525035 CGACTTAAACCTTTCCCTTCA-TATCTTCGCGGTACTGGATT-CGCCGTTG
1 CGACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
* * ** * *
36525084 C-AGCTTAAATCTTTCCC-TTCGTATCTTCATGGTACTGGATT-CGTCGTTG
1 CGA-CTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
* *** * *
36525133 CGACTTAAATCTTTCCCACCA-TATCTTCGTGGTACTGGATTCCGCCGTCA
1 CGACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
* * * *
36525183 CGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTAGA-TCTGCCATTA
1 CGACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
* * * * * *
36525233 CGGTCTTCGATCTTTCCCTTCATGT-T-TCTGAGGTACACGG--TCCGCCGTTA
1 C-GACTTAGATCTTTCCCTTTA-GTATCTTTGTGGTAC-TGGATTCCGCCGTTA
* ** * * *
36525283 CGACTTAGATATTTCCCTTTAGTATCTTTACGGTACTGGA-TCCACCATTG
1 CGACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
* * * * *
36525333 CGGTCTTAGATCTTTCCCTTTTGTATCTTTGTGGTACTGGA-TCCGTCATTG
1 C-GACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
*
36525384 CGATCTTAGAACTTTCC
1 CGA-CTTAGATCTTTCC
36525401 TTTCATGTTT
Statistics
Matches: 250, Mismatches: 53, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
48 4 0.02
49 92 0.37
50 63 0.25
51 89 0.36
52 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.38
Consensus pattern (51 bp):
CGACTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTGGATTCCGCCGTTA
Found at i:36525277 original size:100 final size:100
Alignment explanation
Indices: 36525173--36525352 Score: 270
Period size: 100 Copynumber: 1.8 Consensus size: 100
36525163 GGTACTGGAT
* ** **
36525173 TCCGCCGTCACGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTAGATCTGCCATTACGGTC
1 TCCGCCGTCACGACTTAGACATTTCCCTTTAGTATCTTTACGGTACTAGATCCACCATTACGGTC
*
36525238 TTCGATCTTTCCCTTCATGTTTCTGAGGTACACGG
66 TTAGATCTTTCCCTTCATGTTTCTGAGGTACACGG
* * * *
36525273 TCCGCCGTTACGACTTAGATATTTCCCTTTAGTATCTTTACGGTACTGGATCCACCATTGCGGTC
1 TCCGCCGTCACGACTTAGACATTTCCCTTTAGTATCTTTACGGTACTAGATCCACCATTACGGTC
36525338 TTAGATCTTTCCCTT
66 TTAGATCTTTCCCTT
36525353 TTGTATCTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.38
Consensus pattern (100 bp):
TCCGCCGTCACGACTTAGACATTTCCCTTTAGTATCTTTACGGTACTAGATCCACCATTACGGTC
TTAGATCTTTCCCTTCATGTTTCTGAGGTACACGG
Found at i:36525284 original size:50 final size:50
Alignment explanation
Indices: 36525221--36525501 Score: 153
Period size: 51 Copynumber: 5.6 Consensus size: 50
36525211 TGTGGTACTA
* *
36525221 GATCTGCCATTACGGTCTTCGATCTTTCCCTTCATGTTTCTGAGGTACACG
1 GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGTTTCTGAGGTAC-CG
* * * * * * *
36525272 G-TCCGCCGTTAC-GACTTAGATATTTCCCTTTA-GTATCTTTACGGTACTG
1 GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGTTTC-TGA-GGTACCG
* * * * * *
36525321 GATCCACCATTGCGGTCTTAGATCTTTCCCTT-TTGTATCTTTGTGGTACTG
1 GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGT-T-TCTGAGGTACCG
* * * * *
36525372 GATCCGTCATTGCGATCTTAGAACTTTCCTTTCATGTTTCTGAGGTACACG
1 GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGTTTCTGAGGTAC-CG
* * * * * * * * * *
36525423 G-CCCGCCGTTGC-GACTTAGACCTTTCCCTT-TTGTATCTTTACGATACTG
1 GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGTTTC-TGA-GGTACCG
* *
36525472 GATCTGCCATTATGGTCTTAGATCTTTCCC
1 GATCCGCCATTACGGTCTTAGATCTTTCCC
36525502 GTTGCATTTC
Statistics
Matches: 170, Mismatches: 47, Indels: 26
0.70 0.19 0.11
Matches are distributed among these distances:
48 9 0.05
49 38 0.22
50 48 0.28
51 70 0.41
52 4 0.02
53 1 0.01
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39
Consensus pattern (50 bp):
GATCCGCCATTACGGTCTTAGATCTTTCCCTTCATGTTTCTGAGGTACCG
Found at i:36525351 original size:151 final size:151
Alignment explanation
Indices: 36525186--36525501 Score: 452
Period size: 151 Copynumber: 2.1 Consensus size: 151
36525176 GCCGTCACGA
* * * * *
36525186 CTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTAGATCTGCCATTACGGTCTTCGATCTTTCCC
1 CTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTAGATCCGCCATTACGATCTTAGAACTTTCCC
* * *
36525251 TTCATGTTTCTGAGGTACACGGTCCGCCGTTACGACTTAGATATTTCCCTTTAGTATCTTTACGG
66 TTCATGTTTCTGAGGTACACGGCCCGCCGTTACGACTTAGACATTTCCCTTTAGTATCTTTACGA
*
36525316 TACTGGATCCACCATTGCGGT
131 TACTGGATCCACCATTACGGT
* * * * *
36525337 CTTAGATCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGTCATTGCGATCTTAGAACTTTCCT
1 CTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTAGATCCGCCATTACGATCTTAGAACTTTCCC
* * *
36525402 TTCATGTTTCTGAGGTACACGGCCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTACGA
66 TTCATGTTTCTGAGGTACACGGCCCGCCGTTACGACTTAGACATTTCCCTTTAGTATCTTTACGA
** *
36525467 TACTGGATCTGCCATTATGGT
131 TACTGGATCCACCATTACGGT
36525488 CTTAGATCTTTCCC
1 CTTAGATCTTTCCC
36525502 GTTGCATTTC
Statistics
Matches: 145, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 145 1.00
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (151 bp):
CTTAGATCTTTCCCTTTAGTATCTTTGTGGTACTAGATCCGCCATTACGATCTTAGAACTTTCCC
TTCATGTTTCTGAGGTACACGGCCCGCCGTTACGACTTAGACATTTCCCTTTAGTATCTTTACGA
TACTGGATCCACCATTACGGT
Found at i:36529421 original size:6 final size:6
Alignment explanation
Indices: 36529412--36529450 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
36529402 TGATCAAAAT
* *
36529412 TGAAAG TGAAAG TGAAAG TGAAAT TGAAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
36529451 TATGAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:36529598 original size:41 final size:40
Alignment explanation
Indices: 36529552--36529651 Score: 100
Period size: 38 Copynumber: 2.5 Consensus size: 40
36529542 TATACCTTGA
* *
36529552 GTCGATGAGACACTAGGTGTCATTATTTTACTTCGGA-TAG
1 GTCGATGAGACACTAGGTGTCATCACTTTACTTC-GACTAG
* **
36529592 ATTCGATGAGGTACT-GG-GT-ATCACTTTACTTCGACTAG
1 -GTCGATGAGACACTAGGTGTCATCACTTTACTTCGACTAG
*
36529630 GCCGATGAGACACTAGGTGTCA
1 GTCGATGAGACACTAGGTGTCA
36529652 CTTTATTGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
37 12 0.26
38 16 0.35
39 4 0.09
40 3 0.07
41 11 0.24
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
GTCGATGAGACACTAGGTGTCATCACTTTACTTCGACTAG
Found at i:36529675 original size:40 final size:39
Alignment explanation
Indices: 36529554--36529688 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 39
36529544 TACCTTGAGT
* ** *
36529554 CGATGAGACACTAGGTGTCA-TTATTTTACTTCGGATAGATT
1 CGATGAGACACTAGGTGTCACTT-TATT-CTTC-GATCTATC
** * * *
36529595 CGATGAGGTACTGGGTATCACTTTA--CTTCGA-CTAGGC
1 CGATGAGACACTAGGTGTCACTTTATTCTTCGATCTA-TC
36529632 CGATGAGACACTAGGTGTCACTTTATTGCTTCGATCTATC
1 CGATGAGACACTAGGTGTCACTTTATT-CTTCGATCTATC
* *
36529672 CGATGAGGCACTGGGTG
1 CGATGAGACACTAGGTG
36529689 CCATTCTGGT
Statistics
Matches: 72, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
36 1 0.01
37 23 0.32
38 4 0.06
40 22 0.31
41 20 0.28
42 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTAGGTGTCACTTTATTCTTCGATCTATC
Found at i:36542305 original size:90 final size:90
Alignment explanation
Indices: 36542150--36542354 Score: 313
Period size: 90 Copynumber: 2.3 Consensus size: 90
36542140 AGTGCATATT
* * * ** * *
36542150 CTCGACAGCTCATGTGAGCAGAATTGTTTGGGGATAGTTATACAGACATACATCGTACCGGTGGT
1 CTCGATAGCTCGTGTGAGCAGCATTGTTAAGGGACAGTTATACAGACATACATCGTACCGATGGT
*
36542215 TGGGGTACCGCATATGTTGCAAGTC
66 TGAGGTACCGCATATGTTGCAAGTC
36542240 CTCGATAGCTCGTGTGAGCAGCATTGTTAAGGGACAGTTATACAGACATACA-CTGTACCGATGG
1 CTCGATAGCTCGTGTGAGCAGCATTGTTAAGGGACAGTTATACAGACATACATC-GTACCGATGG
*
36542304 TTGAGGTACCGCATATGTTGTAAGTC
65 TTGAGGTACCGCATATGTTGCAAGTC
36542330 CTCGATAGCTCGTGTGAGCAGCATT
1 CTCGATAGCTCGTGTGAGCAGCATT
36542355 AAGTACCGGT
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
89 1 0.01
90 104 0.99
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (90 bp):
CTCGATAGCTCGTGTGAGCAGCATTGTTAAGGGACAGTTATACAGACATACATCGTACCGATGGT
TGAGGTACCGCATATGTTGCAAGTC
Found at i:36544038 original size:24 final size:24
Alignment explanation
Indices: 36543987--36544047 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
36543977 GATTAATAAG
* *
36543987 AGTTTGACTCAAACAAATAAACAA
1 AGTTTAACTGAAACAAATAAACAA
* * *
36544011 AGTTTAATTGAAACAAATAAATAG
1 AGTTTAACTGAAACAAATAAACAA
36544035 AGTTTAACTGAAA
1 AGTTTAACTGAAA
36544048 GATTATTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.52, C:0.10, G:0.11, T:0.26
Consensus pattern (24 bp):
AGTTTAACTGAAACAAATAAACAA
Found at i:36546193 original size:18 final size:18
Alignment explanation
Indices: 36546170--36546208 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
36546160 TTATATTTTA
*
36546170 ATATTTAAAATATAGTTT
1 ATATTTAAAATAAAGTTT
*
36546188 ATATTTAAATTAAAGTTT
1 ATATTTAAAATAAAGTTT
36546206 ATA
1 ATA
36546209 AATAATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
ATATTTAAAATAAAGTTT
Found at i:36547062 original size:26 final size:24
Alignment explanation
Indices: 36547015--36547072 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
36547005 TAAATAATTT
36547015 TTAAAA-TTCAAAACATTATAAAA
1 TTAAAATTTCAAAACATTATAAAA
*
36547038 TTAAAATTTCAAAATATTAATTAAAA
1 TTAAAATTTCAAAACATT-A-TAAAA
*
36547064 TTCAAATTT
1 TTAAAATTT
36547073 TTATTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 6 0.20
24 10 0.33
25 1 0.03
26 13 0.43
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (24 bp):
TTAAAATTTCAAAACATTATAAAA
Found at i:36547097 original size:17 final size:18
Alignment explanation
Indices: 36547075--36547110 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
36547065 TCAAATTTTT
36547075 ATTTTTAAAAA-TATAAA
1 ATTTTTAAAAATTATAAA
36547092 ATTTTTAAAAATTATAAA
1 ATTTTTAAAAATTATAAA
36547110 A
1 A
36547111 AAATATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTTTAAAAATTATAAA
Found at i:36547408 original size:18 final size:18
Alignment explanation
Indices: 36547387--36547422 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36547377 CTTAAATTGA
36547387 GTTAGGATGATAAAATAG
1 GTTAGGATGATAAAATAG
36547405 GTTAGGATGATAAAATAG
1 GTTAGGATGATAAAATAG
36547423 AACTCATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (18 bp):
GTTAGGATGATAAAATAG
Found at i:36551626 original size:18 final size:18
Alignment explanation
Indices: 36551605--36551647 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
36551595 ATAATAATTT
36551605 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
36551623 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
36551641 TTAATTA
1 TTAATTA
36551648 CACCATTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:36559083 original size:10 final size:10
Alignment explanation
Indices: 36559070--36559096 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36559060 TATAAAAAAA
36559070 TTAAAATTTT
1 TTAAAATTTT
36559080 TTAAAATTTT
1 TTAAAATTTT
36559090 TTAAAAT
1 TTAAAAT
36559097 AATAATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTAAAATTTT
Found at i:36561024 original size:309 final size:310
Alignment explanation
Indices: 36560465--36561089 Score: 1198
Period size: 309 Copynumber: 2.0 Consensus size: 310
36560455 ATTGAAGTTG
36560465 GAAATTTGTTAATTTTAGTGTAAAGTTTGCCTTTAGTTTATCAATGACATATATTTCGTTGGCTG
1 GAAATTTGTTAATTTTAGTGTAAAGTTTGCCTTTAGTTTATCAATGACATATATTTCGTTGGCTG
*
36560530 TGTATGGATATGGGGTTTTGGGCATTTTCGGATGTAAAGTGAGGAACTAAAAACTAATGAAAGTT
66 TGTATGGATATGGGGTTTTGGGCATTTTCAGATGTAAAGTGAGGAACTAAAAACTAATGAAAGTT
* *
36560595 GATTTTTTTTTGGAGTTTGAAAGAAATGGAGGATTAGTAGAATTTCTGAAAACAGCATGCTTTTT
131 GATTTTTTTTTGAAGTTTGAAAGAAATGGAGGATTAGTAGAATTTCTGAAAAAAGCATGCTTTTT
36560660 TATTTAATTAATTCATGTCAAATATATGAAAATTTCCTAATTTTAGGTTCTGCTTTATGGGTTGC
196 TATTTAATTAATTCATGTCAAATATATGAAAATTTCCTAATTTTAGGTTCTGCTTTATGGGTTGC
36560725 TATGTTTCTTAGCTCATTTTCTTGTTTTCATGGCC-ATTATTTTTGTGTT
261 TATGTTTCTTAGCTCATTTTCTTGTTTTCATGGCCTATTATTTTTGTGTT
36560774 GAAATTTGTTAATTTTAGTGTAAAGTTTGCCTTTAGTTTATCAATGACATATATTTCGTTGGCTG
1 GAAATTTGTTAATTTTAGTGTAAAGTTTGCCTTTAGTTTATCAATGACATATATTTCGTTGGCTG
36560839 TGTATGGATATGGGGTTTTGGGCATTTTCAGATGTAAAGTGAGGAACTAAAAACTAATGAAAGTT
66 TGTATGGATATGGGGTTTTGGGCATTTTCAGATGTAAAGTGAGGAACTAAAAACTAATGAAAGTT
36560904 GATTTTTTTTTGAAGTTTGAAAGAAATGGAGGATTAGTAGAATTTCTGAAAAAAGCATGCTTTTT
131 GATTTTTTTTTGAAGTTTGAAAGAAATGGAGGATTAGTAGAATTTCTGAAAAAAGCATGCTTTTT
36560969 TATTTAATTAATTCATGTCAAATATATGAAAATTTCCTAATTTTAGGTTCTGCTTTATGGGTTGC
196 TATTTAATTAATTCATGTCAAATATATGAAAATTTCCTAATTTTAGGTTCTGCTTTATGGGTTGC
36561034 TATGTTTCTTAGCTCATTTTCTTGTTTTCATGGCCATTATTATTTTTGTGTT
261 TATGTTTCTTAGCTCATTTTCTTGTTTTCATGGCC--TATTATTTTTGTGTT
36561086 GAAA
1 GAAA
36561090 ATTTTTTGGA
Statistics
Matches: 310, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
309 292 0.94
312 18 0.06
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.44
Consensus pattern (310 bp):
GAAATTTGTTAATTTTAGTGTAAAGTTTGCCTTTAGTTTATCAATGACATATATTTCGTTGGCTG
TGTATGGATATGGGGTTTTGGGCATTTTCAGATGTAAAGTGAGGAACTAAAAACTAATGAAAGTT
GATTTTTTTTTGAAGTTTGAAAGAAATGGAGGATTAGTAGAATTTCTGAAAAAAGCATGCTTTTT
TATTTAATTAATTCATGTCAAATATATGAAAATTTCCTAATTTTAGGTTCTGCTTTATGGGTTGC
TATGTTTCTTAGCTCATTTTCTTGTTTTCATGGCCTATTATTTTTGTGTT
Found at i:36566493 original size:16 final size:17
Alignment explanation
Indices: 36566464--36566497 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
36566454 TATATTTTTT
*
36566464 AAAAATATATAAAAATA
1 AAAAATATAAAAAAATA
36566481 AAAAAT-TAAAAAAATA
1 AAAAATATAAAAAAATA
36566497 A
1 A
36566498 TATGATTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATATAAAAAAATA
Found at i:36569164 original size:30 final size:31
Alignment explanation
Indices: 36569120--36569183 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
36569110 TAATAAAAAT
*
36569120 AAAATTGTACTTTAACTCCGTTAAAAA-TATA
1 AAAATTGTAATTTAA-TCCGTTAAAAATTATA
**
36569151 AAAATT-TAATTTAATCTTTTAAAAATTATA
1 AAAATTGTAATTTAATCCGTTAAAAATTATA
36569181 AAA
1 AAA
36569184 TATAAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 9 0.31
30 14 0.48
31 6 0.21
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (31 bp):
AAAATTGTAATTTAATCCGTTAAAAATTATA
Found at i:36573414 original size:2 final size:2
Alignment explanation
Indices: 36573407--36573439 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
36573397 CTACACCTTT
36573407 TA TA TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36573440 GAATTGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:36573957 original size:27 final size:27
Alignment explanation
Indices: 36573919--36573972 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
36573909 TATTTGTTCT
36573919 ATTTTTTAATAT-TAATTTTATTATAA
1 ATTTTTTAATATCTAATTTTATTATAA
* * *
36573945 ATTTTTATCATATCTATTTTTTTTATAA
1 ATTTTT-TAATATCTAATTTTATTATAA
36573973 TATCTAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 5 0.22
28 12 0.52
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (27 bp):
ATTTTTTAATATCTAATTTTATTATAA
Found at i:36575673 original size:16 final size:16
Alignment explanation
Indices: 36575652--36575683 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36575642 TCTATAGTAT
36575652 TTAATTGTATATATAC
1 TTAATTGTATATATAC
*
36575668 TTAATTTTATATATAC
1 TTAATTGTATATATAC
36575684 ATTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (16 bp):
TTAATTGTATATATAC
Found at i:36577620 original size:16 final size:17
Alignment explanation
Indices: 36577580--36577622 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
36577570 AATTTTTGTG
36577580 ATTTTTAATTATATATT
1 ATTTTTAATTATATATT
*
36577597 AATTTTAATTATGAT-TT
1 ATTTTTAATTAT-ATATT
36577614 -TTTTTAATT
1 ATTTTTAATT
36577623 TTTATAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 8 0.35
17 13 0.57
18 2 0.09
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
ATTTTTAATTATATATT
Found at i:36583965 original size:6 final size:6
Alignment explanation
Indices: 36583956--36583982 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
36583946 TAAGAACCAG
36583956 AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA
36583983 CTATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:36599553 original size:22 final size:22
Alignment explanation
Indices: 36599528--36599585 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
36599518 CGATCTAAGG
36599528 AAAA-AAAAGAAACAGAAGAATTA
1 AAAAGAAAAGAAAC--AAGAATTA
* *
36599551 AAAATAAAAGAAACCAGAATT-
1 AAAAGAAAAGAAACAAGAATTA
36599572 AAAAGAAATAGAAA
1 AAAAGAAA-AGAAA
36599586 ATAGAGGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 7 0.23
22 11 0.35
23 4 0.13
24 9 0.29
ACGTcount: A:0.72, C:0.05, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAGAAAAGAAACAAGAATTA
Found at i:36603559 original size:14 final size:14
Alignment explanation
Indices: 36603540--36603580 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
36603530 TAAAGTTTCT
36603540 TATGATACATGTGA
1 TATGATACATGTGA
36603554 TATGATACATGTGA
1 TATGATACATGTGA
36603568 TATGATACATGTG
1 TATGATACATGTG
36603581 TGGCTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
TATGATACATGTGA
Found at i:36610367 original size:15 final size:15
Alignment explanation
Indices: 36610347--36610390 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36610337 AAATTAAAAC
36610347 AATTAAAAAATAAAT
1 AATTAAAAAATAAAT
** *
36610362 AATTAAAACTTAATT
1 AATTAAAAAATAAAT
*
36610377 AATTAAAAACTAAA
1 AATTAAAAAATAAA
36610391 AATAAAATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
AATTAAAAAATAAAT
Found at i:36611469 original size:11 final size:11
Alignment explanation
Indices: 36611452--36611488 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
36611442 TAATAACAAT
36611452 AAAATAATAGC
1 AAAATAATAGC
*
36611463 AATATAATAGC
1 AAAATAATAGC
*
36611474 AAAATGATAGC
1 AAAATAATAGC
36611485 AAAA
1 AAAA
36611489 CAAAGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:36616897 original size:23 final size:23
Alignment explanation
Indices: 36616853--36616897 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36616843 CTACTCTAAT
36616853 ATAAATATTAAAAAAATGTTAAG
1 ATAAATATTAAAAAAATGTTAAG
*
36616876 ATAACTATATAAAAAAAT-TTAA
1 ATAAATAT-TAAAAAAATGTTAA
36616898 TAAATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAAATATTAAAAAAATGTTAAG
Found at i:36617446 original size:6 final size:6
Alignment explanation
Indices: 36617435--36617460 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
36617425 AGCAGTATGT
36617435 ATGCGG ATGCGG ATGCGG ATGCGG AT
1 ATGCGG ATGCGG ATGCGG ATGCGG AT
36617461 AGCAACCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.15, G:0.46, T:0.19
Consensus pattern (6 bp):
ATGCGG
Found at i:36617670 original size:13 final size:13
Alignment explanation
Indices: 36617652--36617679 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36617642 AAATCCCGTC
36617652 ATTTATTAAAGAA
1 ATTTATTAAAGAA
36617665 ATTTATTAAAGAA
1 ATTTATTAAAGAA
36617678 AT
1 AT
36617680 AAAATAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTATTAAAGAA
Found at i:36618530 original size:31 final size:31
Alignment explanation
Indices: 36618495--36618554 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
36618485 AAAAAAACTT
36618495 AATAGTCCAG-TGACTTAAATAAAAACTTTCG
1 AATAGT-CAGATGACTTAAATAAAAACTTTCG
** *
36618526 AATAGTTTGATGACTTAAATGAAAACTTT
1 AATAGTCAGATGACTTAAATAAAAACTTT
36618555 AAAATTGTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (31 bp):
AATAGTCAGATGACTTAAATAAAAACTTTCG
Found at i:36622970 original size:20 final size:20
Alignment explanation
Indices: 36622915--36622971 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
36622905 ATTTCTTAAT
36622915 ATTA-TTAAATTAAGTAGATA
1 ATTATTTAAATTAA-TAGATA
36622935 ATTACTTTATAA-TAATA-ATTA
1 ATTA-TTTA-AATTAATAGA-TA
36622956 ATTATTTAAATTAATA
1 ATTATTTAAATTAATA
36622972 TTTTTCAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 2 0.06
20 14 0.44
21 8 0.25
22 6 0.19
23 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (20 bp):
ATTATTTAAATTAATAGATA
Found at i:36623827 original size:7 final size:7
Alignment explanation
Indices: 36623815--36623839 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36623805 TTGTCAATCA
36623815 TTAAGAT
1 TTAAGAT
36623822 TTAAGAT
1 TTAAGAT
36623829 TTAAGAT
1 TTAAGAT
36623836 TTAA
1 TTAA
36623840 TTTTAGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
TTAAGAT
Found at i:36629295 original size:6 final size:6
Alignment explanation
Indices: 36629286--36629322 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
36629276 GCGCATTCTT
36629286 GCACAG GCACAG GCACAG GCACAG GCACAG GCACAG G
1 GCACAG GCACAG GCACAG GCACAG GCACAG GCACAG G
36629323 AACAATCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00
Consensus pattern (6 bp):
GCACAG
Found at i:36629332 original size:18 final size:18
Alignment explanation
Indices: 36629292--36629332 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36629282 TCTTGCACAG
* *
36629292 GCACAGGCACAGGCACAG
1 GCACAGGCACAGGAACAA
36629310 GCACAGGCACAGGAACAA
1 GCACAGGCACAGGAACAA
*
36629328 TCACA
1 GCACA
36629333 AAACCCTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.32, G:0.27, T:0.02
Consensus pattern (18 bp):
GCACAGGCACAGGAACAA
Found at i:36650055 original size:17 final size:16
Alignment explanation
Indices: 36650010--36650059 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
36650000 TCACATCAGC
* *
36650010 AAAATATTTTAAACTT
1 AAAAAATTTTAAAATT
*
36650026 AAAAAATAATTAAAATT
1 AAAAAAT-TTTAAAATT
36650043 AAAAAACTTTTAAAATT
1 AAAAAA-TTTTAAAATT
36650060 TTTTTGGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.21
17 21 0.75
18 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAAATTTTAAAATT
Found at i:36661297 original size:21 final size:22
Alignment explanation
Indices: 36661259--36661304 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
36661249 GGTTAGTAGC
*
36661259 TTTTGTTTTTTTTAAAACTAGA
1 TTTTGTTTTCTTTAAAACTAGA
*
36661281 TTTTGTTTTCTTT-AAACTATA
1 TTTTGTTTTCTTTAAAACTAGA
36661302 TTT
1 TTT
36661305 CTATGTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTTGTTTTCTTTAAAACTAGA
Found at i:36663571 original size:29 final size:31
Alignment explanation
Indices: 36663538--36663615 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 31
36663528 AAATTGCAAT
36663538 TTAGCCTCAAAACTTTAATT-AAACT-CAAA
1 TTAGCCTCAAAACTTTAATTGAAACTACAAA
* *
36663567 TTAG-CTCCCAAACTTT-ATTGAAATTACAAA
1 TTAGCCT-CAAAACTTTAATTGAAACTACAAA
*
36663597 TTAGCCAT-AAAATTTTAAT
1 TTAGCC-TCAAAACTTTAAT
36663616 CATCGCTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
28 5 0.13
29 16 0.41
30 14 0.36
31 3 0.08
32 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (31 bp):
TTAGCCTCAAAACTTTAATTGAAACTACAAA
Done.