Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 37 of 193
Found at i:11358355 original size:39 final size:40
Alignment explanation
Indices: 11358268--11358366 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 40
11358258 TGGGACAAGT
11358268 CTCTTCCAAAAGGTGTCCATCCAATACGAAAAGGGTTGTAA
1 CTCTT-CAAAAGGTGTCCATCCAATACGAAAAGGGTTGTAA
* * * * * *
11358309 TTTTTCAAAAAGTGTCCGTCCAATATG-AAAGGGTTGTGA
1 CTCTTCAAAAGGTGTCCATCCAATACGAAAAGGGTTGTAA
11358348 CTCTTCAAAAGGTGTCCAT
1 CTCTTCAAAAGGTGTCCAT
11358367 TGAGTGCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 26 0.54
40 19 0.40
41 3 0.06
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (40 bp):
CTCTTCAAAAGGTGTCCATCCAATACGAAAAGGGTTGTAA
Found at i:11363283 original size:39 final size:40
Alignment explanation
Indices: 11363196--11363294 Score: 155
Period size: 39 Copynumber: 2.5 Consensus size: 40
11363186 TGGGACAAGT
11363196 CTCTTCCAAAAGGTGTCCATCCAATATGAAAAAGGTTGTGA
1 CTCTT-CAAAAGGTGTCCATCCAATATGAAAAAGGTTGTGA
* * *
11363237 CTTTTCAAAAGGTGTCCATCCAATATG-ACAGGGTTGTGA
1 CTCTTCAAAAGGTGTCCATCCAATATGAAAAAGGTTGTGA
11363276 CTCTTCAAAAGGTGTCCAT
1 CTCTTCAAAAGGTGTCCAT
11363295 TGAGTGCATA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 28 0.52
40 22 0.41
41 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (40 bp):
CTCTTCAAAAGGTGTCCATCCAATATGAAAAAGGTTGTGA
Found at i:11363977 original size:14 final size:14
Alignment explanation
Indices: 11363958--11363985 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11363948 CTTCTAAGAT
11363958 AAATAAATGTTTTA
1 AAATAAATGTTTTA
11363972 AAATAAATGTTTTA
1 AAATAAATGTTTTA
11363986 TAAACTCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
AAATAAATGTTTTA
Found at i:11364520 original size:19 final size:19
Alignment explanation
Indices: 11364488--11364525 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
11364478 TTATGCTCTT
*
11364488 TTTTTATGAATTTTGAATA
1 TTTTTATGAATTTTAAATA
11364507 TTTTTAT-AATTTTTAAATA
1 TTTTTATGAA-TTTTAAATA
11364526 ATTGATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTTTATGAATTTTAAATA
Found at i:11370194 original size:4 final size:4
Alignment explanation
Indices: 11370185--11370216 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
11370175 ATTACCTTAT
11370185 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
11370217 TATGTATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:11375215 original size:27 final size:27
Alignment explanation
Indices: 11375155--11375207 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
11375145 AGGAGTAATT
*
11375155 TAATTCTGGCTCAAAAGAGCGTTATTC
1 TAATTCTAGCTCAAAAGAGCGTTATTC
11375182 TAATTCTAGCTCAAAAGAGCGTTATT
1 TAATTCTAGCTCAAAAGAGCGTTATT
11375208 TTGATTCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTAGCTCAAAAGAGCGTTATTC
Found at i:11375304 original size:24 final size:24
Alignment explanation
Indices: 11375211--11375296 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 24
11375201 CGTTATTTTG
*
11375211 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTAGGCTCGTAAGAGCTAACC
* *
11375235 ATTCCAGGCTCGTAAGAGCTAACT
1 ATTCTAGGCTCGTAAGAGCTAACC
*
11375259 ATTCTAGGCTCGTAGGAGCTAACC
1 ATTCTAGGCTCGTAAGAGCTAACC
* *
11375283 GTTCTGGGCTCGTA
1 ATTCTAGGCTCGTA
11375297 TGGGCTAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (24 bp):
ATTCTAGGCTCGTAAGAGCTAACC
Found at i:11375304 original size:48 final size:48
Alignment explanation
Indices: 11375211--11375309 Score: 126
Period size: 48 Copynumber: 2.1 Consensus size: 48
11375201 CGTTATTTTG
* *
11375211 ATTCTGGGCTCGTAAGAGCTAACCATTCCAGGCTCGTAAGAGCTAACT
1 ATTCTAGGCTCGTAAGAGCTAACCATTCCAGGCTCGTAAGAGCTAAAT
* * ** * *
11375259 ATTCTAGGCTCGTAGGAGCTAACCGTTCTGGGCTCGTATGGGCTAAAT
1 ATTCTAGGCTCGTAAGAGCTAACCATTCCAGGCTCGTAAGAGCTAAAT
11375307 ATT
1 ATT
11375310 GTCTATGCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (48 bp):
ATTCTAGGCTCGTAAGAGCTAACCATTCCAGGCTCGTAAGAGCTAAAT
Found at i:11378781 original size:2 final size:2
Alignment explanation
Indices: 11378730--11378764 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
11378720 TACTGATTAC
* *
11378730 CT CT TT CT CT CT CG CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
11378765 CCCCTCCCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.49, G:0.03, T:0.49
Consensus pattern (2 bp):
CT
Found at i:11387476 original size:27 final size:27
Alignment explanation
Indices: 11387438--11387494 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
11387428 TTGCAACTTT
* *
11387438 TTCACTTCATTAACAGCTTTATTGGGC
1 TTCACTTCATTAACAACTTTATTAGGC
* * *
11387465 TTCATTTCATTAGCAACTTTGTTAGGC
1 TTCACTTCATTAACAACTTTATTAGGC
11387492 TTC
1 TTC
11387495 TTCTCCACCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (27 bp):
TTCACTTCATTAACAACTTTATTAGGC
Found at i:11388804 original size:31 final size:29
Alignment explanation
Indices: 11388764--11388831 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 29
11388754 TGTCAATCTT
11388764 TTTAATAAAATGAGACAAAAATAATAGTTTA
1 TTTAATAAAATGAGACAAAAA-AA-AGTTTA
*
11388795 TTTATTAAAATGAGACAAAAAAAAGTTTA
1 TTTAATAAAATGAGACAAAAAAAAGTTTA
*
11388824 -ATAATAAA
1 TTTAATAAA
11388832 GTGAAGAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 6 0.18
29 6 0.18
30 2 0.06
31 20 0.59
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (29 bp):
TTTAATAAAATGAGACAAAAAAAAGTTTA
Found at i:11397992 original size:8 final size:8
Alignment explanation
Indices: 11397979--11398007 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
11397969 ACCATTCTAC
11397979 AAAGTATT
1 AAAGTATT
11397987 AAAGTATT
1 AAAGTATT
11397995 AAAGTATT
1 AAAGTATT
11398003 AAAGT
1 AAAGT
11398008 TCATTTTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (8 bp):
AAAGTATT
Found at i:11407524 original size:2 final size:2
Alignment explanation
Indices: 11407517--11407554 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
11407507 CACAAACTTC
11407517 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11407555 CACCCTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11412247 original size:8 final size:8
Alignment explanation
Indices: 11412234--11412283 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
11412224 AGTTTAGTAC
11412234 TTAATAAT
1 TTAATAAT
11412242 TTAATAAT
1 TTAATAAT
**
11412250 TTAATCTT
1 TTAATAAT
11412258 GTTAAT-AT
1 -TTAATAAT
*
11412266 TTAATTAT
1 TTAATAAT
11412274 TTAATAAT
1 TTAATAAT
11412282 TT
1 TT
11412284 TCTCTTGCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 5 0.14
8 26 0.72
9 5 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (8 bp):
TTAATAAT
Found at i:11412290 original size:32 final size:32
Alignment explanation
Indices: 11412234--11412299 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
11412224 AGTTTAGTAC
* *
11412234 TTAATAATTTAATAATTTAATCTTGTTAATAT
1 TTAATAATTTAATAATTTAATCTTGCTAAAAT
* **
11412266 TTAATTATTTAATAATTTTCTCTTGCTAAAAT
1 TTAATAATTTAATAATTTAATCTTGCTAAAAT
11412298 TT
1 TT
11412300 TAAACACAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (32 bp):
TTAATAATTTAATAATTTAATCTTGCTAAAAT
Found at i:11417592 original size:25 final size:26
Alignment explanation
Indices: 11417564--11417619 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
11417554 TTCCATCCCT
11417564 ATTTTACC-CCGACAAAATTTTGACG
1 ATTTTACCTCCGACAAAATTTTGACG
** **
11417589 ATTTTACCTTTGGTAAAATTTTGACG
1 ATTTTACCTCCGACAAAATTTTGACG
11417615 ATTTT
1 ATTTT
11417620 GTTCTTGGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (26 bp):
ATTTTACCTCCGACAAAATTTTGACG
Found at i:11420335 original size:15 final size:17
Alignment explanation
Indices: 11420305--11420350 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
11420295 TCATAAAAAT
11420305 TAAAATATTATAAATAA
1 TAAAATATTATAAATAA
11420322 -ATAAATATT-T-AATAA
1 TA-AAATATTATAAATAA
11420337 TAAAATATTA-AAAT
1 TAAAATATTATAAAT
11420351 TTACGGAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
15 12 0.48
16 6 0.24
17 7 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAATATTATAAATAA
Found at i:11426977 original size:51 final size:52
Alignment explanation
Indices: 11426884--11426992 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 52
11426874 AAAAATGGTG
* * * *
11426884 AAAATGGAGAAATGAGAAACATTTGAAAATTATTATGGTTTTCTTCAAAATA
1 AAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATA
* * *
11426936 AAAATGGAGAAATGA-AATCATTTGAAAATGAATGTGATTTTCTCCAAAATG
1 AAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATA
11426987 AAAATG
1 AAAATG
11426993 ATTTGAAAAC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 35 0.70
52 15 0.30
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (52 bp):
AAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATA
Found at i:11429059 original size:20 final size:19
Alignment explanation
Indices: 11429034--11429087 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
11429024 CAAGGACATT
11429034 GAAGTGCAAACAGGGCCACC
1 GAAGTGCAAACAGGG-CACC
* *
11429054 GGAGTGCAAACAGGGCACT
1 GAAGTGCAAACAGGGCACC
*
11429073 GAAGTGCAAATAGGG
1 GAAGTGCAAACAGGG
11429088 GCACTTCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.35, C:0.20, G:0.35, T:0.09
Consensus pattern (19 bp):
GAAGTGCAAACAGGGCACC
Found at i:11429091 original size:20 final size:20
Alignment explanation
Indices: 11429033--11429092 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
11429023 TCAAGGACAT
*
11429033 TGAAGTGCAAACAGGGCCAC
1 TGAAGTGCAAACAGGGGCAC
* *
11429053 CGGAGTGCAAACA-GGGCAC
1 TGAAGTGCAAACAGGGGCAC
*
11429072 TGAAGTGCAAATAGGGGCAC
1 TGAAGTGCAAACAGGGGCAC
11429092 T
1 T
11429093 TCTTCAGTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.33, C:0.22, G:0.33, T:0.12
Consensus pattern (20 bp):
TGAAGTGCAAACAGGGGCAC
Found at i:11431581 original size:49 final size:49
Alignment explanation
Indices: 11431509--11431606 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
11431499 GCCAGCATAT
11431509 CTTATGACATTATTTCCAATATTATGGAAATTTCCCTTTGAACAAAACA
1 CTTATGACATTATTTCCAATATTATGGAAATTTCCCTTTGAACAAAACA
11431558 CTTATGACATTATTTCCAATATTATGGAAATTTCCCTTTGAACAAAACA
1 CTTATGACATTATTTCCAATATTATGGAAATTTCCCTTTGAACAAAACA
11431607 TTCATAAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (49 bp):
CTTATGACATTATTTCCAATATTATGGAAATTTCCCTTTGAACAAAACA
Found at i:11435455 original size:23 final size:23
Alignment explanation
Indices: 11435423--11435469 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
11435413 GTGTATTTCA
*
11435423 TATTCTAGTTAAATCGAAAAACT
1 TATTCAAGTTAAATCGAAAAACT
* * *
11435446 TATTCAAGTTGATTCGAATAACT
1 TATTCAAGTTAAATCGAAAAACT
11435469 T
1 T
11435470 GATTAACTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (23 bp):
TATTCAAGTTAAATCGAAAAACT
Found at i:11442546 original size:30 final size:29
Alignment explanation
Indices: 11442484--11442548 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
11442474 GTTATATCTT
**
11442484 AAAATTATATTTTGATTCCAAACTATTCA
1 AAAATTATATTTTGACCCCAAACTATTCA
* * *
11442513 AAAATTATGTTTTGACCCCTAAACTTTTTA
1 AAAATTATATTTTGACCCC-AAACTATTCA
11442543 AAAATT
1 AAAATT
11442549 TAAATTTAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.42
Consensus pattern (29 bp):
AAAATTATATTTTGACCCCAAACTATTCA
Found at i:11442569 original size:29 final size:30
Alignment explanation
Indices: 11442529--11442645 Score: 98
Period size: 30 Copynumber: 3.9 Consensus size: 30
11442519 ATGTTTTGAC
*
11442529 CCCTAAACTTTT-TAAAAATTTAAATTTAA
1 CCCTAAACTTTTCTAAAAATTCAAATTTAA
*
11442558 CCCTCAAA-TTTTCTAAAAATTCAAATTTGA
1 CCCT-AAACTTTTCTAAAAATTCAAATTTAA
** * * *
11442588 CCTCCGAA-GTTTCCAAAAATTCAAATTTGAC
1 CC-CTAAACTTTTCTAAAAATTCAAATTT-AA
* *
11442619 CCCTAAA-TTTTCCAAAAATTCTAATTT
1 CCCTAAACTTTTCTAAAAATTCAAATTT
11442646 GACCTCCGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.11
30 61 0.85
31 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (30 bp):
CCCTAAACTTTTCTAAAAATTCAAATTTAA
Found at i:11442575 original size:30 final size:30
Alignment explanation
Indices: 11442542--11442678 Score: 154
Period size: 30 Copynumber: 4.6 Consensus size: 30
11442532 TAAACTTTTT
* * *
11442542 AAAAATTTAAATTTAACCCTCAAATTTTCT
1 AAAAATTCAAATTTGACCCTCAAATTTTCC
* *
11442572 AAAAATTCAAATTTGA-CCTCCGAAGTTTCC
1 AAAAATTCAAATTTGACCCT-CAAATTTTCC
11442602 AAAAATTCAAATTTGACCC-CTAAATTTTCC
1 AAAAATTCAAATTTGACCCTC-AAATTTTCC
* * *
11442632 AAAAATTCTAATTTGA-CCTCCGAAGTTTCC
1 AAAAATTCAAATTTGACCCT-CAAATTTTCC
11442662 AAAAATTCAAATTTGAC
1 AAAAATTCAAATTTGAC
11442679 TCTATTTTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
29 6 0.07
30 81 0.90
31 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (30 bp):
AAAAATTCAAATTTGACCCTCAAATTTTCC
Found at i:11442587 original size:60 final size:60
Alignment explanation
Indices: 11442523--11442675 Score: 184
Period size: 60 Copynumber: 2.5 Consensus size: 60
11442513 AAAATTATGT
** * *
11442523 TTTGACC-CCTAAACTTTTTAAAAATTTAAATTTAA-CCCTCAAATTTTCTAAAAATTCAAA
1 TTTGACCTCC-AAACTTTCCAAAAATTCAAATTTAACCCCT-AAATTTTCCAAAAATTCAAA
* * * *
11442583 TTTGACCTCCGAAGTTTCCAAAAATTCAAATTTGACCCCTAAATTTTCCAAAAATTCTAA
1 TTTGACCTCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAATTTTCCAAAAATTCAAA
* *
11442643 TTTGACCTCCGAAGTTTCCAAAAATTCAAATTT
1 TTTGACCTCCAAACTTTCCAAAAATTCAAATTT
11442676 GACTCTATTT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
60 77 0.93
61 6 0.07
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (60 bp):
TTTGACCTCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAATTTTCCAAAAATTCAAA
Found at i:11442676 original size:60 final size:61
Alignment explanation
Indices: 11442542--11442678 Score: 224
Period size: 60 Copynumber: 2.3 Consensus size: 61
11442532 TAAACTTTTT
* * *
11442542 AAAAATTTAAATTT-AACCCTCAAATTTTCTAAAAATTCAAATTTGACCTCCGAAGTTTCC
1 AAAAATTCAAATTTGACCCCTCAAATTTTCCAAAAATTCAAATTTGACCTCCGAAGTTTCC
*
11442602 AAAAATTCAAATTTGACCCCT-AAATTTTCCAAAAATTCTAATTTGACCTCCGAAGTTTCC
1 AAAAATTCAAATTTGACCCCTCAAATTTTCCAAAAATTCAAATTTGACCTCCGAAGTTTCC
11442662 AAAAATTCAAATTTGAC
1 AAAAATTCAAATTTGAC
11442679 TCTATTTTAA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 67 0.93
61 5 0.07
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (61 bp):
AAAAATTCAAATTTGACCCCTCAAATTTTCCAAAAATTCAAATTTGACCTCCGAAGTTTCC
Found at i:11448290 original size:25 final size:23
Alignment explanation
Indices: 11448233--11448393 Score: 157
Period size: 23 Copynumber: 6.9 Consensus size: 23
11448223 TTACCGTTCA
*
11448233 GCACTGTGTGTGCTTACTGTTTC
1 GCACTTTGTGTGCTTACTGTTTC
11448256 GCACTTTGTGTGCTTACTGTTTC
1 GCACTTTGTGTGCTTACTGTTTC
* *
11448279 GCACTTTGTGTGCCTACTGTTCC
1 GCACTTTGTGTGCTTACTGTTTC
* *
11448302 GCACTTCGTGTGCCTACTGATTT-
1 GCACTTTGTGTGCTTACTG-TTTC
* * * * *
11448325 GCGCTATGTGCGCCTACTGATT-
1 GCACTTTGTGTGCTTACTGTTTC
*
11448347 GCACTGTGTGTGCTTACTGTTTCCCC
1 GCACTTTGTGTGCTTACTGTTT---C
11448373 AGCAC-TTGTGTGCTTACTGTT
1 -GCACTTTGTGTGCTTACTGTT
11448394 AAGTACTTCG
Statistics
Matches: 116, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
22 19 0.16
23 76 0.66
24 2 0.02
26 15 0.13
27 4 0.03
ACGTcount: A:0.11, C:0.25, G:0.24, T:0.40
Consensus pattern (23 bp):
GCACTTTGTGTGCTTACTGTTTC
Found at i:11452722 original size:128 final size:128
Alignment explanation
Indices: 11452449--11452723 Score: 293
Period size: 128 Copynumber: 2.1 Consensus size: 128
11452439 AGTACACGTG
* * * * *
11452449 CGTGTGCCAGACCGTGTGTGTATACTATTTTGGGTCACGCGGGCTGGGCACACGAGCATGTGTCA
1 CGTGTGCCAGACCGTGTGTGTATACTACTTGGGGACACACGGGCTGGGCACACGAGCATGTGCCA
** * * * * * *
11452514 GACCATGTGTGCATACTGTTTTGTGAATTAAGGTACAAGGGACACACGGGTCAGGCACACGGG
66 GACCATGTGAACATACTGTTTCGTCAATTAAGGTACAAGGGACACACGGGCCAGACACACAGC
* * * * * *
11452577 TGTGTGCCAAACTGTGTGTGTATACTACTTGGGGACACACGTGCTGGGCACACGGGCGTGTGCCA
1 CGTGTGCCAGACCGTGTGTGTATACTACTTGGGGACACACGGGCTGGGCACACGAGCATGTGCCA
* * * *
11452642 GACCGTGTGAATATACTGTTTCG-CAATTTAAGGTGC-AGTGGTCACACGGGCCAGACACACAGC
66 GACCATGTGAACATACTGTTTCGTCAA-TTAAGGTACAAG-GGACACACGGGCCAGACACACAGC
* *
11452705 CGTGTGACAGGCCGTGTGT
1 CGTGTGCCAGACCGTGTGT
11452724 CACACATGAG
Statistics
Matches: 117, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
127 4 0.03
128 113 0.97
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.24
Consensus pattern (128 bp):
CGTGTGCCAGACCGTGTGTGTATACTACTTGGGGACACACGGGCTGGGCACACGAGCATGTGCCA
GACCATGTGAACATACTGTTTCGTCAATTAAGGTACAAGGGACACACGGGCCAGACACACAGC
Found at i:11463651 original size:32 final size:32
Alignment explanation
Indices: 11463606--11463670 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
11463596 TGATCTTTTC
*
11463606 TTCTTAAATTTTGTATGTTTATATATAAACAT
1 TTCTTAAAATTTGTATGTTTATATATAAACAT
11463638 TTCTTAAAATTTGTATGTTTATATATAAACAT
1 TTCTTAAAATTTGTATGTTTATATATAAACAT
11463670 T
1 T
11463671 GTATCATCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (32 bp):
TTCTTAAAATTTGTATGTTTATATATAAACAT
Found at i:11469477 original size:26 final size:26
Alignment explanation
Indices: 11469433--11469736 Score: 287
Period size: 26 Copynumber: 11.7 Consensus size: 26
11469423 ATCGCAAACA
* *
11469433 AATATATAGCAAGCCTT-GAGCTAGTG
1 AATATATAGC-AGGCTTCGAGCCAGTG
* * * *
11469459 AGTATATAGCAGACTTTGAGCTAGTG
1 AATATATAGCAGGCTTCGAGCCAGTG
*
11469485 AATA-ATTAGCAGGCTTCAAGCCAGTG
1 AATATA-TAGCAGGCTTCGAGCCAGTG
*
11469511 AATAAATAGCAGGCTTCGAGCCAGTG
1 AATATATAGCAGGCTTCGAGCCAGTG
* *
11469537 AATATATAGCATGCCTT-GAGCCGGTG
1 AATATATAGCA-GGCTTCGAGCCAGTG
* *
11469563 AATAAATAGCAGGCTTCGAGCCGGTG
1 AATATATAGCAGGCTTCGAGCCAGTG
* *
11469589 AATATATATCAGGCCTT-GAGCTAGTG
1 AATATATAGCAGG-CTTCGAGCCAGTG
* * *
11469615 AATAAATAGCAAGCTTCGAGCCGGTG
1 AATATATAGCAGGCTTCGAGCCAGTG
* *
11469641 AATATATAGCAGGCCTT-AAGCCGGTG
1 AATATATAGCAGG-CTTCGAGCCAGTG
**
11469667 AATACT-TAGCAGGCTTCGAGCTGGTG
1 AATA-TATAGCAGGCTTCGAGCCAGTG
*
11469693 AATAAATAGCAGGCTTCGAGCCAGTG
1 AATATATAGCAGGCTTCGAGCCAGTG
** *
11469719 TTTATATAGCAAGCTTCG
1 AATATATAGCAGGCTTCG
11469737 TACAGGTGTA
Statistics
Matches: 233, Mismatches: 34, Indels: 22
0.81 0.12 0.08
Matches are distributed among these distances:
25 16 0.07
26 205 0.88
27 12 0.05
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (26 bp):
AATATATAGCAGGCTTCGAGCCAGTG
Found at i:11476788 original size:26 final size:27
Alignment explanation
Indices: 11476759--11476928 Score: 158
Period size: 26 Copynumber: 6.5 Consensus size: 27
11476749 ATCGTAAATA
11476759 AATATATAGCAGGCCTT-GAGCCGGTG
1 AATATATAGCAGGCCTTCGAGCCGGTG
* *
11476785 AATA-ATTAACAGG-CTTTGAGCCGGTG
1 AATATA-TAGCAGGCCTTCGAGCCGGTG
* *
11476811 AATATATAGTA-GACTTCGAGCCGGTG
1 AATATATAGCAGGCCTTCGAGCCGGTG
* *
11476837 AATATAAAGCAGGCCTT-GAGCCAGTG
1 AATATATAGCAGGCCTTCGAGCCGGTG
*
11476863 AATA-ATTAGCAGG-CTTCGAGCTGGTG
1 AATATA-TAGCAGGCCTTCGAGCCGGTG
* * *
11476889 AATAAATAGCAAG-TTTCGAGCCGGTG
1 AATATATAGCAGGCCTTCGAGCCGGTG
* *
11476915 ATTATATAACAGGC
1 AATATATAGCAGGC
11476929 TTCTTGCCAG
Statistics
Matches: 117, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
25 9 0.08
26 102 0.87
27 6 0.05
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (27 bp):
AATATATAGCAGGCCTTCGAGCCGGTG
Found at i:11476889 original size:78 final size:78
Alignment explanation
Indices: 11476759--11476928 Score: 227
Period size: 78 Copynumber: 2.2 Consensus size: 78
11476749 ATCGTAAATA
* * * * *
11476759 AATATATAGCAGGCCTTGAGCCGGTGAATAATTAACAGGCTTTGAGCCGGTGAATATATAG-TAG
1 AATATAAAGCAGGCCTTGAGCCAGTGAATAATTAACAGGCTTCGAGCCGGTGAATAAATAGCAAG
11476823 ACTTCGAGCCGGTG
66 -CTTCGAGCCGGTG
* *
11476837 AATATAAAGCAGGCCTTGAGCCAGTGAATAATTAGCAGGCTTCGAGCTGGTGAATAAATAGCAAG
1 AATATAAAGCAGGCCTTGAGCCAGTGAATAATTAACAGGCTTCGAGCCGGTGAATAAATAGCAAG
*
11476902 TTTCGAGCCGGTG
66 CTTCGAGCCGGTG
*
11476915 ATTATATAA-CAGGC
1 AATATA-AAGCAGGC
11476929 TTCTTGCCAG
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 77 0.95
79 4 0.05
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (78 bp):
AATATAAAGCAGGCCTTGAGCCAGTGAATAATTAACAGGCTTCGAGCCGGTGAATAAATAGCAAG
CTTCGAGCCGGTG
Found at i:11478618 original size:15 final size:17
Alignment explanation
Indices: 11478588--11478620 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
11478578 ATATGAATAT
11478588 ATTTGAAAATTATAAAA
1 ATTTGAAAATTATAAAA
11478605 ATTT-AAAA-TATAAAA
1 ATTTGAAAATTATAAAA
11478620 A
1 A
11478621 AAATATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 4 0.25
17 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
ATTTGAAAATTATAAAA
Found at i:11491736 original size:15 final size:15
Alignment explanation
Indices: 11491712--11491742 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11491702 CAATAGGTTT
11491712 TACCAATTTTTGAAA
1 TACCAATTTTTGAAA
*
11491727 TACCAGTTTTTGAAA
1 TACCAATTTTTGAAA
11491742 T
1 T
11491743 TCTAGCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (15 bp):
TACCAATTTTTGAAA
Found at i:11495416 original size:16 final size:16
Alignment explanation
Indices: 11495395--11495425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11495385 ATAAATTGAT
*
11495395 TGATTCAAATTCAAAA
1 TGATTCAAACTCAAAA
11495411 TGATTCAAACTCAAA
1 TGATTCAAACTCAAA
11495426 GTGACATGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (16 bp):
TGATTCAAACTCAAAA
Found at i:11495477 original size:23 final size:23
Alignment explanation
Indices: 11495450--11495494 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
11495440 CCGAAACTTA
*
11495450 AAATAATTGA-ATCGAAATGACTC
1 AAATAAGTGACAT-GAAATGACTC
11495473 AAATAAGTGACATGAAATGACT
1 AAATAAGTGACATGAAATGACT
11495495 TGAAAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (23 bp):
AAATAAGTGACATGAAATGACTC
Found at i:11495746 original size:111 final size:111
Alignment explanation
Indices: 11495612--11495833 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
11495602 TAAGACTTGA
11495612 AAGGACTTAATCTAGATTGGCTTTACCCAAACTAACCCTAATGAATGATAATGAGCTCAAAACTT
1 AAGGACTTAATCTAGATTGGCTTTACCCAAACTAACCCTAATGAATGATAATGAGCTCAAAACTT
11495677 ATCCAAACCGTTTGAAAATTCCAAAGCAGAAGTGACTAAAATCATT
66 ATCCAAACCGTTTGAAAATTCCAAAGCAGAAGTGACTAAAATCATT
11495723 AAGGACTTAATCTAGATTGGCTTTACCCAAACTAACCCTAATGAATGATAATGAGCTCAAAACTT
1 AAGGACTTAATCTAGATTGGCTTTACCCAAACTAACCCTAATGAATGATAATGAGCTCAAAACTT
11495788 ATCCAAACCGTTTGAAAATTCCAAAGCAGAAGTGACTAAAATCATT
66 ATCCAAACCGTTTGAAAATTCCAAAGCAGAAGTGACTAAAATCATT
11495834 CAAACTTGTA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (111 bp):
AAGGACTTAATCTAGATTGGCTTTACCCAAACTAACCCTAATGAATGATAATGAGCTCAAAACTT
ATCCAAACCGTTTGAAAATTCCAAAGCAGAAGTGACTAAAATCATT
Found at i:11496478 original size:61 final size:59
Alignment explanation
Indices: 11496389--11496920 Score: 513
Period size: 61 Copynumber: 8.8 Consensus size: 59
11496379 TAAAAAAAAA
* * * *
11496389 TTTGGTGTTGCCCATTGC-ATGGTCGACACCCCTTTTTAATCTGATAAAAAAAATCAAATTT
1 TTTGGTGTTGGCCA-TGCAATGGCCGACACCCCTTTTT--TCAGATAAAAAAATTCAAATTT
* * *
11496450 TTGGGTGTTGGCCATGCAATGGCTGACACCTCTTTTTTGTCAGAT-AAAAAATTC-AATTT
1 TTTGGTGTTGGCCATGCAATGGCCGACACC-CCTTTTT-TCAGATAAAAAAATTCAAATTT
*
11496509 TTTGGTGTTGGCCATGCAATGGCCGACACCCCTATTTATCAGATAAAAAAA-TCAAATTT
1 TTTGGTGTTGGCCATGCAATGGCCGACACCCCT-TTTTTCAGATAAAAAAATTCAAATTT
* * * * ** *
11496568 TTGGGTGTTGGCCATACAATGACCGACACTCTCTTTTTTCAGATAAAAATTTTTTAAATTT
1 TTTGGTGTTGGCCATGCAATGGCCGACAC-CCCTTTTTTCAGATAAAAA-AATTCAAATTT
** ** * *
11496629 TTTGGTGTTGGCCATTTAATGGCTTACACCCCTATTTATCTGAT-AAAAAA-TCAAATTT
1 TTTGGTGTTGGCCATGCAATGGCCGACACCCCT-TTTTTCAGATAAAAAAATTCAAATTT
* *
11496687 TTGGGTGTTGGCCATGCAATGACCGACACCCTCTTTTTTCAGATAAAAAAATTTCAAATTT
1 TTTGGTGTTGGCCATGCAATGGCCGACACCC-CTTTTTTCAGATAAAAAAA-TTCAAATTT
* * ** * * *
11496748 TTTGGTGTTGGCCATTCAATGGTCGATGCCCTCTTTTTGCAGATAAAAAAATTTTAATTTTT
1 TTTGGTGTTGGCCATGCAATGGCCGACACCC-CTTTTTTCAGATAAAAAAA-TTCAA-ATTT
*
11496810 TTTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTT-AGATAAAAAATTTCAAATTTTT
1 TTTGGTGTTGGCCATGCAATGGCCGACA-CCCCTTTTTTCAGATAAAAAAATTCAAA--TTT
* * ** *
11496871 TTTTGTGTTGACCATGTC-ATGATCGACACCCCTTTTTGTTAGATAAAAAA
1 TTTGGTGTTGGCCATG-CAATGGCCGACACCCCTTTTT-TCAGATAAAAAA
11496921 TTACATGGCC
Statistics
Matches: 390, Mismatches: 61, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
58 50 0.13
59 95 0.24
60 34 0.09
61 158 0.41
62 50 0.13
63 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (59 bp):
TTTGGTGTTGGCCATGCAATGGCCGACACCCCTTTTTTCAGATAAAAAAATTCAAATTT
Found at i:11496707 original size:119 final size:117
Alignment explanation
Indices: 11496389--11496871 Score: 546
Period size: 119 Copynumber: 4.0 Consensus size: 117
11496379 TAAAAAAAAA
* * *
11496389 TTTGGTGTTGCCCATTGC-ATGGTCGACACCCCTTTTTAATCTGATAAAAAAAATCAAATTTTTG
1 TTTGGTGTTGGCCATT-CAATGGCCGACACCCCTATTT-ATCTGAT-AAAAAAATCAAATTTTTG
* * * *
11496453 GGTGTTGGCCATGCAATGGCTGACACCTCTTTTTTGTCAGATAAAAA-ATTCAATTT
63 GGTGTTGGCCATGCAATGACCGACACCTC-TTTTT-TCAGATAAAAATTTTAAATTT
* *
11496509 TTTGGTGTTGGCCATGCAATGGCCGACACCCCTATTTATCAGATAAAAAAATCAAATTTTTGGGT
1 TTTGGTGTTGGCCATTCAATGGCCGACACCCCTATTTATCTGATAAAAAAATCAAATTTTTGGGT
*
11496574 GTTGGCCATACAATGACCGACACTCTCTTTTTTCAGATAAAAATTTTTTAAATTT
66 GTTGGCCATGCAATGACCGACAC-CTCTTTTTTCAGATAAAAA--TTTTAAATTT
* **
11496629 TTTGGTGTTGGCCATTTAATGGCTTACACCCCTATTTATCTGAT-AAAAAATCAAATTTTTGGGT
1 TTTGGTGTTGGCCATTCAATGGCCGACACCCCTATTTATCTGATAAAAAAATCAAATTTTTGGGT
*
11496693 GTTGGCCATGCAATGACCGACACCCTCTTTTTTCAGATAAAAAAATTTCAAATTT
66 GTTGGCCATGCAATGACCGACA-CCTCTTTTTTCAGAT--AAAAATTTTAAATTT
* ** * * *
11496748 TTTGGTGTTGGCCATTCAATGGTCGATGCCCTCT-TTT-TGCAGATAAAAAAATTTTAATTTTTT
1 TTTGGTGTTGGCCATTCAATGGCCGACACCC-CTATTTAT-CTGATAAAAAAA--TCAA-ATTTT
* * * *
11496811 TTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTT-AGATAAAAAATTTCAAATTT
61 TGGGTGTTGGCCATGCAATGACCGACA-CCTCTTTTTTCAGAT-AAAAATTTTAAATTT
11496869 TTT
1 TTT
11496872 TTTGTGTTGA
Statistics
Matches: 320, Mismatches: 29, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
117 11 0.03
118 47 0.15
119 106 0.33
120 86 0.27
121 24 0.08
122 7 0.02
123 39 0.12
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (117 bp):
TTTGGTGTTGGCCATTCAATGGCCGACACCCCTATTTATCTGATAAAAAAATCAAATTTTTGGGT
GTTGGCCATGCAATGACCGACACCTCTTTTTTCAGATAAAAATTTTAAATTT
Found at i:11499175 original size:32 final size:31
Alignment explanation
Indices: 11499138--11499201 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 31
11499128 AACAAGTGAT
*
11499138 AAAAAATTCAAATAGTTGGATGATCAAAAAAA
1 AAAAAAGTCAAATAGTTGGATGAT-AAAAAAA
11499170 AAAAAAGTCAAATAGTTGGATGATAAAAAAA
1 AAAAAAGTCAAATAGTTGGATGATAAAAAAA
11499201 A
1 A
11499202 GTCAAATAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 8 0.26
32 23 0.74
ACGTcount: A:0.61, C:0.05, G:0.14, T:0.20
Consensus pattern (31 bp):
AAAAAAGTCAAATAGTTGGATGATAAAAAAA
Found at i:11499204 original size:26 final size:26
Alignment explanation
Indices: 11499168--11499218 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11499158 TGATCAAAAA
11499168 AAAAAAAAGTCAAATAGTTGGATGAT
1 AAAAAAAAGTCAAATAGTTGGATGAT
11499194 AAAAAAAAGTCAAATAGTTGGATGA
1 AAAAAAAAGTCAAATAGTTGGATGA
11499219 CCATTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.55, C:0.04, G:0.20, T:0.22
Consensus pattern (26 bp):
AAAAAAAAGTCAAATAGTTGGATGAT
Found at i:11501303 original size:57 final size:56
Alignment explanation
Indices: 11501198--11501380 Score: 214
Period size: 55 Copynumber: 3.3 Consensus size: 56
11501188 TTTTATGAAT
* * * *
11501198 TTTAAATCGATTGTCATGTTAGAATAATG--CTTCTTTTGAATCGATTGTTTATATA
1 TTTAAATCGATTGTTATGTTGGAAT-ATGCTCTTCTTTTGAATCAATTGTTTATATG
*
11501253 TTTAAATCGATT-TTATGTTGGAATATTGCTTCTTCTTTTGAATAAATTGTTTATATG
1 TTTAAATCGATTGTTATGTTGGAATA-TGC-TCTTCTTTTGAATCAATTGTTTATATG
* * * *
11501310 TTTAAATAGATTGCTATGTTGGAATA--CTGCTTCTTTTGAATCCATTGTTAATATG
1 TTTAAATCGATTGTTATGTTGGAATATGCT-CTTCTTTTGAATCAATTGTTTATATG
11501365 TTTAAATCGATTGTTA
1 TTTAAATCGATTGTTA
11501381 CGTAGCACGT
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
53 1 0.01
54 13 0.12
55 50 0.45
57 34 0.31
58 12 0.11
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.49
Consensus pattern (56 bp):
TTTAAATCGATTGTTATGTTGGAATATGCTCTTCTTTTGAATCAATTGTTTATATG
Found at i:11505632 original size:27 final size:26
Alignment explanation
Indices: 11505571--11505638 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
11505561 ATAAAAAATC
11505571 AATA-AAAAATATTA-AATTTTAATAAA
1 AATAGAAAAA-ATTATAA-TTTAATAAA
* * *
11505597 AATATAAAAACTTATAATTTATTAAA
1 AATAGAAAAAATTATAATTTAATAAA
11505623 AATTAGAAAAAATTAT
1 AA-TAGAAAAAATTAT
11505639 TACAATTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 17 0.49
27 18 0.51
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (26 bp):
AATAGAAAAAATTATAATTTAATAAA
Found at i:11505671 original size:10 final size:9
Alignment explanation
Indices: 11505658--11505716 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 9
11505648 AAAATTTTAT
11505658 AAAAATCATA
1 AAAAAT-ATA
11505668 AAAAATA-A
1 AAAAATATA
*
11505676 TAAAATATA
1 AAAAATATA
11505685 TAAAAATATA
1 -AAAAATATA
* *
11505695 GAAATATAGA
1 -AAAAATATA
11505705 AAAAAT-TA
1 AAAAATATA
11505713 AAAA
1 AAAA
11505717 TTTTTATAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
8 12 0.30
9 7 0.17
10 21 0.52
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (9 bp):
AAAAATATA
Found at i:11505693 original size:8 final size:8
Alignment explanation
Indices: 11505655--11505717 Score: 54
Period size: 9 Copynumber: 7.1 Consensus size: 8
11505645 TGTAAAATTT
11505655 TATAAAAA
1 TATAAAAA
11505663 TCATAAAAAA
1 T-AT-AAAAA
11505673 TAATAAAATA
1 T-ATAAAA-A
11505683 TATAAAAA
1 TATAAAAA
*
11505691 TATAGAAA
1 TATAAAAA
11505699 TATAGAAAA
1 TATA-AAAA
*
11505708 AATTAAAAA
1 TA-TAAAAA
11505717 T
1 T
11505718 TTTTATAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
8 13 0.29
9 20 0.44
10 12 0.27
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (8 bp):
TATAAAAA
Found at i:11506014 original size:20 final size:19
Alignment explanation
Indices: 11505988--11506042 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
11505978 TTCTTTTATG
11505988 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
*
11506007 AGTTTTTAT--ATTTTTACA
1 A-TTTTTATAAAATTTTACA
*
11506025 ATATTTATAATAATTTTA
1 ATTTTTATAA-AATTTTA
11506043 TTTTTTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
17 6 0.21
18 9 0.31
19 1 0.03
20 13 0.45
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:11506031 original size:17 final size:18
Alignment explanation
Indices: 11506000--11506033 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11505990 TTTTATAAAA
*
11506000 TTTTACAAGTTTTTATAT
1 TTTTACAAGTATTTATAT
11506018 TTTTACAA-TATTTATA
1 TTTTACAAGTATTTATA
11506034 ATAATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTACAAGTATTTATAT
Found at i:11506926 original size:31 final size:30
Alignment explanation
Indices: 11506867--11506931 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
11506857 AATAGTTGGC
11506867 ATTTTTTATAATAAAAAAAAGATAAATTTA
1 ATTTTTTATAATAAAAAAAAGATAAATTTA
* * *
11506897 TATTTTTT-TGATAATAAAAATATATAATTTA
1 -ATTTTTTATAATAAAAAAAAGATA-AATTTA
11506928 ATTT
1 ATTT
11506932 CTCCTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
ATTTTTTATAATAAAAAAAAGATAAATTTA
Found at i:11507097 original size:9 final size:9
Alignment explanation
Indices: 11507085--11507209 Score: 92
Period size: 9 Copynumber: 13.0 Consensus size: 9
11507075 TTTTAGTATG
11507085 ATAATTTTT
1 ATAATTTTT
11507094 ATAATTTTTT
1 ATAA-TTTTT
* *
11507104 TTACGTTTTTT
1 ATA--ATTTTT
*
11507115 ATAAAATTTT
1 AT-AATTTTT
11507125 ATAATTTTT
1 ATAATTTTT
11507134 ATAATTTTTTT
1 ATAA--TTTTT
*
11507145 ACAATTTTT
1 ATAATTTTT
11507154 ATAATTTTTT
1 ATAA-TTTTT
*
11507164 ATAATTGTT
1 ATAATTTTT
11507173 A-ATATTTTT
1 ATA-ATTTTT
11507182 AT-ATTTTT
1 ATAATTTTT
*
11507190 ATTAAATTTTA
1 A-T-AATTTTT
11507201 ATAATTTTT
1 ATAATTTTT
11507210 TTATCATTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
8 8 0.09
9 40 0.43
10 23 0.25
11 20 0.22
12 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Found at i:11507132 original size:20 final size:19
Alignment explanation
Indices: 11507085--11507209 Score: 110
Period size: 19 Copynumber: 6.5 Consensus size: 19
11507075 TTTTAGTATG
*
11507085 ATAATTTTTATAATTTTTT
1 ATAATTTTTATAAATTTTT
* * *
11507104 TTACGTTTTTTATAAAATTTT
1 ATA--ATTTTTATAAATTTTT
*
11507125 ATAATTTTTATAATTTTTTT
1 ATAATTTTTATAA-ATTTTT
* *
11507145 ACAATTTTTATAATTTTTT
1 ATAATTTTTATAAATTTTT
* *
11507164 ATAATTGTTA-ATATTTTT
1 ATAATTTTTATAAATTTTT
*
11507182 AT-ATTTTTATTAAATTTTA
1 ATAATTTTTA-TAAATTTTT
11507201 ATAATTTTT
1 ATAATTTTT
11507210 TTATCATTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
17 6 0.07
18 8 0.10
19 33 0.39
20 22 0.26
21 15 0.18
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
ATAATTTTTATAAATTTTT
Found at i:11507142 original size:10 final size:10
Alignment explanation
Indices: 11507085--11507221 Score: 99
Period size: 10 Copynumber: 14.0 Consensus size: 10
11507075 TTTTAGTATG
11507085 ATAA-TTTTT
1 ATAATTTTTT
11507094 ATAATTTTTT
1 ATAATTTTTT
* *
11507104 TTACGTTTTTT
1 ATA-ATTTTTT
**
11507115 ATAAAATTTT
1 ATAATTTTTT
11507125 ATAA-TTTTT
1 ATAATTTTTT
11507134 ATAATTTTTT
1 ATAATTTTTT
*
11507144 -TACAATTTTT
1 ATA-ATTTTTT
11507154 ATAATTTTTT
1 ATAATTTTTT
* *
11507164 ATAATTGTTA
1 ATAATTTTTT
11507174 AT-A-TTTTT
1 ATAATTTTTT
11507182 AT-A-TTTTT
1 ATAATTTTTT
* *
11507190 ATTAAATTTTA
1 A-TAATTTTTT
11507201 ATAATTTTTTT
1 ATAA-TTTTTT
*
11507212 ATCATTTTTT
1 ATAATTTTTT
11507222 GTCACATGTC
Statistics
Matches: 102, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
8 12 0.12
9 16 0.16
10 52 0.51
11 22 0.22
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:11507732 original size:85 final size:85
Alignment explanation
Indices: 11507576--11507780 Score: 202
Period size: 85 Copynumber: 2.4 Consensus size: 85
11507566 TTCAAGTATT
* * * *
11507576 CAATTGAGTGCAAAAAAAAGGGATTTAATTATTTTTTTGAAAAAATTTGAGAGATTTTTTTTTAT
1 CAATTGAGTGCAAAAAAAAAGGACTTAATTATTTTCTTGAAAAAATTTGAGAGACTTTTTTTTAT
*
11507641 ATTTTTACAGTTCAAACACC
66 AATTTTACAGTTCAAACACC
* * * *
11507661 CAATTGAGTGGAAAAAAAAAGG-CTTAATTGCTTTTCTTGAAATAGTTTGAGA-ACTTTTTTTTA
1 CAATTGAGTGCAAAAAAAAAGGACTTAATT-ATTTTCTTGAAAAAATTTGAGAGACTTTTTTTTA
* * * ** *
11507724 TACATTTTAGAAATTTAAGTATC
65 TA-ATTTTA-CAGTTCAAACACC
*
11507747 CAATTGAG-G-AGAAAAAAAGGACTTAATTGATTTT
1 CAATTGAGTGCAAAAAAAAAGGACTTAATT-ATTTT
11507781 TTTTAAATTT
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
84 28 0.28
85 56 0.57
86 15 0.15
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (85 bp):
CAATTGAGTGCAAAAAAAAAGGACTTAATTATTTTCTTGAAAAAATTTGAGAGACTTTTTTTTAT
AATTTTACAGTTCAAACACC
Found at i:11508025 original size:19 final size:18
Alignment explanation
Indices: 11507997--11508032 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
11507987 TATATTTTCA
*
11507997 ATTTTTATAACTTTTAAT
1 ATTTTTATAAATTTTAAT
11508015 ATTTTTAATAAATTTTAA
1 ATTTTT-ATAAATTTTAA
11508033 AGAATTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTATAAATTTTAAT
Found at i:11513478 original size:27 final size:30
Alignment explanation
Indices: 11513432--11513486 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
11513422 ATTTATGATA
11513432 TTTTTATATTTAACACTTCAAA-AAATTAT
1 TTTTTATATTTAACACTTCAAATAAATTAT
11513461 TTTTTATATTTAA-A-TTCAAATAAATT
1 TTTTTATATTTAACACTTCAAATAAATT
11513487 GTAAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 6 0.24
28 6 0.24
29 13 0.52
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (30 bp):
TTTTTATATTTAACACTTCAAATAAATTAT
Found at i:11520949 original size:320 final size:320
Alignment explanation
Indices: 11520354--11521000 Score: 1046
Period size: 320 Copynumber: 2.0 Consensus size: 320
11520344 GCTCGTATAA
* *
11520354 AGTGTAAGGATAAGTCACTCTAATTAACGTTTGAAAGCTTGAGGTGTTTCCTTGAATTGAATAAA
1 AGTGTGAGGATAAGTCACTCTAATTAACGATTGAAAGCTTGAGGTGTTTCCTTGAATTGAATAAA
* * * * * *
11520419 GAAGTGTAAAAGTTCAACCAATCAGAGATGCACTATCTCCAATAAGCAAGTCAACTAGAACTACA
66 GAAGTGCAAAAGCTCAACAAATCAAAGATGCACTATCTCCAATAAGCAAGCCAACTAGAACCACA
* ** * *
11520484 ATGAGTGATCCTATCACATTTAAGCATAAGACAATTTATGATTTATTTATGCCTCTCATTTATTA
131 ATGAGTAATCCTATCACATGCAAGCATAACACAACTTATGATTTATTTATGCCTCTCATTTATTA
* *
11520549 TGGAAGAAAGAAACTCAAAAACACATATGAGAACTTAACATCTAAATTCGAAAGAGGTCTATGAT
196 TGGAAGAAAGAAACTCAAAAACACATATGAGAACTTAACATATAAAGTCGAAAGAGGTCTATGAT
11520614 GAGTCATTTGCTCATACCCAACTTGGCGAACTAC-CTTACACATCGAATATACCTACATTG
261 GAGTCATTTGCTCATACCCAACTTGGCGAACTACTC-TACACATCGAATATACCTACATTG
* * *
11520674 AGTGTGAGGATATGTCACTCTGATTAACGATTGAAAGGTTGAGGTGTTTCCTTGAATTGAATAAA
1 AGTGTGAGGATAAGTCACTCTAATTAACGATTGAAAGCTTGAGGTGTTTCCTTGAATTGAATAAA
* *
11520739 GGAGTGCAAAAGCTCAACAAATCAAATATGCACTATCTCCAATAAGCAAGCCAACTAGAACCACA
66 GAAGTGCAAAAGCTCAACAAATCAAAGATGCACTATCTCCAATAAGCAAGCCAACTAGAACCACA
* *
11520804 ATGAGTAATCCTATCACATGCAAGTATAACACAACTTATTATTTATTTCA-GCCTCTCATTTATT
131 ATGAGTAATCCTATCACATGCAAGCATAACACAACTTATGATTTATTT-ATGCCTCTCATTTATT
* *
11520868 ATGGAAGAAAGAAACTCGAAAACACATATGAGAACTTAACATATAAAGTCGAAGGAGGTCTATGA
195 ATGGAAGAAAGAAACTCAAAAACACATATGAGAACTTAACATATAAAGTCGAAAGAGGTCTATGA
11520933 TGAGTCATTTGCTCATACCCAACTTGGCGAACTACTCTACACATCGAATATACCTACATTG
260 TGAGTCATTTGCTCATACCCAACTTGGCGAACTACTCTACACATCGAATATACCTACATTG
11520994 AGTGTGA
1 AGTGTGA
11521001 ATCTCTATTG
Statistics
Matches: 301, Mismatches: 24, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
320 299 0.99
321 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (320 bp):
AGTGTGAGGATAAGTCACTCTAATTAACGATTGAAAGCTTGAGGTGTTTCCTTGAATTGAATAAA
GAAGTGCAAAAGCTCAACAAATCAAAGATGCACTATCTCCAATAAGCAAGCCAACTAGAACCACA
ATGAGTAATCCTATCACATGCAAGCATAACACAACTTATGATTTATTTATGCCTCTCATTTATTA
TGGAAGAAAGAAACTCAAAAACACATATGAGAACTTAACATATAAAGTCGAAAGAGGTCTATGAT
GAGTCATTTGCTCATACCCAACTTGGCGAACTACTCTACACATCGAATATACCTACATTG
Found at i:11526210 original size:31 final size:31
Alignment explanation
Indices: 11526166--11526234 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
11526156 GTACCAACTT
*
11526166 AAAAAAGTGTCAAGTTT-AGGCACCAAATTAGG
1 AAAAAAGTATCAAGTTTGA-GCACCAAATT-GG
*
11526198 AAAAAA-TATCAAGTTTGAGTACCAAATTGG
1 AAAAAAGTATCAAGTTTGAGCACCAAATTGG
11526228 ACAAAAA
1 A-AAAAA
11526235 AAATTTAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
30 3 0.09
31 23 0.70
32 7 0.21
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (31 bp):
AAAAAAGTATCAAGTTTGAGCACCAAATTGG
Found at i:11530363 original size:22 final size:22
Alignment explanation
Indices: 11530335--11530379 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
11530325 TTAAAACTTA
11530335 ATTTATTTTTGCCATTTGCTTT
1 ATTTATTTTTGCCATTTGCTTT
11530357 ATTTATTTTTGCCATTTGCTTT
1 ATTTATTTTTGCCATTTGCTTT
11530379 A
1 A
11530380 AATCTAGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.16, C:0.13, G:0.09, T:0.62
Consensus pattern (22 bp):
ATTTATTTTTGCCATTTGCTTT
Found at i:11531098 original size:9 final size:9
Alignment explanation
Indices: 11531063--11531099 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
11531053 TTTGTTAGTG
11531063 TTTAATTTGT
1 TTTAA-TTGT
*
11531073 TTTAATTTT
1 TTTAATTGT
11531082 TTTAATTGT
1 TTTAATTGT
11531091 TTTAATTGT
1 TTTAATTGT
11531100 GGGTCCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (9 bp):
TTTAATTGT
Found at i:11531136 original size:17 final size:17
Alignment explanation
Indices: 11531114--11531155 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
11531104 CCCAAAAGTT
*
11531114 TTTTAAATGTTTTTTAA
1 TTTTAAATATTTTTTAA
*
11531131 TTTTAATTATTTTTTAA
1 TTTTAAATATTTTTTAA
*
11531148 GTTTAAAT
1 TTTTAAAT
11531156 TTATTTGTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTAAATATTTTTTAA
Found at i:11531156 original size:18 final size:18
Alignment explanation
Indices: 11531123--11531161 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
11531113 TTTTTAAATG
*
11531123 TTTTTTAATTTTAA-TTA
1 TTTTTTAATTTAAATTTA
11531140 TTTTTTAAGTTTAAATTTA
1 TTTTTTAA-TTTAAATTTA
11531159 TTT
1 TTT
11531162 GTTGCGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 5 0.26
19 6 0.32
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTTAATTTAAATTTA
Found at i:11534540 original size:18 final size:20
Alignment explanation
Indices: 11534501--11534537 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11534491 TAAAATTAAG
*
11534501 GTAATATAATTCTACAAAAT
1 GTAATATAATTATACAAAAT
11534521 GTAATATAA-TATACAAA
1 GTAATATAATTATACAAA
11534538 TGTTAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.32
Consensus pattern (20 bp):
GTAATATAATTATACAAAAT
Found at i:11535407 original size:16 final size:18
Alignment explanation
Indices: 11535385--11535427 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
11535375 ATTTGAAACT
11535385 TTCCCCAAATTC-TAAAA
1 TTCCCCAAATTCGTAAAA
*
11535402 -TCCCC-AACTCGTAAAA
1 TTCCCCAAATTCGTAAAA
11535418 TTCCCCAAAT
1 TTCCCCAAAT
11535428 CTTGAAGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 5 0.24
18 2 0.10
ACGTcount: A:0.37, C:0.35, G:0.02, T:0.26
Consensus pattern (18 bp):
TTCCCCAAATTCGTAAAA
Found at i:11541375 original size:7 final size:7
Alignment explanation
Indices: 11541360--11541389 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
11541350 GTAAAAATAT
11541360 AATTTTA
1 AATTTTA
*
11541367 AATTATA
1 AATTTTA
11541374 AATTTTA
1 AATTTTA
11541381 AATTTTA
1 AATTTTA
11541388 AA
1 AA
11541390 AATCTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AATTTTA
Found at i:11541924 original size:25 final size:25
Alignment explanation
Indices: 11541895--11541972 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
11541885 ATTGTACAAA
*
11541895 GATTTTAGTATCTTTACAATAATAT
1 GATTTTAGAATCTTTACAATAATAT
* *
11541920 GATTTTCA-CA-C-TCAC-A-AATAAT
1 GATTTT-AGAATCTTTACAATAAT-AT
*
11541942 GATTTTAGAATATTTACAATAATAT
1 GATTTTAGAATCTTTACAATAATAT
11541967 GATTTT
1 GATTTT
11541973 CATTACTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
21 4 0.10
22 10 0.24
23 3 0.07
24 4 0.10
25 16 0.39
26 4 0.10
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (25 bp):
GATTTTAGAATCTTTACAATAATAT
Found at i:11549216 original size:26 final size:26
Alignment explanation
Indices: 11549187--11549256 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
11549177 ATTTTACTCC
* *
11549187 ATTAATTTAAATTTAAATTCGATGGG
1 ATTAATTTAAATTTAAATTCAATGCG
* *
11549213 ATT-ATTTAAATTTAAATTTAATTCG
1 ATTAATTTAAATTTAAATTCAATGCG
*
11549238 ATTAATTTGAATTTAAATT
1 ATTAATTTAAATTTAAATT
11549257 TAATTTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 21 0.55
26 17 0.45
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (26 bp):
ATTAATTTAAATTTAAATTCAATGCG
Found at i:11549257 original size:26 final size:26
Alignment explanation
Indices: 11549187--11549261 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
11549177 ATTTTACTCC
** **
11549187 ATTAATTTAAATTTAAATTCGATGGG
1 ATTAATTTAAATTTAAATTTAATTCG
11549213 ATT-ATTTAAATTTAAATTTAATTCG
1 ATTAATTTAAATTTAAATTTAATTCG
*
11549238 ATTAATTTGAATTTAAATTTAATT
1 ATTAATTTAAATTTAAATTTAATT
11549262 TAATTTAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
25 21 0.49
26 22 0.51
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.49
Consensus pattern (26 bp):
ATTAATTTAAATTTAAATTTAATTCG
Found at i:11549263 original size:5 final size:5
Alignment explanation
Indices: 11549216--11549272 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
11549206 CGATGGGATT
**
11549216 ATTTAA ATTTAA ATTTA ATTCG A-TTA ATTTGA ATTTAA ATTTA ATTTA
1 ATTT-A ATTT-A ATTTA ATTTA ATTTA ATTT-A ATTT-A ATTTA ATTTA
11549264 ATTTA ATTT
1 ATTTA ATTT
11549273 GATTATAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
4 2 0.05
5 22 0.50
6 20 0.45
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (5 bp):
ATTTA
Found at i:11549281 original size:27 final size:26
Alignment explanation
Indices: 11549216--11549274 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
11549206 CGATGGGATT
* *
11549216 ATTTAAATTTAAATTTAATTCGATTA
1 ATTTGAATTTAAATTTAATTCAATTA
*
11549242 ATTTGAATTTAAATTTAATTTAATTTA
1 ATTTGAATTTAAATTTAATTCAA-TTA
11549269 ATTTGA
1 ATTTGA
11549275 TTATAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (26 bp):
ATTTGAATTTAAATTTAATTCAATTA
Found at i:11553704 original size:18 final size:18
Alignment explanation
Indices: 11553681--11553739 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
11553671 AAAATTTGTG
11553681 ATAATTATATATTTAAAA
1 ATAATTATATATTTAAAA
*
11553699 ATAATTATA-ATTTAATTA
1 ATAATTATATATTTAA-AA
*
11553717 ACAATTAT-TATTTAAAA
1 ATAATTATATATTTAAAA
*
11553734 AAAATT
1 ATAATT
11553740 TTGCAATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 12 0.34
18 23 0.66
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAATTATATATTTAAAA
Found at i:11571216 original size:12 final size:12
Alignment explanation
Indices: 11571197--11571230 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
11571187 CAAAAGTAAT
11571197 CAAA-GAAGTGC
1 CAAAGGAAGTGC
11571208 CAAAGGAAGTGC
1 CAAAGGAAGTGC
*
11571220 CAAAGAAAGTG
1 CAAAGGAAGTG
11571231 GGAGTTGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.47, C:0.15, G:0.29, T:0.09
Consensus pattern (12 bp):
CAAAGGAAGTGC
Found at i:11576024 original size:16 final size:15
Alignment explanation
Indices: 11575956--11576026 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
11575946 AGATTAGTTA
* *
11575956 TTTTATATACATATT
1 TTTTATACATATATT
*
11575971 TTTTA-ACATTGTATAT
1 TTTTATACA-TATAT-T
11575987 TTTT-TACAT-T-TT
1 TTTTATACATATATT
11575999 TTTATATACATATATAT
1 TTT-TATACATATAT-T
11576016 TTTTATACATA
1 TTTTATACATA
11576027 GATTAGTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
12 4 0.09
13 2 0.04
14 8 0.18
15 10 0.22
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.59
Consensus pattern (15 bp):
TTTTATACATATATT
Found at i:11593015 original size:20 final size:21
Alignment explanation
Indices: 11592990--11593035 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
11592980 CTTAGGGTGT
11592990 AATTA-GGTTT-AGGATTTTTA
1 AATTAGGGTTTAAGG-TTTTTA
11593010 AATTAGGGTTTAAGGTTTTTA
1 AATTAGGGTTTAAGGTTTTTA
11593031 AATTA
1 AATTA
11593036 TAATTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 5 0.21
21 16 0.67
22 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
AATTAGGGTTTAAGGTTTTTA
Found at i:11593298 original size:18 final size:19
Alignment explanation
Indices: 11593252--11593302 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
11593242 ATTTTTTTGT
11593252 TTTATT-TTTATTCAAATTA
1 TTTATTATTTATTCAAA-TA
*
11593271 TTTAATTATTTATTGAAA-A
1 TTT-ATTATTTATTCAAATA
11593290 TTTATTATTTATT
1 TTTATTATTTATT
11593303 TTTAAATTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 10 0.34
19 7 0.24
20 3 0.10
21 9 0.31
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTATTATTTATTCAAATA
Found at i:11593393 original size:14 final size:15
Alignment explanation
Indices: 11593376--11593405 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11593366 AAGAATTAAA
11593376 TTTAT-TTTTATTTT
1 TTTATGTTTTATTTT
11593390 TTTATGTTTTATTTT
1 TTTATGTTTTATTTT
11593405 T
1 T
11593406 ATTCAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTATGTTTTATTTT
Found at i:11593427 original size:21 final size:22
Alignment explanation
Indices: 11593403--11593447 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
11593393 ATGTTTTATT
*
11593403 TTTATTCAAATTAT-TTAATTA
1 TTTATTCAAAATATATTAATTA
* *
11593424 TTTATTGAAAATATATTATTTA
1 TTTATTCAAAATATATTAATTA
11593446 TT
1 TT
11593448 GTTAAATTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTATTCAAAATATATTAATTA
Found at i:11593446 original size:145 final size:143
Alignment explanation
Indices: 11593028--11593739 Score: 1008
Period size: 139 Copynumber: 5.0 Consensus size: 143
11593018 TTTAAGGTTT
* * * *
11593028 TTAAATTATAATTTTATTATTTATTTTATATATTTTAGGTAAAAAAACTCATAATAAATTGAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACCCATAACAAATTGAAAG
*
11593093 AATTAA-TTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAAATATTTAATTA--T-TTGAAAAT
66 AATTAATTTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAAAT
11593154 TTATTATTTATTG
131 TTATTATTTATTG
* * * *
11593167 TTAAATTATAATTTTAATATTTATTTTATATATTTTAAGT-AAAAAATCCATAAC-----GAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACCCATAACAAATTGAAAG
11593226 AATTAAATTTATTTTTA-TTTTTT-TGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAA
66 AATT-AATTT-TTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAA
*
11593289 ATTTATTATTTATTT
129 ATTTATTATTTATTG
* * *
11593304 TTAAATTAGAATTTTAGTATTTATTTTATATATGTTAGGTAAAAAAACTCATAACAAATTGAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACCCATAACAAATTGAAAG
*
11593369 AATTAAATTTATTTTTATTTTTTTATGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAA
66 AATT-AATTT-TTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAA
*
11593434 ATATATTATTTATTG
129 ATTTATTATTTATTG
* * *
11593449 TTAAATTACAATTTTAGCATTTATTTTATATATTTTAGGT--AAAAACCCATAACAGATTAAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACCCATAACAAATTGAAAG
*
11593512 AATT-ATTTTTTTTA-TTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTCAAAAT
66 AATTAATTTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAAAT
*
11593575 TTGTTATTTATTG
131 TTATTATTTATTG
* *
11593588 TTAAATTACCATTTTAGTATTTATTTAATATATTTTAGGTAAAAAAAACCCATAACAAATTGAAA
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGT-AAAAAAACCCATAACAAATTGAAA
* *
11593653 GAATTAATTTTTTTATTTTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTT-TTATAA
65 GAATTAATTTTTTT-TATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATT-GAA
*
11593717 ACATTTATTACTTATTG
128 A-ATTTATTATTTATTG
11593734 TTAAAT
1 TTAAAT
11593740 AGCCATTATT
Statistics
Matches: 517, Mismatches: 34, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
133 9 0.02
134 31 0.06
135 8 0.02
136 7 0.01
137 56 0.11
138 23 0.04
139 133 0.26
140 6 0.01
141 4 0.01
142 25 0.05
143 54 0.10
144 9 0.02
145 133 0.26
146 19 0.04
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.54
Consensus pattern (143 bp):
TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACCCATAACAAATTGAAAG
AATTAATTTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAAAT
TTATTATTTATTG
Found at i:11593604 original size:284 final size:278
Alignment explanation
Indices: 11593028--11593739 Score: 1058
Period size: 284 Copynumber: 2.5 Consensus size: 278
11593018 TTTAAGGTTT
* * *
11593028 TTAAATTATAATTTTATTATTTATTTTATATATTTTAGGTAAAAAAACTCATAATAAATTGAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACTCATAACAAATTGAAAG
*
11593093 AATTAA-TTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAAATATTTAATTA--TTTGAAAATT
66 AATTAATTTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTTTGAAAATT
* * *
11593155 TATTATTTATTGTTAAATTATAATTTTAATATTTATTTTATATATTTTAAGTAAAAAATCCATAA
131 TATTATTTATTGTTAAATTACAATTTTAACATTTATTTTATATATTTTAAGTAAAAAACCCATAA
11593220 CGAAAGAATTAAATTTATTTTTATTTTTTTGTTTTATTTTTATTCAAATTATTTAATTATTTATT
196 CGAAAGAATT-AATTTATTTTTATTTTTTTGTTTTATTTTTATTCAAATTATTTAATTATTTATT
* *
11593285 GAAAATTTATTATTTATTT
260 CAAAATTTATTATTTATTG
* *
11593304 TTAAATTAGAATTTTAGTATTTATTTTATATATGTTAGGTAAAAAAACTCATAACAAATTGAAAG
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACTCATAACAAATTGAAAG
*
11593369 AATTAAATTTATTTTTATTTTTTTATGTTTTATTTTTATTCAAATTATTTAATTATTTATTGAAA
66 AATT-AATTT-TTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTT-TTGAAA
* * *
11593434 ATATATTATTTATTGTTAAATTACAATTTTAGCATTTATTTTATATATTTTAGGT-AAAAACCCA
128 ATTTATTATTTATTGTTAAATTACAATTTTAACATTTATTTTATATATTTTAAGTAAAAAACCCA
11593498 TAACAGATTAAAAGAATT-ATTT-TTTTTATTTTTTCTGTTTTATTTTTATTCAAATTATTTAAT
193 TAAC-G----AAAGAATTAATTTATTTTTATTTTTT-TGTTTTATTTTTATTCAAATTATTTAAT
*
11593561 TATTTATTCAAAATTTGTTATTTATTG
252 TATTTATTCAAAATTTATTATTTATTG
* * *
11593588 TTAAATTACCATTTTAGTATTTATTTAATATATTTTAGGTAAAAAAAACCCATAACAAATTGAAA
1 TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGT-AAAAAAACTCATAACAAATTGAAA
* *
11593653 GAATTAATTTTTTTATTTTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTTTATAAA
65 GAATTAATTTTTTT-TATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTTT-GAAA
*
11593718 CATTTATTACTTATTGTTAAAT
128 -ATTTATTATTTATTGTTAAAT
11593740 AGCCATTATT
Statistics
Matches: 395, Mismatches: 25, Indels: 23
0.89 0.06 0.05
Matches are distributed among these distances:
276 65 0.16
277 2 0.01
278 2 0.01
279 42 0.11
281 13 0.03
282 57 0.14
283 18 0.05
284 141 0.36
285 47 0.12
286 8 0.02
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.54
Consensus pattern (278 bp):
TTAAATTACAATTTTAGTATTTATTTTATATATTTTAGGTAAAAAAACTCATAACAAATTGAAAG
AATTAATTTTTTTTATTTTTTTCTGTTTTATTTTTATTCAAATTATTTAATTATTTTTGAAAATT
TATTATTTATTGTTAAATTACAATTTTAACATTTATTTTATATATTTTAAGTAAAAAACCCATAA
CGAAAGAATTAATTTATTTTTATTTTTTTGTTTTATTTTTATTCAAATTATTTAATTATTTATTC
AAAATTTATTATTTATTG
Found at i:11594172 original size:20 final size:20
Alignment explanation
Indices: 11594147--11594184 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11594137 ATTGGATTCT
11594147 TTCTTGGTTGTGCTTCTTCC
1 TTCTTGGTTGTGCTTCTTCC
11594167 TTCTTGGTTGTGCTTCTT
1 TTCTTGGTTGTGCTTCTT
11594185 GTTCATCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.21, T:0.58
Consensus pattern (20 bp):
TTCTTGGTTGTGCTTCTTCC
Found at i:11594480 original size:15 final size:15
Alignment explanation
Indices: 11594457--11594487 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11594447 GTTATTTCTA
11594457 TACAATTTAGTTTAG
1 TACAATTTAGTTTAG
*
11594472 TACAGTTTAGTTTAG
1 TACAATTTAGTTTAG
11594487 T
1 T
11594488 TTGATGCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (15 bp):
TACAATTTAGTTTAG
Found at i:11597132 original size:43 final size:43
Alignment explanation
Indices: 11597072--11597176 Score: 158
Period size: 43 Copynumber: 2.5 Consensus size: 43
11597062 AGATGAATTG
*
11597072 TATAA-TTAATAACATGTCACGATATTAACAATAGTCAAGTAA
1 TATAATTTAATAACATGTCACGATATTAACAAGAGTCAAGTAA
* * * *
11597114 TATAATTTAATAACATGTCACGATATTAGCACGGGTTAAGTAA
1 TATAATTTAATAACATGTCACGATATTAACAAGAGTCAAGTAA
11597157 TATAATTTAATAACATGTCA
1 TATAATTTAATAACATGTCA
11597177 AGGAATAACA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 5 0.09
43 52 0.91
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (43 bp):
TATAATTTAATAACATGTCACGATATTAACAAGAGTCAAGTAA
Found at i:11598712 original size:3 final size:3
Alignment explanation
Indices: 11598698--11598732 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
11598688 ACTAAATAAT
*
11598698 TAC TAG TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
11598733 ACAAACTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:11598810 original size:12 final size:11
Alignment explanation
Indices: 11598793--11598831 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
11598783 ATAAATTAAC
11598793 CTTCTTATCCTT
1 CTTCTT-TCCTT
*
11598805 CTTCTTTCTTT
1 CTTCTTTCCTT
11598816 CTTTCTTTCCTT
1 C-TTCTTTCCTT
11598828 CTTC
1 CTTC
11598832 CTTCTCTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (11 bp):
CTTCTTTCCTT
Found at i:11605131 original size:11 final size:11
Alignment explanation
Indices: 11605114--11605162 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
11605104 CTTTTTTAAA
11605114 AAAAAGAAAA-
1 AAAAAGAAAAG
11605124 AGAAAAGAAAAG
1 A-AAAAGAAAAG
*
11605136 AAGAAGAAAAG
1 AAAAAGAAAAG
*
11605147 AAGAAGAAAAG
1 AAAAAGAAAAG
11605158 AAAAA
1 AAAAA
11605163 AGGAAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
10 1 0.03
11 33 0.94
12 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:11605168 original size:16 final size:16
Alignment explanation
Indices: 11605111--11605178 Score: 74
Period size: 16 Copynumber: 4.5 Consensus size: 16
11605101 CATCTTTTTT
*
11605111 AAAA-AAAAGAAAAAG
1 AAAAGAAAAGAAGAAG
11605126 AAAAGAAAAGAAGAAG
1 AAAAGAAAAGAAGAAG
11605142 AAAAGAAGAAGAA-AAG
1 AAAAGAA-AAGAAGAAG
*
11605158 -AAA-AAAGGAAGAA-
1 AAAAGAAAAGAAGAAG
11605171 AAAAGAAA
1 AAAAGAAA
11605179 GTCAAGATGA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
13 4 0.09
14 7 0.15
15 10 0.22
16 20 0.43
17 5 0.11
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAGAAG
Found at i:11605185 original size:27 final size:27
Alignment explanation
Indices: 11605115--11605177 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
11605105 TTTTTTAAAA
*
11605115 AAAAGAAAAAGAAAAGAAAAGAAGAAG
1 AAAAGAAGAAGAAAAGAAAAGAAGAAG
11605142 AAAAGAAGAAGAAAAGAAAA-AAGGAAG
1 AAAAGAAGAAGAAAAGAAAAGAA-GAAG
11605169 AAAA-AAGAA
1 AAAAGAAGAA
11605178 AGTCAAGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 7 0.21
27 27 0.79
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (27 bp):
AAAAGAAGAAGAAAAGAAAAGAAGAAG
Found at i:11606054 original size:11 final size:11
Alignment explanation
Indices: 11606038--11606081 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
11606028 TATTTCACCC
11606038 AAAAAAAAAAG
1 AAAAAAAAAAG
*
11606049 AAAAAAGAAAG
1 AAAAAAAAAAG
*
11606060 -AAAAAAGAAG
1 AAAAAAAAAAG
11606070 AAAAAGAAAAAG
1 AAAAA-AAAAAG
11606082 GAGAGGTCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 8 0.30
11 14 0.52
12 5 0.19
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:11606065 original size:21 final size:20
Alignment explanation
Indices: 11606039--11606078 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
11606029 ATTTCACCCA
11606039 AAAAAAAAAGAAAAAAGAAAG
1 AAAAAAAAAG-AAAAAGAAAG
*
11606060 AAAAAAGAAGAAAAAGAAA
1 AAAAAAAAAGAAAAAGAAA
11606079 AAGGAGAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAGAAAAAGAAAG
Found at i:11606556 original size:106 final size:108
Alignment explanation
Indices: 11606342--11606599 Score: 335
Period size: 106 Copynumber: 2.4 Consensus size: 108
11606332 CCATTCTTTA
* * * *
11606342 TTCAAGCATTTTTGCATTGAAATAATAGTAAGTGGACCAATGATTTTTAATCTTTTCATTCATGC
1 TTCAAGCATTTTTGCATTGAAATAACAGTTAGTGGACTAATGA---TT-ATCTTTTCATTCACGC
* *
11606407 GACATTTTCCTCCAATACAATTCAATTTTATCCACCTTACAA-CCTT
62 GACATTTACCTCCAATAAAATTCAATTTTATCCACCTTACAACCCTT
*
11606453 GTTCAAGCATGTTTGCATTGAAATAACAGTTAGTGGACTAATGA-T-TCTTTTCATTCACGCGAG
1 -TTCAAGCATTTTTGCATTGAAATAACAGTTAGTGGACTAATGATTATCTTTTCATTCACGCGA-
*
11606516 C-TTTACCTCTAATAAAATTCAATTTTATCCACCTTACAACCCTT
64 CATTTACCTCCAATAAAATTCAATTTTATCCACCTTACAACCCTT
* * *
11606560 TTCAAGCATTTTTGCATTGAAATGACGGTTAGTGGTCTAA
1 TTCAAGCATTTTTGCATTGAAATAACAGTTAGTGGACTAA
11606600 CGATATAATG
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
106 87 0.66
107 5 0.04
108 1 0.01
112 39 0.30
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (108 bp):
TTCAAGCATTTTTGCATTGAAATAACAGTTAGTGGACTAATGATTATCTTTTCATTCACGCGACA
TTTACCTCCAATAAAATTCAATTTTATCCACCTTACAACCCTT
Found at i:11607045 original size:49 final size:49
Alignment explanation
Indices: 11606983--11607369 Score: 208
Period size: 49 Copynumber: 7.9 Consensus size: 49
11606973 ACAGGTTTGA
** *
11606983 AGGGAAAGATTGAAGCCGTAATGGCAAATCTAATACCCTAGAGATATGG
1 AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* * * **
11607032 AGGGAAAGGTTGAAGCCGTAACGGCAAACCTTGTACCTTAGAGACGT-G
1 AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* * ** *
11607080 ATGGGAAAGATTGAATCCGCAATGATAAATCTTGTACCTTGGAGATATGG
1 A-GGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* * * * * *** * * **
11607130 AAGGAAAGGTTGAAGCAGCAACGATGAACCTTATACCTTAGAGACGT-G
1 AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* * * *** * *
11607178 ATGAGAAAGATTGAAGCCGCAACGATGAATCTTGTACCATGGAGATATGG
1 A-GGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* * * * * * **
11607228 AGGGAAAGGTTGAAGCCGCAATGACAAACCTTATACCTAAGAGACGT-G
1 AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
* *** * *
11607276 ATGGGAAAGATTGAAGCCGCAACATCGAAT-TGTGTACCAT-GAAGATATGG
1 A-GGGAAAGATTGAAGCCGTAATGGCAAATCT-TGTACCTTAG-AGATATGG
* ** * * * *
11607326 AGGGAAAGGTTGAAGCCACAAAGACGAACCTTGTACCTTAGAGA
1 AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGA
11607370 CGTGATGCGA
Statistics
Matches: 259, Mismatches: 69, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
48 8 0.03
49 243 0.94
50 8 0.03
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (49 bp):
AGGGAAAGATTGAAGCCGTAATGGCAAATCTTGTACCTTAGAGATATGG
Found at i:11607160 original size:98 final size:98
Alignment explanation
Indices: 11606984--11607416 Score: 514
Period size: 98 Copynumber: 4.4 Consensus size: 98
11606974 CAGGTTTGAA
* ** ** * * *
11606984 GGGAAAGATTGAAGCCGTAATGGCAAATCTAATACCCTAGAGATATGGAGGGAAAGGTTGAAGCC
1 GGGAAAGATTGAAGCCGCAATGATAAATCTTGTACCATGGAGATATGGAGGGAAAGGTTGAAGCA
* * *
11607049 GTAACGGCAAACCTTGTACCTTAGAGACGTGAT
66 GCAACGACAAACCTTATACCTTAGAGACGTGAT
* * *
11607082 GGGAAAGATTGAATCCGCAATGATAAATCTTGTACCTTGGAGATATGGAAGGAAAGGTTGAAGCA
1 GGGAAAGATTGAAGCCGCAATGATAAATCTTGTACCATGGAGATATGGAGGGAAAGGTTGAAGCA
**
11607147 GCAACGATGAACCTTATACCTTAGAGACGTGAT
66 GCAACGACAAACCTTATACCTTAGAGACGTGAT
* * * *
11607180 GAGAAAGATTGAAGCCGCAACGATGAATCTTGTACCATGGAGATATGGAGGGAAAGGTTGAAGCC
1 GGGAAAGATTGAAGCCGCAATGATAAATCTTGTACCATGGAGATATGGAGGGAAAGGTTGAAGCA
* *
11607245 GCAATGACAAACCTTATACCTAAGAGACGTGAT
66 GCAACGACAAACCTTATACCTTAGAGACGTGAT
* * *
11607278 GGGAAAGATTGAAGCCGCAA-CATCGAAT-TGTGTACCATGAAGATATGGAGGGAAAGGTTGAAG
1 GGGAAAGATTGAAGCCGCAATGAT-AAATCT-TGTACCATGGAGATATGGAGGGAAAGGTTGAAG
* * *
11607341 CCA-CAAAGACGAACCTTGTACCTTAGAGACGTGAT
64 -CAGCAACGACAAACCTTATACCTTAGAGACGTGAT
* * * *
11607376 GCGAAAGATTGAAGCTGCAA-CAGTGAATCTTGTACCATGGA
1 GGGAAAGATTGAAGCCGCAATGA-TAAATCTTGTACCATGGA
11607417 AAAGGAGGAG
Statistics
Matches: 293, Mismatches: 37, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
97 3 0.01
98 287 0.98
99 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.21
Consensus pattern (98 bp):
GGGAAAGATTGAAGCCGCAATGATAAATCTTGTACCATGGAGATATGGAGGGAAAGGTTGAAGCA
GCAACGACAAACCTTATACCTTAGAGACGTGAT
Found at i:11607324 original size:196 final size:196
Alignment explanation
Indices: 11607023--11607416 Score: 580
Period size: 196 Copynumber: 2.0 Consensus size: 196
11607013 TAATACCCTA
* * * *
11607023 GAGATATGGAGGGAAAGGTTGAAGCCGTAACGGCAAACCTTGTACCTTAGAGACGTGATGGGAAA
1 GAGATATGGAGGGAAAGGTTGAAGCCGCAACGACAAACCTTATACCTAAGAGACGTGATGGGAAA
* * * * *
11607088 GATTGAATCCGCAATGATAAATCTTGTACCTTGGAGATATGGAAGGAAAGGTTGAAG-CAGCAAC
66 GATTGAAGCCGCAATCATAAATCTTGTACCATGAAGATATGGAAGGAAAGGTTGAAGCCA-CAAA
*
11607152 GATGAACCTTATACCTTAGAGACGTGATGAGAAAGATTGAAGCCGCAAC-GATGAATCTTGTACC
130 GACGAACCTTATACCTTAGAGACGTGATGAGAAAGATTGAAGCCGCAACAG-TGAATCTTGTACC
11607216 ATG
194 ATG
*
11607219 GAGATATGGAGGGAAAGGTTGAAGCCGCAATGACAAACCTTATACCTAAGAGACGTGATGGGAAA
1 GAGATATGGAGGGAAAGGTTGAAGCCGCAACGACAAACCTTATACCTAAGAGACGTGATGGGAAA
* *
11607284 GATTGAAGCCGCAA-CATCGAAT-TGTGTACCATGAAGATATGGAGGGAAAGGTTGAAGCCACAA
66 GATTGAAGCCGCAATCAT-AAATCT-TGTACCATGAAGATATGGAAGGAAAGGTTGAAGCCACAA
* * *
11607347 AGACGAACCTTGTACCTTAGAGACGTGATGCGAAAGATTGAAGCTGCAACAGTGAATCTTGTACC
129 AGACGAACCTTATACCTTAGAGACGTGATGAGAAAGATTGAAGCCGCAACAGTGAATCTTGTACC
11607412 ATG
194 ATG
11607415 GA
1 GA
11607417 AAAGGAGGAG
Statistics
Matches: 178, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
195 3 0.02
196 172 0.97
197 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (196 bp):
GAGATATGGAGGGAAAGGTTGAAGCCGCAACGACAAACCTTATACCTAAGAGACGTGATGGGAAA
GATTGAAGCCGCAATCATAAATCTTGTACCATGAAGATATGGAAGGAAAGGTTGAAGCCACAAAG
ACGAACCTTATACCTTAGAGACGTGATGAGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCAT
G
Found at i:11607382 original size:49 final size:49
Alignment explanation
Indices: 11607033--11607396 Score: 290
Period size: 49 Copynumber: 7.4 Consensus size: 49
11607023 GAGATATGGA
* * * *
11607033 GGGAAAGGTTGAAGCCGTAACGGCAAACCTTGTACCTTAGAGACGTGAT
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGTGAT
* * ** * * **
11607082 GGGAAAGATTGAATCCGCAATGATAAATCTTGTACCTTGGAGATATGGA-
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGT-GAT
* * * * *
11607131 AGGAAAGGTTGAAGCAGCAACGATGAACCTTATACCTTAGAGACGTGAT
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGTGAT
* * * * * **
11607180 GAGAAAGATTGAAGCCGCAACGATGAATCTTGTACCATGGAGATATGGA-
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGT-GAT
* * * * *
11607229 GGGAAAGGTTGAAGCCGCAATGACAAACCTTATACCTAAGAGACGTGAT
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGTGAT
* * **
11607278 GGGAAAGATTGAAGCCGCAAC-ATCGAA-TTGTGTACCAT-GAAGATATGGA-
1 GGGAAAGATTGAAGCCGCAACGA-CGAACCT-TGTACCTTAG-AGACGT-GAT
* * *
11607327 GGGAAAGGTTGAAGCCACAAAGACGAACCTTGTACCTTAGAGACGTGAT
1 GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGTGAT
* *
11607376 GCGAAAGATTGAAGCTGCAAC
1 GGGAAAGATTGAAGCCGCAAC
11607397 AGTGAATCTT
Statistics
Matches: 239, Mismatches: 64, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
48 9 0.04
49 221 0.92
50 9 0.04
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (49 bp):
GGGAAAGATTGAAGCCGCAACGACGAACCTTGTACCTTAGAGACGTGAT
Found at i:11607762 original size:82 final size:82
Alignment explanation
Indices: 11607532--11607995 Score: 535
Period size: 82 Copynumber: 5.8 Consensus size: 82
11607522 AGAGCAAAGC
*
11607532 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-CCATCCAATCTCTTACCT
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
*
11607596 CGATCATGGGGCAAATT
66 CGATCATGGGGCAGATT
* ** *
11607613 GAAG----CATCCAATCTTTTACCTAG-TCA-GAGGGCAAATTGAAGACACCATCCAATCTCTTA
1 GAAGACATCATCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG--ACCATCCAATCTCTTA
*
11607672 CCCCGATCATGGGGCAGAAT
63 CCCCGATCATGGGGCAGATT
* * * * * *
11607692 GAAGACATCATCCAATATCTTACCCCGATCATGGGGTAAACTGAAGACCATCCAATATCTTATCC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
* * *
11607757 AGATCATAGGGTAGATT
66 CGATCATGGGGCAGATT
* * *
11607774 GAAGATATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGACCATTCAATCTCTTACCC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
*
11607839 CGATCATGGAGCAGATT
66 CGATCATGGGGCAGATT
* *
11607856 GAAGACATCATCCAATCACTTACCACGATCATGGGGCAGATTGAAG--CATCCAATCT-TTAACC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTT-ACC
*** *
11607918 TTAATCA-GAAGGCAGATT
65 CCGATCATG-GGGCAGATT
*
11607936 GAAGACA-CA-CCAATCTCTTACCCCGATCATGGGGCAGATTGAAG--CATCCAATCTTTTACC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACC
11607996 TTAATCAGAG
Statistics
Matches: 326, Mismatches: 44, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
75 1 0.00
76 15 0.05
77 16 0.05
78 46 0.14
79 43 0.13
80 30 0.09
81 4 0.01
82 141 0.43
83 15 0.05
84 14 0.04
85 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (82 bp):
GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
CGATCATGGGGCAGATT
Found at i:11607807 original size:124 final size:121
Alignment explanation
Indices: 11607532--11608018 Score: 518
Period size: 124 Copynumber: 4.0 Consensus size: 121
11607522 AGAGCAAAGC
*
11607532 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG-CCATCCAATCTCTTACCT
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
* * * *
11607596 CGATCATGGGGCAAATTGAAG--CATCCAATCTTTTACCTAG-TCAGAGGGCAAATT
66 CGATCATGGGGCAAATTGAAGACCATCCAATATCTTACC-AGATCATAGGGCAGATT
* * *
11607650 GAAGACACCATCCAATCTCTTACCCCGATCATGGGGCAGAATGAAGACATCATCCAATATCTTAC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGAC--CATCCAATCTCTTAC
* * *
11607715 CCCGATCATGGGGTAAACTGAAGACCATCCAATATCTTATCCAGATCATAGGGTAGATT
64 CCCGATCATGGGGCAAATTGAAGACCATCCAATATCTTA-CCAGATCATAGGGCAGATT
* * *
11607774 GAAGATATCATCCAATCTCTTACCCTGATCATGGGGCAGATTGAAGACCATTCAATCTCTTACCC
1 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
* * *
11607839 CGATCATGGAGCAGATTGAAGACATCATCCAATCA-CTTACCACGATCATGGGGCAGATT
66 CGATCATGGGGCAAATTGAAGAC--CATCCAAT-ATCTTACCA-GATCATAGGGCAGATT
*** *
11607898 GAAG----CATCCAATCT-TTAACCTTAATCA-GAAGGCAGATTGAAGACACA-CCAATCTCTTA
1 GAAGACATCATCCAATCTCTT-ACCCCGATCATG-GGGCAGATTGAAGAC-CATCCAATCTCTTA
* * * * *
11607956 CCCCGATCATGGGGCAGATTGAAG--CATCCAATCTTTTACCTTA-ATCAGAGGGCTGATT
63 CCCCGATCATGGGGCAAATTGAAGACCATCCAATATCTTACC--AGATCATAGGGCAGATT
11608014 GAAGA
1 GAAGA
11608019 TACACCATTC
Statistics
Matches: 318, Mismatches: 33, Indels: 37
0.82 0.09 0.10
Matches are distributed among these distances:
116 29 0.09
118 45 0.14
119 4 0.01
120 65 0.20
121 36 0.11
122 34 0.11
123 17 0.05
124 87 0.27
125 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (121 bp):
GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACCATCCAATCTCTTACCC
CGATCATGGGGCAAATTGAAGACCATCCAATATCTTACCAGATCATAGGGCAGATT
Found at i:11607972 original size:40 final size:41
Alignment explanation
Indices: 11607532--11607995 Score: 487
Period size: 42 Copynumber: 11.6 Consensus size: 41
11607522 AGAGCAAAGC
11607532 GAAGACATCATCCAATCTCTTACCCCGATCATGGGGCAGATT
1 GAAGACA-CATCCAATCTCTTACCCCGATCATGGGGCAGATT
* *
11607574 GAAG-C-CATCCAATCTCTTACCTCGATCATGGGGCAAATT
1 GAAGACACATCCAATCTCTTACCCCGATCATGGGGCAGATT
* ** *
11607613 GAAG---CATCCAATCTTTTACCTAG-TCA-GAGGGCAAATT
1 GAAGACACATCCAATCTCTTACCCCGATCATG-GGGCAGATT
*
11607650 GAAGACACCATCCAATCTCTTACCCCGATCATGGGGCAGAAT
1 GAAGACA-CATCCAATCTCTTACCCCGATCATGGGGCAGATT
* * * *
11607692 GAAGACATCATCCAATATCTTACCCCGATCATGGGGTAAACT
1 GAAGACA-CATCCAATCTCTTACCCCGATCATGGGGCAGATT
* * * * *
11607734 GAAGAC-CATCCAATATCTTATCCAGATCATAGGGTAGATT
1 GAAGACACATCCAATCTCTTACCCCGATCATGGGGCAGATT
* *
11607774 GAAGATATCATCCAATCTCTTACCCTGATCATGGGGCAGATT
1 GAAGACA-CATCCAATCTCTTACCCCGATCATGGGGCAGATT
* *
11607816 GAAGAC-CATTCAATCTCTTACCCCGATCATGGAGCAGATT
1 GAAGACACATCCAATCTCTTACCCCGATCATGGGGCAGATT
* *
11607856 GAAGACATCATCCAATCACTTACCACGATCATGGGGCAGATT
1 GAAGACA-CATCCAATCTCTTACCCCGATCATGGGGCAGATT
*** *
11607898 GAAG---CATCCAATCT-TTAACCTTAATCA-GAAGGCAGATT
1 GAAGACACATCCAATCTCTT-ACCCCGATCATG-GGGCAGATT
11607936 GAAGACACA-CCAATCTCTTACCCCGATCATGGGGCAGATT
1 GAAGACACATCCAATCTCTTACCCCGATCATGGGGCAGATT
*
11607976 GAAG---CATCCAATCTTTTACC
1 GAAGACACATCCAATCTCTTACC
11607996 TTAATCAGAG
Statistics
Matches: 360, Mismatches: 43, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
36 1 0.00
37 21 0.06
38 57 0.16
39 36 0.10
40 97 0.27
41 22 0.06
42 125 0.35
43 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
GAAGACACATCCAATCTCTTACCCCGATCATGGGGCAGATT
Found at i:11608014 original size:38 final size:38
Alignment explanation
Indices: 11607889--11608017 Score: 152
Period size: 38 Copynumber: 3.3 Consensus size: 38
11607879 CACGATCATG
*
11607889 GGGCAGATTGAAGCATCCAATCTTTAACCTTAATCAGA
1 GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGA
* * * ***
11607927 AGGCAGATTGAAGACACACCAATCTCTTACCCCGATCATG-
1 GGGCAGATTGAAG-CA-TCCAATCTTTTACCTTAATCA-GA
11607967 GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGA
1 GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGA
*
11608005 GGGCTGATTGAAG
1 GGGCAGATTGAAG
11608018 ATACACCATT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
37 1 0.01
38 40 0.55
39 4 0.05
40 27 0.37
41 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (38 bp):
GGGCAGATTGAAGCATCCAATCTTTTACCTTAATCAGA
Found at i:11611494 original size:15 final size:16
Alignment explanation
Indices: 11611460--11611491 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
11611450 AAATGAGGTG
11611460 AATTGATTTTTAGATA
1 AATTGATTTTTAGATA
11611476 AATT-ATTTTTAG-TA
1 AATTGATTTTTAGATA
11611490 AA
1 AA
11611492 ATTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 8 0.50
16 4 0.25
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (16 bp):
AATTGATTTTTAGATA
Found at i:11612384 original size:16 final size:15
Alignment explanation
Indices: 11612362--11612409 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
11612352 CAAAAACATC
11612362 TATATTTTTTTATTT
1 TATATTTTTTTATTT
** *
11612377 TAATATTTAATAATTT
1 T-ATATTTTTTTATTT
11612393 TATAGTTTTTTTATTT
1 TATA-TTTTTTTATTT
11612409 T
1 T
11612410 TTGAAATATT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TATATTTTTTTATTT
Found at i:11626403 original size:11 final size:12
Alignment explanation
Indices: 11626387--11626429 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
11626377 CAAGTCCGAC
11626387 CGTTGACTAG-T
1 CGTTGACTAGAT
11626398 CGTTGACT-GAT
1 CGTTGACTAGAT
*
11626409 CGTTGAC-AGAC
1 CGTTGACTAGAT
11626420 CGTTGACTAG
1 CGTTGACTAG
11626430 CCATTGACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
10 1 0.04
11 25 0.89
12 2 0.07
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (12 bp):
CGTTGACTAGAT
Found at i:11626447 original size:11 final size:11
Alignment explanation
Indices: 11626398--11626472 Score: 62
Period size: 11 Copynumber: 6.8 Consensus size: 11
11626388 GTTGACTAGT
* *
11626398 CGTTGACTGAT
1 CGTTGACCGAC
*
11626409 CGTTGACAGAC
1 CGTTGACCGAC
*
11626420 CGTTGA-CTAGC
1 CGTTGACCGA-C
*
11626431 CATTGACCGAC
1 CGTTGACCGAC
*
11626442 CGTTGACCAAC
1 CGTTGACCGAC
* *
11626453 TGTTGACCGAT
1 CGTTGACCGAC
11626464 CGTTGACCG
1 CGTTGACCG
11626473 TTGACTTCGA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
10 1 0.02
11 47 0.94
12 2 0.04
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.25
Consensus pattern (11 bp):
CGTTGACCGAC
Found at i:11626458 original size:22 final size:22
Alignment explanation
Indices: 11626409--11626471 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
11626399 GTTGACTGAT
* * *
11626409 CGTTGACAGACCGTTGACTAGC
1 CGTTGACCGACCGTTGACCAAC
*
11626431 CATTGACCGACCGTTGACCAAC
1 CGTTGACCGACCGTTGACCAAC
* *
11626453 TGTTGACCGATCGTTGACC
1 CGTTGACCGACCGTTGACC
11626472 GTTGACTTCG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (22 bp):
CGTTGACCGACCGTTGACCAAC
Found at i:11626459 original size:33 final size:33
Alignment explanation
Indices: 11626384--11626448 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
11626374 AACCAAGTCC
* * * *
11626384 GACCGTTGACTAGTCGTTGACTGATCGTTGACA
1 GACCGTTGACTAGCCATTGACCGACCGTTGACA
11626417 GACCGTTGACTAGCCATTGACCGACCGTTGAC
1 GACCGTTGACTAGCCATTGACCGACCGTTGAC
11626449 CAACTGTTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (33 bp):
GACCGTTGACTAGCCATTGACCGACCGTTGACA
Found at i:11636741 original size:13 final size:13
Alignment explanation
Indices: 11636719--11636751 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11636709 AACAATATCA
11636719 AAATAATAATCCT
1 AAATAATAATCCT
*
11636732 AAATATTAATCCT
1 AAATAATAATCCT
11636745 AAA-AATA
1 AAATAATA
11636752 GAGTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAATAATCCT
Found at i:11636942 original size:2 final size:2
Alignment explanation
Indices: 11636935--11636959 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11636925 ATCATACTCA
11636935 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
11636960 AAAGTATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11638590 original size:29 final size:27
Alignment explanation
Indices: 11638527--11638590 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 27
11638517 TTTCCCGTGC
* *
11638527 ATAATTGTATTAAATTAAAGTTCATGT
1 ATAATTGTATTAAATCAAAATTCATGT
11638554 ATACAATTGCATATTAAATCAAAATTCATGT
1 AT--AATTG--TATTAAATCAAAATTCATGT
11638585 ATAATT
1 ATAATT
11638591 TTGAGATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
27 2 0.06
29 9 0.29
31 20 0.65
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (27 bp):
ATAATTGTATTAAATCAAAATTCATGT
Found at i:11644313 original size:31 final size:30
Alignment explanation
Indices: 11644261--11644346 Score: 77
Period size: 30 Copynumber: 2.8 Consensus size: 30
11644251 TCAAAATACG
* *
11644261 TATT-AATCCTTTTAATATTTTTT-AAATATCT
1 TATTAAATCC-TTAAAT-TTTTTTAAAAT-TAT
*
11644292 TATTAAATCCTTGAATTTTTTTAAAATTAT
1 TATTAAATCCTTAAATTTTTTTAAAATTAT
* * *
11644322 AATGAAATCCTTAAATTTTGTTAAA
1 TATTAAATCCTTAAATTTTTTTAAA
11644347 GTTTTAATTG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
30 29 0.62
31 13 0.28
32 5 0.11
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.51
Consensus pattern (30 bp):
TATTAAATCCTTAAATTTTTTTAAAATTAT
Found at i:11644466 original size:28 final size:26
Alignment explanation
Indices: 11644421--11644480 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 26
11644411 TTGTAATGAT
*
11644421 GAAA-TTGAATTGAAATGAAATTTGAG
1 GAAATTTGAATTGAAATGAAAATTG-G
*
11644447 GAATATTTGAATTGAGATGAAAATTGG
1 GAA-ATTTGAATTGAAATGAAAATTGG
11644474 GAAATTT
1 GAAATTT
11644481 AGATAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 7 0.23
27 5 0.17
28 18 0.60
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (26 bp):
GAAATTTGAATTGAAATGAAAATTGG
Found at i:11648615 original size:7 final size:7
Alignment explanation
Indices: 11648603--11648628 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
11648593 ATTTATATTA
11648603 AAATTTT
1 AAATTTT
11648610 AAATTTT
1 AAATTTT
11648617 AAATTTT
1 AAATTTT
11648624 AAATT
1 AAATT
11648629 CGAATGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:11648731 original size:20 final size:20
Alignment explanation
Indices: 11648694--11648731 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11648684 AGCTAAAATT
*
11648694 AAAATAATATATCTAAACTC
1 AAAATAATATATCAAAACTC
11648714 AAAATAA-ATCATCAAAAC
1 AAAATAATAT-ATCAAAAC
11648732 CTAAATGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATAATATATCAAAACTC
Found at i:11652365 original size:24 final size:24
Alignment explanation
Indices: 11652337--11652458 Score: 199
Period size: 24 Copynumber: 5.1 Consensus size: 24
11652327 GTATACTGGT
* *
11652337 TAACCATTCTGAGCTCGTAAGAGC
1 TAACCATTCTGGGCTCGTGAGAGC
11652361 TAACCATTCTGGGCTCGTGAGAGC
1 TAACCATTCTGGGCTCGTGAGAGC
* * *
11652385 TAACCATTCTGGGCTCATAAGAGA
1 TAACCATTCTGGGCTCGTGAGAGC
11652409 TAACCATTCTGGGCTCGTGAGAGC
1 TAACCATTCTGGGCTCGTGAGAGC
11652433 TAACCATTCTGGGCTCGTGAGAGC
1 TAACCATTCTGGGCTCGTGAGAGC
11652457 TA
1 TA
11652459 GTTAGTGCTC
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 90 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (24 bp):
TAACCATTCTGGGCTCGTGAGAGC
Found at i:11673805 original size:25 final size:26
Alignment explanation
Indices: 11673759--11673807 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
11673749 AAATTTCATA
* * *
11673759 ATTTTTTAATGTTGTTATTTATATAT
1 ATTTTTCAATGTCGTTACTTATATAT
11673785 ATTTTTCAATGTCG-TACTTATAT
1 ATTTTTCAATGTCGTTACTTATAT
11673808 TTGATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (26 bp):
ATTTTTCAATGTCGTTACTTATATAT
Found at i:11673831 original size:19 final size:19
Alignment explanation
Indices: 11673807--11673848 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
11673797 CGTACTTATA
*
11673807 TTTGATAA-AATTTATAAAT
1 TTTGATAACAATAT-TAAAT
11673826 TTTGATAACAATATTAAAT
1 TTTGATAACAATATTAAAT
11673845 TTTG
1 TTTG
11673849 GCATAATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
TTTGATAACAATATTAAAT
Found at i:11675297 original size:30 final size:31
Alignment explanation
Indices: 11675260--11675334 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
11675250 AATTAAAATT
*
11675260 ATTTAATAATTTTAT-TATTTCAAAAAATAA
1 ATTTAATAATTTTATATATTTCAAAAAAAAA
* * *
11675290 TTTTAATAATTTTATATTTTTTAAAAAAAAA
1 ATTTAATAATTTTATATATTTCAAAAAAAAA
11675321 ATTTAATAATTTTA
1 ATTTAATAATTTTA
11675335 AAACTATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 14 0.36
31 25 0.64
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (31 bp):
ATTTAATAATTTTATATATTTCAAAAAAAAA
Found at i:11680508 original size:20 final size:20
Alignment explanation
Indices: 11680483--11680555 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
11680473 AAATCCATAT
* *
11680483 GTATCGATACCCTGAATGAA
1 GTATCGATACCTTGACTGAA
** *
11680503 GTATCGATATTTTGACTAAA
1 GTATCGATACCTTGACTGAA
*
11680523 GTATCGATATCTTGACTGAA
1 GTATCGATACCTTGACTGAA
*
11680543 GTATCAATACCTT
1 GTATCGATACCTT
11680556 TCTCAACGTA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (20 bp):
GTATCGATACCTTGACTGAA
Found at i:11686316 original size:57 final size:55
Alignment explanation
Indices: 11686253--11686456 Score: 175
Period size: 57 Copynumber: 3.6 Consensus size: 55
11686243 TTGGAGGCAA
11686253 TTTGAGAAGTTTGGGGGTCAAAATGTGATTTTTGAAAGTTCGAGGGTAAAATGTAAT
1 TTTG-GAAGTTTGGGGGTCAAAATGTGATTTTTGAAAGTT-GAGGGTAAAATGTAAT
* * * * *
11686310 TTTGAGAAGTTCGAGGGTAAAAATGTGATTTTTGGAAGTTTG-GGGATAAAATGTGATT
1 TTTG-GAAGTTTGGGGGTCAAAATGTGATTTTTGAAAG-TTGAGGG-TAAAATGT-AAT
* * * *
11686368 TTTGGAAGTTTAGGGGT-AAAAT-TGTAATTTTAAGAAGTTTAGGGGTAAAAATGTAATT
1 TTTGGAAGTTTGGGGGTCAAAATGTG-ATTTTTGA-AAGTTGA-GGGT-AAAATGTAA-T
*
11686426 TTTGGAAAGTTT--AGGTCAAAATGTGATTTTT
1 TTTGG-AAGTTTGGGGGTCAAAATGTGATTTTT
11686457 TTCGAAGTTC
Statistics
Matches: 120, Mismatches: 15, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
55 2 0.02
56 15 0.12
57 61 0.51
58 34 0.28
59 8 0.07
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (55 bp):
TTTGGAAGTTTGGGGGTCAAAATGTGATTTTTGAAAGTTGAGGGTAAAATGTAAT
Found at i:11686457 original size:29 final size:27
Alignment explanation
Indices: 11686253--11686456 Score: 178
Period size: 28 Copynumber: 7.1 Consensus size: 27
11686243 TTGGAGGCAA
*
11686253 TTTGAGAAGTTTGGGGGTCAAAATGTGATT
1 TTTG-GAAGTTT-AGGGT-AAAATGTGATT
* * *
11686283 TTTGAAAGTTCGAGGGTAAAATGT-AAT
1 TTTGGAAGTT-TAGGGTAAAATGTGATT
*
11686310 TTTGAGAAGTTCGAGGGTAAAAATGTGATT
1 TTTG-GAAGTT-TAGGGT-AAAATGTGATT
*
11686340 TTTGGAAGTTTGGGGATAAAATGTGATT
1 TTTGGAAGTTTAGGG-TAAAATGTGATT
*
11686368 TTTGGAAGTTTAGGGGTAAAATTGTAATT
1 TTTGGAAGTTTA-GGGTAAAA-TGTGATT
** *
11686397 TTAAGAAGTTTAGGGGTAAAAATGTAATT
1 TTTGGAAGTTTA-GGGT-AAAATGTGATT
11686426 TTTGGAAAGTTTA-GGTCAAAATGTGATT
1 TTTGG-AAGTTTAGGGT-AAAATGTGATT
11686454 TTT
1 TTT
11686457 TTCGAAGTTC
Statistics
Matches: 149, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
27 6 0.04
28 65 0.44
29 57 0.38
30 21 0.14
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (27 bp):
TTTGGAAGTTTAGGGTAAAATGTGATT
Found at i:11687091 original size:15 final size:15
Alignment explanation
Indices: 11687071--11687101 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11687061 GCCGTCCGTT
*
11687071 GTTGTACACGGTAGC
1 GTTGTACACAGTAGC
11687086 GTTGTACACAGTAGC
1 GTTGTACACAGTAGC
11687101 G
1 G
11687102 CTAAGGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (15 bp):
GTTGTACACAGTAGC
Found at i:11688025 original size:22 final size:21
Alignment explanation
Indices: 11687991--11688031 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
11687981 TTTGGTAATT
11687991 AGACATTAAAAATTTGTAAAAG
1 AGACATTAAAAATTT-TAAAAG
**
11688013 AGACATTTTAAATTTTAAA
1 AGACATTAAAAATTTTAAA
11688032 TTTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (21 bp):
AGACATTAAAAATTTTAAAAG
Found at i:11688445 original size:86 final size:87
Alignment explanation
Indices: 11688274--11688460 Score: 220
Period size: 86 Copynumber: 2.2 Consensus size: 87
11688264 CAAATTAAAA
* * *
11688274 AAAAAAAAACAATT-AAGCCTCTCTTTTTTACACTTAATTGAGCATTTGAACTTTTAAAATACAT
1 AAAAAAAAGCAATTAAAGCCTCTCTTTTTTACACTCAATTGAGCACTTGAACTTTTAAAATACAT
* *
11688338 CAAAAAAACCTTCAAATTTTTT
66 CAAAAAAACCCTCAAAATTTTT
* * * * **
11688360 AAAAAAAAGCAATTAAATCC-CTTTTTTTTGCACTCAATTGAGTACTTGAA-TTTTCAAAATGGA
1 AAAAAAAAGCAATTAAAGCCTCTCTTTTTTACACTCAATTGAGCACTTGAACTTTT-AAAATACA
*
11688423 TCAAAAAGACCCTCAAAATTTTT
65 TCAAAAAAACCCTCAAAATTTTT
*
11688446 -CAAAAAAGCAATTAA
1 AAAAAAAAGCAATTAA
11688461 GCTCTTGCTC
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
85 18 0.21
86 64 0.74
87 4 0.05
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (87 bp):
AAAAAAAAGCAATTAAAGCCTCTCTTTTTTACACTCAATTGAGCACTTGAACTTTTAAAATACAT
CAAAAAAACCCTCAAAATTTTT
Done.