Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 185 of 193
Found at i:57636458 original size:30 final size:29
Alignment explanation
Indices: 57636375--57636510 Score: 102
Period size: 29 Copynumber: 4.6 Consensus size: 29
57636365 CCGTTTTAAT
* *
57636375 CCCGATTTCACCAAAAATTATATTTTTC-C
1 CCCGATTTTA-CAAAAATTCTATTTTTCAC
* *
57636404 CCCAAACTTTT-C-AAAATTCTATTTTTAAC
1 CCC-GA-TTTTACAAAAATTCTATTTTTCAC
*
57636433 CCCGATTTTACTAAAAATTAC-ATTTTTCCC
1 CCCGATTTTAC-AAAAATT-CTATTTTTCAC
* *
57636463 CCCGAACTTT-CCAAAATTCTATTTTTCAC
1 CCCG-ATTTTACAAAAATTCTATTTTTCAC
*
57636492 CCCGATTTCACCAAAAATT
1 CCCGATTTTA-CAAAAATT
57636511 ACATGTCTCC
Statistics
Matches: 83, Mismatches: 13, Indels: 21
0.71 0.11 0.18
Matches are distributed among these distances:
27 4 0.05
28 19 0.23
29 26 0.31
30 26 0.31
31 8 0.10
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.38
Consensus pattern (29 bp):
CCCGATTTTACAAAAATTCTATTTTTCAC
Found at i:57636458 original size:58 final size:59
Alignment explanation
Indices: 57636368--57636762 Score: 335
Period size: 59 Copynumber: 6.7 Consensus size: 59
57636358 TAATATCCCG
* * *
57636368 TTTTAATCCCGATTTCACCAAAAATTA-TATTTTTCCCCCAAACTTTTCAAAATTCTAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTTCCCCCGAACTTTTCAAAATTCTAT
* * *
57636426 TTTTAACCCCGATTTTACTAAAAATTA-CATTTTTCCCCCCGAACTTTCCAAAATTCTAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTT-CCCCCGAACTTTTCAAAATTCTAT
* * * * * *
57636485 TTTTCACCCCGATTTCACCAAAAATTA-CATGTCTCCCCCTGAACTTTCCAAAATCCCAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTTCCCCC-GAACTTTTCAAAATTCTAT
* * * * *
57636544 TTTT-ACCTCGATTTTACCAAAAATTACCATTGTATT--CCTGAACTTTTTAAAATTTTAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATT-T-TTCCCCCGAACTTTTCAAAATTCTAT
* * * * *
57636602 TTTTGACCTCGATTTTATCC-AAAATTACCATTTTACCCCCCGAAC-TTTCTAAAATTCCAT
1 TTTTAACCCCGATTTCA-CCAAAAATTACCATTTT-TCCCCCGAACTTTTC-AAAATTCTAT
* * * ** *
57636662 TTTAAACCCCTATTTCACC-AAAATTACCA-TTTTACCCTTAAATTTTCTAAAATT-TCAT
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTTCCCCCGAACTTTTC-AAAATTCT-AT
* * * * *
57636720 TTTAAATCCCGATTTCACCAAAAATTATCATTTTGCCCTCGAA
1 TTTTAACCCCGATTTCACCAAAAATTACCATTTTTCCCCCGAA
57636763 AGTCTAAAAT
Statistics
Matches: 275, Mismatches: 47, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
57 6 0.02
58 107 0.39
59 125 0.45
60 36 0.13
61 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.04, T:0.39
Consensus pattern (59 bp):
TTTTAACCCCGATTTCACCAAAAATTACCATTTTTCCCCCGAACTTTTCAAAATTCTAT
Found at i:57636495 original size:29 final size:29
Alignment explanation
Indices: 57636388--57636496 Score: 107
Period size: 29 Copynumber: 3.8 Consensus size: 29
57636378 GATTTCACCA
* * *
57636388 AAAATTATATTTTTC-CCCCAAACTTTTC
1 AAAATTCTATTTTTCACCCCGAACTTTCC
* * *
57636416 AAAATTCTATTTTTAACCCCG-ATTTTACTA
1 AAAATTCTATTTTTCACCCCGAACTTT-C-C
*
57636446 AAAATTAC-ATTTTTCCCCCCGAACTTTCC
1 AAAATT-CTATTTTTCACCCCGAACTTTCC
57636475 AAAATTCTATTTTTCACCCCGA
1 AAAATTCTATTTTTCACCCCGA
57636497 TTTCACCAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
28 18 0.28
29 23 0.36
30 18 0.28
31 5 0.08
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.39
Consensus pattern (29 bp):
AAAATTCTATTTTTCACCCCGAACTTTCC
Found at i:57636538 original size:29 final size:28
Alignment explanation
Indices: 57636388--57636547 Score: 96
Period size: 29 Copynumber: 5.5 Consensus size: 28
57636378 GATTTCACCA
* * *
57636388 AAAATTATATTTTTCCCCCAAACTTTTC
1 AAAATTACATTTTTCCCCCGAACTTTCC
* * *
57636416 AAAATT-CTATTTTTAACCCCG-ATTTTACTA
1 AAAATTAC-ATTTTT-CCCCCGAACTTT-C-C
57636446 AAAATTACATTTTTCCCCCCGAACTTTCC
1 AAAATTACATTTTT-CCCCCGAACTTTCC
57636475 AAAATT-CTATTTTTCACCCCG-A-TTTCACC
1 AAAATTAC-ATTTTTC-CCCCGAACTTT--CC
* *
57636504 AAAAATTACATGTCTCCCCCTGAACTTTCC
1 -AAAATTACATTTTTCCCCC-GAACTTTCC
**
57636534 AAAATCCCATTTTT
1 AAAATTACATTTTT
57636548 ACCTCGATTT
Statistics
Matches: 101, Mismatches: 16, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
27 3 0.03
28 19 0.19
29 37 0.37
30 32 0.32
31 7 0.07
32 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (28 bp):
AAAATTACATTTTTCCCCCGAACTTTCC
Found at i:57636587 original size:117 final size:113
Alignment explanation
Indices: 57636368--57636762 Score: 341
Period size: 117 Copynumber: 3.4 Consensus size: 113
57636358 TAATATCCCG
* * * * *
57636368 TTTTAATCCCGATTTCACCAAAAATTATATTTTTCCCCCAAACTTTTCAAAATTCTATTTTTAAC
1 TTTTAACCCCGATTTCACCAAAAATTACA-TTTTCCCCCGAACTTTCCAAAATTCCATTTTT-AC
* * *
57636433 CCCGATTTTACTAAAAATTA-CATTT-TTCCCCCCGAACTTTCCAAAATTCTAT
64 CCCGATTTTACCAAAAATTACCATTTATT---CCTGAACTTTCTAAAATT-TAT
* * *
57636485 TTTTCACCCCGATTTCACCAAAAATTACATGTCTCCCCCTGAACTTTCCAAAATCCCATTTTTAC
1 TTTTAACCCCGATTTCACCAAAAATTACAT-TTTCCCCC-GAACTTTCCAAAATTCCATTTTTAC
* *
57636550 CTCGATTTTACCAAAAATTACCATTGTATTCCTGAACTTTTTAAAATTTTAT
64 CCCGATTTTACCAAAAATTACCATT-TATTCCTGAACTTTCTAAAA-TTTAT
* * * *
57636602 TTTTGACCTCGATTTTATCC-AAAATTACCATTTTACCCCCCGAACTTTCTAAAATTCCATTTTA
1 TTTTAACCCCGATTTCA-CCAAAAATTA-CATTTT--CCCCCGAACTTTCCAAAATTCCATTTT-
* * * * * *
57636666 AACCCCTATTTCACC-AAAATTACCATTT-TACCCTTAAATTTTCTAAAATTTCAT
61 TACCCCGATTTTACCAAAAATTACCATTTAT-TCC-TGAACTTTCTAAAATTT-AT
* * *
57636720 TTTAAATCCCGATTTCACCAAAAATTATCATTTTGCCCTCGAA
1 TTTTAACCCCGATTTCACCAAAAATTA-CATTTT-CCCCCGAA
57636763 AGTCTAAAAT
Statistics
Matches: 228, Mismatches: 35, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
116 2 0.01
117 107 0.47
118 100 0.44
119 17 0.07
120 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.04, T:0.39
Consensus pattern (113 bp):
TTTTAACCCCGATTTCACCAAAAATTACATTTTCCCCCGAACTTTCCAAAATTCCATTTTTACCC
CGATTTTACCAAAAATTACCATTTATTCCTGAACTTTCTAAAATTTAT
Found at i:57636684 original size:29 final size:29
Alignment explanation
Indices: 57636652--57636742 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
57636642 CGAACTTTCT
57636652 AAAATTCCATTTTAAACCCCTATTTCACC
1 AAAATTCCATTTTAAACCCCTATTTCACC
* * *
57636681 AAAATTACCATTTT--ACCCTTAAATTT-TCT
1 AAAATT-CCATTTTAAACCCCT--ATTTCACC
* * *
57636710 AAAATTTCATTTTAAATCCCGATTTCACC
1 AAAATTCCATTTTAAACCCCTATTTCACC
57636739 AAAA
1 AAAA
57636743 ATTATCATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
28 15 0.32
29 18 0.38
30 14 0.30
ACGTcount: A:0.37, C:0.24, G:0.01, T:0.37
Consensus pattern (29 bp):
AAAATTCCATTTTAAACCCCTATTTCACC
Found at i:57636769 original size:58 final size:57
Alignment explanation
Indices: 57636490--57636782 Score: 169
Period size: 58 Copynumber: 5.0 Consensus size: 57
57636480 TCTATTTTTC
** * * * ** *
57636490 ACCCCGATTTCACCAAAAATTA-CATGTCTCCCCCTGAACTTTCCAAAATCCCATTTT-T
1 ACCCCGATTTCACC-AAAATTACCAT-T-TTACCCTGAAATGTCTAAAATTACATTTTAA
* * * * * * * ** **
57636548 ACCTCGATTTTACCAAAAATTACCATTGTATTCCTGAACTTTTTAAAATTTTATTTTTG
1 ACCCCGATTTCACC-AAAATTACCATTTTA-CCCTGAAATGTCTAAAATTACATTTTAA
* * * * * *
57636607 ACCTCGATTTTATCCAAAATTACCATTTTACCCCCCGAACTTTCTAAAATTCCATTTTAA
1 ACCCCGATTTCA-CCAAAATTACCATTTTA--CCCTGAAATGTCTAAAATTACATTTTAA
* * * *
57636667 ACCCCTATTTCACCAAAATTACCATTTTACCCTTAAATTTTCTAAAATTTCATTTTAA
1 ACCCCGATTTCACCAAAATTACCATTTTACCCTGAAA-TGTCTAAAATTACATTTTAA
* * *
57636725 ATCCCGATTTCACCAAAAATTATCATTTTGCCCTCGAAA-GTCTAAAATTACTATTTTA
1 ACCCCGATTTCACC-AAAATTACCATTTTACCCT-GAAATGTCTAAAATTAC-ATTTTA
57636783 TCCCCGGGTA
Statistics
Matches: 191, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
57 5 0.03
58 82 0.43
59 69 0.36
60 35 0.18
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.38
Consensus pattern (57 bp):
ACCCCGATTTCACCAAAATTACCATTTTACCCTGAAATGTCTAAAATTACATTTTAA
Found at i:57649398 original size:199 final size:200
Alignment explanation
Indices: 57648895--57649614 Score: 1171
Period size: 199 Copynumber: 3.6 Consensus size: 200
57648885 GTAGTTCAAC
* * * * *
57648895 AAAAC-AGTGAGGCGGTAATCTTCCTGATGAGATACAAAGAAGTATACCAACTCAACGCTCAATG
1 AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
* * *
57648959 CGAACAAATTTTCAAACCCAGCTTCTTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAA-GG
66 CGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGG
*
57649023 TTAGCTTCTTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
131 TTAGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
57649088 GAATT
196 GAATT
*
57649093 AAAATAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
1 AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
57649158 CGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGG
66 CGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGG
57649223 TTAGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
131 TTAGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
57649288 GAATT
196 GAATT
57649293 AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
1 AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
* * * *
57649358 CGAGCAAAT-TTCGAACCCAACTTCCTGATGAGACACTGAGAGGTAGGTCGAAGCAATAAAATGG
66 CGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGG
* * *
57649422 TTAACTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGGCTTCCTGAGGAGATCC-GAGAAGC
131 TTAGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
57649486 GAATT
196 GAATT
* *
57649491 AAAACAAGTGAGGCGGTCATCTTCCTAATGAGATACA-ACGAAGAATACCAACTCAACGCTCAAC
1 AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGA-GAAGAATACCAACTCAACGCTCAAC
* * * * *
57649555 GCGAGCAAATCTTCGAATCCAGCTTCTTGATGAGACACTGAGAAGTAGGTCAAAGTCAAT
65 GCGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAG-CAAT
57649615 GAAACTAATG
Statistics
Matches: 492, Mismatches: 25, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
197 1 0.00
198 86 0.17
199 257 0.52
200 148 0.30
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (200 bp):
AAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACG
CGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGG
TTAGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGC
GAATT
Found at i:57650020 original size:17 final size:17
Alignment explanation
Indices: 57649998--57650039 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
57649988 CTAAATTTTT
*
57649998 TTTAAACTTAATATAAA
1 TTTAAACTTAAAATAAA
*
57650015 TTTAAATTTAAAATAAA
1 TTTAAACTTAAAATAAA
*
57650032 TATAAACT
1 TTTAAACT
57650040 AAATGTCCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTAAACTTAAAATAAA
Found at i:57650496 original size:26 final size:27
Alignment explanation
Indices: 57650433--57650526 Score: 86
Period size: 27 Copynumber: 3.5 Consensus size: 27
57650423 ACCCAACTCA
* * *
57650433 TGAAGATCAATAGAAAAACCCA-TCTT
1 TGAAAATCAATACACAAACCCATTCTT
*
57650459 TGAAAACCCAATACACAAA-CCATTCTT
1 TGAAAA-TCAATACACAAACCCATTCTT
* *
57650486 TGAAAATCAATAGACAGAACCCATT-AT
1 TGAAAATCAATACACA-AACCCATTCTT
*
57650513 GGAAAATCAATACA
1 TGAAAATCAATACA
57650527 TCGTCCATTC
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
26 16 0.29
27 34 0.62
28 5 0.09
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (27 bp):
TGAAAATCAATACACAAACCCATTCTT
Found at i:57651943 original size:29 final size:29
Alignment explanation
Indices: 57651894--57652113 Score: 114
Period size: 29 Copynumber: 7.5 Consensus size: 29
57651884 TTTGACCCAA
* **
57651894 AAACTTCCCAAAATTATATTTTTACCCCC
1 AAACTTTCCAAAATTCCATTTTTACCCCC
* *
57651923 AAACTTTCCAAAATCCCA-TTTTA-ACCC
1 AAACTTTCCAAAATTCCATTTTTACCCCC
** * *
57651950 TGA-TTTCACCAAAAATTACATTTTTACCCCT
1 AAACTTT--CC-AAAATTCCATTTTTACCCCC
* * *
57651981 AAACTTTTCAAAATTCCATTTTTAACCTC
1 AAACTTTCCAAAATTCCATTTTTACCCCC
*
57652010 --ACTTTTACCAAAAATTACATTTTTACCCCC
1 AAAC-TTT-CC-AAAATTCCATTTTTACCCCC
* *
57652040 GAACTTTCCAAAA-TCCAATTTTTAACCCC
1 AAACTTTCCAAAATTCC-ATTTTTACCCCC
* * *
57652069 -GATTTTACCCAAAATTACCA-TTTTACCCCT
1 AAACTTT--CCAAAATT-CCATTTTTACCCCC
* *
57652099 AAATTTTCTAAAATT
1 AAACTTTCCAAAATT
57652114 TTATTTTAAA
Statistics
Matches: 144, Mismatches: 30, Indels: 34
0.69 0.14 0.16
Matches are distributed among these distances:
26 3 0.02
27 6 0.04
28 16 0.11
29 60 0.42
30 39 0.27
31 13 0.09
32 7 0.05
ACGTcount: A:0.35, C:0.28, G:0.01, T:0.36
Consensus pattern (29 bp):
AAACTTTCCAAAATTCCATTTTTACCCCC
Found at i:57651965 original size:58 final size:59
Alignment explanation
Indices: 57651903--57652152 Score: 281
Period size: 59 Copynumber: 4.2 Consensus size: 59
57651893 AAAACTTCCC
* *
57651903 AAAATTATATTTTTACCCCCAAACTTTCCAAAATCCCA-TTTTAACCCTGATTTCACCA
1 AAAATTACATTTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACCA
* * * * *
57651961 AAAATTACATTTTTACCCCTAAACTTTTCAAAATTCCATTTTTAACCTC-ACTTTTACCA
1 AAAATTACATTTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCCGA-TTTCACCA
* * * *
57652020 AAAATTACATTTTTACCCCCGAACTTTCCAAAATCCAATTTTTAACCCCGATTTTACCC
1 AAAATTACATTTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACCA
* * * *** *
57652079 AAAATTACCA-TTTTACCCCTAAATTTTCTAAAATTTTATTTTAAACCCCGATTTCACCAA
1 AAAATTA-CATTTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC-A
57652139 AAAATTACCATTTT
1 AAAATTA-CATTTT
57652153 GCCCTCAAAA
Statistics
Matches: 162, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
58 35 0.22
59 111 0.69
60 13 0.08
61 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (59 bp):
AAAATTACATTTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACCA
Found at i:57651993 original size:30 final size:29
Alignment explanation
Indices: 57651959--57652052 Score: 93
Period size: 30 Copynumber: 3.2 Consensus size: 29
57651949 CTGATTTCAC
57651959 CAAAAATTACATTTTTACCCCTAAACTTTT
1 CAAAAATTACATTTTTACCCCT-AACTTTT
* * *
57651989 C-AAAATTCCATTTTTA-ACCTCACTTTT
1 CAAAAATTACATTTTTACCCCTAACTTTT
* *
57652016 ACCAAAAATTACATTTTTACCCCCGAACTTTC
1 --CAAAAATTACATTTTTA-CCCCTAACTTTT
57652048 CAAAA
1 CAAAA
57652053 TCCAATTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
27 6 0.12
28 3 0.06
29 15 0.29
30 20 0.39
32 7 0.14
ACGTcount: A:0.36, C:0.27, G:0.01, T:0.36
Consensus pattern (29 bp):
CAAAAATTACATTTTTACCCCTAACTTTT
Found at i:57652093 original size:30 final size:31
Alignment explanation
Indices: 57651989--57652092 Score: 96
Period size: 30 Copynumber: 3.5 Consensus size: 31
57651979 CTAAACTTTT
*
57651989 CAAAATT-CCATTTTTAACCTC-ACTTTTACC
1 CAAAATTACCATTTTTAACCCCGA-TTTTACC
* * *
57652019 AAAAATTA-CATTTTTACCCCCGAACTTT--C
1 CAAAATTACCATTTTTAACCCCG-ATTTTACC
57652048 CAAAA-T-CCAATTTTTAACCCCGATTTTACC
1 CAAAATTACC-ATTTTTAACCCCGATTTTACC
57652078 CAAAATTACCATTTT
1 CAAAATTACCATTTT
57652093 ACCCCTAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
28 6 0.10
29 17 0.29
30 23 0.40
31 9 0.16
32 3 0.05
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.37
Consensus pattern (31 bp):
CAAAATTACCATTTTTAACCCCGATTTTACC
Found at i:57652179 original size:60 final size:59
Alignment explanation
Indices: 57651940--57652180 Score: 174
Period size: 59 Copynumber: 4.1 Consensus size: 59
57651930 CCAAAATCCC
* ** *
57651940 ATTTT-AACCCTGATTTCACCAAAAATTA-CATTTTTACCCCTAAACTTTTC-AAAATTCC
1 ATTTTAAACCCCGATTTCACCAAAAATTACCA-TTTTACCCCTAAA-TAGTCTAAAATTCT
* * * * * * * * *
57651998 ATTTTTAACCTC-ACTTTTACCAAAAATTA-CATTTTTACCCCCGAACT-TTCCAAAATCCA
1 ATTTTAAACCCCGA-TTTCACCAAAAATTACCA-TTTTA-CCCCTAAATAGTCTAAAATTCT
* * * ** *
57652057 ATTTTTAACCCCGATTTTACCCAAAATTACCATTTTACCCCTAAATTTTCTAAAATTTT
1 ATTTTAAACCCCGATTTCACCAAAAATTACCATTTTACCCCTAAATAGTCTAAAATTCT
*
57652116 ATTTTAAACCCCGATTTCACCAAAAAATTACCATTTT-GCCCTCAAA-AGTCTAAAATTACT
1 ATTTTAAACCCCGATTTCACC-AAAAATTACCATTTTACCCCT-AAATAGTCTAAAATT-CT
57652176 ATTTT
1 ATTTT
57652181 GTCCCCGAGT
Statistics
Matches: 151, Mismatches: 22, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
58 16 0.11
59 103 0.68
60 32 0.21
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.38
Consensus pattern (59 bp):
ATTTTAAACCCCGATTTCACCAAAAATTACCATTTTACCCCTAAATAGTCTAAAATTCT
Found at i:57655147 original size:80 final size:80
Alignment explanation
Indices: 57655014--57655195 Score: 364
Period size: 80 Copynumber: 2.3 Consensus size: 80
57655004 AGGATCTATG
57655014 ATATTTCATCTTAGATAGATGGATTTGCTTTAAGATCCTTCTAACTTGATATTGAAGAAAATAAT
1 ATATTTCATCTTAGATAGATGGATTTGCTTTAAGATCCTTCTAACTTGATATTGAAGAAAATAAT
57655079 TTTATATGTAATTTT
66 TTTATATGTAATTTT
57655094 ATATTTCATCTTAGATAGATGGATTTGCTTTAAGATCCTTCTAACTTGATATTGAAGAAAATAAT
1 ATATTTCATCTTAGATAGATGGATTTGCTTTAAGATCCTTCTAACTTGATATTGAAGAAAATAAT
57655159 TTTATATGTAATTTT
66 TTTATATGTAATTTT
57655174 ATATTTCATCTTAGATAGATGG
1 ATATTTCATCTTAGATAGATGG
57655196 TCATATTCGG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 102 1.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (80 bp):
ATATTTCATCTTAGATAGATGGATTTGCTTTAAGATCCTTCTAACTTGATATTGAAGAAAATAAT
TTTATATGTAATTTT
Found at i:57659755 original size:19 final size:18
Alignment explanation
Indices: 57659728--57659767 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
57659718 ATTTGTTTTT
**
57659728 TTTTATTTTCGAACTAAA
1 TTTTATTTTAAAACTAAA
57659746 TTTTATTTTTAAAACTAAA
1 TTTTA-TTTTAAAACTAAA
57659765 TTT
1 TTT
57659768 GGGTTTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTTTAAAACTAAA
Found at i:57663701 original size:16 final size:17
Alignment explanation
Indices: 57663669--57663701 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
57663659 TACTTCTAAT
*
57663669 AAATATTTTTGAAATAA
1 AAATATTCTTGAAATAA
57663686 AAATATTCTT-AAATAA
1 AAATATTCTTGAAATAA
57663702 TTATTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
AAATATTCTTGAAATAA
Found at i:57683942 original size:24 final size:25
Alignment explanation
Indices: 57683888--57683942 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
57683878 GTTGCAATTG
*
57683888 TATAAAAATAAAATAATTATTACAT
1 TATAAAAATAAAATAATTATGACAT
* *
57683913 T-CAAAAATAAAATATTTATGAC-T
1 TATAAAAATAAAATAATTATGACAT
57683936 TATAAAA
1 TATAAAA
57683943 TTTGAAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 2 0.08
24 22 0.88
25 1 0.04
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (25 bp):
TATAAAAATAAAATAATTATGACAT
Found at i:57700978 original size:16 final size:15
Alignment explanation
Indices: 57700944--57700999 Score: 64
Period size: 16 Copynumber: 3.9 Consensus size: 15
57700934 TTGTAGATTC
57700944 TAAT-TTATTTTT--
1 TAATATTATTTTTAA
57700956 TAATATTATTTTTAA
1 TAATATTATTTTTAA
*
57700971 TAAATATTATTTATAA
1 T-AATATTATTTTTAA
*
57700987 TATTATTATTTTT
1 TAATATTATTTTT
57701000 CACTCCTGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.11
13 8 0.22
15 11 0.30
16 14 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TAATATTATTTTTAA
Found at i:57702891 original size:42 final size:42
Alignment explanation
Indices: 57702844--57702927 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
57702834 AAAAAGAGTT
*
57702844 GTTTATGAGTGTTATTT-AAGAATAAAATTATATTTAGGTTTA
1 GTTTATAAGTGTT-TTTGAAGAATAAAATTATATTTAGGTTTA
*
57702886 GTTTATAAGTGTTTTTGAAGAATAAAATTATATTTGGGTTTA
1 GTTTATAAGTGTTTTTGAAGAATAAAATTATATTTAGGTTTA
57702928 AAAATATTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 3 0.08
42 36 0.92
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.48
Consensus pattern (42 bp):
GTTTATAAGTGTTTTTGAAGAATAAAATTATATTTAGGTTTA
Found at i:57703136 original size:13 final size:14
Alignment explanation
Indices: 57703105--57703169 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 14
57703095 TATTCAAATT
57703105 ATTCGAATAATTCAA
1 ATTCGAA-AATTCAA
57703120 ATTCGAAAATT-AA
1 ATTCGAAAATTCAA
*
57703133 ATTCGATTCGAAATTGAA
1 ATTCGA----AAATTCAA
*
57703151 ATTTGAAAATT-AA
1 ATTCGAAAATTCAA
57703164 ATTCGA
1 ATTCGA
57703170 TTCGAACTCG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
13 15 0.35
14 9 0.21
15 7 0.16
17 5 0.12
18 7 0.16
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (14 bp):
ATTCGAAAATTCAA
Found at i:57703141 original size:18 final size:18
Alignment explanation
Indices: 57703120--57703175 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
57703110 AATAATTCAA
57703120 ATTCGAAAATTAAATTCG
1 ATTCGAAAATTAAATTCG
57703138 ATTCG-AAATTGAAA-T--
1 ATTCGAAAATT-AAATTCG
57703153 -TT-GAAAATTAAATTCG
1 ATTCGAAAATTAAATTCG
57703169 ATTCGAA
1 ATTCGAA
57703176 CTCGAAATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
13 4 0.13
14 8 0.26
17 8 0.26
18 11 0.35
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (18 bp):
ATTCGAAAATTAAATTCG
Found at i:57703153 original size:31 final size:31
Alignment explanation
Indices: 57703113--57703190 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
57703103 TTATTCGAAT
*
57703113 AATTCAAATTCGAAAATTAAATTCGATTCGA
1 AATTGAAATTCGAAAATTAAATTCGATTCGA
*
57703144 AATTGAAATTTGAAAATTAAATTCGATTCGA
1 AATTGAAATTCGAAAATTAAATTCGATTCGA
* *
57703175 ACTCGAAATTCGAAAA
1 AATTGAAATTCGAAAA
57703191 AAAAATTAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (31 bp):
AATTGAAATTCGAAAATTAAATTCGATTCGA
Found at i:57705342 original size:39 final size:39
Alignment explanation
Indices: 57705299--57705398 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 39
57705289 TATTACAGAT
*
57705299 TATAACGACATCCAACATTTGTTGCAGATCCC-C-GAGTAA
1 TATAACGAGATCCAACATTTGTTGCAGA-CCCTCGGA-TAA
** *
57705338 TATAACGAGATTTAGCATTTGTTGCAGACCCTCGGATAA
1 TATAACGAGATCCAACATTTGTTGCAGACCCTCGGATAA
*
57705377 TATAAGGAGATCCAACATTTGT
1 TATAACGAGATCCAACATTTGT
57705399 CATGAATTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 3 0.06
39 46 0.90
40 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (39 bp):
TATAACGAGATCCAACATTTGTTGCAGACCCTCGGATAA
Found at i:57705622 original size:20 final size:18
Alignment explanation
Indices: 57705593--57705633 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
57705583 GAATATGGTA
*
57705593 TGAAATGAATTATGTGAAAT
1 TGAAAAGAATT-TGT-AAAT
57705613 TGAAAAGAATTTGTAAAT
1 TGAAAAGAATTTGTAAAT
57705631 TGA
1 TGA
57705634 TAAATGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 3 0.15
20 10 0.50
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (18 bp):
TGAAAAGAATTTGTAAAT
Found at i:57708979 original size:6 final size:6
Alignment explanation
Indices: 57708968--57708995 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
57708958 TTTTCAGTCT
57708968 AACTCC AACTCC AACTCC AACTCC AACT
1 AACTCC AACTCC AACTCC AACTCC AACT
57708996 ACATTTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.46, G:0.00, T:0.18
Consensus pattern (6 bp):
AACTCC
Found at i:57710353 original size:15 final size:14
Alignment explanation
Indices: 57710333--57710375 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
57710323 GAAATGAAAT
57710333 TCGAGTCAAATTGAA
1 TCGAGTCAAATT-AA
* *
57710348 TCGAGTGAAATTAT
1 TCGAGTCAAATTAA
*
57710362 TCGAGTTAAATTAA
1 TCGAGTCAAATTAA
57710376 AAAATTAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.33
Consensus pattern (14 bp):
TCGAGTCAAATTAA
Found at i:57710614 original size:15 final size:16
Alignment explanation
Indices: 57710591--57710624 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
57710581 TTTTTAAATA
57710591 TATTCTTTAGAATTTT
1 TATTCTTTAGAATTTT
*
57710607 TATT-TTTATAATTTT
1 TATTCTTTAGAATTTT
57710622 TAT
1 TAT
57710625 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (16 bp):
TATTCTTTAGAATTTT
Found at i:57710676 original size:19 final size:20
Alignment explanation
Indices: 57710645--57710697 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
57710635 CAAAAGATAA
*
57710645 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AATTTTTAAAAATT
57710665 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
57710684 ATTTTGAACTTTTT
1 ATTTTGAA-TTTTT
57710698 TTTGTACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.28
19 11 0.38
20 6 0.21
21 4 0.14
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:57716904 original size:23 final size:23
Alignment explanation
Indices: 57716878--57717002 Score: 153
Period size: 23 Copynumber: 5.4 Consensus size: 23
57716868 AGTGCTGGGC
*
57716878 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
* *
57716901 AACAGAGAGTACACAAAGTACTA
1 AACAGAGAGCACACAAAGTGCTA
*
57716924 ATCAGAGAGCACACAAAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
* *
57716947 ATCAAAGAGCACACAAAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
* * *
57716970 ATCAGAGAGCACGA-GACGTGCTA
1 AACAGAGAGCAC-ACAAAGTGCTA
57716993 AACAGAGAGC
1 AACAGAGAGC
57717003 GCGCTAGTGT
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 89 0.99
24 1 0.01
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.11
Consensus pattern (23 bp):
AACAGAGAGCACACAAAGTGCTA
Found at i:57716930 original size:46 final size:46
Alignment explanation
Indices: 57716880--57717002 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
57716870 TGCTGGGCAA
*
57716880 CAGAGAGCACACACAGTGCTAAACAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
* * * *
57716926 CAGAGAGCACACAAAGTGCTAATCAAAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
*
57716972 CAGAGAGCACGAGAC-GTGCTAAACAGAGAGC
1 CAGAGAGCAC-ACACAGTGCTAAACAGAGAGC
57717003 GCGCTAGTGT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 65 0.97
47 2 0.03
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.11
Consensus pattern (46 bp):
CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
Found at i:57716956 original size:69 final size:66
Alignment explanation
Indices: 57716834--57716978 Score: 175
Period size: 69 Copynumber: 2.1 Consensus size: 66
57716824 ACGGAACAAG
** * *
57716834 CAGAGAGTACCAAAGTACTAACAGAGAGCACATGAGTGCTGGGCAACAGAGAGCACACACAGTGC
1 CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAAAGAGCACACAAAGTGC
57716899 TAAA
63 TAAA
57716903 CAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAAAGAGCACACAAAGTG
1 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAAAGAGCACACAAAGTG
*
57716967 CTAAT
62 CTAAA
57716972 CAGAGAG
1 CAGAGAG
57716979 CACGAGACGT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
68 2 0.03
69 37 0.55
70 11 0.16
71 11 0.16
72 6 0.09
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (66 bp):
CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAAAGAGCACACAAAGTGCTAA
A
Found at i:57724326 original size:37 final size:37
Alignment explanation
Indices: 57724256--57724439 Score: 215
Period size: 37 Copynumber: 5.0 Consensus size: 37
57724246 GTTCTTGGAT
* * * *
57724256 CACCAGCACAAAGCCTGCTAGGGACACAGCCTGATTA
1 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAATA
* * **
57724293 CACTGGCACGAAGCCTGCTAGGCTTACAACCTGAATA
1 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAATA
** * *
57724330 CACCGGCATTAAGCCTGCTAGGCACATAGCCTGAATA
1 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAATA
* * * * *
57724367 CACTGGCACGAAGCCTGCTAGGCTCACAGCCTAAATA
1 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAATA
57724404 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAAT
1 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAAT
57724440 TTGTAGATGC
Statistics
Matches: 121, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 121 1.00
ACGTcount: A:0.31, C:0.32, G:0.21, T:0.16
Consensus pattern (37 bp):
CACCGGCACAAAGCCTGCTAGGCACACAACCTGAATA
Found at i:57724387 original size:74 final size:74
Alignment explanation
Indices: 57724256--57724439 Score: 278
Period size: 74 Copynumber: 2.5 Consensus size: 74
57724246 GTTCTTGGAT
* * * *
57724256 CACCAGCACAAAGCCTGCTAGGGACACAGCCTGATTACACTGGCACGAAGCCTGCTAGGCTTACA
1 CACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACACTGGCACGAAGCCTGCTAGGCTCACA
*
57724321 ACCTGAATA
66 ACCTAAATA
** *
57724330 CACCGGCATTAAGCCTGCTAGGCACATAGCCTGAATACACTGGCACGAAGCCTGCTAGGCTCACA
1 CACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACACTGGCACGAAGCCTGCTAGGCTCACA
*
57724395 GCCTAAATA
66 ACCTAAATA
*
57724404 CACCGGCACAAAGCCTGCTAGGCACACAACCTGAAT
1 CACCGGCACAAAGCCTGCTAGGCACACAGCCTGAAT
57724440 TTGTAGATGC
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
74 97 1.00
ACGTcount: A:0.31, C:0.32, G:0.21, T:0.16
Consensus pattern (74 bp):
CACCGGCACAAAGCCTGCTAGGCACACAGCCTGAATACACTGGCACGAAGCCTGCTAGGCTCACA
ACCTAAATA
Found at i:57726912 original size:41 final size:40
Alignment explanation
Indices: 57726864--57726964 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 40
57726854 TCGACCTTGA
** *
57726864 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
57726904 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
57726942 GCCGATGAGACACTGGGTGTCAC
1 GTCGATGAGACACTGGGTGTCAC
57726965 TTTATTGCTT
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
37 10 0.22
38 17 0.37
39 4 0.09
40 4 0.09
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:57735823 original size:1 final size:1
Alignment explanation
Indices: 57735817--57735850 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
57735807 GTGTGTGTGT
57735817 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
57735851 TTGATTTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:57743029 original size:41 final size:39
Alignment explanation
Indices: 57742934--57743032 Score: 94
Period size: 41 Copynumber: 2.5 Consensus size: 39
57742924 AGCAATAAAG
* *
57742934 TGACACCCAGTGTCTCATCG-GCCTAGCCGAAGTAAAGA
1 TGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAAA
** ** * *
57742972 -GGTACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAA
1 TGACACCCAGTGTCTCATCGAACCTAGCCGAAGT-AAA-AA
57743012 TGACACCCAGTGTCTCATCGA
1 TGACACCCAGTGTCTCATCGA
57743033 CTTAAGGTCG
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
37 15 0.33
38 10 0.22
39 3 0.07
40 1 0.02
41 16 0.36
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (39 bp):
TGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAAA
Found at i:57757082 original size:24 final size:22
Alignment explanation
Indices: 57757048--57757112 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
57757038 CTTATTACTT
57757048 TTTATATATATATATTTATTTA
1 TTTATATATATATATTTATTTA
*
57757070 TTTATAGTAATATATTTTTATTTA
1 TTTATA-T-ATATATATTTATTTA
* *
57757094 TGTT-TGTATATATAGTTAT
1 T-TTATATATATATATTTAT
57757113 ATATAATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
22 16 0.44
23 2 0.06
24 16 0.44
25 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTATATATATATATTTATTTA
Found at i:57765908 original size:26 final size:27
Alignment explanation
Indices: 57765860--57765927 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
57765850 AAATGTGAAG
* ** *
57765860 TTTAAATACAAAATTGGATAAAA-AAA
1 TTTAAATACCAAATTAAAAAAAACAAA
57765886 TTTAAATACCAAATTAAAAAAAATCAAA
1 TTTAAATACCAAATTAAAAAAAA-CAAA
* *
57765914 TTCAAATATCAAAT
1 TTTAAATACCAAAT
57765928 ATTATATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 19 0.56
28 15 0.44
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.28
Consensus pattern (27 bp):
TTTAAATACCAAATTAAAAAAAACAAA
Found at i:57778661 original size:30 final size:31
Alignment explanation
Indices: 57778626--57778685 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
57778616 TAAAATTTTA
* *
57778626 AATTTTT-TTAAAAGATTGATGGTTAAATTT
1 AATTTTTATTAAAAGATTAATGGATAAATTT
*
57778656 AATTTTTATTAAAAGGTTAATGGATAAATT
1 AATTTTTATTAAAAGATTAATGGATAAATT
57778686 AAGTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (31 bp):
AATTTTTATTAAAAGATTAATGGATAAATTT
Found at i:57779090 original size:24 final size:25
Alignment explanation
Indices: 57779063--57779110 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
57779053 GTTCTATAAT
*
57779063 TTTTAT-AACTTGTAATAATTTTTG
1 TTTTATAAACTTCTAATAATTTTTG
*
57779087 TTTTATAAACTTCTATTAATTTTT
1 TTTTATAAACTTCTAATAATTTTT
57779111 AATAATTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTTATAAACTTCTAATAATTTTTG
Found at i:57785212 original size:46 final size:46
Alignment explanation
Indices: 57785149--57785239 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
57785139 AGATCTTTTG
* *
57785149 ATACGTCCACCAGAATAATGAGTCAATAGGGACTACTTATTTTTCA
1 ATACGTCCACCAAAATAATGAGTCAATAGGGACTACTTATCTTTCA
*
57785195 ATACGTCTACCAAAATAATGAGTCAATAGGGACTACTTATCTTTC
1 ATACGTCCACCAAAATAATGAGTCAATAGGGACTACTTATCTTTC
57785240 GACCTCACAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (46 bp):
ATACGTCCACCAAAATAATGAGTCAATAGGGACTACTTATCTTTCA
Found at i:57786713 original size:18 final size:18
Alignment explanation
Indices: 57786690--57786724 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
57786680 CTCACGGTCG
57786690 AACTCTCTTATCTCTCTC
1 AACTCTCTTATCTCTCTC
57786708 AACTCTCTTATCTCTCT
1 AACTCTCTTATCTCTCT
57786725 AGTTTCTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (18 bp):
AACTCTCTTATCTCTCTC
Found at i:57787010 original size:15 final size:16
Alignment explanation
Indices: 57786986--57787025 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
57786976 CCAATGCCAA
57786986 ACCC-AAACCTTT-TG
1 ACCCAAAACCTTTATG
*
57787000 ACCCAAAACCTTTATT
1 ACCCAAAACCTTTATG
57787016 ACCCAAAACC
1 ACCCAAAACC
57787026 AACCCAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.17
15 8 0.35
16 11 0.48
ACGTcount: A:0.38, C:0.38, G:0.03, T:0.23
Consensus pattern (16 bp):
ACCCAAAACCTTTATG
Found at i:57787128 original size:24 final size:24
Alignment explanation
Indices: 57787096--57787149 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
57787086 CTGATGAGAT
*
57787096 CGAACTTGACTCGAACCCATTGAC
1 CGAACTTGACTCGAACACATTGAC
* *
57787120 CGAATTTGACTCGAACACGTTGAC
1 CGAACTTGACTCGAACACATTGAC
57787144 CGAACT
1 CGAACT
57787150 CGACCAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (24 bp):
CGAACTTGACTCGAACACATTGAC
Found at i:57787181 original size:7 final size:7
Alignment explanation
Indices: 57787171--57787238 Score: 55
Period size: 7 Copynumber: 9.7 Consensus size: 7
57787161 TCGTTGATAG
57787171 TTGACCA
1 TTGACCA
*
57787178 TTGACCG
1 TTGACCA
*
57787185 TTGACTA
1 TTGACCA
*
57787192 TTGATCA
1 TTGACCA
*
57787199 TTGACCG
1 TTGACCA
**
57787206 TTGATTA
1 TTGACCA
*
57787213 TTGACCG
1 TTGACCA
*
57787220 TTGACTA
1 TTGACCA
*
57787227 TTGACCG
1 TTGACCA
57787234 TTGAC
1 TTGAC
57787239 TTAGAGTGTT
Statistics
Matches: 44, Mismatches: 17, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (7 bp):
TTGACCA
Found at i:57787181 original size:21 final size:21
Alignment explanation
Indices: 57787151--57787224 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
57787141 GACCGAACTC
*
57787151 GACCAATTGATCGTTGA-TAGTT
1 GACC-ATTGACCGTTGACTA-TT
57787173 GACCATTGACCGTTGACTATT
1 GACCATTGACCGTTGACTATT
* *
57787194 GATCATTGACCGTTGATTATT
1 GACCATTGACCGTTGACTATT
*
57787215 GACCGTTGAC
1 GACCATTGAC
57787225 TATTGACCGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 40 0.87
22 6 0.13
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (21 bp):
GACCATTGACCGTTGACTATT
Found at i:57787238 original size:14 final size:14
Alignment explanation
Indices: 57787198--57787239 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
57787188 ACTATTGATC
*
57787198 ATTGACCGTTGATT
1 ATTGACCGTTGACT
57787212 ATTGACCGTTGACT
1 ATTGACCGTTGACT
57787226 ATTGACCGTTGACT
1 ATTGACCGTTGACT
57787240 TAGAGTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (14 bp):
ATTGACCGTTGACT
Found at i:57790369 original size:3 final size:3
Alignment explanation
Indices: 57790361--57790431 Score: 79
Period size: 3 Copynumber: 23.3 Consensus size: 3
57790351 AAATTCAATA
* *
57790361 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAC AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * *
57790407 AAG AAT AAC AAT AAC AAT AAC AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
57790432 GCATTGACAT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
3 53 0.96
4 2 0.04
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:57790537 original size:19 final size:17
Alignment explanation
Indices: 57790507--57790548 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
57790497 TTATGAATTT
57790507 TTTTTAAATTTTGA-TAA
1 TTTTTAAATTTT-ATTAA
57790524 TTTTTAAATTTTTTATTAA
1 TTTTTAAA--TTTTATTAA
57790543 TTTTTA
1 TTTTTA
57790549 TTAATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.36
18 1 0.05
19 13 0.59
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTTAAATTTTATTAA
Found at i:57790537 original size:28 final size:29
Alignment explanation
Indices: 57790502--57790558 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
57790492 AGTTTTTATG
57790502 AATTTTTT-TTAAATTTTGA-TAATTTTTA
1 AATTTTTTATT-AATTTTGATTAATTTTTA
*
57790530 AATTTTTTATTAATTTTTATTAATTTTTA
1 AATTTTTTATTAATTTTGATTAATTTTTA
57790559 TGAATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
AATTTTTTATTAATTTTGATTAATTTTTA
Found at i:57790558 original size:10 final size:10
Alignment explanation
Indices: 57790494--57790564 Score: 67
Period size: 10 Copynumber: 7.2 Consensus size: 10
57790484 TTTCTAAAAG
*
57790494 TTTTTATGAA
1 TTTTTATTAA
*
57790504 TTTTTTTTAAA
1 TTTTTATT-AA
*
57790515 TTTTGA-TAA
1 TTTTTATTAA
57790524 TTTTTA--AA
1 TTTTTATTAA
57790532 TTTTTTATTAA
1 -TTTTTATTAA
57790543 TTTTTATTAA
1 TTTTTATTAA
*
57790553 TTTTTATGAA
1 TTTTTATTAA
57790563 TT
1 TT
57790565 ATATATGGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 2 0.04
9 13 0.25
10 28 0.55
11 8 0.16
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (10 bp):
TTTTTATTAA
Found at i:57799264 original size:31 final size:31
Alignment explanation
Indices: 57799187--57799266 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
57799177 TTTTAGGGTC
*
57799187 TAACTAAAATTTTCAAAAACTTTAGAAGATT
1 TAACTAAAATTTTTAAAAACTTTAGAAGATT
* * * * * *
57799218 TAACGAGAATGTTTAAAAACTTTGGTAGGTT
1 TAACTAAAATTTTTAAAAACTTTAGAAGATT
*
57799249 TAATTAAAATTTTTAAAA
1 TAACTAAAATTTTTAAAA
57799267 GTTTTAAAGG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (31 bp):
TAACTAAAATTTTTAAAAACTTTAGAAGATT
Found at i:57799336 original size:22 final size:22
Alignment explanation
Indices: 57799311--57799355 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
57799301 TTAAGGGATC
*
57799311 TAATTAAAAGTTTT-AAAAATTT
1 TAATGAAAA-TTTTCAAAAATTT
*
57799333 TAATGAAAATTTTCAAATATTT
1 TAATGAAAATTTTCAAAAATTT
57799355 T
1 T
57799356 GAAGAGCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (22 bp):
TAATGAAAATTTTCAAAAATTT
Found at i:57808006 original size:15 final size:15
Alignment explanation
Indices: 57807988--57808016 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
57807978 AAATTTTAAA
57807988 ATTTAAAAAAAATAC
1 ATTTAAAAAAAATAC
57808003 ATTTAAAAAAAATA
1 ATTTAAAAAAAATA
57808017 AAGCTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTTAAAAAAAATAC
Found at i:57822384 original size:61 final size:61
Alignment explanation
Indices: 57822286--57822411 Score: 144
Period size: 61 Copynumber: 2.1 Consensus size: 61
57822276 TTTTAGATAT
* ** * ** * * *
57822286 AAAAAATAAATAAATTTAGCCCTCAATGTTTACAAAATTTGTCATTTTAATTCTAATTCTA
1 AAAAAATAAATAAATTTAGCCATCAACATTTACAAAATCTACCAATTTAATCCTAACTCTA
* * *
57822347 AAAAAATTAATAAATTTATCCATCAACATTTATAAAATCTACCAATTTAATCCTAACTCTA
1 AAAAAATAAATAAATTTAGCCATCAACATTTACAAAATCTACCAATTTAATCCTAACTCTA
57822408 AAAA
1 AAAA
57822412 TTAAAAAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (61 bp):
AAAAAATAAATAAATTTAGCCATCAACATTTACAAAATCTACCAATTTAATCCTAACTCTA
Found at i:57825081 original size:21 final size:21
Alignment explanation
Indices: 57825055--57825095 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57825045 CAATGCTACA
* *
57825055 CCTCCACCCTCACCTTTTAGC
1 CCTCCACCCCCACCTGTTAGC
57825076 CCTCCACCCCCACCTGTTAG
1 CCTCCACCCCCACCTGTTAG
57825096 TCTTCCCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.54, G:0.07, T:0.24
Consensus pattern (21 bp):
CCTCCACCCCCACCTGTTAGC
Found at i:57828578 original size:21 final size:21
Alignment explanation
Indices: 57828529--57828611 Score: 85
Period size: 21 Copynumber: 3.9 Consensus size: 21
57828519 ATTATATTGT
*
57828529 TATTTTGATGCTGTTTTTTTAC
1 TATTTTGATGCT-ATTTTTTAC
* *
57828551 TATTTTTGTTGCTATTTTTTGC
1 TA-TTTTGATGCTATTTTTTAC
*
57828573 TATTTTGATGTTATTTTTTAC
1 TATTTTGATGCTATTTTTTAC
* * *
57828594 TGTTTTGGTGCTGTTTTT
1 TATTTTGATGCTATTTTT
57828612 GCTATTATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 30 0.60
22 11 0.22
23 9 0.18
ACGTcount: A:0.11, C:0.07, G:0.16, T:0.66
Consensus pattern (21 bp):
TATTTTGATGCTATTTTTTAC
Found at i:57828622 original size:12 final size:12
Alignment explanation
Indices: 57828607--57828647 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
57828597 TTTGGTGCTG
*
57828607 TTTTTGCTATTA
1 TTTTTGCTGTTA
*
57828619 TTTTTGTTGTTA
1 TTTTTGCTGTTA
57828631 TTTTTGCTGTTA
1 TTTTTGCTGTTA
57828643 TTTTT
1 TTTTT
57828648 ATTTTTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.10, C:0.05, G:0.12, T:0.73
Consensus pattern (12 bp):
TTTTTGCTGTTA
Found at i:57828623 original size:24 final size:24
Alignment explanation
Indices: 57828596--57828647 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
57828586 TTTTTTACTG
*
57828596 TTTTGGTGCTGTTTTTGCTATTAT
1 TTTTGGTGCTATTTTTGCTATTAT
* * *
57828620 TTTTGTTGTTATTTTTGCTGTTAT
1 TTTTGGTGCTATTTTTGCTATTAT
57828644 TTTT
1 TTTT
57828648 ATTTTTGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.06, G:0.17, T:0.69
Consensus pattern (24 bp):
TTTTGGTGCTATTTTTGCTATTAT
Found at i:57828658 original size:12 final size:12
Alignment explanation
Indices: 57828616--57828733 Score: 91
Period size: 12 Copynumber: 10.2 Consensus size: 12
57828606 GTTTTTGCTA
57828616 TTATTTTTGTTG
1 TTATTTTTGTTG
*
57828628 TTATTTTTGCTG
1 TTATTTTTGTTG
* *
57828640 TTATTTTTATTT
1 TTATTTTTGTTG
*
57828652 TTGTTTTTGTTG
1 TTATTTTTGTTG
* *
57828664 CTATTTTTATTG
1 TTATTTTTGTTG
* *
57828676 TTGTTATTGTTG
1 TTATTTTTGTTG
57828688 ----TTTTGTTG
1 TTATTTTTGTTG
**
57828696 TTATTTTTACTG
1 TTATTTTTGTTG
* * *
57828708 CTGTTTTGGTTG
1 TTATTTTTGTTG
57828720 TTATTTTTGTTG
1 TTATTTTTGTTG
57828732 TT
1 TT
57828734 TGGATGTTAT
Statistics
Matches: 77, Mismatches: 25, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
8 7 0.09
12 70 0.91
ACGTcount: A:0.08, C:0.03, G:0.17, T:0.71
Consensus pattern (12 bp):
TTATTTTTGTTG
Found at i:57828658 original size:24 final size:24
Alignment explanation
Indices: 57828605--57828689 Score: 98
Period size: 24 Copynumber: 3.5 Consensus size: 24
57828595 GTTTTGGTGC
* *
57828605 TGTTTTTGCTATTATTTTTGTTGT
1 TGTTTTTGCTGTTATTTTTATTGT
* *
57828629 TATTTTTGCTGTTATTTTTATTTT
1 TGTTTTTGCTGTTATTTTTATTGT
* *
57828653 TGTTTTTGTTGCTATTTTTATTGT
1 TGTTTTTGCTGTTATTTTTATTGT
* *
57828677 TGTTATTGTTGTT
1 TGTTTTTGCTGTT
57828690 TTGTTGTTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.09, C:0.04, G:0.15, T:0.72
Consensus pattern (24 bp):
TGTTTTTGCTGTTATTTTTATTGT
Found at i:57828701 original size:32 final size:32
Alignment explanation
Indices: 57828646--57828730 Score: 91
Period size: 32 Copynumber: 2.6 Consensus size: 32
57828636 GCTGTTATTT
* * * *
57828646 TTATTTTTGTTTTTGTTGCTATTTTTATTGTTG
1 TTATTGTTG-TTTTGTTGTTATTTTTACTGCTG
57828679 TTATTGTTGTTTTGTTGTTATTTTTACTGCTG
1 TTATTGTTGTTTTGTTGTTATTTTTACTGCTG
*
57828711 TT-TTGGTTGTTATTTTTGTT
1 TTATT-GTTGTT-TTGTTGTT
57828731 GTTTGGATGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
31 2 0.04
32 28 0.62
33 15 0.33
ACGTcount: A:0.08, C:0.04, G:0.18, T:0.71
Consensus pattern (32 bp):
TTATTGTTGTTTTGTTGTTATTTTTACTGCTG
Found at i:57828730 original size:44 final size:42
Alignment explanation
Indices: 57828673--57828756 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 42
57828663 GCTATTTTTA
* * *
57828673 TTGTTGTTATTGTTGTTTTGTTGTTATTTTTACTGCTGTTTTGG
1 TTGTTATTATTGTTGTTTGGATGTTATTTTTA-TGC-GTTTTGG
*
57828717 TTGTTATTTTTGTTGTTTGGATGTTATTTTTATGCGTTTT
1 TTGTTATTATTGTTGTTTGGATGTTATTTTTATGCGTTTT
57828757 TACTATTGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 5 0.14
43 3 0.08
44 28 0.78
ACGTcount: A:0.08, C:0.04, G:0.21, T:0.67
Consensus pattern (42 bp):
TTGTTATTATTGTTGTTTGGATGTTATTTTTATGCGTTTTGG
Found at i:57828755 original size:21 final size:21
Alignment explanation
Indices: 57828694--57828755 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
57828684 GTTGTTTTGT
*
57828694 TGTTATTTTTACTGCTGTTTTGGT
1 TGTTATTTTTA-TGC-G-TTTGGA
* *
57828718 TGTTATTTTTGT-TGTTTGGA
1 TGTTATTTTTATGCGTTTGGA
57828738 TGTTATTTTTATGCGTTT
1 TGTTATTTTTATGCGTTT
57828756 TTACTATTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.50
21 5 0.16
23 1 0.03
24 10 0.31
ACGTcount: A:0.10, C:0.05, G:0.21, T:0.65
Consensus pattern (21 bp):
TGTTATTTTTATGCGTTTGGA
Found at i:57831492 original size:96 final size:96
Alignment explanation
Indices: 57831323--57831515 Score: 314
Period size: 96 Copynumber: 2.0 Consensus size: 96
57831313 AAACAACAAG
* * *
57831323 GAACCGACTTCCCTGGTCCTTGCGAGGTTATCGAATTGAAAGATGGGATAAGAAGGGAAACCGCA
1 GAACCGACTTCCCTGATCCTTGCGAGGTTATCGAATTGAAAGAAGAGATAAGAAGGGAAACCGCA
57831388 ATCATAACATGTAACAGTGAGCGTAATCGGA
66 ATCATAACATGTAACAGTGAGCGTAATCGGA
* * *
57831419 GAACTGACTTCCCTGATCCTTGCGAGGTTATCGAATTGAAAGAAGAGATAAGAAGGGAAAGCGCG
1 GAACCGACTTCCCTGATCCTTGCGAGGTTATCGAATTGAAAGAAGAGATAAGAAGGGAAACCGCA
* *
57831484 ATCATAACATGTAAGAGTGAGCGTAGTCGGA
66 ATCATAACATGTAACAGTGAGCGTAATCGGA
57831515 G
1 G
57831516 TGCAAGATTC
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (96 bp):
GAACCGACTTCCCTGATCCTTGCGAGGTTATCGAATTGAAAGAAGAGATAAGAAGGGAAACCGCA
ATCATAACATGTAACAGTGAGCGTAATCGGA
Found at i:57834974 original size:28 final size:29
Alignment explanation
Indices: 57834915--57834975 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
57834905 AAAATGAGAT
*
57834915 TTTTGGATACTCGAGGGGTAAAACGGTAA
1 TTTTGGATACTCGAGGGGAAAAACGGTAA
*
57834944 TTTTGGAT-CTTCGA-GGGAAAAATGGTAA
1 TTTTGGATAC-TCGAGGGGAAAAACGGTAA
57834972 TTTT
1 TTTT
57834976 TGGAAGGTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (29 bp):
TTTTGGATACTCGAGGGGAAAAACGGTAA
Found at i:57834976 original size:29 final size:30
Alignment explanation
Indices: 57834913--57835039 Score: 95
Period size: 29 Copynumber: 4.3 Consensus size: 30
57834903 TAAAAATGAG
* *
57834913 ATTTTTGGATAC-TCGAGGGGTAAAACGGTA
1 ATTTTTGGAT-CTTCGAGGGGAAAAATGGTA
57834943 A-TTTTGGATCTTCGA-GGGAAAAATGGTA
1 ATTTTTGGATCTTCGAGGGGAAAAATGGTA
** **
57834971 ATTTTTGGAAGGTTCGAGGTAAAAAAATGG-A
1 ATTTTTGG-ATCTTCGAGG-GGAAAAATGGTA
* * *
57835002 TTTTTTAGA-CATTC-AGGGGTAAAATGGTA
1 ATTTTTGGATC-TTCGAGGGGAAAAATGGTA
57835031 ATTTTTGGA
1 ATTTTTGGA
57835040 AGTTTAGGAT
Statistics
Matches: 76, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
28 20 0.26
29 29 0.38
30 11 0.14
31 8 0.11
32 8 0.11
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (30 bp):
ATTTTTGGATCTTCGAGGGGAAAAATGGTA
Found at i:57834989 original size:30 final size:29
Alignment explanation
Indices: 57834925--57835098 Score: 92
Period size: 29 Copynumber: 5.9 Consensus size: 29
57834915 TTTTGGATAC
* * **
57834925 TCGAGGGGTAAAACGGTAA-TTTTGGATCT
1 TCGA-GGGAAAAATGGTAATTTTTGGAAGT
57834954 TCGAGGGAAAAATGGTAATTTTTGGAAGGT
1 TCGAGGGAAAAATGGTAATTTTTGGAA-GT
* * *
57834984 TCGAGGTAAAAAAATGG-ATTTTTTAGACA-T
1 TCGAGG--GAAAAATGGTAATTTTTGGA-AGT
*
57835014 TC-AGGGGTAAAATGGTAATTTTTGGAAGT
1 TCGA-GGGAAAAATGGTAATTTTTGGAAGT
* * *
57835043 T-TAGGATCAAAAATGG-AATTTTTGGACATT
1 TCGAGG--GAAAAATGGTAATTTTTGGA-AGT
* * *
57835073 TAG-GGGTAAAATAGTAATTTTTGGAA
1 TCGAGGGAAAAATGGTAATTTTTGGAA
57835099 AAATCAAGGT
Statistics
Matches: 113, Mismatches: 18, Indels: 29
0.71 0.11 0.18
Matches are distributed among these distances:
28 29 0.26
29 43 0.38
30 24 0.21
31 8 0.07
32 9 0.08
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.33
Consensus pattern (29 bp):
TCGAGGGAAAAATGGTAATTTTTGGAAGT
Found at i:57835054 original size:29 final size:29
Alignment explanation
Indices: 57834961--57835098 Score: 97
Period size: 29 Copynumber: 4.7 Consensus size: 29
57834951 TCTTCGAGGG
* * *
57834961 AAAAATGGTAATTTTTGGAAGGTTCGAGGTAA
1 AAAAATGGTAATTTTTGGAA--TT-TAGGGAT
* * * *
57834993 AAAAATGG-ATTTTTTAGACATTCAGGGGT
1 AAAAATGGTAATTTTTGGA-ATTTAGGGAT
57835022 -AAAATGGTAATTTTTGGAAGTTTA-GGAT
1 AAAAATGGTAATTTTTGGAA-TTTAGGGAT
*
57835050 CAAAAATGG-AATTTTTGGACATTTAGGGGT
1 -AAAAATGGTAATTTTTGGA-ATTTAGGGAT
*
57835080 -AAAATAGTAATTTTTGGAA
1 AAAAATGGTAATTTTTGGAA
57835099 AAATCAAGGT
Statistics
Matches: 86, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
28 18 0.21
29 38 0.44
30 13 0.15
31 8 0.09
32 9 0.10
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (29 bp):
AAAAATGGTAATTTTTGGAATTTAGGGAT
Found at i:57835078 original size:58 final size:57
Alignment explanation
Indices: 57834962--57835240 Score: 213
Period size: 58 Copynumber: 4.7 Consensus size: 57
57834952 CTTCGAGGGA
* * * * *
57834962 AAAATGGTAATTTTTGGAAGGTTCGAGGTAAAAAAATGGATTTTTTAGACATTCAGGGGT
1 AAAATGGTAATTTTTGGAA-GTT-TAGGT-CAAAAATGGAATTTTTGGACATTTAGGGGT
57835022 AAAATGGTAATTTTTGGAAGTTTAGGATCAAAAATGGAATTTTTGGACATTTAGGGGT
1 AAAATGGTAATTTTTGGAAGTTTAGG-TCAAAAATGGAATTTTTGGACATTTAGGGGT
* * ** * * *
57835080 AAAATAGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAA-TTTTGGAAAGTTCGGAGGT
1 AAAATGGTAATTTTTGG--AAGTTTAGGTCAAAAATGGAATTTTTGGACATTTAGG-GGT
* *** * * **
57835139 -AAATGATAATTTTCAAAAGTTTTGGGGTTAAAAATTAAATTTTTGGACATTT-GAGGGT
1 AAAATGGTAATTTTTGGAAG-TTT-AGGTCAAAAATGGAATTTTTGGACATTTAG-GGGT
* ** *
57835197 AAAATAGTAATTTTTGGAAAAATTAGGGTTAAAAATGGAATTTT
1 AAAATGGTAATTTTTGG-AAGTTTA-GGTCAAAAATGGAATTTT
57835241 GAAAAGTTTG
Statistics
Matches: 172, Mismatches: 36, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
56 2 0.01
57 1 0.01
58 83 0.48
59 59 0.34
60 27 0.16
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.35
Consensus pattern (57 bp):
AAAATGGTAATTTTTGGAAGTTTAGGTCAAAAATGGAATTTTTGGACATTTAGGGGT
Found at i:57835191 original size:29 final size:29
Alignment explanation
Indices: 57835159--57835348 Score: 83
Period size: 29 Copynumber: 6.4 Consensus size: 29
57835149 TTTCAAAAGT
*
57835159 TTTGGGGTTAAAAATTAAATTTTTGG-ACA
1 TTTGGGGTTAAAAATT-AATTTTTGGAAAA
*
57835188 TTTGAGGG-TAAAATAGTAATTTTTGGAAAA
1 TTTG-GGGTTAAAA-ATTAATTTTTGGAAAA
* * *
57835218 ATTAGGGTTAAAAATGGAA-TTTT-GAAAA
1 TTTGGGGTTAAAAAT-TAATTTTTGGAAAA
* ** *
57835246 GTTTGAGGTT-AAAATGTAATTTTAAG-AAG
1 -TTTGGGGTTAAAAAT-TAATTTTTGGAAAA
* * * *
57835275 TTCGAGGG-TCAAAATGTAATTTTAGGAAAG
1 TTTG-GGGTTAAAAAT-TAATTTTTGGAAAA
57835305 TTTGGGGGGTT-AAAATGTAATTTTT-GAAAA
1 TTT--GGGGTTAAAAAT-TAATTTTTGGAAAA
*
57835335 GTTTAGGGTTAAAA
1 -TTTGGGGTTAAAA
57835349 CATGATTTTT
Statistics
Matches: 126, Mismatches: 19, Indels: 31
0.72 0.11 0.18
Matches are distributed among these distances:
28 17 0.13
29 59 0.47
30 29 0.23
31 19 0.15
32 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (29 bp):
TTTGGGGTTAAAAATTAATTTTTGGAAAA
Found at i:57835266 original size:117 final size:116
Alignment explanation
Indices: 57835051--57835348 Score: 333
Period size: 117 Copynumber: 2.5 Consensus size: 116
57835041 GTTTAGGATC
* * * *
57835051 AAAAATGGAATTTTTGGACATTT-AGGGGTAAAATAGTAATTTTTGGAAAAATCAAGGTCAAAAA
1 AAAAATGTAATTTTTGGACATTTGA-GGGTAAAATAGTAATTTTTGGAAAAATTAGGGTTAAAAA
* *
57835115 TGGAATTTTGGAAAGTTCGGAGGTAAATGATAATTTTCAA-AAGTTTTG-GGGTT
65 TGGAATTTTGAAAAGTTCGGAGGTAAATGATAATTTT-AAGAAG-TTCGAGGG-T
57835168 AAAAAT-TAAATTTTTGGACATTTGAGGGTAAAATAGTAATTTTTGGAAAAATTAGGGTTAAAAA
1 AAAAATGT-AATTTTTGGACATTTGAGGGTAAAATAGTAATTTTTGGAAAAATTAGGGTTAAAAA
*
57835232 TGGAATTTTGAAAAGTT-TGAGGTTAAAATG-TAATTTTAAGAAGTTCGAGGGT
65 TGGAATTTTGAAAAGTTCGGAGG-T-AAATGATAATTTTAAGAAGTTCGAGGGT
* * * * *
57835284 CAAAATGTAATTTTAGGAAAGTTTGGGGGGTTAAAAT-GTAATTTTT-GAAAAGTTTAGGGTTAA
1 AAAAATGTAATTTTTGGACA-TTT-GAGGG-TAAAATAGTAATTTTTGGAAAA-ATTAGGGTTAA
57835347 AA
62 AA
57835349 CATGATTTTT
Statistics
Matches: 158, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
116 25 0.16
117 96 0.61
118 31 0.20
119 6 0.04
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (116 bp):
AAAAATGTAATTTTTGGACATTTGAGGGTAAAATAGTAATTTTTGGAAAAATTAGGGTTAAAAAT
GGAATTTTGAAAAGTTCGGAGGTAAATGATAATTTTAAGAAGTTCGAGGGT
Found at i:57835283 original size:58 final size:57
Alignment explanation
Indices: 57835110--57835348 Score: 195
Period size: 59 Copynumber: 4.1 Consensus size: 57
57835100 AATCAAGGTC
* *
57835110 AAAAATGGAATTTTGGAAAGTTCGGAGG-T-AAATGATAATTTTCAAAAGTTTTG-GGGTT
1 AAAAATGGAATTTTGGAAAGTT-TGAGGTTAAAATG-TAATTTTGAAAAG--TTGAGGGTT
** * * *
57835168 AAAAATTAAATTTTTGGACA-TTTGAGGGTAAAATAGTAATTTTTGGAAAAATT-AGGGTT
1 AAAAATGGAA-TTTTGGAAAGTTTGAGGTTAAAAT-GTAA-TTTT-GAAAAGTTGAGGGTT
*
57835227 AAAAATGGAATTTTGAAAAGTTTGAGGTTAAAATGTAATTTT-AAGAAGTTCGAGGG-T
1 AAAAATGGAATTTTGGAAAGTTTGAGGTTAAAATGTAATTTTGAA-AAGTT-GAGGGTT
* * * *
57835284 CAAAATGTAATTTTAGGAAAGTTTGGGGGGTTAAAATGTAATTTTTGAAAAGTTTAGGGTT
1 AAAAATGGAATTTT-GGAAAGTTT--GAGGTTAAAATGTAA-TTTTGAAAAGTTGAGGGTT
57835345 AAAA
1 AAAA
57835349 CATGATTTTT
Statistics
Matches: 146, Mismatches: 18, Indels: 31
0.75 0.09 0.16
Matches are distributed among these distances:
55 2 0.01
56 4 0.03
57 21 0.14
58 34 0.23
59 43 0.29
60 23 0.16
61 17 0.12
62 2 0.01
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (57 bp):
AAAAATGGAATTTTGGAAAGTTTGAGGTTAAAATGTAATTTTGAAAAGTTGAGGGTT
Found at i:57837172 original size:17 final size:17
Alignment explanation
Indices: 57837150--57837220 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 17
57837140 TTTTAATATT
* *
57837150 AATAATTTTTAATTCAA
1 AATAATTTTAAATTTAA
57837167 AATAATTTTAAATTTAA
1 AATAATTTTAAATTTAA
* **
57837184 AATAAATTCGAATTTAA
1 AATAATTTTAAATTTAA
* *
57837201 AATAATTTAAAATTTTA
1 AATAATTTTAAATTTAA
57837218 AAT
1 AAT
57837221 TAAAAGTTGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 45 1.00
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (17 bp):
AATAATTTTAAATTTAA
Found at i:57837864 original size:17 final size:17
Alignment explanation
Indices: 57837821--57837855 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
57837811 CTGTAAAAAG
57837821 TAAATTAATTTAAAATAA
1 TAAATTAA-TTAAAATAA
57837839 TAAATTAATTAAAATAA
1 TAAATTAATTAAAATAA
57837856 AATTTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAATTAATTAAAATAA
Found at i:57838192 original size:22 final size:22
Alignment explanation
Indices: 57838150--57838190 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
57838140 AATTTTCAAT
* *
57838150 ATTTTAAATAGAACTTCAAATA
1 ATTTTAAATAAAACTCCAAATA
57838172 ATTTTAAATAAAAC-CCAAA
1 ATTTTAAATAAAACTCCAAA
57838191 ATTTTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (22 bp):
ATTTTAAATAAAACTCCAAATA
Found at i:57840734 original size:59 final size:59
Alignment explanation
Indices: 57840664--57840823 Score: 191
Period size: 59 Copynumber: 2.7 Consensus size: 59
57840654 AATTAGGGTT
* * *
57840664 AAAATGGGA-TTTCAAAAGGTTCGAGGGTAAAATGGTCATTTTTGGTAAAATCGGGATTA
1 AAAATGAGATTTTGAAAA-GTTCGAGGGTAAAATGGTAATTTTTGGTAAAATCGGGATTA
* * * *
57840723 AAAATGAGATTTTTGAAAA-TTCGAGGGTGAAATGGTGATTTTTGGTGAAATCGGGGTTA
1 AAAATGAGA-TTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTAAAATCGGGATTA
* *
57840782 AAAAT-AGAATTTTGAAAAGTTTGGGGGTAAAATGGTAATTTT
1 AAAATGAG-ATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTT
57840824 GGGAAGTTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
58 11 0.13
59 69 0.79
61 7 0.08
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.33
Consensus pattern (59 bp):
AAAATGAGATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTAAAATCGGGATTA
Found at i:57840821 original size:29 final size:29
Alignment explanation
Indices: 57840789--57840852 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
57840779 TTAAAAATAG
*
57840789 AATTTTGAAAAG-TTTGGGGGTAAAATGGT
1 AATTTTGAAAAGTTTTAGGGGTAAAAT-GT
** *
57840818 AATTTTGGGAAGTTTTAGGGTTAAAATGT
1 AATTTTGAAAAGTTTTAGGGGTAAAATGT
57840847 AATTTT
1 AATTTT
57840853 TGGACACTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.41
Consensus pattern (29 bp):
AATTTTGAAAAGTTTTAGGGGTAAAATGT
Found at i:57844499 original size:16 final size:16
Alignment explanation
Indices: 57844478--57844509 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
57844468 AAATCATAAA
57844478 ACCAATATGCTACATT
1 ACCAATATGCTACATT
57844494 ACCAATATGCTACATT
1 ACCAATATGCTACATT
57844510 TGACACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (16 bp):
ACCAATATGCTACATT
Found at i:57846433 original size:26 final size:27
Alignment explanation
Indices: 57846379--57846436 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
57846369 GACAGTTAAA
*
57846379 TTATTAAAATATTGATGATATAAAAAAG
1 TTATTAAAATATTAAT-ATATAAAAAAG
*
57846407 TTATTAAAATATTAAT-TATATAAAAG
1 TTATTAAAATATTAATATATAAAAAAG
57846433 TTAT
1 TTAT
57846437 GAAAGACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 13 0.46
28 15 0.54
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (27 bp):
TTATTAAAATATTAATATATAAAAAAG
Found at i:57846729 original size:2 final size:2
Alignment explanation
Indices: 57846722--57846754 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
57846712 TTCAATTACT
57846722 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
57846755 TAATTTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:57849008 original size:2 final size:2
Alignment explanation
Indices: 57849001--57849032 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
57848991 GACAAAAATT
57849001 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57849033 ATTTTTTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:57849291 original size:19 final size:17
Alignment explanation
Indices: 57849272--57849316 Score: 67
Period size: 15 Copynumber: 2.7 Consensus size: 17
57849262 AGTATATATA
57849272 AAAAAATTATAAATTAAT
1 AAAAAA-TATAAATTAAT
57849290 AAAAAATATAAATT--T
1 AAAAAATATAAATTAAT
57849305 AAAAAATATAAA
1 AAAAAATATAAA
57849317 AACATCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 13 0.48
17 8 0.30
18 6 0.22
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAATATAAATTAAT
Found at i:57849526 original size:18 final size:19
Alignment explanation
Indices: 57849503--57849540 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
57849493 TCTGATATTT
*
57849503 TATAAA-TTATTAGAAACA
1 TATAAACTTATTAAAAACA
57849521 TATAAACTTATTAAAAACA
1 TATAAACTTATTAAAAACA
57849540 T
1 T
57849541 CTAGAATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (19 bp):
TATAAACTTATTAAAAACA
Found at i:57856927 original size:17 final size:18
Alignment explanation
Indices: 57856905--57856942 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
57856895 TCTGTAAAAG
*
57856905 AAACAT-AAATAAACCAA
1 AAACATGAAATAAAACAA
*
57856922 AAACATGAATTAAAACAA
1 AAACATGAAATAAAACAA
57856940 AAA
1 AAA
57856943 TCAAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (18 bp):
AAACATGAAATAAAACAA
Found at i:57856940 original size:18 final size:17
Alignment explanation
Indices: 57856905--57856955 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
57856895 TCTGTAAAAG
*
57856905 AAACATAAATAAACCAA
1 AAACATAAATAAAACAA
*
57856922 AAACATGAATTAAAACAA
1 AAACAT-AAATAAAACAA
*
57856940 AAATCA-AAACAAAACA
1 AAA-CATAAATAAAACA
57856956 TTATTGATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.50
18 12 0.43
19 2 0.07
ACGTcount: A:0.71, C:0.16, G:0.02, T:0.12
Consensus pattern (17 bp):
AAACATAAATAAAACAA
Found at i:57858499 original size:32 final size:32
Alignment explanation
Indices: 57858463--57858529 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
57858453 AAATTCTTTT
57858463 GAGGGTCATGATTAAAGTACATAATTTTATAA
1 GAGGGTCATGATTAAAGTACATAATTTTATAA
* *
57858495 GAGGGTCATGATTTAAGTACATATTTTTATAA
1 GAGGGTCATGATTAAAGTACATAATTTTATAA
57858527 GAG
1 GAG
57858530 TTAAAATGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.06, G:0.21, T:0.36
Consensus pattern (32 bp):
GAGGGTCATGATTAAAGTACATAATTTTATAA
Found at i:57870963 original size:15 final size:15
Alignment explanation
Indices: 57870942--57870975 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
57870932 TTAAAGTAGT
*
57870942 AAAAAAAAAGAAAAAG
1 AAAAAAAAA-AGAAAG
57870958 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
57870973 AAA
1 AAA
57870976 GATAAACGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:57891654 original size:23 final size:23
Alignment explanation
Indices: 57891625--57891671 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
57891615 TGATTTGAAA
* *
57891625 ACTCAAAAGTTTTCATTTCCTTT
1 ACTCAAAAGTTTCCATTGCCTTT
57891648 ACTCAAAAGTTTCCATTGCCTTT
1 ACTCAAAAGTTTCCATTGCCTTT
57891671 A
1 A
57891672 GTTTAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (23 bp):
ACTCAAAAGTTTCCATTGCCTTT
Found at i:57895418 original size:12 final size:13
Alignment explanation
Indices: 57895393--57895422 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
57895383 TTCAAGACAC
57895393 GTTTTTAAGATAT
1 GTTTTTAAGATAT
57895406 GTTTTTAAG-TAT
1 GTTTTTAAGATAT
57895418 GTTTT
1 GTTTT
57895423 ATGCAAGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (13 bp):
GTTTTTAAGATAT
Found at i:57896109 original size:14 final size:15
Alignment explanation
Indices: 57896080--57896112 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
57896070 AGTTTCCCTA
57896080 TGTTTTTAAACTATG
1 TGTTTTTAAACTATG
*
57896095 TGTTTTTAAGC-ATG
1 TGTTTTTAAACTATG
57896109 TGTT
1 TGTT
57896113 GATTCTTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.55
Consensus pattern (15 bp):
TGTTTTTAAACTATG
Found at i:57897131 original size:26 final size:26
Alignment explanation
Indices: 57897097--57897147 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
57897087 GTCCTATTCT
* *
57897097 TTTATTATGAAATCTCTTTGACTATC
1 TTTACTATGAAATCTCATTGACTATC
*
57897123 TTTACTATGAAATTTCATTGACTAT
1 TTTACTATGAAATCTCATTGACTAT
57897148 AACCATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (26 bp):
TTTACTATGAAATCTCATTGACTATC
Found at i:57898368 original size:24 final size:24
Alignment explanation
Indices: 57898336--57898385 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
57898326 ATAATAGTCA
* *
57898336 TTAACATTATTAAATTGTTATATT
1 TTAACATTATTAAACTATTATATT
*
57898360 TTAACATTATTGAACTATTATATT
1 TTAACATTATTAAACTATTATATT
57898384 TT
1 TT
57898386 TTCCATTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (24 bp):
TTAACATTATTAAACTATTATATT
Found at i:57898651 original size:22 final size:22
Alignment explanation
Indices: 57898623--57898691 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
57898613 ACAATAAAAA
*
57898623 TTTTATAATAATTATTT-TTAT
1 TTTTATAATAATTATTTATAAT
57898644 TTTATATAATAATTATTTATAAT
1 TTT-TATAATAATTATTTATAAT
57898667 TTTTATAATACA-T-TTTAT-AT
1 TTTTATAATA-ATTATTTATAAT
57898687 TTTTA
1 TTTTA
57898692 GTACTTTTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
20 7 0.16
21 8 0.18
22 22 0.50
23 7 0.16
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTATAATAATTATTTATAAT
Found at i:57909557 original size:15 final size:15
Alignment explanation
Indices: 57909537--57909565 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
57909527 TTTTGAGATA
57909537 AAAATATTTTTAAAT
1 AAAATATTTTTAAAT
57909552 AAAATATTTTTAAA
1 AAAATATTTTTAAA
57909566 CTTTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAATATTTTTAAAT
Found at i:57911436 original size:13 final size:14
Alignment explanation
Indices: 57911420--57911461 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
57911410 TTTAAATTTT
57911420 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
57911433 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
57911448 ATTTTAAATAATAT
1 ATTTT-AATAATAT
57911462 TCATATATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:57911446 original size:16 final size:16
Alignment explanation
Indices: 57911424--57911460 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
57911414 AATTTTATTT
57911424 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
57911441 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
57911456 TAATA
1 TAATA
57911461 TTCATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:57923618 original size:1 final size:1
Alignment explanation
Indices: 57923609--57923650 Score: 75
Period size: 1 Copynumber: 42.0 Consensus size: 1
57923599 TCAAAACGTT
*
57923609 CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
57923651 GAGAATTCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.02, C:0.98, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:57934214 original size:29 final size:29
Alignment explanation
Indices: 57934178--57934236 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 29
57934168 TCTATATTGC
57934178 TATTTAATCAATTTTAGTAAT-TGTATTTT
1 TATTTAATCAATTTTAGT-ATCTGTATTTT
57934207 TATTTAATCAATTTTAGTATCTGTATTTT
1 TATTTAATCAATTTTAGTATCTGTATTTT
57934236 T
1 T
57934237 CAAATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (29 bp):
TATTTAATCAATTTTAGTATCTGTATTTT
Found at i:57934753 original size:14 final size:13
Alignment explanation
Indices: 57934726--57934771 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
57934716 TTAGGATTTA
*
57934726 AGAAGAAAAGAAG
1 AGAAGAAAAAAAG
57934739 AGAAGAAAAAAA-
1 AGAAGAAAAAAAG
*
57934751 AGAAGAAAAAATTG
1 AGAAGAAAAAA-AG
57934765 AGAAGAA
1 AGAAGAA
57934772 GTTTAAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 11 0.38
13 11 0.38
14 7 0.24
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (13 bp):
AGAAGAAAAAAAG
Found at i:57948415 original size:29 final size:29
Alignment explanation
Indices: 57948348--57948406 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
57948338 GGATTGATAG
*
57948348 TTCAGCTCATCAAAGGGAGACTGAAACCT
1 TTCAGCTCATCAAAGGGAGACTAAAACCT
57948377 TTCAGCTCATCAAAAGGG-GACTAAAACCT
1 TTCAGCTCATC-AAAGGGAGACTAAAACCT
57948406 T
1 T
57948407 AGGACTCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (29 bp):
TTCAGCTCATCAAAGGGAGACTAAAACCT
Found at i:57959200 original size:23 final size:23
Alignment explanation
Indices: 57959174--57959218 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
57959164 ATTTTCTAAT
**
57959174 TTCGAATTATTCGAATCGAGTTA
1 TTCGAATTAAACGAATCGAGTTA
*
57959197 TTCGAGTTAAACGAATCGAGTT
1 TTCGAATTAAACGAATCGAGTT
57959219 GAATTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (23 bp):
TTCGAATTAAACGAATCGAGTTA
Found at i:57959517 original size:42 final size:42
Alignment explanation
Indices: 57959458--57959541 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
57959448 CAAATATTTT
*
57959458 TAAACCCAAATATAATTTCATTCTTCAAA-AACACTCATAAAC
1 TAAACCCAAATATAATTTCATTCCT-AAATAACACTCATAAAC
*
57959500 TAAACCCAAATATAATTTTATTCCTAAATAACACTCATAAAC
1 TAAACCCAAATATAATTTCATTCCTAAATAACACTCATAAAC
57959542 AACTCCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 3 0.08
42 36 0.92
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (42 bp):
TAAACCCAAATATAATTTCATTCCTAAATAACACTCATAAAC
Found at i:57960850 original size:23 final size:23
Alignment explanation
Indices: 57960806--57960880 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
57960796 GCTGGGGAAA
* *
57960806 CAGTAAGC--ACACAGTGCAAAT
1 CAGTAAGCAAACATAGTGCGAAT
*
57960827 CAGTAAGCAAATATAGTGCGAAT
1 CAGTAAGCAAACATAGTGCGAAT
* *
57960850 CAGTAAGCACACATAGTGTTGAA-
1 CAGTAAGCAAACATAGTG-CGAAT
57960873 CAGTAAGC
1 CAGTAAGC
57960881 GCGCTAATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 8 0.18
23 34 0.76
24 3 0.07
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (23 bp):
CAGTAAGCAAACATAGTGCGAAT
Found at i:57962881 original size:112 final size:112
Alignment explanation
Indices: 57962678--57962890 Score: 295
Period size: 112 Copynumber: 1.9 Consensus size: 112
57962668 CTGCAAATAT
* * *
57962678 TAGTACTGAAAAACTTGCTCGTGTTGCCGTTAAACATGGTCTTTTTCAATTTGTAAGACAAAATA
1 TAGTACTGAAAAACTTGCTCATGTTGCCATTAAACATGGTCTTTTTCAATTTATAAGACAAAATA
57962743 TTGTCAATCTTGAACAAAATCGAATTCA-CTGTTTATTTTTGTTATAC
66 TTGTCAATCTTGAACAAAATCGAATTCATC-GTTTATTTTTGTTATAC
* * * * *
57962790 TAGTATTGAGAAACTTGCTTATGTTGCCATTAAACATGGTCTTTTTCAATTTATAAGACACAATG
1 TAGTACTGAAAAACTTGCTCATGTTGCCATTAAACATGGTCTTTTTCAATTTATAAGACAAAATA
** *
57962855 TTGTCTGTCTTGAATAAAAT-GTAATTCATCGTTTAT
66 TTGTCAATCTTGAACAAAATCG-AATTCATCGTTTAT
57962891 GTTCTGATGT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
111 1 0.01
112 86 0.98
113 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (112 bp):
TAGTACTGAAAAACTTGCTCATGTTGCCATTAAACATGGTCTTTTTCAATTTATAAGACAAAATA
TTGTCAATCTTGAACAAAATCGAATTCATCGTTTATTTTTGTTATAC
Found at i:57967900 original size:14 final size:15
Alignment explanation
Indices: 57967881--57967915 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
57967871 TTGTTTGATT
57967881 GAAAATAG-TTTTTG
1 GAAAATAGATTTTTG
57967895 GAAAAT-GATTTTTG
1 GAAAATAGATTTTTG
57967909 GAAAATA
1 GAAAATA
57967916 AATTACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (15 bp):
GAAAATAGATTTTTG
Found at i:57975870 original size:31 final size:32
Alignment explanation
Indices: 57975831--57975907 Score: 81
Period size: 30 Copynumber: 2.5 Consensus size: 32
57975821 TAATGATACA
*
57975831 TTTA-ATCATTAATTTTAATTTCTTTTATTAT
1 TTTAGATCATTAATTTTAATTTCTTTTATCAT
* * *
57975862 TTT-GATCA-TAATTCTATTTTTTTTTATCAT
1 TTTAGATCATTAATTTTAATTTCTTTTATCAT
*
57975892 TTTAGTTC-TTAATTTT
1 TTTAGATCATTAATTTT
57975908 TAACTTTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
30 21 0.57
31 16 0.43
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTAGATCATTAATTTTAATTTCTTTTATCAT
Found at i:57976396 original size:20 final size:20
Alignment explanation
Indices: 57976383--57976424 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
57976373 CACATGAGCT
*
57976383 TGGGGAGAGCCACACGACCG
1 TGGGGAAAGCCACACGACCG
*
57976403 TGGGGAAAGCCACACGGCCG
1 TGGGGAAAGCCACACGACCG
57976423 TG
1 TG
57976425 TGACCCCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.40, T:0.07
Consensus pattern (20 bp):
TGGGGAAAGCCACACGACCG
Found at i:57983119 original size:17 final size:18
Alignment explanation
Indices: 57983075--57983120 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
57983065 AAAAATATAT
57983075 ATATTTAATTA-ATATTTA
1 ATATTT-ATTATATATTTA
57983093 ATATTT-TTATATATTT-
1 ATATTTATTATATATTTA
*
57983109 TTATTTATTATA
1 ATATTTATTATA
57983121 GTTTTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 8 0.32
17 11 0.44
18 6 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTATTATATATTTA
Found at i:57983454 original size:21 final size:21
Alignment explanation
Indices: 57983428--57983472 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
57983418 GAGTTTTCCA
*
57983428 AGCCAAGGAGAATGACGAGAG
1 AGCCAAGGAGAATGACAAGAG
57983449 AGCCAAGGAGAATGACAAGAG
1 AGCCAAGGAGAATGACAAGAG
57983470 AGC
1 AGC
57983473 TTTGTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.16, G:0.36, T:0.04
Consensus pattern (21 bp):
AGCCAAGGAGAATGACAAGAG
Found at i:57983521 original size:14 final size:14
Alignment explanation
Indices: 57983477--57983526 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
57983467 GAGAGCTTTG
57983477 TTTATTTTATAATA
1 TTTATTTTATAATA
* *
57983491 TTTCATTACT-TCA-A
1 TTT-ATT-TTATAATA
57983505 TTTATTTTATAATA
1 TTTATTTTATAATA
57983519 TTTATTTT
1 TTTATTTT
57983527 GTGTATTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
12 1 0.04
13 5 0.18
14 16 0.57
15 5 0.18
16 1 0.04
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTATTTTATAATA
Found at i:57985394 original size:413 final size:413
Alignment explanation
Indices: 57984627--57985424 Score: 1206
Period size: 413 Copynumber: 1.9 Consensus size: 413
57984617 TAGAGCATTG
* *
57984627 TGTCAACCTCTTAAAAATCTCAAATTTTAGATTGATTTAATCTCAATCGTCGATGTAAAGTAAAT
1 TGTCAACCTCTTAAAAATCTCAAATTTTAGATTGATTTAATCTCAACCATCGATGTAAAGTAAAT
* *
57984692 TGTACCATTAAATCTAGAAAAGCTGAATTATAAATAAAAACTTTCCCCTTATTTGTAATCATCCC
66 TGTACCATTAAATCTAGAAAAGCTCAATTATAAATAAAAACTTTCCCCTTATATGTAATCATCCC
* * * *
57984757 ATTGAATCTCATTTCATCCCATTGTGCTCCATATTAATTGAATACTATTGAGAAAATTTATTCAA
131 ATTGAATCTCATTACATCCCATTGTACTCCATATTAATTGAATAATATTGAGAAAATTTACTCAA
*
57984822 ACACTTGGTGTGCTTTTGCTTTCTTGTGACTTCTTCCGTTCTTTCGTTTTATTTTCGGTACCTTA
196 ACACTTGGTGTGCTTTTGCTTTCTTGTGACTTCGTCCGTTCTTTCGTTTTATTTTCGGTACCTTA
* * * *
57984887 GAGAATTTCTATCGAGAATTCTTATTTTGCTAGTGTTATGCAAATTTGAAACCAAAAAATCGCCA
261 GAGAATTTCTATCGAGAATTCTCATTTTGCTAATGTTAGGCAAATTTGAAACAAAAAAATCGCCA
*
57984952 AAAGCCACACGGATTACGAGACTAAAGTTCTAATC-CCATGACAATTAGTATCCAAGCTAAATTT
326 AAAGCCACACGGATTACGAGACTAAAGTTCTAA-CAACATGACAATTAGTATCCAAGCTAAATTT
57985016 CTAACCCCATAACAGTTAGCGCCA
390 CTAACCCCATAACAGTTAGCGCCA
* *
57985040 TGTCAACCTCTTAAGAATCTCAAATTTTAGATTGATTTAATCTCAACCATTGATGTAAAGTAAAT
1 TGTCAACCTCTTAAAAATCTCAAATTTTAGATTGATTTAATCTCAACCATCGATGTAAAGTAAAT
* ** *
57985105 TGTACCATTAAATCTGGAGGAGCTCAATTATAAATAAAAACTTTCCCCCTTATATGTAATCATCT
66 TGTACCATTAAATCTAGAAAAGCTCAATTATAAATAAAAACTTT-CCCCTTATATGTAATCATCC
* *
57985170 TATTGAATCTCATTACATCCCATTGTACTCCATATTAATTGAATAATATTGAGAACATTTACTC-
130 CATTGAATCTCATTACATCCCATTGTACTCCATATTAATTGAATAATATTGAGAAAATTTACTCA
** * *
57985234 AACACTTGGTGTGCTTTTGCTTTCTTGTGGTTTCGTCTGTTCTTTCGTTTTATTTTCGGTGCCTT
195 AACACTTGGTGTGCTTTTGCTTTCTTGTGACTTCGTCCGTTCTTTCGTTTTATTTTCGGTACCTT
* *** *
57985299 -GAAGAATTTCTATTGAGAATTCTCATTTTGCTAATGTTAGGTGGATTTGAAACAAAAAAATTGC
260 AG-AGAATTTCTATCGAGAATTCTCATTTTGCTAATGTTAGGCAAATTTGAAACAAAAAAATCGC
* *** * * *
57985363 CAAAGGTTGCACGGATTGCGAGATTAAAGTTCTAACAACATGACAGTTAGTATCCAAGCTAA
324 CAAAAGCCACACGGATTACGAGACTAAAGTTCTAACAACATGACAATTAGTATCCAAGCTAA
57985425 GGTTCGAAGG
Statistics
Matches: 344, Mismatches: 38, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
412 2 0.01
413 266 0.77
414 76 0.22
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (413 bp):
TGTCAACCTCTTAAAAATCTCAAATTTTAGATTGATTTAATCTCAACCATCGATGTAAAGTAAAT
TGTACCATTAAATCTAGAAAAGCTCAATTATAAATAAAAACTTTCCCCTTATATGTAATCATCCC
ATTGAATCTCATTACATCCCATTGTACTCCATATTAATTGAATAATATTGAGAAAATTTACTCAA
ACACTTGGTGTGCTTTTGCTTTCTTGTGACTTCGTCCGTTCTTTCGTTTTATTTTCGGTACCTTA
GAGAATTTCTATCGAGAATTCTCATTTTGCTAATGTTAGGCAAATTTGAAACAAAAAAATCGCCA
AAAGCCACACGGATTACGAGACTAAAGTTCTAACAACATGACAATTAGTATCCAAGCTAAATTTC
TAACCCCATAACAGTTAGCGCCA
Found at i:57987310 original size:13 final size:13
Alignment explanation
Indices: 57987292--57987317 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57987282 GCATATATTT
57987292 AAAACTTAATAAA
1 AAAACTTAATAAA
57987305 AAAACTTAATAAA
1 AAAACTTAATAAA
57987318 TATAATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAACTTAATAAA
Found at i:57987373 original size:20 final size:20
Alignment explanation
Indices: 57987330--57987371 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
57987320 TAATATTTAT
57987330 AAATTCTAAAAATTTGCAAA
1 AAATTCTAAAAATTTGCAAA
*
57987350 AAATT-TAAAAATTTTCAAA
1 AAATTCTAAAAATTTGCAAA
57987369 AAA
1 AAA
57987372 ATACAATTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (20 bp):
AAATTCTAAAAATTTGCAAA
Found at i:57993492 original size:672 final size:667
Alignment explanation
Indices: 57992198--57993780 Score: 2868
Period size: 672 Copynumber: 2.4 Consensus size: 667
57992188 TAAAGTTCTC
*
57992198 AAAAGAT-GGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAAT-TT
1 AAAAGATGGGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGT
* *
57992261 ATTTTGGAGGGATGCACGCTTACAAGGAAACATTGAAAGAGCCTTTTCATCTATTTTCATTTCAA
66 -TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTCAA
57992326 TTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGA
130 TTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGA
* *
57992391 AAATTTCTTGAAAGGTAACATCATTTCCAACACAGGTTAGAAAGAGCTTTTAAGTTCACAATCAT
195 AAATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAGAAAGAGCTTTTAAGTTCACAATAAT
57992456 GTTTCTTTTTTTTTTTGCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTTTTAT
260 GTTTCTTTTTTTTTTTGCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTTTTAT
* *
57992521 TTAATCTATAATACAATATTTTTCAATTTATATTATATTTTCAGTTCAGATAGAAATGAGTGTTT
325 TTAATCTATAATACAATAATTTTCAATTTATATTATATTTTCAGCTCAGATAGAAATGAGTGTTT
57992586 TCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGGTTAAGAATGAGACTAGGAAGATGAATGAA
390 TCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGGTTAAGAATGAGACTAGGAAGATGAATGAA
57992651 TGCTAAGAATGGTTAGAGTTTGTTCTTGAGTGCCATCGATGAGTGCTTAAGAGAAAGTGTGGTTT
455 TGCTAAGAATGGTTAGAGTTTGTTCTTGAGTGCCATCGATGAGTGCTTAAGAGAAAGTGTGGTTT
57992716 GGATGAGTGATCAACGAGTTTCTTAATGTTTTTAGAATAGATTTGAGTCCCTAATAACAAGTCCC
520 GGATGAGTGATCAACGAGTTTCTTAATGTTTTTAGAATAGATTTGAGTCCCTAATAACAAGTCCC
* *
57992781 TAGTAATTGAGCGATTAGGATTAAATCGTAAAGTTCTCAAAAGTACTAAGCAAAATCAAAATCTT
585 TAGTAATTGAGCGATTAGGATTAAATCATAAAATTCTCAAAAGTACTAAGCAAAATCAAAATCTT
57992846 CTAAAGGTTGATTTTTTTT
650 CTAAAGGTTGA-TTTTTTT
*
57992865 AAAAGATGGGGGTTTTACATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGT
1 AAAAGATGGGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGT
57992930 TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTCAAT
66 TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTCAAT
*
57992995 TAGTTTTCTTTCTAAATTTTCTCAATTTTTCTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGA
131 TAGTTTTCTTTCTAAATTCTCTCAATTTTT-TTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGA
57993060 AAATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAGAAAGAGCTTTTAAGTTCA-ATATAA
195 AAATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAGAAAGAGCTTTTAAGTTCACA-ATAA
57993124 TGTTTCCTTTTTTTTTTTTTGCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTT
259 TGTTT-C--TTTTTTTTTTTGCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTT
57993189 TTATTTAATCTATAATACAATAATTTTCAATTTATATTATATTTTCAGCTCAGATAGAAATGAGT
321 TTATTTAATCTATAATACAATAATTTTCAATTTATATTATATTTTCAGCTCAGATAGAAATGAGT
57993254 GTTTTCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGGTTAAGAATGAGACTAGGAAGATGAA
386 GTTTTCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGGTTAAGAATGAGACTAGGAAGATGAA
* * *
57993319 TGAATGTTGAGAATGGTTAGAGTTTGTTCTTGAGTGCCATTGATGAGTGCTTAAGAGAAAGTGTG
451 TGAATGCTAAGAATGGTTAGAGTTTGTTCTTGAGTGCCATCGATGAGTGCTTAAGAGAAAGTGTG
**
57993384 GTTTGGATGAGTGATCAACGAGTTTCTTAATGTTTTTAGAATAGATTTGAGTCCCTAATAATGAG
516 GTTTGGATGAGTGATCAACGAGTTTCTTAATGTTTTTAGAATAGATTTGAGTCCCTAATAACAAG
*
57993449 TCCCTAGTAATTGAGCGATTAGGATTAAATCATAAAATTCTCAAAAGTACTAAGCAAAATCATAA
581 TCCCTAGTAATTGAGCGATTAGGATTAAATCATAAAATTCTCAAAAGTACTAAGCAAAATCAAAA
*
57993514 TTTTCTAAAGGTTGATTTTTTT
646 TCTTCTAAAGGTTGATTTTTTT
* *
57993536 AAAAGATGGGGGTTTTAAATTGTAAACTACCCAGGGGTCCCATTAGCAAATGGACGTTTAATGGT
1 AAAAGATGGGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGT
*
57993601 TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTTAAT
66 TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTCAAT
*
57993666 TAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTTCATTTTCTTTGAAGTTTTCATTGCAGAGAA
131 TAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGAA
57993731 AATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAG-AAGAGCCTTTT
196 AATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAGAAAGAG-CTTTT
57993781 CATCTATTTT
Statistics
Matches: 884, Mismatches: 24, Indels: 13
0.96 0.03 0.01
Matches are distributed among these distances:
667 7 0.01
668 146 0.17
669 105 0.12
670 79 0.09
671 162 0.18
672 385 0.44
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (667 bp):
AAAAGATGGGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGT
TTTTGGAGGGATGCACGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTCAAT
TAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGAA
AATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAGAAAGAGCTTTTAAGTTCACAATAATG
TTTCTTTTTTTTTTTGCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTTTTATT
TAATCTATAATACAATAATTTTCAATTTATATTATATTTTCAGCTCAGATAGAAATGAGTGTTTT
CTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGGTTAAGAATGAGACTAGGAAGATGAATGAAT
GCTAAGAATGGTTAGAGTTTGTTCTTGAGTGCCATCGATGAGTGCTTAAGAGAAAGTGTGGTTTG
GATGAGTGATCAACGAGTTTCTTAATGTTTTTAGAATAGATTTGAGTCCCTAATAACAAGTCCCT
AGTAATTGAGCGATTAGGATTAAATCATAAAATTCTCAAAAGTACTAAGCAAAATCAAAATCTTC
TAAAGGTTGATTTTTTT
Found at i:57993876 original size:134 final size:134
Alignment explanation
Indices: 57993636--57993913 Score: 540
Period size: 134 Copynumber: 2.1 Consensus size: 134
57993626 GAAACATGGA
57993636 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
1 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
57993701 CATTTTCTTTGAAGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
66 CATTTTCTTTGAAGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
57993766 TTAG
131 TTAG
57993770 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
1 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
*
57993835 CATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
66 CATTTTCTTTGAAGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
57993900 TTAG
131 TTAG
57993904 AAGAG-CTTTT
1 AAGAGCCTTTT
57993914 AAGTTCACAA
Statistics
Matches: 143, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
133 5 0.03
134 138 0.97
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.47
Consensus pattern (134 bp):
AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
CATTTTCTTTGAAGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
TTAG
Found at i:57995373 original size:134 final size:135
Alignment explanation
Indices: 57995119--57995397 Score: 544
Period size: 134 Copynumber: 2.1 Consensus size: 135
57995109 GAAACATGGA
57995119 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
1 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
57995184 TCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAG
66 TCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAG
57995249 ATTAG
131 ATTAG
57995254 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAA-TTTTTTTTT
1 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
57995318 TCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAG
66 TCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAG
57995383 ATTAG
131 ATTAG
57995388 AAGAG-CTTTT
1 AAGAGCCTTTT
57995398 AAGTTCACAA
Statistics
Matches: 144, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
133 5 0.03
134 84 0.58
135 55 0.38
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (135 bp):
AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
TCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAG
ATTAG
Found at i:57995646 original size:818 final size:801
Alignment explanation
Indices: 57994451--57996080 Score: 2669
Period size: 818 Copynumber: 2.0 Consensus size: 801
57994441 GAAACATGGA
* *
57994451 AAGAGCCATTTCATCTATTTTCATTTCAATAGTTTTCTTTCTAAATTTTCTCAATTTTTTCTCTA
1 AAGAGCCTTTTCATCTATTTTCATTTCAATAGTTTTCTTTCTAAATTCTCTCAATTTTTTCTCTA
*
57994516 TTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCATCACAGATT
66 TTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGATT
57994581 AGAAAGAGCTTTTAAGTTCAATATAATGTTTCCTTTTTTTTTTTTTGCAAGACTTGGCTATTAAG
131 AGAAAGAGCTTTTAAGTTCAATATAATGTTTCCTTTTTTTTTTTTTGCAAGACTTGGCTATTAAG
* * *
57994646 AGAGATTTGAGATTTTGAATACTTTTTTATTTAATCTATAATACAATATTTTTCAATTTATATTA
196 AGAGATTTGAGATTTTGAATACTTTTTTATGTAATCTATAATACAATAATTTTCAATTTAGATTA
57994711 TATTTTCAGTTCAGATAGAAATGAGTGTTTTCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAG
261 TA-TTTCAGTTCAGATAGAAATGAGTGTTTTCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAG
* * * * *
57994776 GTTAAGAATGAGACTAGGAAGATGAATGAATGCTGAGAATGGTTAGAGTTTGTTATTGAGTGCCA
325 GTTAACAATGAGACGAGGAAGATAAATGAACGCTGAGAATGGTTAGAGTTTGTTATTGACTGCCA
*
57994841 TTGATGAGTGCTTAAGAGAAAGTGTGGTTTGGATGAGTGATCAACGAGTTTCTTAATGTTTTTAG
390 TCGATGAGTGCTTAAGAGAAAGTGTGGTTTGGATGAGTGATCAACGAGTTTCTTAATGTTTTTAG
* **
57994906 AATAGATTTGAGTCCCTAATAATGAGTCCCTAGTAATTGAGCGATTAGGATTAAATCGTAAAGTT
455 AATAAATTTGAGTCCCTAATAACAAGTCCCTAGTAATTGAGCGATTAGGATTAAATCGTAAAGTT
**
57994971 CTCAAAAGTGCT-AAGCAAAATCATAATTTTCTAAAGGTTGAATTTTT-TAAAAGATGGGGGTTT
520 CTCAAAAGCACTAAAGCAAAATCATAATTTTCTAAAGGTTG-ATTTTTGTAAAAGATGGGGGTTT
57995034 TAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGTTTTTGGAGGAATGCA
584 TAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGTTTTTGGAGGAATGCA
* * *
57995099 CGGTTACAAGGAAACATGGAAAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAA
649 CGCTTACAAGGAAACATGGAAAGAGCCATTTCATCTATTTTCATTTCAATTAGTTTTCTTTCTAA
* *
57995164 ATTCTCTCAATTTTTTTTTTTCATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGG
714 ATTCTCTCAA-TTTTTTCTCT-ATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGG
57995229 TAACATCATTTCCAACACAGATTAG
777 TAACATCATTTCCAACACAGATTAG
* * *
57995254 AAGAGCCTTTTCATCTATTTTCATTTTAATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTTTTT
1 AAGAGCCTTTTCATCTATTTTCATTTCAA-TAGTTTTCTTTCTAAATTCTCTCAATTTTTTCTCT
57995319 CATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
65 -ATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGA
*
57995384 TTAG-AAGAGCTTTTAAGTTCACA-ATCATGTTTCTTTTATTTTCTTTTCTTGTTTTTTATTTTT
129 TTAGAAAGAGCTTTTAAGTTCA-ATATAATG----------TTTC----CTT-TTTTTT-TTTTT
* *
57995447 GCAAGAGTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTTTTATGTAATCTATAATACAT
177 GCAAGACTTGGCTATTAAGAGAGATTTGAGATTTTGAATACTTTTTTATGTAATCTATAATACAA
57995512 TAATTTTCAATTTAGATTATA-TTCAGTTCAGATAGAAATGAGTGTTTTCTTAAGTTCTTTGATG
242 TAATTTTCAATTTAGATTATATTTCAGTTCAGATAGAAATGAGTGTTTTCTTAAGTTCTTTGATG
* *
57995576 TTTCCAGGTTATTTTGAGGTTAACAATGAGAGGAGGAAGATAAATGACCGCTGAGAATGGTTAGA
307 TTTCCAGGTTATTTTGAGGTTAACAATGAGACGAGGAAGATAAATGAACGCTGAGAATGGTTAGA
*
57995641 GTTTGTTCTTGACTGCCATCGATGAGTGCTTAAGAGAAAGTGTGGTTTGGATGAGTGATCAACGA
372 GTTTGTTATTGACTGCCATCGATGAGTGCTTAAGAGAAAGTGTGGTTTGGATGAGTGATCAACGA
57995706 GTTTCTTAATGTTTTTAGAATAAATTTGAGTCCCTAATAACAAGTCCCTAGTAATTGAGCGATTA
437 GTTTCTTAATGTTTTTAGAATAAATTTGAGTCCCTAATAACAAGTCCCTAGTAATTGAGCGATTA
57995771 GGATTAAATCGTAAAGTTCTCAAAAGCACTAAAGCAAAATCATAATTTTCTAAAGGTTGATTTTT
502 GGATTAAATCGTAAAGTTCTCAAAAGCACTAAAGCAAAATCATAATTTTCTAAAGGTTGATTTTT
* * *
57995836 GTAAAAGATGGGGGTTTTACATTGTAAACTACGCAAGGGACCCATTTGCAAATGGACGTTTAATG
567 GTAAAAGATGGGGGTTTTAAATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATG
*
57995901 GTTTTTGGAGGGATGCACGCTTACAAGGAAACATGGAAAGAGCCATTTCATCTATTTTCATTTCA
632 GTTTTTGGAGGAATGCACGCTTACAAGGAAACATGGAAAGAGCCATTTCATCTATTTTCATTTCA
*
57995966 ATTAGTTTTCTTTCTAAATTTTCTCAATTTTTTCTCTATTTTCTTTGAGGTTTTCATTGCAGAGA
697 ATTAGTTTTCTTTCTAAATTCTCTCAATTTTTTCTCTATTTTCTTTGAGGTTTTCATTGCAGAGA
* *
57996031 AAATTTCTTGAAAGGTAGCATCATTTCCAGCACAGATTAG
762 AAATTTCTTGAAAGGTAACATCATTTCCAACACAGATTAG
57996071 AAGAG-CTTTT
1 AAGAGCCTTTT
57996081 AAGTTCACAA
Statistics
Matches: 768, Mismatches: 38, Indels: 29
0.92 0.05 0.03
Matches are distributed among these distances:
803 27 0.04
804 54 0.07
805 68 0.09
814 4 0.01
816 5 0.01
817 71 0.09
818 271 0.35
819 182 0.24
820 86 0.11
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (801 bp):
AAGAGCCTTTTCATCTATTTTCATTTCAATAGTTTTCTTTCTAAATTCTCTCAATTTTTTCTCTA
TTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAACATCATTTCCAACACAGATT
AGAAAGAGCTTTTAAGTTCAATATAATGTTTCCTTTTTTTTTTTTTGCAAGACTTGGCTATTAAG
AGAGATTTGAGATTTTGAATACTTTTTTATGTAATCTATAATACAATAATTTTCAATTTAGATTA
TATTTCAGTTCAGATAGAAATGAGTGTTTTCTTAAGTTCTTTGATGTTTCCAGGTTATTTTGAGG
TTAACAATGAGACGAGGAAGATAAATGAACGCTGAGAATGGTTAGAGTTTGTTATTGACTGCCAT
CGATGAGTGCTTAAGAGAAAGTGTGGTTTGGATGAGTGATCAACGAGTTTCTTAATGTTTTTAGA
ATAAATTTGAGTCCCTAATAACAAGTCCCTAGTAATTGAGCGATTAGGATTAAATCGTAAAGTTC
TCAAAAGCACTAAAGCAAAATCATAATTTTCTAAAGGTTGATTTTTGTAAAAGATGGGGGTTTTA
AATTGTAAACTACCCAAGGGACCCATTAGCAAATGGACGTTTAATGGTTTTTGGAGGAATGCACG
CTTACAAGGAAACATGGAAAGAGCCATTTCATCTATTTTCATTTCAATTAGTTTTCTTTCTAAAT
TCTCTCAATTTTTTCTCTATTTTCTTTGAGGTTTTCATTGCAGAGAAAATTTCTTGAAAGGTAAC
ATCATTTCCAACACAGATTAG
Done.