Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 29 of 193
Found at i:9315115 original size:47 final size:43
Alignment explanation
Indices: 9315053--9315180 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 43
9315043 CCTTAAATGA
*
9315053 CAAAATAGTATACACACACACTTACCTTGACACACGTCCGTGTGCCT
1 CAAAATAGTATACACACACAC---CCTT-ACACACGCCCGTGTGCCT
* *
9315100 TAAAACAG--TACACACACACCCTTACACACGCCCGTGTGCCT
1 CAAAATAGTATACACACACACCCTTACACACGCCCGTGTGCCT
*
9315141 CAAAATAGTATACACACACA-CCTTGACACATGCCCGTGTG
1 CAAAATAGTATACACACACACCCTT-ACACACGCCCGTGTG
9315181 TCAATCCATG
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
41 23 0.32
42 8 0.11
43 24 0.33
45 11 0.15
47 6 0.08
ACGTcount: A:0.33, C:0.34, G:0.13, T:0.20
Consensus pattern (43 bp):
CAAAATAGTATACACACACACCCTTACACACGCCCGTGTGCCT
Found at i:9315127 original size:41 final size:43
Alignment explanation
Indices: 9315063--9315180 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 43
9315053 CAAAATAGTA
* *
9315063 TACACACACACTTACCTTGACACACGTCCGTGTGCCTTAAAACAG
1 TACACACACAC--ACCTTGACACACGCCCGTGTGCCTCAAAACAG
*
9315108 TACACACACAC-CCTT-ACACACGCCCGTGTGCCTCAAAATAG
1 TACACACACACACCTTGACACACGCCCGTGTGCCTCAAAACAG
* *
9315149 TATACACACACACCTTGACACATGCCCGTGTG
1 TACACACACACACCTTGACACACGCCCGTGTG
9315181 TCAATCCATG
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
41 33 0.50
42 8 0.12
43 14 0.21
45 11 0.17
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.20
Consensus pattern (43 bp):
TACACACACACACCTTGACACACGCCCGTGTGCCTCAAAACAG
Found at i:9315224 original size:57 final size:56
Alignment explanation
Indices: 9315134--9315254 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 56
9315124 CACACGCCCG
*
9315134 TGTGCCTCAAAATAGTATACACACACACCTTGACACATGCCCGTGTGTC-AATCCA
1 TGTGCCTCAAAATAGTATACACACACACCTTGACACACGCCCGTGTGTCTAATCCA
* *** *
9315189 TGTGCCTCAAAATAGTATACACACACCCCCCTTGACACACGGTTGTGTGTCTTATCCA
1 TGTGCCTCAAAATAGTATACACACA--CACCTTGACACACGCCCGTGTGTCTAATCCA
9315247 TGTGCCTC
1 TGTGCCTC
9315255 CTATAGCCTA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 25 0.44
57 19 0.33
58 13 0.23
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (56 bp):
TGTGCCTCAAAATAGTATACACACACACCTTGACACACGCCCGTGTGTCTAATCCA
Found at i:9317366 original size:25 final size:25
Alignment explanation
Indices: 9317332--9317383 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
9317322 ACATCTCTTG
*
9317332 TCTTGCTTCCTTGATGCTGCCAAAA
1 TCTTGCTTCCTTGATGCTACCAAAA
9317357 TCTTGCTTCCTTGATGCTACCAAAA
1 TCTTGCTTCCTTGATGCTACCAAAA
9317382 TC
1 TC
9317384 AAGGCTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (25 bp):
TCTTGCTTCCTTGATGCTACCAAAA
Found at i:9319279 original size:24 final size:24
Alignment explanation
Indices: 9319252--9319302 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
9319242 TAAAAATAAT
9319252 TATATTAAGAATGTTATTAAATTA
1 TATATTAAGAATGTTATTAAATTA
** * *
9319276 TATATTATTATTTTTATTAAATTA
1 TATATTAAGAATGTTATTAAATTA
9319300 TAT
1 TAT
9319303 TAAATATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (24 bp):
TATATTAAGAATGTTATTAAATTA
Found at i:9319347 original size:22 final size:23
Alignment explanation
Indices: 9319304--9319353 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
9319294 AAATTATATT
9319304 AAATATGATTAAATTATTTATACA
1 AAATATGA-TAAATTATTTATACA
*
9319328 AAATATGA-AAA-TATTATATACC
1 AAATATGATAAATTATT-TATACA
9319350 AAAT
1 AAAT
9319354 TTAAATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.17
22 12 0.50
24 8 0.33
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATATGATAAATTATTTATACA
Found at i:9320829 original size:18 final size:18
Alignment explanation
Indices: 9320806--9320848 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
9320796 GTTTAAGGTG
9320806 TAATTAATTTAAATTT-TT
1 TAATTAA-TTAAATTTATT
9320824 TAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
9320842 TAATTAA
1 TAATTAA
9320849 AAACTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:9322553 original size:48 final size:48
Alignment explanation
Indices: 9322430--9322568 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 48
9322420 TAAAGAAGAC
* * * *
9322430 ATAACATTTCTGCTAAACGTATGGGAGGAGGCTTATGGGAGGTAAAATA
1 ATAACATTGCTCCTAAACGCATGGG-GGAGGCTTATGGAAGGTAAAATA
* * * *
9322479 ATAACATTGCTTCTAGACACATGGGGGAGGCTTATGAAAGGTAAAATA
1 ATAACATTGCTCCTAAACGCATGGGGGAGGCTTATGGAAGGTAAAATA
* * *
9322527 ATAACCTTGCTCCTAAACGCACGGGGGGAGACTTATGGAAGG
1 ATAACATTGCTCCTAAACGCA-TGGGGGAGGCTTATGGAAGG
9322569 CAATAAATAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
48 38 0.51
49 37 0.49
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (48 bp):
ATAACATTGCTCCTAAACGCATGGGGGAGGCTTATGGAAGGTAAAATA
Found at i:9328776 original size:32 final size:29
Alignment explanation
Indices: 9328711--9328874 Score: 197
Period size: 29 Copynumber: 5.6 Consensus size: 29
9328701 TTTGAGGGCT
* *
9328711 AAATGGTGATTTTTGGATGTCCGAGGGTA
1 AAATGGTAATTTTTGGATGTTCGAGGGTA
*
9328740 AAATGGTAATTTTTTGATGTTCGAGGGGGGTA
1 AAATGGTAATTTTTGGATGTTCGA---GGGTA
*
9328772 AAATGGTAATTTTTGGATGTTTGAGGGTA
1 AAATGGTAATTTTTGGATGTTCGAGGGTA
* * * *
9328801 AAAAGGTAATTTTTAGATGTTCGATGGCA
1 AAATGGTAATTTTTGGATGTTCGAGGGTA
*
9328830 AAATGGTAATTTTTGGAAGTTC-AGGGTAA
1 AAATGGTAATTTTTGGATGTTCGAGGGT-A
9328859 AAAT-GTAATTTTTGGA
1 AAATGGTAATTTTTGGA
9328875 AGTACGGGAA
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
28 15 0.13
29 74 0.64
32 27 0.23
ACGTcount: A:0.30, C:0.04, G:0.29, T:0.37
Consensus pattern (29 bp):
AAATGGTAATTTTTGGATGTTCGAGGGTA
Found at i:9328785 original size:61 final size:58
Alignment explanation
Indices: 9328704--9328871 Score: 205
Period size: 61 Copynumber: 2.9 Consensus size: 58
9328694 TGGAAAATTT
* * * *
9328704 GAGGGCTAAATGGTGATTTTTGGATGTCCGAGGGTAAAATGGTAATTTTTTGATGTTC
1 GAGGGCAAAATGGTAATTTTTGGATGTTCGAGGGTAAAATGGTAATTTTTAGATGTTC
* * *
9328762 GAGGGGGGTAAAATGGTAATTTTTGGATGTTTGAGGGTAAAAAGGTAATTTTTAGATGTTC
1 GA---GGGCAAAATGGTAATTTTTGGATGTTCGAGGGTAAAATGGTAATTTTTAGATGTTC
* *
9328823 GATGGCAAAATGGTAATTTTTGGAAGTTC-AGGGTAAAAAT-GTAATTTTT
1 GAGGGCAAAATGGTAATTTTTGGATGTTCGAGGGT-AAAATGGTAATTTTT
9328872 GGAAGTACGG
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
57 14 0.15
58 29 0.31
61 51 0.54
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.37
Consensus pattern (58 bp):
GAGGGCAAAATGGTAATTTTTGGATGTTCGAGGGTAAAATGGTAATTTTTAGATGTTC
Found at i:9328795 original size:90 final size:86
Alignment explanation
Indices: 9328701--9328874 Score: 208
Period size: 90 Copynumber: 2.0 Consensus size: 86
9328691 TTTTGGAAAA
* * * * * *
9328701 TTTGAGGGCT-AAATGGTGATTTTTGGATGTCCGAGGGTAAAATGGTAATTTTTTGATGTTCGAG
1 TTTGAGGG-TAAAAAGGTAATTTTTAGATGTCCGAGGGCAAAATGGTAATTTTTGGAAGTTC-A-
9328765 GGGGGT-AAAATGGTAATTTTTGGATG
63 --GGGTAAAAAT-GTAATTTTTGGATG
* *
9328791 TTTGAGGGTAAAAAGGTAATTTTTAGATGTTCGATGGCAAAATGGTAATTTTTGGAAGTTCAGGG
1 TTTGAGGGTAAAAAGGTAATTTTTAGATGTCCGAGGGCAAAATGGTAATTTTTGGAAGTTCAGGG
9328856 TAAAAATGTAATTTTTGGA
66 TAAAAATGTAATTTTTGGA
9328875 AGTACGGGAA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
86 16 0.22
87 5 0.07
89 2 0.03
90 51 0.69
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.37
Consensus pattern (86 bp):
TTTGAGGGTAAAAAGGTAATTTTTAGATGTCCGAGGGCAAAATGGTAATTTTTGGAAGTTCAGGG
TAAAAATGTAATTTTTGGATG
Found at i:9328866 original size:28 final size:28
Alignment explanation
Indices: 9328767--9328910 Score: 125
Period size: 29 Copynumber: 5.1 Consensus size: 28
9328757 TGTTCGAGGG
* *
9328767 GGGT-AAAATGGTAATTTTTGGATGTTTGA
1 GGGTAAAAAT-GTAATTTTTGGAAG-TTCA
* * *
9328796 GGGTAAAAAGGTAATTTTTAGATGTTCGA
1 GGGTAAAAATGTAATTTTTGGAAGTTC-A
* *
9328825 TGG-CAAAATGGTAATTTTTGGAAGTTCA
1 GGGTAAAAAT-GTAATTTTTGGAAGTTCA
*
9328853 GGGTAAAAATGTAATTTTTGGAAGTAC-
1 GGGTAAAAATGTAATTTTTGGAAGTTCA
* *
9328880 GGG-AAAAATATAATTTTTGAGAAGTTTA
1 GGGTAAAAATGTAATTTTTG-GAAGTTCA
9328908 GGG
1 GGG
9328911 GTCAAAATAT
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
26 15 0.16
27 8 0.08
28 28 0.29
29 40 0.42
30 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (28 bp):
GGGTAAAAATGTAATTTTTGGAAGTTCA
Found at i:9328887 original size:27 final size:27
Alignment explanation
Indices: 9328829--9328904 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 27
9328819 GTTCGATGGC
*
9328829 AAAATGGTAATTTTTGGAAGTTCAGGGTA
1 AAAAT-GTAATTTTTGGAAGTACAGGG-A
9328858 AAAATGTAATTTTTGGAAGTAC-GGGA
1 AAAATGTAATTTTTGGAAGTACAGGGA
*
9328884 AAAATATAATTTTTGAGAAGT
1 AAAATGTAATTTTTG-GAAGT
9328905 TTAGGGGTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 15 0.34
27 8 0.18
28 16 0.36
29 5 0.11
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (27 bp):
AAAATGTAATTTTTGGAAGTACAGGGA
Found at i:9328893 original size:26 final size:28
Alignment explanation
Indices: 9328836--9328927 Score: 98
Period size: 26 Copynumber: 3.3 Consensus size: 28
9328826 GGCAAAATGG
* *
9328836 TAATTTTTGGAAGTTCAGGGTAAAAATG
1 TAATTTTTGGAAGTACAGGGTAAAAATA
9328864 TAATTTTTGGAAGTAC-GGG-AAAAATA
1 TAATTTTTGGAAGTACAGGGTAAAAATA
** *
9328890 TAATTTTTGAGAAGTTTAGGGGTCAAAATA
1 TAATTTTTG-GAAGTACA-GGGTAAAAATA
*
9328920 TGATTTTT
1 TAATTTTT
9328928 AGAAAGTTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 15 0.28
27 8 0.15
28 15 0.28
29 3 0.06
30 13 0.24
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (28 bp):
TAATTTTTGGAAGTACAGGGTAAAAATA
Found at i:9328920 original size:30 final size:28
Alignment explanation
Indices: 9328778--9328937 Score: 103
Period size: 29 Copynumber: 5.6 Consensus size: 28
9328768 GGTAAAATGG
* **
9328778 TAATTTTTGGATGTTTGAGGGTAAAAAGG
1 TAATTTTTGGAAGTTT-AGGGTAAAAATA
* * * * * *
9328807 TAATTTTTAGATGTTCGATGG-CAAAATGG
1 TAATTTTTGGAAGTT-TAGGGTAAAAAT-A
* *
9328836 TAATTTTTGGAAGTTCAGGGTAAAAATG
1 TAATTTTTGGAAGTTTAGGGTAAAAATA
9328864 TAATTTTTGGAAG--TACGGG-AAAAATA
1 TAATTTTTGGAAGTTTA-GGGTAAAAATA
*
9328890 TAATTTTTGAGAAGTTTAGGGGTCAAAATA
1 TAATTTTTG-GAAGTTTA-GGGTAAAAATA
* *
9328920 TGATTTTTAGAAAGTTTA
1 TAATTTTT-GGAAGTTTA
9328938 AGGACTTTCT
Statistics
Matches: 106, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
26 16 0.15
27 7 0.07
28 21 0.20
29 41 0.39
30 20 0.19
31 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (28 bp):
TAATTTTTGGAAGTTTAGGGTAAAAATA
Found at i:9330537 original size:27 final size:26
Alignment explanation
Indices: 9330506--9330556 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
9330496 TAATTGGGTT
9330506 TGTTTGGACATGTAAATTGGATTTTAG
1 TGTTTGGACATG-AAATTGGATTTTAG
* * *
9330533 TGTTTGGGCTTGAAATTGTATTTT
1 TGTTTGGACATGAAATTGGATTTT
9330557 GGACTTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.22, C:0.04, G:0.25, T:0.49
Consensus pattern (26 bp):
TGTTTGGACATGAAATTGGATTTTAG
Found at i:9330563 original size:19 final size:20
Alignment explanation
Indices: 9330535--9330582 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
9330525 GATTTTAGTG
*
9330535 TTTGGGCTTGAAATTGT-AT
1 TTTGGACTTGAAATTGTAAT
*
9330554 TTTGGACTTGAATTTGTAAT
1 TTTGGACTTGAAATTGTAAT
9330574 TTTGGACTT
1 TTTGGACTT
9330583 TTAAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.21, C:0.06, G:0.23, T:0.50
Consensus pattern (20 bp):
TTTGGACTTGAAATTGTAAT
Found at i:9330597 original size:6 final size:6
Alignment explanation
Indices: 9330586--9330696 Score: 67
Period size: 6 Copynumber: 19.5 Consensus size: 6
9330576 TGGACTTTTA
* * *
9330586 AAATTT AAATTT -AATTT AAA-AT AAATTT AAATTT AAA-AT AAATTC
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* * * * * *
9330631 AAACTC AAA-AT AAATTT AAATTT AAA-AT AAATTC AAACTT AAA--T
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
9330675 -AATTT AAAATTT AAAATTT AAA
1 AAATTT -AAATTT -AAATTT AAA
9330697 ATTGGGTTCC
Statistics
Matches: 82, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 21 0.26
6 46 0.56
7 12 0.15
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (6 bp):
AAATTT
Found at i:9330603 original size:11 final size:11
Alignment explanation
Indices: 9330587--9330621 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
9330577 GGACTTTTAA
9330587 AATTTAAATTT
1 AATTTAAATTT
* *
9330598 AATTTAAAATA
1 AATTTAAATTT
9330609 AATTTAAATTT
1 AATTTAAATTT
9330620 AA
1 AA
9330622 AATAAATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:9330620 original size:17 final size:17
Alignment explanation
Indices: 9330591--9330691 Score: 127
Period size: 17 Copynumber: 6.1 Consensus size: 17
9330581 TTTTAAAATT
9330591 TAAATTT-AATTTAAAA
1 TAAATTTAAATTTAAAA
9330607 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* * *
9330624 TAAATTCAAACTCAAAA
1 TAAATTTAAATTTAAAA
9330641 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* *
9330658 TAAATTCAAACTT-AAA
1 TAAATTTAAATTTAAAA
9330674 T-AATTTAAAATTTAAAA
1 TAAATTT-AAATTTAAAA
9330691 T
1 T
9330692 TTAAAATTGG
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
15 4 0.06
16 16 0.22
17 52 0.72
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:9330627 original size:22 final size:22
Alignment explanation
Indices: 9330586--9330627 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
9330576 TGGACTTTTA
**
9330586 AAATTTAAATTTAATTTAAAAT
1 AAATTTAAATTTAAAATAAAAT
9330608 AAATTTAAATTTAAAATAAA
1 AAATTTAAATTTAAAATAAA
9330628 TTCAAACTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATTTAAATTTAAAATAAAAT
Found at i:9330644 original size:34 final size:33
Alignment explanation
Indices: 9330602--9330691 Score: 146
Period size: 34 Copynumber: 2.7 Consensus size: 33
9330592 AAATTTAATT
9330602 TAAAATAAATTTAAATTTAAAATAAATTCAAAC
1 TAAAATAAATTTAAATTTAAAATAAATTCAAAC
9330635 TCAAAATAAATTTAAATTTAAAATAAATTCAAAC
1 T-AAAATAAATTTAAATTTAAAATAAATTCAAAC
*
9330669 TTAAAT-AATTTAAAATTTAAAAT
1 TAAAATAAATTT-AAATTTAAAAT
9330692 TTAAAATTGG
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
32 5 0.09
33 16 0.30
34 33 0.61
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.36
Consensus pattern (33 bp):
TAAAATAAATTTAAATTTAAAATAAATTCAAAC
Found at i:9330687 original size:7 final size:7
Alignment explanation
Indices: 9330642--9330699 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
9330632 AACTCAAAAT
9330642 AAATTT-
1 AAATTTA
9330648 AAATTTA
1 AAATTTA
9330655 AAA--T-
1 AAATTTA
*
9330659 AAATTCA
1 AAATTTA
* *
9330666 AACTTAA
1 AAATTTA
9330673 ATAATTTA
1 A-AATTTA
9330681 AAATTTA
1 AAATTTA
9330688 AAATTTA
1 AAATTTA
9330695 AAATT
1 AAATT
9330700 GGGTTCCATT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
4 3 0.07
5 1 0.02
6 6 0.14
7 27 0.64
8 5 0.12
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATTTA
Found at i:9333087 original size:17 final size:17
Alignment explanation
Indices: 9333065--9333098 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9333055 ACAAGGTTGC
9333065 AGTTTAGGTTAAATAAG
1 AGTTTAGGTTAAATAAG
9333082 AGTTTAGGTTAAATAAG
1 AGTTTAGGTTAAATAAG
9333099 CCAACCAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (17 bp):
AGTTTAGGTTAAATAAG
Found at i:9333205 original size:28 final size:25
Alignment explanation
Indices: 9333168--9333252 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 25
9333158 AATTTATAAA
*
9333168 TTTATCATTTTTAAGATTTTTATATT
1 TTTAT-ATTTTTAAAATTTTTATATT
*
9333194 TTCCTATAATTTTTTAAAATTTTAAATATT
1 TT--TAT-A-TTTTTAAAATTTT-TATATT
*
9333224 TTTATATTTTTATAAAATTTTATATT
1 TTTATATTTTTA-AAATTTTTATATT
9333250 TTT
1 TTT
9333253 TTAAACTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
26 16 0.33
27 7 0.14
28 7 0.14
29 12 0.24
30 7 0.14
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.64
Consensus pattern (25 bp):
TTTATATTTTTAAAATTTTTATATT
Found at i:9333234 original size:18 final size:18
Alignment explanation
Indices: 9333168--9333294 Score: 73
Period size: 18 Copynumber: 6.8 Consensus size: 18
9333158 AATTTATAAA
*
9333168 TTTATCATTTTT-AAGATT
1 TTTAT-ATTTTTAAATATT
9333186 TTTATATTTTCCTATAAT-TT
1 TTTATATTTT--TA-AATATT
* *
9333206 TTTAAAATTTTAAATATT
1 TTTATATTTTTAAATATT
*
9333224 TTTATATTTTTATAAAATT
1 TTTATATTTTTA-AATATT
*
9333243 TTATATTTTTTTAAACT-TT
1 TT-TATATTTTTAAA-TATT
* * *
9333262 ATTATAATTTT-AATAAGT
1 TTTATATTTTTAAAT-ATT
*
9333280 TATATATTTTTAAAT
1 TTTATATTTTTAAAT
9333295 TTGTATTACT
Statistics
Matches: 83, Mismatches: 15, Indels: 21
0.70 0.13 0.18
Matches are distributed among these distances:
16 1 0.01
17 10 0.12
18 35 0.42
19 16 0.19
20 19 0.23
21 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTATATTTTTAAATATT
Found at i:9333710 original size:13 final size:13
Alignment explanation
Indices: 9333692--9333716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9333682 TTTGCTCTTG
9333692 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
9333705 TTTTTCTTTTTT
1 TTTTTCTTTTTT
9333717 TAACTAAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:9336494 original size:2 final size:2
Alignment explanation
Indices: 9336489--9336537 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
9336479 TATATATATA
9336489 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
9336531 TG TG TG T
1 TG TG TG T
9336538 AATAATAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:9339737 original size:27 final size:28
Alignment explanation
Indices: 9339707--9339765 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
9339697 TTTTTTTTGT
*
9339707 ATTTGATTGAT-GAGAAAATATAAGAAA
1 ATTTGATTGATGGAAAAAATATAAGAAA
*
9339734 ATTTGTTTGATGGGAAAAAATATAAGAAA
1 ATTTGATTGAT-GGAAAAAATATAAGAAA
9339763 ATT
1 ATT
9339766 GGTAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 10 0.36
29 18 0.64
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (28 bp):
ATTTGATTGATGGAAAAAATATAAGAAA
Found at i:9349172 original size:17 final size:16
Alignment explanation
Indices: 9349138--9349177 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
9349128 CAGAGACATG
9349138 TGGAAACTTTAGTTTT
1 TGGAAACTTTAGTTTT
9349154 TGGAAACTTT-GCTTTT
1 TGGAAACTTTAG-TTTT
*
9349170 TTGAAACT
1 TGGAAACT
9349178 GGCACCAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.47
Consensus pattern (16 bp):
TGGAAACTTTAGTTTT
Found at i:9349458 original size:52 final size:52
Alignment explanation
Indices: 9349402--9349505 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 52
9349392 AATCCAGCCC
* * *
9349402 GATATTTTATTTCAAAAGAAAAATGTATAAAAAATAATTTATTAATTTTTTT
1 GATATTTAATTTCAAAAGAAAAATATATAAAAAATAATTTACTAATTTTTTT
* *
9349454 GATATTTAATTTTAAAAGAAAAATATATAAAAATTAATTTACTAATTTTTTT
1 GATATTTAATTTCAAAAGAAAAATATATAAAAAATAATTTACTAATTTTTTT
9349506 TAAAAAAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (52 bp):
GATATTTAATTTCAAAAGAAAAATATATAAAAAATAATTTACTAATTTTTTT
Found at i:9350769 original size:15 final size:15
Alignment explanation
Indices: 9350751--9350780 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
9350741 GTATATTTTA
9350751 TTTTAATATTTAATAT
1 TTTTAAT-TTTAATAT
9350767 TTTTAATTTTAATA
1 TTTTAATTTTAATA
9350781 AATTTTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTAATTTTAATAT
Found at i:9350833 original size:18 final size:17
Alignment explanation
Indices: 9350810--9350849 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
9350800 TCTAACATAT
*
9350810 TTTATATTTATAATTTTA
1 TTTATATATAT-ATTTTA
*
9350828 TTTATATATATTTTTTA
1 TTTATATATATATTTTA
9350845 TTTAT
1 TTTAT
9350850 GTATTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATATATATATTTTA
Found at i:9350842 original size:16 final size:16
Alignment explanation
Indices: 9350818--9350861 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
9350808 ATTTTATATT
*
9350818 TATAATTTTATTTATA
1 TATATTTTTATTTATA
*
9350834 TATATTTTTTATTTATG
1 TATA-TTTTTATTTATA
*
9350851 TATTTTTTTAT
1 TATATTTTTAT
9350862 ATTTTCAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (16 bp):
TATATTTTTATTTATA
Found at i:9350845 original size:17 final size:16
Alignment explanation
Indices: 9350823--9350861 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
9350813 ATATTTATAA
9350823 TTTTATTTATATATATT
1 TTTTATTTATATAT-TT
*
9350840 TTTTATTTATGTATTT
1 TTTTATTTATATATTT
9350856 TTTTAT
1 TTTTAT
9350862 ATTTTCAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTATTTATATATTT
Found at i:9350846 original size:29 final size:29
Alignment explanation
Indices: 9350806--9350863 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
9350796 AAATTCTAAC
9350806 ATATTTTATATTTAT-AATTTTATTTATAT
1 ATATTTTATATTTATGAATTTT-TTTATAT
* *
9350835 ATATTTTTTATTTATGTATTTTTTTATAT
1 ATATTTTATATTTATGAATTTTTTTATAT
9350864 TTTCAAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (29 bp):
ATATTTTATATTTATGAATTTTTTTATAT
Found at i:9351325 original size:29 final size:30
Alignment explanation
Indices: 9351293--9351349 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
9351283 GTCTAATGTG
9351293 TAATTATATACACAA-ATTTTAATTTTGTT
1 TAATTATATACACAAGATTTTAATTTTGTT
*
9351322 TAATTATATACATAAGATTTTAATTTTG
1 TAATTATATACACAAGATTTTAATTTTG
9351350 ATTCAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (30 bp):
TAATTATATACACAAGATTTTAATTTTGTT
Found at i:9351762 original size:20 final size:20
Alignment explanation
Indices: 9351737--9351775 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9351727 TAAATAATTT
9351737 ATTTAAATAATTAATTATTA
1 ATTTAAATAATTAATTATTA
*
9351757 ATTTAAGTAATTAATTATT
1 ATTTAAATAATTAATTATT
9351776 TTTTCCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
ATTTAAATAATTAATTATTA
Found at i:9354309 original size:32 final size:32
Alignment explanation
Indices: 9354267--9354327 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
9354257 AAAATTATTG
***
9354267 GTGACTGACACGTTGTTGGACAAAACAAATTA
1 GTGACTGACACGTCACTGGACAAAACAAATTA
*
9354299 GTGATTGACACGTCACTGGACAAAACAAA
1 GTGACTGACACGTCACTGGACAAAACAAA
9354328 AGATAAGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (32 bp):
GTGACTGACACGTCACTGGACAAAACAAATTA
Found at i:9355197 original size:19 final size:20
Alignment explanation
Indices: 9355156--9355198 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
9355146 TTTTTACTTT
*
9355156 TTTTTTTAAATATTGATATA
1 TTTTTTTAAATATTAATATA
9355176 TTTTTTT-AATATTTAATA-A
1 TTTTTTTAAATA-TTAATATA
9355195 TTTT
1 TTTT
9355199 ATACATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTTTTAAATATTAATATA
Found at i:9357169 original size:27 final size:27
Alignment explanation
Indices: 9357132--9357192 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
9357122 ACGAGCCCAA
* * *
9357132 AATCAAAATAATGCTCTTTCGAGTCAG
1 AATCAGAATAACGCTCTTTCGAGACAG
9357159 AATCAGAATAACGCTCTTTCGAGACAG
1 AATCAGAATAACGCTCTTTCGAGACAG
9357186 AATCAGA
1 AATCAGA
9357193 TTACTCCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (27 bp):
AATCAGAATAACGCTCTTTCGAGACAG
Found at i:9367239 original size:18 final size:17
Alignment explanation
Indices: 9367216--9367281 Score: 73
Period size: 17 Copynumber: 3.8 Consensus size: 17
9367206 TAACCAAAAT
*
9367216 TTTATTTTTGATTTTTTA
1 TTTA-TTTTAATTTTTTA
9367234 TTTATTTTAATTTTTTA
1 TTTATTTTAATTTTTTA
*
9367251 TGCTTATTTT-ATTTTAT-
1 T--TTATTTTAATTTTTTA
9367268 TTTATTTTAATTTT
1 TTTATTTTAATTTT
9367282 AAGATTGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.16
16 5 0.12
17 14 0.33
18 10 0.23
19 7 0.16
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTATTTTAATTTTTTA
Found at i:9367240 original size:23 final size:23
Alignment explanation
Indices: 9367214--9367270 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
9367204 TTTAACCAAA
* *
9367214 ATTTTATTTTTGAT-TTTTTATTT
1 ATTTTATTTTTGATGCTTAT-TTT
*
9367237 ATTTTAATTTTTTATGCTTATTTT
1 ATTTT-ATTTTTGATGCTTATTTT
9367261 ATTTTATTTT
1 ATTTTATTTT
9367271 ATTTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 10 0.34
24 16 0.55
25 3 0.10
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (23 bp):
ATTTTATTTTTGATGCTTATTTT
Found at i:9367283 original size:6 final size:5
Alignment explanation
Indices: 9367214--9367282 Score: 52
Period size: 5 Copynumber: 13.2 Consensus size: 5
9367204 TTTAACCAAA
* * *
9367214 ATTTT ATTTTT GATTTT TTATTT ATTTT A-ATT -TTTT ATGCTT ATTTT
1 ATTTT A-TTTT -ATTTT AT-TTT ATTTT ATTTT ATTTT AT-TTT ATTTT
9367261 ATTTT ATTTT ATTTT AATTTT A
1 ATTTT ATTTT ATTTT -ATTTT A
9367283 AGATTGTATA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
4 4 0.08
5 25 0.49
6 21 0.41
7 1 0.02
ACGTcount: A:0.22, C:0.01, G:0.03, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:9376742 original size:9 final size:8
Alignment explanation
Indices: 9376710--9376739 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
9376700 AAATATTTAA
*
9376710 TTAATATT
1 TTAAAATT
9376718 TTAAAATT
1 TTAAAATT
9376726 TTAAAATT
1 TTAAAATT
9376734 TTAAAA
1 TTAAAA
9376740 ATTCAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTAAAATT
Found at i:9376930 original size:18 final size:18
Alignment explanation
Indices: 9376891--9376934 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
9376881 AATAAAAATT
9376891 AAAATTAAAAAAAGATCGA
1 AAAATTAAAAAAAGATC-A
*
9376910 AAAATTAAATAAAGAGT-A
1 AAAATTAAAAAAAGA-TCA
9376928 AAAATTA
1 AAAATTA
9376935 CTTTTAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 14 0.61
20 1 0.04
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (18 bp):
AAAATTAAAAAAAGATCA
Found at i:9377504 original size:17 final size:18
Alignment explanation
Indices: 9377478--9377524 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
9377468 TACTGAAAAT
*
9377478 ATTTTGTAAAAAATAA-G
1 ATTTTTTAAAAAATAAGG
9377495 ATTTTTT--AAAATAAGTG
1 ATTTTTTAAAAAATAAG-G
9377512 ATTTTTTAAAAAA
1 ATTTTTTAAAAAA
9377525 AATAAATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.28
17 14 0.56
19 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
ATTTTTTAAAAAATAAGG
Found at i:9377507 original size:15 final size:16
Alignment explanation
Indices: 9377487--9377522 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
9377477 TATTTTGTAA
9377487 AAAATAA-GATTTTTT
1 AAAATAAGGATTTTTT
9377502 AAAATAAGTGATTTTTT
1 AAAATAAG-GATTTTTT
9377519 AAAA
1 AAAA
9377523 AAAATAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
17 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (16 bp):
AAAATAAGGATTTTTT
Found at i:9379310 original size:98 final size:98
Alignment explanation
Indices: 9379137--9379334 Score: 281
Period size: 98 Copynumber: 2.0 Consensus size: 98
9379127 AACCTTGAAA
** * *
9379137 AAGGGTATTCGATTATCTTGGTTTGAAAAAAATTCACGCCTAGTAAGTTAAGGCACAAATTTTCG
1 AAGGGTATTCGATTATCCCGGTTTGAAAAAAATTCACACCTAGTAAGTTAAGGCACAAATTTTCA
* * * *
9379202 AAATAGGAAATAAAGGAATATTGCCTCGATTTT
66 AAACACGAAATAAAAGAATATTACCTCGATTTT
* *
9379235 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAA-TCGCACCTAGTAAGTTAAGGCACAAATTTTT
1 AAGGGTATTCGATTATCCCGGTTTGAA-AAAAATTCACACCTAGTAAGTTAAGGCACAAATTTTC
*
9379299 AAAACCCGAAATAAAAGAATATTACCTCGATTTT
65 AAAACACGAAATAAAAGAATATTACCTCGATTTT
9379333 AA
1 AA
9379335 ATATTTTAGA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
98 83 0.94
99 5 0.06
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (98 bp):
AAGGGTATTCGATTATCCCGGTTTGAAAAAAATTCACACCTAGTAAGTTAAGGCACAAATTTTCA
AAACACGAAATAAAAGAATATTACCTCGATTTT
Found at i:9379483 original size:16 final size:17
Alignment explanation
Indices: 9379462--9379493 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9379452 AAAAATATAC
9379462 AAAAAT-AAATATGAAA
1 AAAAATAAAATATGAAA
9379478 AAAAATAAAATATGAA
1 AAAAATAAAATATGAA
9379494 TTATGAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAAATAAAATATGAAA
Found at i:9379498 original size:24 final size:23
Alignment explanation
Indices: 9379448--9379510 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
9379438 AATATAAAGA
*
9379448 ATGAAAAAATATACAAAAATAAAT
1 ATGAAAAAAAATA-AAAAATAAAT
* *
9379472 ATGAAAAAAAATAAAATATGAATT
1 ATGAAAAAAAATAAAAAAT-AAAT
**
9379496 ATGAATCAAAATAAA
1 ATGAAAAAAAATAAA
9379511 TGAGAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 5 0.15
24 28 0.85
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.22
Consensus pattern (23 bp):
ATGAAAAAAAATAAAAAATAAAT
Found at i:9379703 original size:28 final size:28
Alignment explanation
Indices: 9379672--9379963 Score: 126
Period size: 29 Copynumber: 10.1 Consensus size: 28
9379662 TTTAGGCAAA
*
9379672 TTCGAGGTAAAAACATGATTTTTGGAAG
1 TTCGAGGTAAAAATATGATTTTTGGAAG
* * * *
9379700 TTCGGGGGTAAAAATGTGATCTTTGAAAG
1 TTC-GAGGTAAAAATATGATTTTTGGAAG
* * * * *
9379729 TTTGAGGGCAAAAATGTAATTTTT-AAAGG
1 TTCGA-GGTAAAAATATGATTTTTGGAA-G
* * *
9379758 TTCGGAGG-CAAAATGTGATTTTTGAAAG
1 TTC-GAGGTAAAAATATGATTTTTGGAAG
* * ** * *
9379786 CTCGAGGGAAAAATAAAATATGTGGAAG
1 TTCGAGGTAAAAATATGATTTTTGGAAG
* * *
9379814 TTCGAGGGAAAAAATATAATTTTTAGAAG
1 TTCGA-GGTAAAAATATGATTTTTGGAAG
*
9379843 TTCG-GG-AGAAAATATGTAATTTTTGAGAAA
1 TTCGAGGTA-AAAATATG--ATTTTTG-GAAG
* *
9379873 TTCGAGGGTAAAAATGTAATTTTTGAGAAG
1 TTCGA-GGTAAAAATATGATTTTTG-GAAG
* * * *
9379903 TTCGGGGGTTAAAATGTGA-TTTTAGAAG
1 TTC-GAGGTAAAAATATGATTTTTGGAAG
* * * *
9379931 TGTAGGGGTCAAAATATGATTTCTGGACAG
1 T-TCGAGGTAAAAATATGATTTTTGGA-AG
9379961 TTC
1 TTC
9379964 AAGGACCTTC
Statistics
Matches: 203, Mismatches: 43, Indels: 35
0.72 0.15 0.12
Matches are distributed among these distances:
26 1 0.00
27 13 0.06
28 58 0.29
29 84 0.41
30 37 0.18
31 1 0.00
32 8 0.04
33 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (28 bp):
TTCGAGGTAAAAATATGATTTTTGGAAG
Found at i:9379821 original size:85 final size:88
Alignment explanation
Indices: 9379726--9379887 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 88
9379716 TGATCTTTGA
* * * * * *
9379726 AAGTTTGAGGGCAAAAATGTAATTTTTA-AAGGTTC-GGAGGCAAA-ATGTGATTTTTGA-AAGC
1 AAGTTCGAGGGAAAAAATATAATTTTTAGAA-GTTCGGGA-GAAAATATGTAATTTTTGAGAAAC
9379787 TCGAGGG-AAAAATAAAATATGTGG
64 TCGAGGGTAAAAATAAAATATGTGG
*
9379811 AAGTTCGAGGGAAAAAATATAATTTTTAGAAGTTCGGGAGAAAATATGTAATTTTTGAGAAATTC
1 AAGTTCGAGGGAAAAAATATAATTTTTAGAAGTTCGGGAGAAAATATGTAATTTTTGAGAAACTC
9379876 GAGGGTAAAAAT
66 GAGGGTAAAAAT
9379888 GTAATTTTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 33 0.51
86 17 0.26
87 9 0.14
88 6 0.09
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (88 bp):
AAGTTCGAGGGAAAAAATATAATTTTTAGAAGTTCGGGAGAAAATATGTAATTTTTGAGAAACTC
GAGGGTAAAAATAAAATATGTGG
Found at i:9379892 original size:30 final size:30
Alignment explanation
Indices: 9379618--9379925 Score: 198
Period size: 29 Copynumber: 10.6 Consensus size: 30
9379608 GAAGAGTTTG
* * **
9379618 GGGTTAAAATGTAATTTTGGA-AAGTTTTA
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
* * *
9379647 GGGGT-AAAATGTCATTTTAG-GCAAATTCGA
1 -GGGTAAAAATGTAATTTTTGAG-AAGTTCGA
** * *
9379677 -GGTAAAAACATGATTTTTG-GAAGTTCGG
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
* * *
9379705 GGGTAAAAATGTGATCTTTGA-AAGTTTGA
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
*
9379734 GGGCAAAAATGTAATTTTT-A-AAGGTTCG-
1 GGGTAAAAATGTAATTTTTGAGAA-GTTCGA
* * *
9379762 GAGG-CAAAATGTGATTTTTGA-AAGCTCGA
1 G-GGTAAAAATGTAATTTTTGAGAAGTTCGA
** * *
9379791 GGG-AAAAATAAAATATGTG-GAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
* *
9379819 GGGAAAAAATATAATTTTT-AGAAGTTCG-
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
*
9379847 GGAG-AAAATATGTAATTTTTGAGAAATTCGA
1 GG-GTAAAA-ATGTAATTTTTGAGAAGTTCGA
*
9379878 GGGTAAAAATGTAATTTTTGAGAAGTTCGG
1 GGGTAAAAATGTAATTTTTGAGAAGTTCGA
* *
9379908 GGGTTAAAATGTGATTTT
1 GGGTAAAAATGTAATTTT
9379926 AGAAGTGTAG
Statistics
Matches: 222, Mismatches: 39, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
28 58 0.26
29 104 0.47
30 54 0.24
31 6 0.03
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (30 bp):
GGGTAAAAATGTAATTTTTGAGAAGTTCGA
Found at i:9380893 original size:6 final size:6
Alignment explanation
Indices: 9380882--9380946 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
9380872 TTAAATTGAT
* *
9380882 TTTAAA TTTAAA TTTAAA -GTAAA TTTAAA TAGGTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA TTTAAA TTTAAA
* *
9380931 -ATCAA TTTAAA TTTAA
1 TTTAAA TTTAAA TTTAA
9380947 TCAAATTTAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
5 7 0.15
6 35 0.74
8 5 0.11
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:9380904 original size:17 final size:17
Alignment explanation
Indices: 9380884--9380946 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 17
9380874 AAATTGATTT
9380884 TAAATTTAAATTTAAAG
1 TAAATTTAAATTTAAAG
*
9380901 TAAATTTAAA--T-AGG
1 TAAATTTAAATTTAAAG
*
9380915 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAG
*
9380932 TCAATTTAAATTTAA
1 TAAATTTAAATTTAA
9380947 TCAAATTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 12 0.31
15 1 0.03
16 1 0.03
17 25 0.64
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTTAAAG
Found at i:9380921 original size:31 final size:31
Alignment explanation
Indices: 9380884--9380942 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
9380874 AAATTGATTT
*
9380884 TAAATTTAAATTTAAAGTAAATTTAAATAGG
1 TAAATTTAAATTTAAAATAAATTTAAATAGG
*
9380915 TAAATTTAAATTTAAAATCAATTTAAAT
1 TAAATTTAAATTTAAAATAAATTTAAAT
9380943 TTAATCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.41
Consensus pattern (31 bp):
TAAATTTAAATTTAAAATAAATTTAAATAGG
Found at i:9380952 original size:27 final size:27
Alignment explanation
Indices: 9380922--9380974 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
9380912 AGGTAAATTT
*
9380922 AAATTTAAAATCAAT-TTAAATTTAATC
1 AAATTTAAAAT-AATATTAAACTTAATC
9380949 AAATTTAAAATAATATTAAACTTAAT
1 AAATTTAAAATAATATTAAACTTAAT
9380975 ATTAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (27 bp):
AAATTTAAAATAATATTAAACTTAATC
Found at i:9380959 original size:17 final size:17
Alignment explanation
Indices: 9380885--9380957 Score: 68
Period size: 17 Copynumber: 4.5 Consensus size: 17
9380875 AATTGATTTT
9380885 AAATTTAAATTTAAAGT-
1 AAATTTAAATTTAAA-TC
**
9380902 AAATTTAAA--TAGGT-
1 AAATTTAAATTTAAATC
9380916 AAATTTAAATTTAAAATC
1 AAATTTAAATTT-AAATC
9380934 -AATTTAAATTT-AATC
1 AAATTTAAATTTAAATC
9380949 AAATTTAAA
1 AAATTTAAA
9380958 ATAATATTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
14 10 0.21
15 6 0.13
16 9 0.19
17 22 0.47
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (17 bp):
AAATTTAAATTTAAATC
Found at i:9380976 original size:12 final size:12
Alignment explanation
Indices: 9380953--9380985 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9380943 TTAATCAAAT
9380953 TTAAAA-TAATA
1 TTAAAATTAATA
*
9380964 TTAAACTTAATA
1 TTAAAATTAATA
9380976 TTAAAATTAA
1 TTAAAATTAA
9380986 AAGTCCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
TTAAAATTAATA
Found at i:9381602 original size:15 final size:16
Alignment explanation
Indices: 9381582--9381626 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
9381572 TGAATAAATT
9381582 TATTAATAATGAAT-A
1 TATTAATAATGAATAA
9381597 TATTAATAATAGTAATAA
1 TATTAATAAT-G-AATAA
*
9381615 TAATAATAATGA
1 TATTAATAATGA
9381627 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 10 0.38
16 2 0.08
17 4 0.15
18 10 0.38
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (16 bp):
TATTAATAATGAATAA
Found at i:9382844 original size:30 final size:29
Alignment explanation
Indices: 9382761--9382847 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 29
9382751 CCTTGGAAGT
* *
9382761 CCCTAAACTATCTAAAAATTATACTTTAAC
1 CCCTAAACT-TCTAAAAATTACATTTTAAC
9382791 CCCTAAACTTCTTAAAAATTACATTTTAA-
1 CCCTAAACTTC-TAAAAATTACATTTTAAC
*
9382820 CCCTAAAAACTTCTCAAAATTACATTTT
1 CCCT--AAACTTCTAAAAATTACATTTT
9382848 TGCCTCCGAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
29 6 0.12
30 38 0.75
31 7 0.14
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (29 bp):
CCCTAAACTTCTAAAAATTACATTTTAAC
Found at i:9383053 original size:59 final size:59
Alignment explanation
Indices: 9382878--9383110 Score: 235
Period size: 59 Copynumber: 4.0 Consensus size: 59
9382868 TCTGTTTTTG
* * * **
9382878 ACCTCGATTTTACCAAAAATTTCCATTTTGCCCCCGAACTTTCTAAAATTCCATTTTTT
1 ACCTCGATTTTACCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCCATTTTAA
* *
9382937 ACCTTGATTTTACCAAAAATTACCATTTTACCCTCAAACTTTCTAAAATTCCATTTTAA
1 ACCTCGATTTTACCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCCATTTTAA
* * * * *
9382996 ACCTCGATTTGACCAAAAATTTCCATTTTACCCTTGAA-TATCCAAAATGT-CACTTTTAA
1 ACCTCGATTTTACCAAAAATTACCATTTTACCCTCGAACTTTCTAAAAT-TCCA-TTTTAA
* * * * *
9383055 CCCT-AATTTTTCC-AAAATTACCATTTTACCCCCGAGA--GTCTAAAATTACCATTTTA
1 ACCTCGATTTTACCAAAAATTACCATTTTACCCTCGA-ACTTTCTAAAATT-CCATTTTA
9383111 CTCTCGGGTA
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
56 1 0.01
57 31 0.21
58 19 0.13
59 95 0.65
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (59 bp):
ACCTCGATTTTACCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCCATTTTAA
Found at i:9384812 original size:17 final size:18
Alignment explanation
Indices: 9384790--9384930 Score: 106
Period size: 17 Copynumber: 8.4 Consensus size: 18
9384780 GGACATTATT
*
9384790 AATTTAAATTT-AGAATA
1 AATTTAAATTTAAAAATA
*
9384807 ATTTTAAATTTAAAAATA
1 AATTTAAATTTAAAAATA
*
9384825 AATTTAAA-CT-----TA
1 AATTTAAATTTAAAAATA
9384837 AA-TTAAATTTAAAAATA
1 AATTTAAATTTAAAAATA
* *
9384854 AATTTAAACTT-AAATTA
1 AATTTAAATTTAAAAATA
** *
9384871 AATTTAAATTTTTAAACA
1 AATTTAAATTTAAAAATA
*
9384889 AATTTAAACTT-AAAATA
1 AATTTAAATTTAAAAATA
**
9384906 AATTTAACCTT-AAAATA
1 AATTTAAATTTAAAAATA
9384923 AATTTAAA
1 AATTTAAA
9384931 AAAAATGGGT
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
11 5 0.05
12 5 0.05
17 57 0.58
18 32 0.32
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (18 bp):
AATTTAAATTTAAAAATA
Found at i:9384827 original size:29 final size:28
Alignment explanation
Indices: 9384810--9384936 Score: 133
Period size: 29 Copynumber: 4.6 Consensus size: 28
9384800 TAGAATAATT
9384810 TTAAATTTAAAAATAAATTTAAACTTAAA
1 TTAAATTTAAAAATAAATTTAAAC-TAAA
9384839 TTAAATTTAAAAATAAATTTAAACTTAAA
1 TTAAATTTAAAAATAAATTTAAAC-TAAA
*
9384868 TTAAATTT--AAAT--TTTTAAAC-AAA
1 TTAAATTTAAAAATAAATTTAAACTAAA
* *
9384891 TTTAAACTT-AAAATAAATTTAACCTTAAA
1 -TTAAATTTAAAAATAAATTTAAAC-TAAA
*
9384920 ATAAATTTAAAAA-AAAT
1 TTAAATTTAAAAATAAAT
9384937 GGGTTTAGTT
Statistics
Matches: 85, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
23 3 0.04
24 7 0.08
25 11 0.13
27 10 0.12
28 10 0.12
29 44 0.52
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (28 bp):
TTAAATTTAAAAATAAATTTAAACTAAA
Found at i:9384830 original size:35 final size:34
Alignment explanation
Indices: 9384790--9384930 Score: 150
Period size: 35 Copynumber: 4.2 Consensus size: 34
9384780 GGACATTATT
* *
9384790 AATTTAAATTTAGAATAATTTTAAATTTAAAAATA
1 AATTTAAACTTA-AATAAATTTAAATTTAAAAATA
9384825 AATTTAAAC-T---TAAA-TTAAATTTAAAAATA
1 AATTTAAACTTAAATAAATTTAAATTTAAAAATA
** *
9384854 AATTTAAACTTAAATTAAATTTAAATTTTTAAACA
1 AATTTAAACTTAAA-TAAATTTAAATTTAAAAATA
**
9384889 AATTTAAACTTAAAATAAATTTAACCTT-AAAATA
1 AATTTAAACTT-AAATAAATTTAAATTTAAAAATA
9384923 AATTTAAA
1 AATTTAAA
9384931 AAAAATGGGT
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
29 24 0.27
30 4 0.04
34 17 0.19
35 42 0.47
36 3 0.03
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (34 bp):
AATTTAAACTTAAATAAATTTAAATTTAAAAATA
Found at i:9384930 original size:6 final size:6
Alignment explanation
Indices: 9384790--9384881 Score: 84
Period size: 6 Copynumber: 15.8 Consensus size: 6
9384780 GGACATTATT
* ** *
9384790 AATTTA AATTTA GAA--TA ATTTTA AATTTA AAAATA AATTTA AACTTA
1 AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
** *
9384837 AA-TTA AATTTA AAAATA AATTTA AACTTA AA-TTA AATTTA AATTT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTT
9384882 TTAAACAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
4 1 0.01
5 12 0.17
6 54 0.78
7 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (6 bp):
AATTTA
Found at i:9385401 original size:39 final size:39
Alignment explanation
Indices: 9385345--9385723 Score: 232
Period size: 39 Copynumber: 9.7 Consensus size: 39
9385335 AATGACTGTA
* * * *
9385345 ATCTGCCCCATGATCGGGGTAAGAGATTGGTTGATAATG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
* * * ** **
9385384 ATCTGTCCCAAGCTCGGGGTAAAAGATCGAATGACT-GCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGA-TAGTG
*
9385423 ATCTGCCCCAAGCTCGGGGTAAGAGAATGGCTGATAGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
* * *
9385462 ATCTGCCTCAAGTTCTGGGTAAGAGA-T--C-GAATAGCTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTG-ATAG-TG
** * * ** *
9385499 TATTCTGCTTCATGATCGGGGTAAGAGATTTACTGATGGTG
1 -A-TCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
* * ** * ** *
9385540 ATCTTCTCTTAGCTCGGGATAAGAGATTTACTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
* * *
9385579 ATCTGCACCAAGCTCGGGATAAGAGATTGGTTGAT-GATG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAG-TG
* * ** * *
9385618 AACTGCCTCCAAGCTCGGGGTAAGAGATCGAATGGCT-GTA
1 ATCTGCC-CCAAGCTCGGGGTAAGAGATTGGCT-GATAGTG
* * * * *
9385658 ATCTGCCCCATGATCGGGGTAAGAAATTTGCTGATAATG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
*
9385697 ATCTGCCCCAAGCTCGGGATAAGAGAT
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT
9385724 GAGATGGCTA
Statistics
Matches: 263, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
35 1 0.00
36 5 0.02
37 2 0.01
38 6 0.02
39 208 0.79
40 31 0.12
41 5 0.02
42 4 0.02
43 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATAGTG
Found at i:9385464 original size:78 final size:78
Alignment explanation
Indices: 9385332--9385765 Score: 399
Period size: 78 Copynumber: 5.6 Consensus size: 78
9385322 CTTTATTGCT
* * * *
9385332 TCGAATGACTGTAATCTGCCCCATGATCGGGGTAAGAGATTGGTTGATAATGATCTGTCCCAAGC
1 TCGAATGACTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAGC
*
9385397 TCGGGGTAAAAGA
66 TCGGGGTAAGAGA
* * * * *
9385410 TCGAATGACTGCAATCTGCCCCAAGCTCGGGGTAAGAGAATGGCTGATAGTGATCTGCCTCAAGT
1 TCGAATGACTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAGC
*
9385475 TCTGGGTAAGAGA
66 TCGGGGTAAGAGA
* ** * ** * * * **
9385488 TCGAAT-AGCTGTATTCTGCTTCATGATCGGGGTAAGAGATTTACTGATGGTGATCTTCTCTTAG
1 TCGAATGA-CTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAG
*
9385552 CTCGGGATAAGAGA
65 CTCGGGGTAAGAGA
** * * * * * * *
9385566 TTTACTGA-TGGTGATCTGCACCAAGCTCGGGATAAGAGATTGGTTGAT-GATGAACTGCCTCCA
1 TCGAATGACT-GTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAG-TGATCTGCC-CCA
9385629 AGCTCGGGGTAAGAGA
63 AGCTCGGGGTAAGAGA
* * * * *
9385645 TCGAATGGCTGTAATCTGCCCCATGATCGGGGTAAGAAATTTGCTGATAATGATCTGCCCCAAGC
1 TCGAATGACTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAGC
*
9385710 TCGGGATAAGAGA
66 TCGGGGTAAGAGA
* * ** * *
9385723 T-GAGATGGCTATAATCTGCCCTGAGTTCGGGGTAAGATATTGG
1 TCGA-ATGACTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGG
9385766 ATGGCTACAA
Statistics
Matches: 278, Mismatches: 70, Indels: 16
0.76 0.19 0.04
Matches are distributed among these distances:
77 5 0.02
78 213 0.77
79 59 0.21
80 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (78 bp):
TCGAATGACTGTAATCTGCCCCAAGATCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAGC
TCGGGGTAAGAGA
Found at i:9385740 original size:39 final size:38
Alignment explanation
Indices: 9385579--9385801 Score: 146
Period size: 39 Copynumber: 5.7 Consensus size: 38
9385569 ACTGATGGTG
* * * *
9385579 ATCTGCACCAAGCTCGGGATAAGAGATTGG-TTGATGATGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGA-TGGATGGCT-AT-A
* *
9385619 A-CTGCCTCCAAGCTCGGGGTAAGAGATCGAATGGCTGTA
1 ATCTGCC-CCAAGCTCGGGGTAAGAGAT-GGATGGCTATA
* * * * * * *
9385658 ATCTGCCCCATGATCGGGGTAAGAAATTTGCT-GATAATG
1 ATCTGCCCCAAGCTCGGGGTAAGAGA-TGGATGGCT-ATA
*
9385697 ATCTGCCCCAAGCTCGGGATAAGAGATGAGATGGCTATA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATG-GATGGCTATA
** * * *
9385736 ATCTGCCCTGAGTTCGGGGTAAGATATTGGATGGCTACA
1 ATCTGCCCCAAGCTCGGGGTAAGAGA-TGGATGGCTATA
* * *
9385775 ATCTACCTCAAGCTTGGGGTAAGAGAT
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT
9385802 TTACTGATGA
Statistics
Matches: 138, Mismatches: 36, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
38 4 0.03
39 100 0.72
40 31 0.22
41 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (38 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATGGATGGCTATA
Found at i:9385802 original size:235 final size:232
Alignment explanation
Indices: 9385358--9385810 Score: 533
Period size: 235 Copynumber: 1.9 Consensus size: 232
9385348 TGCCCCATGA
* * *
9385358 TCGGGGTAAGAGATTGGTTGATAATGATCTGTCCCAAGCTCGGGGTAAAAGATCGAATGACTGCA
1 TCGGGATAAGAGATTGGTTGATAATGAACTGCCCCAAGCTCGGGGTAAAAGATCGAATGACTGCA
* * * *
9385423 ATCTGCCCCAAGCTCGGGGTAAGAGAATGGCTGATAGTGATCTGCCTCAAGTTCTGGGTAAGAGA
66 ATCTGCCCCAAGATCGGGGTAAGAGAATGGCTGATAATGATCTGCCCCAAGCTCTGGGTAAGAGA
* * * * * *
9385488 TCGAATAGCTGTATTCTGCTTCATGATCGGGGTAAGAGATTTACTGATGGTGATCTTCTCTTAGC
131 TCGAATAGCTATAATCTGC-TCATGATCGGGGTAAGAGATTTA-GGATGGTAATCTCCTCTAAGC
9385553 TCGGGATAAGAGATTTACTGATGGTGATCTGCACCAAGC
194 TCGGGATAAGAGATTTACTGATGGTGATCTGCACCAAGC
* * * *
9385592 TCGGGATAAGAGATTGGTTGATGATGAACTGCCTCCAAGCTCGGGGTAAGAGATCGAATGGCTGT
1 TCGGGATAAGAGATTGGTTGATAATGAACTGCC-CCAAGCTCGGGGTAAAAGATCGAATGACTGC
* *
9385657 AATCTGCCCCATGATCGGGGTAAGA-AATTTGCTGATAATGATCTGCCCCAAGCTC-GGGATAAG
65 AATCTGCCCCAAGATCGGGGTAAGAGAA-TGGCTGATAATGATCTGCCCCAAGCTCTGGG-TAAG
* * *
9385720 AGAT-GAGATGGCTATAATCTGC-CCTGAGTTCGGGGTAAGATA-TT-GGATGGCTACAATCTAC
128 AGATCGA-ATAGCTATAATCTGCTCATGA--TCGGGGTAAGAGATTTAGGATGG-T--AATCT-C
* *
9385781 CTC-AAGCTTGGGGTAAGAGATTTACTGATG
186 CTCTAAGCTCGGGATAAGAGATTTACTGATG
9385811 ATTATTTGGC
Statistics
Matches: 185, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
232 5 0.03
233 5 0.03
234 38 0.21
235 134 0.72
236 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (232 bp):
TCGGGATAAGAGATTGGTTGATAATGAACTGCCCCAAGCTCGGGGTAAAAGATCGAATGACTGCA
ATCTGCCCCAAGATCGGGGTAAGAGAATGGCTGATAATGATCTGCCCCAAGCTCTGGGTAAGAGA
TCGAATAGCTATAATCTGCTCATGATCGGGGTAAGAGATTTAGGATGGTAATCTCCTCTAAGCTC
GGGATAAGAGATTTACTGATGGTGATCTGCACCAAGC
Found at i:9385888 original size:39 final size:39
Alignment explanation
Indices: 9385827--9385913 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
9385817 TGGCCTAGGC
* *
9385827 TCGGGGTAAGAAATCGAATGGTTGCAATCTGCCTCATGA
1 TCGGGGTAAGAAATCGAATGGTTGCAATCTGCCCCAAGA
* ** * * * *
9385866 TCGGGGTAAGAGATTTACTGGTTGTAATTTGCCCCAAGC
1 TCGGGGTAAGAAATCGAATGGTTGCAATCTGCCCCAAGA
9385905 TCGGGGTAA
1 TCGGGGTAA
9385914 AAGGTCAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (39 bp):
TCGGGGTAAGAAATCGAATGGTTGCAATCTGCCCCAAGA
Found at i:9385896 original size:78 final size:78
Alignment explanation
Indices: 9385749--9385913 Score: 188
Period size: 78 Copynumber: 2.1 Consensus size: 78
9385739 TGCCCTGAGT
* * * * * *
9385749 TCGGGGTAAGATATTGGATGGCTACAATCTACCTCAAGCTTGGGGTAAGAGATTTACTGATGATT
1 TCGGGGTAAGAAATCGAATGGCTACAATCTACCTCAAGATCGGGGTAAGAGATTTACTGATGATA
* * *
9385814 ATTTGGCCTAGGC
66 ATTTGCCCCAAGC
* * * * *
9385827 TCGGGGTAAGAAATCGAATGGTTGCAATCTGCCTCATGATCGGGGTAAGAGATTTACTGGTTG-T
1 TCGGGGTAAGAAATCGAATGGCTACAATCTACCTCAAGATCGGGGTAAGAGATTTACT-GATGAT
9385891 AATTTGCCCCAAGC
65 AATTTGCCCCAAGC
9385905 TCGGGGTAA
1 TCGGGGTAA
9385914 AAGGTCAATT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 69 0.96
79 3 0.04
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (78 bp):
TCGGGGTAAGAAATCGAATGGCTACAATCTACCTCAAGATCGGGGTAAGAGATTTACTGATGATA
ATTTGCCCCAAGC
Found at i:9393236 original size:98 final size:98
Alignment explanation
Indices: 9393063--9393260 Score: 310
Period size: 98 Copynumber: 2.0 Consensus size: 98
9393053 AACCTTGAAA
** * *
9393063 AAGGGTATTCGTTTATCCCGATTTGAAAAAAATTCGCGCCTAGTAAGTTAATGCACAAATTCTCG
1 AAGGGTATTCAATTATCCCGATTTGAAAAAAATTCGCGCCTAGTAAGTTAAGGCACAAATTCTCA
9393128 AAACATGAAATAAAGGAATATTGCCTCGATTTT
66 AAACATGAAATAAAGGAATATTGCCTCGATTTT
* *
9393161 AAGGGTATTCAATTATCCCGGTTTGAAGAAAAA-TCGCGCCTAGTAAGTTAAGGCACAAATTTTC
1 AAGGGTATTCAATTATCCCGATTTGAA-AAAAATTCGCGCCTAGTAAGTTAAGGCACAAATTCTC
9393225 AAAACCA-GAAATAAAGGAATATTGCCTCGATTTT
65 AAAA-CATGAAATAAAGGAATATTGCCTCGATTTT
9393259 AA
1 AA
9393261 ATATTTTGGA
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
98 85 0.92
99 7 0.08
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (98 bp):
AAGGGTATTCAATTATCCCGATTTGAAAAAAATTCGCGCCTAGTAAGTTAAGGCACAAATTCTCA
AAACATGAAATAAAGGAATATTGCCTCGATTTT
Found at i:9393568 original size:29 final size:30
Alignment explanation
Indices: 9393542--9393705 Score: 101
Period size: 29 Copynumber: 5.6 Consensus size: 30
9393532 AGAGAGTTTG
* *
9393542 GGGGTTAAAATGTAATTTTGGAAAGTTTTA
1 GGGGTAAAAATGTAATTTTAGAAAGTTTTA
* **
9393572 GGGGTAAAAATGTCATTTTAGAAAAATTTA
1 GGGGTAAAAATGTAATTTTAGAAAGTTTTA
* * **
9393602 -GGGTAAAAACGTGATTTTTAG-AAGTTCGA
1 GGGGTAAAAATGT-AATTTTAGAAAGTTTTA
* **
9393631 -GGGCAAAAATGTAATTTTTAG-AAGTTCGA
1 GGGGTAAAAATGTAA-TTTTAGAAAGTTTTA
* **
9393660 -GGG-CAAAATGTAATTTTTAG-AAGTTCGA
1 GGGGTAAAAATGTAA-TTTTAGAAAGTTTTA
*
9393688 -GGGTAACAATGTAATTTT
1 GGGGTAAAAATGTAATTTT
9393706 TGGAAGTTCG
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 32 0.28
29 50 0.44
30 31 0.27
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (30 bp):
GGGGTAAAAATGTAATTTTAGAAAGTTTTA
Found at i:9393582 original size:30 final size:30
Alignment explanation
Indices: 9393542--9393624 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
9393532 AGAGAGTTTG
* * **
9393542 GGGGTTAAAATGTAATTTTGGAAAGTTTTA
1 GGGGTAAAAATGTAATTTTAGAAAAATTTA
*
9393572 GGGGTAAAAATGTCATTTTAGAAAAATTTA
1 GGGGTAAAAATGTAATTTTAGAAAAATTTA
* *
9393602 -GGGTAAAAACGTGATTTTTAGAA
1 GGGGTAAAAATGT-AATTTTAGAA
9393625 GTTCGAGGGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 11 0.25
30 33 0.75
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (30 bp):
GGGGTAAAAATGTAATTTTAGAAAAATTTA
Found at i:9393684 original size:57 final size:57
Alignment explanation
Indices: 9393615--9393763 Score: 203
Period size: 57 Copynumber: 2.6 Consensus size: 57
9393605 TAAAAACGTG
*
9393615 ATTTTTAGAAGTTCGAGGGCAAAAATGTAATTTTTAGAAGTTCGAGGGC-AAAATGTA
1 ATTTTTAGAAGTTCGAGGGCAAAAATGTAATTTTTAGAAGTTCGA-GGCAAAAATATA
* * *
9393672 ATTTTTAGAAGTTCGAGGGTAACAATGTAATTTTTGGAAGTTCGAGGCAAAAATATA
1 ATTTTTAGAAGTTCGAGGGCAAAAATGTAATTTTTAGAAGTTCGAGGCAAAAATATA
* *
9393729 ATTTTTGAGAAGTTCGAAGGTC-AAAATGTGATTTT
1 ATTTTT-AGAAGTTCG-AGGGCAAAAATGTAATTTT
9393764 GGAAAAGTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
56 3 0.04
57 55 0.68
58 20 0.25
59 3 0.04
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (57 bp):
ATTTTTAGAAGTTCGAGGGCAAAAATGTAATTTTTAGAAGTTCGAGGCAAAAATATA
Found at i:9393711 original size:29 final size:29
Alignment explanation
Indices: 9393601--9393763 Score: 206
Period size: 29 Copynumber: 5.7 Consensus size: 29
9393591 AGAAAAATTT
* * *
9393601 AGGGTAAAAACGTGATTTTTAGAAGTTCG
1 AGGGCAAAAATGTAATTTTTAGAAGTTCG
9393630 AGGGCAAAAATGTAATTTTTAGAAGTTCG
1 AGGGCAAAAATGTAATTTTTAGAAGTTCG
9393659 AGGGC-AAAATGTAATTTTTAGAAGTTCG
1 AGGGCAAAAATGTAATTTTTAGAAGTTCG
* * *
9393687 AGGGTAACAATGTAATTTTTGGAAGTTCG
1 AGGGCAAAAATGTAATTTTTAGAAGTTCG
*
9393716 A-GGCAAAAATATAATTTTTGAGAAGTTCG
1 AGGGCAAAAATGTAATTTTT-AGAAGTTCG
* *
9393745 AAGGTC-AAAATGTGATTTT
1 -AGGGCAAAAATGTAATTTT
9393764 GGAAAAGTTT
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
28 42 0.36
29 61 0.52
30 12 0.10
31 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (29 bp):
AGGGCAAAAATGTAATTTTTAGAAGTTCG
Found at i:9395439 original size:6 final size:6
Alignment explanation
Indices: 9395428--9395562 Score: 99
Period size: 6 Copynumber: 23.3 Consensus size: 6
9395418 AGACATTATT
** *
9395428 AATTTA AATTTA GAA--T- AATTTAA AATTTA AAAATA AATTTA AACTTA
1 AATTTA AATTTA -AATTTA AATTT-A AATTTA AATTTA AATTTA AATTTA
* *
9395475 AA-TTA AATTTA AATTTA AATTTTTA AA--TA AATTTA AACTTA AA-ATA
1 AATTTA AATTTA AATTTA AA--TTTA AATTTA AATTTA AATTTA AATTTA
* * *
9395521 AATTTA AACTTA AA-ATA AATTTA AATTTA AA-ATA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA
9395563 AAGAATGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
3 2 0.02
4 4 0.04
5 19 0.18
6 65 0.63
7 7 0.07
8 6 0.06
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (6 bp):
AATTTA
Found at i:9395465 original size:29 final size:27
Alignment explanation
Indices: 9395432--9395528 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 27
9395422 ATTATTAATT
9395432 TAAATTTAGAATAATTTAAAATTTAAAAA
1 TAAATTTA-AATAATTT-AAATTTAAAAA
* **
9395461 TAAATTTAAACTTAAATTAAATTTAAATT
1 TAAATTTAAA--TAATTTAAATTTAAAAA
*
9395490 TAAATTTTTAAATAAATTTAAACTT-AAAA
1 TAAA--TTTAAAT-AATTTAAATTTAAAAA
9395519 TAAATTTAAA
1 TAAATTTAAA
9395529 CTTAAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
27 6 0.11
28 2 0.04
29 28 0.50
30 14 0.25
31 6 0.11
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (27 bp):
TAAATTTAAATAATTTAAATTTAAAAA
Found at i:9395483 original size:17 final size:17
Alignment explanation
Indices: 9395428--9395562 Score: 130
Period size: 17 Copynumber: 8.5 Consensus size: 17
9395418 AGACATTATT
* *
9395428 AATTTAAATTTAGAAT-
1 AATTTAAACTTAAAATA
*
9395444 AATTTAAAATTTAAAAATA
1 AATTT-AAACTT-AAAATA
*
9395463 AATTTAAACTTAAATTA
1 AATTTAAACTTAAAATA
9395480 AATTTAAA-TT----TA
1 AATTTAAACTTAAAATA
9395492 AATTT----TT-AAATA
1 AATTTAAACTTAAAATA
9395504 AATTTAAACTTAAAATA
1 AATTTAAACTTAAAATA
9395521 AATTTAAACTTAAAATA
1 AATTTAAACTTAAAATA
*
9395538 AATTTAAATTTAAAATA
1 AATTTAAACTTAAAATA
9395555 AATTTAAA
1 AATTTAAA
9395563 AAGAATGGTT
Statistics
Matches: 104, Mismatches: 4, Indels: 21
0.81 0.03 0.16
Matches are distributed among these distances:
9 2 0.02
12 14 0.13
16 9 0.09
17 65 0.62
18 9 0.09
19 5 0.05
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (17 bp):
AATTTAAACTTAAAATA
Found at i:9395495 original size:41 final size:41
Alignment explanation
Indices: 9395444--9395551 Score: 137
Period size: 41 Copynumber: 2.6 Consensus size: 41
9395434 AATTTAGAAT
*
9395444 AATTTAAAATTTAAAAATAAATTTAAACTTAAATTAAATTTA
1 AATTT-AAATTTAAAAATAAATTTAAACTTAAAATAAATTTA
**
9395486 AATTTAAATTTTTAAATAAATTTAAACTTAAAATAAATTTA
1 AATTTAAATTTAAAAATAAATTTAAACTTAAAATAAATTTA
* * **
9395527 AACTTAAA-ATAAATTTAAATTTAAA
1 AATTTAAATTTAAAAATAAATTTAAA
9395552 ATAAATTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 12 0.21
41 40 0.70
42 5 0.09
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (41 bp):
AATTTAAATTTAAAAATAAATTTAAACTTAAAATAAATTTA
Found at i:9395519 original size:58 final size:58
Alignment explanation
Indices: 9395428--9395551 Score: 182
Period size: 58 Copynumber: 2.1 Consensus size: 58
9395418 AGACATTATT
* *
9395428 AATTTAAATTTAGAATAATTTAAAATTTAAAAATAAATTTAAACTTAAATTAAATTTA
1 AATTTAAATTTAGAATAATTTAAAACTTAAAAATAAATTTAAACTTAAAATAAATTTA
9395486 AATTTAAATTTTTA-AATAAATTT-AAACTT-AAAATAAATTTAAACTTAAAATAAATTTA
1 AATTTAAA--TTTAGAAT-AATTTAAAACTTAAAAATAAATTTAAACTTAAAATAAATTTA
9395544 AATTTAAA
1 AATTTAAA
9395552 ATAAATTTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
58 44 0.72
59 8 0.13
60 9 0.15
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (58 bp):
AATTTAAATTTAGAATAATTTAAAACTTAAAAATAAATTTAAACTTAAAATAAATTTA
Found at i:9395564 original size:12 final size:12
Alignment explanation
Indices: 9395450--9395563 Score: 87
Period size: 11 Copynumber: 9.8 Consensus size: 12
9395440 GAATAATTTA
*
9395450 AAATTTAAAAAT
1 AAATTTAAAATT
*
9395462 AAATTTAAACTT
1 AAATTTAAAATT
*
9395474 AAA-TTAAATTT
1 AAATTTAAAATT
*
9395485 AAATTTAAATTTTT
1 AAATTTAAA--ATT
*
9395499 AAA--TAAATTT
1 AAATTTAAAATT
*
9395509 AAACTTAAAA-T
1 AAATTTAAAATT
*
9395520 AAATTTAAACTT
1 AAATTTAAAATT
* *
9395532 AAA-ATAAATTT
1 AAATTTAAAATT
9395543 AAATTTAAAA-T
1 AAATTTAAAATT
9395554 AAATTTAAAA
1 AAATTTAAAA
9395564 AGAATGGTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
10 6 0.07
11 39 0.46
12 34 0.40
14 6 0.07
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
AAATTTAAAATT
Found at i:9400207 original size:40 final size:40
Alignment explanation
Indices: 9400152--9400242 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
9400142 TGTATTTCTT
*
9400152 TTTAAAATATTTCAATTGTAAATCTAGTGTTGACATAATG
1 TTTAAAATATTTCAATTGTAAATCTAGTGTTGACATAATA
9400192 TTTAAAATATTTCAATTGTAAATCTAGTGTTGACATAATA
1 TTTAAAATATTTCAATTGTAAATCTAGTGTTGACATAATA
9400232 TTTAAAATATT
1 TTTAAAATATT
9400243 CACCGTTTTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.44
Consensus pattern (40 bp):
TTTAAAATATTTCAATTGTAAATCTAGTGTTGACATAATA
Found at i:9408101 original size:18 final size:20
Alignment explanation
Indices: 9408056--9408098 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
9408046 TTTACATATA
9408056 AAAATAA-TA-ATGATATTT
1 AAAATAATTATATGATATTT
9408074 AAAATAATTATATGAT-TTT
1 AAAATAATTATATGATATTT
*
9408093 AGAATA
1 AAAATA
9408099 TTAGAAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 7 0.32
19 10 0.45
20 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (20 bp):
AAAATAATTATATGATATTT
Found at i:9413584 original size:24 final size:24
Alignment explanation
Indices: 9413523--9413587 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
9413513 TAGACTAATA
* * *
9413523 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTGAAATAAATAAAC
*
9413547 AGAGTTTAATTGAAATAAATAAAC
1 AGAGTTTAACTGAAATAAATAAAC
9413571 AGAGTTTAACTGAAATA
1 AGAGTTTAACTGAAATA
9413588 TTATTTCTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (24 bp):
AGAGTTTAACTGAAATAAATAAAC
Found at i:9417098 original size:18 final size:18
Alignment explanation
Indices: 9417075--9417112 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
9417065 TAATATAGTT
9417075 TTATTCG-GTTTATTCGAA
1 TTATTCGAG-TTATTCGAA
9417093 TTATTCGAGTTATTCGAA
1 TTATTCGAGTTATTCGAA
9417111 TT
1 TT
9417113 CGAAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.50
Consensus pattern (18 bp):
TTATTCGAGTTATTCGAA
Found at i:9420365 original size:40 final size:40
Alignment explanation
Indices: 9420273--9420366 Score: 98
Period size: 40 Copynumber: 2.4 Consensus size: 40
9420263 TGCAATCAAG
* * *
9420273 GTACCGTAGTGCAAACAGGAGCACGAATGTGCTACCAGGA
1 GTACCGTAGTGCTAACAGGACCACAAATGTGCTACCAGGA
* * * * * **
9420313 GCACCATGGTGCTAACATGACCACAAATTTGCTATTAGGA
1 GTACCGTAGTGCTAACAGGACCACAAATGTGCTACCAGGA
9420353 GTACCGTAGTGCTA
1 GTACCGTAGTGCTA
9420367 TTAGGAGCAC
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (40 bp):
GTACCGTAGTGCTAACAGGACCACAAATGTGCTACCAGGA
Found at i:9422790 original size:15 final size:16
Alignment explanation
Indices: 9422763--9422793 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
9422753 TGAACACGTG
9422763 TTCAATATTTTTATTT
1 TTCAATATTTTTATTT
9422779 TTCAAT-TTTTTATTT
1 TTCAATATTTTTATTT
9422794 AATAATGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTCAATATTTTTATTT
Found at i:9422851 original size:88 final size:88
Alignment explanation
Indices: 9422698--9422877 Score: 342
Period size: 88 Copynumber: 2.0 Consensus size: 88
9422688 TCCTTTTAAA
9422698 TTTTATTTAATAATGAGATGAATAGAGTGGTAGCAAACTTGTATTTTAATACTATTGAACACGTG
1 TTTTATTTAATAATGAGATGAATAGAGTGGTAGCAAACTTGTATTTTAATACTATTGAACACGTG
9422763 TTCAATATTTTTATTTTTCAATT
66 TTCAATATTTTTATTTTTCAATT
*
9422786 TTTTATTTAATAATGAGATGAATAGAGTGGTAGCAAACTTGTATTTTAATACTATTGAACGCGTG
1 TTTTATTTAATAATGAGATGAATAGAGTGGTAGCAAACTTGTATTTTAATACTATTGAACACGTG
*
9422851 TTCAATATTTTTATTTTTTAATT
66 TTCAATATTTTTATTTTTCAATT
9422874 TTTT
1 TTTT
9422878 TTATTTAAAG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.47
Consensus pattern (88 bp):
TTTTATTTAATAATGAGATGAATAGAGTGGTAGCAAACTTGTATTTTAATACTATTGAACACGTG
TTCAATATTTTTATTTTTCAATT
Found at i:9424259 original size:14 final size:15
Alignment explanation
Indices: 9424217--9424252 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
9424207 TTTAAAAAAT
*
9424217 AAAATAAATATTGTA
1 AAAATAAATATTTTA
9424232 AAAATAAATATTTTA
1 AAAATAAATATTTTA
9424247 AAAATA
1 AAAATA
9424253 TTATTTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AAAATAAATATTTTA
Found at i:9424798 original size:19 final size:19
Alignment explanation
Indices: 9424776--9424830 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
9424766 AAAGTATAAA
*
9424776 AATTATAAAAATATCATTT
1 AATTATTAAAATATCATTT
* * *
9424795 AATTTTTAAAATATTAATT
1 AATTATTAAAATATCATTT
*
9424814 AATTATTAAATTATCAT
1 AATTATTAAAATATCAT
9424831 ATATATGTCA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTATTAAAATATCATTT
Found at i:9425363 original size:20 final size:21
Alignment explanation
Indices: 9425340--9425394 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 21
9425330 AAAAATTACA
9425340 AAAAAATT-AAAATAATTT-TC
1 AAAAAATTCAAAAT-ATTTATC
*
9425360 -AAAAATTCAAAATATTTATT
1 AAAAAATTCAAAATATTTATC
9425380 AAAAAATTCTAAAAT
1 AAAAAATTC-AAAAT
9425395 TTCATAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 8 0.27
22 5 0.17
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAAATTCAAAATATTTATC
Found at i:9425365 original size:19 final size:21
Alignment explanation
Indices: 9425340--9425394 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
9425330 AAAAATTACA
9425340 AAAAAATT-AAAATAATT-TT
1 AAAAAATTCAAAATAATTATT
* *
9425359 CAAAAATTCAAAATATTTATT
1 AAAAAATTCAAAATAATTATT
9425380 AAAAAATTCTAAAAT
1 AAAAAATTC-AAAAT
9425395 TTCATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.23
20 8 0.27
21 10 0.33
22 5 0.17
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAAATTCAAAATAATTATT
Found at i:9425404 original size:21 final size:21
Alignment explanation
Indices: 9425360--9425404 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
9425350 AATAATTTTC
* *
9425360 AAAAATTCAAAATATTTATTA
1 AAAAATTCAAAATATTCATAA
9425381 AAAAATTCTAAAAT-TTCATAA
1 AAAAATTC-AAAATATTCATAA
9425402 AAA
1 AAA
9425405 TGATAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATTCAAAATATTCATAA
Found at i:9431405 original size:15 final size:15
Alignment explanation
Indices: 9431382--9431417 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9431372 AATTTTAAAG
*
9431382 AAAAATGGATATTGT
1 AAAAATGGATATTCT
*
9431397 AAAAGTGGATATTCT
1 AAAAATGGATATTCT
9431412 AAAAAT
1 AAAAAT
9431418 CTTGGTTTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.31
Consensus pattern (15 bp):
AAAAATGGATATTCT
Found at i:9437729 original size:5 final size:6
Alignment explanation
Indices: 9437711--9437735 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9437701 TCTTTGCTTC
9437711 AAGAAA AAGAAA AAGAAA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA A
9437736 CCCTTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:9444063 original size:23 final size:23
Alignment explanation
Indices: 9444024--9444126 Score: 97
Period size: 23 Copynumber: 4.5 Consensus size: 23
9444014 TTCACACTTC
9444024 GTGTGCTTACT-ATTTTGCACCT-T
1 GTGTGCTTACTGA-TTTGCA-CTGT
* *
9444047 GTGTGCTTACTGATTTGCGCTAT
1 GTGTGCTTACTGATTTGCACTGT
* * *
9444070 GTGCGCCTATTGA-TTGCACTGT
1 GTGTGCTTACTGATTTGCACTGT
*
9444092 GTGTGCCTACTGGA-TTGCACTGT
1 GTGTGCTTACT-GATTTGCACTGT
9444115 GTGTGCTTACTG
1 GTGTGCTTACTG
9444127 TTAAGTACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
22 19 0.28
23 48 0.71
24 1 0.01
ACGTcount: A:0.13, C:0.20, G:0.26, T:0.41
Consensus pattern (23 bp):
GTGTGCTTACTGATTTGCACTGT
Found at i:9447423 original size:2 final size:2
Alignment explanation
Indices: 9447416--9447453 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
9447406 ATGAATGTTG
9447416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9447454 CTGGGTGTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9448028 original size:23 final size:23
Alignment explanation
Indices: 9448015--9448084 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
9448005 TTCATTTAAC
*
9448015 TTAATCGAATATGTTCACGAACA
1 TTAAACGAATATGTTCACGAACA
9448038 TTAAACGAATATGTTCACGAACA
1 TTAAACGAATATGTTCACGAACA
** *
9448061 TATAATTGAACATGTTCACGAACA
1 T-TAAACGAATATGTTCACGAACA
9448085 ATATTAATGA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 23 0.55
24 19 0.45
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (23 bp):
TTAAACGAATATGTTCACGAACA
Found at i:9450614 original size:6 final size:6
Alignment explanation
Indices: 9450589--9450627 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
9450579 ACAATTCATA
* * *
9450589 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
9450628 ATTTTGATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:9457068 original size:58 final size:58
Alignment explanation
Indices: 9456985--9457135 Score: 148
Period size: 58 Copynumber: 2.6 Consensus size: 58
9456975 AAAAAGGTAA
* * * * *
9456985 TTTAAAC-TTCTGA-GGCAAAATGGTAATTTTGAAAAAATTTGGGGTTAAAAATAAA-AT
1 TTTAAACATTC-GAGGGTAAAATGGTAATTTTGAAAAAA-TCGAGATTAAAAACAAAGAT
* *
9457042 TTTAAACATTC-AGGGGTAAAATGGTAATTTTTGGAAAAATCGAGATTAAAAACAAAGTT
1 TTTAAACATTCGA-GGGTAAAATGGTAA-TTTTGAAAAAATCGAGATTAAAAACAAAGAT
** *
9457101 TTTGGACATTCGAGGGTAGAATGGTAATTTTGAAA
1 TTTAAACATTCGAGGGTAAAATGGTAATTTTGAAA
9457136 GTTTAGGGTC
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
56 1 0.01
57 7 0.09
58 35 0.45
59 33 0.43
60 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (58 bp):
TTTAAACATTCGAGGGTAAAATGGTAATTTTGAAAAAATCGAGATTAAAAACAAAGAT
Found at i:9457166 original size:29 final size:29
Alignment explanation
Indices: 9457128--9457259 Score: 115
Period size: 30 Copynumber: 4.4 Consensus size: 29
9457118 AGAATGGTAA
9457128 TTTTGAAAGTTTAGGGTCAAAAATAGAAT
1 TTTTGAAAGTTTAGGGTCAAAAATAGAAT
* * * *
9457157 TTTTGGAAGTTTTGGGGTGAAAAATGGAAT
1 TTTTGAAAG-TTTAGGGTCAAAAATAGAAT
* *
9457187 TTTTAAAAGTTTTAGGGGCAAAAAT-GTAAT
1 TTTTGAAAG-TTTAGGGTCAAAAATAG-AAT
* * *
9457217 TTTTGAAAGTTTTGAGGT-TAAAATATAAT
1 TTTTGAAAGTTTAG-GGTCAAAAATAGAAT
*
9457246 TTTTGGATAGTTTA
1 TTTT-GAAAGTTTA
9457260 AGAACCTTCA
Statistics
Matches: 82, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
29 25 0.30
30 57 0.70
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.40
Consensus pattern (29 bp):
TTTTGAAAGTTTAGGGTCAAAAATAGAAT
Found at i:9457187 original size:30 final size:30
Alignment explanation
Indices: 9457120--9457239 Score: 129
Period size: 30 Copynumber: 4.0 Consensus size: 30
9457110 TCGAGGGTAG
*
9457120 AATGGTAA-TTTTGAAAG-TTTAGGGTCAAA
1 AATGG-AATTTTTGAAAGTTTTGGGGTCAAA
* * *
9457149 AATAGAATTTTTGGAAGTTTTGGGGTGAAA
1 AATGGAATTTTTGAAAGTTTTGGGGTCAAA
*
9457179 AATGGAATTTTTAAAAGTTTTAGGGG-CAAA
1 AATGGAATTTTTGAAAGTTTT-GGGGTCAAA
* * *
9457209 AATGTAATTTTTGAAAGTTTTGAGGTTAAA
1 AATGGAATTTTTGAAAGTTTTGGGGTCAAA
9457239 A
1 A
9457240 TATAATTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
28 2 0.03
29 15 0.20
30 54 0.72
31 4 0.05
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.37
Consensus pattern (30 bp):
AATGGAATTTTTGAAAGTTTTGGGGTCAAA
Found at i:9457209 original size:60 final size:59
Alignment explanation
Indices: 9457120--9457239 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 59
9457110 TCGAGGGTAG
* * * *
9457120 AATGGTAATTTTGAAAGTTTAGGGTCAAAAATAG-AATTTTTGGAAGTTTTGGGGTGAAA
1 AATGGTAATTTTAAAAGTTTAGGGGCAAAAAT-GTAATTTTTGAAAGTTTTGAGGTGAAA
*
9457179 AATGG-AATTTTTAAAAGTTTTAGGGGCAAAAATGTAATTTTTGAAAGTTTTGAGGTTAAA
1 AATGGTAA-TTTTAAAAG-TTTAGGGGCAAAAATGTAATTTTTGAAAGTTTTGAGGTGAAA
9457239 A
1 A
9457240 TATAATTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
58 2 0.04
59 14 0.26
60 37 0.70
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.37
Consensus pattern (59 bp):
AATGGTAATTTTAAAAGTTTAGGGGCAAAAATGTAATTTTTGAAAGTTTTGAGGTGAAA
Found at i:9459164 original size:17 final size:17
Alignment explanation
Indices: 9459144--9459198 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
9459134 TAATTTTAAT
9459144 TTTAAATTTATAATAAA
1 TTTAAATTTATAATAAA
*
9459161 TTTAAATTT-TATGTAAA
1 TTTAAATTTATA-ATAAA
* *
9459178 TTTAAATTCAAAATAAA
1 TTTAAATTTATAATAAA
9459195 TTTA
1 TTTA
9459199 TATCCCATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.06
17 29 0.91
18 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTTAAATTTATAATAAA
Found at i:9460007 original size:200 final size:199
Alignment explanation
Indices: 9459598--9460137 Score: 654
Period size: 200 Copynumber: 2.7 Consensus size: 199
9459588 CTTCTCTATG
* * *
9459598 TCTCATTAGGAAGCTGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGG
1 TCTCATCAGGAAGCT-ACCACTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAG-TTG
* * * *
9459663 GGTTCGAAGATTTGCTAGCATTGAGCTTGGGTTTGATTTGGTCTTCTTCTCATTG--TCTCATCA
64 GGTTCGAAGATTTGCTCGCATTGAGC-T---TTT-AGTTGGTATACTTCT--TTGTATCTCATCA
* * * * * *
9459726 GGAAGATAACCGCACAACTTGTTTCAATTCGCTTCTCCGTGTCTCATCAAGAAGATGAATTTGGT
122 GGAAGATGACCGCACAACTTGTTTCAATTAGCTTCTCCATATCTCACCAAGAAGACGAATTTGGT
**
9459791 CCACTTCTCTGTA
187 CCACTTCTAAGTA
9459804 TCTCATCAGGAAGCTACCCACTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGTTGG
1 TCTCATCAGGAAGCTA-CCACTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGTTGG
*
9459869 GCTCGAAGATTTGCTCGCATTGAGCTTTTAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATG
65 GTTCGAAGATTTGCTCGCATTGAGCTTTTAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATG
* * * *
9459934 ACTGC-CTCACTTGTTTCAATTAGCTTCTCTATATCTCACCAGGAAGACGAATTTGGTCCACTTC
130 ACCGCAC-AACTTGTTTCAATTAGCTTCTCCATATCTCACCAAGAAGACGAATTTGGTCCACTTC
9459998 TAAGTA
194 TAAGTA
* * *
9460004 TCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGTTGG
1 TCTCATCAGGAAGCT-ACCACTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGTT-G
* * * **** * *
9460069 GGTTTGAAGGTTTGCTCACATTGAGCGCCGAGTTGGCATACTTCTCTGTATCTCATCAGGAAGAT
64 GGTTCGAAGATTTGCTCGCATTGAGCTTTTAGTTGGTATACTTCTTTGTATCTCATCAGGAAGAT
9460134 GACC
129 GACC
9460138 ATTGTATTGC
Statistics
Matches: 294, Mismatches: 34, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
198 3 0.01
199 1 0.00
200 142 0.48
201 63 0.21
204 1 0.00
205 27 0.09
206 57 0.19
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (199 bp):
TCTCATCAGGAAGCTACCACTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGTTGGG
TTCGAAGATTTGCTCGCATTGAGCTTTTAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATGA
CCGCACAACTTGTTTCAATTAGCTTCTCCATATCTCACCAAGAAGACGAATTTGGTCCACTTCTA
AGTA
Found at i:9460170 original size:115 final size:115
Alignment explanation
Indices: 9460001--9460482 Score: 766
Period size: 115 Copynumber: 4.2 Consensus size: 115
9459991 CCACTTCTAA
* * * * *
9460001 GTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGT
1 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
* * * *
9460066 TGGGGTTTGAAGGTTTGCTCACATTGAGCGCCGAGTTGGCATACTTCTCT
66 TGGGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATACTTCTCT
* *
9460116 GTATCTCATCAGGAAGATGACCATTGTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGGAAGC
1 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
* *
9460181 TGAGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATGCTTCTCT
66 TGGGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATACTTCTCT
9460231 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
1 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
* *
9460296 TGGGGTTCGTAGATTTGCTCGCATTGAGCGTCGAGTTGGCATATTTCTCT
66 TGGGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATACTTCTCT
* * * *
9460346 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACTTGCTTCTCAGTTTCTCATCAAGAAGT
1 GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
* * *
9460411 TGGGGTTCGAAAATTTGCTTGTATTGAGCGTCGAGTTGGCATACTTCTCT
66 TGGGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATACTTCTCT
9460461 GTATCTCATCAGGAAGATGACC
1 GTATCTCATCAGGAAGATGACC
9460483 GCCTCACTTG
Statistics
Matches: 339, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 339 1.00
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (115 bp):
GTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGC
TGGGGTTCGAAGATTTGCTCGCATTGAGCGTCGAGTTGGCATACTTCTCT
Found at i:9461276 original size:51 final size:51
Alignment explanation
Indices: 9460951--9461755 Score: 627
Period size: 49 Copynumber: 16.2 Consensus size: 51
9460941 CGACTTAAAC
* * * * *
9460951 CTTTCCCTTC-AAATCTTCATGGTACTAGATCTGTCGTCGCGG-CTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * *
9461000 CTTTCCCTTC-ATGTCTTCGTGGTACTGGATCCGCTG-T-CGTGACTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCG-GTCTTAGAT
* * *
9461049 CTTTCCCTTC-ATGTCTTCGTGGTACTGGATCCGCCGTCGCGG-CTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * * *
9461098 CTTTCCCTTC-ATGTCTTCGTGGTACTAGAT-TCGCTGTTAC-GACTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCT-GCCGTTGCGGTCTTAGAT
* * * * ** * *
9461147 CTTTCCCTTC-ATGTCTTCGAGGTA-TAAGGTTC-ACCGTTGC-GAATTAAAC
1 CTTTCCCTTCTATATCTTCGTGGTACT--GGATCTGCCGTTGCGGTCTTAGAT
* * * * * * * *
9461196 CTTAT-CCTT-TGTATCTTTGCGGTATTGGATCTACCGTCGCGGCCTTAAAT
1 CTT-TCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* *
9461246 CTTTCCCTTCTATATCTTTGTGGTACTGGATCTACCGTTGCGGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * * ** *
9461297 CTTTCCCTTATGTATCTTTGTGGTACTGGATCTACCGTTATGGTTTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* *
9461348 CTTTCCCTTCTAT-T-TTCGTGGTACTGGAT-TCGCCATTGTGGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCT-GCCGTTGCGGTCTTAGAT
* * * **
9461397 CTTTCCCTTCTGTATCTTTGTGGTACTAGATCTGCCGTCACGGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * **
9461448 CTTTTCCTTC--TGTCTTCGTGGTACTGGAT-TCGCCATTATGGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCT-GCCGTTGCGGTCTTAGAT
* ** * * * *
9461497 CTTTCCCTTTTGCATCTTTGTGGTACTAGATCTACCGTTGTGGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * *
9461548 TTTTCCCTTC--TATCTTCGTGGTACTGGATCCGCCGTCGCAGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* ** * **
9461597 CTTTCCCTTCTGTATCTTTATGGTATTGGATCTGCCGTTGTAGTCTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * *
9461648 CTTT-CCTTCTGTATCTTTGTGGTACTGGATCTGCCGTTGCGGTCTTAAAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
* * * ** * *
9461698 CTTTCCCTTCTGTATCTTTGTTGTACTGGATCCACTGTCGCGG-CTTAGAT
1 CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
*
9461748 CCTTCCCT
1 CTTTCCCT
9461756 GTCAAACCTA
Statistics
Matches: 626, Mismatches: 103, Indels: 53
0.80 0.13 0.07
Matches are distributed among these distances:
47 2 0.00
48 9 0.01
49 297 0.47
50 78 0.12
51 238 0.38
52 2 0.00
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.41
Consensus pattern (51 bp):
CTTTCCCTTCTATATCTTCGTGGTACTGGATCTGCCGTTGCGGTCTTAGAT
Found at i:9461412 original size:100 final size:100
Alignment explanation
Indices: 9460989--9461755 Score: 660
Period size: 100 Copynumber: 7.7 Consensus size: 100
9460979 ATCTGTCGTC
* ** * * *
9460989 GCGG-CTTAGATCTTTCCCTTCATG--TCTTCGTGGTACTGGATCCGCTGTCGT-GACTTAGATC
1 GCGGTCTTAGATCTTTCCCTTC-TGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATC
* *
9461050 TTTCCCTTC-ATGTCTTCGTGGTACTGGATCCGCCGTC
65 TTTCCCTTCTAT-T-TTCGTGGTACTGGATTCGCCGTT
* * ** *
9461087 GCGG-CTTAGATCTTTCCCTTCATG--TCTTCGTGGTACTAGAT-T-CGCTGTT-ACGACTTAGA
1 GCGGTCTTAGATCTTTCCCTTC-TGTATCTTTGTGGTACTGGATCTAC-C-GTTGTGGTCTTAGA
* *
9461146 TCTTTCCCTTC-ATGTCTTCGAGGTA-TAAGG-TTCACCGTT
63 TCTTTCCCTTCTAT-T-TTCGTGGTACT--GGATTCGCCGTT
** * * * * * * * *
9461185 GC-GAATTAAACCTTAT-CCTT-TGTATCTTTGCGGTATTGGATCTACCGTCGCGGCCTTAAATC
1 GCGGTCTTAGATCTT-TCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATC
* *
9461247 TTTCCCTTCTATATCTTTGTGGTACTGGA-TCTACCGTT
65 TTTCCCTTCTAT-T-TTCGTGGTACTGGATTC-GCCGTT
* * *
9461285 GCGGTCTTAGATCTTTCCCTTATGTATCTTTGTGGTACTGGATCTACCGTTATGGTTTTAGATCT
1 GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
*
9461350 TTCCCTTCTATTTTCGTGGTACTGGATTCGCCATT
66 TTCCCTTCTATTTTCGTGGTACTGGATTCGCCGTT
* * * ***
9461385 GTGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTAGATCTGCCGTCACGGTCTTAGATCT
1 GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
* * * *
9461450 TTTCCTTCTGTCTTCGTGGTACTGGATTCGCCATT
66 TTCCCTTCTATTTTCGTGGTACTGGATTCGCCGTT
** * * * *
9461485 ATGGTCTTAGATCTTTCCCTTTTGCATCTTTGTGGTACTAGATCTACCGTTGTGGTCTTAGATTT
1 GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
* * *
9461550 TTCCCTTCTATCTTCGTGGTACTGGATCCGCCGTC
66 TTCCCTTCTATTTTCGTGGTACTGGATTCGCCGTT
* * * * *
9461585 GCAGTCTTAGATCTTTCCCTTCTGTATCTTTATGGTATTGGATCTGCCGTTGTAGTCTTAGATCT
1 GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
9461650 TT-CCTTCTGTATCTTT-GTGGTACTGGA-TCTGCCGTT
66 TTCCCTTC--TAT-TTTCGTGGTACTGGATTC-GCCGTT
* * * * * * *
9461686 GCGGTCTTAAATCTTTCCCTTCTGTATCTTTGTTGTACTGGATCCACTGTCGCGG-CTTAGATCC
1 GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
9461750 TTCCCT
66 TTCCCT
9461756 GTCAAACCTA
Statistics
Matches: 556, Mismatches: 88, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
96 3 0.01
97 2 0.00
98 108 0.19
99 31 0.06
100 282 0.51
101 82 0.15
102 48 0.09
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (100 bp):
GCGGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCGTTGTGGTCTTAGATCT
TTCCCTTCTATTTTCGTGGTACTGGATTCGCCGTT
Found at i:9462672 original size:18 final size:18
Alignment explanation
Indices: 9462644--9462688 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 18
9462634 CGACCTCTCC
9462644 TTTTCTTTTCTT-TT-TT
1 TTTTCTTTTCTTCTTCTT
*
9462660 CTTT-TTTTCTTCTTCTT
1 TTTTCTTTTCTTCTTCTT
9462677 TTTTCTTTTCTT
1 TTTTCTTTTCTT
9462689 TTATTCATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 7 0.29
16 5 0.21
17 5 0.21
18 7 0.29
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCTTTTCTTCTTCTT
Found at i:9462677 original size:21 final size:20
Alignment explanation
Indices: 9462644--9462685 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
9462634 CGACCTCTCC
9462644 TTTTCTTTTCTTTTTTCTTT
1 TTTTCTTTTCTTTTTTCTTT
9462664 TTTTCTTCTTCTTTTTTCTTT
1 TTTTCTT-TTCTTTTTTCTTT
9462685 T
1 T
9462686 CTTTTATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTCTTTTCTTTTTTCTTT
Found at i:9462678 original size:13 final size:12
Alignment explanation
Indices: 9462644--9462690 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
9462634 CGACCTCTCC
9462644 TTTTCTTTTCTT
1 TTTTCTTTTCTT
9462656 TTTTCTTTT-TT
1 TTTTCTTTTCTT
*
9462667 TCTTC--TTCTT
1 TTTTCTTTTCTT
9462677 TTTTCTTTTCTT
1 TTTTCTTTTCTT
9462689 TT
1 TT
9462691 ATTCATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 2 0.07
10 6 0.20
11 6 0.20
12 16 0.53
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:9462687 original size:15 final size:15
Alignment explanation
Indices: 9462649--9462688 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
9462639 TCTCCTTTTC
9462649 TTTTCTTTT-TTCTT
1 TTTTCTTTTCTTCTT
*
9462663 TTTT-TCTTCTTCTT
1 TTTTCTTTTCTTCTT
9462677 TTTTCTTTTCTT
1 TTTTCTTTTCTT
9462689 TTATTCATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 3 0.14
14 13 0.59
15 6 0.27
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTCTTTTCTTCTT
Found at i:9463416 original size:170 final size:170
Alignment explanation
Indices: 9463134--9463471 Score: 649
Period size: 170 Copynumber: 2.0 Consensus size: 170
9463124 TAGGTCTCTA
*
9463134 CTATGAATACTTTTGATGCTCTTATTGGTCACCTTTAATGCCTCATTCACCTGTTTTTTCGATGT
1 CTATGAATACTTTTGATGCTCTTATTGGTCACCTTTAATGCCTCATTCACCTATTTTTTCGATGT
9463199 AGTGCTGGGTCGTGATATTTGTTCTTAAATTGGCTGCAGACTTTGCTCTCGTGCTATTGCTCAGA
66 AGTGCTGGGTCGTGATATTTGTTCTTAAATTGGCTGCAGACTTTGCTCTCGTGCTATTGCTCAGA
9463264 TTGAAGTCATTGTCGAGTATGATCCTTTCTTGGCATTCTG
131 TTGAAGTCATTGTCGAGTATGATCCTTTCTTGGCATTCTG
* *
9463304 CTATGAATACTTTTGATGCTCTTATTGGTCACCTTTAATGCCTCATTTACCTATTTTTTTGATGT
1 CTATGAATACTTTTGATGCTCTTATTGGTCACCTTTAATGCCTCATTCACCTATTTTTTCGATGT
9463369 AGTGCTGGGTCGTGATATTTGTTCTTAAATTGGCTGCAGACTTTGCTCTCGTGCTATTGCTCAGA
66 AGTGCTGGGTCGTGATATTTGTTCTTAAATTGGCTGCAGACTTTGCTCTCGTGCTATTGCTCAGA
9463434 TTGAAGTCATTGTCGAGTATGATCCTTTCTTGGCATTC
131 TTGAAGTCATTGTCGAGTATGATCCTTTCTTGGCATTC
9463472 CATACCGGTA
Statistics
Matches: 165, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
170 165 1.00
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (170 bp):
CTATGAATACTTTTGATGCTCTTATTGGTCACCTTTAATGCCTCATTCACCTATTTTTTCGATGT
AGTGCTGGGTCGTGATATTTGTTCTTAAATTGGCTGCAGACTTTGCTCTCGTGCTATTGCTCAGA
TTGAAGTCATTGTCGAGTATGATCCTTTCTTGGCATTCTG
Found at i:9463718 original size:10 final size:9
Alignment explanation
Indices: 9463700--9463743 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 9
9463690 CATTTTTTCC
9463700 TTTTTCTTT
1 TTTTTCTTT
9463709 TTTATTCTTT
1 TTT-TTCTTT
*
9463719 CTTTCTCTCTT
1 -TTTTTCT-TT
9463730 TTTTTCTTT
1 TTTTTCTTT
9463739 TTTTT
1 TTTTT
9463744 ATTTGGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 10 0.33
10 15 0.50
11 5 0.17
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:9463722 original size:20 final size:20
Alignment explanation
Indices: 9463699--9463743 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9463689 ACATTTTTTC
9463699 CTTTTTCT-TTTTTATTCTTT
1 CTTTTTCTCTTTTT-TTCTTT
*
9463719 CTTTCTCTCTTTTTTTCTTT
1 CTTTTTCTCTTTTTTTCTTT
9463739 -TTTTT
1 CTTTTT
9463744 ATTTGGTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 13 0.59
21 5 0.23
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (20 bp):
CTTTTTCTCTTTTTTTCTTT
Found at i:9467725 original size:96 final size:96
Alignment explanation
Indices: 9467551--9467732 Score: 237
Period size: 96 Copynumber: 1.9 Consensus size: 96
9467541 AAGGATGTTT
** *
9467551 GATTATCTTGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCACAAATTTTTATAACCGAAGA
1 GATTATCTTGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTGATAACCGAAGA
* *
9467616 TAAGGAAACATTGCCTTGATTAAGGGTATTC
66 TAAAGAAACATTGCCTCGATTAAGGGTATTC
*
9467647 GATTAT-TTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCGCAAAATTTTGA-AACTCGA
1 GATTATCTT-GATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCAC-AAATTTTGATAAC-CGA
*
9467710 A-ATAAA-AGAATATTGCCTCGATT
63 AGATAAAGA-AACATTGCCTCGATT
9467733 TTAAAGTTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
95 3 0.04
96 60 0.80
97 12 0.16
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (96 bp):
GATTATCTTGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTGATAACCGAAGA
TAAAGAAACATTGCCTCGATTAAGGGTATTC
Found at i:9467993 original size:29 final size:30
Alignment explanation
Indices: 9467961--9468049 Score: 71
Period size: 30 Copynumber: 3.0 Consensus size: 30
9467951 GGATACTTGG
*
9467961 GGGTAAAATGGTAATTTTGGAAAAATT-TA
1 GGGTAAAATGGTAATTTTGGAAAAATTCGA
* **
9467990 GGGTTAAAAAT-GAAATTTTGG--ATGTTCGA
1 GGG-T-AAAATGGTAATTTTGGAAAAATTCGA
*
9468019 GGGTAAAATGATAATTTTTGGAAAAA-TCGA
1 GGGTAAAATGGTAA-TTTTGGAAAAATTCGA
9468049 G
1 G
9468050 ATTAAAAATA
Statistics
Matches: 45, Mismatches: 8, Indels: 13
0.68 0.12 0.20
Matches are distributed among these distances:
27 5 0.11
28 6 0.13
29 13 0.29
30 15 0.33
31 6 0.13
ACGTcount: A:0.39, C:0.02, G:0.26, T:0.33
Consensus pattern (30 bp):
GGGTAAAATGGTAATTTTGGAAAAATTCGA
Done.