Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 33 of 193
Found at i:10333698 original size:13 final size:13
Alignment explanation
Indices: 10333680--10333705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10333670 AAGTGAATTT
10333680 GTAATTTTGTATA
1 GTAATTTTGTATA
10333693 GTAATTTTGTATA
1 GTAATTTTGTATA
10333706 ATAGATGACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GTAATTTTGTATA
Found at i:10342239 original size:2 final size:2
Alignment explanation
Indices: 10342232--10342268 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10342222 GGGAATCCAT
10342232 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
10342269 TGTGTGTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10343418 original size:3 final size:3
Alignment explanation
Indices: 10343404--10343447 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
10343394 GTTTCGTGAA
10343404 TAT TACT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10343448 TCAATTTCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10346852 original size:33 final size:33
Alignment explanation
Indices: 10346810--10346875 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
10346800 CTTTTACTTG
*
10346810 TTCGTTGCTTAATTGGATCTATCCCCAACAAGT
1 TTCGTTGCTTAATTGGATCTATCCACAACAAGT
10346843 TTCGTTGCTTAATTGGATCTATCCACAACAAGT
1 TTCGTTGCTTAATTGGATCTATCCACAACAAGT
10346876 GGTATCAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (33 bp):
TTCGTTGCTTAATTGGATCTATCCACAACAAGT
Found at i:10349265 original size:16 final size:17
Alignment explanation
Indices: 10349230--10349267 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
10349220 AATGAAATTT
10349230 TTTTTATTGATTTCTAA
1 TTTTTATTGATTTCTAA
10349247 TTTTTACTT-ATTTCT-A
1 TTTTTA-TTGATTTCTAA
10349263 TTTTT
1 TTTTT
10349268 CAAAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 12 0.60
18 2 0.10
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTTTATTGATTTCTAA
Found at i:10359149 original size:21 final size:21
Alignment explanation
Indices: 10359125--10359164 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
10359115 AGAAGCATGG
10359125 CTTGT-TTCGGTAGAAGTCTCA
1 CTTGTATT-GGTAGAAGTCTCA
10359146 CTTGTATTGGTAGAAGTCT
1 CTTGTATTGGTAGAAGTCT
10359165 GCCTTATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (21 bp):
CTTGTATTGGTAGAAGTCTCA
Found at i:10365097 original size:6 final size:6
Alignment explanation
Indices: 10365086--10365168 Score: 62
Period size: 6 Copynumber: 13.2 Consensus size: 6
10365076 CCACAAAAAA
* *
10365086 TATGTT TATGTT TATGTT TGTATT TAAT-TAAT TATGTT TATGTT TATGTT
1 TATGTT TATGTT TATGTT TATGTT T-ATGT--T TATGTT TATGTT TATGTT
* *
10365136 TAAT-TAAT TACGTT TATGCT TATGTT TATGTT T
1 T-ATGT--T TATGTT TATGTT TATGTT TATGTT T
10365169 GGGATATAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
6 50 0.81
7 6 0.10
8 6 0.10
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.61
Consensus pattern (6 bp):
TATGTT
Found at i:10365127 original size:26 final size:26
Alignment explanation
Indices: 10365091--10365163 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
10365081 AAAAATATGT
*
10365091 TTATGTTTATGTTTGTATTTAATTAA
1 TTATGTTTATGTTTATATTTAATTAA
*
10365117 TTATGTTTATGTTTATGTTTAATTAA
1 TTATGTTTATGTTTATATTTAATTAA
* * *
10365143 TTACGTTTATGCTTATGTTTA
1 TTATGTTTATGTTTATATTTA
10365164 TGTTTGGGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.60
Consensus pattern (26 bp):
TTATGTTTATGTTTATATTTAATTAA
Found at i:10365127 original size:32 final size:33
Alignment explanation
Indices: 10365086--10365169 Score: 111
Period size: 32 Copynumber: 2.6 Consensus size: 33
10365076 CCACAAAAAA
*
10365086 TATGTTTATGTTTATGTTTGTATTTAATTA-AT
1 TATGTTTATGTTTATGTTTGTAATTAATTACAT
*
10365118 TATGTTTATGTTTATG-TT-TAATTAATTACGTT
1 TATGTTTATGTTTATGTTTGTAATTAATTAC-AT
*
10365150 TATGCTTATGTTTATGTTTG
1 TATGTTTATGTTTATGTTTG
10365170 GGATATAGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 9 0.20
31 2 0.04
32 32 0.71
33 2 0.04
ACGTcount: A:0.23, C:0.02, G:0.14, T:0.61
Consensus pattern (33 bp):
TATGTTTATGTTTATGTTTGTAATTAATTACAT
Found at i:10365322 original size:6 final size:6
Alignment explanation
Indices: 10365311--10365416 Score: 81
Period size: 6 Copynumber: 17.0 Consensus size: 6
10365301 TTTATACCCC
* * * *
10365311 AAACAT AAACAT AAGCAT AAATAT AATTA-ATT AAATAC AAACAT AAACAT
1 AAACAT AAACAT AAACAT AAACAT AA--ACA-T AAACAT AAACAT AAACAT
* * *
10365361 AAAAAT AATTA-AT GAAATAT AAATAT AAACAT AAACAT AAACAT AAACAT
1 AAACAT AA--ACAT -AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT
10365411 AAACAT
1 AAACAT
10365417 GATTAATTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
6 71 0.85
7 6 0.07
8 7 0.08
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (6 bp):
AAACAT
Found at i:10365353 original size:32 final size:32
Alignment explanation
Indices: 10365317--10365400 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
10365307 CCCCAAACAT
* * *
10365317 AAACATAAGCATAAATATAATTAATTAAATAC
1 AAACATAAACATAAAAATAATTAATGAAATAC
*
10365349 AAACATAAACATAAAAATAATTAATGAAATAT
1 AAACATAAACATAAAAATAATTAATGAAATAC
* *
10365381 AAATATAAACATAAACATAA
1 AAACATAAACATAAAAATAA
10365401 ACATAAACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.64, C:0.08, G:0.02, T:0.25
Consensus pattern (32 bp):
AAACATAAACATAAAAATAATTAATGAAATAC
Found at i:10365361 original size:38 final size:38
Alignment explanation
Indices: 10365310--10365443 Score: 151
Period size: 38 Copynumber: 3.4 Consensus size: 38
10365300 TTTTATACCC
*
10365310 CAAACATAAACATAAGCATAAATATAATTAATTAAATA
1 CAAACATAAACATAAACATAAATATAATTAATTAAATA
* * *
10365348 CAAACATAAACATAAAAATAATTAATGAAATATAAATATAAACA
1 CAAACATAAACATAAACATAAAT-AT--AAT-T-AAT-TAAATA
* * *
10365392 TAAACATAAACATAAACATAAACATGATTAATTAAATA
1 CAAACATAAACATAAACATAAATATAATTAATTAAATA
10365430 CAAACATAAACATA
1 CAAACATAAACATA
10365444 TTTTTTTGCG
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
38 38 0.48
39 5 0.06
40 1 0.01
41 5 0.06
42 1 0.01
43 5 0.06
44 24 0.30
ACGTcount: A:0.63, C:0.11, G:0.02, T:0.24
Consensus pattern (38 bp):
CAAACATAAACATAAACATAAATATAATTAATTAAATA
Found at i:10365408 original size:50 final size:50
Alignment explanation
Indices: 10365349--10365443 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
10365339 AATTAAATAC
* *
10365349 AAACATAAACATAAAAATAATTAATGAAATATAAATATAAACATAAACAT
1 AAACATAAACATAAAAATAATTAATGAAATACAAACATAAACATAAACAT
* * *
10365399 AAACATAAACATAAACATGATTAATTAAATACAAACATAAACATA
1 AAACATAAACATAAAAATAATTAATGAAATACAAACATAAACATA
10365444 TTTTTTTGCG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.23
Consensus pattern (50 bp):
AAACATAAACATAAAAATAATTAATGAAATACAAACATAAACATAAACAT
Found at i:10365525 original size:27 final size:27
Alignment explanation
Indices: 10365458--10365533 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
10365448 TTTGCGGTGA
* * *
10365458 TGCCTGTTAGGTAGGCACCATTGGTGG
1 TGCCAGTTAGGTAGGCACCACTAGTGG
* *
10365485 TGCCTA-TCAAGTAGGCACCACTAGTGG
1 TGCC-AGTTAGGTAGGCACCACTAGTGG
10365512 TGCCAGTTAGGTAGGCACCACT
1 TGCCAGTTAGGTAGGCACCACT
10365534 CCTACAAGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (27 bp):
TGCCAGTTAGGTAGGCACCACTAGTGG
Found at i:10370130 original size:13 final size:13
Alignment explanation
Indices: 10370076--10370141 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 13
10370066 CTTAAATCAA
* *
10370076 ACTTTTCAAAAGT
1 ACTTTTTAAAAGC
*
10370089 ACTTCTTAAAAGC
1 ACTTTTTAAAAGC
* **
10370102 ATTTTTCTACCA-C
1 ACTTTT-TAAAAGC
10370115 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
*
10370128 ACTTCTTAAAAGC
1 ACTTTTTAAAAGC
10370141 A
1 A
10370142 ATGCTAAACC
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
12 3 0.08
13 34 0.85
14 3 0.08
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:10374270 original size:17 final size:17
Alignment explanation
Indices: 10374248--10374286 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
10374238 AGGTGGAGAA
*
10374248 CTTGTTCG-ATGAGAGTT
1 CTTGTTCGTA-GAGAATT
10374265 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
10374282 CTTGT
1 CTTGT
10374287 CAAGGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.18, C:0.13, G:0.26, T:0.44
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:10381972 original size:24 final size:24
Alignment explanation
Indices: 10381941--10381987 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
10381931 TTGATTTTGG
10381941 TTTTTAATTCATATATTTTCTTTA
1 TTTTTAATTCATATATTTTCTTTA
10381965 TTTTTAATTCATATATTTTCTTT
1 TTTTTAATTCATATATTTTCTTT
10381988 TAAACCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (24 bp):
TTTTTAATTCATATATTTTCTTTA
Found at i:10394600 original size:75 final size:76
Alignment explanation
Indices: 10394363--10395194 Score: 1371
Period size: 75 Copynumber: 11.0 Consensus size: 76
10394353 ATCAGACCGC
*
10394363 AGCAAGATCA-TTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATGACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10394427 ATTGAAGTAAG
66 ATTGAAGTAAG
10394438 AGCAACG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
1 AGCAA-GATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
10394502 AATTGAAGTAAG
65 AATTGAAGTAAG
*
10394514 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
*
10394578 ATTGAAGTAAA
66 ATTGAAGTAAG
10394589 AGCAACG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
1 AGCAA-GATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
10394653 AATTGAAGTAAG
65 AATTGAAGTAAG
10394665 AGCAATG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
1 AGCAA-GATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
10394729 AATTGAAGTAAG
65 AATTGAAGTAAG
*
10394741 AGCAAGATCATTTCCTATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10394805 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
10394816 AGCAAGATCATTTCCTATCCACTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTTTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10394880 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
10394891 AGCGAGATC-TTTGCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGTCTTTATCTCTGA
1 AGCAAGATCATTT-CCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
10394954 AATTGAAGTAAG
65 AATTGAAGTAAG
* *
10394966 AGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10395030 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
10395041 AGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10395106 ATTGAAGTAAG
66 ATTGAAGTAAG
* * * * * * *
10395117 AGCAAGATCGTTTCCCATCCTCTTAAAATTGAAGTAAAGTTGGATATCAAGTCTTTCTCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10395182 ATT-AGAGTAAG
66 ATTGA-AGTAAG
10395193 AG
1 AG
10395195 TTAGACAAAG
Statistics
Matches: 723, Mismatches: 24, Indels: 19
0.94 0.03 0.02
Matches are distributed among these distances:
74 3 0.00
75 366 0.51
76 354 0.49
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (76 bp):
AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
ATTGAAGTAAG
Found at i:10394637 original size:151 final size:152
Alignment explanation
Indices: 10394363--10395194 Score: 1371
Period size: 151 Copynumber: 5.5 Consensus size: 152
10394353 ATCAGACCGC
*
10394363 AGCAAGATCA-TTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATGACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10394427 ATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
66 ATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
10394492 TTATCTCTGAAATTGAAGTAAG
131 TTATCTCTGAAATTGAAGTAAG
*
10394514 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
*
10394578 ATTGAAGTAAAAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
66 ATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
10394643 TTATCTCTGAAATTGAAGTAAG
131 TTATCTCTGAAATTGAAGTAAG
10394665 AGCAATG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
1 AGCAA-GATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
*
10394729 AATTGAAGTAAGAGCAA-GATCATTTCCTATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGT
65 AATTGAAGTAAGAGCAACG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGT
10394792 CTTTATCTCTGAAATTGAAGTAAG
129 CTTTATCTCTGAAATTGAAGTAAG
* *
10394816 AGCAAGATCATTTCCTATCCACTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTTTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
* *
10394880 ATTGAAGTAAGAGCGA-GATC-TTTGCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGT
66 ATTGAAGTAAGAGCAACG-TCATTT-CCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGT
10394942 CTTTATCTCTGAAATTGAAGTAAG
129 CTTTATCTCTGAAATTGAAGTAAG
* *
10394966 AGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACGCGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
* *
10395030 ATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCT
66 ATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
10395095 TTATCTCTGAAATTGAAGTAAG
131 TTATCTCTGAAATTGAAGTAAG
* * * * * * *
10395117 AGCAAGATCGTTTCCCATCCTCTTAAAATTGAAGTAAAGTTGGATATCAAGTCTTTCTCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
10395182 ATT-AGAGTAAGAG
66 ATTGA-AGTAAGAG
10395195 TTAGACAAAG
Statistics
Matches: 642, Mismatches: 28, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
149 3 0.00
150 207 0.32
151 301 0.47
152 131 0.20
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (152 bp):
AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
ATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCT
TTATCTCTGAAATTGAAGTAAG
Found at i:10395106 original size:38 final size:37
Alignment explanation
Indices: 10394385--10395114 Score: 403
Period size: 38 Copynumber: 19.4 Consensus size: 37
10394375 CCTATCCTCT
*
10394385 TGAAATTGAAGTAGAGTTGGATGACACGTCTTTATCTC
1 TGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC
**
10394423 TGAAATTGAAGTA-A---GAGCA-ACGTCATTTCCTATCCTC
1 TGAAATTGAAGTAGAGTGGATAACACGTC--TT--TAT-CTC
10394460 TTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTC
1 -TGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC
* * ** *
10394499 TGAAATTGAAGTA-AGAGCA-AGATCATTTC-CTATCCTC
1 TGAAATTGAAGTAGAGTGGATA-A-CACGTCTTTAT-CTC
*
10394536 TTGAAATTGAAGTAGAGTGGATAACGCGTCTTTATCTC
1 -TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
*
10394574 TGAAATTGAAGTA-A----A-AGCAACGTCATTTCCTATCCTC
1 TGAAATTGAAGTAGAGTGGATAAC-ACGTC--TT--TAT-CTC
10394611 TTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTC
1 -TGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC
** ** ** *
10394650 TGAAATTGAAGTAAGAG-CAATGTCATTTC-CTATCCTC
1 TGAAATTGAAGT-AGAGTGGATAACACGTCTTTAT-CTC
10394687 TTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTC
1 -TGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC
* * ** * *
10394726 TGAAATTGAAGTA-AGAGCA-AGATCATTTC-CTATCCGC
1 TGAAATTGAAGTAGAGTGGATA-A-CACGTCTTTAT-CTC
10394763 TTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
1 -TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
* * ** * *
10394801 TGAAATTGAAGTA-AGAGCA-AGATCATTTC-CTATCCAC
1 TGAAATTGAAGTAGAGTGGATA-A-CACGTCTTTAT-CTC
*
10394838 TTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTT
1 -TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
* ** *
10394876 TGAAATTGAAGTAAGAGCGAGAT--C-TTTGC-CTATCCTC
1 TGAAATTGAAGT-AGAGTG-GATAACACGT-CTTTAT-CTC
*
10394913 TTGAAATTGAAGTAGAGTGGATAACGCGTCTTTATCTC
1 -TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
* * *
10394951 TGAAATTGAAGTA-AG-AG-CAACATCAT-TTCCTATCCTC
1 TGAAATTGAAGTAGAGTGGATAACA-CGTCTT--TAT-CTC
*
10394988 TTGAAATTGAAGTAGAGTGGATAACGCGTCTTTATCTC
1 -TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
* * *
10395026 TGAAATTGAAGTA-AG-AG-CAACATCAT-TTCCTATCCTC
1 TGAAATTGAAGTAGAGTGGATAACA-CGTCTT--TAT-CTC
*
10395063 TTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTC
1 -TGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC
10395102 TGAAATTGAAGTA
1 TGAAATTGAAGTA
10395115 AGAGCAAGAT
Statistics
Matches: 529, Mismatches: 82, Indels: 162
0.68 0.11 0.21
Matches are distributed among these distances:
31 2 0.00
32 10 0.02
33 3 0.01
34 14 0.03
35 9 0.02
36 47 0.09
37 122 0.23
38 209 0.40
39 62 0.12
40 18 0.03
41 7 0.01
42 10 0.02
43 3 0.01
44 11 0.02
45 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (37 bp):
TGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTC
Found at i:10395583 original size:6 final size:6
Alignment explanation
Indices: 10395565--10395639 Score: 54
Period size: 6 Copynumber: 13.0 Consensus size: 6
10395555 TTAAATTGAT
*
10395565 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTACCA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTA-AA
* *
10395611 --TAAA TTTAAA TTAAAA TTAAAA TTATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA
10395640 ACAAATTTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
4 7 0.12
5 4 0.07
6 39 0.70
7 6 0.11
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:10395583 original size:17 final size:17
Alignment explanation
Indices: 10395565--10395622 Score: 91
Period size: 17 Copynumber: 3.5 Consensus size: 17
10395555 TTAAATTGAT
10395565 TTTAAATTTAT-TTAAA
1 TTTAAATTTATCTTAAA
10395581 TTTAAATTTATCTTAAA
1 TTTAAATTTATCTTAAA
* *
10395598 TTTAAATTTACCATAAA
1 TTTAAATTTATCTTAAA
10395615 TTTAAATT
1 TTTAAATT
10395623 AAAATTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
16 11 0.28
17 28 0.72
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATCTTAAA
Found at i:10395631 original size:17 final size:17
Alignment explanation
Indices: 10395576--10395631 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
10395566 TTAAATTTAT
* **
10395576 TTAAATTTAAATTTATC
1 TTAAATTTAAATTAAAA
**
10395593 TTAAATTTAAATTTACCA
1 TTAAATTTAAA-TTAAAA
10395611 -TAAATTTAAATTAAAA
1 TTAAATTTAAATTAAAA
10395627 TTAAA
1 TTAAA
10395632 ATTATAAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
16 4 0.13
17 25 0.81
18 2 0.06
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAATTAAAA
Found at i:10396108 original size:28 final size:28
Alignment explanation
Indices: 10396070--10396124 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
10396060 AAAGGGTTAC
* *
10396070 AACCCTGTTCTCAAAATCAATATACAAT
1 AACCCTCTTCTCAAAATCAATACACAAT
* *
10396098 AACCCTCTTCTCGATATCAATACACAA
1 AACCCTCTTCTCAAAATCAATACACAA
10396125 GCCCTTTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.40, C:0.29, G:0.04, T:0.27
Consensus pattern (28 bp):
AACCCTCTTCTCAAAATCAATACACAAT
Found at i:10397446 original size:162 final size:161
Alignment explanation
Indices: 10397259--10397751 Score: 712
Period size: 162 Copynumber: 3.1 Consensus size: 161
10397249 GGTTTTCAAT
* *
10397259 TTAATCCTTTGACTGTTGGACTGCACCGGAGGCTGCCACGTGTCATTTTTTGGTTTATTTCTGCA
1 TTAATCCTTTGACTGTTTGACTGCACC-GAGGCTGCCACGTGTCATTTTTTGGTTTATTTATGCA
* *
10397324 TTTAGTCCTTTTTATTTTTAATTTGTTTTAACTTAATCCTCAAATCAACTTCTGCCTAATTACAA
65 TTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTGCTTAATTACAA
*
10397389 AATTGGCCCAAGATTTTTTCAAGATTTATAAA
130 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
* *
10397421 TTAATCTTTTGACTGTTTAACTGCACCAGAGG-TCGCCACGTGTCATTTTTTGGTTTATTTATGC
1 TTAATCCTTTGACTGTTTGACTGCACC-GAGGCT-GCCACGTGTCATTTTTTGGTTTATTTATGC
*
10397485 ATTTAGTCCTTTTTCTTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTGCTTAATTACA
64 ATTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTGCTTAATTACA
*
10397550 AAATTGGCCCAAAAATTTTTCAAGATTTATAAA
129 AAATTGGCCCAAGAATTTTTCAAGATTTATAAA
* * * *
10397583 TTAATCCTTTGACTGTTTGACT--A--G-GTC-GCCATGTGTCACTTTTTGGTTTATTTATGTAT
1 TTAATCCTTTGACTGTTTGACTGCACCGAGGCTGCCACGTGTCATTTTTTGGTTTATTTATGCAT
* * * * * *
10397642 CTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCTTTAAATCAACTTCTGCTTAATTACAAA
66 TTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTGCTTAATTACAAA
* *
10397707 ATTGGCCCGAGAATTTTTCAAGATTTACAAA
131 ATTGGCCCAAGAATTTTTCAAGATTTATAAA
*
10397738 TTCATCCTTTGACT
1 TTAATCCTTTGACT
10397752 TCTGGATGCC
Statistics
Matches: 302, Mismatches: 27, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
155 128 0.42
156 1 0.00
157 1 0.00
160 1 0.00
161 1 0.00
162 170 0.56
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (161 bp):
TTAATCCTTTGACTGTTTGACTGCACCGAGGCTGCCACGTGTCATTTTTTGGTTTATTTATGCAT
TTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTGCTTAATTACAAA
ATTGGCCCAAGAATTTTTCAAGATTTATAAA
Found at i:10397867 original size:29 final size:27
Alignment explanation
Indices: 10397825--10398098 Score: 212
Period size: 29 Copynumber: 9.5 Consensus size: 27
10397815 GAACTATCCA
10397825 AAAATTACCATTTTACCCCCGAACTTTCC
1 AAAATT-CCATTTTACCCCCGAA-TTTCC
* * * *
10397854 AAAATTCTATTTTTAACCTCGATTTTCCC
1 AAAATTCCA-TTTTACCCCCGAATTT-CC
10397883 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATT-CCATTTTACCCCCGAA-TTTCC
*
10397913 AAAATTCCATTTTAACCCCG-ATTTCACC
1 AAAATTCCATTTTACCCCCGAATTT--CC
*
10397941 AAAAATTACCATTTTACCCCCGAATTTTCT
1 -AAAATT-CCATTTTACCCCCGAA-TTTCC
* *
10397971 AAAATTCCATTTTAACCTCG-ATTTCACC
1 AAAATTCCATTTTACCCCCGAATTT--CC
*
10397999 AAAATTACCATTTTACCCCCAAACTTTCC
1 AAAATT-CCATTTTACCCCCGAA-TTTCC
* * *
10398028 AAAGTTCTATTTTTAACCCCG-ATTTCACC
1 AAAATTCCA-TTTTACCCCCGAATTT--CC
* *
10398057 AAAATCACCATTTTACCCCCAAATTTTCC
1 AAAAT-TCCATTTTACCCCCGAA-TTTCC
10398086 AAAATTCCATTTT
1 AAAATTCCATTTT
10398099 CGGCCTCGAT
Statistics
Matches: 196, Mismatches: 27, Indels: 45
0.73 0.10 0.17
Matches are distributed among these distances:
26 6 0.03
27 5 0.03
28 49 0.25
29 85 0.43
30 36 0.18
31 12 0.06
32 3 0.02
ACGTcount: A:0.32, C:0.30, G:0.03, T:0.35
Consensus pattern (27 bp):
AAAATTCCATTTTACCCCCGAATTTCC
Found at i:10397954 original size:58 final size:58
Alignment explanation
Indices: 10397822--10398129 Score: 442
Period size: 58 Copynumber: 5.3 Consensus size: 58
10397812 CCTGAACTAT
*
10397822 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCTCGATTTTC-
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCTCGA-TTTCA
*
10397881 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCTCGATTTCA
* *
10397939 CCAAAAATTACCATTTTACCCCCGAATTTTCTAAAATTCCATTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCTCGATTTCA
* * * *
10397997 CC-AAAATTACCATTTTACCCCCAAACTTTCCAAAGTTCTATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCTCGATTTCA
* * * **
10398055 CC-AAAATCACCATTTTACCCCCAAATTTTCCAAAATTCCATTTTCGGCCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTT-AACCTCGATTTCA
10398113 CCAAAAATTACCATTTT
1 CCAAAAATTACCATTTT
10398130 GCCCTCGTAA
Statistics
Matches: 226, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
57 41 0.18
58 132 0.58
59 53 0.23
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (58 bp):
CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCTCGATTTCA
Found at i:10398158 original size:116 final size:114
Alignment explanation
Indices: 10397822--10398165 Score: 435
Period size: 115 Copynumber: 3.0 Consensus size: 114
10397812 CCTGAACTAT
* *
10397822 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCTCGATTTTC-CCAAA
1 CCAAAAATTACCATTTTACCCCCGAATTTTCCAAAATTCCA-TTTTAACCTCGA-TTTCACCAAA
10397886 AATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTAACCCCGATTTCA
64 AATTACCATTTTA-CCCCGAAC-TTCCAAAATTCCATTTTAACCCCGATTTCA
*
10397939 CCAAAAATTACCATTTTACCCCCGAATTTTCTAAAATTCCATTTTAACCTCGATTTCACC-AAAA
1 CCAAAAATTACCATTTTACCCCCGAATTTTCCAAAATTCCATTTTAACCTCGATTTCACCAAAAA
* * *
10398003 TTACCATTTTACCCCCAAACTTTCCAAAGTTCTATTTTTAACCCCGATTTCA
66 TTACCATTTTA-CCCCGAAC-TTCCAAAATTCCA-TTTTAACCCCGATTTCA
* * **
10398055 CC-AAAATCACCATTTTACCCCCAAATTTTCCAAAATTCCATTTTCGGCCTCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCCGAATTTTCCAAAATTCCATTTT-AACCTCGATTTCACCAAAA
* * * *
10398119 ATTACCATTTTGCCCTCGTAA-GTCCAAAATTACCGTTTTACCCCCGA
65 ATTACCATTTTACCC-CG-AACTTCCAAAATT-CCATTTTAACCCCGA
10398166 GTATCAAAAA
Statistics
Matches: 202, Mismatches: 18, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
115 78 0.39
116 68 0.34
117 54 0.27
118 2 0.01
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (114 bp):
CCAAAAATTACCATTTTACCCCCGAATTTTCCAAAATTCCATTTTAACCTCGATTTCACCAAAAA
TTACCATTTTACCCCGAACTTCCAAAATTCCATTTTAACCCCGATTTCA
Found at i:10405544 original size:39 final size:38
Alignment explanation
Indices: 10405494--10405593 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 38
10405484 CGAATATAAT
* * *
10405494 AATTATAATTACCATAATTATAATAATGTTTGA-CAGAAA
1 AATTATAATTACAATAATTATAATAATATTCGATC-G-AA
* *
10405533 AATTACAATTACAATAATTATAATAATATTCGATCGTA
1 AATTATAATTACAATAATTATAATAATATTCGATCGAA
10405571 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
10405594 CAAGGATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
38 23 0.43
39 30 0.56
40 1 0.02
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTCGATCGAA
Found at i:10407972 original size:46 final size:46
Alignment explanation
Indices: 10407919--10408006 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
10407909 AAGCAAATTG
* ** * *
10407919 ATGATAACTACAATATTTTTCAAGTGCATAACTAGTATTACACCAC
1 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACACCAC
10407965 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACA
1 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACA
10408007 AATTAGTAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (46 bp):
ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACACCAC
Found at i:10410963 original size:10 final size:10
Alignment explanation
Indices: 10410948--10410975 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10410938 AGCCTAAATC
10410948 TTAAGATATA
1 TTAAGATATA
10410958 TTAAGATATA
1 TTAAGATATA
10410968 TTAAGATA
1 TTAAGATA
10410976 GTAAAGTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (10 bp):
TTAAGATATA
Found at i:10415583 original size:17 final size:17
Alignment explanation
Indices: 10415557--10415590 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10415547 TGTTTTATTT
10415557 TTTCACCTATAACAACA
1 TTTCACCTATAACAACA
* *
10415574 TTTCATCTATAATAACA
1 TTTCACCTATAACAACA
10415591 ATCATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTCACCTATAACAACA
Found at i:10415778 original size:20 final size:18
Alignment explanation
Indices: 10415740--10415797 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
10415730 TTTCAATTTT
*
10415740 ATAAAAATATTTTATTAA
1 ATAAAAATATTTTAATAA
10415758 ATAAAAATAATCTTTAATAA
1 ATAAAAAT-AT-TTTAATAA
*
10415778 ATAAAATTATATTT-ATAA
1 ATAAAAATAT-TTTAATAA
10415796 AT
1 AT
10415798 TTTATTAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.40
19 7 0.20
20 14 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAAAAATATTTTAATAA
Found at i:10420536 original size:24 final size:24
Alignment explanation
Indices: 10420509--10420566 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
10420499 AGCCCACACA
* *
10420509 AGCCTAGAATGGTTAGCTCTTACG
1 AGCCCAGAATGGTTAGCTATTACG
* *
10420533 AGCCCAAAATGGTTAGCTATTATG
1 AGCCCAGAATGGTTAGCTATTACG
10420557 AGCCCAGAAT
1 AGCCCAGAAT
10420567 CAGAATAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (24 bp):
AGCCCAGAATGGTTAGCTATTACG
Found at i:10420594 original size:27 final size:27
Alignment explanation
Indices: 10420555--10420624 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
10420545 TTAGCTATTA
*
10420555 TGAGCCCAGAATCAGAATAATGCTCTTT
1 TGAG-CCAGAATCAGAATAACGCTCTTT
10420583 TGAGCCAGAATCAGAATAACGCTCTTT
1 TGAGCCAGAATCAGAATAACGCTCTTT
*
10420610 CGAGCCAGAATCAGA
1 TGAGCCAGAATCAGA
10420625 TTACTCCTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (27 bp):
TGAGCCAGAATCAGAATAACGCTCTTT
Found at i:10423707 original size:18 final size:17
Alignment explanation
Indices: 10423681--10423737 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
10423671 TTGGTTTCAG
10423681 ATTTATTTTAAGTTTAA
1 ATTTATTTTAAGTTTAA
* *
10423698 ATTTGTTTTTAAATTTAA
1 ATTT-ATTTTAAGTTTAA
10423716 ATTTATTTTAAGTTTAA
1 ATTTATTTTAAGTTTAA
*
10423733 GTTTA
1 ATTTA
10423738 AATTTATTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 19 0.56
18 15 0.44
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
ATTTATTTTAAGTTTAA
Found at i:10423737 original size:23 final size:24
Alignment explanation
Indices: 10423705--10423762 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 24
10423695 TAAATTTGTT
*
10423705 TTTAAATTTAAATTTATT-TTAAG
1 TTTAAATTTAAATTTATTCTTAAA
*
10423728 TTTAAGTTTAAATTTATTCTTAAA
1 TTTAAATTTAAATTTATTCTTAAA
10423752 TTTAAATTTAA
1 TTTAAATTTAA
10423763 CCTAAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (24 bp):
TTTAAATTTAAATTTATTCTTAAA
Found at i:10423773 original size:18 final size:18
Alignment explanation
Indices: 10423734--10423776 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
10423724 TAAGTTTAAG
* *
10423734 TTTAAATTTATTCTTAAA
1 TTTAAATTTATACCTAAA
10423752 TTTAAATTTA-ACCTAAA
1 TTTAAATTTATACCTAAA
*
10423769 TTTTAATT
1 TTTAAATT
10423777 AATAATGTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTAAATTTATACCTAAA
Found at i:10423776 original size:6 final size:6
Alignment explanation
Indices: 10423705--10423762 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
10423695 TAAATTTGTT
* * * *
10423705 TTTAAA TTTAAA TTT-AT TTTAAG TTTAAG TTTAAA TTT-AT TCTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA
10423752 TTTAAA TTTAA
1 TTTAAA TTTAA
10423763 CCTAAATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 6 0.14
6 36 0.82
7 2 0.05
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:10425610 original size:30 final size:28
Alignment explanation
Indices: 10425576--10425893 Score: 226
Period size: 29 Copynumber: 10.9 Consensus size: 28
10425566 AGATGGTCCT
*
10425576 TAAACTCTTTAGAAATTACATTTTAAGCCC
1 TAAACT-TTTAAAAATTACATTTTAA-CCC
*
10425606 TAAACTTTTTAAAAATTACATTTTTACCCC
1 TAAAC-TTTTAAAAATTACA-TTTTAACCC
* ** * *
10425636 TGAACTTCCCAAAAATTATATTTTGACTCC
1 TAAACTT-TTAAAAATTACATTTTAAC-CC
* * *
10425666 TGAACTTTTCAAAAATTACATTTTGACCT
1 TAAACTTTT-AAAAATTACATTTTAACCC
* * *
10425695 TGAAATTTTTAAAAATTATATTTTGACCC
1 T-AAACTTTTAAAAATTACATTTTAACCC
* * * *
10425724 CAAACTTTTCAAAATTTCCATTTTTATCCC
1 TAAACTTTT-AAAAATTACA-TTTTAACCC
* ** * *
10425754 TTAACTTCCAAAAGTTACATTTTTACCCC
1 TAAACTTTTAAAAATTACA-TTTTAACCC
*
10425783 TAAACTCTTTAAAAATTACATTTTAAACC
1 TAAACT-TTTAAAAATTACATTTTAACCC
*
10425812 TAAATTTTCTAAAAATTACATTTTAACCC
1 TAAACTTT-TAAAAATTACATTTTAACCC
* *
10425841 TTAAATTTTTAAAAATT-CTATTTTTACCCC
1 -TAAACTTTTAAAAATTAC-A-TTTTAACCC
**
10425871 CGAACTTTTAAAAA-TACATTTTA
1 TAAACTTTTAAAAATTACATTTTA
10425894 GCCTCGAACT
Statistics
Matches: 232, Mismatches: 42, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
27 5 0.02
28 12 0.05
29 107 0.46
30 102 0.44
31 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.41
Consensus pattern (28 bp):
TAAACTTTTAAAAATTACATTTTAACCC
Found at i:10425703 original size:29 final size:29
Alignment explanation
Indices: 10425588--10425978 Score: 213
Period size: 29 Copynumber: 13.4 Consensus size: 29
10425578 AACTCTTTAG
* *
10425588 AAATTACATTTTAAGCCCTAAACTTTTTAA
1 AAATTACATTTTAACCCCTAAA-TTTTCAA
* * **
10425618 AAATTACATTTTTACCCCTGAACTTCCCAA
1 AAATTACATTTTAACCCCT-AAATTTTCAA
* * * *
10425648 AAATTATATTTTGACTCCTGAACTTTTCAA
1 AAATTACATTTTAACCCCT-AAATTTTCAA
* * *
10425678 AAATTACATTTTGA-CCTTGAAATTTTTAA
1 AAATTACATTTTAACCCCT-AAATTTTCAA
* *
10425707 AAATTATATTTTGACCCC-AAACTTTTCAA
1 AAATTACATTTTAACCCCTAAA-TTTTCAA
* * * * * * *
10425736 AATTTCCATTTTTATCCCTTAACTTCCAA
1 AAATTACATTTTAACCCCTAAATTTTCAA
* *
10425765 AAGTTACATTTTTACCCCTAAACTCTTT-AA
1 AAATTACATTTTAACCCCTAAA-T-TTTCAA
*
10425795 AAATTACATTTTAA-ACCTAAATTTTCTAA
1 AAATTACATTTTAACCCCTAAATTTTC-AA
* *
10425824 AAATTACATTTTAACCCTTAAATTTTTAA
1 AAATTACATTTTAACCCCTAAATTTTCAA
* * *
10425853 AAATT-CTATTTTTACCCCCGAACTTTT-AA
1 AAATTAC-A-TTTTAACCCCTAAATTTTCAA
* * * * *
10425882 AAA-TACATTTTAGCCTC-GAACTTCCAA
1 AAATTACATTTTAACCCCTAAATTTTCAA
* * ** * *
10425909 AAATTTCATTTTTACCCCCGAACTTCCAA
1 AAATTACATTTTAACCCCTAAATTTTCAA
* ** * * *
10425938 AAATCACATTTTTGCCCCCAAACTTCCAA
1 AAATTACATTTTAACCCCTAAATTTTCAA
10425967 AAATTACATTTT
1 AAATTACATTTT
10425979 GACCTTTAGC
Statistics
Matches: 288, Mismatches: 58, Indels: 31
0.76 0.15 0.08
Matches are distributed among these distances:
26 3 0.01
27 16 0.06
28 17 0.06
29 148 0.51
30 100 0.35
31 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39
Consensus pattern (29 bp):
AAATTACATTTTAACCCCTAAATTTTCAA
Found at i:10425920 original size:56 final size:58
Alignment explanation
Indices: 10425851--10425978 Score: 172
Period size: 56 Copynumber: 2.2 Consensus size: 58
10425841 TTAAATTTTT
** * *
10425851 AAAAA-TTCTATTTTTACCCCCGAACTTTTAAAAAT-ACATTTTAG-CCTCGAACTTCC
1 AAAAATTTC-ATTTTTACCCCCGAACTTCCAAAAATCACATTTTAGCCCCCAAACTTCC
*
10425907 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATCACATTTTTGCCCCCAAACTTCC
1 AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATCACATTTTAGCCCCCAAACTTCC
*
10425965 AAAAATTACATTTT
1 AAAAATTTCATTTT
10425979 GACCTTTAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
56 29 0.46
57 11 0.17
58 23 0.37
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.34
Consensus pattern (58 bp):
AAAAATTTCATTTTTACCCCCGAACTTCCAAAAATCACATTTTAGCCCCCAAACTTCC
Found at i:10426024 original size:58 final size:58
Alignment explanation
Indices: 10425966--10426124 Score: 155
Period size: 58 Copynumber: 2.8 Consensus size: 58
10425956 CAAACTTCCA
*** * * *
10425966 AAAATTACA-TTTTGACCTTTAGCTTTCTAAAAGTTACCATTTTACTCTCGGATGTCC
1 AAAATTACATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACTCTCGGATGTCC
* ** *
10426023 AAAATTACATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACTCTCGAACATCTA
1 AAAATTACATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACTCTCGGATGTC-C
* *
10426082 AAAATTACCA-TTTT-ACCCCCGAA-TATCCAAAAATTACTATTTT
1 AAAATTA-CATTTTTGA-CCCCGAACTTTCCAAAAATTACCATTTT
10426125 GATCCCTAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
57 9 0.10
58 57 0.66
59 18 0.21
60 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.36
Consensus pattern (58 bp):
AAAATTACATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACTCTCGGATGTCC
Found at i:10426026 original size:29 final size:29
Alignment explanation
Indices: 10425994--10426124 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 29
10425984 TTAGCTTTCT
* * * *
10425994 AAAAGTTACCATTTTACTCTCGGATGTCC
1 AAAAATTACCATTTTACTCCCGAATATCC
*
10426023 -AAAATTA-CATTTTTGAC-CCCGAACTTTCC
1 AAAAATTACCA-TTTT-ACTCCCGAA-TATCC
* * *
10426052 AAAAATTACCATTTTACTCTCGAACATCT
1 AAAAATTACCATTTTACTCCCGAATATCC
*
10426081 AAAAATTACCATTTTACCCCCGAATATCC
1 AAAAATTACCATTTTACTCCCGAATATCC
*
10426110 AAAAATTACTATTTT
1 AAAAATTACCATTTT
10426125 GATCCCTAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.02
28 14 0.17
29 49 0.59
30 16 0.19
31 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAAATTACCATTTTACTCCCGAATATCC
Found at i:10426082 original size:87 final size:88
Alignment explanation
Indices: 10425760--10426173 Score: 290
Period size: 87 Copynumber: 4.8 Consensus size: 88
10425750 TCCCTTAACT
* * * * *
10425760 TCCAAAAGTTACATTTTT-ACCCCTAAACTCTT-TAAAAATTACATTTTAAAC-CT-AAATTTTC
1 TCCAAAAATTACATTTTTGACCCC-AAACT-TTCCAAAAATTACATTTT--ACTCTCGAACTATC
*** *
10425821 TAAAAATTA-CATTTTAACCCTTAAATT
62 TAAAAATTACCATTTT-ACCCCCGAATA
** * * *
10425848 TTTAAAAATT-CTATTTTT-ACCCCCGAACTTT-TAAAAA-TACATTTTAGC-CTCGAACT-TCC
1 TCCAAAAATTAC-ATTTTTGA-CCCCAAACTTTCCAAAAATTACATTTTA-CTCTCGAACTATCT
*
10425907 AAAAATT-TCATTTTTACCCCCGAACT-
63 AAAAATTACCA-TTTTACCCCCGAA-TA
* * ** * *
10425933 TCCAAAAATCACATTTTTGCCCCCAAAC-TTCCAAAAATTACATTTTGAC-CTTTAGCTTTCTAA
1 TCCAAAAATTACATTTTTGACCCCAAACTTTCCAAAAATTACATTTT-ACTCTCGAACTATCTAA
* * * * *
10425996 AAGTTACCATTTTACTCTCGGATG
65 AAATTACCATTTTACCCCCGAATA
*
10426020 TCC-AAAATTACATTTTTGACCCCGAACTTTCCAAAAATTACCATTTTACTCTCGAAC-ATCTAA
1 TCCAAAAATTACATTTTTGACCCCAAACTTTCCAAAAATTA-CATTTTACTCTCGAACTATCTAA
10426083 AAATTACCATTTTACCCCCGAATA
65 AAATTACCATTTTACCCCCGAATA
* * *
10426107 TCCAAAAATTAC-TATTTTGATCCCTAAACTTTCC-AAAATTACATTTTTCATCTCGAACTCTCT
1 TCCAAAAATTACAT-TTTTGA-CCCCAAACTTTCCAAAAATTACATTTTAC-TCTCGAACTATCT
10426170 AAAA
63 AAAA
10426174 CTTCATTTTT
Statistics
Matches: 262, Mismatches: 41, Indels: 45
0.75 0.12 0.13
Matches are distributed among these distances:
84 3 0.01
85 45 0.17
86 53 0.20
87 80 0.31
88 59 0.23
89 22 0.08
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.36
Consensus pattern (88 bp):
TCCAAAAATTACATTTTTGACCCCAAACTTTCCAAAAATTACATTTTACTCTCGAACTATCTAAA
AATTACCATTTTACCCCCGAATA
Found at i:10426165 original size:29 final size:29
Alignment explanation
Indices: 10426020--10426183 Score: 88
Period size: 29 Copynumber: 5.6 Consensus size: 29
10426010 CTCTCGGATG
* * *
10426020 TCCAAAATTACATTTTTGACCCCGAACTT
1 TCCAAAATTACATTTTTCATCCCGAACTA
* *
10426049 TCCAAAAATTACCATTTTAC-TCTCGAAC-A
1 TCC-AAAATTA-CATTTTTCATCCCGAACTA
* * *
10426078 TCTAAAAATTACCATTTTAC-CCCCGAA-TA
1 TC-CAAAATTA-CATTTTTCATCCCGAACTA
* * *
10426107 TCCAAAAATTAC-TATTTTGATCCCTAAACTT
1 TCC-AAAATTACAT-TTTTCATCCC-GAACTA
* *
10426138 TCCAAAATTACATTTTTCATCTCGAACTC
1 TCCAAAATTACATTTTTCATCCCGAACTA
*
10426167 TCTAAAACTT-CATTTTT
1 TCCAAAA-TTACATTTTT
10426184 GACCCCAATT
Statistics
Matches: 105, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
27 1 0.01
28 4 0.04
29 56 0.53
30 33 0.31
31 11 0.10
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.37
Consensus pattern (29 bp):
TCCAAAATTACATTTTTCATCCCGAACTA
Found at i:10426308 original size:24 final size:24
Alignment explanation
Indices: 10426258--10426315 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
10426248 TTTTCATATT
*
10426258 TATTTTATTTTGATTCATAATTTG
1 TATTTTATTTTGACTCATAATTTG
* *
10426282 TATTTTATTTT-CCTCATATTTTCG
1 TATTTTATTTTGACTCATAATTT-G
10426306 TATATTTATT
1 TAT-TTTATT
10426316 CATTCTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.28
24 15 0.52
25 6 0.21
ACGTcount: A:0.22, C:0.09, G:0.05, T:0.64
Consensus pattern (24 bp):
TATTTTATTTTGACTCATAATTTG
Found at i:10427937 original size:84 final size:84
Alignment explanation
Indices: 10427796--10428153 Score: 527
Period size: 84 Copynumber: 4.2 Consensus size: 84
10427786 AGACTTGAAG
*
10427796 AAAGATTACACAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
1 AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
10427861 TCAAAGACATGTTCGAGAT
66 TCAAAGACATGTTCGAGAT
*
10427880 AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGAGGCACTTTCGACAAGC
1 AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
*
10427945 TCAGAGACATGTTCGAGAT
66 TCAAAGACATGTTCGAGAT
* *
10427964 AAAGATTACGCAAATTCTGATTAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
1 AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
* *
10428029 TCAGAGACATGTTTGAGAT
66 TCAAAGACATGTTCGAGAT
* * *
10428048 AAAGATTACGCAAATTCAAATCAAGATCCTTGAAAGGAATCAAGAGGCAAGTGAGGGGCATTTTC
1 AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGG-----A-A-GCAAGTGAGGGGCACTTTC
* **
10428113 GACAAGCTCCAAGACATGTTTAAGAT
59 GACAAGCTCAAAGACATGTTCGAGAT
*
10428139 AAAGATTATGCAAAT
1 AAAGATTACGCAAAT
10428154 GATGAAAAAG
Statistics
Matches: 251, Mismatches: 16, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
84 194 0.77
89 1 0.00
90 1 0.00
91 55 0.22
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (84 bp):
AAAGATTACGCAAATTCAGATCAAGATTCTTGAAAGGAAGCAAGTGAGGGGCACTTTCGACAAGC
TCAAAGACATGTTCGAGAT
Found at i:10431450 original size:26 final size:25
Alignment explanation
Indices: 10431411--10431485 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
10431401 TCAATGAAGA
10431411 AAAAATAAAT-AAAAAGAAAAGAAAG
1 AAAAA-AAATAAAAAAGAAAAGAAAG
*
10431436 AAAAAAGAATAAAAAAGAAACGAAAG
1 AAAAAA-AATAAAAAAGAAAAGAAAG
* *
10431462 -GAAAAAATAAAAAGGAAAAAGAAA
1 AAAAAAAATAAAAAAG-AAAAGAAA
10431486 ATAGAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.23
25 19 0.44
26 14 0.33
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (25 bp):
AAAAAAAATAAAAAAGAAAAGAAAG
Found at i:10431494 original size:14 final size:13
Alignment explanation
Indices: 10431432--10431495 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
10431422 AAAAGAAAAG
10431432 AAAGAAAAAAGAA
1 AAAGAAAAAAGAA
10431445 TAAA-AAAGAAACG-A
1 -AAAGAAA-AAA-GAA
* *
10431459 AAGGAAAAAATAA
1 AAAGAAAAAAGAA
*
10431472 AAAGGAAAAAGAA
1 AAAGAAAAAAGAA
10431485 AATAGAAAAAA
1 AA-AGAAAAAA
10431496 AGGAGAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 21 0.54
14 17 0.44
15 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (13 bp):
AAAGAAAAAAGAA
Found at i:10432516 original size:50 final size:50
Alignment explanation
Indices: 10432409--10432953 Score: 480
Period size: 50 Copynumber: 10.9 Consensus size: 50
10432399 TAGGTTTGAC
* * * *
10432409 AGGGAAAGGTTGA-GCTCGCAACGGTGAACCCGGTACC-ATGAAGATGTAA
1 AGGGAAAGGTTGAGGC-CGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * *
10432458 AAGGAAAGGTCGAGACCGCAACGGCGAACTCGATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
*
10432508 AGGGAAAGGTTGAGGCCACAACGGCGAACCC-AGTACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGA-TACCTAAGAAGATGTGA
* * * * *
10432558 TGAGAAAAGTTGAGGCCGCAATGGCGAACCC-AGTA-CTATGAAGA-GATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGA-TACCTAAGAAGATG-TGA
* * * * * *
10432607 CAGGG-GAGGATTGAGGTCGCAACGGCGAATCTGATACCTTAAAAAGATGTAA
1 -AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACC-TAAGAAGATGTGA
* * *
10432659 AGGGAAAGTTTAAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTGAA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTG-A
* *
10432710 AGGAAAAGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * * * * ** *
10432760 TGAGAAAGGTTGAGGCCGTAATGACAAACCAAATACC-ATGAAGA-GATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATG-TGA
* * * * *
10432809 CAGGG-GAGGATTGAGGCCGCAACGGTGAATCCGATACCTTAAAAAGATGTAA
1 -AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACC-TAAGAAGATGTGA
* * ** *
10432861 AAGGAAAGGTTGAGGCCTCAACGGTAAACCCGGTACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * *
10432911 AGGGAAAGATTGAGGCCACAACGGTGAACCCGATACCTTAGAA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAA
10432954 AACAAGTTGG
Statistics
Matches: 394, Mismatches: 83, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
48 2 0.01
49 55 0.14
50 214 0.54
51 101 0.26
52 20 0.05
53 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.15
Consensus pattern (50 bp):
AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
Found at i:10432756 original size:202 final size:201
Alignment explanation
Indices: 10432449--10432988 Score: 769
Period size: 202 Copynumber: 2.7 Consensus size: 201
10432439 CGGTACCATG
* * * *
10432449 AAGATGTAAAAGGAAAGGTCGAGACCGCAACGGCGAACTCGATACCTAAGAAGATGTGAAGGGAA
1 AAGATGTAAAAGGAAAGGTTGAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTGAAGGGAA
10432514 AGGTTGAGGCCACAACGGCGAACCC-AGTACCTAAGAAGATGTGATGAGAAAAGTTGAGGCCGCA
66 AGGTTGAGGCCACAACGGCGAACCCGA-TACCTAAGAAGATGTGATGAGAAAAGTTGAGGCCGCA
* * * * *
10432578 ATGGCGAACCCAGTACTATGAAGAGATGACAGGGGAGGATTGAGGTCGCAACGGCGAATCTGATA
130 ATGGCGAACCAAATACCATGAAGAGATGACAGGGGAGGATTGAGGCCGCAACGGCGAATCCGATA
10432643 CCTTAAA
195 CCTTAAA
* * * *
10432650 AAGATGTAAAGGGAAAGTTTAAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTGAAAGGAA
1 AAGATGTAAAAGGAAAGGTTGAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTG-AAGGGA
* *
10432715 AAGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGATGAGAAAGGTTGAGGCCGTA
65 AAGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGATGAGAAAAGTTGAGGCCGCA
* * *
10432780 ATGACAAACCAAATACCATGAAGAGATGACAGGGGAGGATTGAGGCCGCAACGGTGAATCCGATA
130 ATGGCGAACCAAATACCATGAAGAGATGACAGGGGAGGATTGAGGCCGCAACGGCGAATCCGATA
10432845 CCTTAAA
195 CCTTAAA
* * *
10432852 AAGATGTAAAAGGAAAGGTTGAGGCCTCAACGGTAAACCCGGTACCTAAGAAGATGTGAAGGGAA
1 AAGATGTAAAAGGAAAGGTTGAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTGAAGGGAA
* * * * *** * *
10432917 AGATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACAAGTTG-GAAAAGATTGAAGCCGCA
66 AGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGATGAGAAAAG-TTGAGGCCGCA
10432981 ATGGCGAA
130 ATGGCGAA
10432989 TCTTCTACGT
Statistics
Matches: 298, Mismatches: 38, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
200 5 0.02
201 110 0.37
202 182 0.61
203 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (201 bp):
AAGATGTAAAAGGAAAGGTTGAGGCCGCAACGGCAAACCCGATACCTAAGAAGATGTGAAGGGAA
AGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGATGAGAAAAGTTGAGGCCGCAA
TGGCGAACCAAATACCATGAAGAGATGACAGGGGAGGATTGAGGCCGCAACGGCGAATCCGATAC
CTTAAA
Found at i:10432947 original size:151 final size:146
Alignment explanation
Indices: 10432411--10432947 Score: 445
Period size: 151 Copynumber: 3.6 Consensus size: 146
10432401 GGTTTGACAG
* * * * * * *
10432411 GGAAAGGTTGA-GCTCGCAACGGTGAACCCGGTACC-ATGAAGATGTAAAAGGAAAGGTCGAGAC
1 GGAAAGGTTGAGGC-CGCAACGGCGAACCCGGTACCTAAGAAGATGTGAAGGGAAAGATTGAGGC
* * *
10432474 CGCAACGGCGAACTCGATACCTAAGAAGATG-TGAAGGGAAAGGTTGAGGCCACAACGGCGAACC
65 CGCAACGGCGAACCCGATACC-ATGAAGA-GATGAAGGG-AAGGTTGAGGCCGCAACGGCGAACC
* * *
10432538 CAGTACCTAAGAAGATGTGAT
127 GA-TACCTAAGAAGATGTAAA
* * * * * *
10432559 GAGAAAAGTTGAGGCCGCAATGGCGAACCCAGTA-CTATGAAGA-GATGACAGGGGAGGATTGAG
1 G-GAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATG-TGA-AGGGAAAGATTGAG
* * * * * * * * *
10432622 GTCGCAACGGCGAATCTGATACCTTAAAAAGATGTAAAGGGAAAGTTTAAGGCCGCAACGGCAAA
63 GCCGCAACGGCGAACCCGATACCATGAAGAGATG--AAGGG-AAGGTTGAGGCCGCAACGGCGAA
10432687 CCCGATACCTAAGAAGATGTGAAA
125 -CCGATACCTAAGAAGATGT-AAA
* * * * *
10432711 GGAAAAGGTTGAGGCCACAACGGCGAACCCGATACCTAAGAAGATGTGATGAGAAAGGTTGAGGC
1 GG-AAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGAAGGGAAAGATTGAGGC
* * * * ** * *
10432776 CGTAATGACAAACCAAATACCATGAAGAGATGACAGGGGAGGATTGAGGCCGCAACGGTGAATCC
65 CGCAACGGCGAACCCGATACCATGAAGAGATGA-AGGGAAGG-TTGAGGCCGCAACGGCGAA-CC
*
10432841 GATACCTTAAAAAGATGTAAAA
127 GATACC-TAAGAAGATGT-AAA
* **
10432863 GGAAAGGTTGAGGCCTCAACGGTAAACCCGGTACCTAAGAAGATGTGAAGGGAAAGATTGAGGCC
1 GGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGAAGGGAAAGATTGAGGCC
* *
10432928 ACAACGGTGAACCCGATACC
66 GCAACGGCGAACCCGATACC
10432948 TTAGAAAACA
Statistics
Matches: 302, Mismatches: 71, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
148 4 0.01
149 39 0.13
150 32 0.11
151 137 0.45
152 78 0.26
153 11 0.04
154 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.15
Consensus pattern (146 bp):
GGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGAAGGGAAAGATTGAGGCC
GCAACGGCGAACCCGATACCATGAAGAGATGAAGGGAAGGTTGAGGCCGCAACGGCGAACCGATA
CCTAAGAAGATGTAAA
Found at i:10432969 original size:50 final size:49
Alignment explanation
Indices: 10432817--10432973 Score: 136
Period size: 50 Copynumber: 3.1 Consensus size: 49
10432807 GACAGGGGAG
* * *
10432817 GATTGAGGCCGCAACGGTGAATCCGATACCTTA-AAAAGATGTAAAAGGAAA
1 GATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACATGT---AGGAAA
* * * * * * ** *
10432868 GGTTGAGGCCTCAACGGTAAACCCGGTACCTAAGAAGATGTGAAGGGAAA
1 GATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACATGTA-GGAAA
* *
10432918 GATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACAAGTTGGAAAA
1 GATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACATGTAGG-AAA
10432968 GATTGA
1 GATTGA
10432974 AGCCGCAATG
Statistics
Matches: 82, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
49 3 0.04
50 47 0.57
51 27 0.33
52 5 0.06
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.17
Consensus pattern (49 bp):
GATTGAGGCCACAACGGTGAACCCGATACCTTAGAAAACATGTAGGAAA
Found at i:10433205 original size:40 final size:40
Alignment explanation
Indices: 10433145--10433229 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
10433135 TCATTTAGTC
* *
10433145 TTTTACCCTTAATTAAGAAAGGCAG-ATCGAAGATTCCGAT
1 TTTTTCCCTTAATCAAGAAAGGCAGAAT-GAAGATTCCGAT
* *
10433185 TTTTTCCCTTAATCAAGAAAGGTAGAATGAAGATTTCGAT
1 TTTTTCCCTTAATCAAGAAAGGCAGAATGAAGATTCCGAT
*
10433225 CTTTT
1 TTTTT
10433230 ACCCCGAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 37 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (40 bp):
TTTTTCCCTTAATCAAGAAAGGCAGAATGAAGATTCCGAT
Found at i:10433323 original size:39 final size:40
Alignment explanation
Indices: 10433223--10433324 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 40
10433213 GAAGATTTCG
10433223 ATCTTTTACCCCGAGCCTA-GGGCAAATCACAGTCAGCCA
1 ATCTTTTACCCCGAGCCTAGGGGCAAATCACAGTCAGCCA
** *
10433262 ATCTTTTACCCTAAGCCT-GGGGCAAATCACCA-TTAGCCA
1 ATCTTTTACCCCGAGCCTAGGGGCAAATCA-CAGTCAGCCA
* *
10433301 ATCTCTTACCCCGAG-ATAGGGGCA
1 ATCTTTTACCCCGAGCCTAGGGGCA
10433325 GATAGCAACC
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.02
39 50 0.94
40 2 0.04
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (40 bp):
ATCTTTTACCCCGAGCCTAGGGGCAAATCACAGTCAGCCA
Found at i:10433917 original size:209 final size:209
Alignment explanation
Indices: 10433416--10435037 Score: 2107
Period size: 209 Copynumber: 7.8 Consensus size: 209
10433406 TGCAGTTATC
** **
10433416 CAAAACAAACGAGGCGGTTTTCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
* * * * *
10433481 GGCTCAATA-TGAGCAAATCTTTGAACCCCAACTTTCTGATGAGATATTGAGAAGCAGGTCGAAG
66 GGCTTAA-AGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAG
* ** * * * * * * * * * *
10433545 TAATAAAATGGTCAGCTCCCTGATGAGATACTGAGAACT-AGACCAAATTCGTCTTCCTAACGAG
130 CAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGA-ACCAGATCCGTCTTCTTGATGAG
*
10433609 ATACAGAGAAGCGGAT
194 ATACAGAGAAGTGGAT
** * * * * *
10433625 TGAAACAAGTGAGGCGGTCATCTTCCTAATGAGATACAGAGAAGTACACCAACTTAATGAAACCA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAA-CA
* * * * * * *
10433690 AGACATAAAGTGAGCGAATCTTCGAACCCTAGCTTCCTAATGAGATACTGAGAAGCAAGTTGAAG
65 AGGCTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAG
* *
10433755 CAATAAAGCGATTACCTTCCTGATGAGATACAAAGAAGTGAACCAGATCCGTCTTCTTGATGAGA
130 CAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGA
10433820 TACAGAGAAGTGGAT
195 TACAGAGAAGTGGAT
* *
10433835 CAAAATAA-TGAGGAGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAAC-A
* * *
10433899 AGGCTTAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGAAGCAGGTCAAAG
65 AGGCTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAG
*
10433964 CAATAAAGCGGTTACCTTCCTGATGAGATACAAAGAAGTGAACCAGATCCGTCTTCTTGATGAGA
130 CAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGA
10434029 TACAGAGAAGTGGAT
195 TACAGAGAAGTGGAT
* *
10434044 CAAAACAA-TGAGGCGATCATCTTCCTAATGAGATACTGAGAAGTAGACCAAATCAATGAAACCA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAA-CA
* * * *
10434108 A-G-TTCAAAGTGAGCAAATCTTCGAACCCTAGCTTTCTGATGAGATACTAAGAAGCAAGTCGAA
65 AGGCTT-AAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAA
*
10434171 GCAATAAAGCGGTTACCTTCCTGATGAGATATAGAGAAGTGAACCAGATCCGTCTTCTTGATGAG
129 GCAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAG
*
10434236 ACACAGAGAAGTGGAT
194 ATACAGAGAAGTGGAT
* * * *
10434252 CAAAATAAGTGATGG-GATCATCTTCCTAATAAGATACTGAGAAGTAGACCAAATCAATGAAACC
1 CAAAACAAGTGA-GGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAA-C
* *
10434316 AA-G-TTCAAAGTGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATACTAAGAAGCAGGTCGA
64 AAGGCTT-AAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGA
10434379 AGCAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGA
128 AGCAATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGA
10434444 G-TCACAGAGAAGTGGAT
193 GAT-ACAGAGAAGTGGAT
* * * *
10434461 CAAAATAAGTGATGCGATCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACTA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
* * * ** ** *
10434526 GGCTCAAAGTGAGCAAATCGTCGAACCCCAACTTCCTGATGAGATACTTCGAAGCAGGTTAAAGT
66 GGCTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
*
10434591 AATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGAC
131 AATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGAT
*
10434656 ATAGAGAAGTGGAT
196 ACAGAGAAGTGGAT
* *
10434670 CAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACCA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
* * * * * ** *
10434735 GGGTCAAAGTGAGCAAATCTTCGAACCCAAGCTTCCTGGTAAGATACTTCGAAGCAAGTCGAAGC
66 GGCTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
** * * * * * *
10434800 AATAAAAGTAGTTACCCTCTTGATAAGATACAGAGAAGTGAACCAGATCCGCCTTCCTAATGAGA
131 AAT-AAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGA
* *
10434865 CATAGAGAAGTGGAT
195 TACAGAGAAGTGGAT
* *
10434880 CAAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTAAGAAGTAGACCAAATCAATGAAACAA
1 CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
* * * * *
10434945 AG-TTCAATGTGAGCGAAA-CTTCAAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCAAA
66 GGCTT-AAAGTGAGC-AAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAA
** * *
10435008 GCAATAAAATGGTTATCTTCATGATGAGAT
129 GCAATAAAGCGGTTACCTTCCTGATGAGAT
10435038 TCAAAGACGA
Statistics
Matches: 1264, Mismatches: 133, Indels: 32
0.88 0.09 0.02
Matches are distributed among these distances:
207 2 0.00
208 141 0.11
209 812 0.64
210 305 0.24
211 4 0.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (209 bp):
CAAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACAA
GGCTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
AATAAAGCGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGAT
ACAGAGAAGTGGAT
Found at i:10436940 original size:30 final size:28
Alignment explanation
Indices: 10436897--10437611 Score: 305
Period size: 29 Copynumber: 24.5 Consensus size: 28
10436887 TAAACTCTCT
* *
10436897 AAAAATCAAATTTTCAACCCTAAATTTTCC
1 AAAAATTACATTTT-AACCCTAAA-TTTCC
* * * *
10436927 AAAAATTACATTTTTACCCCCGAACTTCCC
1 AAAAATTACA-TTTTA-ACCCTAAATTTCC
* * * * **
10436957 AAAAATTATACTTTGACTCCTGAACTTTTG
1 AAAAATTACATTTTAAC-CCT-AAATTTCC
* * * *
10436987 AAAAATTATATTTTGACCTTAAAATTTTC
1 AAAAATTACATTTTAACCCT-AAATTTCC
* *
10437016 -AAAATTACATTTAAACCCTTAAACTTTTC
1 AAAAATTACATTTTAACCC-TAAA-TTTCC
* * *
10437045 AAAAATTCCTTTTTAACCCCTAGACTTTCC
1 AAAAATTACATTTTAA-CCCTA-AATTTCC
* * **
10437075 AAAAATTACATTTTTACCCCAAAATTTTT
1 AAAAATTACA-TTTTAACCCTAAATTTCC
* **
10437104 AAGAATTACATTTTAACTCC-AAACTTTTT
1 AAAAATTACATTTTAAC-CCTAAA-TTTCC
**
10437133 AAAAATTACATTTTAACCCCTAAACTTTTT
1 AAAAATTACATTTTAA-CCCTAAA-TTTCC
* * * *
10437163 AAAAATTCCATTTTACCCCTAAACTTCA
1 AAAAATTACATTTTAACCCTAAATTTCC
** * *
10437191 AAAAATTACATTTTTGCCTTCAAACTCTT-T
1 AAAAATTACATTTTAACCCT-AAA-T-TTCC
* * *
10437221 AAAAATTACATTTTGACCTTGAAATTTCA
1 AAAAATTACATTTTAACCCT-AAATTTCC
* *
10437250 AAAAATTATATTTTAACCCTTAAACTTTTC
1 AAAAATTACATTTTAACCC-TAAA-TTTCC
* * *
10437280 AAAAATTTCATTTTTACCCCTAAACTTCC
1 AAAAATTACA-TTTTAACCCTAAATTTCC
* *
10437309 AAAAA-TACATTTTTACCCAAAACTTT-C
1 AAAAATTACATTTTAACCCTAAA-TTTCC
* ** * *
10437336 AAAAATTTCATTTTTGCCTTCAAACTTCC
1 AAAAATTACATTTTAACCCT-AAATTTCC
* * * *
10437365 AAAAATCACATTTTTACGCTCAAACTTCC
1 AAAAATTACATTTTAACCCT-AAATTTCC
* * **
10437394 AAAAATTACATTTTTGACCCCGAGCTTTCC
1 AAAAATTACA-TTTT-AACCCTAAATTTCC
** ** ** *
10437424 AAATGTTACCATTTTAACCCCGAACATCT
1 AAAAATTA-CATTTTAACCCTAAATTTCC
* *
10437453 AAAAATTACCATTTT-ACCCTCGAATGTCC
1 AAAAATTA-CATTTTAACCCT-AAATTTCC
* * *
10437482 -AAAATTACATTTTGACCTTGAACTTTCC
1 AAAAATTACATTTTAACCCT-AAATTTCC
* * **
10437510 AAAAATTATCATTTTACCCCCAAACATCC
1 AAAAATTA-CATTTTAACCCTAAATTTCC
* *
10437539 AAAAATTACCATTTT-ACCCTCGAATGTCC
1 AAAAATTA-CATTTTAACCCT-AAATTTCC
*
10437568 AAAAATTACGATTTTGATCCCTAAACTTTCC
1 AAAAATTAC-ATTTT-AACCCTAAA-TTTCC
10437599 -AAAATTACATTTT
1 AAAAATTACATTTT
10437612 CATCCCGAAC
Statistics
Matches: 525, Mismatches: 123, Indels: 75
0.73 0.17 0.10
Matches are distributed among these distances:
27 22 0.04
28 88 0.17
29 204 0.39
30 171 0.33
31 40 0.08
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (28 bp):
AAAAATTACATTTTAACCCTAAATTTCC
Found at i:10437048 original size:88 final size:88
Alignment explanation
Indices: 10436914--10437611 Score: 303
Period size: 88 Copynumber: 8.0 Consensus size: 88
10436904 AAATTTTCAA
* *** ** * * * *
10436914 CCCT-AAATTTTCCAAAAATTACATTTTTACCCCCGAACTTCCCAAAAATTATACTTTGACTCCT
1 CCCTAAAATTTT-C-AAAATTACATTTTAACCCTTAAACTTTTCAAAAATTACATTTTAACCCCT
** *
10436978 GAACTTTTGAAAAATTATATTTTGA-
64 GAACTTTCAAAAAATTACATTTT-AC
* * * *
10437003 CCTTAAAATTTTCAAAATTACATTTAAACCCTTAAACTTTTCAAAAATTCCTTTTTAACCCCT-A
1 CCCTAAAATTTTCAAAATTACATTTTAACCCTTAAACTTTTCAAAAATTACATTTTAACCCCTGA
*
10437067 GACTTTCCAAAAATTACATTTTTAC
66 -ACTTTCAAAAAATTACA-TTTTAC
* *
10437092 CCC-AAAATTTTTAAGAATTACATTTTAACTCC--AAACTTTTTAAAAATTACATTTTAACCCCT
1 CCCTAAAATTTTCAA-AATTACATTTTAAC-CCTTAAACTTTTCAAAAATTACATTTTAACCCCT
* ** *
10437154 AAACTTTTTAAAAATTCCATTTTAC
64 GAACTTTCAAAAAATTACATTTTAC
* *** ** * *
10437179 CCCTAAACTTCAAAAAATTACATTTT-TGCCTTCAAACTCTTT-AAAAATTACATTTTGA-CCTT
1 CCCTAAAATTTTCAAAATTACATTTTAACCCTT-AAACT-TTTCAAAAATTACATTTTAACCCCT
* *
10437241 GAAATTTCAAAAAATTATATTTTAAC
64 GAACTTTCAAAAAATTACATTTT-AC
* * * * * * * **
10437267 CCTTAAACTTTTCAAAAATTTCATTTTTACCCCTAAAC-TTCCAAAAA-TACATTTTTA-CCCAA
1 CCCTAAAATTTTC-AAAATTACATTTTAACCCTTAAACTTTTCAAAAATTACATTTTAACCCCTG
* **
10437329 AACTTTC-AAAAATTTCATTTTTG
65 AACTTTCAAAAAATTACATTTTAC
* * * * * * * * * *
10437352 CCTTCAAACTTCCAAAAATCACATTTTTACGCTCAAAC-TTCCAAAAATTACATTTTTGACCCC-
1 CCCTAAAATTTTC-AAAATTACATTTTAACCCTTAAACTTTTCAAAAATTACA-TTTTAACCCCT
* * **
10437415 GAGCTTTCCAAATGTTACCATTTTAAC
64 GAACTTTCAAAAAATTA-CATTTT-AC
* * * * ** * * * *
10437442 CCCGAACA-TCTAAAAATTACCATTTT-ACCCTCGAA--TGTCCAAAATTACATTTTGA-CCTTG
1 CCCTAAAATTTTCAAAATTA-CATTTTAACCCTTAAACTTTTCAAAAATTACATTTTAACCCCTG
*
10437502 AACTTTCCAAAAATTATCATTTTAC
65 AACTTTCAAAAAATTA-CATTTTAC
* * ** * * * *
10437527 CCCCAAACA--TCCAAAAATTACCATTTT-ACCCTCGAA-TGTCCAAAAATTACGATTTTGATCC
1 CCCTAAA-ATTTTC-AAAATTA-CATTTTAACCCTTAAACTTTTCAAAAATTAC-ATTTTAACCC
* *
10437588 CTAAACTTTC-CAAAATTACATTTT
62 CTGAACTTTCAAAAAATTACATTTT
10437612 CATCCCGAAC
Statistics
Matches: 475, Mismatches: 105, Indels: 60
0.74 0.16 0.09
Matches are distributed among these distances:
85 49 0.10
86 66 0.14
87 97 0.20
88 181 0.38
89 66 0.14
90 16 0.03
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.37
Consensus pattern (88 bp):
CCCTAAAATTTTCAAAATTACATTTTAACCCTTAAACTTTTCAAAAATTACATTTTAACCCCTGA
ACTTTCAAAAAATTACATTTTAC
Found at i:10437424 original size:115 final size:114
Alignment explanation
Indices: 10436884--10437557 Score: 410
Period size: 117 Copynumber: 5.8 Consensus size: 114
10436874 CCTAAAAGGT
* * *
10436884 CCTT-AAACTCTCTAAAAATCAAATTTTCAACCCT-AAATTTTCCAAAAATTACATTTTTACCCC
1 CCTTCAAACT-TCAAAAAATCACATTTT-AACCCTCAAACTTTCCAAAAATTACATTTTTACCCC
** * * * ** *
10436947 CGAACTTCCCAAAAATTATACTTTGACTCCTGAACTTTTGAAAAATTATATTTTGA
64 TAAACTT-CCAAAAA-TACATTTTTAC-CCAAAAC-TTT-AAAAATTACATTTTGA
* * * * * * *
10437003 CCTTAAAATTTTC--AAAATTACATTTAAACCCTTAAACTTTTCAAAAATT-CCTTTTTAACCCC
1 CCTTCAAA-CTTCAAAAAATCACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTT-ACCCC
* * *
10437065 TAGACTTTCCAAAAATTACATTTTTACCCCAAAATTTTTAAGAATTACATTTT-A
64 TAAAC-TTCCAAAAA-TACATTTTTA-CCCAAAA-CTTTAAAAATTACATTTTGA
* * ** * ** *
10437119 ACTCCAAACTTTTTAAAAATTACATTTTAACCC-CTAAACTTTTTAAAAATTCCA-TTTTACCCC
1 CCTTCAAAC-TTCAAAAAATCACATTTTAACCCTC-AAACTTTCCAAAAATTACATTTTTACCCC
* * *
10437182 TAAACTTCAAAAAATTACATTTTTGCCTTCAAACTCTTTAAAAATTACATTTTGA
64 TAAACTTCCAAAAA-TACATTTTTACC--CAAA-ACTTTAAAAATTACATTTTGA
* * * * * * *
10437237 CCTTGAAATTTCAAAAAATTATATTTTAACCCTTAAACTTTTCAAAAATTTCATTTTTACCCCTA
1 CCTTCAAACTTCAAAAAATCACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTTACCCCTA
*
10437302 AACTTCCAAAAATACATTTTTACCCAAAACTTTCAAAAATTTCATTTTTG-
66 AACTTCCAAAAATACATTTTTACCCAAAACTTT-AAAAATTACA-TTTTGA
* * *
10437352 CCTTCAAACTTCCAAAAATCACATTTTTACGCTCAAAC-TTCCAAAAATTACATTTTTGACCCC-
1 CCTTCAAACTTCAAAAAATCACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTT-ACCCCT
* * ** * ** *
10437415 GAGCTTTCCAAATGTTACCATTTTAACCCCGAACATCTAAAAATTACCATTTT-A
65 AAAC-TTCCAAA-AATA-CATTTTTACCCAAAAC-TTTAAAAATTA-CATTTTGA
* * * * * **
10437469 CCCTCGAA-TGTC-CAAAATTACATTTTGA-CCTTGAACTTTCCAAAAATTATCA-TTTTACCCC
1 CCTTCAAACT-TCAAAAAATCACATTTTAACCCTCAAACTTTCCAAAAATTA-CATTTTTACCCC
* *
10437530 CAAACATCCAAAAATTACCA-TTTTACCC
64 TAAACTTCCAAAAA-TA-CATTTTTACCC
10437558 TCGAATGTCC
Statistics
Matches: 443, Mismatches: 80, Indels: 69
0.75 0.14 0.12
Matches are distributed among these distances:
114 30 0.07
115 78 0.18
116 65 0.15
117 135 0.30
118 121 0.27
119 8 0.02
120 5 0.01
121 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (114 bp):
CCTTCAAACTTCAAAAAATCACATTTTAACCCTCAAACTTTCCAAAAATTACATTTTTACCCCTA
AACTTCCAAAAATACATTTTTACCCAAAACTTTAAAAATTACATTTTGA
Found at i:10437509 original size:86 final size:87
Alignment explanation
Indices: 10437133--10437611 Score: 340
Period size: 86 Copynumber: 5.5 Consensus size: 87
10437123 CAAACTTTTT
* * ** * *
10437133 AAAAATTACATTTTAACCCCTAAACTTTTTAAAAATT-CCATTTT-ACCCCTAAACTTCAAAAAA
1 AAAAATTACATTTTGA-CCCTGAACTTTCCAAAAATTACCATTTTAACCCC-AAACATCCAAAAA
* * * * **
10437196 TTA-CATTTTTGCCTTCAAACTCTTT
64 TTACCA-TTTTACCCTCGAA-TGTCC
* * * * * * *
10437221 AAAAATTACATTTTGACCTTGAAATTTCAAAAAATTA-TATTTTAACCCTTAAACTTTTCAAAAA
1 AAAAATTACATTTTGACCCTGAACTTTCCAAAAATTACCATTTTAACCC-CAAAC-ATCCAAAAA
* *
10437285 TT-TCATTTTTACCC-CTAAACT-TCC
64 TTACCA-TTTTACCCTC-GAA-TGTCC
* ** * ** * *
10437309 AAAAA-TACATTTTTACCCAAAACTTT-CAAAAATT-TCATTTTTGCCTTCAAACTTCCAAAAAT
1 AAAAATTACATTTTGACCCTGAACTTTCCAAAAATTACCATTTTAACC-CCAAACATCCAAAAAT
* * *
10437371 CA-CATTTTTACGCTCAAACT-TCC
65 TACCA-TTTTACCCTCGAA-TGTCC
* * ** * *
10437394 AAAAATTACATTTTTGACCCCGAGCTTTCCAAATGTTACCATTTTAACCCCGAACATCTAAAAAT
1 AAAAATTACA-TTTTGACCCTGAACTTTCCAAAAATTACCATTTTAACCCCAAACATCCAAAAAT
10437459 TACCATTTTACCCTCGAATGTCC
65 TACCATTTTACCCTCGAATGTCC
* * *
10437482 -AAAATTACATTTTGACCTTGAACTTTCCAAAAATTATCATTTTACCCCCAAACATCCAAAAATT
1 AAAAATTACATTTTGACCCTGAACTTTCCAAAAATTACCATTTTAACCCCAAACATCCAAAAATT
10437546 ACCATTTTACCCTCGAATGTCC
66 ACCATTTTACCCTCGAATGTCC
*
10437568 AAAAATTACGATTTTGATCCCTAAACTTTCC-AAAATTA-CATTTT
1 AAAAATTAC-ATTTTGA-CCCTGAACTTTCCAAAAATTACCATTTT
10437612 CATCCCGAAC
Statistics
Matches: 317, Mismatches: 55, Indels: 39
0.77 0.13 0.09
Matches are distributed among these distances:
85 32 0.10
86 91 0.29
87 73 0.23
88 77 0.24
89 44 0.14
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.36
Consensus pattern (87 bp):
AAAAATTACATTTTGACCCTGAACTTTCCAAAAATTACCATTTTAACCCCAAACATCCAAAAATT
ACCATTTTACCCTCGAATGTCC
Found at i:10437779 original size:26 final size:23
Alignment explanation
Indices: 10437717--10437780 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
10437707 TTTTCATATT
**
10437717 TATTTTATTTTGATTCATAATTTG
1 TATTTTATTTT-CCTCATAATTTG
*
10437741 TATTTTATTTTCCTCATATTTTCG
1 TATTTTATTTTCCTCATAATTT-G
10437765 TATATTTATTCTTCCT
1 TAT-TTTATT-TTCCT
10437781 TATGTTATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 8 0.24
24 15 0.44
25 6 0.18
26 5 0.15
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.62
Consensus pattern (23 bp):
TATTTTATTTTCCTCATAATTTG
Found at i:10438062 original size:97 final size:98
Alignment explanation
Indices: 10437891--10438067 Score: 277
Period size: 97 Copynumber: 1.8 Consensus size: 98
10437881 CAAAATATTT
* * * *
10437891 AAAATCGAGGTAATATTTCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGA
1 AAAATCGAGGCAATATTTCTTTATCTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGACGCAA
10437956 TTTTCCTTCAAATCGGGATAATCGAATACCCTC
66 TTTTCCTTCAAATCGGGATAATCGAATACCCTC
* *
10437989 AAAA-CGAGGCAATGTTTCTTTATCTCTGGTTTTGAAAATTTGTGCCTTAACTTACTAGACGCAA
1 AAAATCGAGGCAATATTTCTTTATCTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGACGCAA
10438053 CTTTT-CTTCAAATCG
66 -TTTTCCTTCAAATCG
10438068 AGATCATTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
97 64 0.89
98 8 0.11
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (98 bp):
AAAATCGAGGCAATATTTCTTTATCTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGACGCAA
TTTTCCTTCAAATCGGGATAATCGAATACCCTC
Found at i:10441970 original size:26 final size:26
Alignment explanation
Indices: 10441930--10441982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10441920 AAGGCTTGAG
*
10441930 GAGTAATCTGTTTCTAGCTCGAAAGA
1 GAGTAATCTGATTCTAGCTCGAAAGA
* *
10441956 GAGTTATCTGATTCTGGCTCGAAAGA
1 GAGTAATCTGATTCTAGCTCGAAAGA
10441982 G
1 G
10441983 CAAAACTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
GAGTAATCTGATTCTAGCTCGAAAGA
Found at i:10442035 original size:26 final size:26
Alignment explanation
Indices: 10442016--10442074 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
10442006 TAAGAGCATT
10442016 ATTCTGTCTAGGCTCGTAAGAGCTAA
1 ATTCTGTCTAGGCTCGTAAGAGCTAA
*
10442042 ATTCTGTCTGGGCTCGTAAGAGCTAA
1 ATTCTGTCTAGGCTCGTAAGAGCTAA
*
10442068 ACTCTGT
1 ATTCTGT
10442075 TTTGGACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (26 bp):
ATTCTGTCTAGGCTCGTAAGAGCTAA
Found at i:10446990 original size:12 final size:12
Alignment explanation
Indices: 10446973--10447005 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
10446963 CAAAGCAATT
10446973 GTAGTTTTCAAA
1 GTAGTTTTCAAA
10446985 GTAGTTTTCAAA
1 GTAGTTTTCAAA
*
10446997 GTAGCTTTC
1 GTAGTTTTC
10447006 CAACTAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (12 bp):
GTAGTTTTCAAA
Found at i:10453905 original size:6 final size:6
Alignment explanation
Indices: 10453891--10453927 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
10453881 ATTAGCATTA
10453891 ATAAGTT ATAATT ATAATT ATAATT ATAATT ATAATT
1 ATAA-TT ATAATT ATAATT ATAATT ATAATT ATAATT
10453928 TTATATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (6 bp):
ATAATT
Found at i:10460911 original size:3 final size:3
Alignment explanation
Indices: 10460903--10460937 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
10460893 ATAAATACTA
*
10460903 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10460938 AATGAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10461515 original size:39 final size:39
Alignment explanation
Indices: 10461461--10461537 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
10461451 AAAGATATCT
10461461 ATTCTTTAGTATGAATTAAATTGTAAATATATTAAATAC
1 ATTCTTTAGTATGAATTAAATTGTAAATATATTAAATAC
10461500 ATTCTTTAGTATGAATTAAATTGTAAATATATTAAATA
1 ATTCTTTAGTATGAATTAAATTGTAAATATATTAAATA
10461538 AATAATACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (39 bp):
ATTCTTTAGTATGAATTAAATTGTAAATATATTAAATAC
Found at i:10471052 original size:68 final size:68
Alignment explanation
Indices: 10470943--10471076 Score: 214
Period size: 68 Copynumber: 2.0 Consensus size: 68
10470933 TCAAACTTGT
* * *
10470943 ATATTATAAATTGTTGCAACAATAATAATGTCAGCGGTGATTAGATTTAATATTTTTTATTGTTT
1 ATATTATAAATTATTGCAACAATAATAATGTCAGCCGTGATTAGATTTAATATCTTTTATTGTTT
10471008 AAA
66 AAA
* * *
10471011 ATATTATAAATTATTGCAATAATAATGATGTCAGCCTTGATTAGATTTAATATCTTTTATTGTTT
1 ATATTATAAATTATTGCAACAATAATAATGTCAGCCGTGATTAGATTTAATATCTTTTATTGTTT
10471076 A
66 A
10471077 GAATTTAAGA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.46
Consensus pattern (68 bp):
ATATTATAAATTATTGCAACAATAATAATGTCAGCCGTGATTAGATTTAATATCTTTTATTGTTT
AAA
Found at i:10472066 original size:4 final size:4
Alignment explanation
Indices: 10472052--10472085 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
10472042 AGTCCATAAC
* *
10472052 ACAT GCAT ACAT ACAT ACAT GCAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC
10472086 TTCATTTTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.44, C:0.26, G:0.06, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:10472073 original size:16 final size:16
Alignment explanation
Indices: 10472052--10472085 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
10472042 AGTCCATAAC
10472052 ACATGCATACATACAT
1 ACATGCATACATACAT
10472068 ACATGCATACATACAT
1 ACATGCATACATACAT
10472084 AC
1 AC
10472086 TTCATTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.06, T:0.24
Consensus pattern (16 bp):
ACATGCATACATACAT
Found at i:10475943 original size:30 final size:30
Alignment explanation
Indices: 10475903--10475966 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
10475893 AATTTTAAAG
* **
10475903 AATTTAGGGATCAAAATTGAGGGTTTTGGAA
1 AATTTAGGGATCAAAATCGA-ACTTTTGGAA
*
10475934 AATTT-GGGATTAAAATCGAACTTTTGGAA
1 AATTTAGGGATCAAAATCGAACTTTTGGAA
10475963 AATT
1 AATT
10475967 CTAGTTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 12 0.41
30 12 0.41
31 5 0.17
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (30 bp):
AATTTAGGGATCAAAATCGAACTTTTGGAA
Found at i:10476112 original size:60 final size:60
Alignment explanation
Indices: 10476002--10476115 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
10475992 AATATGAGGG
*
10476002 CAAAATGGTAATTTTCGAATGTTCAAGGGCAAAATGATAATTTTTGGAAAAGTTCGCTAT
1 CAAAATGGTAATTTTCGAATGTTCAAGGGCAAAATGATAATTTTTAGAAAAGTTCGCTAT
** *
10476062 CAAAATGGTAATTTTTACGAA-GTTC-AGGAGTGAAATGGTAA-TTTTAGAAAAGTT
1 CAAAATGGTAA-TTTT-CGAATGTTCAAGG-GCAAAATGATAATTTTTAGAAAAGTT
10476116 TAAGGTTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
60 26 0.55
61 17 0.36
62 4 0.09
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (60 bp):
CAAAATGGTAATTTTCGAATGTTCAAGGGCAAAATGATAATTTTTAGAAAAGTTCGCTAT
Found at i:10476154 original size:28 final size:28
Alignment explanation
Indices: 10476122--10476200 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 28
10476112 AGTTTAAGGT
10476122 TAAAATATGATTTTTGGAAGCTCGAGGG
1 TAAAATATGATTTTTGGAAGCTCGAGGG
* * *
10476150 TAAAATAATAATTTTGGAGAAGTTCGAGGG
1 TAAAAT-ATGATTTTTG-GAAGCTCGAGGG
*
10476180 TAAAAATGTGATTTTTGGAAG
1 T-AAAATATGATTTTTGGAAG
10476201 TTTGGGGGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
28 6 0.14
29 12 0.29
30 19 0.45
31 5 0.12
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.33
Consensus pattern (28 bp):
TAAAATATGATTTTTGGAAGCTCGAGGG
Found at i:10476179 original size:30 final size:30
Alignment explanation
Indices: 10476063--10476347 Score: 163
Period size: 29 Copynumber: 9.8 Consensus size: 30
10476053 GTTCGCTATC
*
10476063 AAAATGGTAATTTTT-ACGAAGTTC-AGGAGT
1 AAAATAGTAATTTTTGA-GAAGTTCGAGG-GT
* * * * ** *
10476093 GAAATGGTAATTTTAGAAAAGTTTAAGGTT
1 AAAATAGTAATTTTTGAGAAGTTCGAGGGT
* *
10476123 AAAATA-TGATTTTTG-GAAGCTCGAGGGT
1 AAAATAGTAATTTTTGAGAAGTTCGAGGGT
* *
10476151 AAAATAATAATTTTGGAGAAGTTCGAGGGT
1 AAAATAGTAATTTTTGAGAAGTTCGAGGGT
* * *
10476181 AAAA-ATGTGATTTTTG-GAAGTTTGGGGGT
1 AAAATA-GTAATTTTTGAGAAGTTCGAGGGT
*
10476210 AAAA-ATGTAATTTTTGA-AAGTT-TAGGGT
1 AAAATA-GTAATTTTTGAGAAGTTCGAGGGT
* *
10476238 CAAAAT-GTAA-TTTTGAAGAAATTAGAGGGT
1 -AAAATAGTAATTTTTG-AGAAGTTCGAGGGT
* *
10476268 GAAAAT-GTAATTTTTGAGAATTTTGA-GGT
1 -AAAATAGTAATTTTTGAGAAGTTCGAGGGT
*
10476297 AAAAATA-TAATTTTGGA-AAGTTCGAGGGT
1 -AAAATAGTAATTTTTGAGAAGTTCGAGGGT
* *
10476326 CAAAA-CGTGATTTTTGA-AAGTT
1 -AAAATAGTAATTTTTGAGAAGTT
10476348 TAAGGACCTT
Statistics
Matches: 202, Mismatches: 38, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
27 5 0.02
28 29 0.14
29 91 0.45
30 68 0.34
31 9 0.04
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (30 bp):
AAAATAGTAATTTTTGAGAAGTTCGAGGGT
Found at i:10476193 original size:59 final size:57
Alignment explanation
Indices: 10476100--10476251 Score: 144
Period size: 59 Copynumber: 2.6 Consensus size: 57
10476090 AGTGAAATGG
* * * * *
10476100 TAATTTTAGAAAAGTTTAAGGTTAAAATATGATTTTTGGAAGCTCGAGGGT-AAAATAA
1 TAATTTT-GGAAAGTTGAGGGTAAAAATGTGATTTTTGGAAGCTCGAGGGTAAAAAT-A
* * * *
10476158 TAATTTTGGAGAAGTTCGAGGGTAAAAATGTGATTTTTGGAAGTTTGGGGGTAAAAATG
1 TAATTTTGGA-AAGTT-GAGGGTAAAAATGTGATTTTTGGAAGCTCGAGGGTAAAAATA
* * * *
10476217 TAATTTTTGAAAGTTTAGGGTCAAAATGTAATTTT
1 TAATTTTGGAAAGTTGAGGGTAAAAATGTGATTTT
10476252 GAAGAAATTA
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
57 19 0.24
58 17 0.22
59 37 0.47
60 5 0.06
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.37
Consensus pattern (57 bp):
TAATTTTGGAAAGTTGAGGGTAAAAATGTGATTTTTGGAAGCTCGAGGGTAAAAATA
Found at i:10476210 original size:29 final size:29
Alignment explanation
Indices: 10476131--10476348 Score: 176
Period size: 29 Copynumber: 7.5 Consensus size: 29
10476121 TTAAAATATG
* * *
10476131 ATTTTTGGAAGCTCGAGGGT-AAAATAATA
1 ATTTTTGGAAGTTTGAGGGTAAAAAT-GTA
* * *
10476160 ATTTTGGAGAAGTTCGAGGGTAAAAATGTG
1 ATTTTTG-GAAGTTTGAGGGTAAAAATGTA
*
10476190 ATTTTTGGAAGTTTGGGGGTAAAAATGTA
1 ATTTTTGGAAGTTTGAGGGTAAAAATGTA
* *
10476219 ATTTTTGAAAGTTT-AGGGTCAAAATGTA
1 ATTTTTGGAAGTTTGAGGGTAAAAATGTA
* * *
10476247 A-TTTTGAAGAAATTAGAGGGTGAAAATGTA
1 ATTTTTG--GAAGTTTGAGGGTAAAAATGTA
* *
10476277 ATTTTTGAGAATTTTGA-GGTAAAAATATA
1 ATTTTTG-GAAGTTTGAGGGTAAAAATGTA
* * * *
10476306 A-TTTTGGAAAGTTCGAGGGTCAAAACGTG
1 ATTTTTGG-AAGTTTGAGGGTAAAAATGTA
*
10476335 ATTTTTGAAAGTTT
1 ATTTTTGGAAGTTT
10476349 AAGGACCTTT
Statistics
Matches: 153, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
27 6 0.04
28 24 0.16
29 67 0.44
30 46 0.30
31 10 0.07
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
ATTTTTGGAAGTTTGAGGGTAAAAATGTA
Found at i:10476266 original size:87 final size:88
Alignment explanation
Indices: 10476118--10476339 Score: 236
Period size: 87 Copynumber: 2.5 Consensus size: 88
10476108 GAAAAGTTTA
* * * ** * * *
10476118 AGGTTAAAATATGATTTTTGG-AAGCTCGAGGGT-AAAATAATAATTTTGGAGAAGTTCGAGGGT
1 AGGTAAAAATAT-AATTTTGGAAAGTTCGAGGGTCAAAA-CGTAATTTTGAAGAAATTAGAGGGT
*
10476181 AAAAATGTGATTTTTG-GAAGTTTGG
64 AAAAATGTAATTTTTGAGAA-TTTGG
* * * * * *
10476206 GGGTAAAAATGTAATTTTTGAAAGTT-TAGGGTCAAAATGTAATTTTGAAGAAATTAGAGGGTGA
1 AGGTAAAAATATAATTTTGGAAAGTTCGAGGGTCAAAACGTAATTTTGAAGAAATTAGAGGGTAA
*
10476270 AAATGTAATTTTTGAGAATTTTG
66 AAATGTAATTTTTGAGAATTTGG
*
10476293 AGGTAAAAATATAATTTTGGAAAGTTCGAGGGTCAAAACGTGATTTT
1 AGGTAAAAATATAATTTTGGAAAGTTCGAGGGTCAAAACGTAATTTT
10476340 TGAAAGTTTA
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
87 72 0.66
88 37 0.34
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (88 bp):
AGGTAAAAATATAATTTTGGAAAGTTCGAGGGTCAAAACGTAATTTTGAAGAAATTAGAGGGTAA
AAATGTAATTTTTGAGAATTTGG
Found at i:10476280 original size:58 final size:58
Alignment explanation
Indices: 10476094--10476349 Score: 186
Period size: 58 Copynumber: 4.4 Consensus size: 58
10476084 TTCAGGAGTG
* * * * *
10476094 AAATGGTAATTTTAGAAAAGTTTA-AGGTTAAAATATGATTTTTGG-AAGCTCGAGGGT-A
1 AAAT-GTAATTTTTG-AAAGTTTAGAGGTAAAAATAT-AATTTTGGAAAGTTAGAGGGTAA
* * * * * * *
10476152 AAATAATAATTTTGGAGAAG-TTCGAGGGTAAAAATGTGATTTTTGG-AAGTTTGGGGGTAA
1 AAAT-GTAATTTTTGA-AAGTTTAGA-GGTAAAAATAT-AATTTTGGAAAGTTAGAGGGTAA
* * *
10476212 AAATGTAATTTTTGAAAGTTTAG-GGTCAAAATGTAATTTTGAAGAAA-TTAGAGGGTGA
1 AAATGTAATTTTTGAAAGTTTAGAGGTAAAAATATAATTTTG--GAAAGTTAGAGGGTAA
* * *
10476270 AAATGTAATTTTTGAGAA-TTTTGAGGTAAAAATATAATTTTGGAAAGTTCGAGGGTCA
1 AAATGTAATTTTTGA-AAGTTTAGAGGTAAAAATATAATTTTGGAAAGTTAGAGGGTAA
* *
10476328 AAACGTGATTTTTGAAAGTTTA
1 AAATGTAATTTTTGAAAGTTTA
10476350 AGGACCTTTT
Statistics
Matches: 161, Mismatches: 25, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
56 6 0.04
57 19 0.12
58 72 0.45
59 59 0.37
60 5 0.03
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.35
Consensus pattern (58 bp):
AAATGTAATTTTTGAAAGTTTAGAGGTAAAAATATAATTTTGGAAAGTTAGAGGGTAA
Found at i:10477396 original size:15 final size:16
Alignment explanation
Indices: 10477372--10477430 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 16
10477362 TTAAACTTCT
10477372 TTTA-TATTATT-TTA
1 TTTATTATTATTATTA
*
10477386 TTTATTATTATTAATA
1 TTTATTATTATTATTA
10477402 TTATACTTACTTATTATGTA
1 TT-TA-TTA-TTATTAT-TA
10477422 TTTATTATT
1 TTTATTATT
10477431 TAATGAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.11
15 7 0.19
16 4 0.11
17 4 0.11
18 6 0.16
19 8 0.22
20 4 0.11
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:10478654 original size:39 final size:38
Alignment explanation
Indices: 10478611--10479106 Score: 247
Period size: 39 Copynumber: 12.7 Consensus size: 38
10478601 GCTGATGGTG
* *
10478611 ATCTGCCCCAAGCTTGGGGTAAAAGATCGAATGGTTGTA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * *
10478650 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTAAAGG-TGA
1 ATCTGCCCCAAGCTCGGGGTAAAAGA-T--CGAATGGCTGA
* * * **
10478690 TTC-GCCCTAGGCTCGATGTAAAAGATCGAATGGCTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * * *
10478728 ATCTGCCCCAGGCTCGGGG-AAAGAGATTGACTGAAGGTGA
1 ATCTGCCCCAAGCTCGGGGTAAA-AGATCGAATG--GCTGA
* *
10478768 TTC-GCCCCAAGCTCGGGGTAAAAGATAGAATGGCTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * * * ** *
10478806 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGGTGAAGGTG-
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATG--GCTGA
* * * * * *
10478845 ATTTGTCTCATGCTCGGGGTAAAAGATCGAATGACAGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * * *
10478884 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGAAGGTG-
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATG--GCTGA
* * * *
10478923 ATCTGTCCCAGGCTCAGGGTAAAAGATCGAATAGCTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * * ** * *
10478962 ATCTACCTCAAGCTCGGAGTAAGGGATTAGCTAAAGG-TG-
1 ATCTGCCCCAAGCTCGGGGTAAAAGA-T--CGAATGGCTGA
* * * * *
10479001 ATCCGCCTCAGGCTCAGGGTAAAAGATCGAATGACTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTG-A
* * *
10479040 ATCTGCCCCAAGCTCGAGGTAAGAGATTGACTGATGG-TG-
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCGA---ATGGCTGA
*
10479079 ATCTGCCCCAAGCTCAGGGTAAAAGATC
1 ATCTGCCCCAAGCTCGGGGTAAAAGATC
10479107 AGATCTTCAA
Statistics
Matches: 333, Mismatches: 95, Indels: 58
0.69 0.20 0.12
Matches are distributed among these distances:
36 9 0.03
37 11 0.03
38 11 0.03
39 266 0.80
40 11 0.03
41 13 0.04
42 12 0.04
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (38 bp):
ATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGA
Found at i:10478689 original size:78 final size:78
Alignment explanation
Indices: 10478587--10479106 Score: 630
Period size: 78 Copynumber: 6.7 Consensus size: 78
10478577 CCTCATGATT
* * * *
10478587 GGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTTGGGGTAAAAGATCGAATGGTTGTAAT
1 GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAAT
10478652 CTGCCCCAAGCTC
66 CTGCCCCAAGCTC
* * * **
10478665 GGGGTAAGAGATTGGCTAAAGGTGAT-TCGCCCTAGGCTCGATGTAAAAGATCGAATGGCTGCAA
1 GGGGTAAGAGATTGGCTGAAGGTGATCT-GCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAA
*
10478729 TCTGCCCCAGGCTC
65 TCTGCCCCAAGCTC
* * *
10478743 GGGGAAAGAGATTGACTGAAGGTGAT-TCGCCCCAAGCTCGGGGTAAAAGATAGAATGGCTGCAA
1 GGGGTAAGAGATTGGCTGAAGGTGATCT-GCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAA
*
10478807 TCTGCCCCAGGCTC
65 TCTGCCCCAAGCTC
* * * * * * * *
10478821 AGGGTAAGAGATTGGGTGAAGGTGATTTGTCTCATGCTCGGGGTAAAAGATCGAATGACAGCAAT
1 GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAAT
10478886 CTGCCCCAAGCTC
66 CTGCCCCAAGCTC
* * * * *
10478899 GGGGTAAGAGATTGACTGAAGGTGATCTGTCCCAGGCTCAGGGTAAAAGATCGAATAGCTGCAAT
1 GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAAT
* *
10478964 CTACCTCAAGCTC
66 CTGCCCCAAGCTC
* * * * * * * * *
10478977 GGAGTAAGGGATTAGCTAAAGGTGATCCGCCTCAGGCTCAGGGTAAAAGATCGAATGACTGCAAT
1 GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAAT
10479042 CTGCCCCAAGCTC
66 CTGCCCCAAGCTC
* * * *
10479055 GAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCAGGGTAAAAGATC
1 GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATC
10479107 AGATCTTCAA
Statistics
Matches: 377, Mismatches: 63, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
77 1 0.00
78 375 0.99
79 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.21
Consensus pattern (78 bp):
GGGGTAAGAGATTGGCTGAAGGTGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAAT
CTGCCCCAAGCTC
Found at i:10478843 original size:156 final size:155
Alignment explanation
Indices: 10478587--10479106 Score: 695
Period size: 156 Copynumber: 3.3 Consensus size: 155
10478577 CCTCATGATT
* * ** * *
10478587 GGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTTGGGGTAAAAGATCGAATGGTTGTAAT
1 GGGGTAAGAGATTGACTGAAGGTGATCTGCCCCAAGCTCAGGGTAAAAGATCGAATGGCTGCAAT
*
10478652 CTGCCCCAAGCTCGGGGTAAGAGATTGGCTAAAGGTGATTCGCC-CTAGGCTCGATGTAAAAGAT
66 CTGCCCCAAGCTC-GGGTAAGAGATTGGCTAAAGGTGATTCGCCTC-AGGCTCGAGGTAAAAGAT
* *
10478716 CGAATGGCTGCAATCTGCCCCAGGCTC
129 CGAATGACTGCAATCTGCCCCAAGCTC
* * *
10478743 GGGGAAAGAGATTGACTGAAGGTGAT-TCGCCCCAAGCTCGGGGTAAAAGATAGAATGGCTGCAA
1 GGGGTAAGAGATTGACTGAAGGTGATCT-GCCCCAAGCTCAGGGTAAAAGATCGAATGGCTGCAA
* * * * * * *
10478807 TCTGCCCCAGGCTCAGGGTAAGAGATTGGGTGAAGGTGATTTGTCTCATGCTCGGGGTAAAAGAT
65 TCTGCCCCAAGCTC-GGGTAAGAGATTGGCTAAAGGTGATTCGCCTCAGGCTCGAGGTAAAAGAT
*
10478872 CGAATGACAGCAATCTGCCCCAAGCTC
129 CGAATGACTGCAATCTGCCCCAAGCTC
* * *
10478899 GGGGTAAGAGATTGACTGAAGGTGATCTGTCCCAGGCTCAGGGTAAAAGATCGAATAGCTGCAAT
1 GGGGTAAGAGATTGACTGAAGGTGATCTGCCCCAAGCTCAGGGTAAAAGATCGAATGGCTGCAAT
* * * * *
10478964 CTACCTCAAGCTCGGAGTAAGGGATTAGCTAAAGGTGATCCGCCTCAGGCTC-AGGGTAAAAGAT
66 CTGCCCCAAGCTCGG-GTAAGAGATTGGCTAAAGGTGATTCGCCTCAGGCTCGA-GGTAAAAGAT
10479028 CGAATGACTGCAATCTGCCCCAAGCTC
129 CGAATGACTGCAATCTGCCCCAAGCTC
* *
10479055 GAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCAGGGTAAAAGATC
1 GGGGTAAGAGATTGACTGAAGGTGATCTGCCCCAAGCTCAGGGTAAAAGATC
10479107 AGATCTTCAA
Statistics
Matches: 317, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
155 3 0.01
156 312 0.98
157 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.21
Consensus pattern (155 bp):
GGGGTAAGAGATTGACTGAAGGTGATCTGCCCCAAGCTCAGGGTAAAAGATCGAATGGCTGCAAT
CTGCCCCAAGCTCGGGTAAGAGATTGGCTAAAGGTGATTCGCCTCAGGCTCGAGGTAAAAGATCG
AATGACTGCAATCTGCCCCAAGCTC
Found at i:10481034 original size:21 final size:21
Alignment explanation
Indices: 10481010--10481058 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
10481000 AAAGGTCATG
10481010 ACATGAAGGTGTGATGGAGGT
1 ACATGAAGGTGTGATGGAGGT
10481031 ACATGAAGGTGTGATGGAGGT
1 ACATGAAGGTGTGATGGAGGT
10481052 ACATGAA
1 ACATGAA
10481059 TCTTGTCTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.22
Consensus pattern (21 bp):
ACATGAAGGTGTGATGGAGGT
Found at i:10483915 original size:6 final size:6
Alignment explanation
Indices: 10483890--10483928 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
10483880 ACAATTCATA
* * *
10483890 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
10483929 ATTTTGATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:10490564 original size:10 final size:10
Alignment explanation
Indices: 10490549--10490573 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10490539 GGTATAAAAC
10490549 AAAGAGACAA
1 AAAGAGACAA
10490559 AAAGAGACAA
1 AAAGAGACAA
10490569 AAAGA
1 AAAGA
10490574 ACACATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAGAGACAA
Found at i:10492547 original size:58 final size:57
Alignment explanation
Indices: 10492462--10492602 Score: 144
Period size: 58 Copynumber: 2.5 Consensus size: 57
10492452 TTCAAGGGTG
* * *
10492462 AAATGATAATTTTGGA-AATGTTAGGGGTTAGAATGTGATTTTTGGAAGCGTGAG-GGAA
1 AAATG-TAATTTTGGAGAA-GTTAGGGGTAAAAATGAGATTTTTGGAAGCGTG-GTGGAA
* ** *
10492520 AAATGTAATTTTGGAGAAGTTCAGGGGTAAAAATGAGATTTTTTGAAGTTTGGTGGCA
1 AAATGTAATTTTGGAGAAGTT-AGGGGTAAAAATGAGATTTTTGGAAGCGTGGTGGAA
* *
10492578 AAATGTAATTTTTG-GAAGTTTGGGG
1 AAATGTAATTTTGGAGAAGTTAGGGG
10492603 GAAACATGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
56 4 0.06
57 20 0.28
58 47 0.66
ACGTcount: A:0.32, C:0.02, G:0.31, T:0.35
Consensus pattern (57 bp):
AAATGTAATTTTGGAGAAGTTAGGGGTAAAAATGAGATTTTTGGAAGCGTGGTGGAA
Found at i:10492692 original size:29 final size:29
Alignment explanation
Indices: 10492593--10492698 Score: 81
Period size: 29 Copynumber: 3.6 Consensus size: 29
10492583 TAATTTTTGG
* * *
10492593 AAGTTTGGGGG-AAACATGTAATTTTGGAGA
1 AAGTTTGGGGGTAAAAATATAATTTT--AAA
* * * *
10492623 AA-TTTAGGGGTGAAAATTTAATTTTTAAG
1 AAGTTTGGGGGTAAAAATATAA-TTTTAAA
* *
10492652 AAGTTCGAGGGTAAAAATATAATTTTAAA
1 AAGTTTGGGGGTAAAAATATAATTTTAAA
*
10492681 AAGTTTGGGGGTCAAAAT
1 AAGTTTGGGGGTAAAAAT
10492699 GTGATTTTTG
Statistics
Matches: 58, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
29 31 0.53
30 23 0.40
31 4 0.07
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.33
Consensus pattern (29 bp):
AAGTTTGGGGGTAAAAATATAATTTTAAA
Found at i:10492715 original size:59 final size:59
Alignment explanation
Indices: 10492519--10492720 Score: 143
Period size: 59 Copynumber: 3.5 Consensus size: 59
10492509 GCGTGAGGGA
* * * *
10492519 AAAATGTAA-TTTTGGAGAAGTTCAGGGGTAAAAATGAGATTTTTTG---AAGTTTGGTGG-C
1 AAAATGTAATTTTTGGA-AAGTTC-GGGGGAAAAAT-ATA-ATTTTGAAAAAGTTTGGGGGTC
* * * * * *
10492577 AAAATGTAATTTTTGG-AAGTTTGGGGGAAACATGTAATTTTGGAGAAA-TTTAGGGGTG
1 AAAATGTAATTTTTGGAAAGTTCGGGGGAAAAATATAATTTT-GAAAAAGTTTGGGGGTC
* * *
10492635 AAAATTTAATTTTT-AAGAAGTTCGAGGGTAAAAATATAATTTT-AAAAAGTTTGGGGGTC
1 AAAATGTAATTTTTGGA-AAGTTCG-GGGGAAAAATATAATTTTGAAAAAGTTTGGGGGTC
* *
10492694 AAAATGTGATTTTTGGAAAGTTAGGGG
1 AAAATGTAATTTTTGGAAAGTTCGGGG
10492721 ACCTTTTGGG
Statistics
Matches: 111, Mismatches: 22, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
54 4 0.04
55 2 0.02
56 9 0.08
57 11 0.10
58 31 0.28
59 38 0.34
60 16 0.14
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (59 bp):
AAAATGTAATTTTTGGAAAGTTCGGGGGAAAAATATAATTTTGAAAAAGTTTGGGGGTC
Found at i:10492720 original size:29 final size:29
Alignment explanation
Indices: 10492343--10492720 Score: 172
Period size: 30 Copynumber: 12.9 Consensus size: 29
10492333 TTCGAGGTCG
* * * *
10492343 AAAATGTGACTTTTGGAAATTTAAGGG-A
1 AAAATGTAATTTTTGGAAAGTTAGGGGTA
** * *
10492371 AAAATTGTAATTTTTTTAATGTTCGGGGGT-
1 AAAA-TGTAATTTTTGGAAAGTT-AGGGGTA
* *
10492401 AAAATGGTAATTTTTGGAAAAGTTTGGGGTC
1 AAAAT-GTAATTTTTGG-AAAGTTAGGGGTA
* * *
10492432 AAAATATAATTTTTACG-AAGTTCAAGGGT-
1 AAAATGTAATTTTT-GGAAAGTT-AGGGGTA
* *
10492461 GAAATGATAA-TTTTGGAAATGTTAGGGGTT
1 AAAATG-TAATTTTTGGAAA-GTTAGGGGTA
* * * *
10492491 AGAATGTGATTTTTGGAAGCGTGA-GGG-A
1 AAAATGTAATTTTTGGAA-AGTTAGGGGTA
10492519 AAAATGTAA-TTTTGGAGAAGTTCAGGGGTA
1 AAAATGTAATTTTTGGA-AAGTT-AGGGGTA
* * *
10492549 AAAATG-AGATTTTTTG-AAGTTTGGTGG-C
1 AAAATGTA-ATTTTTGGAAAGTTAGG-GGTA
* *
10492577 AAAATGTAATTTTTGG-AAGTTTGGGGGA
1 AAAATGTAATTTTTGGAAAGTTAGGGGTA
* * * *
10492605 AACATGTAATTTTGGAGAAATTTAGGGGTG
1 AAAATGTAATTTTTG-GAAAGTTAGGGGTA
* * *
10492635 AAAATTTAATTTTT-AAGAAGTTCGAGGGTA
1 AAAATGTAATTTTTGGA-AAGTTAG-GGGTA
* ** * *
10492665 AAAATATAA-TTTTAAAAAGTTTGGGGGTC
1 AAAATGTAATTTTTGGAAAG-TTAGGGGTA
*
10492694 AAAATGTGATTTTTGGAAAGTTAGGGG
1 AAAATGTAATTTTTGGAAAGTTAGGGG
10492721 ACCTTTTGGG
Statistics
Matches: 264, Mismatches: 56, Indels: 59
0.70 0.15 0.16
Matches are distributed among these distances:
27 11 0.04
28 51 0.19
29 80 0.30
30 106 0.40
31 16 0.06
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAAGTTAGGGGTA
Found at i:10493765 original size:20 final size:22
Alignment explanation
Indices: 10493731--10493774 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
10493721 GCCTTGATCA
*
10493731 TGTAATTTGAGCCATTG-AATT
1 TGTAATTTGAACCATTGTAATT
10493752 TGTAA-TTGAACCATTGTAATT
1 TGTAATTTGAACCATTGTAATT
10493773 TG
1 TG
10493775 GACATTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (22 bp):
TGTAATTTGAACCATTGTAATT
Found at i:10493851 original size:7 final size:7
Alignment explanation
Indices: 10493839--10493863 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10493829 AACTAAAAAT
10493839 AATTTAA
1 AATTTAA
10493846 AATTTAA
1 AATTTAA
10493853 AATTTAA
1 AATTTAA
10493860 AATT
1 AATT
10493864 GAGTTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:10496121 original size:62 final size:61
Alignment explanation
Indices: 10496007--10496124 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 61
10495997 CTAAGTGAAC
* **
10496007 AAATGAGGTTTTGGTTGAAAAAAAATGATAATTCCCATTCAAGTAAACAAATGAGGTGAGT
1 AAATGAGGTTTTGGTTAAAAAAAAATGATAATTCCCATTCAACCAAACAAATGAGGTGAGT
* * * *
10496068 AAATGCGGTTTTGGTTAAAAAAAGAATGATAATTCCTATTTAACCAAATAAATGAGG
1 AAATGAGGTTTTGGTTAAAAAAA-AATGATAATTCCCATTCAACCAAACAAATGAGG
10496125 CTTTAATTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
61 21 0.43
62 28 0.57
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.29
Consensus pattern (61 bp):
AAATGAGGTTTTGGTTAAAAAAAAATGATAATTCCCATTCAACCAAACAAATGAGGTGAGT
Found at i:10509727 original size:19 final size:20
Alignment explanation
Indices: 10509688--10509733 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
10509678 GCTCAAAGGT
10509688 ATCGATATTTTTCATCAAAA
1 ATCGATATTTTTCATCAAAA
*
10509708 ATCGATATTTTTCTTC-AAA
1 ATCGATATTTTTCATCAAAA
10509727 ATCGATA
1 ATCGATA
10509734 CCATAGACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (20 bp):
ATCGATATTTTTCATCAAAA
Found at i:10511254 original size:29 final size:28
Alignment explanation
Indices: 10511222--10511356 Score: 80
Period size: 29 Copynumber: 4.6 Consensus size: 28
10511212 GGTAAAACAG
*
10511222 TAATTTTGGATACTTC-A-GGCATAAAATGA
1 TAATTTTGGACAC-TCGAGGGCA-AAAAT-A
10511251 TAATTTTTGGACACTCGAGGGCAAAAATA
1 TAA-TTTTGGACACTCGAGGGCAAAAATA
* *
10511280 TAATTTTTAGACA-TCCGAGGG-TAAAATA
1 TAA-TTTTGGACACT-CGAGGGCAAAAATA
* * * * *
10511308 GTAATTTTTTGAAAACTTGAGGGTTAAAAATG
1 -TAA--TTTTGGACACTCGAGGG-CAAAAATA
10511340 TAATTTTGGACACTCGA
1 TAATTTTGGACACTCGA
10511357 AGGAAAATGG
Statistics
Matches: 85, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
28 7 0.08
29 38 0.45
30 27 0.32
31 8 0.09
32 5 0.06
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (28 bp):
TAATTTTGGACACTCGAGGGCAAAAATA
Found at i:10511261 original size:30 final size:29
Alignment explanation
Indices: 10511239--10511377 Score: 99
Period size: 29 Copynumber: 4.7 Consensus size: 29
10511229 GGATACTTCA
10511239 GGCATAAAATGATAATTTTTGGACACTCGAG
1 GGCA-AAAAT-ATAATTTTTGGACACTCGAG
*
10511270 GGCAAAAATATAATTTTTAGACA-TCCGAG
1 GGCAAAAATATAATTTTTGGACACT-CGAG
* * * *
10511299 GG-TAAAATAGTAATTTTTTGAAAACTTGAG
1 GGCAAAAATA-TAA-TTTTTGGACACTCGAG
* * *
10511329 GGTTAAAAATGTAA-TTTTGGACACTCGAA
1 GG-CAAAAATATAATTTTTGGACACTCGAG
*
10511358 GG--AAAATGGTAATTTTTGGA
1 GGCAAAAAT-ATAATTTTTGGA
10511378 TGTTCGAGGT
Statistics
Matches: 88, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
26 5 0.06
27 4 0.05
28 14 0.16
29 35 0.40
30 17 0.19
31 8 0.09
32 5 0.06
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (29 bp):
GGCAAAAATATAATTTTTGGACACTCGAG
Found at i:10511305 original size:58 final size:58
Alignment explanation
Indices: 10511243--10511377 Score: 134
Period size: 59 Copynumber: 2.3 Consensus size: 58
10511233 ACTTCAGGCA
* *
10511243 TAAAATGATAATTTTTGGACACTCGAGGG-CAAAAATATAATTTTTAGACA-TCCGAGGG
1 TAAAATGATAATTTTTGGAAACTCGAGGGTCAAAAATATAA-TTTTAGACACT-CGAAGG
* * * * *
10511301 TAAAAT-AGTAATTTTTTGAAAACTTGAGGGTTAAAAATGTAATTTTGGACACTCGAAGG
1 TAAAATGA-TAA-TTTTTGGAAACTCGAGGGTCAAAAATATAATTTTAGACACTCGAAGG
*
10511360 -AAAATGGTAATTTTTGGA
1 TAAAATGATAATTTTTGGA
10511378 TGTTCGAGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
57 8 0.13
58 17 0.27
59 28 0.44
60 10 0.16
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.33
Consensus pattern (58 bp):
TAAAATGATAATTTTTGGAAACTCGAGGGTCAAAAATATAATTTTAGACACTCGAAGG
Found at i:10511520 original size:58 final size:58
Alignment explanation
Indices: 10511394--10511843 Score: 332
Period size: 58 Copynumber: 7.7 Consensus size: 58
10511384 AGGTGAAAAC
* * * * *
10511394 GTAATTTTTGGAAAGTTTGGAGGCAAAAATGGAATTTTTTGAAGTTTTGAGGGTAAAATG
1 GTAATTTTTAGAAAGTTTGG-GGTAAAAATGGAATTTTTGGAAATTTAG-GGGTAAAATG
* **
10511454 GTAATTTTTAGAAATTTTGGGGTTAAAAATGGAA-TTTTGGAAATTCGGGGGTAAAATG
1 GTAATTTTTAGAAAGTTTGGGG-TAAAAATGGAATTTTTGGAAATTTAGGGGTAAAATG
* * * * *** * **
10511512 GTAATTTTT-GGATGTTCGGGGGTGAAAACACAATTTTTGGAAAGTTCGAGGTCTAAAAT-
1 GTAATTTTTAGAAAGTT-TGGGGTAAAAATGGAATTTTTGGAAA-TT-TAGGGGTAAAATG
* * *
10511571 GTAA-TTTTAGGAAGTTCGGGGGT-AAAATGGTAATTTTTGGAAAATTTTGGGGTCAAAATG
1 GTAATTTTTAGAAAGTT-TGGGGTAAAAATGG-AATTTTTGG-AAATTTAGGGGT-AAAATG
* * * * * *
10511631 G-AA-TTTTGGAAA-TTTGAGGG-CAAAATGATAATTTCTGGAAAGTTTAAGGTTAAAAT-
1 GTAATTTTTAGAAAGTTTG-GGGTAAAAATG-GAATTTTTGGAAA-TTTAGGGGTAAAATG
* * * *
10511687 GAAATTTTTAG-AACTTTAAGGGT-AAAATGGTAATTTTTGGAAAGTTTAGGGTTAAAATG
1 GTAATTTTTAGAAAGTTT-GGGGTAAAAATGG-AATTTTTGGAAA-TTTAGGGGTAAAATG
* * *
10511746 G-AATTTTTGGAAAGTTTGAGGTTAAAAATGGAATTTTTGGAAGTTTAGGGGTAAAATG
1 GTAATTTTTAGAAAGTTTG-GGGTAAAAATGGAATTTTTGGAAATTTAGGGGTAAAATG
*
10511804 GTAATTTTTAGAAAGTTTGAGGTCAAAAATGGAATTTTTG
1 GTAATTTTTAGAAAGTTTGGGGT-AAAAATGGAATTTTTG
10511844 AGGAGTTCGG
Statistics
Matches: 315, Mismatches: 49, Indels: 53
0.76 0.12 0.13
Matches are distributed among these distances:
56 1 0.00
57 24 0.08
58 135 0.43
59 108 0.34
60 47 0.15
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (58 bp):
GTAATTTTTAGAAAGTTTGGGGTAAAAATGGAATTTTTGGAAATTTAGGGGTAAAATG
Found at i:10511589 original size:59 final size:57
Alignment explanation
Indices: 10511488--10511597 Score: 150
Period size: 59 Copynumber: 1.9 Consensus size: 57
10511478 AAAAATGGAA
* * *
10511488 TTTTGGAAATTCGGGGGTAAAATGGTAATTTTTGGATGTTCGGGGGTGAAAACACAAT
1 TTTTGGAAATTCGGGGCTAAAATGGTAATTTTAGGAAGTTCGGGGGT-AAAACACAAT
*
10511546 TTTTGGAAAGTTCGAGGTCTAAAAT-GTAATTTTAGGAAGTTCGGGGGTAAAA
1 TTTTGGAAA-TTCG-GGGCTAAAATGGTAATTTTAGGAAGTTCGGGGGTAAAA
10511598 TGGTAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
58 13 0.28
59 25 0.54
60 8 0.17
ACGTcount: A:0.31, C:0.06, G:0.30, T:0.33
Consensus pattern (57 bp):
TTTTGGAAATTCGGGGCTAAAATGGTAATTTTAGGAAGTTCGGGGGTAAAACACAAT
Found at i:10511693 original size:146 final size:145
Alignment explanation
Indices: 10511298--10511843 Score: 507
Period size: 146 Copynumber: 3.7 Consensus size: 145
10511288 AGACATCCGA
* * ** * * * *
10511298 GGGTAAAATAGTAATTTTTTGAAAACTTGAGGGTTAAAAATGTAATTTTGGACACTCGAAGG-AA
1 GGGTAAAATGGTAATTTTTGGAAATTTTGAGGGTTAAAAATGGAATTTTGGAAATTCGAGGGTAA
* * * * * * *
10511362 AATGGTAATTTTTGGATGTTCGAGGTGAAAACGTAATTTTTGGAAAGTTTGGAGGCAAAAATGGA
66 AATGGTAATTTTTGGAAGTTTGAGGTGAAAATGAAATTTTTGGAAAG-TTCGAGGCTAAAATGTA
* *
10511427 ATTTTTTGAAGTTTTGA
130 ATTTTTGGAAG-TTTGG
* *
10511444 GGGTAAAATGGTAATTTTTAGAAATTTTG-GGGTTAAAAATGGAATTTTGGAAATTCGGGGGTAA
1 GGGTAAAATGGTAATTTTTGGAAATTTTGAGGGTTAAAAATGGAATTTTGGAAATTCGAGGGTAA
* * * *
10511508 AATGGTAATTTTTGGATGTTCGGGGGTGAAAA-CACAATTTTTGGAAAGTTCGAGGTCTAAAATG
66 AATGGTAATTTTTGGAAGTT-TGAGGTGAAAATGA-AATTTTTGGAAAGTTCGAGG-CTAAAATG
* *
10511572 TAATTTTAGGAAGTTCGG
128 TAATTTTTGGAAGTTTGG
* * *
10511590 GGGTAAAATGGTAATTTTTGGAAAATTTTG-GGG-TCAAAATGGAATTTTGGAAATTTGAGGGCA
1 GGGTAAAATGGTAATTTTTGG-AAATTTTGAGGGTTAAAAATGGAATTTTGGAAATTCGAGGGTA
* * * * * * ** *
10511653 AAATGATAATTTCTGGAAAGTTTAAGGTTAAAATGAAATTTTTAG-AACTTTAAGGGTAAAATGG
65 AAATGGTAATTTTTGG-AAGTTTGAGGTGAAAATGAAATTTTTGGAAAGTTCGAGGCTAAAAT-G
*
10511717 TAATTTTTGGAAAGTTTAG
128 TAATTTTTGG-AAGTTTGG
* * * *
10511736 GGTTAAAATGG-AATTTTTGGAAAGTTTGA-GGTTAAAAATGGAATTTTTGGAAGTT-TAGGGGT
1 GGGTAAAATGGTAATTTTTGGAAATTTTGAGGGTTAAAAATGGAA-TTTTGGAAATTCGA-GGGT
* * *
10511798 AAAATGGTAATTTTTAGAAAGTTTGAGGTCAAAAATGGAATTTTTG
64 AAAATGGTAATTTTT-GGAAGTTTGAGGT-GAAAATGAAATTTTTG
10511844 AGGAGTTCGG
Statistics
Matches: 331, Mismatches: 54, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
144 15 0.05
145 64 0.19
146 183 0.55
147 69 0.21
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (145 bp):
GGGTAAAATGGTAATTTTTGGAAATTTTGAGGGTTAAAAATGGAATTTTGGAAATTCGAGGGTAA
AATGGTAATTTTTGGAAGTTTGAGGTGAAAATGAAATTTTTGGAAAGTTCGAGGCTAAAATGTAA
TTTTTGGAAGTTTGG
Found at i:10511863 original size:30 final size:30
Alignment explanation
Indices: 10511396--10511863 Score: 198
Period size: 29 Copynumber: 15.9 Consensus size: 30
10511386 GTGAAAACGT
* *
10511396 AATTTTTG-GAAAGTTTGGAGGCAAAAATGG
1 AATTTTTGAG-AAGTTTGGGGGCTAAAATGG
* *
10511426 AATTTTT-TGAAGTTTTGAGGG-TAAAATGG
1 AATTTTTGAGAAG-TTTGGGGGCTAAAATGG
* * *
10511455 TAATTTTT-AGAAATTTTGGGGTTAAAAATGG
1 -AATTTTTGAGAAGTTTGGGGGCT-AAAATGG
* *
10511486 AA-TTTTG-GAAATTCGGGGG-TAAAATGG
1 AATTTTTGAGAAGTTTGGGGGCTAAAATGG
* * ***
10511513 TAATTTTTG-GATGTTCGGGGG-TGAAAACAC
1 -AATTTTTGAGAAGTTTGGGGGCT-AAAATGG
* * * *
10511543 AATTTTTG-GAAAGTTCGAGGTCTAAAATGT
1 AATTTTTGAG-AAGTTTGGGGGCTAAAATGG
* *
10511573 AATTTTAG-GAAGTTCGGGGG-TAAAATGG
1 AATTTTTGAGAAGTTTGGGGGCTAAAATGG
* * *
10511601 TAATTTTTGGAAAATTTTGGGGTC-AAAATGG
1 -AATTTTT-GAGAAGTTTGGGGGCTAAAATGG
* * *
10511632 AA-TTTTG-GAAATTTGAGGGC-AAAATGAT
1 AATTTTTGAGAAGTTTGGGGGCTAAAATG-G
* ** * *
10511660 AATTTCTG-GAAAGTTT-AAGGTTAAAATGA
1 AATTTTTGAG-AAGTTTGGGGGCTAAAATGG
* **
10511689 AATTTTT-AGAACTTTAAGGG-TAAAATGG
1 AATTTTTGAGAAGTTTGGGGGCTAAAATGG
* *
10511717 TAATTTTTG-GAAAGTTT-AGGGTTAAAATGG
1 -AATTTTTGAG-AAGTTTGGGGGCTAAAATGG
* *
10511747 AATTTTTG-GAAAGTTT-GAGGTTAAAAATGG
1 AATTTTTGAG-AAGTTTGGGGGCT-AAAATGG
*
10511777 AATTTTTG-GAAGTTTAGGGG-TAAAATGG
1 AATTTTTGAGAAGTTTGGGGGCTAAAATGG
* * *
10511805 TAATTTTT-AGAAAGTTTGAGGTCAAAAATGG
1 -AATTTTTGAG-AAGTTTGGGGGCTAAAATGG
* *
10511836 AATTTTTGAGGAGTTCGGGGGCTAAAAT
1 AATTTTTGAGAAGTTTGGGGGCTAAAAT
10511864 ATGTTTTTTG
Statistics
Matches: 350, Mismatches: 56, Indels: 64
0.74 0.12 0.14
Matches are distributed among these distances:
27 22 0.06
28 32 0.09
29 139 0.40
30 125 0.36
31 32 0.09
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.35
Consensus pattern (30 bp):
AATTTTTGAGAAGTTTGGGGGCTAAAATGG
Found at i:10511871 original size:59 final size:59
Alignment explanation
Indices: 10511360--10511863 Score: 274
Period size: 58 Copynumber: 8.6 Consensus size: 59
10511350 CACTCGAAGG
* * * *
10511360 AAAATGGTAATTTTTGGATGTTC-GAGGTGAAAACG-TAATTTTTGGAAAGTTTGGAGG-CA
1 AAAATGG-AATTTTTGGAAGTTCAGGGGT-AAAATGATAATTTTTAGAAAGTTT-GAGGTCA
* ** * * * *
10511419 AAAATGGAATTTTTTGAAGTTTTGAGGGTAAAATGGTAATTTTTAGAAATTTTGGGGTTA
1 AAAATGGAATTTTTGGAAGTTCAG-GGGTAAAATGATAATTTTTAGAAAGTTTGAGGTCA
* * * * * * * *
10511479 AAAATGGAA-TTTTGGAAATTCGGGGGTAAAATGGTAATTTTT-GGATGTTCGGGGGTGA
1 AAAATGGAATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTAGAAAGTT-TGAGGTCA
* ** * * *
10511537 AAACA--CAATTTTTGGAAAGTTCGAGGTCTAAAATG-TAA-TTTTAGGAAGTTCGGGGGT--
1 AAA-ATGGAATTTTTGG-AAGTTC-AGGGGTAAAATGATAATTTTTAGAAAGTT-TGAGGTCA
* ** * * *
10511594 AAAATGGTAATTTTTGGAAAATTTTGGGGTCAAAATG-GAA-TTTTGGAAA-TTTGAGGGC-
1 AAAATGG-AATTTTTGG-AAGTTCAGGGGT-AAAATGATAATTTTTAGAAAGTTTGAGGTCA
* * * * * * *
10511652 AAAATGATAATTTCTGGAAAGTTTAAGGTTAAAATGA-AATTTTTAG-AACTTTAAGGGT--
1 AAAATG-GAATTTTTGG-AAGTTCAGGGGTAAAATGATAATTTTTAGAAAGTTTGA-GGTCA
* * * * *
10511710 AAAATGGTAATTTTTGGAAAGTTTAGGGTTAAAATG-GAATTTTTGGAAAGTTTGAGGTTA
1 AAAATGG-AATTTTTGG-AAGTTCAGGGGTAAAATGATAATTTTTAGAAAGTTTGAGGTCA
* *
10511770 AAAATGGAATTTTTGGAAGTTTAGGGGTAAAATGGTAATTTTTAGAAAGTTTGAGGTCA
1 AAAATGGAATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTAGAAAGTTTGAGGTCA
* *
10511829 AAAATGGAATTTTTGAGGAGTTCGGGGGCTAAAAT
1 AAAATGGAATTTTTG-GAAGTTCAGGGG-TAAAAT
10511864 ATGTTTTTTG
Statistics
Matches: 359, Mismatches: 58, Indels: 54
0.76 0.12 0.11
Matches are distributed among these distances:
56 1 0.00
57 22 0.06
58 147 0.41
59 130 0.36
60 53 0.15
61 6 0.02
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.35
Consensus pattern (59 bp):
AAAATGGAATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTAGAAAGTTTGAGGTCA
Found at i:10513693 original size:17 final size:17
Alignment explanation
Indices: 10513671--10513752 Score: 89
Period size: 17 Copynumber: 5.0 Consensus size: 17
10513661 TTTTATTTAT
*
10513671 TAAATTTTAATTTAAAA
1 TAAATTTAAATTTAAAA
* *
10513688 TAAATTTAAACTCAAAA
1 TAAATTTAAATTTAAAA
*
10513705 TAAGTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
10513722 TAAATTTAAA-CT--AA
1 TAAATTTAAATTTAAAA
*
10513736 TAAATTAAAATTTAAAA
1 TAAATTTAAATTTAAAA
10513753 ATCCAAAATT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 11 0.21
15 1 0.02
16 1 0.02
17 39 0.75
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:10514299 original size:28 final size:28
Alignment explanation
Indices: 10514252--10514305 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
10514242 TAGGCTCAAT
*
10514252 ACTCGTCCAGCACATAAGTGTTGTATTA
1 ACTCGTCCAGCACATAAGTGTGGTATTA
*
10514280 ACTCGTCCAGCACCGT-AGTGTGGTAT
1 ACTCGTCCAGCA-CATAAGTGTGGTAT
10514306 AGCCCAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (28 bp):
ACTCGTCCAGCACATAAGTGTGGTATTA
Found at i:10514331 original size:70 final size:70
Alignment explanation
Indices: 10514243--10514375 Score: 221
Period size: 70 Copynumber: 1.9 Consensus size: 70
10514233 TAAAGCTCAT
* ** * *
10514243 AGGCTCAATACTCGTCCAGCACATAAGTGTTGTATTAACTCGTCCAGCACCGTAGTGTGGTATAG
1 AGGCTCAATACTCATCCAGCACATAAGTGCGGTATTAACTCGTCCAGCACCATAGTGCGGTATAG
10514308 CCCAA
66 CCCAA
10514313 AGGCTCAATACTCATCCAGCACATAAGTGCGGTATTAACTCGTCCAGCACCATAGTGCGGTAT
1 AGGCTCAATACTCATCCAGCACATAAGTGCGGTATTAACTCGTCCAGCACCATAGTGCGGTAT
10514376 TAACTCTTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (70 bp):
AGGCTCAATACTCATCCAGCACATAAGTGCGGTATTAACTCGTCCAGCACCATAGTGCGGTATAG
CCCAA
Found at i:10514362 original size:28 final size:28
Alignment explanation
Indices: 10514322--10514381 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 28
10514312 AAGGCTCAAT
10514322 ACTCATCCAGCA-CATAAGTGCGGTATTA
1 ACTCATCCAGCACCAT-AGTGCGGTATTA
*
10514350 ACTCGTCCAGCACCATAGTGCGGTATTA
1 ACTCATCCAGCACCATAGTGCGGTATTA
10514378 ACTC
1 ACTC
10514382 TTATTTCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 27 0.90
29 3 0.10
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (28 bp):
ACTCATCCAGCACCATAGTGCGGTATTA
Found at i:10518277 original size:28 final size:29
Alignment explanation
Indices: 10518236--10518296 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
10518226 AGTAACTAAG
* * *
10518236 TAACTGCTACTAACTGA-ACTATCAACCT
1 TAACTGATACTAACAGACACTAACAACCT
* *
10518264 TAACTGATAGTAACAGACTCTAACAACCT
1 TAACTGATACTAACAGACACTAACAACCT
10518293 TAAC
1 TAAC
10518297 CTACTACTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (29 bp):
TAACTGATACTAACAGACACTAACAACCT
Found at i:10524026 original size:4 final size:4
Alignment explanation
Indices: 10524017--10524143 Score: 112
Period size: 4 Copynumber: 31.5 Consensus size: 4
10524007 ATATTTTATT
* * * * *
10524017 AATA AATA AATA AGTA AGTA AATA AGTA AATAA AATA AACA AACA AATA
1 AATA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA AATA AATA
* * * *
10524066 AAT- AATA ACTA ACTA AATA AATA AATAA AATA AATA ACTA AATA TATA
1 AATA AATA AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AATA
* * * *
10524114 AATA AATA CATA TATA CATA TATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
10524144 ATATTTTTTT
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
3 3 0.03
4 92 0.89
5 8 0.08
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:10524114 original size:29 final size:28
Alignment explanation
Indices: 10524019--10524121 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 28
10524009 ATTTTATTAA
* * *
10524019 TAAATAAATAAGTAAGT-AAATAAGTAAA
1 TAAATAAATAAATAAATAAAATAA-TAAC
* *
10524047 TAAAATAAACAAACAAAT-AAATAATAAC
1 T-AAATAAATAAATAAATAAAATAATAAC
*
10524075 TAACTAAATAAATAAATAAAATAAATAAC
1 TAAATAAATAAATAAATAAAAT-AATAAC
*
10524104 TAAATATATAAATAAATA
1 TAAATAAATAAATAAATA
10524122 CATATATACA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
27 13 0.21
28 9 0.15
29 40 0.65
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (28 bp):
TAAATAAATAAATAAATAAAATAATAAC
Found at i:10530530 original size:20 final size:19
Alignment explanation
Indices: 10530470--10530531 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 19
10530460 TTAGTTTAAA
*
10530470 TTTATTTATATTTTTTATT
1 TTTATATATATTTTTTATT
*
10530489 TTTAAAATATAATTATTATTATT
1 TTT-ATATAT-ATT-TT-TTATT
10530512 TTTATATATATTCTTTTATT
1 TTTATATATATT-TTTTATT
10530532 AAATTTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.09
20 9 0.26
21 8 0.23
22 7 0.20
23 8 0.23
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATATATATTTTTTATT
Found at i:10537139 original size:20 final size:20
Alignment explanation
Indices: 10537017--10537149 Score: 79
Period size: 20 Copynumber: 6.7 Consensus size: 20
10537007 TTCTTTTAGG
* * *
10537017 AATTGTGGTAATTTTTTAAA
1 AATTTTGGTAAATTCTTAAA
* * *
10537037 AATTTTGATAAATTCATATA
1 AATTTTGGTAAATTCTTAAA
* *
10537057 AATTTTGATAAA-TCGATAAA
1 AATTTTGGTAAATTC-TTAAA
* * *
10537077 AATATTGGTAAAGTCTTAGA
1 AATTTTGGTAAATTCTTAAA
* * * * *
10537097 TATCTTCGTAAATCCTTATA
1 AATTTTGGTAAATTCTTAAA
* *
10537117 AATATTGGTAAATTGTTAAA
1 AATTTTGGTAAATTCTTAAA
*
10537137 AATTTTGATAAAT
1 AATTTTGGTAAAT
10537150 CTAGTATGTG
Statistics
Matches: 86, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
19 2 0.02
20 82 0.95
21 2 0.02
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
AATTTTGGTAAATTCTTAAA
Found at i:10537149 original size:40 final size:40
Alignment explanation
Indices: 10537033--10537150 Score: 103
Period size: 40 Copynumber: 3.0 Consensus size: 40
10537023 GGTAATTTTT
* * * * * *
10537033 TAAAAATTTTGATAAATTCATATAAATTTTGATAAATCGA
1 TAAAAATATTGGTAAAGTCTTAAAAATTTTGATAAATCCA
* * * *
10537073 TAAAAATATTGGTAAAGTCTTAGATATCTTCG-TAAATCCT
1 TAAAAATATTGGTAAAGTCTTAAAAAT-TTTGATAAATCCA
* * *
10537113 TATAAATATTGGTAAATTGTTAAAAATTTTGATAAATC
1 TAAAAATATTGGTAAAGTCTTAAAAATTTTGATAAATC
10537151 TAGTATGTGA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
39 3 0.05
40 55 0.90
41 3 0.05
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (40 bp):
TAAAAATATTGGTAAAGTCTTAAAAATTTTGATAAATCCA
Found at i:10540593 original size:51 final size:51
Alignment explanation
Indices: 10540529--10540629 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
10540519 TCTTTCAAAT
* *
10540529 GACTATTTGAATGTATCTGCTAAGCATTTATTTCACCACTCTTTTGAAAGA
1 GACTATTTGAATGTATCTGCTAAGCATTTATATCACCACTATTTTGAAAGA
*
10540580 GACTATTTGAATGTATCTGCTAAGCATTTATATCACCATTATTTTGAAAG
1 GACTATTTGAATGTATCTGCTAAGCATTTATATCACCACTATTTTGAAAG
10540630 TCATAAGAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (51 bp):
GACTATTTGAATGTATCTGCTAAGCATTTATATCACCACTATTTTGAAAGA
Found at i:10550281 original size:4 final size:4
Alignment explanation
Indices: 10550272--10550298 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
10550262 TGTAATGATA
10550272 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
10550299 TGATTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:10550480 original size:16 final size:16
Alignment explanation
Indices: 10550459--10550492 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
10550449 CAATTTAATA
10550459 TTTATATCGAAATCGT
1 TTTATATCGAAATCGT
10550475 TTTATATCGAAATCGT
1 TTTATATCGAAATCGT
10550491 TT
1 TT
10550493 AAGTGTATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (16 bp):
TTTATATCGAAATCGT
Found at i:10550743 original size:31 final size:31
Alignment explanation
Indices: 10550705--10550810 Score: 91
Period size: 31 Copynumber: 3.5 Consensus size: 31
10550695 TTAATATAAT
10550705 ATTTGGTACCTGAACTTGACACTTTTTCCTA
1 ATTTGGTACCTGAACTTGACACTTTTTCCTA
* *
10550736 ATTTGGTA-CTTAAATT-----TTTTTGACCTA
1 ATTTGGTACCTGAACTTGACACTTTTT--CCTA
*
10550763 AATTGGTACCTGAACTTGACACCTTTTT-CTA
1 ATTTGGTACCTGAACTTGACA-CTTTTTCCTA
* *
10550794 ATTTGGTATCTAAACTT
1 ATTTGGTACCTGAACTT
10550811 TTTTGGACCC
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
25 5 0.09
27 11 0.19
28 6 0.10
30 6 0.10
31 25 0.43
34 5 0.09
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.44
Consensus pattern (31 bp):
ATTTGGTACCTGAACTTGACACTTTTTCCTA
Found at i:10550777 original size:58 final size:60
Alignment explanation
Indices: 10550707--10550873 Score: 218
Period size: 59 Copynumber: 2.9 Consensus size: 60
10550697 AATATAATAT
* *
10550707 TTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACT-TAAA-TTTTTTTGACCTAAA
1 TTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTCTAAACTTTTTTGGACCCAAA
* *
10550765 TTGGTACCTGAACTTGACACCTTTTT-CTAATTTGGTA-TCTAAACTTTTTTGGACCCGAT
1 TTGGTACCTGAACTTGACA-CTTTTTCCTAATTTGGTACTCTAAACTTTTTTGGACCCAAA
* * * *
10550824 TTGATACTTGAACTTGACATTTTTTCCTAATTTGGTAC-CTAAGCTTTTTT
1 TTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTCTAAACTTTTTT
10550874 TATATTTAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
57 1 0.01
58 39 0.41
59 56 0.58
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (60 bp):
TTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTCTAAACTTTTTTGGACCCAAA
Found at i:10551127 original size:29 final size:31
Alignment explanation
Indices: 10551093--10551174 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
10551083 TGACCCCAAA
*
10551093 AAGTTTAAGTACCAACTTA-AAAAAA-TGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
*
10551122 AAGTTTAAATACCAAATTAGAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
* *
10551153 AAGTTTGAGTATCAAATT-GAAA
1 AAGTTTAAGTACCAAATTAGAAA
10551175 CAAAAAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 17 0.37
30 10 0.22
31 19 0.41
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
Found at i:10551153 original size:31 final size:29
Alignment explanation
Indices: 10551093--10551158 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
10551083 TGACCCCAAA
* *
10551093 AAGTTTAAGTACCAACTTAAAAAAATGTC
1 AAGTTTAAATACCAAATTAAAAAAATGTC
10551122 AAGTTTAAATACCAAATTAGAAAAAAGTGTC
1 AAGTTTAAATACCAAATTA-AAAAAA-TGTC
10551153 AAGTTT
1 AAGTTT
10551159 GAGTATCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 17 0.52
30 6 0.18
31 10 0.30
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (29 bp):
AAGTTTAAATACCAAATTAAAAAAATGTC
Done.