Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 26 of 193
Found at i:8552419 original size:16 final size:16
Alignment explanation
Indices: 8552398--8552439 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
8552388 ATTAAAATGG
8552398 ATTTTTTAG-TTTATTT
1 ATTTTTTAGTTTTA-TT
*
8552414 ATTTTTTTGTTTTATT
1 ATTTTTTAGTTTTATT
8552430 -TTTTTTAGTT
1 ATTTTTTAGTT
8552440 GGGCCCGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
16 10 0.43
17 4 0.17
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (16 bp):
ATTTTTTAGTTTTATT
Found at i:8553052 original size:96 final size:95
Alignment explanation
Indices: 8552757--8553053 Score: 342
Period size: 96 Copynumber: 3.1 Consensus size: 95
8552747 GATTTACTAT
* * *
8552757 TTATTTTGACCCACTTCTCTGTACCTCACTAGGAAGATGGGATTTGAAGTCTCACTCCACTCCAC
1 TTATTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTCTCACTCCACTCCAT
* *
8552822 TGTATCCTCAGGGACGTTGAGCTCGGTTTCG
66 TGTATCCTCAGGGACGTTGACCTC-GCTTCG
* * * * * * * *
8552853 TTATTTTAAACTACTTCTCTGTACCTCACCAGAAAGATGAAATTTAAAGTCTCACTCTACTCTAT
1 TTATTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTCTCACTCCACTCCAT
* * * * * **
8552918 TGTAACCTTAGGGATGTTGAGCTTTGCTTTA
66 TGTATCCTCAGGGACGTTGA-CCTCGCTTCG
* *
8552949 TTATTTTGACCCACTTCTCTATACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCAT
1 TTATTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTCTCACTCCACTCCAT
* *
8553014 TGTATCCTCAAGGACGTTTACCTCGACTTCG
66 TGTATCCTCAGGGACGTTGACCTCG-CTTCG
*
8553045 TTGTTTTGA
1 TTATTTTGA
8553054 TTAAACACAC
Statistics
Matches: 159, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
95 3 0.02
96 155 0.97
97 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (95 bp):
TTATTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTCTCACTCCACTCCAT
TGTATCCTCAGGGACGTTGACCTCGCTTCG
Found at i:8553281 original size:114 final size:114
Alignment explanation
Indices: 8552952--8553259 Score: 537
Period size: 114 Copynumber: 2.7 Consensus size: 114
8552942 TGCTTTATTA
*
8552952 TTTTGACCCACTTCTCTATACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCATTGT
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCATTGT
8553017 ATCCTCAAGGACGTTTACCTCGACTTCGTTGTTTTGATTAAACACACTG
66 ATCCTCAAGGACGTTTACCTCGACTTCGTTGTTTTGATTAAACACACTG
8553066 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCATTGT
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCATTGT
*
8553131 ATCTTCAAGGACGTTTACCTCGACTTCGTTGTTTTGATTAAACACACTG
66 ATCCTCAAGGACGTTTACCTCGACTTCGTTGTTTTGATTAAACACACTG
* * * *
8553180 TTTTGACCCACTTCTCTGTACCTCACCAGAAAGATGGGATTTAAAGTCTT-ACTCCACTCCACTG
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGT-TTCACTCCACTCCATTG
*
8553244 TATCCTCATGGACGTT
65 TATCCTCAAGGACGTT
8553260 GAGCTTTGCT
Statistics
Matches: 185, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
114 183 0.99
115 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (114 bp):
TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCATTGT
ATCCTCAAGGACGTTTACCTCGACTTCGTTGTTTTGATTAAACACACTG
Found at i:8553353 original size:96 final size:96
Alignment explanation
Indices: 8553180--8553462 Score: 433
Period size: 96 Copynumber: 2.9 Consensus size: 96
8553170 AAACACACTG
* * * *
8553180 TTTTGACCCACTTCTCTGTACCTCACCAGAAAGATGGGATTTAAAGTCTT-ACTCCACTCCACTG
1 TTTTGACTCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGT-TTCACTCCACTCCACTG
* * *
8553244 TATCCTCATGGACGTTGAGCTTTGCTTCATTA
65 TAACCTCAGGGACGTTGAGCTCTGCTTCATTA
* *
8553276 TTTTGACTTACTTCTCTATACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCACTGT
1 TTTTGACTCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCACTGT
* *
8553341 AACCTTAGGGACGTTGAGCTCTGTTTCATTA
66 AACCTCAGGGACGTTGAGCTCTGCTTCATTA
* *
8553372 TTTTGACTGACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCATTCCACTGT
1 TTTTGACTCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCACTGT
8553437 AACCTCAGGGACGTTGAGCTCTGCTT
66 AACCTCAGGGACGTTGAGCTCTGCTT
8553463 TGTTGTTTTA
Statistics
Matches: 170, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
95 2 0.01
96 168 0.99
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (96 bp):
TTTTGACTCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACTCCACTGT
AACCTCAGGGACGTTGAGCTCTGCTTCATTA
Found at i:8553628 original size:21 final size:21
Alignment explanation
Indices: 8553604--8553671 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
8553594 GATTCGCCTT
8553604 TACAGCTTCAATCTGCTTCTC
1 TACAGCTTCAATCTGCTTCTC
* * * *
8553625 TACAGTGTTAAGATTTGC--CTT
1 TACAG-CTTCA-ATCTGCTTCTC
8553646 TACAGCTTCAATCTGCTTCTC
1 TACAGCTTCAATCTGCTTCTC
8553667 TACAG
1 TACAG
8553672 TGTTAAGATT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
19 5 0.14
20 3 0.09
21 19 0.54
22 3 0.09
23 5 0.14
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.38
Consensus pattern (21 bp):
TACAGCTTCAATCTGCTTCTC
Found at i:8553629 original size:42 final size:42
Alignment explanation
Indices: 8553593--8553705 Score: 199
Period size: 42 Copynumber: 2.7 Consensus size: 42
8553583 TACAGCTTTG
*
8553593 AGATTCGCCTTTACAGCTTCAATCTGCTTCTCTACAGTGTTA
1 AGATTTGCCTTTACAGCTTCAATCTGCTTCTCTACAGTGTTA
8553635 AGATTTGCCTTTACAGCTTCAATCTGCTTCTCTACAGTGTTA
1 AGATTTGCCTTTACAGCTTCAATCTGCTTCTCTACAGTGTTA
* *
8553677 AGATTTGCCTTTGCGGCTTCAATCTGCTT
1 AGATTTGCCTTTACAGCTTCAATCTGCTT
8553706 ATCCTCATCT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (42 bp):
AGATTTGCCTTTACAGCTTCAATCTGCTTCTCTACAGTGTTA
Found at i:8554067 original size:97 final size:92
Alignment explanation
Indices: 8553906--8554169 Score: 271
Period size: 94 Copynumber: 2.8 Consensus size: 92
8553896 AGATTCACCG
* * * * * * *
8553906 TTGCGACCTCAATCTTTCTCATCACA-TTTCTAAGGTATCAGGTCCGCCGTTGTGGCCTCAACCT
1 TTGCGGCCTCAATCCTTCCCATCACATTTTCTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCT
*
8553970 TTCCCTTTAT-TTCCATGATATTGAATTCGCCA
66 TTCCCTTTATCTT-CATGATA--CAA---GCCA
*
8554002 TTGCGGCCTCAATCCTTCCCATCACATTTTCTAAGGTACCGGGTTCGTCGTTGCGGCCTCAACCT
1 TTGCGGCCTCAATCCTTCCCATCACATTTTCTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCT
* * *
8554067 TTCCCTTCATATCTTCATGGTACCAGCCG
66 TTCCCTT--TATCTTCATGATACAAGCCA
* * * * * * *
8554096 TTGCAGCCTTAATCCTTCCCATCACATTTTTTAAGGTACCGGATTCACCATTGCAGCCTCAACCT
1 TTGCGGCCTCAATCCTTCCCATCACATTTTCTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCT
8554161 TTCCCTTTA
66 TTCCCTTTA
8554170 CATCTTCTAA
Statistics
Matches: 144, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
92 2 0.01
94 67 0.47
96 23 0.16
97 41 0.28
99 9 0.06
100 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (92 bp):
TTGCGGCCTCAATCCTTCCCATCACATTTTCTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCT
TTCCCTTTATCTTCATGATACAAGCCA
Found at i:8554216 original size:50 final size:50
Alignment explanation
Indices: 8554017--8554219 Score: 168
Period size: 50 Copynumber: 4.2 Consensus size: 50
8554007 GCCTCAATCC
* * * ** * *
8554017 TTCCCATCACATTTTCTAAGGTACCGGGTTCGTCGTTGCGGCCTCAACCT
1 TTCCCTTCACATCTTCTAAGGTACCGGATTCACCGTTGCAGCCTTAACCT
* * *
8554067 TTCCCTTCATATCTTC-ATGGTACC--A---GCCGTTGCAGCCTTAATCC-
1 TTCCCTTCACATCTTCTAAGGTACCGGATTCACCGTTGCAGCCTTAA-CCT
* * * * *
8554111 TTCCCATCACATTTTTTAAGGTACCGGATTCACCATTGCAGCCTCAACCT
1 TTCCCTTCACATCTTCTAAGGTACCGGATTCACCGTTGCAGCCTTAACCT
* ** * *
8554161 TTCCCTTTACATCTTCTAAGGTATTGGGTTCACCGTTGCAGTCTTAACCT
1 TTCCCTTCACATCTTCTAAGGTACCGGATTCACCGTTGCAGCCTTAACCT
8554211 TTCCCTTCA
1 TTCCCTTCA
8554220 TATCATCATG
Statistics
Matches: 118, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
44 25 0.21
45 9 0.08
47 1 0.01
49 9 0.08
50 74 0.63
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.35
Consensus pattern (50 bp):
TTCCCTTCACATCTTCTAAGGTACCGGATTCACCGTTGCAGCCTTAACCT
Found at i:8554831 original size:112 final size:115
Alignment explanation
Indices: 8554651--8554867 Score: 296
Period size: 112 Copynumber: 1.9 Consensus size: 115
8554641 TATTGTTAAA
* * * *
8554651 CCACTAACCGTTATTTCCAATGCAAAAAAATACTTGAATCAAGGTTGTAAGGTGGATGAAATTGA
1 CCACTAACCATTATTTCCAATGC-AAAAAATACTTGAATCAAGGTTATAAGATGGATAAAATTGA
*
8554716 ATTTTATTAGAGACAAAGCTCGCATGAATGAAAAGATTAAAAATCATTAGT
65 ATTTTATTAGAGACAAAGCTCGCATGAATGAAAACATTAAAAATCATTAGT
* * *
8554767 CCACTAACCATTATTT-CAATGC-AAAAATGCTTGAA-CATGGTTATGAGATGGATAAAATTGAA
1 CCACTAACCATTATTTCCAATGCAAAAAATACTTGAATCAAGGTTATAAGATGGATAAAATTGAA
* ** *
8554829 TTTTATTGGAGGTAAAGCTCGCATGAATGCAAACATTAA
66 TTTTATTAGAGACAAAGCTCGCATGAATGAAAACATTAA
8554868 TCAAAAGTTG
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 56 0.63
113 12 0.13
115 6 0.07
116 15 0.17
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (115 bp):
CCACTAACCATTATTTCCAATGCAAAAAATACTTGAATCAAGGTTATAAGATGGATAAAATTGAA
TTTTATTAGAGACAAAGCTCGCATGAATGAAAACATTAAAAATCATTAGT
Found at i:8555193 original size:24 final size:23
Alignment explanation
Indices: 8555166--8555229 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 23
8555156 TTGACCTCTA
8555166 CTTTTCTTTTTCCTTCTT-TTTTTT
1 CTTTTCTTTTT-CTT-TTCTTTTTT
8555190 CTTTTCCTTTTTCTTTTCTTTTTT
1 CTTTT-CTTTTTCTTTTCTTTTTT
8555214 C-TTTCTTTTTTCTTTT
1 CTTTTC-TTTTTCTTTT
8555230 TCTATTCCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
22 1 0.03
23 15 0.41
24 15 0.41
25 6 0.16
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
CTTTTCTTTTTCTTTTCTTTTTT
Found at i:8555200 original size:12 final size:12
Alignment explanation
Indices: 8555166--8555229 Score: 87
Period size: 12 Copynumber: 5.4 Consensus size: 12
8555156 TTGACCTCTA
*
8555166 CTTTTCTTTTTC
1 CTTTTCTTTTTT
8555178 CTTCTT-TTTTTT
1 CTT-TTCTTTTTT
*
8555190 CTTTTCCTTTTT
1 CTTTTCTTTTTT
8555202 CTTTTCTTTTTT
1 CTTTTCTTTTTT
8555214 C-TTTCTTTTTT
1 CTTTTCTTTTTT
8555225 CTTTT
1 CTTTT
8555230 TCTATTCCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
11 13 0.28
12 31 0.67
13 2 0.04
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
CTTTTCTTTTTT
Found at i:8555213 original size:7 final size:7
Alignment explanation
Indices: 8555179--8555230 Score: 52
Period size: 7 Copynumber: 7.1 Consensus size: 7
8555169 TTCTTTTTCC
8555179 TTCTTTT
1 TTCTTTT
8555186 TT-TTCTT
1 TTCTT-TT
*
8555193 TTCCTTT
1 TTCTTTT
8555200 TTCTTTT
1 TTCTTTT
*
8555207 CTTTTTTCT
1 -TTCTTT-T
8555216 TTCTTTT
1 TTCTTTT
8555223 TTCTTTT
1 TTCTTTT
8555230 T
1 T
8555231 CTATTCCCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 2 0.05
7 23 0.62
8 11 0.30
9 1 0.03
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTCTTTT
Found at i:8555230 original size:18 final size:18
Alignment explanation
Indices: 8555167--8555230 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
8555157 TGACCTCTAC
*
8555167 TTTTC-TTTTTCCTTCTT
1 TTTTCTTTTTTCTTTCTT
8555184 TTTT-TTCTTTTCCTTT-TT
1 TTTTCTT-TTTT-CTTTCTT
8555202 CTTTTCTTTTTTCTTTCTT
1 -TTTTCTTTTTTCTTTCTT
8555221 TTTTCTTTTT
1 TTTTCTTTTT
8555231 CTATTCCCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
17 5 0.12
18 20 0.50
19 13 0.32
20 2 0.05
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTCTTTTTTCTTTCTT
Found at i:8555242 original size:36 final size:34
Alignment explanation
Indices: 8555166--8555259 Score: 89
Period size: 36 Copynumber: 2.6 Consensus size: 34
8555156 TTGACCTCTA
* **
8555166 CTTTTCTTTTTCCTTCTTTTTTTTCTTTTCCTTTTT
1 CTTTTCTTTTTTC-T-TTTTTTTTCTTTTCCTTTCC
*
8555202 CTTTTCTTTTTTCTTTCTTTTTTCTTTTTCTATTCC
1 CTTTTCTTTTTTCTTT-TTTTTTCTTTTCCT-TTCC
* *
8555238 CTTTTTTTATTTTCATTTTTTT
1 CTTTTCTT-TTTTCTTTTTTTT
8555260 GGGGTGAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 2 0.04
35 14 0.29
36 26 0.53
37 7 0.14
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (34 bp):
CTTTTCTTTTTTCTTTTTTTTTCTTTTCCTTTCC
Found at i:8558124 original size:82 final size:82
Alignment explanation
Indices: 8557989--8558348 Score: 333
Period size: 82 Copynumber: 4.4 Consensus size: 82
8557979 AAAGGTCAAG
* ** * * * * * *
8557989 CATTAGCGGCGCTTTTCTTA-ATGCGCCGCAAAAGGTAAAG-CATTAGCGACGCTTAACAC-AAG
1 CATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCATGTCATTAGCGGCGCTT-TCACTAAG
*
8558051 CGCCGCTAAAGGTCGGGT
65 CGCCACTAAAGGTCGGGT
* * *
8558069 CATTAGCGGCACTTTACCCACAAGCGCCGCTAAAAGTCATGTCATTAGCGGCGCTTTCTCTAATG
1 CATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCATGTCATTAGCGGCGCTTTCACTAA-G
* **
8558134 CACTGCTAAAGGTCGGGT
65 CGCCACTAAAGGTCGGGT
* * *
8558152 AATTAGCGGCGCTTTA-CCTCAAGCGCCGCTAAAGGT-ATGATCATTAGCGGCGCTTTCCCTAAA
1 CATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCATG-TCATTAGCGGCGCTTTCACT-AA
*
8558215 GCGCCACTAAAAGGTCGAGT
64 GCGCCACT-AAAGGTCGGGT
*** * *
8558235 CATTAGCGGCGCTTATATATA-AAGCGCCGCTAAAGGTCAGGTCATTAGCGGCGCTTTTCTAATA
1 CATTAGCGGCGCTT-TACCCACAAGCGCCGCTAAAGGTCATGTCATTAGCGGCGC-TTTC-ACTA
* *
8558299 AGCGTCACTAAAGGT-GTG-
63 AGCGCCACTAAAGGTCGGGT
*
8558317 CATTAGCGGCGCTTT-CCCATAAGCGCCGCTAA
1 CATTAGCGGCGCTTTACCCACAAGCGCCGCTAA
8558349 TTTATTTAAA
Statistics
Matches: 232, Mismatches: 35, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
80 17 0.07
81 33 0.14
82 71 0.31
83 58 0.25
84 37 0.16
85 15 0.06
86 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (82 bp):
CATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCATGTCATTAGCGGCGCTTTCACTAAGC
GCCACTAAAGGTCGGGT
Found at i:8558157 original size:41 final size:41
Alignment explanation
Indices: 8557968--8558348 Score: 289
Period size: 42 Copynumber: 9.3 Consensus size: 41
8557958 GTTTGGAAAC
* **
8557968 AAAGCGCCGCAAAAGGTCAAG-CATTAGCGGCGCTTT-TCTT
1 AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTC-T
* * *** * **
8558008 AATGCGCCGCAAAAGGTAAAG-CATTAGCGACGC-TTAAC-
1 AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
* *
8558046 ACAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCACTTTAC-CC
1 A-AAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTT-CTCT
* **
8558088 ACAAGCGCCGCTAAAAGTCATGTCATTAGCGGCGCTTTCTCT
1 A-AAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
* * * *
8558130 AATGCACTGCTAAAGGTCGGGTAATTAGCGGCGCTTTAC-CT
1 AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTT-CTCT
* ** * *
8558171 CAAGCGCCGCTAAAGGTATGATCATTAGCGGCGCTTTCCCT
1 AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
* * * *
8558212 AAAGCGCCACTAAAAGGTCGAGTCATTAGCGGCGCTTATATAT
1 AAAGCGCCGCT-AAAGGTCGGGTCATTAGCGGCGCTT-TCTCT
*
8558255 AAAGCGCCGCTAAAGGTCAGGTCATTAGCGGCGCTTT-TCT
1 AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
* * * *
8558295 AATAAGCGTCACTAAAGGT-GTG-CATTAGCGGCGCTTTC-CC
1 -A-AAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
8558335 ATAAGCGCCGCTAA
1 A-AAGCGCCGCTAA
8558349 TTTATTTAAA
Statistics
Matches: 275, Mismatches: 52, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.00
39 29 0.11
40 60 0.22
41 78 0.28
42 95 0.35
43 12 0.04
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.23
Consensus pattern (41 bp):
AAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTTCTCT
Found at i:8558237 original size:124 final size:121
Alignment explanation
Indices: 8557969--8558348 Score: 391
Period size: 124 Copynumber: 3.1 Consensus size: 121
8557959 TTTGGAAACA
* * *
8557969 AAGCGCCGC-AAAAGGTCAAG-CATTAGCGGCGCTTTTCTTAATGCGCCGCAAAAGGTAAAG-CA
1 AAGCGCCGCTAAAAGGTC-AGTCATTAGCGGCGCTTTTC-TAATGCGCCGCTAAAGGTCAGGTCA
* * ** *
8558031 TTAGCGACGC-TTAACACAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCACTTTACCCAC
64 TTAGCGGCGCTTTAACTCAAGCGCCGCTAAAGGT-ATGTCATTAGCGGCGCTTT-CCCAC
* * * *
8558090 AAGCGCCGCTAAAA-GTCATGTCATTAGCGGCGCTTTCTCTAATGCACTGCTAAAGGTCGGGTAA
1 AAGCGCCGCTAAAAGGTCA-GTCATTAGCGGCGCTTT-TCTAATGCGCCGCTAAAGGTCAGGTCA
*
8558154 TTAGCGGCGCTTTACCTCAAGCGCCGCTAAAGGTATGATCATTAGCGGCGCTTTCCCTA-
64 TTAGCGGCGCTTTAACTCAAGCGCCGCTAAAGGTATG-TCATTAGCGGCGCTTTCCC-AC
* * *
8558213 AAGCGCCACTAAAAGGTCGAGTCATTAGCGGCGCTTATATATAAAGCGCCGCTAAAGGTCAGGTC
1 AAGCGCCGCTAAAAGGTC-AGTCATTAGCGGCGCTT-T-TCTAATGCGCCGCTAAAGGTCAGGTC
* * * *
8558278 ATTAGCGGCGCTTTTCTAA-T-AAGCGTCACTAAAGGTGTG-CATTAGCGGCGCTTTCCCAT
63 ATTAGCGGCGC--TT-TAACTCAAGCGCCGCTAAAGGTATGTCATTAGCGGCGCTTTCCCAC
8558337 AAGCGCCGCTAA
1 AAGCGCCGCTAA
8558349 TTTATTTAAA
Statistics
Matches: 218, Mismatches: 26, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
120 1 0.00
121 13 0.06
122 35 0.16
123 30 0.14
124 85 0.39
125 33 0.15
126 16 0.07
127 3 0.01
128 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.23
Consensus pattern (121 bp):
AAGCGCCGCTAAAAGGTCAGTCATTAGCGGCGCTTTTCTAATGCGCCGCTAAAGGTCAGGTCATT
AGCGGCGCTTTAACTCAAGCGCCGCTAAAGGTATGTCATTAGCGGCGCTTTCCCAC
Found at i:8560340 original size:43 final size:43
Alignment explanation
Indices: 8560279--8560376 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
8560269 ATCTATTATA
* *
8560279 TTAGCGGCGCTTTTGGAGAAAGCGCCGCTAATGAACATGGCCT
1 TTAGCGGCGCTTGTGGAGAAAGCGCCGCTAAAGAACATGGCCT
*
8560322 TTAGCGGCGCTTGTGGAGAAAGCGTCGCTAAAGAACATGGCCT
1 TTAGCGGCGCTTGTGGAGAAAGCGCCGCTAAAGAACATGGCCT
8560365 TTAGCGGCGCTT
1 TTAGCGGCGCTT
8560377 TTTCTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.23
Consensus pattern (43 bp):
TTAGCGGCGCTTGTGGAGAAAGCGCCGCTAAAGAACATGGCCT
Found at i:8561824 original size:29 final size:29
Alignment explanation
Indices: 8561689--8561824 Score: 109
Period size: 29 Copynumber: 4.7 Consensus size: 29
8561679 ACAAAAAAAG
*
8561689 GGGTCAAAAACTAAA-TTTT-GAAGAGTTCGA
1 GGGTCAAAATC-AAATTTTTGGAA-AGTTC-A
* * *
8561719 GGGTCAGAACCAAATTTTT-GAAAGTTCG
1 GGGTCAAAATCAAATTTTTGGAAAGTTCA
* *
8561747 GGGTAAAAAATCAAA-TTTTGGAAAGTTTA
1 GGGT-CAAAATCAAATTTTTGGAAAGTTCA
** **
8561776 GGGGTCAAAATGTAATTTTTGGAAAACTCA
1 -GGGTCAAAATCAAATTTTTGGAAAGTTCA
8561806 GGGTCAAAATCAAATTTTT
1 GGGTCAAAATCAAATTTTT
8561825 AAACAAAACA
Statistics
Matches: 85, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
28 8 0.09
29 46 0.54
30 31 0.36
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (29 bp):
GGGTCAAAATCAAATTTTTGGAAAGTTCA
Found at i:8568921 original size:19 final size:20
Alignment explanation
Indices: 8568884--8568922 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8568874 TCACATCAAT
**
8568884 AAATAATTTAAAATTTATAA
1 AAATAATTTAAAAAATATAA
8568904 AAAT-ATTTAAAAAATATAA
1 AAATAATTTAAAAAATATAA
8568923 TCAAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAATTTAAAAAATATAA
Found at i:8569895 original size:3 final size:3
Alignment explanation
Indices: 8569887--8569915 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8569877 TAAGCTATTT
8569887 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
8569916 CAATGGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8576649 original size:20 final size:19
Alignment explanation
Indices: 8576612--8576648 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
8576602 ATAGAAAGGG
8576612 AAAAAATTACAAAAATATA
1 AAAAAATTACAAAAATATA
8576631 AAAAGAATT--AAAAATATA
1 AAAA-AATTACAAAAATATA
8576649 TTCTAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (19 bp):
AAAAAATTACAAAAATATA
Found at i:8577893 original size:21 final size:22
Alignment explanation
Indices: 8577869--8577918 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
8577859 TTTATAATCC
* * *
8577869 ATTAAATAATATATTTTTA-TA
1 ATTAAATAAAACATATTTACTA
*
8577890 ATTAAAAAAAACATATTTACTA
1 ATTAAATAAAACATATTTACTA
8577912 ATTAAAT
1 ATTAAAT
8577919 TAGAGTTGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTAAATAAAACATATTTACTA
Found at i:8581214 original size:23 final size:25
Alignment explanation
Indices: 8581162--8581214 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
8581152 TGAATTTTTT
* *
8581162 TTCGAA-TTTCGAGTTTGAATCAAG
1 TTCGAATTTTCGAATTCGAATCAAG
8581186 TT-GAATTTTCGAATTCGAAT-AA-
1 TTCGAATTTTCGAATTCGAATCAAG
8581208 TTCGAAT
1 TTCGAAT
8581215 AAACCAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 2 0.08
23 9 0.36
24 14 0.56
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (25 bp):
TTCGAATTTTCGAATTCGAATCAAG
Found at i:8584423 original size:80 final size:79
Alignment explanation
Indices: 8584218--8584443 Score: 267
Period size: 80 Copynumber: 2.8 Consensus size: 79
8584208 CACATCAGAT
* * *
8584218 CTACTGAACTGGCAGTAACACTGTAAACACTACATTATCATTACTGAACCAGCAGTGACACTGTA
1 CTACTGAACTGGCAGTGACACTGTAAACACTGCATTAT-ATTACTGAACTAGCAGTGACACTGTA
8584283 AACACTGCGACATTA
65 AACACTGCGACATTA
* * * *
8584298 CTACTGAACTGGTAGTGACACTGTAAACACTATGACA-T-TACTACTGAACTGGCAGTGACATTG
1 CTACTGAACTGGCAGTGACACTGTAAACAC--TG-CATTATATTACTGAACTAGCAGTGACACTG
*
8584361 TAAAGACTGCGACATTA
63 TAAACACTGCGACATTA
* * * * * *
8584378 TTACTGAACTGACGGTGACACTGTAAACACTGCATTATAGTTACTGAACTAACCGTGACAATGTA
1 CTACTGAACTGGCAGTGACACTGTAAACACTGCATTATA-TTACTGAACTAGCAGTGACACTGTA
8584443 A
65 A
8584444 CCACAATTAA
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
77 2 0.02
78 3 0.02
79 2 0.02
80 111 0.90
81 1 0.01
82 2 0.02
83 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (79 bp):
CTACTGAACTGGCAGTGACACTGTAAACACTGCATTATATTACTGAACTAGCAGTGACACTGTAA
ACACTGCGACATTA
Found at i:8584437 original size:40 final size:38
Alignment explanation
Indices: 8584219--8584427 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 38
8584209 ACATCAGATC
* *
8584219 TACTGAACTGGCAGTAACACTGTAAACACTACATTATCAT
1 TACTGAACTGGCAGTGACACTGTAAACACTGCA-TAT-AT
** * *
8584259 TACTGAACCAGCAGTGACACTGTAAACACTGCGACATTAC
1 TACTGAACTGGCAGTGACACTGTAAACACTGC-ATA-TAT
* *
8584299 TACTGAACTGGTAGTGACACTGTAAACACTATGACAT-TAC
1 TACTGAACTGGCAGTGACACTGTAAACAC--TG-CATATAT
* * *
8584339 TACTGAACTGGCAGTGACATTGTAAAGACTGCGACATTAT
1 TACTGAACTGGCAGTGACACTGTAAACACTGC-ATA-TAT
* *
8584379 TACTGAACTGACGGTGACACTGTAAACACTGCATTATAGT
1 TACTGAACTGGCAGTGACACTGTAAACACTGCA-TATA-T
8584419 TACTGAACT
1 TACTGAACT
8584428 AACCGTGACA
Statistics
Matches: 139, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 3 0.02
39 3 0.02
40 126 0.91
41 2 0.01
42 3 0.02
43 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (38 bp):
TACTGAACTGGCAGTGACACTGTAAACACTGCATATAT
Found at i:8587337 original size:37 final size:39
Alignment explanation
Indices: 8587296--8587373 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 39
8587286 TATTTTAATG
*
8587296 ATTTTAATG-ATTTTT-AATTTTTAAAAATA-AATTATAT
1 ATTTT-ATGTATTTTTAAATTTTTAAAAAAATAATTATAT
*
8587333 ATTTTTTGTATTTTTAAAATTTTTAAAAAAATAATTATAT
1 ATTTTATGTATTTTT-AAATTTTTAAAAAAATAATTATAT
8587373 A
1 A
8587374 AACATGTTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 2 0.06
37 11 0.31
39 13 0.37
40 9 0.26
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (39 bp):
ATTTTATGTATTTTTAAATTTTTAAAAAAATAATTATAT
Found at i:8590083 original size:16 final size:16
Alignment explanation
Indices: 8590062--8590097 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
8590052 TATTCAGTTC
8590062 TTATTTTTTT-TATATT
1 TTATTTTTTTCTA-ATT
8590078 TTATTTTTTTCTAATT
1 TTATTTTTTTCTAATT
8590094 TTAT
1 TTAT
8590098 CACCTTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.89
17 2 0.11
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (16 bp):
TTATTTTTTTCTAATT
Found at i:8590118 original size:23 final size:23
Alignment explanation
Indices: 8590092--8590140 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
8590082 TTTTTTCTAA
*
8590092 TTTT-ATCACCTTTGTGACACGTT
1 TTTTCATCACC-TTGTGACACGCT
* *
8590115 TTTTCTTTACCTTGTGACACGCT
1 TTTTCATCACCTTGTGACACGCT
8590138 TTT
1 TTT
8590141 CCTCTGCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.14, C:0.22, G:0.12, T:0.51
Consensus pattern (23 bp):
TTTTCATCACCTTGTGACACGCT
Found at i:8590150 original size:23 final size:23
Alignment explanation
Indices: 8590103--8590153 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
8590093 TTTATCACCT
* * *
8590103 TTGTGACACGTTTTTTCTTTACC
1 TTGTGACACGCTTTTCCTCTACC
*
8590126 TTGTGACACGCTTTTCCTCTGCC
1 TTGTGACACGCTTTTCCTCTACC
8590149 TTGTG
1 TTGTG
8590154 GTATGCTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.10, C:0.25, G:0.18, T:0.47
Consensus pattern (23 bp):
TTGTGACACGCTTTTCCTCTACC
Found at i:8593602 original size:31 final size:29
Alignment explanation
Indices: 8593513--8593609 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 29
8593503 AATTTTGGTA
* *
8593513 TTAGTTTTTGTATTTTTTGAAATTTGTGAAT
1 TTAG-TTTTGTATTTTTTG-AATTAGTCAAT
* *
8593544 TTAGTTCT-TATATTTT-AATATAGTCAAT
1 TTAGTTTTGTATTTTTTGAAT-TAGTCAAT
8593572 TATAGTCTTTGTATTTTTTGAATTAGTCAATT
1 T-TAGT-TTTGTATTTTTTGAATTAGTCAA-T
8593604 TTAGTT
1 TTAGTT
8593610 CGTGGATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
27 3 0.06
28 7 0.13
29 11 0.20
30 6 0.11
31 22 0.41
32 5 0.09
ACGTcount: A:0.26, C:0.04, G:0.12, T:0.58
Consensus pattern (29 bp):
TTAGTTTTGTATTTTTTGAATTAGTCAAT
Found at i:8594688 original size:14 final size:15
Alignment explanation
Indices: 8594662--8594694 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8594652 TTTTATATGA
8594662 AATTTTGAATTAAAG
1 AATTTTGAATTAAAG
*
8594677 AATTTT-AATTAATG
1 AATTTTGAATTAAAG
8594691 AATT
1 AATT
8594695 AAAATATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (15 bp):
AATTTTGAATTAAAG
Found at i:8596609 original size:36 final size:36
Alignment explanation
Indices: 8596561--8596660 Score: 155
Period size: 36 Copynumber: 2.8 Consensus size: 36
8596551 TGGTAACAGG
*
8596561 CATGACCTTTGGGTCAACAAGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
* *
8596597 TATGACCCTTGGGTCAACAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
* *
8596633 CATGACCTTTGGATCAATAGGGAGTAAA
1 CATGACCTTTGGGTCAACAGGGAGTAAA
8596661 TCGAATATCG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (36 bp):
CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
Found at i:8601276 original size:18 final size:18
Alignment explanation
Indices: 8601253--8601287 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8601243 AATAAAATTA
* *
8601253 TTTAATATTAGATTTTAT
1 TTTAATAATAAATTTTAT
8601271 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
8601288 ACATTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:8601313 original size:19 final size:20
Alignment explanation
Indices: 8601269--8601319 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
8601259 ATTAGATTTT
*
8601269 ATTTTAATAATAAATTTTAAC
1 ATTTTAAAAAT-AATTTTAAC
8601290 A--TTAAAAATAATTTTAA-
1 ATTTTAAAAATAATTTTAAC
8601307 ATTTTAAATAATA
1 ATTTTAAA-AATA
8601320 TGATTACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 1 0.04
18 8 0.31
19 12 0.46
20 4 0.15
21 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTTAAAAATAATTTTAAC
Found at i:8609935 original size:43 final size:45
Alignment explanation
Indices: 8609887--8609972 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 45
8609877 AGCTAATGAA
8609887 AATTG-AGTGTGTT-AAA-TACAAAATGGAACCATCACAAGTTCCC
1 AATTGAAG-GTGTTAAAAGTACAAAATGGAACCATCACAAGTTCCC
* *
8609930 AATTGAAGGTTTTAAAATGTCCAAAATGGAACCATCACAAGTT
1 AATTGAAGGTGTTAAAA-GTACAAAATGGAACCATCACAAGTT
8609973 TAATCCAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
43 9 0.24
44 5 0.14
46 23 0.62
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (45 bp):
AATTGAAGGTGTTAAAAGTACAAAATGGAACCATCACAAGTTCCC
Found at i:8613212 original size:12 final size:12
Alignment explanation
Indices: 8613191--8613227 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
8613181 GAAACAACTT
8613191 CCTCCCTATCTC
1 CCTCCCTATCTC
* *
8613203 CCTCCTTATCTT
1 CCTCCCTATCTC
8613215 CCTCCCTATCTC
1 CCTCCCTATCTC
8613227 C
1 C
8613228 TTCTGAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.08, C:0.54, G:0.00, T:0.38
Consensus pattern (12 bp):
CCTCCCTATCTC
Found at i:8613268 original size:27 final size:27
Alignment explanation
Indices: 8613169--8613253 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
8613159 GTCACTATCA
* * *
8613169 CTATCTCCCTCTGAAACAACTTCCTCC
1 CTATCTCCTTCTGAAATAGCTTCCTCC
* *
8613196 CTATCTCCCTCCT----TATCTTCCTCC
1 CTATCT-CCTTCTGAAATAGCTTCCTCC
8613220 CTATCTCCTTCTGAAATAGCTTCCTCC
1 CTATCTCCTTCTGAAATAGCTTCCTCC
8613247 CTATCTC
1 CTATCTC
8613254 TCTCTCGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
23 5 0.11
24 15 0.32
27 23 0.49
28 4 0.09
ACGTcount: A:0.16, C:0.44, G:0.04, T:0.36
Consensus pattern (27 bp):
CTATCTCCTTCTGAAATAGCTTCCTCC
Found at i:8614101 original size:8 final size:8
Alignment explanation
Indices: 8614081--8614122 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
8614071 TGACACAATA
8614081 TACATT-T
1 TACATTGT
8614088 TAACATTGT
1 T-ACATTGT
8614097 TACATTGT
1 TACATTGT
8614105 TACATTGT
1 TACATTGT
*
8614113 TAAATTGT
1 TACATTGT
8614121 TA
1 TA
8614123 AATTCTCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
7 1 0.03
8 29 0.91
9 2 0.06
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (8 bp):
TACATTGT
Found at i:8620706 original size:20 final size:21
Alignment explanation
Indices: 8620681--8620762 Score: 63
Period size: 20 Copynumber: 4.2 Consensus size: 21
8620671 ATATTGAAAT
8620681 AATAATTTTATAAT-TTTTAA
1 AATAATTTTATAATATTTTAA
*
8620701 AATAATATTA-ATATATTTTAA
1 AATAATTTTATA-ATATTTTAA
* *
8620722 AACAATTTTTATAATGTTTT--
1 AATAA-TTTTATAATATTTTAA
8620742 --TAATTTT-TAA-ATTTTAA
1 AATAATTTTATAATATTTTAA
8620759 AATA
1 AATA
8620763 TTAACTAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 17
0.68 0.08 0.24
Matches are distributed among these distances:
15 4 0.08
16 3 0.06
17 4 0.08
18 2 0.04
19 3 0.06
20 11 0.23
21 10 0.21
22 10 0.21
23 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (21 bp):
AATAATTTTATAATATTTTAA
Found at i:8626125 original size:20 final size:20
Alignment explanation
Indices: 8626100--8626139 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8626090 CGGCGCTTAC
8626100 CCCACAAACGCCGCTAAAGA
1 CCCACAAACGCCGCTAAAGA
8626120 CCCACAAACGCCGCTAAAGA
1 CCCACAAACGCCGCTAAAGA
8626140 ACATGATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.15, T:0.05
Consensus pattern (20 bp):
CCCACAAACGCCGCTAAAGA
Found at i:8629210 original size:29 final size:30
Alignment explanation
Indices: 8629175--8629257 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 30
8629165 TTTGGATGCC
*
8629175 CGAGGGTGAAATGGTAATTTTTGGTGAAA-T
1 CGAGGGTAAAATGGTAATTTTTGG-GAAAGT
*
8629205 CG-GGGTTAAAATGG-GA-TTTT-GGAAAGTT
1 CGAGGG-TAAAATGGTAATTTTTGGGAAAG-T
8629233 CGAGGGTAAAATGGTAATTTTTGGG
1 CGAGGGTAAAATGGTAATTTTTGGG
8629258 TTGAAAATGG
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 15 0.35
29 8 0.19
30 13 0.30
31 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.35, T:0.33
Consensus pattern (30 bp):
CGAGGGTAAAATGGTAATTTTTGGGAAAGT
Found at i:8629254 original size:58 final size:58
Alignment explanation
Indices: 8629175--8629398 Score: 331
Period size: 58 Copynumber: 4.0 Consensus size: 58
8629165 TTTGGATGCC
*
8629175 CGAGGGTGAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGGATTTTGGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGGATTTTGGAAAGTT
*
8629233 CGAGGGTAAAATGGTAATTTTTGG-G---T-----TGAAAATGGGATTTTGGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGGATTTTGGAAAGTT
* *
8629282 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTGAAATGGGATTTTGGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGGATTTTGGAAAGTT
*
8629340 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATTGGATTTTGGAAAGTT
1 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGGATTTTGGAAAGTT
8629399 TGGAGACTAG
Statistics
Matches: 148, Mismatches: 8, Indels: 19
0.85 0.05 0.11
Matches are distributed among these distances:
49 45 0.30
50 1 0.01
53 1 0.01
54 1 0.01
57 1 0.01
58 80 0.54
59 19 0.13
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (58 bp):
CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGGATTTTGGAAAGTT
Found at i:8629265 original size:49 final size:49
Alignment explanation
Indices: 8629207--8629363 Score: 201
Period size: 49 Copynumber: 3.0 Consensus size: 49
8629197 GGTGAAATCG
8629207 GGGTT-AAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT
1 GGGTTGAAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT
*
8629255 GGGTTGAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAAT
1 GGGTTGAAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAA--TTT--T----T
8629312 CGGGGTTG-AAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT
1 --GGGTTGAAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT
8629362 GG
1 GG
8629364 TGAAATCGGG
Statistics
Matches: 96, Mismatches: 2, Indels: 22
0.80 0.02 0.18
Matches are distributed among these distances:
48 7 0.07
49 37 0.39
50 1 0.01
51 3 0.03
53 1 0.01
54 1 0.01
56 3 0.03
57 1 0.01
58 36 0.38
59 6 0.06
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.34
Consensus pattern (49 bp):
GGGTTGAAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT
Found at i:8629315 original size:30 final size:30
Alignment explanation
Indices: 8629281--8629380 Score: 109
Period size: 30 Copynumber: 3.4 Consensus size: 30
8629271 TTTGGAAAGT
8629281 TCGGGGGTAAAATGGTAATTTTTGGTGAAA
1 TCGGGGGTAAAATGGTAATTTTTGGTGAAA
* * *
8629311 TCGGGGTTGAAATGG-GA-TTTT-G-GAAA
1 TCGGGGGTAAAATGGTAATTTTTGGTGAAA
*
8629337 GTTCGAGGGTAAAATGGTAATTTTTGGTGAAA
1 --TCGGGGGTAAAATGGTAATTTTTGGTGAAA
*
8629369 TCGGGGTTAAAA
1 TCGGGGGTAAAA
8629381 ATTGGATTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
26 4 0.07
27 1 0.02
28 16 0.29
29 2 0.04
30 27 0.49
31 1 0.02
32 4 0.07
ACGTcount: A:0.30, C:0.04, G:0.34, T:0.32
Consensus pattern (30 bp):
TCGGGGGTAAAATGGTAATTTTTGGTGAAA
Found at i:8629391 original size:29 final size:28
Alignment explanation
Indices: 8629300--8629392 Score: 77
Period size: 29 Copynumber: 3.2 Consensus size: 28
8629290 AAATGGTAAT
* *
8629300 TTTTGGTGAAATCGGGGTTGAAATGGGA
1 TTTTGGTGAAATCGGGGTTAAAATTGGA
8629328 TTTT-G-GAAAGTTCGAGGG-TAAAA-TGGTAA
1 TTTTGGTGAAA--TCG-GGGTTAAAATTGG--A
8629357 TTTTTGGTGAAATCGGGGTTAAAAATTGGA
1 -TTTTGGTGAAATCGGGGTT-AAAATTGGA
8629387 TTTTGG
1 TTTTGG
8629393 AAAGTTTGGA
Statistics
Matches: 52, Mismatches: 2, Indels: 21
0.69 0.03 0.28
Matches are distributed among these distances:
26 4 0.08
27 3 0.06
28 11 0.21
29 13 0.25
30 9 0.17
31 5 0.10
32 7 0.13
ACGTcount: A:0.28, C:0.03, G:0.33, T:0.35
Consensus pattern (28 bp):
TTTTGGTGAAATCGGGGTTAAAATTGGA
Found at i:8632631 original size:17 final size:17
Alignment explanation
Indices: 8632609--8632647 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8632599 CTCCACCTTG
* *
8632609 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCAACGA
8632626 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
8632643 ACAAG
1 ACAAG
8632648 TTCTCCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Found at i:8638007 original size:29 final size:28
Alignment explanation
Indices: 8637967--8638141 Score: 144
Period size: 30 Copynumber: 6.0 Consensus size: 28
8637957 AAAAATGGGT
8637967 TAAAATGGAATTTTGGAAAGTTCGGGGG
1 TAAAATGGAATTTTGGAAAGTTCGGGGG
*
8637995 TAAAATGGTAATTTTTGGTGAAA--TCGGGGT
1 TAAAATGG-AA-TTTT-G-GAAAGTTCGGGGG
*
8638025 TAAAAATGGAATTTTGGAAAGTTCAGGGG
1 T-AAAATGGAATTTTGGAAAGTTCGGGGG
* *
8638054 TAAAATGGTAATTTTTGGTGAAA--TCAGGGT
1 TAAAATGG-AA-TTTT-G-GAAAGTTCGGGGG
*
8638084 TAAAAATGGAATTTTAG-AAGATTCGGGGG
1 T-AAAATGGAATTTTGGAAAG-TTCGGGGG
*
8638113 TAAAATGGTAATTTTTGAAAGTTTCGGGG
1 TAAAATGG-AATTTTGGAAAG-TTCGGGG
8638142 TCAGAATGTA
Statistics
Matches: 121, Mismatches: 9, Indels: 32
0.75 0.06 0.20
Matches are distributed among these distances:
26 2 0.02
27 5 0.04
28 23 0.19
29 31 0.26
30 36 0.30
31 16 0.13
32 8 0.07
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.33
Consensus pattern (28 bp):
TAAAATGGAATTTTGGAAAGTTCGGGGG
Found at i:8638046 original size:59 final size:59
Alignment explanation
Indices: 8637963--8638129 Score: 284
Period size: 59 Copynumber: 2.8 Consensus size: 59
8637953 GATGAAAAAT
*
8637963 GGGTT-AAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 GGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCA
*
8638021 GGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGTGAAATCA
1 GGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCA
*
8638080 GGGTTAAAAATGGAATTTTAG-AAGATTCGGGGGTAAAATGGTAATTTTTG
1 GGGTTAAAAATGGAATTTTGGAAAG-TTCGGGGGTAAAATGGTAATTTTTG
8638130 AAAGTTTCGG
Statistics
Matches: 103, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
58 8 0.08
59 95 0.92
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.33
Consensus pattern (59 bp):
GGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCA
Found at i:8638142 original size:29 final size:28
Alignment explanation
Indices: 8637967--8638135 Score: 125
Period size: 29 Copynumber: 5.8 Consensus size: 28
8637957 AAAAATGGGT
* *
8637967 TAAAATGGAATTTTGGAAAGTTCGGGGG
1 TAAAATGGAATTTTTGAAAGTTCAGGGG
8637995 TAAAATGGTAATTTTTGGTGAAA--TC-GGGG
1 TAAAATGG-AA-TTTT--TGAAAGTTCAGGGG
*
8638024 TTAAAAATGGAATTTTGGAAAGTTCAGGGG
1 -T-AAAATGGAATTTTTGAAAGTTCAGGGG
*
8638054 TAAAATGGTAATTTTTGGTGAAA--TCAGGGT
1 TAAAATGG-AA-TTTT--TGAAAGTTCAGGGG
* *
8638084 TAAAAATGGAATTTTAG-AAGATTCGGGGG
1 T-AAAATGGAATTTTTGAAAG-TTCAGGGG
8638113 TAAAATGGTAATTTTTGAAAGTT
1 TAAAATGG-AATTTTTGAAAGTT
8638136 TCGGGGTCAG
Statistics
Matches: 114, Mismatches: 8, Indels: 37
0.72 0.05 0.23
Matches are distributed among these distances:
26 2 0.02
27 5 0.04
28 22 0.19
29 34 0.30
30 29 0.25
31 14 0.12
32 8 0.07
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (28 bp):
TAAAATGGAATTTTTGAAAGTTCAGGGG
Found at i:8638454 original size:162 final size:162
Alignment explanation
Indices: 8638284--8638596 Score: 538
Period size: 162 Copynumber: 1.9 Consensus size: 162
8638274 TTGTAAATCT
*
8638284 TGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTGGGGATTAAA-TTAAAACAA
1 TGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTCGGGGATTAAATTTAAAA-AA
*
8638348 ATTTAAAATGTCAGGGACTAAATGCATAAATAATCCAAAAAATGACACCTGGCAGCCCCTGGTAC
65 ATTAAAAATGTCAGGGACTAAATGCATAAATAATCCAAAAAATGACACCTGGCAGCCCCTGGTAC
*
8638413 AGTCAAACAGTTAAAAGACTAATTTATAAACCA
130 AGTCAAACAGTCAAAAGACTAATTTATAAACCA
* *
8638446 TGAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTTGGTTCGGGGATTAAATTTAAAAAAA
1 TGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTCGGGGATTAAATTTAAAAAAA
* *
8638511 TTAAAAATGTCAGGGACTAAATGCATAAATAATCCAAAAAATGACACGTGGCAGCCTCTGGTACA
66 TTAAAAATGTCAGGGACTAAATGCATAAATAATCCAAAAAATGACACCTGGCAGCCCCTGGTACA
*
8638576 GTCAAACAGTCAAAGGACTAA
131 GTCAAACAGTCAAAAGACTAA
8638597 ATTGAAAAGC
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
162 136 0.96
163 6 0.04
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (162 bp):
TGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTCGGGGATTAAATTTAAAAAAA
TTAAAAATGTCAGGGACTAAATGCATAAATAATCCAAAAAATGACACCTGGCAGCCCCTGGTACA
GTCAAACAGTCAAAAGACTAATTTATAAACCA
Found at i:8640211 original size:6 final size:6
Alignment explanation
Indices: 8640202--8640301 Score: 82
Period size: 6 Copynumber: 16.8 Consensus size: 6
8640192 TTTTTTAATG
* ** **
8640202 TTAAAT TTAATAT TTTAAT TTTTAT TTAAAT TTAAAT TCGAA- TTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
8640250 TTAAAT AATTAAAT TTAAAT TTAAA- ATCAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
8640297 TTAAA
1 TTAAA
8640302 ATCAATTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
4 4 0.05
5 6 0.08
6 54 0.72
7 5 0.07
8 6 0.08
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:8640261 original size:14 final size:15
Alignment explanation
Indices: 8640227--8640269 Score: 61
Period size: 14 Copynumber: 2.8 Consensus size: 15
8640217 TAATTTTTAT
8640227 TTAAATTTAAATTCGAA
1 TTAAATTTAAA-TC-AA
8640244 TTAAATTTAAAT-AA
1 TTAAATTTAAATCAA
8640258 TTAAATTTAAAT
1 TTAAATTTAAAT
8640270 TTAAAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.54
16 1 0.04
17 11 0.42
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (15 bp):
TTAAATTTAAATCAA
Found at i:8640295 original size:27 final size:29
Alignment explanation
Indices: 8640247--8640311 Score: 98
Period size: 27 Copynumber: 2.2 Consensus size: 29
8640237 ATTCGAATTA
8640247 AATTTAAATAATTAAATTTAAATTTAAAATC
1 AATTTAAAT-ATTAAA-TTAAATTTAAAATC
8640278 AATTTAAAT-TTAAA-TAAATTTAAAATC
1 AATTTAAATATTAAATTAAATTTAAAATC
8640305 AATTTAA
1 AATTTAA
8640312 CTCTAAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
27 20 0.59
29 5 0.15
31 9 0.26
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (29 bp):
AATTTAAATATTAAATTAAATTTAAAATC
Found at i:8640303 original size:17 final size:17
Alignment explanation
Indices: 8640225--8640301 Score: 77
Period size: 17 Copynumber: 4.4 Consensus size: 17
8640215 TTTAATTTTT
* *
8640225 ATTTAAATTTAAATTCGA
1 ATTTAAATTTAAAAT-AA
8640243 A-TTAAATTTAAATAATTAA
1 ATTTAAATTT-AA-AA-TAA
*
8640262 ATTTAAATTTAAAATCA
1 ATTTAAATTTAAAATAA
8640279 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAATAA
8640295 ATTTAAA
1 ATTTAAA
8640302 ATCAATTTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
16 12 0.24
17 20 0.39
18 5 0.10
19 5 0.10
20 9 0.18
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:8640318 original size:27 final size:27
Alignment explanation
Indices: 8640265--8640319 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8640255 TAATTAAATT
*
8640265 TAAATTTAAAATCAATTTAAATTTAAA
1 TAAATTTAAAATCAATTTAAATCTAAA
*
8640292 TAAATTTAAAATCAATTTAACTCTAAA
1 TAAATTTAAAATCAATTTAAATCTAAA
8640319 T
1 T
8640320 TAAACGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (27 bp):
TAAATTTAAAATCAATTTAAATCTAAA
Found at i:8640329 original size:27 final size:27
Alignment explanation
Indices: 8640272--8640329 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
8640262 ATTTAAATTT
* **
8640272 AAAATCAATTTAAATTTAAATAAATTT
1 AAAATCAATTTAAATCTAAATAAATCG
*
8640299 AAAATCAATTTAACTCTAAATTAAA-CG
1 AAAATCAATTTAAATCTAAA-TAAATCG
8640326 AAAA
1 AAAA
8640330 GTCCAAGCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATCAATTTAAATCTAAATAAATCG
Found at i:8640875 original size:41 final size:41
Alignment explanation
Indices: 8640825--8641062 Score: 282
Period size: 41 Copynumber: 6.1 Consensus size: 41
8640815 TGACTTTCAA
* *
8640825 AAGCACCGCTATTGCTCTGACCTTTAGCGGTGCTTTCCCAT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
* * **
8640866 AAGCGCCGCTATTGCTCTGGCCTTTAGCGGCGCTTGCCTGT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
* * * *
8640907 AAGTGCCGCTATTGCTCTGACCTTTAACGCCGCTTT-TCAT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
* *
8640947 ---------TATTGCTCTAACCTTTAGCGGCGCTTGCCCAT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
*
8640979 AAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTTCCCAT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
8641020 AAGCGCCGCTATTGCTCT-ACCTTTAGCGGCGCTTTCCCAT
1 AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
8641060 AAG
1 AAG
8641063 GTGCTATTAC
Statistics
Matches: 164, Mismatches: 23, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
31 23 0.14
32 3 0.02
40 25 0.15
41 113 0.69
ACGTcount: A:0.16, C:0.32, G:0.21, T:0.31
Consensus pattern (41 bp):
AAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCCCAT
Found at i:8640992 original size:72 final size:72
Alignment explanation
Indices: 8640875--8641014 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 72
8640865 TAAGCGCCGC
** ** * *
8640875 TATTGCTCTGGCCTTTAGCGGCGCTTGCCTGTAAGTGCCGCTATTGCTCTGACCTTTAACGCCGC
1 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAACGACGC
8640940 TTTTCAT
66 TTTTCAT
*
8640947 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGC
1 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAACGACGC
8641012 TTT
66 TTT
8641015 CCCATAAGCG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.14, C:0.30, G:0.21, T:0.34
Consensus pattern (72 bp):
TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAACGACGC
TTTTCAT
Found at i:8641032 original size:113 final size:112
Alignment explanation
Indices: 8640834--8641054 Score: 334
Period size: 113 Copynumber: 2.0 Consensus size: 112
8640824 AAAGCACCGC
* * * * *
8640834 TATTGCTCTGACCTTTAGCGGTGCTTTCCCATAAGCGCCGCTATTGCTCTGGCCTTTAGCGGCGC
1 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGC
** *
8640899 TTGCCTGTAAGTGCCGCTATTGCTCTGACCTTTAACGCCGCTTTTCAT
66 TTGCCCATAAGCGCCGCTATTGCTCT-ACCTTTAACGCCGCTTTTCAT
8640947 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGC
1 TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGC
* * *
8641012 TTTCCCATAAGCGCCGCTATTGCTCTACCTTTAGCGGCGCTTT
66 TTGCCCATAAGCGCCGCTATTGCTCTACCTTTAACGCCGCTTT
8641055 CCCATAAGGT
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
112 15 0.15
113 82 0.85
ACGTcount: A:0.14, C:0.31, G:0.21, T:0.33
Consensus pattern (112 bp):
TATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGC
TTGCCCATAAGCGCCGCTATTGCTCTACCTTTAACGCCGCTTTTCAT
Found at i:8642184 original size:2 final size:2
Alignment explanation
Indices: 8642177--8642204 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8642167 TTTGGTTTTA
8642177 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8642205 TCTTTTCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8657321 original size:8 final size:8
Alignment explanation
Indices: 8657301--8657330 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8657291 TTATTTTTTA
8657301 TTTAAAA-
1 TTTAAAAT
8657308 TTTAAAAT
1 TTTAAAAT
8657316 TTTAAAAT
1 TTTAAAAT
8657324 TTTAAAA
1 TTTAAAA
8657331 AAAAAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TTTAAAAT
Found at i:8657321 original size:15 final size:16
Alignment explanation
Indices: 8657301--8657330 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8657291 TTATTTTTTA
8657301 TTTAAAA-TTTAAAAT
1 TTTAAAATTTTAAAAT
8657316 TTTAAAATTTTAAAA
1 TTTAAAATTTTAAAA
8657331 AAAAAACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAAAATTTTAAAAT
Found at i:8660032 original size:5 final size:5
Alignment explanation
Indices: 8659965--8660019 Score: 85
Period size: 5 Copynumber: 11.2 Consensus size: 5
8659955 ATATTTACAT
* *
8659965 TATAA TATGA TATGA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
8660015 T-TAA T
1 TATAA T
8660020 TTCCATATGA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
4 4 0.08
5 44 0.92
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:8664715 original size:13 final size:13
Alignment explanation
Indices: 8664697--8664723 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8664687 AAATAATTAG
8664697 AAATATTAAAATA
1 AAATATTAAAATA
8664710 AAATATTAAAATA
1 AAATATTAAAATA
8664723 A
1 A
8664724 CTAGAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATATTAAAATA
Found at i:8664740 original size:22 final size:20
Alignment explanation
Indices: 8664683--8664740 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 20
8664673 TAGGTTAGAT
*
8664683 AATTAAATAATTAGAAATATTA
1 AATTAAA-AATTA-AAATACTA
*
8664705 AAATAAAATATTAAAATAACTA
1 AATTAAAA-ATTAAAAT-ACTA
8664727 GAATTAAAAATTAA
1 -AATTAAAAATTAA
8664741 TTAGGTTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 5 0.17
22 18 0.60
23 7 0.23
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (20 bp):
AATTAAAAATTAAAATACTA
Found at i:8668329 original size:11 final size:10
Alignment explanation
Indices: 8668275--8668328 Score: 51
Period size: 11 Copynumber: 5.4 Consensus size: 10
8668265 AAATACACTT
8668275 AAAAACATTAA
1 AAAAACATT-A
8668286 AAGAAACATTA
1 AA-AAACATTA
8668297 AAAAA-A-TA
1 AAAAACATTA
*
8668305 AACAA-ATTA
1 AAAAACATTA
8668314 AAAATACATTA
1 AAAA-ACATTA
8668325 AAAA
1 AAAA
8668329 TTCTTTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 7 0.19
9 6 0.16
10 4 0.11
11 13 0.35
12 7 0.19
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.19
Consensus pattern (10 bp):
AAAAACATTA
Found at i:8668478 original size:20 final size:21
Alignment explanation
Indices: 8668445--8668484 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8668435 AAAATGCATA
*
8668445 AAAATAACATCC-AAACAATC
1 AAAATAACAACCAAAACAATC
*
8668465 AAAATAATAACCAAAACAAT
1 AAAATAACAACCAAAACAAT
8668485 AACAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.65, C:0.20, G:0.00, T:0.15
Consensus pattern (21 bp):
AAAATAACAACCAAAACAATC
Found at i:8668506 original size:21 final size:22
Alignment explanation
Indices: 8668477--8668518 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
8668467 AATAATAACC
*
8668477 AAAACAATAACAAAAATAATAG
1 AAAACAATAACAAAAAAAATAG
*
8668499 AAAA-AATAGCAAAAAAAATA
1 AAAACAATAACAAAAAAAATA
8668519 ACAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (22 bp):
AAAACAATAACAAAAAAAATAG
Found at i:8668546 original size:20 final size:19
Alignment explanation
Indices: 8668521--8668618 Score: 81
Period size: 20 Copynumber: 4.9 Consensus size: 19
8668511 AAAAAATAAC
8668521 AATAAAAACAACACCAAAAT
1 AATAAAAA-AACACCAAAAT
**
8668541 AATAAAAAAA-ACCATCAT
1 AATAAAAAAACACCAAAAT
*
8668559 AAAAAAAATAACACCAAAAT
1 AATAAAAA-AACACCAAAAT
* *
8668579 AGTAAAAAATAGCAACCAAAAC
1 AATAAAAAA-A-C-ACCAAAAT
* *
8668601 AACAAAAAAGCACCAAAA
1 AATAAAAAAACACCAAAA
8668619 CAACAATATA
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
18 13 0.21
19 12 0.19
20 22 0.35
21 1 0.02
22 14 0.23
ACGTcount: A:0.69, C:0.18, G:0.03, T:0.09
Consensus pattern (19 bp):
AATAAAAAAACACCAAAAT
Found at i:8668548 original size:35 final size:37
Alignment explanation
Indices: 8668509--8668587 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
8668499 AAAAAATAGC
*
8668509 AAAAAAA-ATAACAATAAAAACAACACCAAAATAATA
1 AAAAAAACATAACAAAAAAAACAACACCAAAATAATA
* * * *
8668545 AAAAAAACCATCATAAAAAAAATAACACCAAAATAGTA
1 AAAAAAA-CATAACAAAAAAAACAACACCAAAATAATA
8668583 AAAAA
1 AAAAA
8668588 TAGCAACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 7 0.19
38 29 0.81
ACGTcount: A:0.73, C:0.14, G:0.01, T:0.11
Consensus pattern (37 bp):
AAAAAAACATAACAAAAAAAACAACACCAAAATAATA
Found at i:8668551 original size:12 final size:12
Alignment explanation
Indices: 8668465--8668551 Score: 50
Period size: 12 Copynumber: 7.3 Consensus size: 12
8668455 CCAAACAATC
**
8668465 AAAATAATAACC
1 AAAATAATAAAA
* *
8668477 AAAACAATAACA
1 AAAATAATAAAA
*
8668489 AAAATAATAGAA
1 AAAATAATAAAA
**
8668501 AAAATAGCAAAA
1 AAAATAATAAAA
* *
8668513 AAAATAACAATA
1 AAAATAATAAAA
* * **
8668525 AAAACAA-CACC
1 AAAATAATAAAA
8668536 AAAATAATAAAA
1 AAAATAATAAAA
8668548 AAAA
1 AAAA
8668552 CCATCATAAA
Statistics
Matches: 56, Mismatches: 18, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
11 7 0.12
12 49 0.88
ACGTcount: A:0.75, C:0.11, G:0.02, T:0.11
Consensus pattern (12 bp):
AAAATAATAAAA
Found at i:8668617 original size:19 final size:21
Alignment explanation
Indices: 8668583--8668624 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
8668573 CAAAATAGTA
8668583 AAAAATAGCAACCAAAACAAC
1 AAAAATAGCAACCAAAACAAC
8668604 AAAAA-AGC-ACCAAAACAAC
1 AAAAATAGCAACCAAAACAAC
8668623 AA
1 AA
8668625 TATAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.62
20 3 0.14
21 5 0.24
ACGTcount: A:0.69, C:0.24, G:0.05, T:0.02
Consensus pattern (21 bp):
AAAAATAGCAACCAAAACAAC
Found at i:8691011 original size:6 final size:6
Alignment explanation
Indices: 8691000--8691035 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
8690990 ATTACAATGT
* *
8691000 CAGCGG CAGCGG CAGCGG CGGCGG CAGCGG CGGCGG
1 CAGCGG CAGCGG CAGCGG CAGCGG CAGCGG CAGCGG
8691036 TTTCAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.11, C:0.33, G:0.56, T:0.00
Consensus pattern (6 bp):
CAGCGG
Found at i:8691017 original size:12 final size:12
Alignment explanation
Indices: 8691000--8691035 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
8690990 ATTACAATGT
*
8691000 CAGCGGCAGCGG
1 CAGCGGCGGCGG
8691012 CAGCGGCGGCGG
1 CAGCGGCGGCGG
8691024 CAGCGGCGGCGG
1 CAGCGGCGGCGG
8691036 TTTCAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.11, C:0.33, G:0.56, T:0.00
Consensus pattern (12 bp):
CAGCGGCGGCGG
Found at i:8697878 original size:24 final size:25
Alignment explanation
Indices: 8697829--8697878 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
8697819 TTCTTTCCAA
* *
8697829 TAAAAAGAAATGATAAATCAAAATT
1 TAAAAAGAAATCATAAATAAAAATT
8697854 TAAAAA-AAATCATAAA-AAAATATT
1 TAAAAAGAAATCATAAATAAAA-ATT
8697878 T
1 T
8697879 GATTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 3 0.14
24 13 0.59
25 6 0.27
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (25 bp):
TAAAAAGAAATCATAAATAAAAATT
Found at i:8698399 original size:19 final size:18
Alignment explanation
Indices: 8698376--8698444 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
8698366 AAAAAAAAAC
8698376 AAAATGATTTTTAAAAATT
1 AAAAT-ATTTTTAAAAATT
* *
8698395 GAAATTAATTTTTAAAATTT
1 -AAAAT-ATTTTTAAAAATT
*
8698415 AAAATATTTATAAAAATT
1 AAAATATTTTTAAAAATT
**
8698433 CTAATATTTTTA
1 AAAATATTTTTA
8698445 TTTTTTTAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 20 0.50
19 4 0.10
20 16 0.40
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (18 bp):
AAAATATTTTTAAAAATT
Found at i:8698405 original size:20 final size:19
Alignment explanation
Indices: 8698376--8698432 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
8698366 AAAAAAAAAC
8698376 AAAATGATTTTTAAAAATTG
1 AAAAT-ATTTTTAAAAATTG
* *
8698396 AAATTAATTTTT-AAAATTT
1 AAAAT-ATTTTTAAAAATTG
*
8698415 AAAATATTTATAAAAATT
1 AAAATATTTTTAAAAATT
8698433 CTAATATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 5 0.16
19 16 0.52
20 10 0.32
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AAAATATTTTTAAAAATTG
Found at i:8699142 original size:335 final size:335
Alignment explanation
Indices: 8698529--8699184 Score: 1215
Period size: 335 Copynumber: 2.0 Consensus size: 335
8698519 TTTTGGAATC
* *
8698529 TGATTATTGATTCAAGTTTATCATACTAAAATATCTTTTTATTATTATTTTGTTATAAAAAAGTT
1 TGATTATTGATTCAAATTTATCATACTAAAATATCTTTTTATTATTATTTTGCTATAAAAAAGTT
8698594 TTCAAATATATATAGTTTCAAATTTATTTGCTCTAACATAAAAATAGTTATATTGTAGTAAGATA
66 TTCAAATATATATAGTTTCAAATTTATTTGCTCTAACATAAAAATAGTTATATTGTAGTAAGATA
*
8698659 TTAATTTAACATTATTAATTTTTTTTAATTTAAATCGAACAATTTCACTCGATTCGACCGAACGC
131 TTAATTTAACATTATTAATTTTTTCTAATTTAAATCGAACAATTTCACTCGATTCGACCGAACGC
* *
8698724 TCACCCTAAATTCGAGTTATTTAAAAATACATTTAAATTAATAGGTAAAATTACATCATTTTGAT
196 TCACCCTAAATTCGAGTTATTTAAAAACACATTTAAATTAATAGGTAAAACTACATCATTTTGAT
8698789 AAATATTTACCCATTAGTCTTACTTTCGTTCTCGAATCGCTCCACTTTCCCTTTTTATTTTGGAA
261 AAATATTTACCCATTAGTCTTACTTTCGTTCTCGAATCGCTCCACTTTCCCTTTTTATTTTGGAA
8698854 TCTAAATAAG
326 TCTAAATAAG
8698864 TGATTATTGATTCAAATTTATCATACTAAAATATCTTTTTTATTATTATTTTGCTATAAAAAAGT
1 TGATTATTGATTCAAATTTATCATACTAAAATATC-TTTTTATTATTATTTTGCTATAAAAAAGT
8698929 TTTCAAATATATATAGTTTCAAATTTATTTGCTCTAACATAAAAATAGTTATATTGTAGTAAGAT
65 TTTCAAATATATATAGTTTCAAATTTATTTGCTCTAACATAAAAATAGTTATATTGTAGTAAGAT
8698994 ATTAATTTAACATTATTAA-TTTTTCTAATTTAAATCGAACAATTTCACTCGATTCGACCGAACG
130 ATTAATTTAACATTATTAATTTTTTCTAATTTAAATCGAACAATTTCACTCGATTCGACCGAACG
* * *
8699058 TTCATCCTAAATTCGAGTTATTTAAAAACACATTTAAGTTAATAGGTAAAACTACATCATTTTGA
195 CTCACCCTAAATTCGAGTTATTTAAAAACACATTTAAATTAATAGGTAAAACTACATCATTTTGA
*
8699123 TAAATATTTACCTATTAGTCTTACTTTCGTTCTCGAATCGCTCCACTTTCCCTTTTTATTTT
260 TAAATATTTACCCATTAGTCTTACTTTCGTTCTCGAATCGCTCCACTTTCCCTTTTTATTTT
8699185 ACTCAAAATT
Statistics
Matches: 311, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
335 199 0.64
336 112 0.36
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (335 bp):
TGATTATTGATTCAAATTTATCATACTAAAATATCTTTTTATTATTATTTTGCTATAAAAAAGTT
TTCAAATATATATAGTTTCAAATTTATTTGCTCTAACATAAAAATAGTTATATTGTAGTAAGATA
TTAATTTAACATTATTAATTTTTTCTAATTTAAATCGAACAATTTCACTCGATTCGACCGAACGC
TCACCCTAAATTCGAGTTATTTAAAAACACATTTAAATTAATAGGTAAAACTACATCATTTTGAT
AAATATTTACCCATTAGTCTTACTTTCGTTCTCGAATCGCTCCACTTTCCCTTTTTATTTTGGAA
TCTAAATAAG
Found at i:8704454 original size:30 final size:30
Alignment explanation
Indices: 8704404--8704460 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8704394 CAAAAGACCC
*
8704404 TTAATCGATTTCTGACAAAA-TTAAATCGA
1 TTAATCGATTTCTAACAAAATTTAAATCGA
8704433 TTAATTCGATTT-TAACTAAAATTTAAAT
1 TTAA-TCGATTTCTAAC-AAAATTTAAAT
8704461 ACCCTACAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 7 0.29
30 11 0.46
31 6 0.25
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (30 bp):
TTAATCGATTTCTAACAAAATTTAAATCGA
Found at i:8705113 original size:14 final size:14
Alignment explanation
Indices: 8705094--8705123 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8705084 TATTCGAATT
*
8705094 TCGAATTATTCAAA
1 TCGAATTAATCAAA
8705108 TCGAATTAATCAAA
1 TCGAATTAATCAAA
8705122 TC
1 TC
8705124 AACTCGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
TCGAATTAATCAAA
Found at i:8705455 original size:42 final size:42
Alignment explanation
Indices: 8705403--8705494 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
8705393 CCATCCATTC
* * *
8705403 AAACCCTCAAATTCATGCTTTTTCTTCAAAAATTCATAAATT
1 AAACCCTCAAATTCATGCTTCTTCTCCAAAAATCCATAAATT
* * * *
8705445 AAACCTTCAAATTCATTCTTCTTCTCCAAAGATCCCTAAATT
1 AAACCCTCAAATTCATGCTTCTTCTCCAAAAATCCATAAATT
8705487 AAACCCTC
1 AAACCCTC
8705495 CATTCTTCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (42 bp):
AAACCCTCAAATTCATGCTTCTTCTCCAAAAATCCATAAATT
Found at i:8705505 original size:3 final size:3
Alignment explanation
Indices: 8705497--8705523 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8705487 AAACCCTCCA
8705497 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
8705524 ATTAGTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8716978 original size:18 final size:18
Alignment explanation
Indices: 8716955--8716989 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8716945 TATAAATTAA
*
8716955 AAAGTCTAATTACAAAAG
1 AAAGTCCAATTACAAAAG
8716973 AAAGTCCAATTACAAAA
1 AAAGTCCAATTACAAAA
8716990 TATAGGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.14, G:0.09, T:0.20
Consensus pattern (18 bp):
AAAGTCCAATTACAAAAG
Found at i:8718976 original size:29 final size:27
Alignment explanation
Indices: 8718910--8718986 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 27
8718900 CCCTAAACTG
8718910 TTCAAAAATGATATTTGTGATCCCAAAAC
1 TTCAAAAAT-ATATTT-TGATCCCAAAAC
* *
8718939 TTCAGAAAACTATATTTTGATCTCGAAAC
1 TTCA-AAAA-TATATTTTGATCCCAAAAC
8718968 TTCCAAAAATTACTATTTT
1 TT-CAAAAA-TA-TATTTT
8718987 ACCTCCAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 22 0.54
30 18 0.44
31 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (27 bp):
TTCAAAAATATATTTTGATCCCAAAAC
Found at i:8719036 original size:30 final size:30
Alignment explanation
Indices: 8719002--8719104 Score: 81
Period size: 31 Copynumber: 3.4 Consensus size: 30
8718992 CAAACTTTCT
*
8719002 AAAATCCCATTTTTAACCTTGATTTCACCC
1 AAAATACCATTTTTAACCTTGATTTCACCC
* *
8719032 AAAATTACCA-TTTTACCCTTAAACTTT---CC
1 AAAA-TACCATTTTTAACCTT-GA-TTTCACCC
* *
8719061 AAAAT-CTCATTTTTAACCCTGATTTCACCAA
1 AAAATAC-CATTTTTAACCTTGATTTCACC-C
8719092 AAAATACCATTTT
1 AAAATACCATTTT
8719105 ACCCCCAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 19
0.68 0.09 0.23
Matches are distributed among these distances:
27 4 0.07
28 4 0.07
29 14 0.25
30 14 0.25
31 16 0.29
32 4 0.07
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (30 bp):
AAAATACCATTTTTAACCTTGATTTCACCC
Found at i:8719037 original size:59 final size:58
Alignment explanation
Indices: 8718970--8719286 Score: 384
Period size: 59 Copynumber: 5.4 Consensus size: 58
8718960 CTCGAAACTT
* * *
8718970 CCAAAAATTACTATTTTACCTCCAAACTTTCTAAAATCCCATTTTTAACCTTGATTTCA
1 CCAAAAATTACCATTTTACC-CCAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCA
* * *
8719029 CCCAAAATTACCATTTTACCCTTAAACTTTCCAAAATCTCATTTTTAACCCTGATTTCA
1 CCAAAAATTACCATTTTACCC-CAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCA
* * * * *
8719088 CCAAAAAATACCATTTTACCCCCAAACCTTT-CATAATTCCATTTTTAACCCCGATTCCA
1 CCAAAAATTACCATTTTA-CCCCAAA-CTTTCCAAAATCCCATTTTTAACCCTGATTTCA
* * *
8719147 TCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATCCCATTTTTAACCCTAATTTCA
1 CCAAAAATTACCATTTTA-CCCCAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCA
** * * *
8719206 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTTCATTTTTGACCTTGATTTTA
1 CCAAAAATTACCATTTTACCCC-AAACTTTCCAAAATCCCATTTTTAACCCTGATTTCA
* *
8719265 CAAAAAATTACCATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
8719287 CGGGTGTCCA
Statistics
Matches: 221, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
58 9 0.04
59 205 0.93
60 7 0.03
ACGTcount: A:0.33, C:0.29, G:0.02, T:0.36
Consensus pattern (58 bp):
CCAAAAATTACCATTTTACCCCAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCA
Found at i:8719240 original size:30 final size:30
Alignment explanation
Indices: 8719032--8719241 Score: 104
Period size: 30 Copynumber: 7.1 Consensus size: 30
8719022 GATTTCACCC
*
8719032 AAAATTACCATTTTACCCTTAAACTTTCC-
1 AAAATTACCATTTTACCCCTAAACTTTCCA
* *
8719061 AAAA-T-CTCATTTTTAACCCT-GA-TTTCACCA
1 AAAATTAC-CA-TTTTACCCCTAAACTTT--CCA
* *
8719091 AAAAATACCATTTTACCCCCAAACCTTT-C-
1 AAAATTACCATTTTACCCCTAAA-CTTTCCA
* * ** **
8719120 ATAATT-CCATTTTTAACCCCGATTCCAT-CA
1 AAAATTACCA-TTTT-ACCCCTAAACTTTCCA
**
8719150 AAAATTACCATTTTACCCCCGAACTTTCC-
1 AAAATTACCATTTTACCCCTAAACTTTCCA
* *
8719179 AAAA-TCCCATTTTTAACCCT-AA-TTTCACCA
1 AAAATTACCA-TTTTACCCCTAAACTTT--CCA
8719209 AAAATTACCATTTTACCCCTAAACTTTCCA
1 AAAATTACCATTTTACCCCTAAACTTTCCA
8719239 AAA
1 AAA
8719242 TTTCATTTTT
Statistics
Matches: 134, Mismatches: 25, Indels: 43
0.66 0.12 0.21
Matches are distributed among these distances:
27 7 0.05
28 13 0.10
29 46 0.34
30 48 0.36
31 13 0.10
32 4 0.03
33 3 0.02
ACGTcount: A:0.35, C:0.30, G:0.01, T:0.33
Consensus pattern (30 bp):
AAAATTACCATTTTACCCCTAAACTTTCCA
Found at i:8721186 original size:20 final size:20
Alignment explanation
Indices: 8721161--8721203 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8721151 TCAGTCCTAA
* *
8721161 GAACAGTGGGGTCAAGTCAT
1 GAACAGTGAGATCAAGTCAT
*
8721181 GAACAGTGAGATCATGTCAT
1 GAACAGTGAGATCAAGTCAT
8721201 GAA
1 GAA
8721204 TATTATAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.30, T:0.21
Consensus pattern (20 bp):
GAACAGTGAGATCAAGTCAT
Found at i:8723425 original size:21 final size:20
Alignment explanation
Indices: 8723375--8723425 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
8723365 ATCTACTTGG
* *
8723375 ATAATTTTCTTAAAATTTTA
1 ATAATTTTTTTAAAATGTTA
8723395 ATGAATTTTTTTAAAAATGTTA
1 AT-AATTTTTTT-AAAATGTTA
8723417 ATAATTTTT
1 ATAATTTTT
8723426 ATGTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 15 0.56
22 10 0.37
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (20 bp):
ATAATTTTTTTAAAATGTTA
Found at i:8724308 original size:31 final size:32
Alignment explanation
Indices: 8724264--8724333 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 32
8724254 GTTAATAACA
**
8724264 ATTTTTTAACATAATTTTTGAT-ATTTTCTCAT
1 ATTTTTTCTCATAATTTTTGATAATTTT-TCAT
8724296 -TTTTTTCTCATAATTTTTGATAATTTTTCAT
1 ATTTTTTCTCATAATTTTTGATAATTTTTCAT
8724327 ATTTTTT
1 ATTTTTT
8724334 TTATATTCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 23 0.68
32 11 0.32
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.64
Consensus pattern (32 bp):
ATTTTTTCTCATAATTTTTGATAATTTTTCAT
Found at i:8724333 original size:10 final size:10
Alignment explanation
Indices: 8724273--8724332 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
8724263 AATTTTTTAA
8724273 CATAATTTTT
1 CATAATTTTT
*
8724283 GAT-ATTTTCT
1 CATAATTTT-T
**
8724293 CATTTTTTTCT
1 CATAATTTT-T
8724304 CATAATTTTT
1 CATAATTTTT
*
8724314 GATAATTTTT
1 CATAATTTTT
8724324 CAT-ATTTTT
1 CATAATTTTT
8724333 TTTATATTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
9 11 0.27
10 17 0.41
11 13 0.32
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.63
Consensus pattern (10 bp):
CATAATTTTT
Found at i:8729423 original size:21 final size:21
Alignment explanation
Indices: 8729380--8729429 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8729370 TCAATATATT
* * *
8729380 TAAATTTATTATTATGTATAA
1 TAAATTTATTAGTATGCAAAA
8729401 TAAATTTATTAGTATGCAAAA
1 TAAATTTATTAGTATGCAAAA
8729422 TAATATTT
1 TAA-ATTT
8729430 TTGACTACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (21 bp):
TAAATTTATTAGTATGCAAAA
Found at i:8730551 original size:19 final size:19
Alignment explanation
Indices: 8730503--8730556 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
8730493 ATTTTTGTAC
*
8730503 TCTCTCGTATTTTTTTATAT
1 TCTCTCATA-TTTTTTATAT
*
8730523 TC-CTTTATATTTTTTATAT
1 TCTC-TCATATTTTTTATAT
8730542 TCTCTCATATATTTT
1 TCTCTCATAT-TTTT
8730557 GGTACTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.19, C:0.15, G:0.02, T:0.65
Consensus pattern (19 bp):
TCTCTCATATTTTTTATAT
Found at i:8730552 original size:21 final size:20
Alignment explanation
Indices: 8730485--8730556 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
8730475 TTTTGTAGCC
* *
8730485 CTCATATTATTTTTGTACTCT
1 CTCATATT-TTTTTATATTCT
*
8730506 CTCGTATTTTTTTATATTC-
1 CTCATATTTTTTTATATTCT
*
8730525 CT-TTATATTTTTTATATTCT
1 CTCATAT-TTTTTTATATTCT
8730545 CTCATATATTTT
1 CTCATAT-TTTT
8730557 GGTACTCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 3 0.07
19 14 0.33
20 11 0.26
21 15 0.35
ACGTcount: A:0.19, C:0.15, G:0.03, T:0.62
Consensus pattern (20 bp):
CTCATATTTTTTTATATTCT
Found at i:8730557 original size:58 final size:60
Alignment explanation
Indices: 8730459--8730578 Score: 140
Period size: 59 Copynumber: 2.0 Consensus size: 60
8730449 CTGTACACAC
* *
8730459 TTATATTCCCTTATATTTTTGTAGCCCTCATATTATTTTT-GTACTCTCTCGT-ATTTTT
1 TTATATTCCCTTATATTTTTATAGCCCTCATATTATTTTTGGTACTCTCTCATAATTTTT
* * * *
8730517 TTATATTCCTTTATATTTTTTATATTCTCTCATA-TA-TTTTGGTACTCTTTCATAATTTTT
1 TTATATTCCCTTATA-TTTTTATA-GCCCTCATATTATTTTTGGTACTCTCTCATAATTTTT
8730577 TT
1 TT
8730579 GAAATACTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
58 18 0.35
59 19 0.37
60 15 0.29
ACGTcount: A:0.19, C:0.16, G:0.05, T:0.60
Consensus pattern (60 bp):
TTATATTCCCTTATATTTTTATAGCCCTCATATTATTTTTGGTACTCTCTCATAATTTTT
Found at i:8731182 original size:3 final size:3
Alignment explanation
Indices: 8731174--8731205 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8731164 CAATAATGTA
8731174 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8731206 AGAATAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8736245 original size:21 final size:20
Alignment explanation
Indices: 8736207--8736249 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
8736197 TACATAATAT
8736207 ATAATATATATAAGAAAAAC
1 ATAATATATATAAGAAAAAC
**
8736227 ATAATATAATATATTAAAAAC
1 ATAATAT-ATATAAGAAAAAC
8736248 AT
1 AT
8736250 TAAAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (20 bp):
ATAATATATATAAGAAAAAC
Found at i:8738479 original size:23 final size:23
Alignment explanation
Indices: 8738405--8738617 Score: 149
Period size: 23 Copynumber: 9.4 Consensus size: 23
8738395 TAAACGGAAC
* * *
8738405 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
8738427 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
8738449 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
8738475 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
8738495 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
8738514 AATCAGAGAGCACACGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
8738537 AATCGGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
8738560 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
8738585 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
8738608 AATCAGAGAG
1 AAACAGAGAG
8738618 AGCGCTAGTG
Statistics
Matches: 150, Mismatches: 25, Indels: 31
0.73 0.12 0.15
Matches are distributed among these distances:
16 10 0.07
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.01
22 18 0.12
23 77 0.51
24 2 0.01
25 28 0.19
26 8 0.05
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:8738513 original size:39 final size:39
Alignment explanation
Indices: 8738459--8738533 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
8738449 GGGCAACAGA
*
8738459 GAGCACACAAAGTGCTAAACAGAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
* *
8738498 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGT
8738534 GCTAATCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
Found at i:8738618 original size:48 final size:46
Alignment explanation
Indices: 8738498--8738620 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 46
8738488 ACAAAGTACT
* * *
8738498 GAGCACACAAAGTGCTAATCAGAGAGCA-CACGAAGTGCTAATCGGA
1 GAGCACACACAGTGCTAATCAGAGAG-AGCACGAAGTGCTAAACAGA
* *
8738544 GAGCACACACAGTGCTAATAACAGAGAGCACGAGACGTGCTAAACAGA
1 GAGCACACACAGTGCTAATCAGAGAGAGCACGA-A-GTGCTAAACAGA
8738592 GAGCACACACAGTGCTAATCAGAGAGAGC
1 GAGCACACACAGTGCTAATCAGAGAGAGC
8738621 GCTAGTGTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.01
46 28 0.42
47 1 0.01
48 37 0.55
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (46 bp):
GAGCACACACAGTGCTAATCAGAGAGAGCACGAAGTGCTAAACAGA
Found at i:8756134 original size:25 final size:25
Alignment explanation
Indices: 8756081--8756126 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
8756071 GTTGGATCCA
8756081 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAATTCTAAAAAGATAATTTG
*
8756106 AATTAAA-TCTAAATA-ATAATT
1 AATTAAATTCTAAAAAGATAATT
8756127 CTCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (25 bp):
AATTAAATTCTAAAAAGATAATTTG
Found at i:8756210 original size:13 final size:13
Alignment explanation
Indices: 8756189--8756222 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8756179 TAAATAATAT
8756189 AATAATAATCCTA
1 AATAATAATCCTA
*
8756202 AATATTAATCCTA
1 AATAATAATCCTA
*
8756215 AAAAATAA
1 AATAATAA
8756223 ATTTTAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATCCTA
Found at i:8759291 original size:52 final size:51
Alignment explanation
Indices: 8759224--8759463 Score: 243
Period size: 52 Copynumber: 4.6 Consensus size: 51
8759214 AAAAGGGTTT
** *
8759224 GATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTACGAGGTCC
1 GATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTA-GAGGTCC
* * *
8759276 GATGACTCTGCGTCATCGTGAGTATATGAAATCCTTTATGGATTTAAAGGTCC
1 GATGACTCTGTGTCATCGTGAGTATATG-AATCCTTTACGGA-TTAGAGGTCC
* ** *
8759329 GATGATTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAGAGGTCT
1 GATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATT-AGAGGTCC
* * * *
8759381 GATAACTCTGTGTCATCGTGAGTATACGAAT-CTCT-CGTGGATTATAAGGTCC
1 GATGACTCTGTGTCATCGTGAGTATATGAATCCTTTAC--GGATTA-GAGGTCC
* *
8759433 GGA-GGCTATGTGTCATCGTGAGTATATGAAT
1 -GATGACTCTGTGTCATCGTGAGTATATGAAT
8759464 GAAGTGAAAT
Statistics
Matches: 156, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
50 1 0.01
51 6 0.04
52 102 0.65
53 44 0.28
54 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (51 bp):
GATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTAGAGGTCC
Found at i:8781765 original size:13 final size:15
Alignment explanation
Indices: 8781747--8781779 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8781737 ATTTGTAATC
8781747 GGGCC-TTTA-GTTT
1 GGGCCTTTTATGTTT
8781760 GGGCCTTTTATGTTT
1 GGGCCTTTTATGTTT
8781775 GGGCC
1 GGGCC
8781780 CTGATTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 4 0.22
15 9 0.50
ACGTcount: A:0.06, C:0.18, G:0.33, T:0.42
Consensus pattern (15 bp):
GGGCCTTTTATGTTT
Found at i:8781853 original size:6 final size:6
Alignment explanation
Indices: 8781842--8781912 Score: 63
Period size: 6 Copynumber: 11.7 Consensus size: 6
8781832 ATATTTAAGC
** * **
8781842 TAAATT TAAATT TAGAAAA AAAATT TAAATT TAAAAA TAAATTT TAAATT
1 TAAATT TAAATT TA-AATT TAAATT TAAATT TAAATT TAAA-TT TAAATT
*
8781892 TAAATC TAAA-T TAAATT TAAA
1 TAAATT TAAATT TAAATT TAAA
8781913 CTTAGAAATA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
5 4 0.08
6 39 0.78
7 7 0.14
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (6 bp):
TAAATT
Found at i:8781867 original size:19 final size:19
Alignment explanation
Indices: 8781843--8781912 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
8781833 TATTTAAGCT
8781843 AAATTTAAATTTAGAAAA-A
1 AAATTTAAATTTA-AAAATA
8781862 AAATTTAAATTTAAAAATA
1 AAATTTAAATTTAAAAATA
* **
8781881 AATTTTAAATTTAAATCT-
1 AAATTTAAATTTAAAAATA
8781899 AAA-TTAAATTTAAA
1 AAATTTAAATTTAAA
8781913 CTTAGAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.24
18 6 0.13
19 29 0.63
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (19 bp):
AAATTTAAATTTAAAAATA
Found at i:8781884 original size:12 final size:12
Alignment explanation
Indices: 8781861--8781912 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
8781851 ATTTAGAAAA
8781861 AAAATTTAAATTT
1 AAAA-TTAAATTT
*
8781874 AAAAATAAATTTT
1 AAAATTAAA-TTT
* *
8781887 AAATTTAAATCT
1 AAAATTAAATTT
8781899 -AAATTAAATTT
1 AAAATTAAATTT
8781910 AAA
1 AAA
8781913 CTTAGAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
11 9 0.29
12 8 0.26
13 14 0.45
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTAAATTT
Found at i:8782579 original size:200 final size:200
Alignment explanation
Indices: 8782177--8783410 Score: 1687
Period size: 200 Copynumber: 6.2 Consensus size: 200
8782167 GGTTCCGTCC
* * * * *
8782177 TGGTCTTCTTCTTTGTGTCTCATCAAGAAGATGA-TCGCAATC-ATCTGTTTTAATTCGCTTCTC
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACT-GC-CTCGAT-TGTTTTAATTCGCTTCTC
* *
8782240 TGAATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGTTAACCTTTTT
63 TGGATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTT
* * * * *
8782305 ATTACTTCGACCTGCTTCTCAGTATCTCGTCAAGG-AGATGGGTTCGAAGATTTGCTCGCT-TTG
128 ATTGCTTCGACCTGCTTCTCAGTGTCTCATC-AGGAAGTTGGGTTCGAAGATTTGCTC-ATGTTG
* *
8782368 AACGTTGAGT
191 AGCGCTGAGT
* *
8782378 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACTGTCTCGATTGTTTTAA-TCTGCTTCTCTG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGATTGTTTTAATTC-GCTTCTCTG
8782442 GATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTAT
65 GATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTAT
* * * * * * * *
8782507 CGCTTCGACTTGCTTTTCAGTGTCTCATCAGGAAGCTGGGTGCGAGGATTTGTTCATGTTGAGCA
130 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATGTTGAGCG
8782572 CTGAGT
195 CTGAGT
* * * *
8782578 TGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGGTTGTTTTAATTCGCTTCTCTGG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGATTGTTTTAATTCGCTTCTCTGG
*
8782643 ATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACC-TTTTATC
66 ATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATT
* * *
8782707 GCTTCGACCTGCTTCTCAGTGTCTCATCATGAAGTTGAGTTCGAAGATTTGCTCATGTTAAGCGC
131 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATGTTGAGCGC
8782772 TGAGT
196 TGAGT
* * * * * *
8782777 TGGTGTTCTTCTTTGTGTCTCATCAGGAAGATTA-TCGCAATC-ATCTATTTTAATTCGCTTCTT
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACT-GC-CTCGAT-TGTTTTAATTCGCTTCTC
* * * *
8782840 TGGATCTCCTC-AGAAAGACGAATCTAGTCCACTTCTTTGTGTCTCATCAAGAAGCTAACCTTTT
63 TGGATCTCCTCAAG-AAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTT
* * *
8782904 TATTGGTTCGACTTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCATGTTGA
127 TATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATGTTGA
8782969 GCGCTGAGT
192 GCGCTGAGT
* * * *
8782978 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTTGCTTGTTTTGATTCGCTTCTCTGG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGATTGTTTTAATTCGCTTCTCTGG
* * * * *
8783043 ATCTCCTTAGGAAGACGAACTTGGTCCACTTCTCTGTGTCTCATCAAGAAGCTAACCTTTTGATT
66 ATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATT
* * * * *
8783108 GCTTCGACTTGCTTCTCAATGTCTCATCAGGAAGTTGGGTTCGAAGATTTGTTCGTGTTGAGCGT
131 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATGTTGAGCGC
8783173 TGAGT
196 TGAGT
* * * *
8783178 TAGTGTTCTTCTCTGTATCTCATCAAGAAGATGA-TCGCCTCGCTTGTTTTGATTCGCTTCTCTG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACT-GCCTCGATTGTTTTAATTCGCTTCTCTG
* *
8783242 GATCTCCTCAAGAAGACGAATCTGGTCTACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTAT
65 GATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTAT
*
8783307 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCGTGTTTGAGC
130 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATG-TTGAGC
8783372 GCTGAGT
194 GCTGAGT
*
8783379 TGGTGTTCTTCTTTGTATCTCATCAGGAAGAT
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGAT
8783411 TACCGCCTTA
Statistics
Matches: 919, Mismatches: 98, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
199 107 0.12
200 630 0.69
201 181 0.20
202 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (200 bp):
TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGATTGTTTTAATTCGCTTCTCTGG
ATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATT
GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCATGTTGAGCGC
TGAGT
Found at i:8795602 original size:29 final size:28
Alignment explanation
Indices: 8795570--8795660 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 28
8795560 TAAAAATGTA
8795570 ATTTTTGATGAAATCGGGGTCAAAATGGG
1 ATTTTTG-TGAAATCGGGGTCAAAATGGG
* *
8795599 A-TTTTG-GAAAGCTTAGGGGT-AAAATGGTA
1 ATTTTTGTGAAA---TCGGGGTCAAAATGG-G
*
8795628 ATTTTTGGTGAAATCGAGGTCAAAATGGG
1 ATTTTT-GTGAAATCGGGGTCAAAATGGG
8795657 ATTT
1 ATTT
8795661 CGAAAGGTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
26 4 0.08
28 12 0.24
29 17 0.35
30 11 0.22
31 1 0.02
32 4 0.08
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (28 bp):
ATTTTTGTGAAATCGGGGTCAAAATGGG
Found at i:8795629 original size:58 final size:58
Alignment explanation
Indices: 8795557--8795778 Score: 268
Period size: 58 Copynumber: 3.8 Consensus size: 58
8795547 TGACCTCTGA
* * * * *
8795557 GGGTAAAAAT-GTAATTTTTGATGAAATCGGGGTCAAAATGGGATTTTGGAAAGCTT-AG
1 GGGT-AAAATGGTAATTTTAGGTGAAATCGGGGTAAAAATGGAATTTT-GAAAGGTTCAG
* * * * * *
8795615 GGGTAAAATGGTAATTTTTGGTGAAATCGAGGTCAAAATGGGATTTCGAAAGGTTCGG
1 GGGTAAAATGGTAATTTTAGGTGAAATCGGGGTAAAAATGGAATTTTGAAAGGTTCAG
* *
8795673 GGGTAAAATAGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGAAAGGTTCAG
1 GGGTAAAATGGTAATTTTAGGTGAAATCG-GGGTAAAAATGGAATTTTGAAAGGTTCAG
*
8795732 GGGTAAAATGGTAATTTTAGGTGAAATTGGGGTTAAAAATGGAATTT
1 GGGTAAAATGGTAATTTTAGGTGAAATCGGGG-TAAAAATGGAATTT
8795779 AGATAGTTTA
Statistics
Matches: 144, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
57 12 0.08
58 68 0.47
59 64 0.44
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.31
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTAGGTGAAATCGGGGTAAAAATGGAATTTTGAAAGGTTCAG
Found at i:8795719 original size:30 final size:30
Alignment explanation
Indices: 8795685--8795778 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
8795675 GTAAAATAGT
8795685 AATTTTAGGTGAAATCGAGGTTAAAAATGG
1 AATTTTAGGTGAAATCGAGGTTAAAAATGG
*
8795715 AA-TTT---TGAAAGGTTC-AGGGGT-AAAATGG
1 AATTTTAGGTGAAA---TCGA-GGTTAAAAATGG
* *
8795743 TAATTTTAGGTGAAATTGGGGTTAAAAATGG
1 -AATTTTAGGTGAAATCGAGGTTAAAAATGG
8795774 AATTT
1 AATTT
8795779 AGATAGTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 22
0.65 0.05 0.29
Matches are distributed among these distances:
26 5 0.10
28 8 0.16
29 10 0.20
30 14 0.29
31 7 0.14
33 5 0.10
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.33
Consensus pattern (30 bp):
AATTTTAGGTGAAATCGAGGTTAAAAATGG
Found at i:8795763 original size:29 final size:29
Alignment explanation
Indices: 8795672--8795778 Score: 73
Period size: 30 Copynumber: 3.6 Consensus size: 29
8795662 GAAAGGTTCG
* *
8795672 GGGGT-AAAATAGTAATTTTAGGTGAAATC
1 GGGGTAAAAAT-GGAATTTTAGGTGAAATT
*
8795701 GAGGTTAAAAATGGAA-TTT---TGAAAGGTT
1 G-GGGTAAAAATGGAATTTTAGGTGAAA--TT
8795729 CAGGGGT-AAAATGGTAATTTTAGGTGAAATT
1 --GGGGTAAAAATGG-AATTTTAGGTGAAATT
8795760 GGGGTTAAAAATGGAATTT
1 GGGG-TAAAAATGGAATTT
8795779 AGATAGTTTA
Statistics
Matches: 61, Mismatches: 4, Indels: 25
0.68 0.04 0.28
Matches are distributed among these distances:
26 5 0.08
28 8 0.13
29 13 0.21
30 16 0.26
31 14 0.23
33 5 0.08
ACGTcount: A:0.37, C:0.02, G:0.29, T:0.32
Consensus pattern (29 bp):
GGGGTAAAAATGGAATTTTAGGTGAAATT
Found at i:8795779 original size:29 final size:29
Alignment explanation
Indices: 8795688--8795780 Score: 79
Period size: 29 Copynumber: 3.2 Consensus size: 29
8795678 AAATAGTAAT
* *
8795688 TTTAGGTGAAATCGAGGTTAAAAATGGAA
1 TTTAGGTGAAATTGGGGTTAAAAATGGAA
8795717 TTT---TGAAAGGTTCAGGGG-T-AAAATGGTAA
1 TTTAGGTGAAA--TT--GGGGTTAAAAATGG-AA
8795746 TTTTAGGTGAAATTGGGGTTAAAAATGGAA
1 -TTTAGGTGAAATTGGGGTTAAAAATGGAA
8795776 TTTAG
1 TTTAG
8795781 ATAGTTTAGG
Statistics
Matches: 51, Mismatches: 2, Indels: 22
0.68 0.03 0.29
Matches are distributed among these distances:
26 5 0.10
28 8 0.16
29 15 0.29
30 9 0.18
31 9 0.18
33 5 0.10
ACGTcount: A:0.37, C:0.02, G:0.29, T:0.32
Consensus pattern (29 bp):
TTTAGGTGAAATTGGGGTTAAAAATGGAA
Found at i:8795792 original size:29 final size:29
Alignment explanation
Indices: 8795703--8795795 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
8795693 GTGAAATCGA
* * *
8795703 GGTTAAAAATGGAATTTTGAAAGGTTCAGG
1 GGTTAAAAATGGAATTTAGATA-GTTTAGG
* **
8795733 GG-T-AAAATGGTAATTTTAGGTGAAATT-GG
1 GGTTAAAAATGG-AA-TTTAGAT-AGTTTAGG
8795762 GGTTAAAAATGGAATTTAGATAGTTTAGG
1 GGTTAAAAATGGAATTTAGATAGTTTAGG
8795791 GGTTA
1 GGTTA
8795796 GAGAGCAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 13
0.69 0.13 0.19
Matches are distributed among these distances:
28 10 0.21
29 20 0.42
30 10 0.21
31 8 0.17
ACGTcount: A:0.35, C:0.01, G:0.30, T:0.33
Consensus pattern (29 bp):
GGTTAAAAATGGAATTTAGATAGTTTAGG
Found at i:8795793 original size:117 final size:116
Alignment explanation
Indices: 8795557--8795781 Score: 283
Period size: 117 Copynumber: 1.9 Consensus size: 116
8795547 TGACCTCTGA
* * *
8795557 GGGTAAAAATGTAATTTTTGATGAAATCGGGGTCAAAATGGGATTTTGGAAAGCTTAGGGGTAAA
1 GGGTAAAAATGTAATTTTAGATGAAATCGGGGTAAAAATGGAATTTTGGAAAGCTTAGGGGTAAA
* * * * *
8795622 ATGGTAATTTTTGGTGAAATCGAGGTCAAAATGGGATTTCGAAAGGTTCGG
66 ATGGTAATTTTAGGTGAAATCGAGGTAAAAATGGAATTTAGAAAGGTTCAG
* * *
8795673 GGGT-AAAATAGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTT-GAAAGGTTCAGGGGT
1 GGGTAAAAAT-GTAATTTTAGATGAAATCG-GGGTAAAAATGGAATTTTGGAAAGCTT-AGGGGT
* *
8795736 AAAATGGTAATTTTAGGTGAAATTGGGGTTAAAAATGGAATTTAGA
63 AAAATGGTAATTTTAGGTGAAATCGAGG-TAAAAATGGAATTTAGA
8795782 TAGTTTAGGG
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
115 5 0.05
116 28 0.30
117 46 0.49
118 14 0.15
ACGTcount: A:0.36, C:0.04, G:0.30, T:0.31
Consensus pattern (116 bp):
GGGTAAAAATGTAATTTTAGATGAAATCGGGGTAAAAATGGAATTTTGGAAAGCTTAGGGGTAAA
ATGGTAATTTTAGGTGAAATCGAGGTAAAAATGGAATTTAGAAAGGTTCAG
Found at i:8796935 original size:3 final size:3
Alignment explanation
Indices: 8796929--8796991 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
8796919 TTCACATCAT
8796929 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8796977 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
8796992 ATGCTATTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8797709 original size:6 final size:6
Alignment explanation
Indices: 8797698--8797773 Score: 66
Period size: 6 Copynumber: 12.7 Consensus size: 6
8797688 ATATTTAAGC
* * **
8797698 TAAATT TAAATT TAGAA-A AAAATT TAAATT TAAAAA TAAATTT TAAATT
1 TAAATT TAAATT TA-AATT TAAATT TAAATT TAAATT TAAA-TT TAAATT
* *
8797747 TAAATC TAAA-T TAAATT TAAACT TAAA
1 TAAATT TAAATT TAAATT TAAATT TAAA
8797774 AATAAATTTG
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
5 6 0.11
6 43 0.78
7 6 0.11
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (6 bp):
TAAATT
Found at i:8797720 original size:18 final size:18
Alignment explanation
Indices: 8797698--8797782 Score: 91
Period size: 18 Copynumber: 4.4 Consensus size: 18
8797688 ATATTTAAGC
8797698 TAAATTTAAATTTAGAAAA
1 TAAATTTAAATTTA-AAAA
8797717 -AAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAAA
8797734 TAAATTTTAAATTTAAATCTAAA
1 TAAA-TTTAAATTT-AA---AAA
*
8797757 TTAAATTTAAACTTAAAAA
1 -TAAATTTAAATTTAAAAA
8797776 TAAATTT
1 TAAATTT
8797783 GAAACCAAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 15
0.78 0.01 0.20
Matches are distributed among these distances:
17 4 0.07
18 23 0.40
19 12 0.21
20 2 0.03
22 2 0.03
23 11 0.19
24 4 0.07
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:8797737 original size:12 final size:12
Alignment explanation
Indices: 8797716--8797773 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 12
8797706 AATTTAGAAA
8797716 AAAATTTAAATTT
1 AAAA-TTAAATTT
*
8797729 AAAAATAAATTTT
1 AAAATTAAA-TTT
* *
8797742 AAATTTAAATCT
1 AAAATTAAATTT
8797754 -AAATTAAATTT
1 AAAATTAAATTT
*
8797765 AAACTTAAA
1 AAAATTAAA
8797774 AATAAATTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
11 9 0.25
12 13 0.36
13 14 0.39
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTAAATTT
Done.