Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 115 of 193
Found at i:36666831 original size:10 final size:10
Alignment explanation
Indices: 36666811--36666848 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
36666801 GAGCTTCGTC
36666811 GAAAAAG-GA
1 GAAAAAGAGA
36666820 GAAAAAGAGA
1 GAAAAAGAGA
**
36666830 GAAAGGGAGA
1 GAAAAAGAGA
36666840 GAAAAAGAG
1 GAAAAAGAG
36666849 CTAAATGGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (10 bp):
GAAAAAGAGA
Found at i:36671666 original size:38 final size:38
Alignment explanation
Indices: 36671615--36671690 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
36671605 CTTCACTTAT
*
36671615 AACATTGCTTACCCTCTTAGTATCTATTCCTTCTACCC
1 AACATTGCTTACCCTCTTAGTATCTACTCCTTCTACCC
36671653 AACATTGCTTACCCTCTTAGTATCTACTCCTTCTACCC
1 AACATTGCTTACCCTCTTAGTATCTACTCCTTCTACCC
36671691 CACTAGCAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (38 bp):
AACATTGCTTACCCTCTTAGTATCTACTCCTTCTACCC
Found at i:36676114 original size:40 final size:41
Alignment explanation
Indices: 36676037--36676118 Score: 139
Period size: 40 Copynumber: 2.0 Consensus size: 41
36676027 ATGTAAGGTA
36676037 TAAGTTGGCTAAGTTGTACAAAAAAAGGCATGTTCCTAAGT
1 TAAGTTGGCTAAGTTGTACAAAAAAAGGCATGTTCCTAAGT
* *
36676078 TAAGTTGGTTAAGTTGTAC-AGAAAAGGCATGTTCCTAAGT
1 TAAGTTGGCTAAGTTGTACAAAAAAAGGCATGTTCCTAAGT
36676118 T
1 T
36676119 TAAAAAACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 21 0.54
41 18 0.46
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (41 bp):
TAAGTTGGCTAAGTTGTACAAAAAAAGGCATGTTCCTAAGT
Found at i:36678465 original size:2 final size:2
Alignment explanation
Indices: 36678453--36678533 Score: 109
Period size: 2 Copynumber: 43.0 Consensus size: 2
36678443 TCTTACATAC
* *
36678453 AT AT A- AT AT AT AT AT AC AT AT A- AT AT AT AT AT AC AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36678492 AT AT AT AT AT -T AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36678532 AT
1 AT
36678534 TCTGTTACTT
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
1 5 0.07
2 65 0.93
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:36678471 original size:17 final size:17
Alignment explanation
Indices: 36678449--36678533 Score: 129
Period size: 17 Copynumber: 5.1 Consensus size: 17
36678439 TCATTCTTAC
36678449 ATACATATAATATATAT
1 ATACATATAATATATAT
36678466 ATACATATAATATATAT
1 ATACATATAATATATAT
36678483 ATACATATAATATATAT
1 ATACATATAATATATAT
* *
36678500 AT-TATATTATATATAT
1 ATACATATAATATATAT
*
36678516 ATATATAT-ATATATAT
1 ATACATATAATATATAT
36678532 AT
1 AT
36678534 TCTGTTACTT
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
16 24 0.37
17 41 0.63
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (17 bp):
ATACATATAATATATAT
Found at i:36680769 original size:15 final size:15
Alignment explanation
Indices: 36680749--36680780 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36680739 TTCATGCTCT
36680749 CATGGAACCGACAGA
1 CATGGAACCGACAGA
36680764 CATGGAACCGACAGA
1 CATGGAACCGACAGA
36680779 CA
1 CA
36680781 AATTATCCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.25, T:0.06
Consensus pattern (15 bp):
CATGGAACCGACAGA
Found at i:36685294 original size:50 final size:50
Alignment explanation
Indices: 36685031--36685311 Score: 164
Period size: 50 Copynumber: 5.5 Consensus size: 50
36685021 CAATCTACTG
* * * * *
36685031 CAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTA
1 CAACTTCAGGGGTATAAGATTTGCTTTTGTAGCTTTATCTTGCTCCACTA
* * * * *
36685081 CAGCTTCATGGAG-ATAAAGATTTGCTTTCATG-A-CTTTAATC-CGATTCACTA
1 CAACTTCA-GGGGTAT-AAGATTTGCTTT--TGTAGCTTT-ATCTTGCTCCACTA
* * * * *
36685132 CAACTTTAGGGGTATATGATTTGGTTTTGTAGTTTTATCTTGCTCCACTG
1 CAACTTCAGGGGTATAAGATTTGCTTTTGTAGCTTTATCTTGCTCCACTA
* * * * *
36685182 CAGCTTCAAGGAG-ATAAAGATTTGCTTTCATG-A-CTTTAATC-CGATTCACTA
1 CAACTTC-AGGGGTAT-AAGATTTGCTTT--TGTAGCTTT-ATCTTGCTCCACTA
* * * *
36685233 CAACTTTAGGGGTATATGATTTGGTTTTGTAGCTTTATCTTGCTCCACTG
1 CAACTTCAGGGGTATAAGATTTGCTTTTGTAGCTTTATCTTGCTCCACTA
* *
36685283 CAGCTTCAGGGGAGATAAAGATTTGCTTT
1 CAACTTCAGGGG-TAT-AAGATTTGCTTT
36685312 CATGACTCTA
Statistics
Matches: 167, Mismatches: 44, Indels: 38
0.67 0.18 0.15
Matches are distributed among these distances:
48 4 0.02
49 8 0.05
50 71 0.43
51 62 0.37
52 18 0.11
53 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.39
Consensus pattern (50 bp):
CAACTTCAGGGGTATAAGATTTGCTTTTGTAGCTTTATCTTGCTCCACTA
Found at i:36685379 original size:102 final size:101
Alignment explanation
Indices: 36685015--36685406 Score: 543
Period size: 101 Copynumber: 3.9 Consensus size: 101
36685005 TAATGTAGCC
* * * * * *
36685015 TTAATCCAATCTACTGCAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACT
1 TTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTGTAGCTTTATCTTGCTCCACT
* *
36685080 ACAGCTTCATGGAGATAAAGATTTGCTTTCATGACT
66 GCAGCTTCAGGGAGATAAAGATTTGCTTTCATGACT
* * *
36685116 TTAATCCGATTCACTACAACTTTAGGGGTATATGATTTGGTTTTGTAGTTTTATCTTGCTCCACT
1 TTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTGTAGCTTTATCTTGCTCCACT
*
36685181 GCAGCTTCAAGGAGATAAAGATTTGCTTTCATGACT
66 GCAGCTTCAGGGAGATAAAGATTTGCTTTCATGACT
* *
36685217 TTAATCCGATTCACTACAACTTTAGGGGTATATGATTTGGTTTTGTAGCTTTATCTTGCTCCACT
1 TTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTGTAGCTTTATCTTGCTCCACT
36685282 GCAGCTTCAGGGGAGATAAAGATTTGCTTTCATGACT
66 GCAGCTTCA-GGGAGATAAAGATTTGCTTTCATGACT
* ** * * * * *
36685319 CTAATCCGATCCACTGTAACTTTAGGGGTAT-TGGATTTGATTTTGTTGCTTCATCCTGCTCTAA
1 TTAATCCGATCCACTACAACTTTAGGGGTATAT-GATTTGATTTTGTAGCTTTATCTTGCTCCAC
* *
36685383 TGCAACTTCAGAGAGATAAAGATT
65 TGCAGCTTCAGGGAGATAAAGATT
36685407 CGCCATCGTA
Statistics
Matches: 264, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
101 177 0.67
102 87 0.33
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (101 bp):
TTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTGTAGCTTTATCTTGCTCCACT
GCAGCTTCAGGGAGATAAAGATTTGCTTTCATGACT
Found at i:36685401 original size:203 final size:202
Alignment explanation
Indices: 36685031--36685406 Score: 549
Period size: 203 Copynumber: 1.9 Consensus size: 202
36685021 CAATCTACTG
*
36685031 CAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTACAGCTTCATGGAGAT
1 CAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTACAGCTTCAGGGAGAT
* * *
36685096 AAAGATTTGCTTTCATGACTTTAATCCGATTCACTACAACTTTAGGGGTATATGATTTGGTTTTG
66 AAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTG
* * * * *
36685161 TAGTTTTATCTTGCTCCACTGCAGCTTCAAGGAGATAAAGATTTGCTTTCATGACTTTAATCCGA
131 TAGCTTCATCCTGCTCCAATGCAACTTCAAGGAGATAAAGATTTGCTTTCATGACTTTAATCCGA
36685226 TTCACTA
196 TTCACTA
* * * * *
36685233 CAACTTTAGGGGTATATGATTTGGTTTTGTAGCTTTATCTTGCTCCACTGCAGCTTCAGGGGAGA
1 CAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTACAGCTTCA-GGGAGA
**
36685298 TAAAGATTTGCTTTCATGACTCTAATCCGATCCACTGTAACTTTAGGGGTAT-TGGATTTGATTT
65 TAAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTATAT-GATTTGATTT
* *
36685362 TGTTGCTTCATCCTGCTCTAATGCAACTTC-AGAGAGATAAAGATT
129 TGTAGCTTCATCCTGCTCCAATGCAACTTCAAG-GAGATAAAGATT
36685407 CGCCATCGTA
Statistics
Matches: 153, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
202 56 0.37
203 97 0.63
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (202 bp):
CAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTACAGCTTCAGGGAGAT
AAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTATATGATTTGATTTTG
TAGCTTCATCCTGCTCCAATGCAACTTCAAGGAGATAAAGATTTGCTTTCATGACTTTAATCCGA
TTCACTA
Found at i:36685459 original size:203 final size:202
Alignment explanation
Indices: 36685017--36685462 Score: 547
Period size: 203 Copynumber: 2.2 Consensus size: 202
36685007 ATGTAGCCTT
* * * * *
36685017 AATCCAATCTACTGCAACTTTAGGGATATAGGATTTGATGTTGTAGCTTTATCTTGCTCCACTAC
1 AATCCGATCCACTACAACTTTAGGGATATAGGATTTGGTTTTGTAGCTTTATCTTGCTCCACTAC
* * *
36685082 AGCTTCATGGAGATAAAGATTTGCTTTCATGACTTTAATCCGATTCACTACAACTTTAGGGGTAT
66 AGCTTCAGGGAGATAAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTAT
* * * * * * * **
36685147 ATGATTTGGTTTTGTAGTTTTATCTTGCTCCACTGCAGCTTCAAGGAGATAAAGATTTGCTTTCA
131 ATGATTTGATTTTGTAGCTTCATCCTGCTCCAATGCAACTTCAAGGAGATAAAGATTCGCCATCA
*
36685212 TGACTTT
196 TGACTTC
* * * *
36685219 AATCCGATTCACTACAACTTTAGGGGTATATGATTTGGTTTTGTAGCTTTATCTTGCTCCACTGC
1 AATCCGATCCACTACAACTTTAGGGATATAGGATTTGGTTTTGTAGCTTTATCTTGCTCCACTAC
**
36685284 AGCTTCAGGGGAGATAAAGATTTGCTTTCATGACTCTAATCCGATCCACTGTAACTTTAGGGGTA
66 AGCTTCA-GGGAGATAAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTA
* *
36685349 T-TGGATTTGATTTTGTTGCTTCATCCTGCTCTAATGCAACTTC-AGAGAGATAAAGATTCGCCA
130 TAT-GATTTGATTTTGTAGCTTCATCCTGCTCCAATGCAACTTCAAG-GAGATAAAGATTCGCCA
*
36685412 TCGT-AGCTTC
193 TCATGA-CTTC
* * ** *
36685422 AATCCGGTCCATTGTAACTTCAGGGATATAGGATTTGGTTT
1 AATCCGATCCACTACAACTTTAGGGATATAGGATTTGGTTT
36685463 CGTAACTTCA
Statistics
Matches: 205, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
202 67 0.33
203 138 0.67
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (202 bp):
AATCCGATCCACTACAACTTTAGGGATATAGGATTTGGTTTTGTAGCTTTATCTTGCTCCACTAC
AGCTTCAGGGAGATAAAGATTTGCTTTCATGACTCTAATCCGATCCACTACAACTTTAGGGGTAT
ATGATTTGATTTTGTAGCTTCATCCTGCTCCAATGCAACTTCAAGGAGATAAAGATTCGCCATCA
TGACTTC
Found at i:36685619 original size:50 final size:50
Alignment explanation
Indices: 36685525--36685624 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
36685515 TGTGAATTTT
* *** *
36685525 AATCCGCCCCTTTACAACTTTAGGGGTATAGGATTTGCTTTTGTAGCTTC
1 AATCCGCCCCTTTACAACTTTAGGGGTATAAGATTTGAGGTTGTAACTTC
*
36685575 AATCTGCCCCTTTATC-ACTTTAGGGGTATAAGATTTGAGGTTGTAACTTC
1 AATCCGCCCCTTTA-CAACTTTAGGGGTATAAGATTTGAGGTTGTAACTTC
36685625 GCTCCATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 42 0.98
51 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (50 bp):
AATCCGCCCCTTTACAACTTTAGGGGTATAAGATTTGAGGTTGTAACTTC
Found at i:36686691 original size:51 final size:49
Alignment explanation
Indices: 36686631--36686749 Score: 202
Period size: 49 Copynumber: 2.4 Consensus size: 49
36686621 GGCTTCGAGA
*
36686631 TGCCCTTTGCGAGTTTTCATCTCGACCCTTCCCTTTTTTTTTGGTTTGAGT
1 TGCCCTTTGCGGGTTTTCATCTCGACCCTTCCC--TTTTTTTGGTTTGAGT
36686682 TGCCCTTTGCGGGTTTTCATCTCGACCCTTCCCTTTTTTTGGTTTGAGT
1 TGCCCTTTGCGGGTTTTCATCTCGACCCTTCCCTTTTTTTGGTTTGAGT
*
36686731 TACCCTTTGCGGGTTTTCA
1 TGCCCTTTGCGGGTTTTCA
36686750 ACTCAAACCT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
49 34 0.52
51 32 0.48
ACGTcount: A:0.08, C:0.26, G:0.19, T:0.47
Consensus pattern (49 bp):
TGCCCTTTGCGGGTTTTCATCTCGACCCTTCCCTTTTTTTGGTTTGAGT
Found at i:36686762 original size:44 final size:46
Alignment explanation
Indices: 36686666--36686763 Score: 119
Period size: 49 Copynumber: 2.1 Consensus size: 46
36686656 CCCTTCCCTT
* * **
36686666 TTTTTTTGGTTTGAGTTGCCCTTTGCGGGTTTTCATCTCGACCCTTCCC
1 TTTTTTTGGTTTGAGTTACCCTTTGCGGGTTTTCAACTCGA--C-AACC
36686715 TTTTTTTGGTTTGAGTTACCCTTTGCGGGTTTTCAACTC-A-AACC
1 TTTTTTTGGTTTGAGTTACCCTTTGCGGGTTTTCAACTCGACAACC
36686759 TTTTT
1 TTTTT
36686764 CTCCCCCTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
44 7 0.16
48 1 0.02
49 37 0.82
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.49
Consensus pattern (46 bp):
TTTTTTTGGTTTGAGTTACCCTTTGCGGGTTTTCAACTCGACAACC
Found at i:36687340 original size:93 final size:92
Alignment explanation
Indices: 36687164--36687349 Score: 345
Period size: 93 Copynumber: 2.0 Consensus size: 92
36687154 ATTTAATGGG
* *
36687164 TAAGATTGCCTCCATTCCATATACTAATGAGAAATGTGTTGCCTAGTAGAAGTTCTGACAGACGT
1 TAAGATTGCCTCCATTCCATATACTAATGAGAAATGTGTTCCCCAGTAGAAGTTCTGACAGACGT
36687229 TCGATAAGTGTAAAGAGCAAATGGTAA
66 TCGATAAGTGTAAAGAGCAAATGGTAA
36687256 TAAGATTGCCTCCATTCCATATACTAATGAGAAATGTGTTACCCCAGTAGAAGTTCTGACAGACG
1 TAAGATTGCCTCCATTCCATATACTAATGAGAAATGTGTT-CCCCAGTAGAAGTTCTGACAGACG
36687321 TTCGATAAGTGTAAAGAGCAAATGGTAA
65 TTCGATAAGTGTAAAGAGCAAATGGTAA
36687349 T
1 T
36687350 TTCTCATGCC
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
92 40 0.44
93 51 0.56
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (92 bp):
TAAGATTGCCTCCATTCCATATACTAATGAGAAATGTGTTCCCCAGTAGAAGTTCTGACAGACGT
TCGATAAGTGTAAAGAGCAAATGGTAA
Found at i:36695305 original size:29 final size:29
Alignment explanation
Indices: 36695100--36695461 Score: 309
Period size: 30 Copynumber: 12.2 Consensus size: 29
36695090 TCAAAACATA
* * * *
36695100 ATTTTAGAAAAGTTTAAGGGTAAAAATATA
1 ATTTTAGGAAAGTTT-AGGGTTAAAATGTG
* *
36695130 ATTATGGGAAAGTTTAGAGGTTAAAATGTG
1 ATTTTAGGAAAGTTTAG-GGTTAAAATGTG
* *
36695160 ATTTT-GGAAAGGTTTGGGGTTAAAATGTA
1 ATTTTAGGAAA-GTTTAGGGTTAAAATGTG
* *
36695189 ATTTTAGGAAAGTTTGGGGGGTTAAAATATG
1 ATTTTAGGAAAGTTT--AGGGTTAAAATGTG
* * * *
36695220 TTTTTAGGAAAG-TTAAGGTCAAAATGTA
1 ATTTTAGGAAAGTTTAGGGTTAAAATGTG
36695248 ATTTT-GGAAAGGTTTAAGGGTTAAAATGTG
1 ATTTTAGGAAA-GTTT-AGGGTTAAAATGTG
*
36695278 ATTTTAGAAAAG-TTAGGGATTAAAATGTG
1 ATTTTAGGAAAGTTTAGGG-TTAAAATGTG
*
36695307 ATTTTAGGAAAGTTTTGAGGTTAAAATGTG
1 ATTTTAGGAAAGTTTAG-GGTTAAAATGTG
* * *
36695337 ATTTTGGGAAAGTTTAGGATCAAAATGTG
1 ATTTTAGGAAAGTTTAGGGTTAAAATGTG
* **
36695366 ATTTGAGGAAAGCTTGGGGGGTTAAAATGTG
1 ATTTTAGGAAAG-TT-TAGGGTTAAAATGTG
* * * * *
36695397 ATTTTTGAAAAGTTTGAAGGTCAAAATATG
1 ATTTTAGGAAAGTTT-AGGGTTAAAATGTG
* * *
36695427 ATTTTGGGAAAGTTCGAGAGTTAAAATGTG
1 ATTTTAGGAAAGTT-TAGGGTTAAAATGTG
36695457 ATTTT
1 ATTTT
36695462 TAAAGAAAAC
Statistics
Matches: 267, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.02
28 18 0.07
29 72 0.27
30 123 0.46
31 49 0.18
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.36
Consensus pattern (29 bp):
ATTTTAGGAAAGTTTAGGGTTAAAATGTG
Found at i:36695462 original size:60 final size:60
Alignment explanation
Indices: 36695100--36695462 Score: 323
Period size: 59 Copynumber: 6.1 Consensus size: 60
36695090 TCAAAACATA
* * * * *
36695100 ATTTTAGAAAAGTTTAAGGGTAAAAATATAATTATGGGAAAGTTTAGA-GGTTAAAATGTG
1 ATTTTTGAAAAGTTTAA-GGTCAAAATGTAATTTTGGGAAAGTTTGGAGGGTTAAAATGTG
* * ** * * * *
36695160 ATTTTGGAAAGGTTTGGGGTTAAAATGTAATTTTAGGAAAGTTTGGGGGGTTAAAATATG
1 ATTTTTGAAAAGTTTAAGGTCAAAATGTAATTTTGGGAAAGTTTGGAGGGTTAAAATGTG
* *
36695220 -TTTTTAGGAAAG-TTAAGGTCAAAATGTAATTTT-GGAAAGGTTT-AAGGGTTAAAATGTG
1 ATTTTT-GAAAAGTTTAAGGTCAAAATGTAATTTTGGGAAA-GTTTGGAGGGTTAAAATGTG
* * * * * *
36695278 ATTTTAGAAAAG-TTAGGGATTAAAATGTGATTTTAGGAAAGTTTTGA-GGTTAAAATGTG
1 ATTTTTGAAAAGTTTAAGG-TCAAAATGTAATTTTGGGAAAGTTTGGAGGGTTAAAATGTG
* * * * *
36695337 ATTTTGGGAAAGTTT-AGGATCAAAATGTGA-TTTGAGGAAAGCTTGGGGGGTTAAAATGTG
1 ATTTTTGAAAAGTTTAAGG-TCAAAATGTAATTTTG-GGAAAGTTTGGAGGGTTAAAATGTG
* * * *
36695397 ATTTTTGAAAAGTTTGAAGGTCAAAATATGATTTTGGGAAAG-TTCGAGAGTTAAAATGTG
1 ATTTTTGAAAAGTTT-AAGGTCAAAATGTAATTTTGGGAAAGTTTGGAGGGTTAAAATGTG
36695457 ATTTTT
1 ATTTTT
36695463 AAAGAAAACA
Statistics
Matches: 250, Mismatches: 40, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
58 30 0.12
59 115 0.46
60 82 0.33
61 16 0.06
62 7 0.03
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.36
Consensus pattern (60 bp):
ATTTTTGAAAAGTTTAAGGTCAAAATGTAATTTTGGGAAAGTTTGGAGGGTTAAAATGTG
Found at i:36696707 original size:32 final size:32
Alignment explanation
Indices: 36696666--36696729 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
36696656 TGAATGCACT
36696666 GTCTTATATTGATTTCA-AAAATGCTAGAAAAA
1 GTCTTATATTGATTTCAGAAAA-GCTAGAAAAA
36696698 GTCTTATATTGATTTCAGAAAAGCTAGAAAAA
1 GTCTTATATTGATTTCAGAAAAGCTAGAAAAA
36696730 AGTCCTCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 27 0.87
33 4 0.13
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (32 bp):
GTCTTATATTGATTTCAGAAAAGCTAGAAAAA
Found at i:36698897 original size:193 final size:195
Alignment explanation
Indices: 36698541--36698898 Score: 515
Period size: 193 Copynumber: 1.8 Consensus size: 195
36698531 AACCGACGTA
*
36698541 ATGGCTGAGGTACCGCATATGTTACGAGTCCTCAATAGCTCGTGTGAGCAGCATCGTGAGTCGAG
1 ATGGCTGAGGTACCGCATATGTTACGAGTCCTCAACAGCTCGTGTGAGCAGCATCGTGAGTCGAG
* * * *
36698606 AAATGACAAAAGAATCGAAGAATGGATTACAAGCCCCACAATGGCTGAGATTTATGCATAAGTGT
66 AAAAGACAAAAGAATCCAAGAATGGATTACAAGCCCCACAATGGCTGAGATTTATGCATAAATGC
*
36698671 ATATTCTCGATAGCTCGTGTGAGCAGCATTGTTAGAGAACAATTATATGCATAAATACTGTATCG
131 ATATTCTCGATAGCTCGTATGAGCAGCATTGTTAGAGAACAATTATATGCATAAATACTGTATCG
* ** *
36698736 ATGGTTGAGGTACCGCATATGTTGTGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGAGTCGA-
1 ATGGCTGAGGTACCGCATATGTTACGAGTCCTCAACAGCTCGTGTGAGCAGCATCGTGAGTCGAG
* * * * * * * *
36698800 AAAAGAGATATGAATCCTA-AATGGATTATAGGCCCTACGATGGCTGAGATTTATGC-TCAAATG
66 AAAAGACAAAAGAATCCAAGAATGGATTACAAGCCCCACAATGGCTGAGATTTATGCAT-AAATG
*
36698863 CATATTCTCGATAGCTCGTATGAGTAGCATTGTTAG
130 CATATTCTCGATAGCTCGTATGAGCAGCATTGTTAG
36698899 GGGACAGTTT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
192 1 0.01
193 70 0.49
194 13 0.09
195 59 0.41
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (195 bp):
ATGGCTGAGGTACCGCATATGTTACGAGTCCTCAACAGCTCGTGTGAGCAGCATCGTGAGTCGAG
AAAAGACAAAAGAATCCAAGAATGGATTACAAGCCCCACAATGGCTGAGATTTATGCATAAATGC
ATATTCTCGATAGCTCGTATGAGCAGCATTGTTAGAGAACAATTATATGCATAAATACTGTATCG
Found at i:36707978 original size:15 final size:15
Alignment explanation
Indices: 36707958--36708003 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
36707948 TAAAATAAAT
36707958 AATTAAAATCATGCA
1 AATTAAAATCATGCA
36707973 AATT-AAA-CAT---
1 AATTAAAATCATGCA
36707983 -ATTAAAATCATGCA
1 AATTAAAATCATGCA
36707997 AATTAAA
1 AATTAAA
36708004 TAACTAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
9 3 0.12
10 3 0.12
11 3 0.12
13 3 0.12
14 3 0.12
15 10 0.40
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (15 bp):
AATTAAAATCATGCA
Found at i:36709888 original size:90 final size:90
Alignment explanation
Indices: 36709734--36709905 Score: 224
Period size: 90 Copynumber: 1.9 Consensus size: 90
36709724 GAATTTGATA
* * *
36709734 TTTTTTCTTAATTTGGTATCTAAATTTTTCTGATCCAATTTGGTGTTCAAACTTGACATTTTTTT
1 TTTTTTCTTAAGTTGGTATCTAAATTTTTCTGATCCAATTTGATATTCAAACTTGA-ATTTTTTT
36709799 CCTAATTTAGTACCTAAATTTAGCAC
65 CCTAATTTAGTACCTAAATTTAGCAC
* * **
36709825 TTTTTT-TTAAGTTGGTA-CTTAAATTTTTTTGGGTCCAATTTGATATTTGAACTTG-ATTATTT
1 TTTTTTCTTAAGTTGGTATC-TAAATTTTTCT-GATCCAATTTGATATTCAAACTTGAATT-TTT
36709887 TTCCTAATTTAGTACCTAA
63 TTCCTAATTTAGTACCTAA
36709906 TCTTTTTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
89 4 0.06
90 42 0.59
91 25 0.35
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (90 bp):
TTTTTTCTTAAGTTGGTATCTAAATTTTTCTGATCCAATTTGATATTCAAACTTGAATTTTTTTC
CTAATTTAGTACCTAAATTTAGCAC
Found at i:36710391 original size:57 final size:58
Alignment explanation
Indices: 36710280--36710424 Score: 175
Period size: 58 Copynumber: 2.5 Consensus size: 58
36710270 CTAAATTAGG
* ** * * ** *
36710280 AAAAAAAATGCCAAGTTCAGGTATCAAATTGGGCCCAAAAAAATTTAAGTACCAAATT
1 AAAAAAAATGTCAAGTTCAAATATCAAATTGAGCCCAAAAAAATGTAAACACCAAAGT
* *
36710338 AAAAAAAATATCAAGTTCAAATGTCAAATTGAG-CCAAAAAAATGTAAACACCAAAGT
1 AAAAAAAATGTCAAGTTCAAATATCAAATTGAGCCCAAAAAAATGTAAACACCAAAGT
*
36710395 AAAAAAAACTGTCAAATTCAAATATCAAAT
1 AAAAAAAA-TGTCAAGTTCAAATATCAAAT
36710425 ATTATATTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
57 28 0.38
58 45 0.62
ACGTcount: A:0.54, C:0.14, G:0.10, T:0.21
Consensus pattern (58 bp):
AAAAAAAATGTCAAGTTCAAATATCAAATTGAGCCCAAAAAAATGTAAACACCAAAGT
Found at i:36711580 original size:31 final size:31
Alignment explanation
Indices: 36711545--36711609 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
36711535 AACAACCTAA
36711545 TGACTTAAATAAAAACTTT-GAAATAGATCAG
1 TGACTTAAATAAAAACTTTCG-AATAGATCAG
* *
36711576 TGACTTAAATGAAAACTTTCGAATAGTTCAG
1 TGACTTAAATAAAAACTTTCGAATAGATCAG
36711607 TGA
1 TGA
36711610 ATAAATTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCGAATAGATCAG
Found at i:36712761 original size:15 final size:15
Alignment explanation
Indices: 36712741--36712774 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36712731 ATTAAAAATA
* *
36712741 TTAAAAAATATATTT
1 TTAAAAAAAATAATT
36712756 TTAAAAAAAATAATT
1 TTAAAAAAAATAATT
36712771 TTAA
1 TTAA
36712775 TAGTTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAAAAAATAATT
Found at i:36713206 original size:3 final size:3
Alignment explanation
Indices: 36713198--36713242 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
36713188 CCACTTATCT
36713198 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36713243 AACTTATCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:36716647 original size:43 final size:43
Alignment explanation
Indices: 36716600--36717000 Score: 270
Period size: 43 Copynumber: 9.1 Consensus size: 43
36716590 TTTATGTGAA
* *
36716600 AAACGCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
* * * * *
36716643 AAACGCCACTAAAGACCATGTTTTTTAGCTGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
* * * *
36716686 AAATGTCGCTAAAGAACAT-AGTCTTTAGCGACGTTTTTCCCAC
1 AAACGCCGCTAAAGAACATGA-TCTTTAGCGGCGCTTTTCCCAC
* * * * *
36716729 AAACTCCGTTAAAGAACATGGTATTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
* * * *
36716772 AAACGCTGCT-AAGAACATGATTTTTAGCGATGCTTTTCTGACGCTTTTCTCGC
1 AAACGCCGCTAAAGAACATGATCTTTAGC---G-------G-CGCTTTTCCCAC
* * * * ** ***
36716825 AAACCCCACTAAAGAACATGGTCTTTAACCACGCTTTTCTTGC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
* * *
36716868 AAACGCCGCTAAAGAACATGATCTTTAACGGCACTTTTACCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
** * * * * * *
36716911 AAACGCAACTAAAAAACATGATTTTTAACGGTGTTTTTTCACAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCG-CTTTTCCCAC
* *
36716955 AAACGCCGCTATAA-AACATGATCTTTAACGACG-TTTTCCCAC
1 AAACGCCGCTA-AAGAACATGATCTTTAGCGGCGCTTTTCCCAC
36716997 AAAC
1 AAAC
36717001 ACCGTTAATA
Statistics
Matches: 276, Mismatches: 66, Indels: 33
0.74 0.18 0.09
Matches are distributed among these distances:
42 27 0.10
43 181 0.66
44 32 0.12
45 3 0.01
52 1 0.00
53 17 0.06
54 15 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTCCCAC
Found at i:36718553 original size:35 final size:35
Alignment explanation
Indices: 36718507--36718579 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
36718497 AGCATCTACT
36718507 TCAGCTATTAGATGCCGTATAGATATTGACAAATA
1 TCAGCTATTAGATGCCGTATAGATATTGACAAATA
36718542 TCAGCTATTAGATGCCGTATAGATATTGACAAATA
1 TCAGCTATTAGATGCCGTATAGATATTGACAAATA
36718577 TCA
1 TCA
36718580 CATAGAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (35 bp):
TCAGCTATTAGATGCCGTATAGATATTGACAAATA
Found at i:36720668 original size:24 final size:24
Alignment explanation
Indices: 36720601--36720669 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
36720591 CGAATCTTTT
* *
36720601 ATTAACAGTTTGAATTCTTTTTCT
1 ATTAATAGTTTGAATTCTTTTTCC
* * *
36720625 ACTT-ATGAATTTTAAATCTTTTTCC
1 A-TTAAT-AGTTTGAATTCTTTTTCC
36720650 ATTAATAGTTTGAATTCTTT
1 ATTAATAGTTTGAATTCTTT
36720670 GAATTTACTT
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTAATAGTTTGAATTCTTTTTCC
Found at i:36721369 original size:18 final size:19
Alignment explanation
Indices: 36721326--36721369 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
36721316 TTAATAATGT
36721326 TAATTTTAGAAATTATCAA
1 TAATTTTAGAAATTATCAA
* *
36721345 AAATTTTAGAAA-TATTAA
1 TAATTTTAGAAATTATCAA
36721363 TAATTTT
1 TAATTTT
36721370 TTTATTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (19 bp):
TAATTTTAGAAATTATCAA
Found at i:36729016 original size:41 final size:41
Alignment explanation
Indices: 36728971--36729412 Score: 393
Period size: 41 Copynumber: 10.8 Consensus size: 41
36728961 GGGGTTTTTA
* * *
36728971 TCATAAACGCTGCTAATGCTATGATCTTTAGCGGTGATTTC
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
* ** *
36729012 TCATAAATGCCACTAATGCTCTGACCTTTAGCGGCGCTTTC
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
* * *
36729053 TCATAAACGCTG-TGAATGTTTTGACCTTTAG-TG-GCTTTC
1 TCATAAACGCTGCT-AATGCTCTGACCTTTAGCGGTGCTTTC
* ** *
36729092 TCATAAATG-TCGCTAATGCTCTGTTCTTTAGCTGTGCTTT-
1 TCATAAACGCT-GCTAATGCTCTGACCTTTAGCGGTGCTTTC
*
36729132 TCCATAAACGCTGCTAATGCTATGACCTTTAGCGGTGCTTTC
1 T-CATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
* **
36729174 TCATAAACGCCGCTAATTTTCTGACCTTTAGCGGTGCTTTC
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
* * *
36729215 TCATAAACG-TCGCTAGTGCTCTGATCTTTAGTGGCT-CTTTC
1 TCATAAACGCT-GCTAATGCTCTGACCTTTAGCGG-TGCTTTC
* * * * *
36729256 ACATAAATG-TCGCTAATGCT-TAAACCTTTAGCAGCGCTTTC
1 TCATAAACGCT-GCTAATGCTCT-GACCTTTAGCGGTGCTTTC
* * *
36729297 ACATAAACGCTGCTAATGCTCAGACCTTTAGCAGTGCTTTC
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
* * * ***
36729338 ACATAAACTCCGCTAATGCT-TAGACCTTTAGCGACACTTTC
1 TCATAAACGCTGCTAATGCTCT-GACCTTTAGCGGTGCTTTC
* *
36729379 TCATAAGCG-TCGTTAATGCTCTGACCTTTAGCGG
1 TCATAAACGCT-GCTAATGCTCTGACCTTTAGCGG
36729413 CGTTTTTCCT
Statistics
Matches: 326, Mismatches: 58, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.00
39 28 0.09
40 7 0.02
41 285 0.87
42 5 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (41 bp):
TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTC
Found at i:36729082 original size:82 final size:82
Alignment explanation
Indices: 36728971--36729412 Score: 454
Period size: 82 Copynumber: 5.4 Consensus size: 82
36728961 GGGGTTTTTA
* * * *
36728971 TCATAAACGCTGCTAATGCTATGATCTTTAGCGGTGATTTCTCATAAATGCCACTAATGCTCTGA
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTCTCATAAATGCCGCTAATGCTCTGA
36729036 CCTTTAGCGGCGCTTTC
66 CCTTTAGCGGCGCTTTC
* * * *
36729053 TCATAAACGCTG-TGAATGTTTTGACCTTTAG-TG-GCTTTCTCATAAATGTCGCTAATGCTCTG
1 TCATAAACGCTGCT-AATGCTCTGACCTTTAGCGGTGCTTTCTCATAAATGCCGCTAATGCTCTG
** * *
36729115 TTCTTTAGCTGTGCTTT-
65 ACCTTTAGCGGCGCTTTC
* * **
36729132 TCCATAAACGCTGCTAATGCTATGACCTTTAGCGGTGCTTTCTCATAAACGCCGCTAATTTTCTG
1 T-CATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTCTCATAAATGCCGCTAATGCTCTG
*
36729197 ACCTTTAGCGGTGCTTTC
65 ACCTTTAGCGGCGCTTTC
* * * * *
36729215 TCATAAACG-TCGCTAGTGCTCTGATCTTTAGTGGCT-CTTTCACATAAATGTCGCTAATGCT-T
1 TCATAAACGCT-GCTAATGCTCTGACCTTTAGCGG-TGCTTTCTCATAAATGCCGCTAATGCTCT
* *
36729277 AAACCTTTAGCAGCGCTTTC
64 -GACCTTTAGCGGCGCTTTC
* * * *
36729297 ACATAAACGCTGCTAATGCTCAGACCTTTAGCAGTGCTTTCACATAAACT-CCGCTAATGCT-TA
1 TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTCTCATAAA-TGCCGCTAATGCTCT-
* *
36729360 GACCTTTAGCGACACTTTC
64 GACCTTTAGCGGCGCTTTC
* *
36729379 TCATAAGCG-TCGTTAATGCTCTGACCTTTAGCGG
1 TCATAAACGCT-GCTAATGCTCTGACCTTTAGCGG
36729413 CGTTTTTCCT
Statistics
Matches: 298, Mismatches: 49, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.00
80 65 0.22
81 8 0.03
82 220 0.74
83 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (82 bp):
TCATAAACGCTGCTAATGCTCTGACCTTTAGCGGTGCTTTCTCATAAATGCCGCTAATGCTCTGA
CCTTTAGCGGCGCTTTC
Found at i:36729273 original size:123 final size:123
Alignment explanation
Indices: 36728971--36729414 Score: 462
Period size: 123 Copynumber: 3.6 Consensus size: 123
36728961 GGGGTTTTTA
* * * * *
36728971 TCATAAACG-CTGCTAATGCTATGATCTTTAGCGG-TGATTTCTCATAAATGCCACTAATGCTCT
1 TCATAAACGTC-GCTAATGCTCTGATCTTTAGCGGCT-CTTTCTCATAAACGTCGCTAATGCTCT
*
36729034 GACCTTTAGCGGCGCTTTCTCATAAACGCTG-TGAATGTTT-TGACCTTTAG-TG-GCTTTC
64 GACCTTTAGCGGCGCTTTCTCATAAACGCTGCT-AAT-TTTCTGACCTTTAGCAGTGCTTTC
* * *
36729092 TCATAAATGTCGCTAATGCTCTGTTCTTTAGCTGTGCT-TTTC-CATAAACG-CTGCTAATGCTA
1 TCATAAACGTCGCTAATGCTCTGATCTTTAGC-G-GCTCTTTCTCATAAACGTC-GCTAATGCTC
* * *
36729154 TGACCTTTAGCGGTGCTTTCTCATAAACGCCGCTAATTTTCTGACCTTTAGCGGTGCTTTC
63 TGACCTTTAGCGGCGCTTTCTCATAAACGCTGCTAATTTTCTGACCTTTAGCAGTGCTTTC
* * * * *
36729215 TCATAAACGTCGCTAGTGCTCTGATCTTTAGTGGCTCTTTCACATAAATGTCGCTAATGCT-TAA
1 TCATAAACGTCGCTAATGCTCTGATCTTTAGCGGCTCTTTCTCATAAACGTCGCTAATGCTCT-G
* * ** *
36729279 ACCTTTAGCAGCGCTTTCACATAAACGCTGCTAATGCTCAGACCTTTAGCAGTGCTTTC
65 ACCTTTAGCGGCGCTTTCTCATAAACGCTGCTAATTTTCTGACCTTTAGCAGTGCTTTC
* * * * * *
36729338 ACATAAAC-TCCGCTAATGCT-TAGACCTTTAGCGACACTTTCTCATAAGCGTCGTTAATGCTCT
1 TCATAAACGT-CGCTAATGCTCT-GATCTTTAGCGGCTCTTTCTCATAAACGTCGCTAATGCTCT
36729401 GACCTTTAGCGGCG
64 GACCTTTAGCGGCG
36729415 TTTTTCCTAT
Statistics
Matches: 272, Mismatches: 35, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
120 4 0.01
121 88 0.32
122 16 0.06
123 161 0.59
124 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (123 bp):
TCATAAACGTCGCTAATGCTCTGATCTTTAGCGGCTCTTTCTCATAAACGTCGCTAATGCTCTGA
CCTTTAGCGGCGCTTTCTCATAAACGCTGCTAATTTTCTGACCTTTAGCAGTGCTTTC
Found at i:36729447 original size:41 final size:40
Alignment explanation
Indices: 36729402--36729538 Score: 118
Period size: 40 Copynumber: 3.4 Consensus size: 40
36729392 TAATGCTCTG
* * * * *
36729402 ACCTTTAGCGGCGTTTTTCCTATAAACGCCATTATTGCTTT
1 ACCTTTTGCGGCGTTTAT-CAAAAAACGCCATCATTGCTTT
* * *
36729443 ACCTTTTGCGGTGTTTATGAAAAAACGCCGTCATTGCTTT
1 ACCTTTTGCGGCGTTTATCAAAAAACGCCATCATTGCTTT
*
36729483 ACCTTTTGCGGCGTTTA-CAGAAAGACGTCGC-T-ATTGCTTT
1 ACCTTTTGCGGCGTTTATCA-AAAAACG-C-CATCATTGCTTT
* *
36729523 ACCTTTGGTGGCGTTT
1 ACCTTTTGCGGCGTTT
36729539 TTATCTAAAC
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 61 0.76
41 17 0.21
42 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (40 bp):
ACCTTTTGCGGCGTTTATCAAAAAACGCCATCATTGCTTT
Found at i:36729519 original size:40 final size:39
Alignment explanation
Indices: 36729425--36729538 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 39
36729415 TTTTTCCTAT
* * *
36729425 AAACGCCATTATTGCTTTACCTTTTGCGGTGTTTATGAAA
1 AAACGCC-GTATTGCTTTACCTTTTGCGGCGTTTAAGAAA
36729465 AAACGCCGTCATTGCTTTACCTTTTGCGGCGTTTACAG-AA
1 AAACGCCGT-ATTGCTTTACCTTTTGCGGCGTTTA-AGAAA
* * * *
36729505 AGACGTCGCTATTGCTTTACCTTTGGTGGCGTTT
1 AAACGCCG-TATTGCTTTACCTTTTGCGGCGTTT
36729539 TTATCTAAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 61 0.95
41 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (39 bp):
AAACGCCGTATTGCTTTACCTTTTGCGGCGTTTAAGAAA
Found at i:36731759 original size:51 final size:51
Alignment explanation
Indices: 36731703--36731799 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
36731693 TATCAACAAC
*
36731703 TTCATCAGCAACATTATCCACTCCATCTGATGTTGCAAAATTAGCATCATA
1 TTCATCAGCAACATTATCCACTCCATCTGATGTTGCAAAATCAGCATCATA
** * *
36731754 TTCATCAGCAGTATTATTCTCTCCATCTGATGTTGCAAAATCAGCA
1 TTCATCAGCAACATTATCCACTCCATCTGATGTTGCAAAATCAGCA
36731800 GCAACTTCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (51 bp):
TTCATCAGCAACATTATCCACTCCATCTGATGTTGCAAAATCAGCATCATA
Found at i:36731872 original size:33 final size:33
Alignment explanation
Indices: 36731835--36732032 Score: 131
Period size: 33 Copynumber: 6.0 Consensus size: 33
36731825 CAACAGTAAA
* *
36731835 CCCTTTTATATCACCCTCCACATCAGCTTCTAC
1 CCCTTTCATATCACCCTCCACATCAACTTCTAC
* * * * * *
36731868 CCC-TTCTACATCACCTTCCTCAACAGCTTTTA-
1 CCCTTTC-ATATCACCCTCCACATCAACTTCTAC
* * *
36731900 CCCTTTCCAAATCA-CCTTCACTATTAGA-TTCTAC
1 CCCTTT-CATATCACCCTCCAC-ATCA-ACTTCTAC
*
36731934 CCC-TTCATCATCACCCTCCCCATCAACTTCTAC
1 CCCTTTCAT-ATCACCCTCCACATCAACTTCTAC
* * * *
36731967 CCC-TCCTACATCACCCTCCTCGTCAACTTCTAC
1 CCCTTTC-ATATCACCCTCCACATCAACTTCTAC
*
36732000 CCC-TTCATCATCACCCTCCCCATCAACTTCTAC
1 CCCTTTCAT-ATCACCCTCCACATCAACTTCTAC
36732033 AACTTCATCA
Statistics
Matches: 128, Mismatches: 26, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
32 13 0.10
33 105 0.82
34 10 0.08
ACGTcount: A:0.22, C:0.45, G:0.02, T:0.31
Consensus pattern (33 bp):
CCCTTTCATATCACCCTCCACATCAACTTCTAC
Found at i:36731968 original size:66 final size:66
Alignment explanation
Indices: 36731844--36732032 Score: 206
Period size: 66 Copynumber: 2.9 Consensus size: 66
36731834 ACCCTTTTAT
* * * * * * * *
36731844 ATCACCCTCCACATCAGCTTCTACCCCTTC-TACATCACCTTCCTCAACAGCTTTTACCCTTTCC
1 ATCACCCTCCTCATCAACTTCTACCCCTTCAT-CATCACCCTCCCCATCAACTTCTACCC-CTCC
36731908 -AA
64 TAA
* *
36731910 ATCACCTTCACT-ATTAGA-TTCTACCCCTTCATCATCACCCTCCCCATCAACTTCTACCCCTCC
1 ATCACCCTC-CTCATCA-ACTTCTACCCCTTCATCATCACCCTCCCCATCAACTTCTACCCCTCC
*
36731973 TAC
64 TAA
*
36731976 ATCACCCTCCTCGTCAACTTCTACCCCTTCATCATCACCCTCCCCATCAACTTCTAC
1 ATCACCCTCCTCATCAACTTCTACCCCTTCATCATCACCCTCCCCATCAACTTCTAC
36732033 AACTTCATCA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
65 6 0.06
66 95 0.92
67 2 0.02
ACGTcount: A:0.22, C:0.46, G:0.02, T:0.30
Consensus pattern (66 bp):
ATCACCCTCCTCATCAACTTCTACCCCTTCATCATCACCCTCCCCATCAACTTCTACCCCTCCTA
A
Found at i:36732031 original size:99 final size:99
Alignment explanation
Indices: 36731844--36732054 Score: 228
Period size: 99 Copynumber: 2.1 Consensus size: 99
36731834 ACCCTTTTAT
* * * * * * *
36731844 ATCACCCTCCACATCAGCTTCTACCCCTTCTACATCACCTTCCTCAACAGCTTTTACCCTTTCCA
1 ATCACCCTCCCCATCAACTTCTACCCCTCCTACATCACCCTCCTCAACAACTTCTACCCCTTCCA
* * * **
36731909 AATCACCTTCACTATTAGATTCTACCCCTTCATC
66 AATCACCCTCACCATCAGATTCTACAACTTCATC
**
36731943 ATCACCCTCCCCATCAACTTCTACCCCTCCTACATCACCCTCCTCGTCAACTTCTACCCCTT-CA
1 ATCACCCTCCCCATCAACTTCTACCCCTCCTACATCACCCTCCTCAACAACTTCTACCCCTTCCA
* *
36732007 TCATCACCCTCCCCATCA-ACTTCTACAACTTCATC
66 -AATCACCCTCACCATCAGA-TTCTACAACTTCATC
* *
36732042 ATAACCCTTCCCA
1 ATCACCCTCCCCA
36732055 ACAGTCAACA
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
98 3 0.03
99 89 0.97
ACGTcount: A:0.23, C:0.45, G:0.02, T:0.29
Consensus pattern (99 bp):
ATCACCCTCCCCATCAACTTCTACCCCTCCTACATCACCCTCCTCAACAACTTCTACCCCTTCCA
AATCACCCTCACCATCAGATTCTACAACTTCATC
Found at i:36732039 original size:33 final size:32
Alignment explanation
Indices: 36731928--36732054 Score: 155
Period size: 33 Copynumber: 3.8 Consensus size: 32
36731918 CACTATTAGA
36731928 TTCTACCCCTTCATCATCACCCTCCCCATCAAC
1 TTCTA-CCCTTCATCATCACCCTCCCCATCAAC
* * * *
36731961 TTCTACCCCTCCTACATCACCCTCCTCGTCAAC
1 TTCTACCCTTCAT-CATCACCCTCCCCATCAAC
36731994 TTCTACCCCTTCATCATCACCCTCCCCATCAAC
1 TTCTA-CCCTTCATCATCACCCTCCCCATCAAC
* * *
36732027 TTCTACAACTTCATCATAACCCTTCCCA
1 TTCTAC-CCTTCATCATCACCCTCCCCA
36732055 ACAGTCAACA
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
32 7 0.09
33 67 0.84
34 6 0.08
ACGTcount: A:0.22, C:0.49, G:0.01, T:0.28
Consensus pattern (32 bp):
TTCTACCCTTCATCATCACCCTCCCCATCAAC
Found at i:36732989 original size:16 final size:16
Alignment explanation
Indices: 36732929--36732987 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
36732919 CGTTCTTGGG
*
36732929 TTAGGGA-TTCAATGAT
1 TTAGGGATTTTAAT-AT
36732945 TT-GGAGATTTTAATAT
1 TTAGG-GATTTTAATAT
36732961 TTAGGGATTTTAATATT
1 TTAGGGATTTTAATA-T
36732978 TTAGGGATTT
1 TTAGGGATTT
36732988 AAAAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 2 0.05
16 18 0.47
17 18 0.47
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.47
Consensus pattern (16 bp):
TTAGGGATTTTAATAT
Found at i:36737698 original size:43 final size:44
Alignment explanation
Indices: 36737637--36737719 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
36737627 TGTTATAGAA
*
36737637 AGCCTACTAGGCACAAAG-CTTGAAACACCGGCACAGAGCACAG
1 AGCCTACTAGGCACAAAGCCTGGAAACACCGGCACAGAGCACAG
36737680 AGCCTACTAGGCACAAAGCCTGGAAACACCGGCACAGAGC
1 AGCCTACTAGGCACAAAGCCTGGAAACACCGGCACAGAGC
36737720 CTACTAGGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
43 18 0.47
44 20 0.53
ACGTcount: A:0.36, C:0.31, G:0.24, T:0.08
Consensus pattern (44 bp):
AGCCTACTAGGCACAAAGCCTGGAAACACCGGCACAGAGCACAG
Found at i:36748097 original size:85 final size:86
Alignment explanation
Indices: 36747967--36748135 Score: 286
Period size: 85 Copynumber: 2.0 Consensus size: 86
36747957 AAATCGGTGT
* *
36747967 TTTTCCCCCTCAAACTTGCTTGCTTGACACGCTCAACAGGAGGGTTGAGGGAAAAAGAACTTACT
1 TTTTCCCCCTCAAACTTGCTTGCTTGACACACTCAACAAGAGGGTTGAGGGAAAAAGAACTTACT
36748032 TACACCGATATAAGTTAGTTG
66 TACACCGATATAAGTTAGTTG
*
36748053 TTTT-CCCCTCAAACTTGCTTGCTTGACGCACTCAACAAGAGGGTTGAGGGAAAAAGAACTTACT
1 TTTTCCCCCTCAAACTTGCTTGCTTGACACACTCAACAAGAGGGTTGAGGGAAAAAGAACTTACT
* *
36748117 TACACCGGTGTAAGTTAGT
66 TACACCGATATAAGTTAGT
36748136 ATTGATAAGG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
85 74 0.95
86 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (86 bp):
TTTTCCCCCTCAAACTTGCTTGCTTGACACACTCAACAAGAGGGTTGAGGGAAAAAGAACTTACT
TACACCGATATAAGTTAGTTG
Found at i:36748734 original size:31 final size:28
Alignment explanation
Indices: 36748664--36748717 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
36748654 GTAACGGTTT
*
36748664 AATAGTTTAGGTACCAATTCTGATAAAA
1 AATAGTTTAGGTACCAATTCTGAGAAAA
36748692 AA-AGTTTAGGTACCAATT-TGAGAAAA
1 AATAGTTTAGGTACCAATTCTGAGAAAA
36748718 CTAGTATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 7 0.28
27 16 0.64
28 2 0.08
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (28 bp):
AATAGTTTAGGTACCAATTCTGAGAAAA
Found at i:36750383 original size:2 final size:2
Alignment explanation
Indices: 36750366--36750402 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
36750356 TCTATAGAAA
36750366 AT AT A- AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A
36750403 GACCTAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:36752951 original size:2 final size:2
Alignment explanation
Indices: 36752944--36752981 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
36752934 CATACACCCT
36752944 TC TC TC TC TC TC TC -C TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
36752982 TACTTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:36755035 original size:5 final size:5
Alignment explanation
Indices: 36755025--36755049 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36755015 GGAACTTGAA
36755025 ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT
36755050 TGACAGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:36761570 original size:17 final size:19
Alignment explanation
Indices: 36761550--36761584 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36761540 TTAAAATAGT
36761550 AACAA-AATTA-ATAATAA
1 AACAAGAATTATATAATAA
36761567 AACAAGAATTATATAATA
1 AACAAGAATTATATAATA
36761585 TTCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (19 bp):
AACAAGAATTATATAATAA
Found at i:36765057 original size:66 final size:66
Alignment explanation
Indices: 36764976--36765182 Score: 378
Period size: 66 Copynumber: 3.1 Consensus size: 66
36764966 AGCATATTGA
*
36764976 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTAAACCCTGTCATGACTTGAGAAGG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
36765041 T
66 T
36765042 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
36765107 T
66 T
* *
36765108 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCACTCAGCCCTGTCATGACTTGAGAAGG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
36765173 T
66 T
36765174 GAACGCCAT
1 GAAC-CCAT
36765183 GAAGATGAGG
Statistics
Matches: 137, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
66 133 0.97
67 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (66 bp):
GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
T
Found at i:36777782 original size:3 final size:3
Alignment explanation
Indices: 36777774--36777823 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
36777764 TAATTTCTGC
*
36777774 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
36777822 AA
1 AA
36777824 AGCACACATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:36778741 original size:369 final size:361
Alignment explanation
Indices: 36778019--36778725 Score: 930
Period size: 367 Copynumber: 1.9 Consensus size: 361
36778009 TAACTATAAT
* *
36778019 AATCCGATGAAGTTGATATAGTAGAAGACTACAGCGATGGTGAACTTCTAGTTTTTTCTATTAAC
1 AATCCGATGAAGTTGATATAGTAGAAGACTACAACGATGGTGAACTTCTAGTTGTTTCTATTAAC
* * * *
36778084 AACTCTAAAGTAAGTGAGAGTGGATCCTCAATCTGGTTATACTTTCCATATGAGTCCCAAACAGG
66 AACTCTAAAGTAAGCGAGAGTGGATCCTCAATCTGGTTACACTGTCCATATAAGTCCCAAACAGG
*
36778149 ATTGGTTTACAACTTATAAAACAATGTCTGAAGACGTTGTTTTGATGGGAAATAATACTTCTGTA
131 ATTGGTTTACAACTTATAAAACAATGTCTGAAGACGTTGTTTTGATGGGAAATAATACTTCAGTA
* * * * * * *
36778214 GAATCACAGGTATTGGCATGATAAAAATTAAGATGTTTGATGGAGTTGTTAAATACTTAGTGGTG
196 GAATCACAGGTATTGACACGACAAAAATTAAGATGTTTAATGGAGTCGTCAAACACTTAGTGGTG
* * * *
36778279 TACGACATATACCAGAATTGAAGTGAAATTTGATTTTGTTGTGTGCTCTTGATTCAAAAGAGTAC
261 TACGACATATACCAAAATTGAACTGAAATTTGATTTTGTTATGTACTCTTGATTCAAAAGAGTAC
36778344 AAGTGCACAGCTGAAAGTGACAAAAGTGAAAACAGCCAGAAC
326 AAGT-CACA-CT--AAGT-A-AAAAGTGAAAACAGCCAGAAC
* *
36778386 AATCCGATGAAGTTGATGTAGTAGGAGACTACAACGATGGTGAACTTCTAGTTGTTTCTATTAAC
1 AATCCGATGAAGTTGATATAGTAGAAGACTACAACGATGGTGAACTTCTAGTTGTTTCTATTAAC
* *
36778451 AACTCTAAAGTAAGCGAGGAGTGGATCCTCAATTCTGGTTACACTGTCCATATAATTCCCAAACG
66 AACTCTAAAGTAAGCGA-GAGTGGATCCTCAA-TCTGGTTACACTGTCCATATAAGTCCCAAACA
* ** **
36778516 GGATTGGTTTACAACTTATGAAACAATGTCTGAAGGTGTTGTTTTTTTTGAT-GGAAATAATGTT
129 GGATTGGTTTACAACTTATAAAACAATGTCTGAAGACGTTG----TTTTGATGGGAAATAATACT
* *
36778580 TCAAGTAGAATCGCAGGTAGGTATTGACACGACCAAAATTAAGATGTTTAATGGAGTCGTCAGAA
190 TC-AGTAGAAT--CA--CAGGTATTGACACGACAAAAATTAAGATGTTTAATGGAGTCGTCA-AA
* * *
36778645 CACTTAGTGGTGTATGACATGTACCAAAATTTAACTGAAATTTGATTTTGTTATGTACTCTTGAT
249 CACTTAGTGGTGTACGACATATACCAAAATTGAACTGAAATTTGATTTTGTTATGTACTCTTGAT
** *
36778710 TTTAAAGGGTACAAGT
314 TCAAAAGAGTACAAGT
36778726 ACATAGCTAA
Statistics
Matches: 293, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
367 77 0.26
368 14 0.05
369 65 0.22
372 12 0.04
373 14 0.05
375 2 0.01
377 37 0.13
378 72 0.25
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (361 bp):
AATCCGATGAAGTTGATATAGTAGAAGACTACAACGATGGTGAACTTCTAGTTGTTTCTATTAAC
AACTCTAAAGTAAGCGAGAGTGGATCCTCAATCTGGTTACACTGTCCATATAAGTCCCAAACAGG
ATTGGTTTACAACTTATAAAACAATGTCTGAAGACGTTGTTTTGATGGGAAATAATACTTCAGTA
GAATCACAGGTATTGACACGACAAAAATTAAGATGTTTAATGGAGTCGTCAAACACTTAGTGGTG
TACGACATATACCAAAATTGAACTGAAATTTGATTTTGTTATGTACTCTTGATTCAAAAGAGTAC
AAGTCACACTAAGTAAAAAGTGAAAACAGCCAGAAC
Found at i:36783689 original size:39 final size:39
Alignment explanation
Indices: 36783646--36783772 Score: 121
Period size: 39 Copynumber: 3.3 Consensus size: 39
36783636 ATCTACCCCA
*
36783646 CTCGGGGTAATAGATTGGCTGAAGGTGATCTGCCCTAGG
1 CTCGGGGTAATAGATTGACTGAAGGTGATCTGCCCTAGG
* * *** * *
36783685 CTCGGGGT-ATAAGATCGAATGGCTGTAATCTGCCCCAGG
1 CTCGGGGTAAT-AGATTGACTGAAGGTGATCTGCCCTAGG
** * * *
36783724 CTTAGGGTAAGAGATTGACTGATGGTGATCTGCCCTAAG
1 CTCGGGGTAATAGATTGACTGAAGGTGATCTGCCCTAGG
36783763 CTCGGGGTAA
1 CTCGGGGTAA
36783773 AGGATCGGAT
Statistics
Matches: 65, Mismatches: 21, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
38 2 0.03
39 62 0.95
40 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (39 bp):
CTCGGGGTAATAGATTGACTGAAGGTGATCTGCCCTAGG
Found at i:36783759 original size:78 final size:76
Alignment explanation
Indices: 36783540--36783817 Score: 324
Period size: 78 Copynumber: 3.6 Consensus size: 76
36783530 AGCTCAGGTA
* * * * * *
36783540 AAAGATCGGATGGTTGCAATCTGCCCTAGTTTCGAGGTAAGAGATTGGCTGATGGTGATCTACCC
1 AAAGATCGAATGGCTGCAATCTGCCCCAGCTT-GGGGTAAGAGATTGGCTGATGGTGATCTGCCC
* **
36783605 CAAGCTCAAGGT
65 TAAGCTCGGGGT
* * * *
36783617 AAAAGATCGAATGGCTGCAATCTACCCCA-CTCGGGGTAATAGATTGGCTGAAGGTGATCTGCCC
1 -AAAGATCGAATGGCTGCAATCTGCCCCAGCTTGGGGTAAGAGATTGGCTGATGGTGATCTGCCC
*
36783681 TAGGCTCGGGGT
65 TAAGCTCGGGGT
* * *
36783693 ATAAGATCGAATGGCTGTAATCTGCCCCAGGCTTAGGGTAAGAGATTGACTGATGGTGATCTGCC
1 A-AAGATCGAATGGCTGCAATCTGCCCCA-GCTTGGGGTAAGAGATTGGCTGATGGTGATCTGCC
36783758 CTAAGCTCGGGGT
64 CTAAGCTCGGGGT
* *
36783771 AAAGGATCGGATGGTTGCAATCTGCCCCAAGCTTGGGGTAAGAGATT
1 AAA-GATCGAATGGCTGCAATCTGCCCC-AGCTTGGGGTAAGAGATT
36783818 TTCAATCTAC
Statistics
Matches: 169, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
75 1 0.01
76 61 0.36
77 3 0.02
78 103 0.61
79 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (76 bp):
AAAGATCGAATGGCTGCAATCTGCCCCAGCTTGGGGTAAGAGATTGGCTGATGGTGATCTGCCCT
AAGCTCGGGGT
Found at i:36784188 original size:49 final size:49
Alignment explanation
Indices: 36784113--36784225 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 49
36784103 TCACCGTTAC
* * * *
36784113 GGCCTTAACCTTTCCCTTCGTATCTTCGTGGTA-CTGGATTCGTCGTTGA
1 GGCCTCAACCTTTCCATTCGTATCTTCATGGTACCAGG-TTCGTCGTTGA
* *
36784162 GGCCTCAACCTTTCCATTCGTGTCTTCATGGTACCAGGTTCGTCGTTGC
1 GGCCTCAACCTTTCCATTCGTATCTTCATGGTACCAGGTTCGTCGTTGA
36784211 GGCCTCAACCTTTCC
1 GGCCTCAACCTTTCC
36784226 CATCGCATCT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 54 0.95
50 3 0.05
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.35
Consensus pattern (49 bp):
GGCCTCAACCTTTCCATTCGTATCTTCATGGTACCAGGTTCGTCGTTGA
Found at i:36784708 original size:246 final size:241
Alignment explanation
Indices: 36784357--36784807 Score: 647
Period size: 246 Copynumber: 1.9 Consensus size: 241
36784347 CAGTTGCAGT
*
36784357 CTCAACTTTTCCTTTCATATCTTCGTGGTACGTTCGTCGTTGCAGCCTCAACCTTCCTTTATATC
1 CTCAACTTTTCCTTTCATATCTTCGTGGTACGTTCGTCGTTACAGCCTCAACCTTCCTTTATATC
36784422 TTCGTGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGGAT
66 TTCGTGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGGAT
* * *
36784487 TCACCGTCGTGACCTCAATCCTTCCCTTTATCTCTTCATGGTATTGGGTTC-CTCGTTGCGGCCT
131 TCACCATCGTGACCTCAATCCTTCCCTTCATCTCTTCATGGTATCGGGTTCGC-CGTTGCGGCCT
36784551 CAACCTTTCCCTTTGTATATTCGTGGTACCAGGTTTACCGTTACGGC
195 CAACCTTTCCCTTTGTATATTCGTGGTACCAGGTTTACCGTTACGGC
* * * * *
36784598 CTCAACTTTTCCTTTCGTATCTTTGTGGTATCGAGTTCG-CTTTTACTGTCTCAACCTTTCCCTT
1 CTCAACTTTTCCTTTCATATCTTCGTGGTA-C--GTTCGTC-GTTACAGCCTCAACC-TT-CCTT
* * * * * *
36784662 TGTATCTTCTTGGTATCGTGTTCGCCGTTGC-AGCCTTAACCTTTCCCATCGCATCTTTTTAGGT
60 TATATCTTCGTGGTACCGGGTTCGCCGTTGCGA-CCTCAACCTTTCCCATCGCATCTTCTTAGGT
*
36784726 ACCGGATTCGCCATCGTGACCTCAATCCTTCCCTTCATCTCTTCATGGTATCGGGTTCGCCGTTG
124 ACCGGATTCACCATCGTGACCTCAATCCTTCCCTTCATCTCTTCATGGTATCGGGTTCGCCGTTG
* *
36784791 TGGCCTTAACCTTTCCC
189 CGGCCTCAACCTTTCCC
36784808 ATCACATCTT
Statistics
Matches: 184, Mismatches: 18, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
241 28 0.15
242 1 0.01
243 1 0.01
244 16 0.09
245 3 0.02
246 134 0.73
247 1 0.01
ACGTcount: A:0.14, C:0.31, G:0.18, T:0.38
Consensus pattern (241 bp):
CTCAACTTTTCCTTTCATATCTTCGTGGTACGTTCGTCGTTACAGCCTCAACCTTCCTTTATATC
TTCGTGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGGAT
TCACCATCGTGACCTCAATCCTTCCCTTCATCTCTTCATGGTATCGGGTTCGCCGTTGCGGCCTC
AACCTTTCCCTTTGTATATTCGTGGTACCAGGTTTACCGTTACGGC
Found at i:36784769 original size:99 final size:99
Alignment explanation
Indices: 36784666--36785424 Score: 482
Period size: 99 Copynumber: 7.6 Consensus size: 99
36784656 TCCCTTTGTA
* * * * *
36784666 TCTTCTTGGTATCGTGTTCGCCGTTGCAGCCTTAACCTTTCCCATCGCATCTTTTTAGGTACCGG
1 TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCGA
*
36784731 ATTCGCCATCGTGACCTCAATCCTTCCCTTCATC
66 ATTCGCCATCGCGACCTCAATCCTTCCCTTCATC
** * * *
36784765 TCTTCATGGTATCGGGTTCGCCGTTGTGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACC-A
1 TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCGA
* * * *
36784829 AGTTCGCCATTGCAACCTCAA-CCTTTCCCTTCGTA
66 A-TTCGCCATCGCGACCTCAATCC-TTCCCTTCATC
* * * * *
36784864 TCTTCGTGGTACCGGGTTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTTTTTAGGTATCGA
1 TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCGA
* *
36784929 ATTCGCCGTCGCGGCCTCAATCCTTCCCTTCATC
66 ATTCGCCATCGCGACCTCAATCCTTCCCTTCATC
*
36784963 TCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCATTCCCATCACATCTTTTTAGG
1 TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACC--T----TTCCCATCACATCTTTTTAGG
** * * * * * * * *
36785028 TACCGGGTTCACCGTTGCGGCTTCAATCTTTCCTTTTA-C
60 TACCGAATTCGCCATCGCGACCTCAATCCTTCCCTTCATC
** * * * * *
36785067 ATCTTCATGGTA-CTGGGTTCATCGTTGCGGCCTTAATCTTTCCCATCACATCTTCTTAGGTATC
1 -TCTTCATGGTATC-GGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACC
* * * * * * * *
36785131 GAGTTCACCGTTGC-AGCCTCAACCCTTTCTCTTCGTA
64 GAATTCGCCATCGCGA-CCTCAATCC-TTCCCTTCATC
* * * * * * *
36785168 TCTTCGTCGTA-CATGGTTCGCGGTTGC-GGCTCAACCTTTCCCATAACATCTTCTTAGGTACC-
1 TCTTCATGGTATC-GGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCG
** * * * *
36785230 AGGCTCACCGTTGCGACCTCAA-CCTTTCCCTTC-GC
65 A-ATTCGCCATCGCGACCTCAATCC-TTCCCTTCATC
* ** * * * * * * * * **
36785265 ATCTTCATGGTACCGAATTTGTCATTACGGCCTTAACCTTTCCCATCACATCTTCTTATGTATTG
1 -TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCG
* * * ** * *
36785330 -GTTCACCGTTACGGCCTCAA-CCTTTCCCTTCATA
65 AATTCGCCATCGCGACCTCAATCC-TTCCCTTCATC
* * * * * *
36785364 TCGTT-GTGGTACCGAGTTCGCCATTGCGGCATCAACCTTTCCCATCACATCTTTTTAGGTA
1 TC-TTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTA
36785425 TCGGGCTCGC
Statistics
Matches: 532, Mismatches: 105, Indels: 47
0.78 0.15 0.07
Matches are distributed among these distances:
98 106 0.20
99 313 0.59
100 30 0.06
101 1 0.00
103 1 0.00
104 2 0.00
105 79 0.15
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (99 bp):
TCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATCACATCTTTTTAGGTACCGA
ATTCGCCATCGCGACCTCAATCCTTCCCTTCATC
Found at i:36784969 original size:198 final size:199
Alignment explanation
Indices: 36784647--36785424 Score: 789
Period size: 198 Copynumber: 3.9 Consensus size: 199
36784637 CTTTTACTGT
* * * * * * *
36784647 CTCAACCTTTCCCTTTGTATCTTCTTGGTATCGTGTTCGCCGTTGCAGCCTTAACCTTTCCCATC
1 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATC
* * * * * * * * *
36784712 GCATCTTTTTAGGTACCGGATTCGCCATCGTGACCTCAATCC-TTCCCTTCATCTCTTCATGGTA
66 ACATCTTCTTAGGTATCGAATTCACCGTCGCGGCCTCAATCCTTTCCCTTCATATCTTCATGGTA
* * * * * * *
36784776 TCGGGTTCGCCGTTGTGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAAGTTCGCCATTG
131 TCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCAGGTTCACCGTTG
*
36784841 CAAC
196 CGAC
* * *
36784845 CTCAACCTTTCCCTTCGTATCTTCGTGGTACCGGGTTCGCCGTTACGGCCTCAACCTTTCCCATC
1 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATC
* * *
36784910 ACATCTTTTTAGGTATCGAATTCGCCGTCGCGGCCTCAATCC-TTCCCTTCATCTCTTCATGGTA
66 ACATCTTCTTAGGTATCGAATTCACCGTCGCGGCCTCAATCCTTTCCCTTCATATCTTCATGGTA
* * *
36784974 TCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCATTCCCATCACATCTTTTTAGGTACCGGGTTCA
131 TCGAGTTCGCCGTTGCGGCCTCAACC--T----TTCCCATCACATCTTCTTAGGTACCAGGTTCA
*
36785039 CCGTTGCGGC
190 CCGTTGCGAC
* * * ** * ** * *
36785049 TTCAATCTTTCCTTTTACATCTTCATGGTACTGGGTTCATCGTTGCGGCCTTAATCTTTCCCATC
1 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATC
* * * * * * * *
36785114 ACATCTTCTTAGGTATCGAGTTCACCGTTGCAGCCTCAACCCTTTCTCTTCGTATCTTCGTCGTA
66 ACATCTTCTTAGGTATCGAATTCACCGTCGCGGCCTCAATCCTTTCCCTTCATATCTTCATGGTA
* * *
36785179 -C-ATGGTTCGCGGTTGCGG-CTCAACCTTTCCCATAACATCTTCTTAGGTACCAGGCTCACCGT
131 TCGA--GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCAGGTTCACCGT
36785241 TGCGAC
194 TGCGAC
** * * *
36785247 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGAATTTGTCATTACGGCCTTAACCTTTCCCATC
1 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATC
* * * ** *
36785312 ACATCTTCTTATGTATTG-GTTCACCGTTACGGCCTCAA-CCTTTCCCTTCATATCGTT-GTGGT
66 ACATCTTCTTAGGTATCGAATTCACCGTCGCGGCCTCAATCCTTTCCCTTCATATC-TTCATGGT
* * * *
36785374 ACCGAGTTCGCCATTGCGGCATCAACCTTTCCCATCACATCTTTTTAGGTA
130 ATCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTA
36785425 TCGGGCTCGC
Statistics
Matches: 486, Mismatches: 81, Indels: 27
0.82 0.14 0.05
Matches are distributed among these distances:
196 31 0.06
197 49 0.10
198 244 0.50
200 1 0.00
202 1 0.00
203 1 0.00
204 130 0.27
205 29 0.06
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (199 bp):
CTCAACCTTTCCCTTCGCATCTTCATGGTACCGGGTTCGCCGTTACGGCCTTAACCTTTCCCATC
ACATCTTCTTAGGTATCGAATTCACCGTCGCGGCCTCAATCCTTTCCCTTCATATCTTCATGGTA
TCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCAGGTTCACCGTTG
CGAC
Found at i:36785261 original size:303 final size:296
Alignment explanation
Indices: 36784647--36785416 Score: 755
Period size: 303 Copynumber: 2.6 Consensus size: 296
36784637 CTTTTACTGT
* * * * *
36784647 CTCAACCTTTCCCTTTGTATCTTCTTGGTATCGTGTTCGCCGTTGCAGCCTTAACCTTTCCCATC
1 CTCAACCTTTCCC-TTCTCTCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCATC
* * *
36784712 GCATCTTTTTAGGTACCGGATTCGCCATCGTGACCTCAATCCTTCCCTTCATCTCTTCATGGTAT
65 ACATCTTTTTAGGTACCGGATTCACCATCGCGACCTCAATCCTTCCCTTCATCTCTTCATGGTAT
* * *
36784777 CGGGTTCGCCGTTGTGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAAGTTCGCCATTGC
130 CGGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAAGTTCACCATTGC
* *
36784842 AACCTCAACCTTTCCCTTCGTATCTTCGTGGTACCGGGTTCGCCGTTACGGCCTCAACCTTTCCC
195 AACCTCAACCTTTCCCTTCGTATCTTCGTCGTACAGGGTTCGCCGTTACGGCCTCAACCTTTCCC
* * * * * *
36784907 ATCACATCTTTTTAGGTATCGAATTCGCCGTCGCGGC
260 ATAACATCTTCTTAGGTACCGAACTCACCGTCGCGAC
36784944 CTCAATCC-TTCCCTTCATCTCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCAT
1 CTCAA-CCTTTCCCTTC-TCTCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACC--T----T
* * * * * * * *
36785008 TCCCATCACATCTTTTTAGGTACCGGGTTCACCGTTGCGGCTTCAATCTTTCCTTTTA-CATCTT
58 TCCCATCACATCTTTTTAGGTACCGGATTCACCATCGCGACCTCAATCCTTCCCTTCATC-TCTT
* * * * *
36785072 CATGGTA-CTGGGTTCATCGTTGCGGCCTTAATCTTTCCCATCACATCTTCTTAGGTATCGAGTT
122 CATGGTATC-GGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAAGTT
* * * * * *
36785136 CACCGTTGCAGCCTCAACCCTTTCTCTTCGTATCTTCGTCGTACATGGTTCGCGGTTGCGG-CTC
186 CACCATTGCAACCTCAA-CCTTTCCCTTCGTATCTTCGTCGTACAGGGTTCGCCGTTACGGCCTC
* *
36785200 AACCTTTCCCATAACATCTTCTTAGGTACC-AGGCTCACCGTTGCGAC
250 AACCTTTCCCATAACATCTTCTTAGGTACCGA-ACTCACCGTCGCGAC
* * * * * * * * *
36785247 CTCAACCTTTCCCTTCGCATCTTCATGGTACCGAATTTGTCATTACGGCCTTAACCTTTCCCATC
1 CTCAACCTTTCCCTTCTC-TCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCATC
* * ** * ** * * *
36785312 ACATCTTCTTATGTATTGG-TTCACCGTTACGGCCTCAA-CCTTTCCCTTCATATCGTT-GTGGT
65 ACATCTTTTTAGGTACCGGATTCACCATCGCGACCTCAATCC-TTCCCTTCATCTC-TTCATGGT
* * * * * *
36785374 ACCGAGTTCGCCATTGCGGCATCAACCTTTCCCATCACATCTT
128 ATCGGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTT
36785417 TTTAGGTATC
Statistics
Matches: 388, Mismatches: 67, Indels: 37
0.79 0.14 0.08
Matches are distributed among these distances:
295 1 0.00
296 66 0.17
297 71 0.18
298 2 0.01
299 1 0.00
301 1 0.00
302 6 0.02
303 203 0.52
304 37 0.10
ACGTcount: A:0.16, C:0.33, G:0.16, T:0.35
Consensus pattern (296 bp):
CTCAACCTTTCCCTTCTCTCTTCATGGTATCGAGTTCGCCGTTGCAGCCTCAACCTTTCCCATCA
CATCTTTTTAGGTACCGGATTCACCATCGCGACCTCAATCCTTCCCTTCATCTCTTCATGGTATC
GGGTTCACCGTTGCGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAAGTTCACCATTGCA
ACCTCAACCTTTCCCTTCGTATCTTCGTCGTACAGGGTTCGCCGTTACGGCCTCAACCTTTCCCA
TAACATCTTCTTAGGTACCGAACTCACCGTCGCGAC
Found at i:36785448 original size:49 final size:50
Alignment explanation
Indices: 36784388--36785502 Score: 583
Period size: 49 Copynumber: 22.5 Consensus size: 50
36784378 TTCGTGGTAC
* * * * * *
36784388 GTTCGTCGTTGCAGCCTCAACC-TT-CCTTTATATCTTCGT-GGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* *
36784435 GTTCGCCGTTGCGACCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * * * * **
36784485 ATTCACCGTCGTGACCTCAATCC-TTCCCTTTATC-TCTTCAT-GGTATTGG
1 GTTCGCCGTTGCGGCCTCAA-CCTTTCCCATCA-CATCTTCTTAGGTACCGG
* *** * * *
36784534 GTTC-CTCGTTGCGGCCTCAACCTTTCCCTTTGTATATTCGT-GGTACCAG
1 GTTCGC-CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
** * * ** ** * *
36784583 GTTTACCGTTACGGCCTCAACTTTTCCTTTCGTATCTT-TGT-GGTATCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCT-TAGGTACCGG
** * * * * *** * *
36784632 GTTCGCTTTTACTGTCTCAACCTTTCCCTTTGTATCTTCTT-GGTATCGT
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * *
36784681 GTTCGCCGTTGCAGCCTTAACCTTTCCCATCGCATCTTTTTAGGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * * * *
36784731 ATTCGCCATCGTGACCTCAATCC-TTCCCTTCATC-TCTTCAT-GGTATCGG
1 GTTCGCCGTTGCGGCCTCAA-CCTTTCCCATCA-CATCTTCTTAGGTACCGG
* * * **
36784780 GTTCGCCGTTGTGGCCTTAACCTTTCCCATCACATCTTCTTAAGTACCAA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* ** * ** *
36784830 GTTCGCCATTGCAACCTCAACCTTTCCCTTCGTATCTTCGT-GGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * *
36784879 GTTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTTTTTAGGTATCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * *
36784929 ATTCGCCGTCGCGGCCTCAATCC-TTCCCTTCATC-TCTTCAT-GGTATCGA
1 GTTCGCCGTTGCGGCCTCAA-CCTTTCCCATCA-CATCTTCTTAGGTACCGG
* *
36784978 GTTCGCCGTTGCAGCCTCAACCTTTCCCATTCCCATCACATCTTTTTAGGTACCGG
1 GTTCGCCGTTGCGGCCTCAACC--T----TTCCCATCACATCTTCTTAGGTACCGG
* * * ** * * *
36785034 GTTCACCGTTGCGGCTTCAATCTTTCCTTTTACATCTTCAT-GGTACTGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
** * * * *
36785083 GTTCATCGTTGCGGCCTTAATCTTTCCCATCACATCTTCTTAGGTATCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * ** * * **
36785133 GTTCACCGTTGCAGCCTCAACCCTTTCTCTTCGTATCTTCGT-CGTACATG
1 GTTCGCCGTTGCGGCCTCAA-CCTTTCCCATCACATCTTCTTAGGTACCGG
* * *
36785183 GTTCGCGGTTGCGG-CTCAACCTTTCCCATAACATCTTCTTAGGTACCAG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * * *
36785232 GCTCACCGTTGCGACCTCAACCTTTCCCTTCGCATCTTCAT-GGTACCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * * * **
36785281 ATTTGTCATTACGGCCTTAACCTTTCCCATCACATCTTCTTATGTA-TTG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * * * *
36785330 GTTCACCGTTACGGCCTCAACCTTTCCCTTCATATCGTT-GT-GGTACCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATC-TTCTTAGGTACCGG
* * * *
36785379 GTTCGCCATTGCGGCATCAACCTTTCCCATCACATCTTTTTAGGTATCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
* * * ** *
36785429 GCTCGCCG-TCCGGCCTCAACCCTTCCTTTAACATCTT-TTAAGGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTT-AGGTACCGG
* * *
36785478 ATTCGTCGTCGCGGCCTCAATCCTT
1 GTTCGCCGTTGCGGCCTCAA-CCTT
36785503 CCTTGTCAAA
Statistics
Matches: 797, Mismatches: 230, Indels: 78
0.72 0.21 0.07
Matches are distributed among these distances:
47 19 0.02
48 32 0.04
49 442 0.55
50 238 0.30
51 27 0.03
54 2 0.00
55 13 0.02
56 24 0.03
ACGTcount: A:0.16, C:0.32, G:0.17, T:0.35
Consensus pattern (50 bp):
GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGG
Found at i:36786419 original size:6 final size:6
Alignment explanation
Indices: 36786410--36786457 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
36786400 CGACCTCTCC
* *
36786410 TTTTCTT TTTTCT TTTCTCTT TTTTAT TTTTAT TTTTCT TTTTCT TTT
1 TTTTC-T TTTTCT TTT-TC-T TTTTCT TTTTCT TTTTCT TTTTCT TTT
36786458 CTTCTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 25 0.68
7 8 0.22
8 4 0.11
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:36786432 original size:14 final size:13
Alignment explanation
Indices: 36786410--36786466 Score: 71
Period size: 14 Copynumber: 4.3 Consensus size: 13
36786400 CGACCTCTCC
36786410 TTTTCTTTTTTCT
1 TTTTCTTTTTTCT
*
36786423 TTTCTCTTTTTTAT
1 TTT-TCTTTTTTCT
*
36786437 TTTT-ATTTTTCT
1 TTTTCTTTTTTCT
36786449 TTTTCTTTTCTTCT
1 TTTTCTTTT-TTCT
36786463 TTTT
1 TTTT
36786467 TATATTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 10 0.27
13 7 0.19
14 20 0.54
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTTTTTTCT
Found at i:36786447 original size:33 final size:34
Alignment explanation
Indices: 36786410--36786482 Score: 123
Period size: 33 Copynumber: 2.2 Consensus size: 34
36786400 CGACCTCTCC
*
36786410 TTTTCTTTTTTCTTTTC-TCTTTTTTATTTTTAT
1 TTTTCTTTTTTCTTTTCTTCTTTTTTATATTTAT
36786443 TTTTC-TTTTTCTTTTCTTCTTTTTTATATTTAT
1 TTTTCTTTTTTCTTTTCTTCTTTTTTATATTTAT
36786476 TTTTCTT
1 TTTTCTT
36786483 CATCGAATCC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
32 11 0.30
33 25 0.68
34 1 0.03
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (34 bp):
TTTTCTTTTTTCTTTTCTTCTTTTTTATATTTAT
Found at i:36786452 original size:27 final size:27
Alignment explanation
Indices: 36786416--36786482 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
36786406 CTCCTTTTCT
*
36786416 TTTTTCTTTTCTCTTTT-TT-ATTTTTA
1 TTTTTCTTTT-TCTTTTCTTCTTTTTTA
36786442 TTTTTCTTTTTCTTTTCTTCTTTTTTA
1 TTTTTCTTTTTCTTTTCTTCTTTTTTA
* *
36786469 TATTTATTTTTCTT
1 TTTTTCTTTTTCTT
36786483 CATCGAATCC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.17
26 12 0.33
27 18 0.50
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTCTTTTTCTTTTCTTCTTTTTTA
Found at i:36795329 original size:18 final size:19
Alignment explanation
Indices: 36795298--36795334 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
36795288 TTAAATTATG
36795298 TTAATTTAGATTAATTAAT
1 TTAATTTAGATTAATTAAT
*
36795317 TTAA-TTAGTTTAATTAAT
1 TTAATTTAGATTAATTAAT
36795335 ATTTTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TTAATTTAGATTAATTAAT
Found at i:36795672 original size:14 final size:14
Alignment explanation
Indices: 36795653--36795679 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36795643 GTGTGTTAAT
36795653 TTTTAATTATTTTA
1 TTTTAATTATTTTA
36795667 TTTTAATTATTTT
1 TTTTAATTATTTT
36795680 TTATTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTAATTATTTTA
Found at i:36795698 original size:18 final size:18
Alignment explanation
Indices: 36795654--36795700 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
36795644 TGTGTTAATT
36795654 TTTAATTATTT-TATTTTA
1 TTTAATT-TTTATATTTTA
* * *
36795672 ATTATTTTTTATTTTTTA
1 TTTAATTTTTATATTTTA
36795690 TTTAATTTTTA
1 TTTAATTTTTA
36795701 GATACCTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTAATTTTTATATTTTA
Found at i:36796693 original size:30 final size:30
Alignment explanation
Indices: 36796657--36796721 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
36796647 CAATTTAACA
* *
36796657 AACAAATGCATTTAAAATAGTAACAAAATT
1 AACAAATGCATCTAAAATAATAACAAAATT
*
36796687 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCATCTAAAATAATAACAAAATT
36796717 AACAA
1 AACAA
36796722 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.58, C:0.14, G:0.05, T:0.23
Consensus pattern (30 bp):
AACAAATGCATCTAAAATAATAACAAAATT
Found at i:36798541 original size:59 final size:59
Alignment explanation
Indices: 36798443--36798668 Score: 276
Period size: 59 Copynumber: 3.9 Consensus size: 59
36798433 TATGGATACC
* * * * * * *
36798443 CGGGGGCAAAATGGT-AATTTTGATGTAATCGGGGTTAAAAATGGAATATAAAAAGATT
1 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATT
* * *
36798501 CGGGGGTAAAATGGTAAATTTCGGTGAAACCGGGGTTAAAAACGGAATTTTAGAAGTTT
1 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATT
* * * * *
36798560 TGGGGGTAAAATGGTAATTTTCAGTGAAATTGGGGTTAAAAATAGAATTTTAGAAGATT
1 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATT
* * *
36798619 CGGGGGTAAAATGGTAATTTTCGGTAAAATCGGGGTT-AAAATGTAATTTT
1 CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAATGGAATTTT
36798669 GGAAAAGTTT
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
58 25 0.17
59 118 0.83
ACGTcount: A:0.36, C:0.05, G:0.28, T:0.31
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAAATTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGATT
Found at i:36798578 original size:29 final size:28
Alignment explanation
Indices: 36798546--36798639 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 28
36798536 TTAAAAACGG
36798546 AATTTTAGAAGTTTTGGGGGTAAAATGGT
1 AATTTTAGAAG-TTTGGGGGTAAAATGGT
* * *
36798575 AATTTTCAGTGAA-ATTGGGGTTAAAAATAG-
1 AATTTT-A--GAAGTTTGGGGGT-AAAATGGT
*
36798605 AATTTTAGAAGATTCGGGGGTAAAATGGT
1 AATTTTAGAAG-TTTGGGGGTAAAATGGT
36798634 AATTTT
1 AATTTT
36798640 CGGTAAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
27 3 0.06
28 6 0.12
29 19 0.37
30 14 0.27
31 6 0.12
32 3 0.06
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (28 bp):
AATTTTAGAAGTTTGGGGGTAAAATGGT
Found at i:36798653 original size:29 final size:30
Alignment explanation
Indices: 36798500--36798668 Score: 109
Period size: 30 Copynumber: 5.7 Consensus size: 30
36798490 ATAAAAAGAT
* * * *
36798500 TCGGGGGTAAAATGGTAAATTTCGGTGAAA
1 TCGGGGTTAAAATGGTAATTTTCAGTAAAA
* * **
36798530 CCGGGGTTAAAAACGG-AATTTT-AG-AAGTT
1 TCGGGGTT-AAAATGGTAATTTTCAGTAA-AA
* * *
36798559 TTGGGGGTAAAATGGTAATTTTCAGTGAAA
1 TCGGGGTTAAAATGGTAATTTTCAGTAAAA
* * *
36798589 TTGGGGTTAAAAATAG-AATTTT-AG-AAGAT
1 TCGGGGTT-AAAATGGTAATTTTCAGTAA-AA
* *
36798618 TCGGGGGTAAAATGGTAATTTTCGGTAAAA
1 TCGGGGTTAAAATGGTAATTTTCAGTAAAA
36798648 TCGGGGTTAAAAT-GTAATTTT
1 TCGGGGTTAAAATGGTAATTTT
36798669 GGAAAAGTTT
Statistics
Matches: 104, Mismatches: 25, Indels: 21
0.69 0.17 0.14
Matches are distributed among these distances:
28 14 0.13
29 35 0.34
30 40 0.38
31 15 0.14
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (30 bp):
TCGGGGTTAAAATGGTAATTTTCAGTAAAA
Found at i:36798653 original size:118 final size:117
Alignment explanation
Indices: 36798444--36798698 Score: 325
Period size: 118 Copynumber: 2.2 Consensus size: 117
36798434 ATGGATACCC
* * *
36798444 GGGGGCAAAATGGTAATTTTGATGTAATCGGGGTTAAAAATGGAATATAAAAAGATTCGGGGGTA
1 GGGGGCAAAATGGTAATTTTCATGAAATCGGGGTTAAAAATAGAATATAAAAAGATTCGGGGGTA
*
36798509 AAATGGTAAATTTCGGTGAAACCGGGGTTAAAAACGGAATTTTAGAAGTTTT
66 AAATGGTAAATTTCGGTAAAACCGGGGTTAAAAACGGAATTTTAGAAGTTTT
* * * * *
36798561 GGGGGTAAAATGGTAATTTTCAGTGAAATTGGGGTTAAAAATAGAATTTTAGAAGATTCGGGGGT
1 GGGGGCAAAATGGTAATTTTCA-TGAAATCGGGGTTAAAAATAGAATATAAAAAGATTCGGGGGT
* * * * *
36798626 AAAATGGTAATTTTCGGTAAAATCGGGGTT-AAAATGTAATTTTGGAAAAGTTTT
65 AAAATGGTAAATTTCGGTAAAACCGGGGTTAAAAACGGAATTTT--AGAAGTTTT
* *
36798680 GGGGTCGAAAT-GTAATTTT
1 GGGGGCAAAATGGTAATTTT
36798699 GGAAAAGTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
117 31 0.26
118 71 0.60
119 16 0.14
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (117 bp):
GGGGGCAAAATGGTAATTTTCATGAAATCGGGGTTAAAAATAGAATATAAAAAGATTCGGGGGTA
AAATGGTAAATTTCGGTAAAACCGGGGTTAAAAACGGAATTTTAGAAGTTTT
Found at i:36798684 original size:30 final size:30
Alignment explanation
Indices: 36798650--36798869 Score: 343
Period size: 30 Copynumber: 7.4 Consensus size: 30
36798640 CGGTAAAATC
*
36798650 GGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36798680 GGGGTCGAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36798710 AGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36798740 GGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
36798770 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
* *
36798800 AGGGTCAAAATAT-ATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
** *
36798829 GGGGTCAAAATACAATTTTGGAAAAGTTCT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
*
36798859 GGGGTCGAAAT
1 GGGGTCAAAAT
36798870 ATGATTTTTT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
29 27 0.15
30 149 0.85
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (30 bp):
GGGGTCAAAATGTAATTTTGGAAAAGTTTT
Found at i:36798684 original size:59 final size:60
Alignment explanation
Indices: 36798503--36798869 Score: 264
Period size: 59 Copynumber: 6.2 Consensus size: 60
36798493 AAAAGATTCG
* * ** * * *
36798503 GGGGT-AAAATGGTAAATTTCGGTGAAACCGGGGTTAAAAACGGAATTTT--AGAAGTTTT
1 GGGGTCAAAATGGTAATTTTCGGTAAAATTGGGGTT-AAAATGTAATTTTGGAAAAGTTTT
* * * * **
36798561 GGGGGT-AAAATGGTAATTTTCAGTGAAATTGGGGTTAAAAATAG-AATTTTAGAAGA-TTCG
1 -GGGGTCAAAATGGTAATTTTCGGTAAAATTGGGGTT-AAAAT-GTAATTTTGGAAAAGTTTT
*
36798621 GGGGT-AAAATGGTAATTTTCGGTAAAATCGGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGGTAATTTTCGGTAAAATTGGGGTTAAAATGTAATTTTGGAAAAGTTTT
* * *
36798680 GGGGTCGAAAT-GTAATTTT-GG-AAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGGTAATTTTCGGTAAAA---TTGGGGTTAAAATGTAATTTTGGAAAAGTTTT
* *
36798740 GGGGTCAAAAT-ATAATTTT-GG-AAAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGGTAATTTTCGGTAAAA---TTGGGGTTAAAATGTAATTTTGGAAAAGTTTT
* * * ** *
36798800 AGGGTCAAAAT-AT-ATTTT-GG-AAAAGTTTTGGGGTCAAAATACAATTTTGGAAAAGTTCT
1 GGGGTCAAAATGGTAATTTTCGGTAAAA---TTGGGGTTAAAATGTAATTTTGGAAAAGTTTT
*
36798859 GGGGTCGAAAT
1 GGGGTCAAAAT
36798870 ATGATTTTTT
Statistics
Matches: 270, Mismatches: 29, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
57 5 0.02
58 17 0.06
59 141 0.52
60 105 0.39
61 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.34
Consensus pattern (60 bp):
GGGGTCAAAATGGTAATTTTCGGTAAAATTGGGGTTAAAATGTAATTTTGGAAAAGTTTT
Found at i:36799235 original size:29 final size:32
Alignment explanation
Indices: 36799172--36799235 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 32
36799162 CAAATAATTA
36799172 AAAAATGCAGAAAGGACTAAATTGAAGCAAAT
1 AAAAATGCAGAAAGGACTAAATTGAAGCAAAT
* * *
36799204 AAAAATGC-GGAAGGAC-CAATTGCA-CAAAT
1 AAAAATGCAGAAAGGACTAAATTGAAGCAAAT
36799233 AAA
1 AAA
36799236 CCATTTTCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 8 0.28
30 6 0.21
31 7 0.24
32 8 0.28
ACGTcount: A:0.55, C:0.12, G:0.19, T:0.14
Consensus pattern (32 bp):
AAAAATGCAGAAAGGACTAAATTGAAGCAAAT
Found at i:36800682 original size:6 final size:6
Alignment explanation
Indices: 36800673--36800758 Score: 52
Period size: 6 Copynumber: 14.0 Consensus size: 6
36800663 ACTTTTAATG
* ** *
36800673 TTAAAT TTAATATT TTTAAT TTTTAT TT-AAT TTAAAT TCAAA- TTAAAT
1 TTAAAT TTAA-A-T TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
36800721 TTAGATAT TTAAAT TTAAA- ATAAAT CTAAAAT TTAAAT
1 TTA-A-AT TTAAAT TTAAAT TTAAAT -TTAAAT TTAAAT
36800759 AAATTAAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 12 0.19
6 34 0.54
7 8 0.13
8 9 0.14
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (6 bp):
TTAAAT
Found at i:36800730 original size:25 final size:23
Alignment explanation
Indices: 36800701--36800766 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 23
36800691 ATTTTTATTT
*
36800701 AATTTAAATTCAAATTAAATTTAGA
1 AATTTAAATT-AAATTAAATCTA-A
* *
36800726 TATTTAAATTTAAAATAAATCTAA
1 AATTTAAA-TTAAATTAAATCTAA
36800750 AATTTAAA-TAAATTAAA
1 AATTTAAATTAAATTAAA
36800767 ATCAATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 8 0.23
24 8 0.23
25 17 0.49
26 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (23 bp):
AATTTAAATTAAATTAAATCTAA
Found at i:36800754 original size:18 final size:16
Alignment explanation
Indices: 36800701--36800768 Score: 61
Period size: 17 Copynumber: 4.2 Consensus size: 16
36800691 ATTTTTATTT
36800701 AATTTAAATTCAAATT-A
1 AATTTAAA-T-AAATTAA
* *
36800718 AATTTAGAT--ATTTA
1 AATTTAAATAAATTAA
36800732 AATTTAAAATAAATCTAA
1 AATTT-AAATAAAT-TAA
36800750 AATTTAAATAAATTAA
1 AATTTAAATAAATTAA
36800766 AAT
1 AAT
36800769 CAATTTAACT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 3 0.07
14 6 0.14
15 3 0.07
16 7 0.16
17 17 0.40
18 7 0.16
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (16 bp):
AATTTAAATAAATTAA
Found at i:36801269 original size:69 final size:69
Alignment explanation
Indices: 36801174--36801955 Score: 1256
Period size: 69 Copynumber: 11.4 Consensus size: 69
36801164 GTTGCTCTTT
* * *
36801174 CTTCAATTTCAGAGATGATGACGTTGCTCTTTACTTTAA-TTCAGAGATAAAGACTTGATATCCA
1 CTTCAATTTCA-AGAGGATGACGTTGCTC-TTACTTCAATTTCAGAGATAAAGACGTGATATCCA
36801238 ACTCTA
64 ACTCTA
36801244 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGT-ATTATCC-A
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGA-TATCCAA
36801307 CTCTA
65 CTCTA
* * * * *
36801312 CTTCAGTTTCAAGGGGATGACGTTGCTCTTGCTTCAATTTCAGAGATAAGGA-TTGATATCCAAC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801376 TCTA
66 TCTA
36801380 CTTCAATTTCAAGAGGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAA
1 CTTCAATTTCAAGA-GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAA
36801445 CTCTA
65 CTCTA
* *
36801450 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAAC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801515 TCTA
66 TCTA
* *
36801519 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAAC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801584 TCTA
66 TCTA
*
36801588 CTTCAATTTCAAGAGGATGACATTGCTC-TACTTCAATTTCAGAGATAAAGACGTGATTATCCAA
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGA-TATCCAA
36801652 CTCTA
65 CTCTA
* * *
36801657 CTTCAATTTCAAGAGGATGACGTTGCTTTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-AC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801721 TCTA
66 TCTA
*
36801725 CTTCAATTTCAAG-GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801789 TCTA
66 TCTA
* *
36801793 CTTCAATTTCAAGAGGATGACGTTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-A
1 CTTCAATTTCAAGAGGATGACG-TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAA
36801857 CTCTA
65 CTCTA
* *
36801862 CTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC
1 CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
36801927 TCTA
66 TCTA
*
36801931 CTTCAATTTCAAGGGGATGACGTTG
1 CTTCAATTTCAAGAGGATGACGTTG
36801956 GTGACCTGCA
Statistics
Matches: 667, Mismatches: 33, Indels: 25
0.92 0.05 0.03
Matches are distributed among these distances:
67 50 0.07
68 183 0.27
69 331 0.50
70 103 0.15
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (69 bp):
CTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAAC
TCTA
Found at i:36813676 original size:58 final size:58
Alignment explanation
Indices: 36813603--36813727 Score: 153
Period size: 58 Copynumber: 2.2 Consensus size: 58
36813593 TGATGTAATC
* * * * *
36813603 GGGTTAAAAATGGAATTAAAAAGATTT-GGGGGTAAAATGGTAAATTTCGGTGAAACCG
1 GGGTTAAAAACGGAATTAAAAAG-TTTCGAGGGTAAAATGGTAAATTTCAGTAAAACCA
* * * *
36813661 GGGTTAAAAACGGAATTTAGAAGTTTCGAGGGTAAAATGGTAATTTTCAGTAAAATCA
1 GGGTTAAAAACGGAATTAAAAAGTTTCGAGGGTAAAATGGTAAATTTCAGTAAAACCA
36813719 GGGTTAAAA
1 GGGTTAAAA
36813728 TATAATTTTG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 3 0.05
58 54 0.95
ACGTcount: A:0.40, C:0.06, G:0.27, T:0.27
Consensus pattern (58 bp):
GGGTTAAAAACGGAATTAAAAAGTTTCGAGGGTAAAATGGTAAATTTCAGTAAAACCA
Found at i:36813777 original size:31 final size:30
Alignment explanation
Indices: 36813719--36813857 Score: 188
Period size: 30 Copynumber: 4.6 Consensus size: 30
36813709 AGTAAAATCA
*
36813719 GGGTTAAAATATAATTTTGGAAAAGTTTTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTTG
* *
36813749 GGGTCGAAATGTAATTTTGGAAAAAGTTTTG
1 GGGTCAAAATATAATTTTGG-AAAAGTTTTG
36813780 GGGTCAAAATATAATTTTGGAAAAGTTTTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTTG
* ** *
36813810 AGGTCAAAATGCAATTTTGGAAAAGTTCTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTTG
* *
36813840 GGGTCGAAATATGATTTT
1 GGGTCAAAATATAATTTT
36813858 TTGGACAATT
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
30 66 0.70
31 28 0.30
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (30 bp):
GGGTCAAAATATAATTTTGGAAAAGTTTTG
Found at i:36813789 original size:91 final size:90
Alignment explanation
Indices: 36813681--36813849 Score: 191
Period size: 91 Copynumber: 1.9 Consensus size: 90
36813671 CGGAATTTAG
* * * *
36813681 AAGTTTCGAGGGTAAAATGGTAATTTTCAGTAAAA-TCAG-GGTTAAAATATAATTTTGGAAAAG
1 AAGTTTCGAGGGTAAAAT-ATAATTTT--GGAAAAGTCAGAGGTCAAAATACAATTTTGGAAAAG
*
36813744 TTTTGGGGTCGAAATGTAATTTTGGAAA
63 TTCTGGGGTCGAAATGTAATTTTGGAAA
* ** *
36813772 AAGTTTTG-GGGTCAAAATATAATTTTGGAAAAGTTTTGAGGTCAAAATGCAATTTTGGAAAAGT
1 AAGTTTCGAGGGT-AAAATATAATTTTGGAAAAG-TCAGAGGTCAAAATACAATTTTGGAAAAGT
36813836 TCTGGGGTCGAAAT
64 TCTGGGGTCGAAAT
36813850 ATGATTTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
88 5 0.08
90 13 0.20
91 47 0.72
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (90 bp):
AAGTTTCGAGGGTAAAATATAATTTTGGAAAAGTCAGAGGTCAAAATACAATTTTGGAAAAGTTC
TGGGGTCGAAATGTAATTTTGGAAA
Found at i:36813795 original size:61 final size:60
Alignment explanation
Indices: 36813719--36813857 Score: 206
Period size: 61 Copynumber: 2.3 Consensus size: 60
36813709 AGTAAAATCA
* * * * *
36813719 GGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTCGAAATGTAATTTTGGAAAAAGTTTTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTTGAGGTCAAAATGCAATTTTGG-AAAAGTTCTG
36813780 GGGTCAAAATATAATTTTGGAAAAGTTTTGAGGTCAAAATGCAATTTTGGAAAAGTTCTG
1 GGGTCAAAATATAATTTTGGAAAAGTTTTGAGGTCAAAATGCAATTTTGGAAAAGTTCTG
* *
36813840 GGGTCGAAATATGATTTT
1 GGGTCAAAATATAATTTT
36813858 TTGGACAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.35
61 46 0.65
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (60 bp):
GGGTCAAAATATAATTTTGGAAAAGTTTTGAGGTCAAAATGCAATTTTGGAAAAGTTCTG
Found at i:36815026 original size:2 final size:2
Alignment explanation
Indices: 36815019--36815055 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
36815009 GAAACATTAA
36815019 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36815056 CATTTGGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:36815679 original size:6 final size:6
Alignment explanation
Indices: 36815670--36815761 Score: 70
Period size: 6 Copynumber: 15.8 Consensus size: 6
36815660 ACTTTTAATG
* * *
36815670 TTAAAT TTAATAT TTTAAT TT-TAT TTAAAT TTAAAT TCAAA- TTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
36815717 TTAGATAT TTAAAT TTAAA- ATAAAT CTAAA- TTAAA- -TAAAT TTAAA
1 TTA-A-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
36815762 ATCAATTTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.06
5 16 0.23
6 38 0.54
7 7 0.10
8 5 0.07
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (6 bp):
TTAAAT
Found at i:36815715 original size:41 final size:40
Alignment explanation
Indices: 36815670--36815760 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 40
36815660 ACTTTTAATG
* * ** *
36815670 TTAAATTTAATATTTTAATTTTATTTAAATTTAAATTCAAA
1 TTAAATTTAATATTTAAATTTAAAATAAATCTAAATT-AAA
36815711 TTAAATTTAGATATTTAAATTTAAAATAAATCTAAATTAAA
1 TTAAATTTA-ATATTTAAATTTAAAATAAATCTAAATTAAA
36815752 -TAAATTTAA
1 TTAAATTTAA
36815761 AATCAATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 8 0.18
41 12 0.27
42 23 0.52
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (40 bp):
TTAAATTTAATATTTAAATTTAAAATAAATCTAAATTAAA
Found at i:36817829 original size:31 final size:30
Alignment explanation
Indices: 36817773--36817859 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
36817763 AAAAATTAAA
* *
36817773 TACCAACTTAAAAAAAGTATTAAATTTATG
1 TACCAAATTAAAAAAAATATTAAATTTATG
*
36817803 TACCAAATTAAGAAAAAATATAAAATTTATG
1 TACCAAATTAA-AAAAAATATTAAATTTATG
36817834 -ACCAAATTGAAAAAAAATATTAAATT
1 TACCAAATT-AAAAAAAATATTAAATT
36817860 CAGATATCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
30 32 0.63
31 19 0.37
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.30
Consensus pattern (30 bp):
TACCAAATTAAAAAAAATATTAAATTTATG
Found at i:36823570 original size:3 final size:3
Alignment explanation
Indices: 36823564--36823607 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
36823554 TAATGTTACT
*
36823564 ATA ATA ATA ATA A-C ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36823608 GGTGTCGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 1 0.03
3 37 0.97
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:36824188 original size:11 final size:12
Alignment explanation
Indices: 36824164--36824192 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
36824154 ATTAAGTTAA
36824164 TTTAATCAAATT
1 TTTAATCAAATT
36824176 TTTAATC-AATT
1 TTTAATCAAATT
36824187 TTTAAT
1 TTTAAT
36824193 TTTGAATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTAATCAAATT
Found at i:36835095 original size:24 final size:24
Alignment explanation
Indices: 36835045--36835118 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
36835035 AGAAATAATC
*
36835045 TTTCAATTAAACTCT-TTTAATTA
1 TTTCAATTAAACTCTATTTATTTA
*
36835068 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTATTTATTTA
36835092 TTTCAATTAAACTCTATTTATTTA
1 TTTCAATTAAACTCTATTTATTTA
36835116 TTT
1 TTT
36835119 GAGTCAACTC
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 15 0.32
24 32 0.68
ACGTcount: A:0.31, C:0.12, G:0.01, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTATTTATTTA
Found at i:36842354 original size:21 final size:19
Alignment explanation
Indices: 36842330--36842370 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
36842320 ATATCCTTAA
36842330 ATGATATTTTGTAATTGTAGT
1 ATGATATTTTG-AATTG-AGT
*
36842351 ATGATGTTTTGAATTGAGT
1 ATGATATTTTGAATTGAGT
36842370 A
1 A
36842371 AACCTGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
21 10 0.53
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (19 bp):
ATGATATTTTGAATTGAGT
Found at i:36851783 original size:24 final size:24
Alignment explanation
Indices: 36851751--36851813 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
36851741 AGTTCAGTAT
36851751 GTTTACGCTCGTTAGCTAATGTAC
1 GTTTACGCTCGTTAGCTAATGTAC
*
36851775 GTTTACGCTCGTCAGCTAATGTAC
1 GTTTACGCTCGTTAGCTAATGTAC
* *
36851799 ATTTACGCTCATTAG
1 GTTTACGCTCGTTAG
36851814 TTATTCAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (24 bp):
GTTTACGCTCGTTAGCTAATGTAC
Found at i:36857062 original size:43 final size:43
Alignment explanation
Indices: 36857004--36857097 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
36856994 GCTGTAGGGT
* **
36857004 GCACACGGGCTGGCACATGGGCGTGTGGCCCAAGTCAATATAG
1 GCACACGGGCGGGCACACAGGCGTGTGGCCCAAGTCAATATAG
* *
36857047 GCACATGGGCGGGCACACAGGCGTGTGGCCCAAGTCAATATAC
1 GCACACGGGCGGGCACACAGGCGTGTGGCCCAAGTCAATATAG
*
36857090 TCACACGG
1 GCACACGG
36857098 TCTGGTACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.24, C:0.28, G:0.33, T:0.15
Consensus pattern (43 bp):
GCACACGGGCGGGCACACAGGCGTGTGGCCCAAGTCAATATAG
Found at i:36865411 original size:21 final size:21
Alignment explanation
Indices: 36865325--36865411 Score: 52
Period size: 21 Copynumber: 4.1 Consensus size: 21
36865315 AATTTGGAAA
*
36865325 TAGTACAGACTTCTATCGATAC
1 TAGTA-AGACTTCTACCGATAC
* * *
36865347 TTA-TGATAGTTCTACCGATAC
1 -TAGTAAGACTTCTACCGATAC
* * * *
36865368 AAGTAAGACATCTACCAAAAC
1 TAGTAAGACTTCTACCGATAC
*
36865389 TAGTTATG-CTTCTACCGATAC
1 TAG-TAAGACTTCTACCGATAC
36865410 TA
1 TA
36865412 AAAACTCTAG
Statistics
Matches: 46, Mismatches: 16, Indels: 6
0.68 0.24 0.09
Matches are distributed among these distances:
20 1 0.02
21 39 0.85
22 4 0.09
23 2 0.04
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (21 bp):
TAGTAAGACTTCTACCGATAC
Found at i:36866120 original size:42 final size:42
Alignment explanation
Indices: 36866064--36866333 Score: 323
Period size: 42 Copynumber: 6.4 Consensus size: 42
36866054 TTATGCTCTA
* * *
36866064 TCGAGTCATAAGTCTTCCTTTAATCATATTCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATC
* *
36866106 TCGAGACATGAGTCTTCCTTTAATTATAATCTCATTCTTATC
1 TCGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATC
* *
36866148 TCAAGACATGATTCTTCCTTTAATCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATC
*
36866190 TCGAGACATGAGTATTCCTTTAATCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATC
* * *
36866232 TCGAGACATGAGTATTCCTTTAATCAT-ATTTCCATGCTCAT-
1 TCGAGACATGAGTCTTCCTTTAATCATAATCT-CATTCTCATC
* * * *
36866273 TCCGAGTCACGAGTCTTCCATTT-ATACA-AATCCTCATGCTCAAC
1 T-CGAGACATGAGTCTTCC-TTTAAT-CATAAT-CTCATTCTCATC
*
36866317 CCGAGACATGAGTCTTC
1 TCGAGACATGAGTCTTC
36866334 TTTTTTATAC
Statistics
Matches: 199, Mismatches: 22, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
41 4 0.02
42 165 0.83
43 29 0.15
44 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.38
Consensus pattern (42 bp):
TCGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATC
Found at i:36875521 original size:16 final size:17
Alignment explanation
Indices: 36875471--36875521 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 17
36875461 AGAGAAACTA
** *
36875471 ACAAATAAAATGTAGTG
1 ACAAATAAAATAAAATG
*
36875488 ACAAATAGAAATACAATG
1 ACAAATA-AAATAAAATG
36875506 ACAAAT-AAATAAAATG
1 ACAAATAAAATAAAATG
36875522 TATGTAACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 9 0.31
17 7 0.24
18 13 0.45
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.20
Consensus pattern (17 bp):
ACAAATAAAATAAAATG
Found at i:36883717 original size:13 final size:13
Alignment explanation
Indices: 36883699--36883723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36883689 ATTGTCAATG
36883699 TAATTATAAAAGT
1 TAATTATAAAAGT
36883712 TAATTATAAAAG
1 TAATTATAAAAG
36883724 CAACTGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (13 bp):
TAATTATAAAAGT
Found at i:36887466 original size:42 final size:42
Alignment explanation
Indices: 36887420--36887683 Score: 311
Period size: 42 Copynumber: 6.3 Consensus size: 42
36887410 TCGACTCATA
*
36887420 AGTCTTCCTTTAATCATATTCTCATTCTCATCTCGAGACATG
1 AGTCTTCCTTTAATCATAATCTCATTCTCATCTCGAGACATG
*
36887462 AGTCTTCCTTTAATCATAATCTCATTCTCATCCCGAGACATG
1 AGTCTTCCTTTAATCATAATCTCATTCTCATCTCGAGACATG
* * *
36887504 AGTCTTCCTTTAATCATAATCTTATTATCAGCTCGAGACATG
1 AGTCTTCCTTTAATCATAATCTCATTCTCATCTCGAGACATG
** *
36887546 AGTCTTCCTTTAATCATAAAGTCATTCTCATCTCGAGACATA
1 AGTCTTCCTTTAATCATAATCTCATTCTCATCTCGAGACATG
* * * *
36887588 AGTCTTCCTTTAATCAT-ATTTCACTGCTCAT-TCCGAGTCACG
1 AGTCTTCCTTTAATCATAATCTCA-TTCTCATCT-CGAGACATG
* * * *
36887630 AGTCTTCCATTT-ATACA-AATCCTCATACTAAACCCGAGACATG
1 AGTCTTCC-TTTAAT-CATAAT-CTCATTCTCATCTCGAGACATG
36887673 AGTCTTCCTTT
1 AGTCTTCCTTT
36887684 TTATACATCA
Statistics
Matches: 190, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
41 5 0.03
42 156 0.82
43 26 0.14
44 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (42 bp):
AGTCTTCCTTTAATCATAATCTCATTCTCATCTCGAGACATG
Found at i:36893976 original size:42 final size:42
Alignment explanation
Indices: 36893842--36893995 Score: 148
Period size: 42 Copynumber: 3.6 Consensus size: 42
36893832 GTATCACTTG
** ** *
36893842 ATGTATAAAGGGAAGACTCATGTCTCGGGGCGAGCGCGAGATT
1 ATGTATAAA-GGAAGACTCATGTCTCGGGATGAGCATGAAATT
* * **
36893885 ATGTATAATGAAAGACTCATAACTCGGGATGAGCAT-AAGATT
1 ATGTATAAAGGAAGACTCATGTCTCGGGATGAGCATGAA-ATT
* * * *
36893927 ATATTTAAAGGAAGACTCATGTCTCGGTATGAGCATGAAACT
1 ATGTATAAAGGAAGACTCATGTCTCGGGATGAGCATGAAATT
* *
36893969 ATGTTTAAAGGAAGACTTATGTCTCGG
1 ATGTATAAAGGAAGACTCATGTCTCGG
36893996 TAAAGCATAA
Statistics
Matches: 90, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 79 0.88
43 10 0.11
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27
Consensus pattern (42 bp):
ATGTATAAAGGAAGACTCATGTCTCGGGATGAGCATGAAATT
Found at i:36893996 original size:42 final size:42
Alignment explanation
Indices: 36893896--36894007 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
36893886 TGTATAATGA
** * *
36893896 AAGACTCATAACTCGGGATGAGCATAAGATTATATTTAAAGG
1 AAGACTCATGTCTCGGTATGAGCATAAGACTATATTTAAAGG
*
36893938 AAGACTCATGTCTCGGTATGAGCATGAA-ACTATGTTTAAAGG
1 AAGACTCATGTCTCGGTATGAGCAT-AAGACTATATTTAAAGG
* *
36893980 AAGACTTATGTCTCGGTA-AAGCATAAGA
1 AAGACTCATGTCTCGGTATGAGCATAAGA
36894008 TTGTTTAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
40 2 0.03
41 6 0.10
42 51 0.84
43 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (42 bp):
AAGACTCATGTCTCGGTATGAGCATAAGACTATATTTAAAGG
Found at i:36898614 original size:30 final size:31
Alignment explanation
Indices: 36898580--36898647 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 31
36898570 CCCTATTTTA
36898580 TCCAAAAAATTTAGAATTAACCCT-AAACTT
1 TCCAAAAAATTTAGAATTAACCCTCAAACTT
** * *
36898610 TCC-AAAAATTTAGTTTTGACCCTCGAACTT
1 TCCAAAAAATTTAGAATTAACCCTCAAACTT
36898640 TCCAAAAA
1 TCCAAAAA
36898648 TTCAATTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 17 0.53
30 11 0.34
31 4 0.12
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (31 bp):
TCCAAAAAATTTAGAATTAACCCTCAAACTT
Found at i:36898648 original size:30 final size:29
Alignment explanation
Indices: 36898605--36898779 Score: 194
Period size: 30 Copynumber: 5.9 Consensus size: 29
36898595 ATTAACCCTA
36898605 AACTTTCCAAAAATTTAGTTTTGACCCTCG
1 AACTTTCCAAAAATTTA-TTTTGACCCTCG
* *
36898635 AACTTTCCAAAAATTCAATTTTGACCCTTG
1 AACTTTCCAAAAATT-TATTTTGACCCTCG
* *
36898665 AACTTTTCAAAAATTTTATTTTGACTCT-G
1 AACTTTCCAAAAA-TTTATTTTGACCCTCG
* *
36898694 AACTTTCCAAAAAATTCATTTTGACCTTCG
1 AACTTTCC-AAAAATTTATTTTGACCCTCG
*
36898724 AACTTTCCAAAAATTTGATTTTGACCC-CTT
1 AACTTTCCAAAAATTT-ATTTTGACCCTC-G
*
36898754 AACTTTCCAAAATTTTGATTTT-ACCC
1 AACTTTCCAAAAATTT-ATTTTGACCC
36898780 CATTTTTCCT
Statistics
Matches: 126, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
29 31 0.25
30 92 0.73
31 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (29 bp):
AACTTTCCAAAAATTTATTTTGACCCTCG
Found at i:36898699 original size:59 final size:58
Alignment explanation
Indices: 36898605--36898765 Score: 218
Period size: 59 Copynumber: 2.7 Consensus size: 58
36898595 ATTAACCCTA
36898605 AACTTTCCAAAAA-TTTAGTTTTGACCCTCGAACTTTCCAAAAATTCAATTTTGACCCTT-G
1 AACTTTCCAAAAATTTTA-TTTTGACCCT-GAACTTTCCAAAAATTC-ATTTTGA-CCTTCG
* *
36898665 AACTTTTCAAAAATTTTATTTTGACTCTGAACTTTCCAAAAAATTCATTTTGACCTTCG
1 AACTTTCCAAAAATTTTATTTTGACCCTGAACTTTCC-AAAAATTCATTTTGACCTTCG
* *
36898724 AACTTTCCAAAAATTTGATTTTGACCCCTTAACTTTCCAAAA
1 AACTTTCCAAAAATTTTATTTTGA-CCCTGAACTTTCCAAAA
36898766 TTTTGATTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
58 4 0.04
59 43 0.47
60 40 0.44
61 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (58 bp):
AACTTTCCAAAAATTTTATTTTGACCCTGAACTTTCCAAAAATTCATTTTGACCTTCG
Found at i:36898734 original size:89 final size:89
Alignment explanation
Indices: 36898605--36898775 Score: 249
Period size: 89 Copynumber: 1.9 Consensus size: 89
36898595 ATTAACCCTA
*
36898605 AACTTTCCAAAAATTTAGTTTTGACCCTCGAACTTTCCAAAAATTCAATTTTGA-CCCTTGAACT
1 AACTTTCCAAAAATTCAGTTTTGACCCTCGAACTTTCCAAAAATTCAATTTTGACCCCTT-AAC-
36898669 TTTCAAAAATTTT-ATTTTGACTCTG
64 TTTCAAAAATTTTGATTTTGACTCTG
* **
36898694 AACTTTCCAAAAAATTCA-TTTTGACCTTCGAACTTTCCAAAAATTTGATTTTGACCCCTTAACT
1 AACTTTCC-AAAAATTCAGTTTTGACCCTCGAACTTTCCAAAAATTCAATTTTGACCCCTTAACT
*
36898758 TTCCAAAATTTTGATTTT
65 TTCAAAAATTTTGATTTT
36898776 ACCCCATTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
88 12 0.16
89 49 0.66
90 13 0.18
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (89 bp):
AACTTTCCAAAAATTCAGTTTTGACCCTCGAACTTTCCAAAAATTCAATTTTGACCCCTTAACTT
TCAAAAATTTTGATTTTGACTCTG
Found at i:36907346 original size:50 final size:50
Alignment explanation
Indices: 36907288--36907955 Score: 454
Period size: 50 Copynumber: 13.5 Consensus size: 50
36907278 GTTATGGCCC
* * *
36907288 CAACGACGAACCCGGTACCTTAGAAGATGTGATGGGGAGGATTGAGGTTG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
* ** * * * * ** *
36907338 CAATGACGAATTTGGTACCAT-GAAGATATTAAGGGAAAGG-TTGATTC-A
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGG-AAGGATTGAGGCTG
** * * * *
36907386 CAACGGTGAACCCGATACCTTAGAAGATGTGATGGTAAAGATTGAGGCTG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
* * * * * * *
36907436 TAACGGCGAAGCTGGTACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGG-AAGGATTGAGGCTG
**
36907485 CAACGAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
** * * * * *
36907535 CAACGTTGAATCTGGTACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGG-AAGGATTGAGGCTG
* * *
36907584 CAACGGCGAACTTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCCG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
* * * * ** * **
36907634 CAATGACGAATCTGTTACCAT-GAAGACATGAAGGGAAAGG-TTGAGGCAA
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGG-AAGGATTGAGGCTG
* * **
36907683 CAAC-AGCGAACCCGATACCTTAGAAGATGTGATGGGAAATATTGAGGCTG
1 CAACGA-CGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
* * * * *
36907733 CAACGGCGAATCTGGTACAC-T-GAAGATATGAAGGGAAAGG-TTAAGG-TCG
1 CAACGACGAACCTGGTAC-CTTAGAAGATGTGATGGG-AAGGATTGAGGCT-G
* * *
36907782 CAACGTCAAACC-GGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTG
1 CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
* * * * * * *
36907831 TAACGGCGAACCTTGTACCCTAGAA-ATAAAT-ATGGGAAAGATTGAGGCCG
1 CAACGACGAACCTGGTACCTTAGAAGAT--GTGATGGGAAGGATTGAGGCTG
** *
36907881 CAAC-ATCGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTG
1 CAACGA-CGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
** * *
36907931 CAACGGTGAACCTTGTACCCTAGAA
1 CAACGACGAACCTGGTACCTTAGAA
36907956 ATAAATATGG
Statistics
Matches: 463, Mismatches: 126, Indels: 58
0.72 0.19 0.09
Matches are distributed among these distances:
47 1 0.00
48 28 0.06
49 198 0.43
50 232 0.50
51 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (50 bp):
CAACGACGAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTG
Found at i:36907530 original size:99 final size:99
Alignment explanation
Indices: 36907229--36907936 Score: 793
Period size: 99 Copynumber: 7.2 Consensus size: 99
36907219 GAAAGAGGAT
* * * ** ** * *
36907229 ATTGAGGCTGCAACGGTGAATCTGATACCTTGAAGATACAAAAAGAGAGGTT-ATGGCCCCAACG
1 ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGA-GGCCGCAACG
*
36907293 ACGAACCCGGTACCTTAGAAGATGTGATGGGGAGG
65 ACGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
* * * * * ** * *
36907328 ATTGAGGTTGCAATGACGAATTTGGTACCATGAAGATATTAAGGGAAAGGTTGA-TTCACAACGG
1 ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
* * * *
36907392 TGAACCCGATACCTTAGAAGATGTGATGGTAAAG
66 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
* *
36907426 ATTGAGGCTGTAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
1 ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
** *
36907491 AAAACCTGGTACCTTAGAAGATGTGATGGGAAGG
66 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
** *
36907525 ATTGAGGCTGCAACGTTGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
1 ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
**
36907590 CGAACTTGGTACCTTAGAAGATGTGATGGGAAGG
66 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
* * * * * **
36907624 ATTGAGGCCGCAATGACGAATCTGTTACCATGAAGACATGAAGGGAAAGGTTGAGGCAACAAC-A
1 ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
* **
36907688 GCGAACCCGATACCTTAGAAGATGTGATGGGAAAT
66 -CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
* *
36907723 ATTGAGGCTGCAACGGCGAATCTGGTA-CACTGAAGATATGAAGGGAAAGGTTAAGGTCGCAACG
1 ATTGAGGCTGCAACGGCGAATCTGGTACCA-TGAAGATATGAAGGGAAAGGTTGAGGCCGCAACG
* *
36907787 TC-AAACCGGTACCTTAGAAGATGTGATGGGAAGG
65 ACGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
* * * * * * *
36907821 ATCGAGGCTGTAACGGCGAACCTTGTACCCTAGAA-ATAAAT-ATGGGAAAGATTGAGGCCGCAA
1 ATTGAGGCTGCAACGGCGAATCTGGTACCAT-GAAGAT--ATGAAGGGAAAGGTTGAGGCCGCAA
*
36907884 C-ATCGAACCCAGTACCTTAGAAGATGTGATGGGAAGG
63 CGA-CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
*
36907921 ATCGAGGCTGCAACGG
1 ATTGAGGCTGCAACGG
36907937 TGAACCTTGT
Statistics
Matches: 511, Mismatches: 87, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
98 138 0.27
99 325 0.64
100 48 0.09
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (99 bp):
ATTGAGGCTGCAACGGCGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGA
CGAACCCGGTACCTTAGAAGATGTGATGGGAAGG
Found at i:36907800 original size:296 final size:295
Alignment explanation
Indices: 36907229--36907933 Score: 934
Period size: 296 Copynumber: 2.4 Consensus size: 295
36907219 GAAAGAGGAT
* * * ** * *
36907229 ATTGAGGCTGCAACGGTGAATCTGATACCTTGAAGATACAAAAAGAGAGGTT-ATGGCCCCAACG
1 ATTGAGGCTGCAACGGTGAATCTGGTACCATGAAGATA-TAAGGGAAAGGTTGA-GGCCGCAACG
* * *
36907293 ACGAACCCGGTACCTTAGAAGATGTGATGGGGAGGATTGAGGTTGCAATGACGAATTTGGTACCA
64 ACGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCA
* * ** * * *
36907358 TGAAGATATTAAGGGAAAGGTTGATTCACAACGGTGAACCCGATACCTTAGAAGATGTGATGGTA
129 TGAAGACATGAAGGGAAAGGTTGAGGCACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGA
* *
36907423 AAGATTGAGGCTGTAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAA
194 AAGATTGAGGCTGCAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTAAGGCCGCAA
36907488 CGAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGG
259 CGAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGG
* *
36907525 ATTGAGGCTGCAACGTTGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
1 ATTGAGGCTGCAACGGTGAATCTGGTACCATGAAGATAT-AAGGGAAAGGTTGAGGCCGCAACGA
** * *
36907590 CGAACTTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCCGCAATGACGAATCTGTTACCAT
65 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCAT
36907655 GAAGACATGAAGGGAAAGGTTGAGGCAACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGA
130 GAAGACATGAAGGGAAAGGTTGAGGC-ACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGA
* * *
36907720 AATATTGAGGCTGCAACGGCGAATCTGGTA-CACTGAAGATATGAAGGGAAAGGTTAAGGTCGCA
194 AAGATTGAGGCTGCAACGGCGAAGCTGGTACCA-TGAAGATATGAAGGGAAAGGTTAAGGCCGCA
**
36907784 ACGTCAAACC-GGTACCTTAGAAGATGTGATGGGAAGG
258 ACGAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGG
* * * * * * * *
36907821 ATCGAGGCTGTAACGGCGAACCTTGTACCCTAGAA-ATAAATATGGGAAAGATTGAGGCCGCAAC
1 ATTGAGGCTGCAACGGTGAATCTGGTACCAT-GAAGAT--ATAAGGGAAAGGTTGAGGCCGCAAC
* *
36907885 -ATCGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGCAA
63 GA-CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAA
36907934 CGGTGAACCT
Statistics
Matches: 356, Mismatches: 45, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
296 188 0.53
297 166 0.47
298 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (295 bp):
ATTGAGGCTGCAACGGTGAATCTGGTACCATGAAGATATAAGGGAAAGGTTGAGGCCGCAACGAC
GAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCATG
AAGACATGAAGGGAAAGGTTGAGGCACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGAAA
GATTGAGGCTGCAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTAAGGCCGCAACG
AAAAACCTGGTACCTTAGAAGATGTGATGGGAAGG
Found at i:36907866 original size:148 final size:147
Alignment explanation
Indices: 36907386--36907884 Score: 476
Period size: 148 Copynumber: 3.4 Consensus size: 147
36907376 GGTTGATTCA
* * * * * *
36907386 CAACGGTGAACC-CGATACCTTAGAAGATGTGATGGTAAAGATTGAGGCTGTAACGGCGAAGCTG
1 CAACGGCGAACCTCG-TACCATAGAAGATATGATGGGAAAGATTGAGGCCGCAACGGCGAA-CTG
*
36907450 GTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGAAAAACCTGGTACCTTAGAAGATGT
64 GTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACC-GGTACCTTAGAAGATGT
36907515 GATGGGAAGGATTGAGGCTG
128 GATGGGAAGGATTGAGGCTG
** * * * *
36907535 CAACGTTGAATCTGGTACCAT-GAAGATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACTTGG
1 CAACGGCGAACCTCGTACCATAGAAGATATGATGGGAAAGATTGAGGCCGCAACGGCGAAC-TGG
* * * * * * * * **
36907599 TACCTTAGAAGATGTGATGGG-AAGGATTGAGGCCGCAATGACGAATCTGTTACCAT-GAAGACA
65 TACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCGCAACGAC-AAACCGGTACCTTAGAAGATG
* **
36907662 TGAAGGGAAAGG-TTGAGGCAA
127 TGATGGG-AAGGATTGAGGCTG
* * * * *
36907683 CAACAGCGAACC-CGATACCTTAGAAGATGTGATGGGAAATATTGAGGCTGCAACGGCGAATCTG
1 CAACGGCGAACCTCG-TACCATAGAAGATATGATGGGAAAGATTGAGGCCGCAACGGCGAA-CTG
* * *
36907747 GTA-CACTGAAGATATGAAGGGAAAGGTTAAGGTCGCAACGTCAAACCGGTACCTTAGAAGATGT
64 GTACCA-TGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCGGTACCTTAGAAGATGT
*
36907811 GATGGGAAGGATCGAGGCTG
128 GATGGGAAGGATTGAGGCTG
* * *
36907831 TAACGGCGAACCTTGTACCCTAGAA-ATAAAT-ATGGGAAAGATTGAGGCCGCAAC
1 CAACGGCGAACCTCGTACCATAGAAGAT--ATGATGGGAAAGATTGAGGCCGCAAC
36907885 ATCGAACCCA
Statistics
Matches: 275, Mismatches: 59, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
147 17 0.06
148 157 0.57
149 96 0.35
150 5 0.02
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.19
Consensus pattern (147 bp):
CAACGGCGAACCTCGTACCATAGAAGATATGATGGGAAAGATTGAGGCCGCAACGGCGAACTGGT
ACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGACAAACCGGTACCTTAGAAGATGTGAT
GGGAAGGATTGAGGCTG
Found at i:36907901 original size:297 final size:296
Alignment explanation
Indices: 36907294--36907933 Score: 901
Period size: 297 Copynumber: 2.2 Consensus size: 296
36907284 GCCCCAACGA
* * *
36907294 CGAACCCGGTACCTTAGAAGATGTGATGGGGAGGATTGAGGTTGCAATGACGAATTTGGTACCAT
1 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCAT
* * ** * * *
36907359 GAAGATATTAAGGGAAAGGTTGATTCACAACGGTGAACCCGATACCTTAGAAGATGTGATGGTAA
66 GAAGACATGAAGGGAAAGGTTGAGGCACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGAA
* *
36907424 AGATTGAGGCTGTAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCGCAAC
131 AGATTGAGGCTGCAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTAAGGCCGCAAC
* ** *
36907489 GAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAACGTTGAATCTGGTACC
196 GAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGCAACGGCGAACCTGGTACC
* *
36907554 ATGAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
261 ATGAAGATATGAAGGGAAAGATTGAGGCCGCAACAG
** * *
36907590 CGAACTTGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCCGCAATGACGAATCTGTTACCAT
1 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCAT
36907655 GAAGACATGAAGGGAAAGGTTGAGGCAACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGA
66 GAAGACATGAAGGGAAAGGTTGAGGC-ACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGA
* * *
36907720 AATATTGAGGCTGCAACGGCGAATCTGGTA-CACTGAAGATATGAAGGGAAAGGTTAAGGTCGCA
130 AAGATTGAGGCTGCAACGGCGAAGCTGGTACCA-TGAAGATATGAAGGGAAAGGTTAAGGCCGCA
** * *
36907784 ACGTCAAACC-GGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGTAACGGCGAACCTTGTA
194 ACGAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGCAACGGCGAACCTGGTA
* * *
36907848 CCCTAGAA-ATAAAT-ATGGGAAAGATTGAGGCCGCAACAT
259 CCAT-GAAGAT--ATGAAGGGAAAGATTGAGGCCGCAACAG
* *
36907887 CGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGCAA
1 CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAA
36907934 CGGTGAACCT
Statistics
Matches: 302, Mismatches: 37, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
296 135 0.45
297 165 0.55
298 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (296 bp):
CGAACCCGGTACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAATGACGAATCTGGTACCAT
GAAGACATGAAGGGAAAGGTTGAGGCACAACAGCGAACCCGATACCTTAGAAGATGTGATGGGAA
AGATTGAGGCTGCAACGGCGAAGCTGGTACCATGAAGATATGAAGGGAAAGGTTAAGGCCGCAAC
GAAAAACCTGGTACCTTAGAAGATGTGATGGGAAGGATCGAGGCTGCAACGGCGAACCTGGTACC
ATGAAGATATGAAGGGAAAGATTGAGGCCGCAACAG
Found at i:36908331 original size:36 final size:37
Alignment explanation
Indices: 36908234--36908331 Score: 116
Period size: 36 Copynumber: 2.7 Consensus size: 37
36908224 AAGCTACACA
36908234 CCAATCTCTTACCCCGATCAT---GCAGATTGAAGCAT
1 CCAATCTCTTACCCCGATCATGGGGCAGATTGAA-CAT
**
36908269 CCAATCTCTTACCCTAATCA-GAGGGCAGATTGAA-AT
1 CCAATCTCTTACCCCGATCATG-GGGCAGATTGAACAT
*
36908305 TCAATCTCTTACCCCGATCATGGGGCA
1 CCAATCTCTTACCCCGATCATGGGGCA
36908332 ATTTTGAAGC
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
35 18 0.34
36 24 0.45
37 1 0.02
38 10 0.19
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (37 bp):
CCAATCTCTTACCCCGATCATGGGGCAGATTGAACAT
Found at i:36910203 original size:29 final size:30
Alignment explanation
Indices: 36910171--36910319 Score: 194
Period size: 30 Copynumber: 5.0 Consensus size: 30
36910161 AAATTCAAAA
* *
36910171 TTGACCCCCAAAC-TTCCCAAAATTT-AGTT
1 TTGACCCCCGAACTTTCCAAAAATTTGA-TT
* *
36910200 TTGACCCTCGAACTTTTCAAAAATTTGATT
1 TTGACCCCCGAACTTTCCAAAAATTTGATT
*
36910230 TTGACCCCTGAACTTTCCAAAAATTTGATT
1 TTGACCCCCGAACTTTCCAAAAATTTGATT
*
36910260 TTGACCCCTGAACTTTCCAAAAATTTGATT
1 TTGACCCCCGAACTTTCCAAAAATTTGATT
* * *
36910290 TTGACCCTCGAACTTTTCAAAACTTTGATT
1 TTGACCCCCGAACTTTCCAAAAATTTGATT
36910320 CTACCCCATT
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
29 11 0.10
30 95 0.89
31 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (30 bp):
TTGACCCCCGAACTTTCCAAAAATTTGATT
Found at i:36910652 original size:16 final size:16
Alignment explanation
Indices: 36910631--36910661 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36910621 ATGCTACTCA
36910631 TATTTTTTATTTTTTT
1 TATTTTTTATTTTTTT
36910647 TATTTTTTATTTTTT
1 TATTTTTTATTTTTT
36910662 GCAAAATCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
TATTTTTTATTTTTTT
Found at i:36915513 original size:16 final size:16
Alignment explanation
Indices: 36915484--36915518 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36915474 AATAAAAACT
36915484 TCCCTTCCCTTCTCCC
1 TCCCTTCCCTTCTCCC
36915500 TCCCTCTCCC-TCTCCC
1 TCCCT-TCCCTTCTCCC
36915516 TCC
1 TCC
36915519 ATCTTATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (16 bp):
TCCCTTCCCTTCTCCC
Found at i:36917766 original size:19 final size:18
Alignment explanation
Indices: 36917738--36917785 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
36917728 GACACGCCAG
*
36917738 TAAATAATTTTAAAATTAT
1 TAAATTATTTTAAAA-TAT
36917757 TAAATTATTTTTTAAAATAT
1 TAAATTA--TTTTAAAATAT
*
36917777 AAAATTATT
1 TAAATTATT
36917786 GAAATTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 6 0.24
20 9 0.36
21 8 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATTATTTTAAAATAT
Found at i:36917781 original size:20 final size:21
Alignment explanation
Indices: 36917745--36917785 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
36917735 CAGTAAATAA
*
36917745 TTTTAAAATTATTAAATTATT
1 TTTTAAAATTATAAAATTATT
36917766 TTTTAAAA-TATAAAATTATT
1 TTTTAAAATTATAAAATTATT
36917786 GAAATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTTAAAATTATAAAATTATT
Found at i:36917805 original size:28 final size:28
Alignment explanation
Indices: 36917743--36917806 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
36917733 GCCAGTAAAT
*
36917743 AATTTTAAAATTATTAAATTATTTTTTAA
1 AATTATAAAATTATTAAATTA-TTTTTAA
36917772 AA-TATAAAATTATTGAAATTA-TTTTAA
1 AATTATAAAATTATT-AAATTATTTTTAA
36917799 AATTATAA
1 AATTATAA
36917807 TCATCCCCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 8 0.25
28 16 0.50
29 8 0.25
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
AATTATAAAATTATTAAATTATTTTTAA
Found at i:36918741 original size:11 final size:11
Alignment explanation
Indices: 36918725--36918757 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
36918715 GATAATGAGT
36918725 ATAATTTTAAA
1 ATAATTTTAAA
36918736 ATAATTTT--A
1 ATAATTTTAAA
36918745 ATAATTTTAAA
1 ATAATTTTAAA
36918756 AT
1 AT
36918758 CATTGTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATAATTTTAAA
Found at i:36918772 original size:20 final size:20
Alignment explanation
Indices: 36918725--36918763 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36918715 GATAATGAGT
*
36918725 ATAATTTTAAAATAATTTTA
1 ATAATTTTAAAATAATTGTA
*
36918745 ATAATTTTAAAATCATTGT
1 ATAATTTTAAAATAATTGT
36918764 CATATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
ATAATTTTAAAATAATTGTA
Found at i:36919078 original size:15 final size:16
Alignment explanation
Indices: 36919058--36919091 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
36919048 ATATAATCAT
36919058 ATTATTGTAATT-TAA
1 ATTATTGTAATTATAA
36919073 ATTATTGTAATTATAA
1 ATTATTGTAATTATAA
36919089 ATT
1 ATT
36919092 TGAGTATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (16 bp):
ATTATTGTAATTATAA
Found at i:36922237 original size:29 final size:30
Alignment explanation
Indices: 36922184--36922253 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
36922174 ATACTAAAAT
*
36922184 TATATATGAACTATAATTTAATGTGTAATTA
1 TATATATGAACTATAATTT-ATGTGCAATTA
* *
36922215 TATATATGAACTTTAATTT-TGTGCAATTG
1 TATATATGAACTATAATTTATGTGCAATTA
*
36922244 TATACATGAA
1 TATATATGAA
36922254 ATTTTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 17 0.49
31 18 0.51
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (30 bp):
TATATATGAACTATAATTTATGTGCAATTA
Found at i:36949308 original size:11 final size:11
Alignment explanation
Indices: 36949294--36949318 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36949284 TTTGGTTTGG
36949294 TTTTGAAATGT
1 TTTTGAAATGT
36949305 TTTTGAAATGT
1 TTTTGAAATGT
36949316 TTT
1 TTT
36949319 AAGTAGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTTGAAATGT
Found at i:36953607 original size:6 final size:6
Alignment explanation
Indices: 36953596--36953640 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
36953586 AACAAAACAT
36953596 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAG
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAG
36953641 AGAACCTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:36954530 original size:18 final size:18
Alignment explanation
Indices: 36954507--36954549 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
36954497 AAATATATTT
36954507 TTAATTAAATAGATTT-AA
1 TTAATTAAA-AGATTTAAA
36954525 TTAATTAAAAGATTTAAA
1 TTAATTAAAAGATTTAAA
36954543 TTAATTA
1 TTAATTA
36954550 CACATTGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TTAATTAAAAGATTTAAA
Done.