Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 24 of 193
Found at i:7990439 original size:21 final size:22
Alignment explanation
Indices: 7990413--7990463 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
7990403 TAAAAATAAT
*
7990413 AAAACATATTT-AAATTTTATA
1 AAAACATATTTAAAATTATATA
7990434 AAAACAT-TTTAAAATTATATA
1 AAAACATATTTAAAATTATATA
7990455 AAAATCATA
1 AAAA-CATA
7990464 AAAATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 3 0.12
21 20 0.77
22 3 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAACATATTTAAAATTATATA
Found at i:7990476 original size:18 final size:18
Alignment explanation
Indices: 7990442--7990502 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
7990432 TAAAAACATT
*
7990442 TTAAAATTATATAAAAATCA
1 TTAAAAATAT-TAAAAAT-A
7990462 -TAAAAATATTAAAAATA
1 TTAAAAATATTAAAAATA
* *
7990479 TTAAAAGTATTAAAAGTA
1 TTAAAAATATTAAAAATA
7990497 TTAAAA
1 TTAAAA
7990503 TTGATATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 1 0.03
18 28 0.76
19 8 0.22
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (18 bp):
TTAAAAATATTAAAAATA
Found at i:7990531 original size:9 final size:9
Alignment explanation
Indices: 7990339--7990531 Score: 50
Period size: 9 Copynumber: 20.6 Consensus size: 9
7990329 AAAAAAATTG
*
7990339 AAAATTTAT
1 AAAAATTAT
* *
7990348 ATAAACTTAA
1 A-AAAATTAT
7990358 AAAAATTAT
1 AAAAATTAT
7990367 ACAAAA-TAT
1 A-AAAATTAT
* *
7990376 AAAAGTTCT
1 AAAAATTAT
7990385 AATAAATTAT
1 AA-AAATTAT
****
7990395 ATTTTTTAT
1 AAAAATTAT
*
7990404 AAAAATAAT
1 AAAAATTAT
*
7990413 AAAACATATTT
1 AAAA-AT-TAT
**
7990424 AAATTTTAT
1 AAAAATTAT
*
7990433 AAAAACATTTT
1 -AAAA-ATTAT
*
7990444 AAAATTATAT
1 AAAAAT-TAT
*
7990454 AAAAATCAT
1 AAAAATTAT
7990463 AAAAA-TATT
1 AAAAATTA-T
7990472 AAAAA-TAT
1 AAAAATTAT
* *
7990480 TAAAAGTAT
1 AAAAATTAT
* *
7990489 TAAAAGTAT
1 AAAAATTAT
*
7990498 TAAAATTGAT
1 AAAAATT-AT
* * *
7990508 ATCAACTTGT
1 A-AAAATTAT
7990518 AAAAATTAT
1 AAAAATTAT
7990527 AAAAA
1 AAAAA
7990532 AATCACTAAA
Statistics
Matches: 132, Mismatches: 39, Indels: 26
0.67 0.20 0.13
Matches are distributed among these distances:
8 9 0.07
9 74 0.56
10 38 0.29
11 11 0.08
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7990998 original size:8 final size:9
Alignment explanation
Indices: 7990986--7991139 Score: 87
Period size: 9 Copynumber: 16.3 Consensus size: 9
7990976 AGTTTATATC
7990986 AATTTTAAT
1 AATTTTAAT
*
7990995 ATTTTTAAT
1 AATTTTAAT
* *
7991004 AATTTTTTAC
1 AA-TTTTAAT
*
7991014 AATTTTTTAT
1 AA-TTTTAAT
* *
7991024 TATTTTAAAG
1 AATTTT-AAT
*
7991034 AATTCTAAT
1 AATTTTAAT
*
7991043 -ATGTTT-TT
1 AAT-TTTAAT
*
7991051 CAATTTAAAT
1 -AATTTTAAT
*
7991061 ATTTTTAAT
1 AATTTTAAT
*
7991070 AATTTTTAT
1 AATTTTAAT
*
7991079 AATTTATTAT
1 AATTT-TAAT
7991089 AATTTTAAT
1 AATTTTAAT
*
7991098 AAGTTTATATT
1 AA-TTT-TAAT
7991109 AATTTTAAT
1 AATTTTAAT
*
7991118 ATTTTTAAT
1 AATTTTAAT
7991127 AAATTTTAAT
1 -AATTTTAAT
7991137 AAT
1 AAT
7991140 GAATAATATT
Statistics
Matches: 111, Mismatches: 24, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
8 3 0.03
9 57 0.51
10 46 0.41
11 5 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (9 bp):
AATTTTAAT
Found at i:7991010 original size:10 final size:10
Alignment explanation
Indices: 7990988--7991139 Score: 85
Period size: 10 Copynumber: 16.0 Consensus size: 10
7990978 TTTATATCAA
7990988 TTTTAAT-AT
1 TTTTAATAAT
7990997 TTTTAATAAT
1 TTTTAATAAT
* *
7991007 TTTTTACAAT
1 TTTTAATAAT
* *
7991017 TTTTTATTAT
1 TTTTAATAAT
* *
7991027 TTTAAAGAA-
1 TTTTAATAAT
*
7991036 TTCTAAT-AT
1 TTTTAATAAT
7991045 GTTTT--TCAA-
1 -TTTTAAT-AAT
*
7991054 TTTAAAT-AT
1 TTTTAATAAT
7991063 TTTTAATAAT
1 TTTTAATAAT
7991073 TTTT-ATAAT
1 TTTTAATAAT
7991082 TTATT-ATAA-
1 TT-TTAATAAT
7991091 TTTTAATAAGT
1 TTTTAATAA-T
* *
7991102 TTATATTAA-
1 TTTTAATAAT
7991111 TTTTAAT-AT
1 TTTTAATAAT
*
7991120 TTTTAATAAA
1 TTTTAATAAT
7991130 TTTTAATAAT
1 TTTTAATAAT
7991140 GAATAATATT
Statistics
Matches: 108, Mismatches: 20, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
8 9 0.08
9 42 0.39
10 50 0.46
11 7 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:7991095 original size:11 final size:10
Alignment explanation
Indices: 7990967--7991139 Score: 68
Period size: 10 Copynumber: 18.1 Consensus size: 10
7990957 AATTTTTATT
*
7990967 TTTTTTATAA
1 TTTTATATAA
*
7990977 GTTTATATCAA
1 TTTTATAT-AA
*
7990988 TTTTA-ATAT
1 TTTTATATAA
7990997 TTTTA-ATAA
1 TTTTATATAA
* *
7991006 TTTTTTACAA
1 TTTTATATAA
* *
7991016 TTTTTTATTA
1 TTTTATATAA
* *
7991026 TTTTAAAGAA
1 TTTTATATAA
*
7991036 TTCTA-AT-A
1 TTTTATATAA
7991044 TGTTT-T-TCAA
1 T-TTTATAT-AA
* *
7991054 -TTTAAATAT
1 TTTTATATAA
7991063 TTTTA-ATAA
1 TTTTATATAA
7991072 TTTT-TATAA
1 TTTTATATAA
7991081 -TTTATTATAA
1 TTTTA-TATAA
7991091 TTTTA-ATAA
1 TTTTATATAA
*
7991100 GTTTATATTAA
1 TTTTATA-TAA
*
7991111 TTTTA-ATAT
1 TTTTATATAA
7991120 TTTTA-ATAAA
1 TTTTATAT-AA
7991130 TTTTA-ATAA
1 TTTTATATAA
7991139 T
1 T
7991140 GAATAATATT
Statistics
Matches: 124, Mismatches: 23, Indels: 33
0.69 0.13 0.18
Matches are distributed among these distances:
8 9 0.07
9 48 0.39
10 50 0.40
11 17 0.14
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
TTTTATATAA
Found at i:7991146 original size:29 final size:28
Alignment explanation
Indices: 7991058--7991149 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 28
7991048 TTTCAATTTA
*
7991058 AATATTTTTAAT-AATTTTTATAATTTAT
1 AATATTTTTAATAAATTTTAATAA-TTAT
* * * * *
7991086 TATAATTTTAATAAGTTTATATTAATTTT
1 AATATTTTTAATAAATTT-TAATAATTAT
*
7991115 AATATTTTTAATAAATTTTAATAATGAAT
1 AATATTTTTAATAAATTTTAATAAT-TAT
7991144 AATATT
1 AATATT
7991150 AATTTTTATT
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
28 16 0.33
29 29 0.59
30 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.55
Consensus pattern (28 bp):
AATATTTTTAATAAATTTTAATAATTAT
Found at i:7991159 original size:10 final size:9
Alignment explanation
Indices: 7991061--7991213 Score: 64
Period size: 9 Copynumber: 16.2 Consensus size: 9
7991051 CAATTTAAAT
7991061 ATTTTTAATA
1 ATTTTT-ATA
7991071 ATTTTTATA
1 ATTTTTATA
7991080 ATTTATTATA
1 ATTT-TTATA
*
7991090 ATTTTAATA
1 ATTTTTATA
*
7991099 AGTTTATATTA
1 A-TTTTTA-TA
*
7991110 ATTTTAAT-
1 ATTTTTATA
7991118 ATTTTTAATAA
1 ATTTTT-AT-A
*
7991129 ATTTTAATA
1 ATTTTTATA
**
7991138 ATGAATAATATTA
1 AT---TTTTA-TA
7991151 A-TTTT-T-
1 ATTTTTATA
7991157 ATTTTTATA
1 ATTTTTATA
*
7991166 ATTTTTCTA
1 ATTTTTATA
* *
7991175 TTTTTTTATC
1 -ATTTTTATA
*
7991185 ATTTTTATG
1 ATTTTTATA
*
7991194 ATTTTTAATC
1 ATTTTT-ATA
7991204 A-TTTTATA
1 ATTTTTATA
7991212 AT
1 AT
7991214 AAAATTATTA
Statistics
Matches: 107, Mismatches: 20, Indels: 33
0.67 0.12 0.21
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 9 0.08
9 45 0.42
10 34 0.32
11 8 0.07
12 2 0.02
13 3 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:7991198 original size:19 final size:19
Alignment explanation
Indices: 7991158--7991208 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7991148 TTAATTTTTA
* *
7991158 TTTTTATAATTTTTCTATT
1 TTTTTATCATTTTTATATT
7991177 TTTTTATCATTTTTATGA-T
1 TTTTTATCATTTTTAT-ATT
*
7991196 TTTTAATCATTTT
1 TTTTTATCATTTT
7991209 ATAATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 27 0.96
20 1 0.04
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTATCATTTTTATATT
Found at i:7995420 original size:59 final size:56
Alignment explanation
Indices: 7995283--7995426 Score: 198
Period size: 59 Copynumber: 2.5 Consensus size: 56
7995273 TAATTCATTT
*
7995283 TTTAATAATAATTATATTAAAAATATTATTAAATTATATATTATTTATTAAATTATA
1 TTTAATAATAATTATATT-AAAATATAATTAAATTATATATTATTTATTAAATTATA
** *
7995340 TTTAATAATAATTATGGTAAAATATAATTAAATTATTTATTATTTATTATTAAATTATA
1 TTTAATAATAATTATATTAAAATATAATTAAATTATATATTA--T-TTATTAAATTATA
* *
7995399 TTTAATAATAATTTTATTAAAATTTAAT
1 TTTAATAATAATTATATTAAAATATAAT
7995427 AACAATAATC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
56 22 0.29
57 16 0.21
58 1 0.01
59 37 0.49
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (56 bp):
TTTAATAATAATTATATTAAAATATAATTAAATTATATATTATTTATTAAATTATA
Found at i:7997548 original size:19 final size:19
Alignment explanation
Indices: 7997526--7997568 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7997516 TTTCGAGGGA
7997526 TTTTACCCCTTTT-TTCTTT
1 TTTTACCCCTTTTATT-TTT
**
7997545 TTTTTTCCCTTTTATTTTT
1 TTTTACCCCTTTTATTTTT
7997564 TTTTA
1 TTTTA
7997569 TTTTTTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTACCCCTTTTATTTTT
Found at i:8003782 original size:56 final size:58
Alignment explanation
Indices: 8003722--8003871 Score: 164
Period size: 56 Copynumber: 2.6 Consensus size: 58
8003712 TTTAATATAA
* * **
8003722 TATTTGATATTTGATA-TTTTTTAATTTGGTATTTAAATATTTT-TT-A-TTTAATTTGG
1 TATTTGA-ATTTAATATTTTTTTAATTTGATATTTAAAT-TTTTATTGAGCCTAATTTGG
8003778 TATTTGAATTTAATATTTTTTTAATTTGATATTTAAATTTTTATTGAGCCTAATTTGG
1 TATTTGAATTTAATATTTTTTTAATTTGATATTTAAATTTTTATTGAGCCTAATTTGG
* *
8003836 TATTTGAACTTGACATGTTTTTTTTTAATTTGATAT
1 TATTTGAA-TTTA-A--TATTTTTTTAATTTGATAT
8003872 CTAAGCTTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 10
0.83 0.06 0.10
Matches are distributed among these distances:
55 11 0.14
56 30 0.38
57 1 0.01
58 16 0.20
59 3 0.04
60 1 0.01
62 18 0.22
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (58 bp):
TATTTGAATTTAATATTTTTTTAATTTGATATTTAAATTTTTATTGAGCCTAATTTGG
Found at i:8004393 original size:31 final size:30
Alignment explanation
Indices: 8004323--8004405 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
8004313 AAAAATATTA
* *
8004323 AGTACCAACTTAAGAAAAAATGTCTAGTTC
1 AGTACCAAATTAAGAAAAAATGTCAAGTTC
* * *
8004353 AGGTGCCAAATTAGGAAAAAATGTCAAGTTTG
1 A-GTACCAAATTAAGAAAAAATGTCAAG-TTC
*
8004385 AGTACCAAATTGAACAAAAAA
1 AGTACCAAATT-AAGAAAAAA
8004406 AATTTAATTA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 1 0.02
31 31 0.74
32 10 0.24
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (30 bp):
AGTACCAAATTAAGAAAAAATGTCAAGTTC
Found at i:8004567 original size:18 final size:18
Alignment explanation
Indices: 8004544--8004589 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
8004534 TTTCATGTTG
8004544 TTTTAATTTT-TTATTAAT
1 TTTTAATTTTATTATT-AT
8004562 TTTTAATATTTAGTTATTAT
1 TTTTAAT-TTTA-TTATTAT
8004582 TTTTAATT
1 TTTTAATT
8004590 AATAAACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 7 0.28
19 4 0.16
20 9 0.36
21 5 0.20
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTAATTTTATTATTAT
Found at i:8004638 original size:13 final size:12
Alignment explanation
Indices: 8004611--8004643 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
8004601 TATTTTCAAG
8004611 TTTTT-ATTTTA
1 TTTTTAATTTTA
8004622 TTTTTAATTTATA
1 TTTTTAATTT-TA
8004635 TTTTTAATT
1 TTTTTAATT
8004644 AATAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.25
12 4 0.20
13 11 0.55
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTAATTTTA
Found at i:8004652 original size:17 final size:17
Alignment explanation
Indices: 8004636--8004668 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8004626 TAATTTATAT
8004636 TTTTAATTA-ATAAATA
1 TTTTAATTATATAAATA
*
8004652 TTTTATTTATATAAATA
1 TTTTAATTATATAAATA
8004669 AAATAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTAATTATATAAATA
Found at i:8004689 original size:28 final size:29
Alignment explanation
Indices: 8004643--8004701 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
8004633 TATTTTTAAT
* *
8004643 TAATAAATATTTTATTTATATAAAT-AAAA
1 TAATAAATATTGTAATTATAT-AATGAAAA
8004672 TAATAAATA-TGTAATTATATAATGAAAA
1 TAATAAATATTGTAATTATATAATGAAAA
8004700 TA
1 TA
8004702 TATTTGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 3 0.11
28 15 0.56
29 9 0.33
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (29 bp):
TAATAAATATTGTAATTATATAATGAAAA
Found at i:8005115 original size:44 final size:43
Alignment explanation
Indices: 8005067--8005153 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
8005057 TAAAATCAAA
*
8005067 TAATTAATTCAAAC-ATCATTATTATTTTTATATGTAAAATATTT
1 TAATTAATT-AAACGAT-ATCATTATTTTTATATGTAAAATATTT
** *
8005111 TAATTAATTATTCGATATCATTATTTTTATATGTGAAATATTT
1 TAATTAATTAAACGATATCATTATTTTTATATGTAAAATATTT
8005154 CAAACAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 27 0.71
44 11 0.29
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.52
Consensus pattern (43 bp):
TAATTAATTAAACGATATCATTATTTTTATATGTAAAATATTT
Found at i:8005437 original size:13 final size:12
Alignment explanation
Indices: 8005419--8005451 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
8005409 AATATTTGAC
8005419 ATATAAAAATTAT
1 ATATAAAAA-TAT
8005432 ATATAAAAATAT
1 ATATAAAAATAT
8005444 AT-TAAAAA
1 ATATAAAAA
8005452 ATTAGTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.30
12 5 0.25
13 9 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATATAAAAATAT
Found at i:8005720 original size:12 final size:13
Alignment explanation
Indices: 8005692--8005720 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8005682 GATATATTTG
8005692 TTAATTAAAAATA
1 TTAATTAAAAATA
8005705 TTAATTAAAAAT-
1 TTAATTAAAAATA
8005717 TTAA
1 TTAA
8005721 AAAAACTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TTAATTAAAAATA
Found at i:8005826 original size:14 final size:14
Alignment explanation
Indices: 8005809--8005843 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8005799 AAAAAAACTC
8005809 GTTTTTTAAAAAGT
1 GTTTTTTAAAAAGT
* *
8005823 GTTTTTCAAAAATT
1 GTTTTTTAAAAAGT
8005837 GTTTTTT
1 GTTTTTT
8005844 TTCAAGACCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (14 bp):
GTTTTTTAAAAAGT
Found at i:8010726 original size:51 final size:51
Alignment explanation
Indices: 8010666--8010769 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 51
8010656 ATCGTTCACC
* *
8010666 ATAATTGATTATTTTATAAAAGCTAATATTAAATATACCACAATTTATATA
1 ATAACTGATTATTCTATAAAAGCTAATATTAAATATACCACAATTTATATA
* ** * *
8010717 ATAACTGATTATTCTATAAAAGCTGATATTGGATATCCCACAATTTATGTA
1 ATAACTGATTATTCTATAAAAGCTAATATTAAATATACCACAATTTATATA
8010768 AT
1 AT
8010770 GAGATATGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (51 bp):
ATAACTGATTATTCTATAAAAGCTAATATTAAATATACCACAATTTATATA
Found at i:8011253 original size:22 final size:22
Alignment explanation
Indices: 8011227--8011268 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8011217 TCATCACATG
*
8011227 ATTTAATTTAACTATTAAATTA
1 ATTTAATTTAACAATTAAATTA
*
8011249 ATTTAATTTGACAATTAAAT
1 ATTTAATTTAACAATTAAAT
8011269 ATTAAACACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTTAATTTAACAATTAAATTA
Found at i:8011457 original size:19 final size:20
Alignment explanation
Indices: 8011417--8011459 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8011407 TCGTTAAATA
*
8011417 TTAAAACATGAATATTAGTT
1 TTAAAACATGAATAATAGTT
8011437 TTAAAA-ATGATATAATA-TT
1 TTAAAACATGA-ATAATAGTT
8011456 TTAA
1 TTAA
8011460 TAACTTTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (20 bp):
TTAAAACATGAATAATAGTT
Found at i:8020760 original size:87 final size:87
Alignment explanation
Indices: 8020646--8020818 Score: 283
Period size: 87 Copynumber: 2.0 Consensus size: 87
8020636 GGATTGCAAG
* * *
8020646 CCACTTGGGAATCCCTCCTCGACTTCATCGAGCTTCTCTTTGGCGTCCCCCATGGACTCTTCAAG
1 CCACTTGGGAATCCCTCATCGACTTCATCGAGCTTCTCCTTGACGTCCCCCATGGACTCTTCAAG
8020711 AGTGACCACTGGATTGTCCAAC
66 AGTGACCACTGGATTGTCCAAC
* *
8020733 CCACTTGGGAGTCCCTCATCGACTTCATCGAGCTTCTCCTTGACGTTCCCCATGGACTCTTCAAG
1 CCACTTGGGAATCCCTCATCGACTTCATCGAGCTTCTCCTTGACGTCCCCCATGGACTCTTCAAG
* *
8020798 AGTGACCACTTGATTTTCCAA
66 AGTGACCACTGGATTGTCCAA
8020819 AGTCGACAAT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.19, C:0.34, G:0.18, T:0.29
Consensus pattern (87 bp):
CCACTTGGGAATCCCTCATCGACTTCATCGAGCTTCTCCTTGACGTCCCCCATGGACTCTTCAAG
AGTGACCACTGGATTGTCCAAC
Found at i:8022906 original size:38 final size:37
Alignment explanation
Indices: 8022831--8022914 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 37
8022821 TGTCACAAGT
* **
8022831 CAAAAACCACAATTACCCTAGTGGTAATGGATCGAAA
1 CAAAAATCACAATTACCCTAGTGACAATGGATCGAAA
*
8022868 CAAAAATCACAATTAACCCTAGTGACAAT-GAGTTGAAA
1 CAAAAATCACAATT-ACCCTAGTGACAATGGA-TCGAAA
8022906 CAAAAATCA
1 CAAAAATCA
8022915 TAGTTCTCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
37 15 0.37
38 26 0.63
ACGTcount: A:0.48, C:0.20, G:0.13, T:0.19
Consensus pattern (37 bp):
CAAAAATCACAATTACCCTAGTGACAATGGATCGAAA
Found at i:8024517 original size:14 final size:14
Alignment explanation
Indices: 8024498--8024528 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8024488 AGAATAGATT
8024498 TTTAATTAAGTAAA
1 TTTAATTAAGTAAA
*
8024512 TTTAATTAATTAAA
1 TTTAATTAAGTAAA
8024526 TTT
1 TTT
8024529 TGAAACCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
TTTAATTAAGTAAA
Found at i:8025771 original size:19 final size:19
Alignment explanation
Indices: 8025749--8025791 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
8025739 TCACGTTAGC
8025749 AAAAAAAAAATTAAAGTTA
1 AAAAAAAAAATTAAAGTTA
* * *
8025768 AAAACATAAATTAAATTTA
1 AAAAAAAAAATTAAAGTTA
8025787 AAAAA
1 AAAAA
8025792 GGGTAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (19 bp):
AAAAAAAAAATTAAAGTTA
Found at i:8026839 original size:23 final size:23
Alignment explanation
Indices: 8026806--8026890 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
8026796 AGCTCAAACC
8026806 TTTCTTCTTCTTATTCTTTCCCA
1 TTTCTTCTTCTTATTCTTTCCCA
* ***
8026829 TTTCTTGTTCTTATT-TCAAACC-
1 TTTCTTCTTCTTATTCT-TTCCCA
*
8026851 TTTCTTCTTCTTGTTCTTTCCCA
1 TTTCTTCTTCTTATTCTTTCCCA
* *
8026874 TTTCTTGTTCTTGTTCT
1 TTTCTTCTTCTTATTCT
8026891 CGATTTAGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
22 16 0.33
23 33 0.67
ACGTcount: A:0.08, C:0.26, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTCTTCTTCTTATTCTTTCCCA
Found at i:8026850 original size:45 final size:45
Alignment explanation
Indices: 8026799--8026885 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
8026789 ATCAATAAGC
8026799 TCAAACCTTTCTTCTTCTTATTCTTTCCCATTTCTTGTTCTTATT
1 TCAAACCTTTCTTCTTCTTATTCTTTCCCATTTCTTGTTCTTATT
*
8026844 TCAAACCTTTCTTCTTCTTGTTCTTTCCCATTTCTTGTTCTT
1 TCAAACCTTTCTTCTTCTTATTCTTTCCCATTTCTTGTTCTT
8026886 GTTCTCGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.11, C:0.28, G:0.03, T:0.57
Consensus pattern (45 bp):
TCAAACCTTTCTTCTTCTTATTCTTTCCCATTTCTTGTTCTTATT
Found at i:8027639 original size:33 final size:33
Alignment explanation
Indices: 8027583--8027650 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
8027573 AGATTAATTT
8027583 ATATATCATATATCATTAGATTAAATTACTTAA
1 ATATATCATATATCATTAGATTAAATTACTTAA
* * *
8027616 ATATTTCATGTATCATT-GTATTAAATTATTTAA
1 ATATATCATATATCATTAG-ATTAAATTACTTAA
8027649 AT
1 AT
8027651 TTTATTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.47
Consensus pattern (33 bp):
ATATATCATATATCATTAGATTAAATTACTTAA
Found at i:8029404 original size:24 final size:20
Alignment explanation
Indices: 8029353--8029391 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8029343 AAAACGTATA
*
8029353 AAAAATAACATCCAAACAAC
1 AAAAATAACATCAAAACAAC
8029373 AAAAATAACAATCAAAACA
1 AAAAATAAC-ATCAAAACA
8029392 GCAGCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.69, C:0.21, G:0.00, T:0.10
Consensus pattern (20 bp):
AAAAATAACATCAAAACAAC
Found at i:8029412 original size:43 final size:42
Alignment explanation
Indices: 8029365--8029459 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 42
8029355 AAATAACATC
*
8029365 CAAACAACAAAAATAACAATC-AAAACAGCAGCAAAAATAATAG
1 CAAACAACAAAAA-AACAA-CAAAAACAGCAACAAAAATAATAG
* *
8029408 CAAACAACATTAAAAACAACAAAAACAGTAACAAAAATAATAG
1 CAAACAACA-AAAAAACAACAAAAACAGCAACAAAAATAATAG
8029451 CAAA-AACAA
1 CAAACAACAA
8029460 TACGAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 5 0.11
43 38 0.83
44 3 0.07
ACGTcount: A:0.67, C:0.18, G:0.05, T:0.09
Consensus pattern (42 bp):
CAAACAACAAAAAAACAACAAAAACAGCAACAAAAATAATAG
Found at i:8029487 original size:20 final size:20
Alignment explanation
Indices: 8029473--8029562 Score: 80
Period size: 20 Copynumber: 4.5 Consensus size: 20
8029463 GAAAATAACA
*
8029473 ACCAAAATAGTAAAAAAAGC
1 ACCAAAACAGTAAAAAAAGC
8029493 ACCAAAACAGTAAAAAATA-C
1 ACCAAAACAGTAAAAAA-AGC
* *
8029513 A--AAAACAGCAAAAACATA-A
1 ACCAAAACAGTAAAAA-A-AGC
8029532 ACCAAAACAGTAAAAAAACAGC
1 ACCAAAACAGT-AAAAAA-AGC
8029554 ACCAAAACA
1 ACCAAAACA
8029563 ATAATATAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
18 12 0.21
19 4 0.07
20 18 0.31
21 10 0.17
22 14 0.24
ACGTcount: A:0.67, C:0.20, G:0.07, T:0.07
Consensus pattern (20 bp):
ACCAAAACAGTAAAAAAAGC
Found at i:8031661 original size:30 final size:30
Alignment explanation
Indices: 8031598--8031664 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
8031588 AATAATTTAT
* *
8031598 ATTTTATAATTTTTAAAAGATTAAATTAAA
1 ATTTTATAATTTTTAAAAGACTAAAATAAA
* *
8031628 ATTTTATCATTTTTAAGAAG-CTAAAATATA
1 ATTTTATAATTTTTAA-AAGACTAAAATAAA
8031658 ATTTTAT
1 ATTTTAT
8031665 TGTTACTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (30 bp):
ATTTTATAATTTTTAAAAGACTAAAATAAA
Found at i:8034392 original size:12 final size:11
Alignment explanation
Indices: 8034377--8034467 Score: 60
Period size: 12 Copynumber: 7.9 Consensus size: 11
8034367 ATAACATCAA
8034377 AACAACAAATAT
1 AACAACAAA-AT
*
8034389 AACAACCAAAAC
1 AACAA-CAAAAT
8034401 AACAAC-AAA-
1 AACAACAAAAT
8034410 AACAACAAAAAT
1 AACAAC-AAAAT
*
8034422 AGCAACAAAAAT
1 AACAAC-AAAAT
*
8034434 AACAGCAAAAAT
1 AACAAC-AAAAT
* * *
8034446 AGCACCAAAAC
1 AACAACAAAAT
8034457 AACAACCAAAA
1 AACAA-CAAAA
8034468 CAATAAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
9 6 0.09
10 3 0.05
11 11 0.17
12 41 0.63
13 4 0.06
ACGTcount: A:0.68, C:0.23, G:0.03, T:0.05
Consensus pattern (11 bp):
AACAACAAAAT
Found at i:8034409 original size:24 final size:23
Alignment explanation
Indices: 8034377--8034470 Score: 75
Period size: 24 Copynumber: 4.1 Consensus size: 23
8034367 ATAACATCAA
*
8034377 AACAACAAATATAACAACCAAAAC
1 AACAACAAA-ATAACAACAAAAAC
*
8034401 AACAAC-AAA-AACAACAAAAAT
1 AACAACAAAATAACAACAAAAAC
* * *
8034422 AGCAACAAAAATAACAGCAAAAAT
1 AACAAC-AAAATAACAACAAAAAC
* * * *
8034446 AGCACCAAAACAACAACCAAAAC
1 AACAACAAAATAACAACAAAAAC
8034469 AA
1 AA
8034471 TAAAAAAAGC
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
21 15 0.26
22 1 0.02
23 19 0.33
24 22 0.39
ACGTcount: A:0.68, C:0.23, G:0.03, T:0.05
Consensus pattern (23 bp):
AACAACAAAATAACAACAAAAAC
Found at i:8034413 original size:21 final size:21
Alignment explanation
Indices: 8034374--8034432 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
8034364 AAAATAACAT
*
8034374 CAAAACAACAA-ATATAACAAC
1 CAAAACAACAACA-AAAACAAC
8034395 CAAAACAACAACAAAAACAAC
1 CAAAACAACAACAAAAACAAC
* * *
8034416 AAAAATAGCAACAAAAA
1 CAAAACAACAACAAAAA
8034433 TAACAGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.71, C:0.22, G:0.02, T:0.05
Consensus pattern (21 bp):
CAAAACAACAACAAAAACAAC
Found at i:8034510 original size:21 final size:21
Alignment explanation
Indices: 8034452--8034540 Score: 81
Period size: 22 Copynumber: 4.2 Consensus size: 21
8034442 AAATAGCACC
8034452 AAAACAACAACCAAAACAATAA
1 AAAACAA-AACCAAAACAATAA
** * *
8034474 AAAA-AGCATCACAACAATAA
1 AAAACAAAACCAAAACAATAA
* **
8034494 AAAACAATACCAAAACAGCAA
1 AAAACAAAACCAAAACAATAA
*
8034515 AAAACAAAAACCAAAACAGTAA
1 AAAAC-AAAACCAAAACAATAA
8034537 AAAA
1 AAAA
8034541 ATAGCACTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
20 15 0.28
21 16 0.30
22 22 0.42
ACGTcount: A:0.71, C:0.20, G:0.03, T:0.06
Consensus pattern (21 bp):
AAAACAAAACCAAAACAATAA
Found at i:8039188 original size:58 final size:58
Alignment explanation
Indices: 8039110--8039276 Score: 221
Period size: 58 Copynumber: 2.9 Consensus size: 58
8039100 GATTATTGTT
* *
8039110 ATTAAATTTTAATAAGATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
1 ATTATATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* * *
8039168 ATTATATTTTAACAAAATTATTATTAAATAAAATTTAAT-AAAATAATATATAATTTA
1 ATTATATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* * *
8039225 ATAATATTTTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAA
1 ATTATA-TTTTAATAAAATTATTATT-AAATAT-AATTTAATAAAAATAATAA
8039277 TATATAATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
57 22 0.23
58 52 0.55
59 10 0.11
60 10 0.11
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (58 bp):
ATTATATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
Found at i:8039524 original size:14 final size:14
Alignment explanation
Indices: 8039492--8039520 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8039482 TGCCATTAGC
8039492 TTATATGTTATAAT
1 TTATATGTTATAAT
8039506 TTATATGTTA-AAT
1 TTATATGTTATAAT
8039519 TT
1 TT
8039521 TATAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATATGTTATAAT
Found at i:8040021 original size:30 final size:29
Alignment explanation
Indices: 8039985--8040042 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
8039975 CTGGTTTGCG
8039985 TTGAAGTTATATGAGACAAAGAAACCAGCA
1 TTGAAGTTATATGAGAC-AAGAAACCAGCA
8040015 TTGAAGTTATATGAGACAAGAAACCAGC
1 TTGAAGTTATATGAGACAAGAAACCAGC
8040043 TTGTCGACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (29 bp):
TTGAAGTTATATGAGACAAGAAACCAGCA
Found at i:8043021 original size:19 final size:19
Alignment explanation
Indices: 8042993--8043029 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8042983 CTAGTGATAC
* *
8042993 TTCTATTATAAACATCTAA
1 TTCTACTATAAAAATCTAA
8043012 TTCTACTATAAAAATCTA
1 TTCTACTATAAAAATCTA
8043030 TTTAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (19 bp):
TTCTACTATAAAAATCTAA
Found at i:8043063 original size:29 final size:30
Alignment explanation
Indices: 8043031--8043094 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
8043021 AAAAATCTAT
* *
8043031 TTAAATTAAAT-TTTCTATTATTAAATAGA
1 TTAAATTAAATCTTTATATTATTAAATAAA
*
8043060 TT-AATTTAATCTTTATATTATTAAATAAA
1 TTAAATTAAATCTTTATATTATTAAATAAA
8043089 TTAAAT
1 TTAAAT
8043095 AATATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 7 0.23
29 20 0.67
30 3 0.10
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (30 bp):
TTAAATTAAATCTTTATATTATTAAATAAA
Found at i:8043127 original size:16 final size:15
Alignment explanation
Indices: 8043085--8043119 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8043075 TATTATTAAA
*
8043085 TAAATTAAATAATAT
1 TAAATTAAATAAAAT
8043100 TAAATTAAAATAAAAT
1 TAAATT-AAATAAAAT
8043116 TAAA
1 TAAA
8043120 ATTTAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATTAAATAAAAT
Found at i:8044390 original size:20 final size:21
Alignment explanation
Indices: 8044343--8044394 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8044333 ATGTCAGTCC
* *
8044343 CATGAATAGTGGGGTCAAGTA
1 CATGAACAGTGGAGTCAAGTA
*
8044364 TATGAACAGTGGAGTCAAGT-
1 CATGAACAGTGGAGTCAAGTA
8044384 CATGAACAGTG
1 CATGAACAGTG
8044395 ATAATATGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.23
Consensus pattern (21 bp):
CATGAACAGTGGAGTCAAGTA
Found at i:8049350 original size:41 final size:40
Alignment explanation
Indices: 8049242--8049353 Score: 113
Period size: 37 Copynumber: 2.8 Consensus size: 40
8049232 TCAGATAGTT
*
8049242 CGAAGTAATAAAGTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAGTAA-AAAGTGACACCCAGTGTCTCATCGAACCTAGC
** ** * *
8049282 CGAAGT--AAAGTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAAAAAGTGACACCCAGTGTCTCATCGAACCTAGC
*
8049320 CGAAGTAAAATAATGACACCCAGTGTCTCATCGA
1 CGAAGTAAAA-AGTGACACCCAGTGTCTCATCGA
8049354 CTCAAGGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
37 20 0.36
38 10 0.18
40 8 0.14
41 18 0.32
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (40 bp):
CGAAGTAAAAAGTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:8069251 original size:22 final size:22
Alignment explanation
Indices: 8069190--8069268 Score: 95
Period size: 23 Copynumber: 3.5 Consensus size: 22
8069180 CTGGGGAAAT
*
8069190 AGTAAGCACACATAGTGCAATC
1 AGTAGGCACACATAGTGCAATC
**
8069212 TAGTAGGCACACGCAGTGCAATC
1 -AGTAGGCACACATAGTGCAATC
**
8069235 AGTAGGTGCACATAGTGCAAATC
1 AGTAGGCACACATAGTGC-AATC
8069258 AGTAGGCACAC
1 AGTAGGCACAC
8069269 GAGGTGCGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
22 14 0.30
23 32 0.70
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (22 bp):
AGTAGGCACACATAGTGCAATC
Found at i:8069275 original size:23 final size:22
Alignment explanation
Indices: 8069186--8069307 Score: 85
Period size: 23 Copynumber: 5.4 Consensus size: 22
8069176 AGTGCTGGGG
* *
8069186 AAAT-AGTAAGCACACATAGTGC
1 AAATCAGTAGGCACAC-GAGTGC
8069208 -AATCTAGTAGGCACACGCAGTGC
1 AAATC-AGTAGGCACACG-AGTGC
*
8069231 -AATCAGTAGGTGCACA-TAGTGC
1 AAATCAGTA-G-GCACACGAGTGC
8069253 AAATCAGTAGGCACACGAGGTGC
1 AAATCAGTAGGCACACGA-GTGC
*
8069276 GAAA-CAGTAAGCACACGAAGTGC
1 -AAATCAGTAGGCACACG-AGTGC
8069299 GAAAT-AGTA
1 -AAATCAGTA
8069308 AGCGCGCTAG
Statistics
Matches: 84, Mismatches: 5, Indels: 21
0.76 0.05 0.19
Matches are distributed among these distances:
21 8 0.10
22 11 0.13
23 56 0.67
24 9 0.11
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.16
Consensus pattern (22 bp):
AAATCAGTAGGCACACGAGTGC
Found at i:8069308 original size:23 final size:21
Alignment explanation
Indices: 8069161--8069310 Score: 77
Period size: 23 Copynumber: 6.5 Consensus size: 21
8069151 CGAAGTACTT
8069161 AATAGTAAGCACACAAGTGCTGGGGA
1 AATAGTAAGCACACAAGTGC-----A
8069187 AATAGTAAGCACACATAGTGCA
1 AATAGTAAGCACACA-AGTGCA
* * *
8069209 ATCTAGTAGGCACACGCAGTGC-
1 A-ATAGTAAGCACAC-AAGTGCA
* **
8069231 AATCAGTAGGTGCACATAGTGCA
1 AAT-AGTAAGCACACA-AGTGCA
* *
8069254 AATCAGTAGGCACACGAGGTGCGA
1 AAT-AGTAAGCACAC-AAGTGC-A
*
8069278 AACAGTAAGCACACGAAGTGCGA
1 AATAGTAAGCACAC-AAGTGC-A
8069301 AATAGTAAGC
1 AATAGTAAGC
8069311 GCGCTAGCGT
Statistics
Matches: 102, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.01
22 17 0.17
23 60 0.59
24 4 0.04
26 15 0.15
27 5 0.05
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.16
Consensus pattern (21 bp):
AATAGTAAGCACACAAGTGCA
Found at i:8084776 original size:6 final size:6
Alignment explanation
Indices: 8084765--8084804 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
8084755 TTGATTTTTG
*
8084765 AATTTA AATTT- ATTTTA AATTTA AATTT- AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
8084805 GACTTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 9 0.30
6 21 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
AATTTA
Found at i:8084780 original size:17 final size:17
Alignment explanation
Indices: 8084731--8084804 Score: 94
Period size: 17 Copynumber: 4.2 Consensus size: 17
8084721 TTAAACCCAT
*
8084731 TTTAAGATTTATTTTAAG
1 TTTAA-ATTTATTTTAAA
* *
8084749 TTTAAATTGATTTTTGAA
1 TTTAAATTTA-TTTTAAA
8084767 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
8084784 TTTAAATTTAATTTAAA
1 TTTAAATTTATTTTAAA
8084801 TTTA
1 TTTA
8084805 GACTTATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
17 30 0.61
18 19 0.39
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:8084796 original size:11 final size:12
Alignment explanation
Indices: 8084765--8084804 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 12
8084755 TTGATTTTTG
8084765 AATTTAAATTT-
1 AATTTAAATTTA
*
8084776 ATTTTAAATTTA
1 AATTTAAATTTA
8084788 AATTT-AATTTA
1 AATTTAAATTTA
8084799 AATTTA
1 AATTTA
8084805 GACTTATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTTAAATTTA
Found at i:8085465 original size:3 final size:3
Alignment explanation
Indices: 8085457--8085506 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
8085447 CAATTTCATT
* * *
8085457 TAA TAA TAA TAA TAT TAT TAA TAA TATA TAT TAA TTAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA -TAA TAA TAA TAA
8085504 TAA
1 TAA
8085507 AGGAATTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 35 0.85
4 6 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:8086765 original size:29 final size:30
Alignment explanation
Indices: 8086603--8086868 Score: 337
Period size: 30 Copynumber: 8.9 Consensus size: 30
8086593 CCTAAAAGTT
* * *
8086603 CCTAAAC-TCTCCAAAAATAGTGTTTTAACC
1 CCTAAACTTTTCCAAAATTA-TATTTTAACC
8086633 CCTAAACTTTTCCAAAATTATATTTTAACC
1 CCTAAACTTTTCCAAAATTATATTTTAACC
*
8086663 CCTAAGCTTTTCCAAAATTATATTTTAACC
1 CCTAAACTTTTCCAAAATTATATTTTAACC
*
8086693 CCTAAACTTTTCCAAAATTATATTTTGAA-T
1 CCTAAACTTTTCCAAAATTATATTTT-AACC
*
8086723 CCTAAACTTTTCCAAAATTATATTTTGA-C
1 CCTAAACTTTTCCAAAATTATATTTTAACC
* *
8086752 CCTAAAATTTTCCAAAATTACATTTTAACC
1 CCTAAACTTTTCCAAAATTATATTTTAACC
* *
8086782 CCTAAA-ATTTCCAAAATTACATTTTAACC
1 CCTAAACTTTTCCAAAATTATATTTTAACC
*
8086811 CCTAAACTTTTCCAAAAATTACCATTTT-ACC
1 CCTAAACTTTTCC-AAAATTA-TATTTTAACC
**
8086842 CCTAAA-TTTTCCAAAATTCCATTTTAA
1 CCTAAACTTTTCCAAAATTATATTTTAA
8086869 ACCTCGATTT
Statistics
Matches: 215, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
28 6 0.03
29 61 0.28
30 114 0.53
31 28 0.13
32 6 0.03
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (30 bp):
CCTAAACTTTTCCAAAATTATATTTTAACC
Found at i:8086885 original size:59 final size:58
Alignment explanation
Indices: 8086765--8086982 Score: 235
Period size: 59 Copynumber: 3.7 Consensus size: 58
8086755 AAAATTTTCC
* ** *
8086765 AAAATTA-CATTTTAACCCCTAAAATTTCCAAAATTACATTTTAACCCCTAAACTTTTCCA
1 AAAATTACCATTTT-ACCCCTAAAATTTCCAAAATTACATTTTAA-ACCTCGA-TTTACCA
* *
8086825 AAAATTACCATTTTACCCCTAAATTTTCCAAAATTCCATTTTAAACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCTAAAATTTCCAAAATTACATTTTAAACCTCGATTT-ACCA
* * * * * *
8086884 AAAGTTACCATTTTACCCCTGAACTTTCTAAAATTTCATTTT-TACCTCGATTTACCA
1 AAAATTACCATTTTACCCCTAAAATTTCCAAAATTACATTTTAAACCTCGATTTACCA
* **
8086941 AAAATTACCATTTTGCCCC-AAAAAGTCCAAAATTACTATTTT
1 AAAATTACCATTTTACCCCTAAAATTTCCAAAATTAC-ATTTT
8086983 GCCTCCGGGT
Statistics
Matches: 135, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
56 11 0.08
57 26 0.19
58 13 0.10
59 44 0.33
60 35 0.26
61 6 0.04
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCTAAAATTTCCAAAATTACATTTTAAACCTCGATTTACCA
Found at i:8086952 original size:29 final size:29
Alignment explanation
Indices: 8086822--8086954 Score: 82
Period size: 29 Copynumber: 4.6 Consensus size: 29
8086812 CTAAACTTTT
** *
8086822 CCAAAAATTACCA-TTTTACCCCTAAATTTT
1 CCAAAAATTACCATTTTTA--CCTCGATTTA
*
8086852 CC-AAAATT-CCATTTTAAACCTCGATTTCA
1 CCAAAAATTACCATTTT-TACCTCGATTT-A
* *
8086881 CCAAAAGTTACCA-TTTTACCCCTGAACTTT-
1 CCAAAAATTACCATTTTTACCTC-G-A-TTTA
* *
8086911 -CTAAAATT-TCATTTTTACCTCGATTTA
1 CCAAAAATTACCATTTTTACCTCGATTTA
8086938 CCAAAAATTACCATTTT
1 CCAAAAATTACCATTTT
8086955 GCCCCAAAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 25
0.67 0.11 0.22
Matches are distributed among these distances:
26 3 0.04
27 1 0.01
28 20 0.26
29 35 0.45
30 12 0.15
31 4 0.05
32 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.38
Consensus pattern (29 bp):
CCAAAAATTACCATTTTTACCTCGATTTA
Found at i:8087133 original size:17 final size:16
Alignment explanation
Indices: 8087094--8087124 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8087084 CGTGTTCGTT
8087094 TCATTTT-TTTGCTTA
1 TCATTTTATTTGCTTA
8087109 TCATTTTATTTGCTTA
1 TCATTTTATTTGCTTA
8087125 GTTATTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TCATTTTATTTGCTTA
Found at i:8101322 original size:16 final size:15
Alignment explanation
Indices: 8101301--8101345 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
8101291 TACATTTATG
8101301 TTTATTTCTTTTTTA
1 TTTATTTCTTTTTTA
8101316 CTTTATTTCTTCTTTTA
1 -TTTATTTCTT-TTTTA
* *
8101333 TCTGTTTCTTTTT
1 TTTATTTCTTTTT
8101346 AGATTCTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 3 0.12
16 18 0.69
17 5 0.19
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTATTTCTTTTTTA
Found at i:8109862 original size:20 final size:22
Alignment explanation
Indices: 8109804--8109851 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
8109794 GGATCTGAGG
*
8109804 AAAAATAAAAG-AAACAGAATT
1 AAAAATAAAAGAAAATAGAATT
8109825 AAAAATAAAAGAAAATAGAATT
1 AAAAATAAAAGAAAATAGAATT
8109847 AAAAA
1 AAAAA
8109852 ATAGAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAATT
Found at i:8112230 original size:21 final size:21
Alignment explanation
Indices: 8112206--8112256 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8112196 ATAGATGCCT
*
8112206 TAGTTTTCTTTTAAAAATCCA
1 TAGTTTGCTTTTAAAAATCCA
* *
8112227 TAGTTTGCTTTTGAAAATCTA
1 TAGTTTGCTTTTAAAAATCCA
*
8112248 TAGATTGCT
1 TAGTTTGCT
8112257 GTTGAAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (21 bp):
TAGTTTGCTTTTAAAAATCCA
Found at i:8112261 original size:21 final size:21
Alignment explanation
Indices: 8112219--8112263 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8112209 TTTTCTTTTA
* *
8112219 AAAATCCATAGTTTGCTTTTG
1 AAAATCCATAGATTGCTGTTG
*
8112240 AAAATCTATAGATTGCTGTTG
1 AAAATCCATAGATTGCTGTTG
8112261 AAA
1 AAA
8112264 TTCAAGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.38
Consensus pattern (21 bp):
AAAATCCATAGATTGCTGTTG
Found at i:8114522 original size:31 final size:30
Alignment explanation
Indices: 8114487--8114569 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
8114477 TAAACATAAA
8114487 TTAAATATAAATTTAAATAATAAATAATATC
1 TTAAATATAAATTTAAATAA-AAATAATATC
* * *
8114518 TTAAATGTTAAATCCT-AATAAAAATAATATT
1 TTAAAT-ATAAAT-TTAAATAAAAATAATATC
* *
8114549 TTAAA-ATAAAATAAAATAAAA
1 TTAAATATAAATTTAAATAAAA
8114570 TAAAATAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
29 11 0.26
31 20 0.48
32 10 0.24
33 1 0.02
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (30 bp):
TTAAATATAAATTTAAATAAAAATAATATC
Found at i:8114560 original size:5 final size:5
Alignment explanation
Indices: 8114550--8114579 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8114540 AATAATATTT
8114550 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
8114580 CCAAGTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8116073 original size:13 final size:12
Alignment explanation
Indices: 8116055--8116092 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
8116045 TTTCCTGGAC
8116055 ATAAAATAAATAA
1 ATAAAATAAA-AA
8116068 ATAAAATAGAAAA
1 ATAAAATA-AAAA
8116081 ATAAAATAAAAA
1 ATAAAATAAAAA
8116093 TAATTGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 4 0.17
13 18 0.75
14 2 0.08
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:8118493 original size:6 final size:6
Alignment explanation
Indices: 8118456--8118531 Score: 54
Period size: 6 Copynumber: 13.2 Consensus size: 6
8118446 TTCAACTCAT
* * * *
8118456 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAG TTTAAA TTTATA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
8118502 TTTAAA TTTAAA ATT--A TTATAAA TTTAAA T
1 TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA T
8118532 AAAGAAAAGT
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
4 2 0.04
5 10 0.19
6 39 0.72
7 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:8118513 original size:35 final size:34
Alignment explanation
Indices: 8118456--8118531 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 34
8118446 TTCAACTCAT
* * *
8118456 TTTAAATTTATTTTAAGATTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAGATTAAAATTATTATAAA
8118490 TTTAAATTTATATTTAA-ATTTAAAATTATTATAAA
1 TTTAAATTTAT-TTTAAGA-TTAAAATTATTATAAA
8118525 TTTAAAT
1 TTTAAAT
8118532 AAAGAAAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 12 0.32
35 25 0.68
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (34 bp):
TTTAAATTTATTTTAAGATTAAAATTATTATAAA
Found at i:8118526 original size:17 final size:17
Alignment explanation
Indices: 8118456--8118531 Score: 100
Period size: 17 Copynumber: 4.4 Consensus size: 17
8118446 TTCAACTCAT
8118456 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
*
8118474 -TTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAA
8118490 TTTAAATTTATATTTAAA
1 TTTAAATTTAT-TTTAAA
* *
8118508 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
8118525 TTTAAAT
1 TTTAAAT
8118532 AAAGAAAAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
17 36 0.71
18 15 0.29
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:8118680 original size:70 final size:70
Alignment explanation
Indices: 8118576--8118721 Score: 240
Period size: 70 Copynumber: 2.1 Consensus size: 70
8118566 GCCCAATTGA
* * *
8118576 GCCCAAGTTTCAAAGTAACGCAAACCTAAGCCTAATGGACCTAAATAGGCCCAACCTAAAACCCA
1 GCCCAAGTTTCAAAGTAACCCAAACCTAAGCCTAATGGACCCAAACAGGCCCAACCTAAAACCCA
*
8118641 AGCGG
66 AACGG
8118646 GCCCAAGTTTCAAAGTAACCCAAACCTCAA-CCTAATGGACCCAAACAGGCCCAACCTAAAACCC
1 GCCCAAGTTTCAAAGTAACCCAAACCT-AAGCCTAATGGACCCAAACAGGCCCAACCTAAAACCC
8118710 AAACGG
65 AAACGG
8118716 GCCCAA
1 GCCCAA
8118722 TTTTAATTGA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
70 69 0.97
71 2 0.03
ACGTcount: A:0.39, C:0.34, G:0.15, T:0.12
Consensus pattern (70 bp):
GCCCAAGTTTCAAAGTAACCCAAACCTAAGCCTAATGGACCCAAACAGGCCCAACCTAAAACCCA
AACGG
Found at i:8119270 original size:30 final size:29
Alignment explanation
Indices: 8119227--8119305 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 29
8119217 TGAACTGTCC
* *
8119227 AAAAATCATATTTTGACCCCCAAACTTTCT
1 AAAAATTACATTTTGACCCCCAAACTTT-T
* * *
8119257 AAAAATTACATTTTTACCCTCGAACTTTT
1 AAAAATTACATTTTGACCCCCAAACTTTT
* *
8119286 CAAAATTCCATTTTTGACCC
1 AAAAATTACA-TTTTGACCC
8119306 AAAAAATCTC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 9 0.22
30 31 0.77
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCCCAAACTTTT
Found at i:8119331 original size:59 final size:57
Alignment explanation
Indices: 8119214--8119422 Score: 176
Period size: 59 Copynumber: 3.6 Consensus size: 57
8119204 CCTGGGAGGT
* ** *
8119214 CCCTGAACTGTCCAAAAA-T-CATATTTTGACCCCCAAACTTTCTAAAAATTA-CATTTTTA
1 CCCTGAACT-TCCAAAAATTCCAT-TTTTGA-CCCAAAAAATTC-GAAAATTACCA-TTTTA
*
8119273 CCCTCGAACTTTTC-AAAATTCCATTTTTGACCCAAAAAATCTCGAAAATTACCATTTTA
1 CCCT-GAAC-TTCCAAAAATTCCATTTTTGACCCAAAAAAT-TCGAAAATTACCATTTTA
** * *
8119332 CCCATGAACTTCCAAAAATTCCATTTTTGACCTTAAAACTTCTAAAATTTACCATTTTA
1 CCC-TGAACTTCCAAAAATTCCATTTTTGACCCAAAAAATTCGAAAA-TTACCATTTTA
* * *
8119391 CCCTGGA-TGTCTAAAAACTCCATTTTTGACCC
1 CCCTGAACT-TCCAAAAATTCCATTTTTGACCC
8119423 CGGACGTTCC
Statistics
Matches: 126, Mismatches: 14, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
57 1 0.01
58 32 0.25
59 71 0.56
60 18 0.14
61 4 0.03
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (57 bp):
CCCTGAACTTCCAAAAATTCCATTTTTGACCCAAAAAATTCGAAAATTACCATTTTA
Found at i:8119349 original size:29 final size:30
Alignment explanation
Indices: 8119317--8119393 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
8119307 AAAAATCTCG
*
8119317 AAAATTACCATTTTACCCAT-GAACTTCCA
1 AAAATTACCATTTTACCCATAAAACTTCCA
* *
8119346 AAAATT-CCATTTTTGA-CCTTAAAACTTCTA
1 AAAATTACCA-TTTT-ACCCATAAAACTTCCA
*
8119376 AAATTTACCATTTTACCC
1 AAAATTACCATTTTACCC
8119394 TGGATGTCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
28 3 0.08
29 14 0.36
30 19 0.49
31 3 0.08
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTACCATTTTACCCATAAAACTTCCA
Found at i:8119407 original size:29 final size:29
Alignment explanation
Indices: 8119375--8119469 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 29
8119365 TAAAACTTCT
8119375 AAAATTTACCATTTTACCCTGGATGTCTA
1 AAAATTTACCATTTTACCCTGGATGTCTA
* * * *
8119404 AAAA-CT-CCATTTTTGACCCCGGACGT-TCC
1 AAAATTTACCA-TTTT-ACCCTGGATGTCT-A
*
8119433 AAAATTTACCATTTTACCGTCGGATGTCTA
1 AAAATTTACCATTTTACCCT-GGATGTCTA
8119463 AAAATTT
1 AAAATTT
8119470 CATTTTTGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
27 3 0.06
28 6 0.12
29 20 0.40
30 17 0.34
31 4 0.08
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (29 bp):
AAAATTTACCATTTTACCCTGGATGTCTA
Found at i:8119415 original size:58 final size:57
Alignment explanation
Indices: 8119287--8119480 Score: 194
Period size: 59 Copynumber: 3.3 Consensus size: 57
8119277 CGAACTTTTC
* * * *
8119287 AAAATTCCATTTTTGACCCAAAAAATCTCGAAAA-TTACCATTTTACCCATGAACT-TCCA
1 AAAATTCCATTTTTGA-CCAAAAACT-TCCAAAATTTACCATTTTACCC-TGGA-TGTCTA
* *
8119346 AAAATTCCATTTTTGACCTTAAAACTTCTAAAATTTACCATTTTACCCTGGATGTCTA
1 AAAATTCCATTTTTGACC-AAAAACTTCCAAAATTTACCATTTTACCCTGGATGTCTA
* **** *
8119404 AAAACTCCATTTTTGACCCCGGACGTTCCAAAATTTACCATTTTACCGTCGGATGTCTA
1 AAAATTCCATTTTTGACCAAAAAC-TTCCAAAATTTACCATTTTACCCT-GGATGTCTA
*
8119463 AAAATTTCATTTTTGACC
1 AAAATTCCATTTTTGACC
8119481 CCGAGCCTTC
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
57 3 0.03
58 53 0.46
59 60 0.52
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (57 bp):
AAAATTCCATTTTTGACCAAAAACTTCCAAAATTTACCATTTTACCCTGGATGTCTA
Found at i:8119479 original size:59 final size:58
Alignment explanation
Indices: 8119317--8119506 Score: 188
Period size: 59 Copynumber: 3.3 Consensus size: 58
8119307 AAAAATCTCG
* * * *** ** *
8119317 AAAA-TTACCATTTTACCCATGAACT-TCCAAAAATTCCATTTTTGACCTTAAAACTTCT
1 AAAATTTACCATTTTACCC-TGGA-TGTCTAAAAACTCCATTTTTGACCCCGAGCCTTCC
*
8119375 AAAATTTACCATTTTACCCTGGATGTCTAAAAACTCCATTTTTGACCCCG-GACGTTCC
1 AAAATTTACCATTTTACCCTGGATGTCTAAAAACTCCATTTTTGACCCCGAG-CCTTCC
* * *
8119433 AAAATTTACCATTTTACCGTCGGATGTCTAAAAATTTCATTTTTGACCCCGAGCCTTCC
1 AAAATTTACCATTTTACCCT-GGATGTCTAAAAACTCCATTTTTGACCCCGAGCCTTCC
* *
8119492 AAAAATCACCATTTT
1 AAAATTTACCATTTT
8119507 TCTTGAGTGT
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
57 1 0.01
58 49 0.44
59 60 0.54
60 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (58 bp):
AAAATTTACCATTTTACCCTGGATGTCTAAAAACTCCATTTTTGACCCCGAGCCTTCC
Found at i:8126710 original size:98 final size:97
Alignment explanation
Indices: 8126540--8127466 Score: 782
Period size: 98 Copynumber: 9.5 Consensus size: 97
8126530 CTGAGAAAAA
* * * * *
8126540 CGAAGACACAAGGGAAAGATCTAAGCCACAATGGCGGATCTAGTACCACGAAAACACGACGGGAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACAC-AAGGGAA
* ** *
8126605 AGATCTAAGACCGTAACGGTGGATCTAGTACCG
65 AGATCTAAGACCGCAACGACGGATCCAGTACCG
* ** * * * *
8126638 GGAAGACACCAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCATGAAAACATGACGAGAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACA-CAAGGGAA
* * * *
8126703 AGATCTAAGACCGCAATGGCAGATCCAGTACTG
65 AGATCTAAGACCGCAACGACGGATCCAGTACCG
* ** *
8126736 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCAGATTTAGTACCACAAAAACACAAGGGAAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGAAA
* * *
8126801 GATCTAAG-CCGCGACGACGGATCCAGTGCCA
66 GATCTAAGACCGCAACGACGGATCCAGTACCG
* * ** * *
8126832 CAAAAACATGACGGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGA
1 CGAAGACACCA-GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGA
* * *
8126897 AAGTTCTAAG-CCACGACGACGGATCCAGTACCG
64 AAGATCTAAGACCGCAACGACGGATCCAGTACCG
**
8126930 CGAAGACACCAGGGAAAGATCTAAGCCGCAACAACGGATCCAGTACCACGAAAACAC-AGGGAAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGAAA
* *
8126994 GATCTAAG-CCGCGATA-G-CGGATCTAGTACCA
66 GATCTAAGACCGC-A-ACGACGGATCCAGTACCG
* * * * * * * *
8127025 CAAAAACATGTC-GGGAAAGATCTAAGATCACAACGGCGAATCCAGTACCGCGAAGACACAAGGG
1 CGAAGACA--CCAGGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACGAAAACACAAGGG
* *
8127089 AAAGATCTAAG-CCGGGATA-G-CGGATCCAGTACCA
63 AAAGATCTAAGACC-GCA-ACGACGGATCCAGTACCG
* * * * * * ** * *
8127123 CGAAAACACGACGGGAAAGATCTAAGACCGGAATGACGAATCCAGTACTGCGAAGACACAACGGA
1 CGAAGACACCA-GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGA
* ** * * * *
8127188 AAGATCTCAG-CTACGACGGCGGATCCAATACCA
64 AAGATCTAAGACCGCAACGACGGATCCAGTACCG
* * * ** * * *
8127221 CGAAGACACAAGGGAAAGACCTAATCTTCAATGGTGGATCCAATACCACGAAAACACAATGGGAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACAA-GGGAA
* ** *
8127286 AGATTTAAGACCGCAACGGTGGATCCAGTACTG
65 AGATCTAAGACCGCAACGACGGATCCAGTACCG
* * * * * *
8127319 CGAAGACACAAGGGAAAGATCTAAGCCACGATGGCGGAT-CAGTACCACGAAGACATAAGGGAAA
1 CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGAAA
* * * * *
8127383 GATCTAAG-TCGCAACGGCAGATTCAGTACCA
66 GATCTAAGACCGCAACGACGGATCCAGTACCG
** * *
8127414 CGAAGACATGAAGGTAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAA
1 CGAAGACA-CCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAA
8127467 GATTTGAAAG
Statistics
Matches: 680, Mismatches: 131, Indels: 37
0.80 0.15 0.04
Matches are distributed among these distances:
95 60 0.09
96 131 0.19
97 121 0.18
98 367 0.54
99 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.25, T:0.12
Consensus pattern (97 bp):
CGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACAAGGGAAA
GATCTAAGACCGCAACGACGGATCCAGTACCG
Found at i:8126822 original size:146 final size:146
Alignment explanation
Indices: 8126551--8127468 Score: 943
Period size: 146 Copynumber: 6.3 Consensus size: 146
8126541 GAAGACACAA
* * * *
8126551 GGGAAAGATCTAAG-CCACAATGGCGGATCTAGTACCACGAAAACACGACGGGAAAGATCTAAGA
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACAC-AAGGGAAAGATCTAAG-
** * * ** * ** *
8126615 CCGTAACGGTGGATCTAGTACCGGGAAGACACCAGGGAAAGATCTAAGCCATAACGGCGGATCCA
64 CCACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCA
*
8126680 GTACCATGAAAACATGAC
129 GTACCACGAAAACATGAC
* * ** *
8126698 GAGAAAGATCTAAGACCGCAATGGCAGATCCAGTACTGCGAAGACACCAGGGAAAGATCTAAGCC
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC
* * ** * * *
8126763 GCAACGGCAGATTTAGTACCACAAAAACACAAGGGAAAGATCTAAGCCGCGACGACGGATCCAGT
66 ACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCAGT
* *
8126828 GCCACAAAAACATGAC
131 ACCACGAAAACATGAC
*
8126844 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGTTCTAAGCC
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC
* * * * *
8126909 ACGACGACGGATCCAGTACCGCGAAGACACCAGGGAAAGATCTAAGCCGCAACAACGGATCCAGT
66 ACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCAGT
*
8126974 ACCACGAAAACA-CA-
131 ACCACGAAAACATGAC
* * * * * ***
8126988 GGGAAAGATCTAAG-CCGCGATAGCGGATCTAGTACCACAAAAACATGTCGGGAAAGATCTAAGA
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACA-CAAGGGAAAGATCTAAG-
* * * *
8127052 TCACAACGGCGAATCCAGTACCGCGAAGACACAAGGGAAAGATCTAAGCCGGGATA-G-CGGATC
64 CCACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC-GCA-ACGACGGATC
*
8127115 CAGTACCACGAAAACACGAC
127 CAGTACCACGAAAACATGAC
* * * ** * * *
8127135 GGGAAAGATCTAAGACCGGAATGACGAATCCAGTACTGCGAAGACACAACGGAAAGATCTCAGCT
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC
* * * * ** * ** *
8127200 ACGACGGCGGATCCAATACCACGAAGACACAAGGGAAAGACCTAATCTTCAATGGTGGATCCAAT
66 ACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCAGT
** *
8127265 ACCACGAAAACACAAT
131 ACCACGAAAACATGAC
* * * **
8127281 GGGAAAGATTTAAGACCGCAACGGTGGATCCAGTACTGCGAAGACACAAGGGAAAGATCTAAGCC
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC
* * * * * * *
8127346 ACGATGGCGGAT-CAGTACCACGAAGACATAAGGGAAAGATCTAAGTCGCAACGGCAGATTCAGT
66 ACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCAGT
* *
8127410 ACCACGAAGACATGAA
131 ACCACGAAAACATGAC
* * *
8127426 GGTAAAGATCTAAG-CCGCGACGGCGGATCCAGTACCACGAAGA
1 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGA
8127469 TTTGAAAGGA
Statistics
Matches: 636, Mismatches: 125, Indels: 23
0.81 0.16 0.03
Matches are distributed among these distances:
143 26 0.04
144 53 0.08
145 134 0.21
146 322 0.51
147 54 0.08
148 47 0.07
ACGTcount: A:0.38, C:0.24, G:0.25, T:0.12
Consensus pattern (146 bp):
GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCC
ACAACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGCAACGACGGATCCAGT
ACCACGAAAACATGAC
Found at i:8127852 original size:100 final size:100
Alignment explanation
Indices: 8127595--8128274 Score: 1056
Period size: 100 Copynumber: 6.7 Consensus size: 100
8127585 AACTACAATG
* * * *
8127595 GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGAGTAAGATGAAGCTTCAAACATAAATTCTTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
8127660 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATA
66 CTCTTGAAGTTGCAGTAAAGTTGGATT-AAAA-AATA
* *
8127697 GCAAGTGTTTATCTCTGTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
* *
8127762 CTCTTGAAGTTACAATAAAGTTGGATTAAAAAATA
66 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
* *
8127797 GCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
8127862 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
66 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
*
8127897 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACATCAATTCCTCCT
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAA-T--TCCT
** *
8127962 ATTGTCTTGAAGTTGTAGTAAAGTTGGATTAAAAAATA
63 ATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
*
8128000 GCAAGTCTTTATCTCTTTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
*
8128065 CTCTTGAAGTTGTAGTAAAGTTGGATTAAAAAATA
66 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
* * * *
8128100 GCAAGTCTTTATCTCTTTGAATTTGTAGTAAGAGCAAGATAAAGCTTCAAACATCAATTCCTATT
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
8128165 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATA
66 CTCTTGAAGTTGCAGTAAAGTTGGATT-AAAA-AATA
* * * *
8128202 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGGAAGGTGAAGCTTC-GACATCAAATCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
* *
8128266 TTCATGAAG
66 CTCTTGAAG
8128275 ATGTAGTGGA
Statistics
Matches: 535, Mismatches: 38, Indels: 11
0.92 0.07 0.02
Matches are distributed among these distances:
100 280 0.52
101 29 0.05
102 132 0.25
103 94 0.18
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (100 bp):
GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATA
Found at i:8128035 original size:203 final size:200
Alignment explanation
Indices: 8127595--8128274 Score: 1074
Period size: 203 Copynumber: 3.4 Consensus size: 200
8127585 AACTACAATG
* * * *
8127595 GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGAGTAAGATGAAGCTTCAAACATAAATTCTTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
* *
8127660 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTGTTTATCTCTGTGAAGTTGTAG
66 CTCTTGAAGTTGCAGTAAAGTTGGATT-AAAA-AATAGCAAGTCTTTATCTCTCTGAAGTTGTAG
* * * *
8127725 TAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTACAATAAAGTTGGATTA
129 TAAGAGCAAGATAAAGCTTCAAACATCAATTCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATTA
8127790 AAAAATA
194 AAAAATA
* *
8127797 GCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
8127862 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTA
66 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTA
* *
8127927 AGAGCAAGATAAAGCTTCAAACATCAATTCCTCCTATTGTCTTGAAGTTGTAGTAAAGTTGGATT
131 AGAGCAAGATAAAGCTTCAAACATCAA-T--TCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATT
8127992 AAAAAATA
193 AAAAAATA
*
8128000 GCAAGTCTTTATCTCTTTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
* * *
8128065 CTCTTGAAGTTGTAGTAAAGTTGGATTAAAAAATAGCAAGTCTTTATCTCTTTGAATTTGTAGTA
66 CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTA
8128130 AGAGCAAGATAAAGCTTCAAACATCAATTCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATTAAA
131 AGAGCAAGATAAAGCTTCAAACATCAATTCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATT-AA
8128195 AACAATA
195 AA-AATA
* * * *
8128202 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGGAAGGTGAAGCTTC-GACATCAAATCCTATC
1 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
* *
8128266 TTCATGAAG
66 CTCTTGAAG
8128275 ATGTAGTGGA
Statistics
Matches: 444, Mismatches: 29, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
200 90 0.20
201 30 0.07
202 136 0.31
203 188 0.42
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (200 bp):
GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATC
CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTA
AGAGCAAGATAAAGCTTCAAACATCAATTCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATTAAA
AAATA
Found at i:8128111 original size:303 final size:305
Alignment explanation
Indices: 8127589--8128262 Score: 1081
Period size: 303 Copynumber: 2.2 Consensus size: 305
8127579 GATCAAAACT
* * * *
8127589 ACAATGGCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGAGTAAGATGAAGCTTCAAACATAAATT
1 ACAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATT
*
8127654 -CTTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTGTTTATCTCTGTGAA
66 CCTTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTATCTCTGTGAA
8127718 GTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTACAATAAAGT
131 GTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTACAATAAAGT
*
8127783 TGGATTAAAAAATAGCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAA
196 TGGATTAAAAAATAGCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAA
8127848 CATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATT-AAA
261 CATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAA
*
8127892 A-AATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAACATCAATT
1 ACAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATT
** * *
8127956 CCTCCTATTGTCTTGAAGTTGTAGTAAAGTTGGATT-AAAA-AATAGCAAGTCTTTATCTCTTTG
66 CCT--TATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTATCTCTGTG
** *
8128019 AAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAA
129 AAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTACAATAAA
* ** *
8128084 GTTGGATTAAAAAATAGCAAGTCTTTATCTCTTTGAATTTGTAGTAAGAGCAAGATAAAGCTTCA
194 GTTGGATTAAAAAATAGCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATAAAGCTTCA
*
8128149 AACATCAATTCCTATTCTCTTGAAGTTGCAGTAAAGTTGGATTAAAA
259 AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAA
* * * *
8128196 ACAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGGAAGGTGAAGCTTC-GACATCAAAT
1 ACAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATT
8128260 CCT
66 CCT
8128263 ATCTTCATGA
Statistics
Matches: 342, Mismatches: 24, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
302 58 0.17
303 188 0.55
304 19 0.06
305 77 0.23
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (305 bp):
ACAATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATT
CCTTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTATCTCTGTGAA
GTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCCTCTTGAAGTTACAATAAAGT
TGGATTAAAAAATAGCAAATCTTTATCTCTCGGAAGTTGTAGTAAGAGCAAGATAAAGCTTCAAA
CATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATTAAAA
Found at i:8128399 original size:39 final size:39
Alignment explanation
Indices: 8128348--8128604 Score: 160
Period size: 39 Copynumber: 6.6 Consensus size: 39
8128338 ATGAAGATTC
* * *
8128348 TGATATCTTACCCCGCGCTTGGGGCAGATTGCAA-CCATT
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTG-AAGCCATT
* * * * * * **
8128387 TGATCTTTTACCCCAAGCGTGGGGCAGA-TCATCGTCAAC
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTGA-AGCCATT
** * * * *
8128426 CAATCTCTTACCTCAAGCCTGAGGCAAATTGAAGCCATT
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTGAAGCCATT
* *
8128465 TGATCTTTTACCCCGAGCCTGGGGCTGATTGAAGCCATT
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTGAAGCCATT
* * * * **
8128504 TGATCTCTTGCCCCGAGCCTGGGGCAGA-TCATCGTCAAC
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTGA-AGCCATT
** ** * * *
8128543 CAATCTCTTACCCCGAGCCAAGGGTAGATTAAAGCTATT
1 TGATCTCTTACCCCGAGCCTGGGGCAGATTGAAGCCATT
* *
8128582 CGATCTCTTACCCCGAGCTTGGG
1 TGATCTCTTACCCCGAGCCTGGG
8128605 ATAGATCATC
Statistics
Matches: 159, Mismatches: 54, Indels: 10
0.71 0.24 0.04
Matches are distributed among these distances:
37 1 0.01
38 3 0.02
39 151 0.95
40 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (39 bp):
TGATCTCTTACCCCGAGCCTGGGGCAGATTGAAGCCATT
Found at i:8128554 original size:78 final size:78
Alignment explanation
Indices: 8128467--8128651 Score: 228
Period size: 78 Copynumber: 2.4 Consensus size: 78
8128457 AAGCCATTTG
* * * * * *
8128467 ATCTTTTACCCCGAGCCTGGGGCTGATTGAAGCCATTTGATCTCTTGCCCCGAGCCTGGGGCAGA
1 ATCTCTTACCCCGAGCCTAGGGCTGATTAAAGCCATTCGATCTCTTACCCCGAGCCTGGGACAGA
*
8128532 TCATCGTCAACCA
66 TCATCATCAACCA
* * * *
8128545 ATCTCTTACCCCGAGCCAAGGG-TAGATTAAAGCTATTCGATCTCTTACCCCGAGCTTGGGATAG
1 ATCTCTTACCCCGAGCCTAGGGCT-GATTAAAGCCATTCGATCTCTTACCCCGAGCCTGGGACAG
*
8128609 ATCATCATCAACTA
65 ATCATCATCAACCA
* *
8128623 ATCTCCTACCCCGAGCCTAGGGCAGATTA
1 ATCTCTTACCCCGAGCCTAGGGCTGATTA
8128652 TAGTTAACCA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
77 1 0.01
78 89 0.99
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTAGGGCTGATTAAAGCCATTCGATCTCTTACCCCGAGCCTGGGACAGA
TCATCATCAACCA
Found at i:8128587 original size:117 final size:117
Alignment explanation
Indices: 8128344--8128604 Score: 328
Period size: 117 Copynumber: 2.2 Consensus size: 117
8128334 CAAAATGAAG
* * * *
8128344 ATTCTGATATCTTACCCCGCGCTTGGGGCAGATTGCAACCATTTGATCTTTTACCCCAAGCGTGG
1 ATTC-GATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTTGATCTCTTACCCCAAGCCTGG
* * *
8128409 GGCAGATCATCGTCAACCAATCTCTTACCTCAAGCCTGAGGCAAATTGAAGCC
65 GGCAGATCATCGTCAACCAATCTCTTACCCCAAGCCAGAGGCAAATTAAAGCC
* * * * * *
8128462 ATTTGATCTTTTACCCCGAGCCTGGGGCTGATTG-AAGCCATTTGATCTCTTGCCCCGAGCCTGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCAA-CCATTTGATCTCTTACCCCAAGCCTGG
* * * *
8128526 GGCAGATCATCGTCAACCAATCTCTTACCCCGAGCCA-AGGGTAGATTAAAGCT
65 GGCAGATCATCGTCAACCAATCTCTTACCCCAAGCCAGA-GGCAAATTAAAGCC
8128579 ATTCGATCTCTTACCCCGAGCTTGGG
1 ATTCGATCTCTTACCCCGAGCTTGGG
8128605 ATAGATCATC
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
116 3 0.02
117 115 0.95
118 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (117 bp):
ATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTTGATCTCTTACCCCAAGCCTGGG
GCAGATCATCGTCAACCAATCTCTTACCCCAAGCCAGAGGCAAATTAAAGCC
Found at i:8129060 original size:11 final size:12
Alignment explanation
Indices: 8129044--8129136 Score: 61
Period size: 11 Copynumber: 8.1 Consensus size: 12
8129034 AATTCAACTC
8129044 ATTTTAAATTT-
1 ATTTTAAATTTA
8129055 ATTTTAAGA-TTA
1 ATTTTAA-ATTTA
* *
8129067 AATTT-ATTTTA
1 ATTTTAAATTTA
*
8129078 AATTTAAATTTA
1 ATTTTAAATTTA
*
8129090 A-TTTAAGTTTA
1 ATTTTAAATTTA
* *
8129101 AATTTATATTTA
1 ATTTTAAATTTA
* *
8129113 AATTTAAAATT-
1 ATTTTAAATTTA
*
8129124 ATTATAAATTTA
1 ATTTTAAATTTA
8129136 A
1 A
8129137 ATAAAGAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
11 36 0.55
12 29 0.45
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (12 bp):
ATTTTAAATTTA
Found at i:8129069 original size:17 final size:17
Alignment explanation
Indices: 8129046--8129138 Score: 125
Period size: 17 Copynumber: 5.4 Consensus size: 17
8129036 TTCAACTCAT
8129046 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
8129064 -TTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
8129080 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
8129097 TTTAAATTTATATTTAAA
1 TTTAAATTTAT-TTTAAA
* *
8129115 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
8129132 TTTAAAT
1 TTTAAAT
8129139 AAAGAAAAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
16 1 0.02
17 50 0.76
18 15 0.23
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:8129083 original size:6 final size:6
Alignment explanation
Indices: 8129046--8129138 Score: 81
Period size: 6 Copynumber: 16.2 Consensus size: 6
8129036 TTCAACTCAT
* *
8129046 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
8129091 TTTAAG TTTAAA TTTATA TTTAAA TTTAAA ATT--A TTATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA
8129138 T
1 T
8129139 AAAGAAAAGT
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
4 2 0.03
5 15 0.22
6 49 0.71
7 3 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:8129131 original size:29 final size:29
Alignment explanation
Indices: 8129046--8129138 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 29
8129036 TTCAACTCAT
* * *
8129046 TTTAAATTT-ATTTTAAGATTAAATTT-AT
1 TTTAAATTTAAATTTAA-ATTAAGTTTAAA
*
8129074 TTTAAATTTAAATTTAATTTAAGTTTAAA
1 TTTAAATTTAAATTTAAATTAAGTTTAAA
*
8129103 TTTATATTTAAATTTAAAATT-A-TTATAAA
1 TTTAAATTTAAATTT-AAATTAAGTT-TAAA
8129132 TTTAAAT
1 TTTAAAT
8129139 AAAGAAAAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
28 18 0.33
29 32 0.59
30 4 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (29 bp):
TTTAAATTTAAATTTAAATTAAGTTTAAA
Found at i:8129844 original size:30 final size:29
Alignment explanation
Indices: 8129778--8130043 Score: 191
Period size: 30 Copynumber: 9.0 Consensus size: 29
8129768 TGGAGGTCCC
* * *
8129778 TAAACTATCCCAAAATCATATTTTGACCC-
1 TAAACT-TTCCAAAATTACATTTTGACCCT
* *
8129807 AAAACTTTTCCAAAATTACATTTTAACCCT
1 TAAAC-TTTCCAAAATTACATTTTGACCCT
* * *
8129837 TAAACTTTTCCAATATTATATTTTGACCCC
1 TAAAC-TTTCCAAAATTACATTTTGACCCT
* * *
8129867 CAAACTTTTCTAAAATTACATTTTGACACT
1 TAAAC-TTTCCAAAATTACATTTTGACCCT
* * *
8129897 TAAACTTTTCAAAAATTACATTTTTACCCC
1 TAAAC-TTTCCAAAATTACATTTTGACCCT
* * *
8129927 CAAACTTTCCAAAATTCCATTTTTGACCCA
1 TAAACTTTCCAAAATTACA-TTTTGACCCT
* ** *
8129957 AAAACTCACGAAAATTACCATTTT-ACCCT
1 TAAACTTTCCAAAATTA-CATTTTGACCCT
* *
8129986 TAAAC-TTCCAAAAATTCCATTTTGACCCC
1 TAAACTTTCC-AAAATTACATTTTGACCCT
*
8130015 AAAAC-TTCCAAAATTTACCATTTT-ACCCT
1 TAAACTTTCCAAAA-TTA-CATTTTGACCCT
8130044 AAATGTCTAA
Statistics
Matches: 188, Mismatches: 41, Indels: 16
0.77 0.17 0.07
Matches are distributed among these distances:
28 11 0.06
29 66 0.35
30 109 0.58
31 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.35
Consensus pattern (29 bp):
TAAACTTTCCAAAATTACATTTTGACCCT
Found at i:8129886 original size:60 final size:60
Alignment explanation
Indices: 8129789--8129949 Score: 218
Period size: 60 Copynumber: 2.7 Consensus size: 60
8129779 AAACTATCCC
* * * *
8129789 AAAATCATATTTTGA-CCCAAAACTTTTCCAAAATTACATTTTAACCCTTAAACTTTTCC
1 AAAATTATATTTTGACCCCCAAACTTTTCCAAAATTACATTTTAACACTTAAACTTTTCA
* * *
8129848 AATATTATATTTTGACCCCCAAACTTTTCTAAAATTACATTTTGACACTTAAACTTTTCA
1 AAAATTATATTTTGACCCCCAAACTTTTCCAAAATTACATTTTAACACTTAAACTTTTCA
* * *
8129908 AAAATTACATTTTTACCCCCAAAC-TTTCCAAAATTCCATTTT
1 AAAATTATATTTTGACCCCCAAACTTTTCCAAAATTACATTTT
8129950 TGACCCAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
59 29 0.33
60 60 0.67
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (60 bp):
AAAATTATATTTTGACCCCCAAACTTTTCCAAAATTACATTTTAACACTTAAACTTTTCA
Found at i:8129973 original size:59 final size:58
Alignment explanation
Indices: 8129908--8130042 Score: 170
Period size: 58 Copynumber: 2.3 Consensus size: 58
8129898 AAACTTTTCA
8129908 AAAATTA-CATTTTTACCCCCAAACTTTCC-AAAATTCCATTTTTGACCCAAAAACTCACG
1 AAAATTACCA-TTTTACCCCCAAAC-TTCCAAAAATTCCA-TTTTGACCCAAAAACTCACG
** *
8129967 AAAATTACCATTTTACCCTTAAACTTCCAAAAATTCCATTTTGACCCCAAAACTTC-C-
1 AAAATTACCATTTTACCCCCAAACTTCCAAAAATTCCATTTTGACCCAAAAAC-TCACG
8130024 AAAATTTACCATTTTACCC
1 AAAA-TTACCATTTTACCC
8130043 TAAATGTCTA
Statistics
Matches: 69, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
57 4 0.06
58 33 0.48
59 30 0.43
60 2 0.03
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCAAACTTCCAAAAATTCCATTTTGACCCAAAAACTCACG
Found at i:8130033 original size:58 final size:59
Alignment explanation
Indices: 8129878--8130155 Score: 239
Period size: 59 Copynumber: 4.7 Consensus size: 59
8129868 AAACTTTTCT
* * * * *
8129878 AAAATTACA-TTTTGACACTTAAACTTTTCAAAAATTA-CATTTTTACCCCCAAACTTTCC-
1 AAAATTCCATTTTTGACCCTAAAAC-TTCCAAAAATTACCA-TTTTACCCCCAAA-TGTCCA
* * **
8129937 AAAATTCCATTTTTGACCCAAAAAC-TCACGAAAATTACCATTTTACCCTTAAACT-TCCA
1 AAAATTCCATTTTTGACCCTAAAACTTC-CAAAAATTACCATTTTACCCCCAAA-TGTCCA
* * * *
8129996 AAAATTCCA-TTTTGACCCCAAAACTTCCAAAATTTACCATTTTA-CCCTAAATGTCTA
1 AAAATTCCATTTTTGACCCTAAAACTTCCAAAAATTACCATTTTACCCCCAAATGTCCA
* * * * * ** *
8130053 AAAACTCCATTTTTGATCTTGAACCTTCC-AAAATTAACCATTTTACCCCCGGATGTCTA
1 AAAATTCCATTTTTGACCCTAAAACTTCCAAAAATT-ACCATTTTACCCCCAAATGTCCA
**
8130112 AAAATTCCATTTTTGACCCTAAGCCTTCCAAAAATTACCATTTT
1 AAAATTCCATTTTTGACCCTAAAACTTCCAAAAATTACCATTTT
8130156 GCCCTGAGTG
Statistics
Matches: 181, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
56 1 0.01
57 22 0.12
58 56 0.31
59 82 0.45
60 20 0.11
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (59 bp):
AAAATTCCATTTTTGACCCTAAAACTTCCAAAAATTACCATTTTACCCCCAAATGTCCA
Found at i:8138280 original size:9 final size:9
Alignment explanation
Indices: 8138266--8138290 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8138256 TCATAGGATA
8138266 TCTTTAATC
1 TCTTTAATC
8138275 TCTTTAATC
1 TCTTTAATC
8138284 TCTTTAA
1 TCTTTAA
8138291 GTTATATCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (9 bp):
TCTTTAATC
Found at i:8145507 original size:15 final size:16
Alignment explanation
Indices: 8145479--8145509 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8145469 TTCCTTCTTC
8145479 TCTTTTTTCTTTCCTT
1 TCTTTTTTCTTTCCTT
8145495 TCTTTTTTC-TTCCTT
1 TCTTTTTTCTTTCCTT
8145510 CTTAGGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TCTTTTTTCTTTCCTT
Found at i:8152480 original size:13 final size:13
Alignment explanation
Indices: 8152462--8152489 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8152452 AATATAGGGG
8152462 AAAATGTACCATT
1 AAAATGTACCATT
8152475 AAAATGTACCATT
1 AAAATGTACCATT
8152488 AA
1 AA
8152490 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:8153605 original size:16 final size:16
Alignment explanation
Indices: 8153578--8153622 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
8153568 TTTTAATTTT
8153578 TTATTT-ACTTTTCAG
1 TTATTTCACTTTTCAG
8153593 TTATTTCACTTTTCAG
1 TTATTTCACTTTTCAG
8153609 TTATTTCACTTTTC
1 TTATTTCACTTTTC
8153623 GTCGTGTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 6 0.21
16 23 0.79
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.60
Consensus pattern (16 bp):
TTATTTCACTTTTCAG
Found at i:8154032 original size:11 final size:11
Alignment explanation
Indices: 8154005--8154034 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
8153995 AACTCGTGCA
8154005 TCCAAAAACAC
1 TCCAAAAACAC
8154016 TCCCAAAAACAC
1 T-CCAAAAACAC
8154028 TCCAAAA
1 TCCAAAA
8154035 CCTTCATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.53, C:0.37, G:0.00, T:0.10
Consensus pattern (11 bp):
TCCAAAAACAC
Found at i:8159355 original size:22 final size:22
Alignment explanation
Indices: 8159313--8159356 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8159303 GTTCAAAGGA
* *
8159313 AATAGAATTTAACTAATTTTTC
1 AATAGAATTTAACAAAGTTTTC
8159335 AATA-AATTTCAACAAAGTTTTC
1 AATAGAATTT-AACAAAGTTTTC
8159357 TCTTAGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (22 bp):
AATAGAATTTAACAAAGTTTTC
Found at i:8163518 original size:12 final size:11
Alignment explanation
Indices: 8163492--8163529 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
8163482 AGCAACCATG
8163492 TTTTTT-TCTT
1 TTTTTTCTCTT
*
8163502 CTTTTTCTCCTT
1 TTTTTTCT-CTT
8163514 TTTTTTCTCTT
1 TTTTTTCTCTT
8163525 TTTTT
1 TTTTT
8163530 CTTTTCGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 5 0.21
11 9 0.38
12 10 0.42
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:8173333 original size:41 final size:41
Alignment explanation
Indices: 8172725--8173340 Score: 572
Period size: 41 Copynumber: 15.0 Consensus size: 41
8172715 TGGTATGTCC
*
8172725 TCAATCTGCCC-TC-TGATT-AGGGT-AAAGATTGG-ATGCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAAT-CT
** * * *
8172762 TCAATCCACCCCTCTTGATTAGGGGTAAAAGATTGGAATGGCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAAT--CT
* * * *
8172805 TCAATCTGCCCCTAC-TAACTAGGGGTAAAAGACTGGAATCT
1 TCAATCTG-CCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* * * * * *
8172846 TCAATCTACCCCTCTTGATTAGGGGAAAAAGATTGCAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* * *
8172887 TCAATCTGTCCC-TCTTAATTAGGGGTAAAAGATTGGAATGGCT
1 TCAATCTG-CCCTTCTTGATTAAGGGTAAAAGACTGGAAT--CT
* * * * * *
8172930 TTAATTTGTCCC-TCTATAATTTTAGGGTAAAAGA-TCGAAACCT
1 TCAATCTG-CCCTTCT-TGA-TTAAGGGTAAAAGACT-GGAATCT
* * * *
8172973 TCGATCTGCCTTTCTTGATTAAGAGTAAAATACTGGAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* *
8173014 TCAGTCTGCCCTTCTTGATTAAGGGTAAAAGA-TCGAAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACT-GGAATCT
* * *
8173055 TCAATCTGCCCCTCTTAATTAGGGGTAAAAGACTGGAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* ** * *
8173096 TCAATCTACCCTTCTTGATTAAGAATAAAAGA-TCGAAACCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACT-GGAATCT
* *
8173137 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACCGAAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* *
8173178 TTAATCTGCCCCTCTTGATTAAGGGTAAAAGACTGGAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* * *
8173219 TCAATCTGCCCTTCTTGATTAAGGATAAAAGA-TCGAAACCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACT-GGAATCT
*
8173260 TCAATTTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
* * *
8173301 TTAATCTACCCTTCTTGATTAAGGGTAAAAGACTGAAATC
1 TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATC
8173341 GGGATTAAAA
Statistics
Matches: 478, Mismatches: 79, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
37 9 0.02
38 2 0.00
39 5 0.01
40 11 0.02
41 361 0.76
42 12 0.03
43 55 0.12
44 8 0.02
45 15 0.03
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (41 bp):
TCAATCTGCCCTTCTTGATTAAGGGTAAAAGACTGGAATCT
Found at i:8173393 original size:30 final size:30
Alignment explanation
Indices: 8173346--8173629 Score: 186
Period size: 29 Copynumber: 9.6 Consensus size: 30
8173336 AAATCGGGAT
**
8173346 TAAAAATGGAA-TTTTGGTGAGTTCGGGGG
1 TAAAAATGGAATTTTTGGAAAGTTCGGGGG
* *
8173375 T-AAAATGGTAATTTTTGGTAAA-ATCGGGGT
1 TAAAAATGG-AATTTTTGG-AAAGTTCGGGGG
* * **
8173405 TAAAAATAGAA-TTTTAGAAAGTTTAGGGG
1 TAAAAATGGAATTTTTGGAAAGTTCGGGGG
*
8173434 T-AAAATGGTAATTTTTGG-AAGTTTC-GAGG
1 TAAAAATGG-AATTTTTGGAAAG-TTCGGGGG
*
8173463 TCGAAAATGGAA-TTTTGGAAAGTTCGGGGG
1 T-AAAAATGGAATTTTTGGAAAGTTCGGGGG
* *
8173493 T-AAAATGGTAATTTTTGGTGAAA--TCGAGGT
1 TAAAAATGG-AATTTTT-G-GAAAGTTCGGGGG
* *
8173523 TAAAAATAGAA-TTTTGGAAAGTTTGGGGG
1 TAAAAATGGAATTTTTGGAAAGTTCGGGGG
*
8173552 T-AAAATGGTAATTTTTGG-AAGTTTCGGGGT
1 TAAAAATGG-AATTTTTGGAAAG-TTCGGGGG
* *
8173582 TAAAAATGGAATTTTTTGAAA--TCTTGGGG
1 TAAAAATGGAATTTTTGGAAAGTTC-GGGGG
* *
8173611 TCAAAATGCAATTTTTGGA
1 TAAAAATGGAATTTTTGGA
8173630 TTGTTTGGGG
Statistics
Matches: 200, Mismatches: 30, Indels: 50
0.71 0.11 0.18
Matches are distributed among these distances:
27 4 0.02
28 32 0.16
29 66 0.33
30 64 0.32
31 30 0.15
32 4 0.02
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.35
Consensus pattern (30 bp):
TAAAAATGGAATTTTTGGAAAGTTCGGGGG
Found at i:8173399 original size:59 final size:57
Alignment explanation
Indices: 8173336--8173596 Score: 306
Period size: 59 Copynumber: 4.4 Consensus size: 57
8173326 TAAAAGACTG
**
8173336 AAATCGGGATTAAAAATGGAATTTTGGTGAGTTCGGGGGTAAAATGGTAATTTTTGGTA
1 AAATCGGG-TTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGG-A
* * **
8173395 AAATCGGGGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGA
1 AAATC-GGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGA
** ** *
8173453 AGTTTCGAGGTCGAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTG
1 A-AATCG-GGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGG-A
* *
8173513 AAATCGAGGTTAAAAATAGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGA
1 AAATCG-GGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGA
**
8173571 AGTTTCGGGGTTAAAAATGGAATTTT
1 A-AATC-GGGTTAAAAATGGAATTTT
8173597 TTGAAATCTT
Statistics
Matches: 171, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
58 4 0.02
59 162 0.95
60 5 0.03
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (57 bp):
AAATCGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGA
Found at i:8173556 original size:118 final size:118
Alignment explanation
Indices: 8173347--8173596 Score: 419
Period size: 118 Copynumber: 2.1 Consensus size: 118
8173337 AATCGGGATT
** *
8173347 AAAAATGGAATTTTGGTGAGTTCGGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAAT
1 AAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAAT
8173412 AGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTC
66 AGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTC
* *
8173465 GAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAAT
1 AAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAAT
* * * *
8173530 AGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGAAGTTTCGGGGTT
66 AGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTC
8173583 AAAAATGGAATTTT
1 AAAAATGGAATTTT
8173597 TTGAAATCTT
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 122 1.00
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (118 bp):
AAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAAT
AGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTC
Found at i:8173611 original size:59 final size:57
Alignment explanation
Indices: 8173338--8173629 Score: 302
Period size: 59 Copynumber: 5.0 Consensus size: 57
8173328 AAAGACTGAA
* ** * *
8173338 ATCGGGATTAAAAATGGAATTTTGGTGAGTTCGGGGGTAAAATGGTAATTTTTGGTAAA
1 ATCGGGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTTGG-AAT
* *
8173397 ATCGGGGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGT
1 ATCGGGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGAA-T
* * ** *
8173456 TTCGAGGTCGAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAA-
1 ATCGGGGTTAAAAATGGAATTTTGGAAAGTT-TGGGGTAAAATGGTAATTTTT-G-GAAT
* *
8173515 ATCGAGGTTAAAAATAGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGAAGT
1 ATCGGGGTTAAAAATGGAATTTTGGAAAGTTT-GGGGTAAAATGGTAATTTTTGGAA-T
* * *
8173574 TTCGGGGTTAAAAATGGAATTTTTTGAAA-TCTTGGGGTCAAAAT-GCAATTTTTGGA
1 ATCGGGGTTAAAAATGGAA-TTTTGGAAAGT-TTGGGGT-AAAATGGTAATTTTTGGA
8173630 TTGTTTGGGG
Statistics
Matches: 198, Mismatches: 24, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
57 3 0.02
58 3 0.02
59 173 0.87
60 16 0.08
61 3 0.02
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (57 bp):
ATCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAATTTTTGGAAT
Found at i:8173611 original size:118 final size:118
Alignment explanation
Indices: 8173339--8173628 Score: 390
Period size: 118 Copynumber: 2.5 Consensus size: 118
8173329 AAGACTGAAA
* * ** *
8173339 TCGGGATTAAAAATGGAATTTTGGTGAGTTC-GGGGGTAAAATGGTAATTTTTGGTAAAATCGGG
1 TCGGGGTTAAAAATGGAATTTT-TTGAAATCTGGGGGTAAAATGGTAATTTTTGGTAAAATCGAG
8173403 GTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTT
65 GTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTT
* ** * *
8173457 TCGAGGTCGAAAATGGAA-TTTTGGAAAGT-TCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
1 TCGGGGTTAAAAATGGAATTTTTTGAAA-TCT-GGGGGTAAAATGGTAATTTTTGGTAAAATCGA
* *
8173520 GGTTAAAAATAGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGAAGTT
64 GGTTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTT
* *
8173575 TCGGGGTTAAAAATGGAATTTTTTGAAATCTTGGGGTCAAAAT-GCAATTTTTGG
1 TCGGGGTTAAAAATGGAATTTTTTGAAATCTGGGGGT-AAAATGGTAATTTTTGG
8173629 ATTGTTTGGG
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
116 2 0.01
117 4 0.03
118 128 0.86
119 14 0.09
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (118 bp):
TCGGGGTTAAAAATGGAATTTTTTGAAATCTGGGGGTAAAATGGTAATTTTTGGTAAAATCGAGG
TTAAAAATAGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTT
Found at i:8175646 original size:7 final size:6
Alignment explanation
Indices: 8175620--8175708 Score: 80
Period size: 6 Copynumber: 15.0 Consensus size: 6
8175610 TTAAATTTGT
* **
8175620 TTTATAA TTTAAA TTTAAA TTTAAA ATT-AA GGTAAA TTTAAA TAATTAAA
1 TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA
8175670 TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA --TAAA TTTAAA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
8175709 ATCAATTTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 17
0.76 0.05 0.19
Matches are distributed among these distances:
4 5 0.07
5 6 0.09
6 47 0.68
7 5 0.07
8 6 0.09
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:8175657 original size:17 final size:16
Alignment explanation
Indices: 8175635--8175710 Score: 84
Period size: 17 Copynumber: 4.8 Consensus size: 16
8175625 AATTTAAATT
*
8175635 TAAATTTAAAATTAAGG
1 TAAATTTAAAATTAA-A
*
8175652 TAAATTT-AAA-TAAT
1 TAAATTTAAAATTAAA
*
8175666 TAAATTTAAATTTAAGA
1 TAAATTTAAAATTAA-A
*
8175683 TAAATTTAAATTTAAA
1 TAAATTTAAAATTAAA
8175699 TAAATTTAAAAT
1 TAAATTTAAAAT
8175711 CAATTTAACC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
14 7 0.13
15 5 0.10
16 18 0.35
17 22 0.42
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
TAAATTTAAAATTAAA
Found at i:8175671 original size:37 final size:38
Alignment explanation
Indices: 8175623--8175708 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 38
8175613 AATTTGTTTT
*
8175623 ATAATTTAAATTTAAATTTAAAATTAAGGTAAATTTAA
1 ATAATTTAAATTTAAATTTAAAATAAAGGTAAATTTAA
* **
8175661 ATAA-TTAAATTTAAATTTAAGATAAATTTAAATTTAA
1 ATAATTTAAATTTAAATTTAAAATAAAGGTAAATTTAA
8175698 ATAAATTTAAA
1 AT-AATTTAAA
8175709 ATCAATTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
37 31 0.74
38 6 0.14
39 5 0.12
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (38 bp):
ATAATTTAAATTTAAATTTAAAATAAAGGTAAATTTAA
Found at i:8176063 original size:38 final size:37
Alignment explanation
Indices: 8176021--8176451 Score: 202
Period size: 38 Copynumber: 11.4 Consensus size: 37
8176011 CTATCCAATT
8176021 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTACTC
1 TTACTTCAATTTCAAGAGGAT-GGAAACGATCTTACTC
* * *
8176059 TTACTTCAATTTCAA-A-GAT-AAAGACTTGATATCCAGCT-
1 TTACTTCAATTTCAAGAGGATGGAA-AC--GATCT-TA-CTC
*
8176097 TTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTC
1 TTACTTCAATTTCAAGAGGAT-GGAAACGATCTTACTC
* * *
8176135 TTACTTCAATTTC-AGA-GAT-AAAGACTTGATATCCAGCT-
1 TTACTTCAATTTCAAGAGGATGGAA-AC--GATCT-TA-CTC
* *
8176173 TTACTTCAATTTCAAGAGGATGGGAAATGATCTTGCTC
1 TTACTTCAATTTCAAGAGGAT-GGAAACGATCTTACTC
* * **
8176211 TTATTTCAATTTC-AGA-GAT-AAAGACTTGTTATCCAACTC
1 TTACTTCAATTTCAAGAGGATGGAA-AC--G--ATCTTACTC
* * *
8176250 -TACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTC
1 TTACTTCAATTTCAAGAGGAT-GGAAACGATCTTACTC
* *
8176287 TTACTTCAATTTC-AGA-GAT--AAA-GACGCGTTATCCAC
1 TTACTTCAATTTCAAGAGGATGGAAACGA-TC-TTA--CTC
* * *
8176323 TCTATTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTC
1 T-TACTTCAATTTCAAGAGGAT-GGAAACGATCTTACTC
* *
8176362 TTACTTCAATTTC-AGA-GAT-AAAGACTTGATATTCAACTC
1 TTACTTCAATTTCAAGAGGATGGAA-AC--GATCTT--ACTC
* * *
8176401 -TACTTCAATTTCAAGAGGACAGGAAATGATCTTGCTC
1 TTACTTCAATTTCAAGAGGA-TGGAAACGATCTTACTC
8176438 TTACTTCAATTTCA
1 TTACTTCAATTTCA
8176452 GAGATAAAGA
Statistics
Matches: 295, Mismatches: 47, Indels: 102
0.66 0.11 0.23
Matches are distributed among these distances:
32 2 0.01
33 3 0.01
34 10 0.03
35 6 0.02
36 18 0.06
37 50 0.17
38 131 0.44
39 43 0.15
40 11 0.04
41 7 0.02
42 12 0.04
43 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (37 bp):
TTACTTCAATTTCAAGAGGATGGAAACGATCTTACTC
Found at i:8176124 original size:76 final size:76
Alignment explanation
Indices: 8175996--8176717 Score: 1034
Period size: 76 Copynumber: 9.5 Consensus size: 76
8175986 TGCTTTTCAG
* * * * * * *
8175996 AGAGATAAATACTTGCTATCCAATTTTACTTCAATTTCAAGAGGATGGGAAACGATCTTACTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176061 ACTTCAATTTC
66 ACTTCAATTTC
* * * * *
8176072 AAAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAACGATCTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176137 ACTTCAATTTC
66 ACTTCAATTTC
* * *
8176148 AGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
*
8176213 ATTTCAATTTC
66 ACTTCAATTTC
* *
8176224 AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176289 ACTTCAATTTC
66 ACTTCAATTTC
** * * *
8176300 AGAGATAAAGACGCGTTATCC-ACTCTATTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176364 ACTTCAATTTC
66 ACTTCAATTTC
* *
8176375 AGAGATAAAGACTTGATATTCAACTCTACTTCAATTTCAAGAGGACAGGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176440 ACTTCAATTTC
66 ACTTCAATTTC
* * * * * * *
8176451 AGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGAATAGGAAGTGATGTCGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176516 ACTTCAATTTC
66 ACTTCAATTTC
* * * *
8176527 AGAGATCAAGGCTTGATATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
8176592 ACTTCAATTTC
66 ACTTCAATTTC
* * *
8176603 AGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAATGA-CGTTGCTCT
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATC-TTGCTCT
8176667 TACTTCAATTTC
65 TACTTCAATTTC
* * * *
8176679 AGAGATCAAGGCTTGATATCCAGCTTTACTTCAATTTCA
1 AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCA
8176718 GAGATAAGGA
Statistics
Matches: 584, Mismatches: 60, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
75 69 0.12
76 515 0.88
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (76 bp):
AGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
ACTTCAATTTC
Found at i:8176794 original size:114 final size:113
Alignment explanation
Indices: 8176135--8176831 Score: 493
Period size: 114 Copynumber: 6.1 Consensus size: 113
8176125 GATCTTGCTC
* * *
8176135 TTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGGGAAA
1 TTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAG-GGATAGGAAA
* * * *
8176200 TGATC-TTGCTCTTATTTCAATTTCAGAGATAAAGACTTGTTATCCAACT
65 TGA-CGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAGCT
* * ** * ** *
8176249 CTACTTCAATTTCAAGAGGAT-AGGAAATGATGT--TGCTCTTACTTCAATTTC-AGAGATA--A
1 TTACTTCAATTTC-AGA-GATAAAGACTTGATATCCAACTC-TACTTCAATTTCAAGGGATAGGA
* * * * * ** * **
8176308 AGACG-CGTTATCCACTCTATTTCAATTTCAAGAGGAT-AGGA--AAAGATCTTGCT
63 A-ATGACG-T-TGCTCT-TACTTCAATTTC-AGA-GATAAAGACGTGATATCCAGCT
* *
8176361 CTTACTTCAATTTCAGAGATAAAGACTTGATATTCAACTCTACTTCAATTTCAAGAGGACAGGAA
1 -TTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAG-GGATAGGAA
* *
8176426 ATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACT
64 ATGA-CGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAGCT
* * * ** * * *
8176476 CTACTTCAATTTCAAGCGA-ATAGGAAGTGATGT-C-GCTCTTACTTCAATTTC-AGAGATCAAG
1 TTACTTCAATTTC-AGAGATA-AAGACTTGATATCCAACTC-TACTTCAATTTCAAGGGAT--AG
** ** * * ** **
8176537 G-CTTGATATCCAGCT-TTACTTCAATTTCAAGAGGAT-AGGAAATG--ATCTTGCT
61 GAAATGACGT--TGCTCTTACTTCAATTTC-AGA-GATAAAGACGTGATATCCAGCT
* *
8176589 CTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAA
1 -TTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAG-GGATAGGAA
* * *
8176654 ATGACGTTGCTCTTACTTCAATTTCAGAGATCAAGGCTTGATATCCAGCT
64 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAGCT
* *
8176704 TTACTTCAATTTCAGAGATAAGGACTTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAA
1 TTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAG-GGATAGGAAA
*
8176769 TGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-GACT
65 TGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAG-CT
*
8176818 CTACTTCAATTTCA
1 TTACTTCAATTTCA
8176832 AGAAGATAGG
Statistics
Matches: 452, Mismatches: 86, Indels: 90
0.72 0.14 0.14
Matches are distributed among these distances:
109 1 0.00
110 2 0.00
111 6 0.01
112 31 0.07
113 84 0.19
114 249 0.55
115 64 0.14
116 12 0.03
117 2 0.00
118 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (113 bp):
TTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGGGATAGGAAAT
GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGATATCCAGCT
Found at i:8176854 original size:76 final size:76
Alignment explanation
Indices: 8176704--8176847 Score: 243
Period size: 76 Copynumber: 1.9 Consensus size: 76
8176694 ATATCCAGCT
* * **
8176704 TTACTTCAATTTCAGAGATAAGGACTTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGAAA
1 TTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAAGATAGGAAA
8176769 TGACGTTGCTC
66 TGACGTTGCTC
*
8176780 TTACTTCAATTTCAGAGATAAAGACGTGTTATCCGACTCTACTTCAATTTCAAGAAGATAGGAAA
1 TTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAAGATAGGAAA
8176845 TGA
66 TGA
8176848 TCTTGCTGCG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (76 bp):
TTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAAGATAGGAAA
TGACGTTGCTC
Found at i:8189026 original size:29 final size:28
Alignment explanation
Indices: 8188986--8189356 Score: 198
Period size: 29 Copynumber: 12.6 Consensus size: 28
8188976 ACCTAGGGGC
8188986 AAAATGGTAATTTTTGGTAAAATTGAGGTT
1 AAAATGGTAA-TTTTGG-AAAATTGAGGTT
* * *
8189016 AAAATGG-AATTTTAGAAAATTTAAGGGT
1 AAAATGGTAATTTTGGAAAA-TTGAGGTT
* * *
8189044 AAAATGGTAAATTTGGTGAAATCGAGGTT
1 AAAATGGTAATTTTGG-AAAATTGAGGTT
* * *
8189073 AAAAATGG-AATTTTGGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTGGAAAATTGA-GGTT
* * *
8189102 AAAATGGTAATTTTTGGTGAAATCGAAGTT
1 AAAATGGTAA-TTTTGG-AAAATTGAGGTT
* *
8189132 AAAAATGG-AATTTTGGAAAGTTTGAGGGGT
1 -AAAATGGTAATTTTGGAAA-ATTGA-GGTT
*
8189162 AAAATGGTAATTTTGGTGAAATT-AGGGTT
1 AAAATGGTAATTTTGG-AAAATTGA-GGTT
* * * *
8189191 AAAAATAG-AATTTTGGAAAGTTTGGGGGT
1 -AAAATGGTAATTTTGGAAA-ATTGAGGTT
** *
8189220 AAAATGGTAATTTTTGGAAGTTTCGGGGTT
1 AAAATGGTAA-TTTTGGAAAATT-GAGGTT
* *
8189250 AAAAATGG-AATTTTGGAAAGTTCGAGGGT
1 -AAAATGGTAATTTTGGAAAATT-GAGGTT
* * *
8189279 AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAATGGTAA-TTTTGG-AAAATTGAGGTT
* * * *
8189309 AAAAATAG-AATTTTGGAAAGTTTGGGGGT
1 -AAAATGGTAATTTTGGAAA-ATTGAGGTT
8189338 AAAATGGTAATTTTTGGAA
1 AAAATGGTAA-TTTTGGAA
8189357 GTTTCGGGGT
Statistics
Matches: 262, Mismatches: 52, Indels: 54
0.71 0.14 0.15
Matches are distributed among these distances:
27 4 0.02
28 54 0.21
29 95 0.36
30 80 0.31
31 29 0.11
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (28 bp):
AAAATGGTAATTTTGGAAAATTGAGGTT
Found at i:8189141 original size:59 final size:59
Alignment explanation
Indices: 8188979--8189381 Score: 509
Period size: 59 Copynumber: 6.9 Consensus size: 59
8188969 TTTGGATACC
* * * * *
8188979 TAGGGGCAAAATGGTAATTTTTGGTAAAATTGAGGTT-AAAATGGAATTTTAGAAAATT
1 TAGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
* *
8189037 TAAGGGTAAAATGGTAA-ATTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
1 TAGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
*
8189095 TAGGGGTAAAATGGTAATTTTTGGTGAAATCGAAGTTAAAAATGGAATTTTGGAAAGTT
1 TAGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
* *
8189154 TGAGGGGTAAAATGGTAA-TTTTGGTGAAAT-TAGGGTTAAAAATAGAATTTTGGAAAGTT
1 T-AGGGGTAAAATGGTAATTTTTGGTGAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTT
* * *
8189213 TGGGGGTAAAATGGTAATTTTT-G-GAAGTTTCGGGGTTAAAAATGGAATTTTGGAAAG-T
1 TAGGGGTAAAATGGTAATTTTTGGTGAA--ATCGAGGTTAAAAATGGAATTTTGGAAAGTT
* * *
8189271 TCGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTT
1 TAG-GGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
* * *
8189331 TGGGGGTAAAATGGTAATTTTT-G-GAAGTTTCGGGGTTAAAAATGGAATTTT
1 TAGGGGTAAAATGGTAATTTTTGGTGAA--ATCGAGGTTAAAAATGGAATTTT
8189382 CTGAAATCTT
Statistics
Matches: 307, Mismatches: 24, Indels: 27
0.86 0.07 0.08
Matches are distributed among these distances:
57 22 0.07
58 71 0.23
59 191 0.62
60 20 0.07
61 3 0.01
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (59 bp):
TAGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
Found at i:8189358 original size:29 final size:29
Alignment explanation
Indices: 8188981--8189424 Score: 188
Period size: 29 Copynumber: 15.1 Consensus size: 29
8188971 TGGATACCTA
* **
8188981 GGGGCAAAATGGTAATTTTTGGTAAAATTG
1 GGGGTAAAATGGTAATTTTTGG-AAGTTTG
* * * * * *
8189011 AGGTTAAAATGG-AATTTTAGAAAATTTA
1 GGGGTAAAATGGTAATTTTTGGAAGTTTG
* * * * *
8189039 AGGGTAAAATGGTAAATTTGGTGAA-ATCG
1 GGGGTAAAATGGTAATTTTTG-GAAGTTTG
* * *
8189068 AGGTTAAAAATGG-AA-TTTTGGAAAGTTTA
1 GGGGT-AAAATGGTAATTTTTGG-AAGTTTG
* *
8189097 GGGGTAAAATGGTAATTTTTGGTGAA-ATCG
1 GGGGTAAAATGGTAATTTTT-G-GAAGTTTG
** *
8189127 AAGTTAAAAATGG-AA-TTTTGGAAAGTTTG
1 GGGGT-AAAATGGTAATTTTTGG-AAGTTTG
* * *
8189156 AGGGGTAAAATGGTAATTTTGGTGAA-ATTA
1 -GGGGTAAAATGGTAATTTTTG-GAAGTTTG
* *
8189186 GGGTTAAAAATAG-AA-TTTTGGAAAGTTTG
1 GGGGT-AAAATGGTAATTTTTGG-AAGTTTG
8189215 GGGGTAAAATGGTAATTTTTGGAAGTTTCG
1 GGGGTAAAATGGTAATTTTTGGAAGTTT-G
* *
8189245 GGGTTAAAAATGG-AA-TTTTGGAAAGTTCG
1 GGGGT-AAAATGGTAATTTTTGG-AAGTTTG
* * *
8189274 AGGGTAAAATGGTAATTTTTGGTGAA-ATCG
1 GGGGTAAAATGGTAATTTTT-G-GAAGTTTG
* *
8189304 GGGTTAAAAATAG-AA-TTTTGGAAAGTTTG
1 GGGGT-AAAATGGTAATTTTTGG-AAGTTTG
8189333 GGGGTAAAATGGTAATTTTTGGAAGTTTCG
1 GGGGTAAAATGGTAATTTTTGGAAGTTT-G
* *
8189363 GGGTTAAAAATGG-AATTTTCT-GAAATCTT-
1 GGGGT-AAAATGGTAATTTT-TGGAAGT-TTG
* *
8189392 GGGGTCAAAAT-GTAATTTATGGATTGTTTG
1 GGGGT-AAAATGGTAATTTTTGGA-AGTTTG
8189422 GGG
1 GGG
8189425 ACCTATAAAC
Statistics
Matches: 312, Mismatches: 61, Indels: 82
0.69 0.13 0.18
Matches are distributed among these distances:
27 4 0.01
28 62 0.20
29 107 0.34
30 94 0.30
31 42 0.13
32 3 0.01
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.34
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAGTTTG
Found at i:8189409 original size:118 final size:117
Alignment explanation
Indices: 8188981--8189381 Score: 560
Period size: 118 Copynumber: 3.4 Consensus size: 117
8188971 TGGATACCTA
* ** * * *
8188981 GGGGCAAAATGGTAATTTTTGGTAAAATT-GAGGTT-AAAATGGAATTTTAGAAAATTTAAGGGT
1 GGGGTAAAATGGTAATTTTTGG-AAGTTTCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* * * *
8189044 AAAATGGTAAATTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
65 AAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
* *
8189097 GGGGTAAAATGGTAATTTTTGGTGAA--ATCGAAGTTAAAAATGGAATTTTGGAAAGTTTGAGGG
1 GGGGTAAAATGGTAATTTTT-G-GAAGTTTCGAGGTTAAAAATGGAATTTTGGAAAGTTT-AGGG
**
8189160 GTAAAATGGTAATTTTGGTGAAATTAGGGTTAAAAATAGAATTTTGGAAAGTTTG
63 GTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
* *
8189215 GGGGTAAAATGGTAATTTTTGGAAGTTTCGGGGTTAAAAATGGAATTTTGGAAAG-TTCGAGGGT
1 GGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTTAAAAATGGAATTTTGGAAAGTTTAG-GGGT
8189279 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
65 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
*
8189333 GGGGTAAAATGGTAATTTTTGGAAGTTTCGGGGTTAAAAATGGAATTTT
1 GGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTTAAAAATGGAATTTT
8189382 CTGAAATCTT
Statistics
Matches: 258, Mismatches: 18, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
115 1 0.00
116 28 0.11
117 40 0.16
118 189 0.73
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (117 bp):
GGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTA
AAATGGTAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTG
Found at i:8191422 original size:6 final size:6
Alignment explanation
Indices: 8191406--8191494 Score: 89
Period size: 6 Copynumber: 15.0 Consensus size: 6
8191396 TTAAATTTGT
**
8191406 TTTATAA TTTAAA TTTAAA TTTAAA TTT-AA GGTAAA TTTAAA TAATTAAA
1 TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA
8191456 TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA --TAAA TTTAAA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
8191495 ATCAATTTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 17
0.77 0.04 0.19
Matches are distributed among these distances:
4 5 0.07
5 6 0.09
6 48 0.69
7 5 0.07
8 6 0.09
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (6 bp):
TTTAAA
Found at i:8191443 original size:11 final size:11
Alignment explanation
Indices: 8191427--8191477 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
8191417 AATTTAAATT
*
8191427 TAAATTTAAGG
1 TAAATTTAAGA
8191438 TAAATTTAA-A
1 TAAATTTAAGA
* **
8191448 T-AATTAAATT
1 TAAATTTAAGA
8191458 TAAATTTAAGA
1 TAAATTTAAGA
8191469 TAAATTTAA
1 TAAATTTAA
8191478 ATTTAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
9 6 0.19
10 2 0.06
11 24 0.75
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (11 bp):
TAAATTTAAGA
Found at i:8191479 original size:37 final size:38
Alignment explanation
Indices: 8191418--8191494 Score: 95
Period size: 37 Copynumber: 2.0 Consensus size: 38
8191408 TATAATTTAA
*
8191418 ATTTAAATTTAAATTTAAGGTAAATTTAAATAA-TTAA
1 ATTTAAATTTAAATTAAAGGTAAATTTAAATAATTTAA
**
8191455 ATTTAAATTTAAGA-TAAATTTAAATTTAAATAAATTTAA
1 ATTTAAATTTAA-ATTAAAGGTAAATTTAAAT-AATTTAA
8191494 A
1 A
8191495 ATCAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 26 0.76
38 3 0.09
39 5 0.15
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (38 bp):
ATTTAAATTTAAATTAAAGGTAAATTTAAATAATTTAA
Found at i:8191496 original size:17 final size:16
Alignment explanation
Indices: 8191406--8191494 Score: 101
Period size: 17 Copynumber: 5.4 Consensus size: 16
8191396 TTAAATTTGT
8191406 TTTATAATTTAAATTTAAA
1 TTTA-AATTTAAA--TAAA
*
8191425 TTTAAATTTAAGGTAAA
1 TTTAAATTTAA-ATAAA
*
8191442 TTTAAA--TAATTAAA
1 TTTAAATTTAAATAAA
8191456 TTTAAATTTAAGATAAA
1 TTTAAATTTAA-ATAAA
8191473 TTTAAATTTAAATAAA
1 TTTAAATTTAAATAAA
8191489 TTTAAA
1 TTTAAA
8191495 ATCAATTTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
14 10 0.16
15 3 0.05
16 14 0.22
17 25 0.40
18 7 0.11
19 4 0.06
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:8191980 original size:76 final size:76
Alignment explanation
Indices: 8191890--8192676 Score: 1132
Period size: 76 Copynumber: 10.4 Consensus size: 76
8191880 TATCCAGCTT
* * * *
8191890 TTTCAAGAGGATGGGAAACGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAG
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
*
8191955 CTTTACTTCAA
66 CTCTACTTCAA
* * *
8191966 TTTCAAGAGGATGGGAAATGATCTTGCTCTTATTTTAATTTCAGAGATAAAGACTTGTTATCCAA
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
8192031 CTCTACTTCAA
66 CTCTACTTCAA
* **
8192042 TTTCAAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACGCGTTATCC-A
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
* *
8192106 CTTTATTTCAA
66 CTCTACTTCAA
* * *
8192117 TTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATTCAA
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
8192182 CTCTACTTCAA
66 CTCTACTTCAA
*
8192193 TTTCAAGAGGACAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGA-TGTGTTATCCA
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACT-TGTTATCCA
8192257 ACTCTACTTCAA
65 ACTCTACTTCAA
* * * * ** * * * *
8192269 TTTCAAGCGAATAGGAAGTGATGTCACTCTTACTTCAATTTCAGAGATCAAGGCTTGATATCCAG
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
*
8192334 CTTTACTTCAA
66 CTCTACTTCAA
* *
8192345 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAA
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
8192410 CTCTACTTCAA
66 CTCTACTTCAA
* * * *
8192421 TTTCAAGCGGATAGGAAATGA-CGTTGCTCTTACTTCAATTTCAGAGATCAAGGCTTGATATCCA
1 TTTCAAGAGGATAGGAAATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCA
* *
8192485 GCTTTACTTCAA
65 ACTCTACTTCAA
* * *
8192497 TTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAGGACTTTTTATCCAA
1 TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
8192562 CTCTACTTCAA
66 CTCTACTTCAA
* * *
8192573 TTTCAAGCGGATAGGAAATGA-CGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCG
1 TTTCAAGAGGATAGGAAATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCA
*
8192637 ACTCTACCTCAA
65 ACTCTACTTCAA
8192649 TTTCAAGAGGATAGGAAATGATCTTGCT
1 TTTCAAGAGGATAGGAAATGATCTTGCT
8192677 GCGGTATGAT
Statistics
Matches: 632, Mismatches: 72, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
75 70 0.11
76 559 0.88
77 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (76 bp):
TTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAA
CTCTACTTCAA
Done.