Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 48 of 193
Found at i:14667397 original size:20 final size:18
Alignment explanation
Indices: 14667372--14667408 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
14667362 TACAATATAT
14667372 TTCTTTTCTTTTCTCTTTTC
1 TTCTTTT-TTTT-TCTTTTC
14667392 TTCTTTTTTTTTCTTTT
1 TTCTTTTTTTTTCTTTT
14667409 TATGATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTCTTTTTTTTTCTTTTC
Found at i:14683130 original size:41 final size:41
Alignment explanation
Indices: 14683067--14683269 Score: 223
Period size: 41 Copynumber: 4.9 Consensus size: 41
14683057 TTCCTTTAAC
* *
14683067 CATATTCTCATTCTCATCTCGAGACATGAATCTTCCTTAAT
1 CATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTATT
* * *
14683108 CAAAATCTCATTCTCATTTCGAGACAT-AAGTCTTCCTTATT
1 CATAGTCTCATTCTCATCTCGAGACATGAA-TCTTCCTTATT
* *
14683149 CATAGTCTCATTCTTATCTCGAGACATGAGTCTTCCTTATT
1 CATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTATT
* *
14683190 CATAGTCTCA-TCTCATCTCGAGACATGAGTCTTCCATTTATA
1 CATAGTCTCATTCTCATCTCGAGACATGAATCTTCC--TTATT
* * * * *
14683232 CAT-TTCTCATGCTCAAACCCGAGACATGAGTCTTCCTT
1 CATAGTCTCATTCTC-ATCTCGAGACATGAATCTTCCTT
14683270 TTTTTACACC
Statistics
Matches: 141, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
40 26 0.18
41 85 0.60
42 11 0.08
43 19 0.13
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.37
Consensus pattern (41 bp):
CATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTATT
Found at i:14683173 original size:82 final size:82
Alignment explanation
Indices: 14683043--14683269 Score: 253
Period size: 82 Copynumber: 2.8 Consensus size: 82
14683033 ATATGCTCTA
* *
14683043 TCGAGTCATAAGTCTTCCTTTAACCATATTCTCATTCTCATCTCGAGACATGAATCTTCCTTAAT
1 TCGAGACATAAGTCTTCCTTTAACCATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTAAT
*
14683108 CAAAATCTCATTCTCATT
66 CAAAATCTCA-TCTCATC
** * * *
14683126 TCGAGACATAAGTCTTCC-TTATTCATAGTCTCATTCTTATCTCGAGACATGAGTCTTCCTTATT
1 TCGAGACATAAGTCTTCCTTTAACCATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTAAT
* *
14683190 CATAGTCTCATCTCATC
66 CAAAATCTCATCTCATC
* * * * * *
14683207 TCGAGACATGAGTCTTCCATTTATA-CAT-TTCTCATGCTCAAACCCGAGACATGAGTCTTCCTT
1 TCGAGACATAAGTCTTCC-TTTA-ACCATAGTCTCATTCTC-ATCTCGAGACATGAATCTTCCTT
14683270 TTTTTACACC
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
81 23 0.19
82 56 0.46
83 44 0.36
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (82 bp):
TCGAGACATAAGTCTTCCTTTAACCATAGTCTCATTCTCATCTCGAGACATGAATCTTCCTTAAT
CAAAATCTCATCTCATC
Found at i:14683264 original size:43 final size:40
Alignment explanation
Indices: 14683044--14683269 Score: 161
Period size: 41 Copynumber: 5.5 Consensus size: 40
14683034 TATGCTCTAT
* * * * *
14683044 CGAGTCATAAGTCTTCCTT-TAACCATATTCTCATTCTCATCT
1 CGAGACATGAGTCTTCCTTAT-A-CATAGTCTCA-TCTCAACC
* * * ***
14683086 CGAGACATGAATCTTCCTTA-ATCAAAATCTCATTCTCATTT
1 CGAGACATGAGTCTTCCTTATA-CATAGTCTCA-TCTCAACC
* * * * *
14683127 CGAGACATAAGTCTTCCTTATTCATAGTCTCATTCTTATCT
1 CGAGACATGAGTCTTCCTTATACATAGTCTCA-TCTCAACC
* * *
14683168 CGAGACATGAGTCTTCCTTATTCATAGTCTCATCTCATCT
1 CGAGACATGAGTCTTCCTTATACATAGTCTCATCTCAACC
*
14683208 CGAGACATGAGTCTTCCATTTATACAT-TTCTCATGCTCAAACC
1 CGAGACATGAGTCTTCC--TTATACATAGTCTCAT-CTC-AACC
14683251 CGAGACATGAGTCTTCCTT
1 CGAGACATGAGTCTTCCTT
14683270 TTTTTACACC
Statistics
Matches: 158, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
40 24 0.15
41 89 0.56
42 26 0.16
43 19 0.12
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.37
Consensus pattern (40 bp):
CGAGACATGAGTCTTCCTTATACATAGTCTCATCTCAACC
Found at i:14684112 original size:22 final size:21
Alignment explanation
Indices: 14684065--14684112 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
14684055 GACTTTCATA
*
14684065 ATTAACTTAATTAATCATCTT
1 ATTAACTTAATTAATCATATT
* * *
14684086 CTTAACCTTAATTTATCCTATT
1 ATTAA-CTTAATTAATCATATT
14684108 ATTAA
1 ATTAA
14684113 TAAATATTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:14689000 original size:27 final size:27
Alignment explanation
Indices: 14688969--14689031 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
14688959 TACTTTAGAA
*
14688969 TCATTTGTCGGAACATTACTATTTACC
1 TCATTTGTCGAAACATTACTATTTACC
14688996 TCATTTGTCGAAACATTACTATTTACC
1 TCATTTGTCGAAACATTACTATTTACC
14689023 TCATTTGTC
1 TCATTTGTC
14689032 TTATCTCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (27 bp):
TCATTTGTCGAAACATTACTATTTACC
Found at i:14690258 original size:41 final size:41
Alignment explanation
Indices: 14690171--14690399 Score: 233
Period size: 41 Copynumber: 5.5 Consensus size: 41
14690161 TTATGCTCTA
* * * * * *
14690171 TCGAGACATAAGTCTTTCTTTAACCATATTCTCATTCTCGTC
1 TCGAGACATGAGTC-TTCCTTAATCAAAGTCTCATTCTCATC
* *
14690213 TCAAGACATGAGTCTTCCTTAATCAAAGTCTCATTCTCATT
1 TCGAGACATGAGTCTTCCTTAATCAAAGTCTCATTCTCATC
* * * *
14690254 TCAAGACATGAATCTTCCTTATTCATAGTCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTAATCAAAGTCTCATTCTCATC
* * *
14690295 TTGAGACATGAGTCTTCCTTATTCATAGTCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTAATCAAAGTCTCATTCTCATC
* * ** * *
14690336 TCGAGACATTAGTCTTCCATTTATACAATTTCTCATGCTCAAAC
1 TCGAGACATGAGTCTTCC-TTAAT-CAAAGTCTCATTCTC-ATC
14690380 TCGAGACATGAGTCTTCCTT
1 TCGAGACATGAGTCTTCCTT
14690400 TTTATACACC
Statistics
Matches: 159, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
41 112 0.70
42 15 0.09
43 13 0.08
44 19 0.12
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.38
Consensus pattern (41 bp):
TCGAGACATGAGTCTTCCTTAATCAAAGTCTCATTCTCATC
Found at i:14691246 original size:22 final size:21
Alignment explanation
Indices: 14691199--14691246 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
14691189 GACTTTCATA
*
14691199 ATTAACTTAATTAATCATCTT
1 ATTAACTTAATTAATCATATT
* * *
14691220 TTTAACCTTAATTTATCCTATT
1 ATTAA-CTTAATTAATCATATT
14691242 ATTAA
1 ATTAA
14691247 TCAATATTTG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:14696249 original size:18 final size:18
Alignment explanation
Indices: 14696228--14696266 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
14696218 CTCATTTCTA
14696228 ATCGCCACCTAAATTCCC
1 ATCGCCACCTAAATTCCC
* *
14696246 ATCGCCACCTTAATTCTC
1 ATCGCCACCTAAATTCCC
14696264 ATC
1 ATC
14696267 ACCTTATGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.41, G:0.05, T:0.28
Consensus pattern (18 bp):
ATCGCCACCTAAATTCCC
Found at i:14696598 original size:28 final size:28
Alignment explanation
Indices: 14696567--14696655 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 28
14696557 ATATTATATG
14696567 ATTTAATAAAATAGAAGTTATTTTGAAT
1 ATTTAATAAAATAGAAGTTATTTTGAAT
** * * *
14696595 ATTTTGTACACAT--TA-TTATATATTGTAT
1 ATTTAATA-AAATAGAAGTTAT-T-TTGAAT
*
14696623 CATTTAATAAAATAGAAGTTCTTTTGAAT
1 -ATTTAATAAAATAGAAGTTATTTTGAAT
14696652 ATTT
1 ATTT
14696656 TTGTACATAT
Statistics
Matches: 43, Mismatches: 11, Indels: 14
0.63 0.16 0.21
Matches are distributed among these distances:
26 4 0.09
27 2 0.05
28 18 0.42
29 14 0.33
30 2 0.05
31 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.47
Consensus pattern (28 bp):
ATTTAATAAAATAGAAGTTATTTTGAAT
Found at i:14696701 original size:59 final size:59
Alignment explanation
Indices: 14696524--14696748 Score: 373
Period size: 59 Copynumber: 3.8 Consensus size: 59
14696514 ATACATTGAT
* * *
14696524 GTTATTTTGAATATTTTTTTACACATTATTTTTATATTATATGATTTAATAAAATAGAA
1 GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAGAA
*
14696583 GTTATTTTGAATA-TTTTGTACACATTA-TTATATATTGTATCATTTAATAAAATAGAA
1 GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAGAA
* * *
14696640 GTTCTTTTGAATATTTTTGTACATATTATTTTTATATTGTATCATTTAATAAAATAAAA
1 GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAGAA
14696699 GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAAT
1 GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAAT
14696749 TGAGAACCCA
Statistics
Matches: 154, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
57 39 0.25
58 26 0.17
59 89 0.58
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.52
Consensus pattern (59 bp):
GTTATTTTGAATATTTTTGTACACATTATTTTTATATTGTATCATTTAATAAAATAGAA
Found at i:14696785 original size:116 final size:113
Alignment explanation
Indices: 14696548--14696782 Score: 271
Period size: 116 Copynumber: 2.1 Consensus size: 113
14696538 TTTTTTACAC
* *
14696548 ATTATTTTTATATTATATGATTTAATAAAATAGAAGTTATTTTGAATATTTTGTACACATTATTA
1 ATTATTTTTATATTATATCATTTAATAAAATAAAAGTTATTTTGAATATTTTGTACACATTATTA
** * * * * *
14696613 TATATTGTATCATTTAATAAAATAGAAGTTCTTTTGAATATTTTTGTACAT
66 TATATTGTATCATTTAAT---ATAGAAGCCCATTCGAATATGTTTGAAAAT
*
14696664 ATTATTTTTATATTGTATCATTTAATAAAATAAAAGTTATTTTGAATATTTTTGTACACATTATT
1 ATTATTTTTATATTATATCATTTAATAAAATAAAAGTTATTTTGAATA-TTTTGTACACATTA-T
*
14696729 TTTATATTGTATCATTTAAT-TGAGAA-CCCAATTCGAA-A-GTTTGAAAAT
64 TATATATTGTATCATTTAATAT-AGAAGCCC-ATTCGAATATGTTTGAAAAT
*
14696777 TTTATT
1 ATTATT
14696783 ATTACGATAC
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
113 12 0.12
114 3 0.03
115 9 0.09
116 45 0.44
117 14 0.14
118 20 0.19
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (113 bp):
ATTATTTTTATATTATATCATTTAATAAAATAAAAGTTATTTTGAATATTTTGTACACATTATTA
TATATTGTATCATTTAATATAGAAGCCCATTCGAATATGTTTGAAAAT
Found at i:14703705 original size:15 final size:16
Alignment explanation
Indices: 14703682--14703728 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 16
14703672 CCTAAACTAA
14703682 TTCTTTCTCGGCATCT
1 TTCTTTCTCGGCATCT
**
14703698 TT-TTTCTCAACAT-T
1 TTCTTTCTCGGCATCT
*
14703712 TTCTTCCTCGGCATCT
1 TTCTTTCTCGGCATCT
14703728 T
1 T
14703729 CTTCCTTCTC
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
14 3 0.12
15 17 0.71
16 4 0.17
ACGTcount: A:0.11, C:0.30, G:0.09, T:0.51
Consensus pattern (16 bp):
TTCTTTCTCGGCATCT
Found at i:14703732 original size:15 final size:15
Alignment explanation
Indices: 14703682--14703734 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
14703672 CCTAAACTAA
*
14703682 TTCTTTCTCGGCATC
1 TTCTTCCTCGGCATC
* * ** *
14703697 TTTTTTCTCAACATT
1 TTCTTCCTCGGCATC
14703712 TTCTTCCTCGGCATC
1 TTCTTCCTCGGCATC
14703727 TTCTTCCT
1 TTCTTCCT
14703735 TCTCGTTCAT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.09, C:0.32, G:0.08, T:0.51
Consensus pattern (15 bp):
TTCTTCCTCGGCATC
Found at i:14709197 original size:22 final size:22
Alignment explanation
Indices: 14709169--14709212 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14709159 ATAGTTTCAA
14709169 TATCACTAAGCTTATTCTTCTT
1 TATCACTAAGCTTATTCTTCTT
14709191 TATCACTAAGCTTATTCTTCTT
1 TATCACTAAGCTTATTCTTCTT
14709213 AGACAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (22 bp):
TATCACTAAGCTTATTCTTCTT
Found at i:14714409 original size:21 final size:21
Alignment explanation
Indices: 14714369--14714414 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
14714359 CCTTACTCAT
*
14714369 TTCTCACAATATTCTTTCAAG
1 TTCTCACAATATTCTTTCAAA
14714390 TTCTCA-AA-ATTCTCTCTCAAA
1 TTCTCACAATATTCT-T-TCAAA
14714411 TTCT
1 TTCT
14714415 ATTTCTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.23
20 3 0.14
21 14 0.64
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.43
Consensus pattern (21 bp):
TTCTCACAATATTCTTTCAAA
Found at i:14714457 original size:12 final size:13
Alignment explanation
Indices: 14714430--14714466 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
14714420 TATCTAGAAT
*
14714430 ATATTTTTTATTA
1 ATATTTTTTATAA
14714443 ATATTTTTTA-AA
1 ATATTTTTTATAA
14714455 ATATTTTTTATA
1 ATATTTTTTATA
14714467 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTTTTTATAA
Found at i:14717197 original size:27 final size:27
Alignment explanation
Indices: 14717156--14717210 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
14717146 CTGCTTAATA
*
14717156 TAGAAAGTGCTAAGAAAATAACAATGC
1 TAGAAAGTGCCAAGAAAATAACAATGC
* *
14717183 TAGAAATTGCCAAGAGAATAACAATGC
1 TAGAAAGTGCCAAGAAAATAACAATGC
14717210 T
1 T
14717211 TGCTTTTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (27 bp):
TAGAAAGTGCCAAGAAAATAACAATGC
Found at i:14717967 original size:41 final size:41
Alignment explanation
Indices: 14717922--14718065 Score: 118
Period size: 41 Copynumber: 3.5 Consensus size: 41
14717912 TGCGAAAAGC
14717922 GCTTCTAGCT-AGAAGCGTTTTTCTGCATTTCACTTGAAAAT
1 GCTTCTAGCTGA-AAGCGTTTTTCTGCATTTCACTTGAAAAT
* **
14717963 GCTTCTAGCTGAAAGCGTTTTAT-TGTCA--CCACGCGAAAATT
1 GCTTCTAGCTGAAAGCGTTTT-TCTG-CATTTCACTTGAAAA-T
* * * * *
14718004 ACTTCCAGCT-AGAAGCATTTTTCTGCATTTCACTTAAAAAC
1 GCTTCTAGCTGA-AAGCGTTTTTCTGCATTTCACTTGAAAAT
* *
14718045 GCTTTTAACTGAAAGCGTTTT
1 GCTTCTAGCTGAAAGCGTTTT
14718066 CAAATTATCG
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
40 12 0.15
41 54 0.69
42 12 0.15
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (41 bp):
GCTTCTAGCTGAAAGCGTTTTTCTGCATTTCACTTGAAAAT
Found at i:14718025 original size:82 final size:82
Alignment explanation
Indices: 14717878--14718065 Score: 234
Period size: 82 Copynumber: 2.3 Consensus size: 82
14717868 GTTTTTCATT
* * * * * * *
14717878 AACGTTTCTTGCTGATAGCGTTTTACTGGTACCATGCGAAAAGCGCTTCTAGCTAGAAGCGTTTT
1 AACGCTTCTAGCTGAAAGCGTTTTACTGGTACCACGCGAAAAGCACTTCCAGCTAGAAGCATTTT
*
14717943 TCTGCATTTCACTTGAA
66 TCTGCATTTCACTTAAA
* * **
14717960 AATGCTTCTAGCTGAAAGCGTTTTA-TTGTCACCACGCGAAAATTACTTCCAGCTAGAAGCATTT
1 AACGCTTCTAGCTGAAAGCGTTTTACTGGT-ACCACGCGAAAAGCACTTCCAGCTAGAAGCATTT
14718024 TTCTGCATTTCACTTAAA
65 TTCTGCATTTCACTTAAA
* *
14718042 AACGCTTTTAACTGAAAGCGTTTT
1 AACGCTTCTAGCTGAAAGCGTTTT
14718066 CAAATTATCG
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 3 0.03
82 87 0.97
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (82 bp):
AACGCTTCTAGCTGAAAGCGTTTTACTGGTACCACGCGAAAAGCACTTCCAGCTAGAAGCATTTT
TCTGCATTTCACTTAAA
Found at i:14722051 original size:13 final size:13
Alignment explanation
Indices: 14722033--14722058 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14722023 TGGTACACTG
14722033 TTAGTGAAATTTA
1 TTAGTGAAATTTA
14722046 TTAGTGAAATTTA
1 TTAGTGAAATTTA
14722059 ATAAATTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTAGTGAAATTTA
Found at i:14730035 original size:16 final size:17
Alignment explanation
Indices: 14730019--14730052 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14730009 GCAATGCAGC
14730019 ATTGTTACAATAAAGCA
1 ATTGTTACAATAAAGCA
*
14730036 TATTGTTACAGTAAAGC
1 -ATTGTTACAATAAAGC
14730053 TTGATTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (17 bp):
ATTGTTACAATAAAGCA
Found at i:14730994 original size:10 final size:10
Alignment explanation
Indices: 14730979--14731005 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14730969 GACCCCCTTA
14730979 TTCACTCTAC
1 TTCACTCTAC
14730989 TTCACTCTAC
1 TTCACTCTAC
14730999 TTCACTC
1 TTCACTC
14731006 CATGTGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.41, G:0.00, T:0.41
Consensus pattern (10 bp):
TTCACTCTAC
Found at i:14732799 original size:98 final size:99
Alignment explanation
Indices: 14732622--14732837 Score: 328
Period size: 98 Copynumber: 2.2 Consensus size: 99
14732612 GACTTTAATT
14732622 AAAAAACACTTGAAGATTAAATTTTAAAACTTCATAAAGTACAGAGATTGAAGGAAGAATTGAAC
1 AAAAAACACTTGAAGATTAAA--TTAAAACTTCATAAAGTACAGAGATTGAAGGAAGAATTGAAC
* * *
14732687 CTAATAGTTGAGCTACTAGAAAGATACTTGAAGTAA
64 CTAATAGCTAAGCTACTAGAAAGACACTTGAAGTAA
* * *
14732723 AAAAAACACTTGAAGATTAAA-TAAAAGTTCATAACGTACA-AGGATTGAAGGCAGAATTGAACC
1 AAAAAACACTTGAAGATTAAATTAAAACTTCATAAAGTACAGA-GATTGAAGGAAGAATTGAACC
*
14732786 TAATAGCTAAGCTATTAGAAAGACACTTGAAGTAA
65 TAATAGCTAAGCTACTAGAAAGACACTTGAAGTAA
14732821 AAAAAACACTTGAAGAT
1 AAAAAACACTTGAAGAT
14732838 GTTATCACTA
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
97 1 0.01
98 85 0.79
101 21 0.20
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.24
Consensus pattern (99 bp):
AAAAAACACTTGAAGATTAAATTAAAACTTCATAAAGTACAGAGATTGAAGGAAGAATTGAACCT
AATAGCTAAGCTACTAGAAAGACACTTGAAGTAA
Found at i:14733840 original size:32 final size:32
Alignment explanation
Indices: 14733804--14733884 Score: 135
Period size: 32 Copynumber: 2.5 Consensus size: 32
14733794 TTGAATTAGT
*
14733804 TTGTTGGATTTTGAAATTATTATGTTTTAAAC
1 TTGTTGGATATTGAAATTATTATGTTTTAAAC
* *
14733836 TTGTTGGATATTGAATTTATTATGTTTTAATC
1 TTGTTGGATATTGAAATTATTATGTTTTAAAC
14733868 TTGTTGGATATTGAAAT
1 TTGTTGGATATTGAAAT
14733885 GATTGACAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.53
Consensus pattern (32 bp):
TTGTTGGATATTGAAATTATTATGTTTTAAAC
Found at i:14735658 original size:20 final size:21
Alignment explanation
Indices: 14735607--14735658 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
14735597 CAATGATCGT
*
14735607 TGGAGCAGAACTATCGATGCCA
1 TGGA-CAGAACTATCGATGACA
14735629 TGGACA-AACTATCGAT-ACA
1 TGGACAGAACTATCGATGACA
**
14735648 TTTACAGAACT
1 TGGACAGAACT
14735659 TATTGATACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 6 0.23
20 14 0.54
21 2 0.08
22 4 0.15
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (21 bp):
TGGACAGAACTATCGATGACA
Found at i:14737344 original size:22 final size:22
Alignment explanation
Indices: 14737303--14737345 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14737293 TTAAAATCCA
*
14737303 ATTTTATTTATTTTGTATTTTT
1 ATTTTATTTATTTTGCATTTTT
14737325 ATTTTATTTATTTAT-CATTTT
1 ATTTTATTTATTT-TGCATTTT
14737346 ATAAATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
ATTTTATTTATTTTGCATTTTT
Found at i:14738512 original size:30 final size:30
Alignment explanation
Indices: 14738460--14738709 Score: 208
Period size: 30 Copynumber: 8.3 Consensus size: 30
14738450 TTTAAATTAT
* * *
14738460 ATTTCGACCCCCAAACTATCCAAAAATCTAA
1 ATTT-GACCCTCAAATTTTCCAAAAATCTAA
* * *
14738491 ATTTGACCCTCAAGTTTTCCAAAAATTTGA
1 ATTTGACCCTCAAATTTTCCAAAAATCTAA
* * *
14738521 ATTTAACCCCCAAATTTGCCAAAAAT-TCAA
1 ATTTGACCCTCAAATTTTCCAAAAATCT-AA
* *
14738551 ATTTGACCCTTAAATTTTCCAAAAATTTAA
1 ATTTGACCCTCAAATTTTCCAAAAATCTAA
* * * *
14738581 ATTTGACCC-CTAAACTTTCTAAAAATTTGA
1 ATTTGACCCTC-AAATTTTCCAAAAATCTAA
14738611 ATTTGACCCGT-AAATTTTCCAAAAAT-TCAA
1 ATTTGACCC-TCAAATTTTCCAAAAATCT-AA
* *
14738641 ATTTAACCCTTAAATTTTCCAAAAATTCT-A
1 ATTTGACCCTCAAATTTTCCAAAAA-TCTAA
* *
14738671 ATTTTACCC-CTAAATTTTCCAAAAATTCT-G
1 ATTTGACCCTC-AAATTTTCCAAAAA-TCTAA
14738701 ATTTGACCC
1 ATTTGACCC
14738710 GGTTTTAATG
Statistics
Matches: 182, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
29 3 0.02
30 172 0.95
31 6 0.03
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (30 bp):
ATTTGACCCTCAAATTTTCCAAAAATCTAA
Found at i:14738698 original size:60 final size:61
Alignment explanation
Indices: 14738478--14738698 Score: 272
Period size: 60 Copynumber: 3.7 Consensus size: 61
14738468 CCCCAAACTA
* ** *
14738478 TCCAAAAA-TCTAAATTTGA-CCCTCAAGTTTTCCAAAAATTTGAATTTAACCCCCAAATTT
1 TCCAAAAATTCTAAATTTGACCCCT-AAATTTTCCAAAAATTCAAATTTAACCCCTAAATTT
* * * * *
14738538 GCCAAAAATTC-AAATTTGACCCTTAAATTTTCCAAAAATTTAAATTTGACCCCTAAACTT
1 TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTCAAATTTAACCCCTAAATTT
* * * *
14738598 TCTAAAAATT-TGAATTTGACCCGTAAATTTTCCAAAAATTCAAATTTAACCCTTAAATTT
1 TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTCAAATTTAACCCCTAAATTT
*
14738658 TCCAAAAATTCT-AATTTTACCCCTAAATTTTCCAAAAATTC
1 TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTC
14738699 TGATTTGACC
Statistics
Matches: 139, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
60 133 0.96
61 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.35
Consensus pattern (61 bp):
TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTCAAATTTAACCCCTAAATTT
Found at i:14738705 original size:90 final size:91
Alignment explanation
Indices: 14738478--14738710 Score: 332
Period size: 90 Copynumber: 2.6 Consensus size: 91
14738468 CCCCAAACTA
* * *
14738478 TCCAAAAA-TCTAAATTTGA-CCCTCAAGTTTTCCAAAAATTTGAATTTAACCCCCAAATTTGCC
1 TCCAAAAATTCTAAATTTGACCCCT-AAATTTTCCAAAAATTTGAATTTGACCCGCAAATTTGCC
*
14738541 AAAAATTCAAATTTGACCCTTAAATTT
65 AAAAATTCAAATTTAACCCTTAAATTT
* * * *
14738568 TCCAAAAATT-TAAATTTGACCCCTAAACTTTCTAAAAATTTGAATTTGACCCGTAAATTTTCCA
1 TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTTGAATTTGACCCGCAAATTTGCCA
14738632 AAAATTCAAATTTAACCCTTAAATTT
66 AAAATTCAAATTTAACCCTTAAATTT
*
14738658 TCCAAAAATTCT-AATTTTACCCCTAAATTTTCCAAAAATTCTG-ATTTGACCCG
1 TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATT-TGAATTTGACCCG
14738711 GTTTTAATGT
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
90 120 0.94
91 8 0.06
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.35
Consensus pattern (91 bp):
TCCAAAAATTCTAAATTTGACCCCTAAATTTTCCAAAAATTTGAATTTGACCCGCAAATTTGCCA
AAAATTCAAATTTAACCCTTAAATTT
Found at i:14746882 original size:50 final size:50
Alignment explanation
Indices: 14746828--14746954 Score: 137
Period size: 50 Copynumber: 2.5 Consensus size: 50
14746818 TCCTATATCT
* * * ** *
14746828 CTAAAGTTGTAGAGGAACTGATTGAAGTTGCAATGGCAAATCTCATACAC
1 CTAAAGCTATAGAGGAACAGATTGAAGCCGCAATGGCAAATATCATACAC
* ** * *
14746878 CTAAAGCTATAAAGGGGCAGATTGAAGCCGCAATGGCGAATATCATTCAC
1 CTAAAGCTATAGAGGAACAGATTGAAGCCGCAATGGCAAATATCATACAC
**
14746928 CTAAAGCTATAGAGGGGCAGATTGAAG
1 CTAAAGCTATAGAGGAACAGATTGAAG
14746955 TCGTAAGGAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (50 bp):
CTAAAGCTATAGAGGAACAGATTGAAGCCGCAATGGCAAATATCATACAC
Found at i:14746985 original size:50 final size:50
Alignment explanation
Indices: 14746847--14746954 Score: 162
Period size: 50 Copynumber: 2.2 Consensus size: 50
14746837 TAGAGGAACT
** * *
14746847 GATTGAAGTTGCAATGGCAAATCTCATACACCTAAAGCTATAAAGGGGCA
1 GATTGAAGCCGCAATGGCGAATATCATACACCTAAAGCTATAAAGGGGCA
* *
14746897 GATTGAAGCCGCAATGGCGAATATCATTCACCTAAAGCTATAGAGGGGCA
1 GATTGAAGCCGCAATGGCGAATATCATACACCTAAAGCTATAAAGGGGCA
14746947 GATTGAAG
1 GATTGAAG
14746955 TCGTAAGGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (50 bp):
GATTGAAGCCGCAATGGCGAATATCATACACCTAAAGCTATAAAGGGGCA
Found at i:14747411 original size:100 final size:101
Alignment explanation
Indices: 14747231--14747443 Score: 252
Period size: 100 Copynumber: 2.1 Consensus size: 101
14747221 TGGAGTAAAG
* * * * ** *
14747231 CCAAGTCCTATATCCCTGAAGTTGCAGTAGATCAGATTGAAGCTATGAAGGTGAATCCTTATCTC
1 CCAAATCCTATACCCCTGAAGTTGCAGTAGATCAGATTAAAGCTATGAAAGCAAATCCTTATCTA
* * *
14747296 TCTGAACTTGCAGTAGAGTAGGATGCAGCTACAAAA
66 TCTGAACTTGCAGTAGAGCAAGATGAAGCTACAAAA
* * *
14747332 CCAAAT-CTATACCCCTGAAGTTGTAGTAGGTCAGATTAAAG-TCATGAAAGCAAATCTTTATCT
1 CCAAATCCTATACCCCTGAAGTTGCAGTAGATCAGATTAAAGCT-ATGAAAGCAAATCCTTATCT
*
14747395 ATCTGAAGC-TGCAGTAGAGCAAGATGAAGCTACAACA
65 ATCTGAA-CTTGCAGTAGAGCAAGATGAAGCTACAAAA
*
14747432 TCAAATCCTATA
1 CCAAATCCTATA
14747444 TCTAGTAAGT
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
99 1 0.01
100 82 0.87
101 11 0.12
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (101 bp):
CCAAATCCTATACCCCTGAAGTTGCAGTAGATCAGATTAAAGCTATGAAAGCAAATCCTTATCTA
TCTGAACTTGCAGTAGAGCAAGATGAAGCTACAAAA
Found at i:14747805 original size:13 final size:13
Alignment explanation
Indices: 14747772--14747806 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
14747762 AAAATCCAAT
14747772 TTTATTTATTTTA
1 TTTATTTATTTTA
14747785 TATT-TTTATTTTA
1 T-TTATTTATTTTA
14747798 TTTATTTAT
1 TTTATTTAT
14747807 CATTTTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.10
13 16 0.80
14 2 0.10
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:14747814 original size:21 final size:22
Alignment explanation
Indices: 14747770--14747812 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14747760 TTAAAATCCA
14747770 ATTTTATTTATTTTATATTTTT
1 ATTTTATTTATTTTATATTTTT
14747792 ATTTTATTTA-TTTATCATTTT
1 ATTTTATTTATTTTAT-ATTTT
14747813 ATAAATGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTTATTTATTTTATATTTTT
Found at i:14747925 original size:14 final size:14
Alignment explanation
Indices: 14747908--14747945 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
14747898 ACTTTATTTA
14747908 TTTATTTATATATT
1 TTTATTTATATATT
*
14747922 TTTATTTATCTATT
1 TTTATTTATATATT
*
14747936 TATATTTATA
1 TTTATTTATA
14747946 AATAAATACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATTTATATATT
Found at i:14747925 original size:18 final size:18
Alignment explanation
Indices: 14747902--14747944 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14747892 ATTTTAACTT
*
14747902 TATTTATTTATTTATATA
1 TATTTATTTATCTATATA
* *
14747920 TTTTTATTTATCTATTTA
1 TATTTATTTATCTATATA
14747938 TATTTAT
1 TATTTAT
14747945 AAATAAATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTTATTTATCTATATA
Found at i:14748928 original size:30 final size:29
Alignment explanation
Indices: 14748894--14749151 Score: 259
Period size: 30 Copynumber: 8.7 Consensus size: 29
14748884 CAAACTATCA
*
14748894 AAAAATTTAAATTTGACACCTAAATTTTCC
1 AAAAATTCAAATTTGAC-CCTAAATTTTCC
* *
14748924 AAAAATTCAAAATTT-ACCTTAAACTTTCC
1 AAAAATTC-AAATTTGACCCTAAATTTTCC
**
14748953 AAAAATTTGAATTTGACCCTTAAATTTTCC
1 AAAAATTCAAATTTGACCC-TAAATTTTCC
* *
14748983 AAAAATTCCAATTTGACCCTTAAATTTTCA
1 AAAAATTCAAATTTGACCC-TAAATTTTCC
* * *
14749013 AAAAATTTAAATTTAATCCCCAAATTTTCC
1 AAAAATTCAAATTTGA-CCCTAAATTTTCC
* *
14749043 AAAAATTCAAATTTGACCCCTGAATTTTTC
1 AAAAATTCAAATTTGA-CCCTAAATTTTCC
* * *
14749073 AAAAATTTAAATTTGACCTTTAAACTTTT-T
1 AAAAATTCAAATTTGACC-CTAAA-TTTTCC
* * *
14749103 AGAAATTCGAATTTAACCCCTAAATTTTCC
1 AAAAATTCAAATTTGA-CCCTAAATTTTCC
14749133 AAAAATTCAAATTTGACCC
1 AAAAATTCAAATTTGACCC
14749152 GATTTTAACG
Statistics
Matches: 186, Mismatches: 34, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
28 5 0.03
29 29 0.16
30 137 0.74
31 15 0.08
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAAATTCAAATTTGACCCTAAATTTTCC
Found at i:14749069 original size:90 final size:89
Alignment explanation
Indices: 14748894--14749151 Score: 297
Period size: 90 Copynumber: 2.9 Consensus size: 89
14748884 CAAACTATCA
* ** *
14748894 AAAAATTTAAATTTGACACC-TAAATTTTCCAAAAATTCAAAATTT-ACCTTAAACTTTCCAAAA
1 AAAAATTTAAATTTGAC-CCTTAAATTTTCAAAAAATT-AAAATTTAACCCCAAATTTTCCAAAA
** *
14748957 ATTTGAATTTGACCCTTAAATTTTCC
64 ATTCAAATTTGACCCCTAAATTTTCC
** *
14748983 AAAAATTCCAATTTGACCCTTAAATTTTCAAAAAATTTAAATTTAATCCCCAAATTTTCCAAAAA
1 AAAAATTTAAATTTGACCCTTAAATTTTCAAAAAATTAAAATTTAA-CCCCAAATTTTCCAAAAA
* *
14749048 TTCAAATTTGACCCCTGAATTTTTC
65 TTCAAATTTGACCCCTAAATTTTCC
* * * **
14749073 AAAAATTTAAATTTGACCTTTAAACTTTT-TAGAAATTCGAATTTAACCCCTAAATTTTCCAAAA
1 AAAAATTTAAATTTGACCCTTAAA-TTTTCAAAAAATTAAAATTTAACCCC-AAATTTTCCAAAA
14749137 ATTCAAATTTGACCC
64 ATTCAAATTTGACCC
14749152 GATTTTAACG
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
88 8 0.06
89 36 0.25
90 97 0.67
91 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (89 bp):
AAAAATTTAAATTTGACCCTTAAATTTTCAAAAAATTAAAATTTAACCCCAAATTTTCCAAAAAT
TCAAATTTGACCCCTAAATTTTCC
Found at i:14749245 original size:21 final size:20
Alignment explanation
Indices: 14749204--14749246 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
14749194 CATATGTATA
* *
14749204 TTATTTTGTTTTGTTTTATT
1 TTATTTTGTTATGTATTATT
14749224 TTATTTTGTGTATGTATTATT
1 TTATTTTGT-TATGTATTATT
14749245 TT
1 TT
14749247 TTATTATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (20 bp):
TTATTTTGTTATGTATTATT
Found at i:14751664 original size:23 final size:22
Alignment explanation
Indices: 14751634--14751727 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 22
14751624 CATTGAAACC
14751634 ATTTTTCAATTTGATTTTATCA
1 ATTTTTCAATTTGATTTTATCA
* ** ** * *
14751656 ATTTGTTCAACTCCATTGAAACC
1 ATTT-TTCAATTTGATTTTATCA
14751679 ATTTTTCAATTTGATTTTATCA
1 ATTTTTCAATTTGATTTTATCA
14751701 ATTTGTTCAACTTT-ACTTTTATTCA
1 ATTT-TTCAA-TTTGA-TTTTA-TCA
14751726 AT
1 AT
14751728 AACACTTTAA
Statistics
Matches: 53, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
22 19 0.36
23 21 0.40
24 8 0.15
25 5 0.09
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.52
Consensus pattern (22 bp):
ATTTTTCAATTTGATTTTATCA
Found at i:14751684 original size:45 final size:45
Alignment explanation
Indices: 14751620--14751712 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
14751610 AAAATGTTTG
14751620 ACTCCATTGAAACCATTTTTCAATTTGATTTTATCAATTTGTTCA
1 ACTCCATTGAAACCATTTTTCAATTTGATTTTATCAATTTGTTCA
14751665 ACTCCATTGAAACCATTTTTCAATTTGATTTTATCAATTTGTTCA
1 ACTCCATTGAAACCATTTTTCAATTTGATTTTATCAATTTGTTCA
14751710 ACT
1 ACT
14751713 TTACTTTTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.46
Consensus pattern (45 bp):
ACTCCATTGAAACCATTTTTCAATTTGATTTTATCAATTTGTTCA
Found at i:14763515 original size:21 final size:20
Alignment explanation
Indices: 14763491--14763529 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14763481 AATAAAATTA
14763491 TTAAATATTTATAAAAAATAT
1 TTAAAT-TTTATAAAAAATAT
*
14763512 TTAAATTTTATTAAAAAT
1 TTAAATTTTATAAAAAAT
14763530 TAAAAAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAATTTTATAAAAAATAT
Found at i:14763566 original size:21 final size:20
Alignment explanation
Indices: 14763478--14763566 Score: 56
Period size: 21 Copynumber: 4.2 Consensus size: 20
14763468 AATGACAAAA
14763478 AATAATAAAATTATTAAATATTT
1 AATAA-AAAATTA-TAAAT-TTT
*
14763501 -ATAAAAAATATTTAAATTTT
1 AATAAAAAAT-TATAAATTTT
* * * **
14763521 -ATTAAAAATTAAAAAGTAA
1 AATAAAAAATTATAAATTTT
14763540 ACATAAAAAATTATAAATTTAT
1 A-ATAAAAAATTATAAATTT-T
14763562 AATAA
1 AATAA
14763567 TTTTTATAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
19 5 0.10
20 11 0.22
21 28 0.56
22 6 0.12
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (20 bp):
AATAAAAAATTATAAATTTT
Found at i:14768499 original size:16 final size:16
Alignment explanation
Indices: 14768475--14768505 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14768465 TTTTGTTGGT
*
14768475 TGTTGCTTCTCATGGA
1 TGTTACTTCTCATGGA
14768491 TGTTACTTCTCATGG
1 TGTTACTTCTCATGG
14768506 CTGCTAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (16 bp):
TGTTACTTCTCATGGA
Found at i:14770168 original size:11 final size:11
Alignment explanation
Indices: 14770149--14770210 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
14770139 AAAACAACAT
*
14770149 CCAATATAAAG
1 CCAACATAAAG
*
14770160 CCAACATAAAAC
1 CCAACAT-AAAG
14770172 CCAACATAAAG
1 CCAACATAAAG
* *
14770183 CAAACATCAAG
1 CCAACATAAAG
* *
14770194 TCATCATAAAG
1 CCAACATAAAG
14770205 CCAACA
1 CCAACA
14770211 AAACACAGCA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
11 29 0.74
12 10 0.26
ACGTcount: A:0.53, C:0.27, G:0.06, T:0.13
Consensus pattern (11 bp):
CCAACATAAAG
Found at i:14770281 original size:24 final size:25
Alignment explanation
Indices: 14770248--14770311 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
14770238 TTAGGGTATT
*
14770248 AAAAATAACATACAAAACAA-AATA
1 AAAAACAACATACAAAACAATAATA
* * *
14770272 AAGAACAACATACAAAATAATATTA
1 AAAAACAACATACAAAACAATAATA
*
14770297 AAAAACAGCATACAA
1 AAAAACAACATACAA
14770312 GTCAGAATAG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 17 0.52
25 16 0.48
ACGTcount: A:0.69, C:0.14, G:0.03, T:0.14
Consensus pattern (25 bp):
AAAAACAACATACAAAACAATAATA
Found at i:14770308 original size:25 final size:24
Alignment explanation
Indices: 14770244--14770311 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
14770234 AGGTTTAGGG
14770244 TATTAAAAATA-ACATACAAAACAA
1 TATTAAAAA-ACACATACAAAACAA
* * *
14770268 -AATAAAGAACAACATACAAAATAA
1 TATTAAAAAAC-ACATACAAAACAA
14770292 TATTAAAAAACAGCATACAA
1 TATTAAAAAACA-CATACAA
14770312 GTCAGAATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.03
23 6 0.17
24 13 0.37
25 15 0.43
ACGTcount: A:0.66, C:0.13, G:0.03, T:0.18
Consensus pattern (24 bp):
TATTAAAAAACACATACAAAACAA
Found at i:14772159 original size:33 final size:33
Alignment explanation
Indices: 14772097--14772159 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
14772087 ACTATAAGAT
* * *
14772097 AAACAACCATTTACTACATCACTATCAAACCAA
1 AAACAAACATTTAATACAACACTATCAAACCAA
14772130 AAACAAACATTTAATACAACAC-ATGCAAAC
1 AAACAAACATTTAATACAACACTAT-CAAAC
14772160 ACTTTAACCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (33 bp):
AAACAAACATTTAATACAACACTATCAAACCAA
Found at i:14772528 original size:31 final size:32
Alignment explanation
Indices: 14772451--14772529 Score: 78
Period size: 31 Copynumber: 2.5 Consensus size: 32
14772441 CTAAATCCCA
*
14772451 AACA-ATGTTAATCAAAATTGAATACTAACCCT
1 AACATATGTTAA-CAAAATTGAATACTAAACCT
*
14772483 AA-AT-TAG-AATACAAAATTGAATACTAAACC-
1 AACATAT-GTTA-ACAAAATTGAATACTAAACCT
14772513 AACATATGTTAACAAAA
1 AACATATGTTAACAAAA
14772530 ATATGTGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
30 2 0.05
31 30 0.79
32 6 0.16
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.25
Consensus pattern (32 bp):
AACATATGTTAACAAAATTGAATACTAAACCT
Found at i:14773051 original size:21 final size:21
Alignment explanation
Indices: 14773019--14773065 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
14773009 GTTGGTATCT
14773019 ACGT-AGCAAGTTAACTAGCC
1 ACGTCAGCAAGTTAACTAGCC
* *
14773039 ACGTCAGCTAGTTAACTTGCC
1 ACGTCAGCAAGTTAACTAGCC
*
14773060 ATGTCA
1 ACGTCA
14773066 TCATGCTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (21 bp):
ACGTCAGCAAGTTAACTAGCC
Found at i:14780167 original size:12 final size:12
Alignment explanation
Indices: 14780150--14780192 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
14780140 AAATAGACTT
14780150 TAATTTTTTATA
1 TAATTTTTTATA
14780162 TAATTTTTTAT-
1 TAATTTTTTATA
* *
14780173 TAATTTATTACA
1 TAATTTTTTATA
*
14780185 CAATTTTT
1 TAATTTTT
14780193 CATACATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (12 bp):
TAATTTTTTATA
Found at i:14780175 original size:23 final size:23
Alignment explanation
Indices: 14780149--14780192 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14780139 AAAATAGACT
* * *
14780149 TTAATTTTTTATATAATTTTTTA
1 TTAATTTATTACACAATTTTTTA
14780172 TTAATTTATTACACAATTTTT
1 TTAATTTATTACACAATTTTT
14780193 CATACATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (23 bp):
TTAATTTATTACACAATTTTTTA
Found at i:14782008 original size:19 final size:19
Alignment explanation
Indices: 14781986--14782022 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14781976 TATTTTTATG
14781986 TATTTTATACAATTTTTTC
1 TATTTTATACAATTTTTTC
**
14782005 TATTTTATGTAATTTTTT
1 TATTTTATACAATTTTTT
14782023 TGAATGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (19 bp):
TATTTTATACAATTTTTTC
Found at i:14786359 original size:70 final size:70
Alignment explanation
Indices: 14786246--14786385 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
14786236 TTTAAAAGCT
*
14786246 TTCACCTTTTCTCAGACTTTGTGTAAAAGCTCGATTTTTAGTGATGTCGGAAACAGTGATTTCGG
1 TTCACCTTTTCTCAGACTTTGTGTAAAAGCCCGATTTTTAGTGATGTCGGAAACAGTGATTTCGG
14786311 GATCA
66 GATCA
14786316 TTCACCTTTTCTCAGACTTTGTGTAAAAGCCCGATTTTTAGTGATGTCGGAAACAGTGATTTCGG
1 TTCACCTTTTCTCAGACTTTGTGTAAAAGCCCGATTTTTAGTGATGTCGGAAACAGTGATTTCGG
14786381 GATCA
66 GATCA
14786386 CAAATTTGAC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (70 bp):
TTCACCTTTTCTCAGACTTTGTGTAAAAGCCCGATTTTTAGTGATGTCGGAAACAGTGATTTCGG
GATCA
Found at i:14822927 original size:13 final size:13
Alignment explanation
Indices: 14822909--14822934 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14822899 ACGTTTCCCC
14822909 GACAAATTTATTG
1 GACAAATTTATTG
14822922 GACAAATTTATTG
1 GACAAATTTATTG
14822935 ACGCACCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
GACAAATTTATTG
Found at i:14828278 original size:12 final size:12
Alignment explanation
Indices: 14828254--14828288 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
14828244 AATTGGATCA
14828254 TTTCTCATTTTCG
1 TTTC-CATTTTCG
*
14828267 TTTCCGTTTTCG
1 TTTCCATTTTCG
14828279 TTTCCATTTT
1 TTTCCATTTT
14828289 TGAGAAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.06, C:0.23, G:0.09, T:0.63
Consensus pattern (12 bp):
TTTCCATTTTCG
Found at i:14830732 original size:5 final size:5
Alignment explanation
Indices: 14830722--14830771 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
14830712 TTGCAACGAG
* * *
14830722 ATTTT ATTTT ATTTT ACTTT ATTTT -TTTC A-TTT ATTTT TTTTT AATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT -ATTTT
14830771 A
1 A
14830772 ATATTTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
4 6 0.17
5 26 0.72
6 4 0.11
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:14830755 original size:13 final size:14
Alignment explanation
Indices: 14830724--14830762 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
14830714 GCAACGAGAT
*
14830724 TTTATTTTATTTTAC
1 TTTATTTT-TTTCAC
14830739 TTTATTTTTTTCA-
1 TTTATTTTTTTCAC
14830752 TTTATTTTTTT
1 TTTATTTTTTT
14830763 TTAATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 4 0.17
15 8 0.35
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTTTTTCAC
Found at i:14836585 original size:55 final size:56
Alignment explanation
Indices: 14836469--14836595 Score: 152
Period size: 55 Copynumber: 2.3 Consensus size: 56
14836459 GACAAATACT
* *
14836469 CTGTATTCTAGCTCGAAAGACTGTTACTCTGTATTCTTGCTCGAAAGAACGTTACG
1 CTGTATTCTGGCTCGAAAGACTGTTACTCTGTATTCTAGCTCGAAAGAACGTTACG
* * * **
14836525 CTGTATTCTGGCTTGAAAGAGC-G-TACTCTGTATTCTAGTTCGAAAGAGCGTTATT
1 CTGTATTCTGGCTCGAAAGA-CTGTTACTCTGTATTCTAGCTCGAAAGAACGTTACG
*
14836580 TTGTA-TCTGGCTCGAA
1 CTGTATTCTGGCTCGAA
14836596 TGACCAATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
54 10 0.16
55 31 0.51
56 19 0.31
57 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGTATTCTGGCTCGAAAGACTGTTACTCTGTATTCTAGCTCGAAAGAACGTTACG
Found at i:14836594 original size:27 final size:28
Alignment explanation
Indices: 14836465--14836595 Score: 151
Period size: 28 Copynumber: 4.8 Consensus size: 28
14836455 GCTTGACAAA
14836465 TACTCTGTATTCTAGCTCGAAAGA-CTGT
1 TACTCTGTATTCTAGCTCGAAAGAGC-GT
* *
14836493 TACTCTGTATTCTTGCTCGAAAGAACGT
1 TACTCTGTATTCTAGCTCGAAAGAGCGT
* * *
14836521 TACGCTGTATTCTGGCTTGAAAGAGCG-
1 TACTCTGTATTCTAGCTCGAAAGAGCGT
*
14836548 TACTCTGTATTCTAGTTCGAAAGAGCGT
1 TACTCTGTATTCTAGCTCGAAAGAGCGT
* * *
14836576 TATTTTGTA-TCTGGCTCGAA
1 TACTCTGTATTCTAGCTCGAA
14836596 TGACCAATAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
27 32 0.36
28 55 0.62
29 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (28 bp):
TACTCTGTATTCTAGCTCGAAAGAGCGT
Found at i:14838123 original size:14 final size:14
Alignment explanation
Indices: 14838104--14838132 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14838094 ACCTATGAAA
14838104 TGGTTAAAGAATAC
1 TGGTTAAAGAATAC
14838118 TGGTTAAAGAATAC
1 TGGTTAAAGAATAC
14838132 T
1 T
14838133 TAGAGAGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (14 bp):
TGGTTAAAGAATAC
Found at i:14839219 original size:12 final size:12
Alignment explanation
Indices: 14839202--14839242 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
14839192 TTGATGCAAA
14839202 ATCAAAGTTAAT
1 ATCAAAGTTAAT
*
14839214 ATCAAAGTTCAAC
1 ATCAAAGTT-AAT
14839227 ATCAAAGTTAAT
1 ATCAAAGTTAAT
14839239 ATCA
1 ATCA
14839243 TTCTAGTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (12 bp):
ATCAAAGTTAAT
Found at i:14839525 original size:19 final size:18
Alignment explanation
Indices: 14839503--14839554 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
14839493 TCACGTCAAC
*
14839503 AAATGAATTTAAACTTAAA
1 AAATGAA-TTAAAATTAAA
*
14839522 AAATTAATTAAAATTAAA
1 AAATGAATTAAAATTAAA
* *
14839540 AAATTATTTAAAATT
1 AAATGAATTAAAATT
14839555 TTTTTGGGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 24 0.80
19 6 0.20
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATGAATTAAAATTAAA
Found at i:14839538 original size:18 final size:18
Alignment explanation
Indices: 14839511--14839554 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
14839501 ACAAATGAAT
*
14839511 TTAAACTTAAAAAATTAA
1 TTAAAATTAAAAAATTAA
*
14839529 TTAAAATTAAAAAATTAT
1 TTAAAATTAAAAAATTAA
14839547 TTAAAATT
1 TTAAAATT
14839555 TTTTTGGGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAAATTAAAAAATTAA
Found at i:14840863 original size:14 final size:14
Alignment explanation
Indices: 14840846--14840875 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14840836 TTTAAACTCT
*
14840846 AAAAGATAAATCTA
1 AAAAGATAAATATA
14840860 AAAAGATAAATATA
1 AAAAGATAAATATA
14840874 AA
1 AA
14840876 TTAAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAGATAAATATA
Found at i:14845856 original size:14 final size:14
Alignment explanation
Indices: 14845839--14845868 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14845829 TTTAAACTCT
*
14845839 AAAAGATAAATTTA
1 AAAAGATAAATATA
14845853 AAAAGATAAATATA
1 AAAAGATAAATATA
14845867 AA
1 AA
14845869 TTAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAAGATAAATATA
Found at i:14845875 original size:11 final size:11
Alignment explanation
Indices: 14845859--14845891 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14845849 TTTAAAAAGA
14845859 TAAATATAAAT
1 TAAATATAAAT
14845870 TAAATA-AAAGT
1 TAAATATAAA-T
14845881 TAAATATAAAT
1 TAAATATAAAT
14845892 AATATCCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.15
11 14 0.70
12 3 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
TAAATATAAAT
Found at i:14847195 original size:31 final size:30
Alignment explanation
Indices: 14847157--14847230 Score: 98
Period size: 30 Copynumber: 2.4 Consensus size: 30
14847147 ATCAAAATTA
14847157 TTTAATAATTTTAT-TGT-TTCAAAAAAATAAT
1 TTTAATAATTTTATAT-TCTT--AAAAAATAAT
*
14847188 TTTAATAATTTTATATTCTTAGAAAATAAT
1 TTTAATAATTTTATATTCTTAAAAAATAAT
14847218 TTTAATAATTTTA
1 TTTAATAATTTTA
14847231 AAATCATTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
30 22 0.55
31 15 0.38
32 3 0.08
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (30 bp):
TTTAATAATTTTATATTCTTAAAAAATAAT
Found at i:14847580 original size:12 final size:12
Alignment explanation
Indices: 14847527--14847589 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
14847517 TAAAAGCCCA
*
14847527 AAGTCCAAATTC
1 AAGTCCAAATAC
14847539 AATGTCCAAATAC
1 AA-GTCCAAATAC
* * *
14847552 AAATCAAAAGA-
1 AAGTCCAAATAC
14847563 AAGTCCAAATAC
1 AAGTCCAAATAC
* *
14847575 ATGTCCAATTAC
1 AAGTCCAAATAC
14847587 AAG
1 AAG
14847590 GCCCAATTGG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
11 8 0.21
12 20 0.51
13 11 0.28
ACGTcount: A:0.49, C:0.21, G:0.10, T:0.21
Consensus pattern (12 bp):
AAGTCCAAATAC
Found at i:14849559 original size:30 final size:29
Alignment explanation
Indices: 14849491--14849586 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 29
14849481 CCCTAGAGGT
*
14849491 CCCT-AAACTA-TCCAAAAATTATATTTTA
1 CCCTAAAACTACTCC-AAAATTACATTTTA
* *
14849519 ACCTCGAAACTACTCCAAAATTACATTTTGA
1 CCCT-AAAACTACTCCAAAATTACATTTT-A
* *
14849550 CCCTAAAACTTCT-AAAAATTACATTTTTA
1 CCCTAAAACTACTCCAAAATTACA-TTTTA
14849579 CCCCTAAA
1 -CCCTAAA
14849587 TTTCCAAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
28 3 0.05
29 10 0.18
30 36 0.64
31 7 0.12
ACGTcount: A:0.41, C:0.25, G:0.02, T:0.32
Consensus pattern (29 bp):
CCCTAAAACTACTCCAAAATTACATTTTA
Found at i:14849573 original size:29 final size:29
Alignment explanation
Indices: 14849491--14849699 Score: 183
Period size: 29 Copynumber: 7.1 Consensus size: 29
14849481 CCCTAGAGGT
* *
14849491 CCCTAAACTATCCAAAAATTATA-TTTTAA
1 CCCTAAACT-TCCAAAAATTACATTTTTGA
*
14849520 CCTCGAAACTACTCC-AAAATTACA-TTTTGA
1 CC-CTAAACT--TCCAAAAATTACATTTTTGA
*
14849550 CCCTAAAACTTCTAAAAATTACATTTTT-A
1 CCCT-AAACTTCCAAAAATTACATTTTTGA
* * *
14849579 CCCCTAAATTTCCAAAAATTCCATTTTTGG
1 -CCCTAAACTTCCAAAAATTACATTTTTGA
* ** *
14849609 CCTTAAAACTTTTAAAAATTACATTTTTGC
1 CCCT-AAACTTCCAAAAATTACATTTTTGA
** *
14849639 CCCCGAACTTCCAAAAATTCCATTTTTGA
1 CCCTAAACTTCCAAAAATTACATTTTTGA
* *
14849668 CCCTGAACTTCCAAAAATTCCATTTTTGA
1 CCCTAAACTTCCAAAAATTACATTTTTGA
14849697 CCC
1 CCC
14849700 CGAAACTCCC
Statistics
Matches: 148, Mismatches: 24, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
28 2 0.01
29 87 0.59
30 56 0.38
31 3 0.02
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTCCAAAAATTACATTTTTGA
Found at i:14849607 original size:59 final size:59
Alignment explanation
Indices: 14849491--14849723 Score: 215
Period size: 59 Copynumber: 3.9 Consensus size: 59
14849481 CCCTAGAGGT
* * * * * *
14849491 CCCT-AAACTATCCAAAAATTATATTTTAACCTCGAAACTACTCC-AAAATTACA-TTTTGA
1 CCCTAAAACT-TCTAAAAATTACATTTTTACCCCCAAACT--TCCAAAAATTCCATTTTTGA
* * *
14849550 CCCTAAAACTTCTAAAAATTACATTTTTACCCCTAAATTTCCAAAAATTCCATTTTTGG
1 CCCTAAAACTTCTAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTGA
* * * *
14849609 CCTTAAAACTTTTAAAAATTACATTTTTGCCCCCGAACTTCCAAAAATTCCATTTTTGA
1 CCCTAAAACTTCTAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTGA
* * * * **
14849668 CCCT-GAACTTCCAAAAATTCCATTTTTGACCCCGAAAC-TCCCGAAATTACCATTTT
1 CCCTAAAACTTCTAAAAATTACATTTTT-ACCCCCAAACTTCCAAAAATT-CCATTTT
14849724 ACCTCTGGAT
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
57 3 0.02
58 35 0.24
59 101 0.70
60 5 0.03
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (59 bp):
CCCTAAAACTTCTAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTGA
Found at i:14849722 original size:88 final size:88
Alignment explanation
Indices: 14849491--14849723 Score: 199
Period size: 88 Copynumber: 2.6 Consensus size: 88
14849481 CCCTAGAGGT
* * *
14849491 CCCTAAACTATCCAAAAATT--ATATTTTAACCTCGAAACTACTCC-AAAATTACA-TTTTGACC
1 CCCTAAACT-TCCAAAAATTCCAT-TTTTGACCCCAAAACT--TCCAAAAATTACATTTTTG-CC
*** *
14849552 CTAAAACTTCTAAAAATTACATTTTTAC
61 CCCGAACTTCCAAAAATTACATTTTTAC
* * ** **
14849580 CCCTAAATTTCCAAAAATTCCATTTTTGGCCTTAAAACTTTTAAAAATTACATTTTTGCCCCCGA
1 CCCTAAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACATTTTTGCCCCCGA
*
14849645 ACTTCCAAAAATTCCATTTTTGA-
66 ACTTCCAAAAATTACATTTTT-AC
* * **
14849668 CCCTGAACTTCCAAAAATTCCATTTTTGACCCCGAAAC-TCCCGAAATTACCATTTT
1 CCCTAAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTA-CATTTT
14849724 ACCTCTGGAT
Statistics
Matches: 116, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
87 8 0.07
88 80 0.69
89 26 0.22
90 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (88 bp):
CCCTAAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACATTTTTGCCCCCGA
ACTTCCAAAAATTACATTTTTAC
Found at i:14849823 original size:59 final size:59
Alignment explanation
Indices: 14849711--14849870 Score: 162
Period size: 59 Copynumber: 2.7 Consensus size: 59
14849701 GAAACTCCCG
* * * * *
14849711 AAATTACCATTTTACCTCTGGATGTCCAAAAATCTCATTTTTCATCTCGAATTTTTCTAA
1 AAATTACCATTTTACC-CTCGATGTCCAAAAATATCATTTTTAATCTCAAATTTTTCCAA
* * *
14849771 AAATTATCATTTTACCCTCGATTGT-CTAAAATATCATTTTTAA-CTCCAAATTTTTCCCA
1 AAATTACCATTTTACCCTCGA-TGTCCAAAAATATCATTTTTAATCT-CAAATTTTTCCAA
* * * *
14849830 AAATTACCATTTTACCCCCGAGAGTCCAAAATTACCATTTT
1 AAATTACCATTTTACCCTCGA-TGTCCAAAAATATCATTTT
14849871 ATTCCTGGAC
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
58 2 0.02
59 50 0.61
60 30 0.37
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (59 bp):
AAATTACCATTTTACCCTCGATGTCCAAAAATATCATTTTTAATCTCAAATTTTTCCAA
Found at i:14849923 original size:148 final size:145
Alignment explanation
Indices: 14849711--14850204 Score: 595
Period size: 148 Copynumber: 3.4 Consensus size: 145
14849701 GAAACTCCCG
** * * *
14849711 AAATTACCATTTTACCTCTGGATGTCCAAAAA-TCTCATTTTTCATCTCGAATTTTTCTAAAAAT
1 AAATTACCATTTTACC-CTGGACATCCAAAAAGTCTCATTTTTTATCTCG-ATTCTTCCAAAAAT
* * *
14849775 TATCATTTTACCCTCGATTGTCTAAAATATCATTTTTAACTCC-AAATTTTTCCCAAAATTACCA
64 TACCATTTTACCCTCAAGTGTCTAAAATATCATTTTTAAC-CCTAAATTTTTCCCAAAATTACCA
14849839 TTTTACCCCCGAGAGTCCA
128 TTTT-CCCCCGAGAGTCCA
*
14849858 AAATTACCATTTTATTCCTGGACATCCAAAAAGTC-CTATTTTTTATCTCGATTCTTCCAAAAAA
1 AAATTACCATTTTA-CCCTGGACATCCAAAAAGTCTC-ATTTTTTATCTCGATTCTTCC-AAAAA
* * *
14849922 TTACCGTTTAACCCTCAAGTGTCTAAAATATCATTTTTAACCCTAAA-ATTTCCCAAAAATTACC
63 TTACCATTTTACCCTCAAGTGTCTAAAATATCATTTTTAACCCTAAATTTTTCCC-AAAATTACC
14849986 ATTTTGCCCCCGAGAGTCCA
127 ATTTT-CCCCCGAGAGTCCA
* *
14850006 AAATTACCATTTTGCCCTCGAGCATCCAAAAAGTCTCATTTTTTTATC-CTGATTCTTCCAAAAA
1 AAATTACCATTTTACCCTGGA-CATCCAAAAAGTCTCA-TTTTTTATCTC-GATTCTTCCAAAAA
* * *
14850070 TTACCATTTTACCCTTAAGTGTCTAAAATGTCATTTTTAACCCTAAATTTTT-CTAAAATTACCA
63 TTACCATTTTACCCTCAAGTGTCTAAAATATCATTTTTAACCCTAAATTTTTCCCAAAATTACCA
** *
14850134 TTTTCCCCTAATAGTCCA
128 TTTTCCCCCGAGAGTCCA
* * ** * *
14850152 AAATTATCATTTTACCCCGGTTATCCAAAATGTCTCATTTTTTAATCCCGATT
1 AAATTACCATTTTACCCTGGACATCCAAAAAGTCTCATTTTTT-ATCTCGATT
14850205 GCACCGTTCT
Statistics
Matches: 302, Mismatches: 32, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
144 6 0.02
145 21 0.07
146 28 0.09
147 61 0.20
148 164 0.54
149 22 0.07
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (145 bp):
AAATTACCATTTTACCCTGGACATCCAAAAAGTCTCATTTTTTATCTCGATTCTTCCAAAAATTA
CCATTTTACCCTCAAGTGTCTAAAATATCATTTTTAACCCTAAATTTTTCCCAAAATTACCATTT
TCCCCCGAGAGTCCA
Found at i:14850008 original size:29 final size:29
Alignment explanation
Indices: 14849974--14850037 Score: 96
Period size: 28 Copynumber: 2.2 Consensus size: 29
14849964 CTAAAATTTC
14849974 CCAAAAATTACCATTTTGCCCCCGAG-AGT
1 CCAAAAATTACCATTTTGCCCCCGAGCA-T
*
14850003 CC-AAAATTACCATTTTGCCCTCGAGCAT
1 CCAAAAATTACCATTTTGCCCCCGAGCAT
14850031 CCAAAAA
1 CCAAAAA
14850038 GTCTCATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.34, C:0.31, G:0.11, T:0.23
Consensus pattern (29 bp):
CCAAAAATTACCATTTTGCCCCCGAGCAT
Found at i:14855808 original size:32 final size:31
Alignment explanation
Indices: 14855748--14855809 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
14855738 AACTCAGATT
* * *
14855748 CAAAAAAAAGAGGAGAAAGAAAAAAGAAAAG
1 CAAAAAAAAGAAGAAAAACAAAAAAGAAAAG
*
14855779 CAAAAAACAAGAAGAAAAACAAAATAGAAAA
1 CAAAAAA-AAGAAGAAAAACAAAAAAGAAAA
14855810 AGGGAGAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 7 0.27
32 19 0.73
ACGTcount: A:0.76, C:0.06, G:0.16, T:0.02
Consensus pattern (31 bp):
CAAAAAAAAGAAGAAAAACAAAAAAGAAAAG
Found at i:14857260 original size:48 final size:50
Alignment explanation
Indices: 14857133--14857349 Score: 162
Period size: 51 Copynumber: 4.4 Consensus size: 50
14857123 CCATAAATAC
*
14857133 AAAGATCTAAGACCGCAACGGCGAA-CC-GTGCACCTCAAAAGATGCAAAGGG
1 AAAGATCTAAGACCGCAACGGCGAATCCAGT--ACCACAAAAGATG-AAAGGG
* * * * * * *
14857184 GAAGATCTAAGACCACAATGACGGATCCAATACCACAAAA-ATG-ACGGG
1 AAAGATCTAAGACCGCAACGGCGAATCCAGTACCACAAAAGATGAAAGGG
* *
14857232 AAAGATCTAAGACCGCAACGGCGAATCCAGTACCGC-AAAGATACAAAAGGG
1 AAAGATCTAAGACCGCAACGGCGAATCCAGTACCACAAAAGAT--GAAAGGG
* * * * * * *
14857283 AAAGGTCTAAG-TCGCAACGGCGGA-CCGTGTACCTCAGAAGCATG-AAGAG
1 AAAGATCTAAGACCGCAACGGCGAATCC-AGTACCACAAAAG-ATGAAAGGG
14857332 AAAGATCTAAGACCGCAA
1 AAAGATCTAAGACCGCAA
14857350 TGGCATCTAA
Statistics
Matches: 129, Mismatches: 27, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
47 3 0.02
48 35 0.27
49 16 0.12
50 25 0.19
51 45 0.35
52 4 0.03
53 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.12
Consensus pattern (50 bp):
AAAGATCTAAGACCGCAACGGCGAATCCAGTACCACAAAAGATGAAAGGG
Found at i:14857608 original size:92 final size:92
Alignment explanation
Indices: 14857484--14858585 Score: 1947
Period size: 92 Copynumber: 12.0 Consensus size: 92
14857474 CAGATCAAAA
*
14857484 AAACATCAATTCTTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCT-AC
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGA-
*
14857548 AGTTGTAGTAAGAGCAAGATAAAGCATC
65 AGTTGTAGTAAGAGCAAGATGAAGCATC
*
14857576 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
*
14857641 GTTGTAGTAAGAGCAAGATGAAACATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
*
14857668 AAACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
14857733 GTTGTAGTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
14857760 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
* *
14857825 GTTGTAGTAAGAGCAAGGTGAAGCATT
66 GTTGTAGTAAGAGCAAGATGAAGCATC
* *
14857852 AAACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATAGCAAGTCTTTATCTCTTTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
* * *
14857917 GTTGTACTAAGAGCAAGATAAAGCATT
66 GTTGTAGTAAGAGCAAGATGAAGCATC
* *
14857944 AAACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGTTGGATAGCAAGTCTTTATCT-TGCTAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCT-CTGA
*
14858008 AGTTGTAGTAAGAGCAAGATGAAGCATA
65 AGTTGTAGTAAGAGCAAGATGAAGCATC
*
14858036 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTAAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
14858101 GTTGTAGTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
* **
14858128 AAACATCAATTCCTATCCTCTTGAAGTTATAGTAATCTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
14858193 GTTGTAGTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
* *
14858220 AAACATCAATTCCTATCCTGTTGAAGTTGTACTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
*
14858285 GTTGTACTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
14858312 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
14858377 GTTGTAGTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
14858404 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
14858469 GTTGTAGTAAGAGCAAGATGAAGCATC
66 GTTGTAGTAAGAGCAAGATGAAGCATC
* *
14858496 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGATTGGATAACAAGTCTTTATCTCTCTAA
1 AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAG-TTGGATAGCAAGTCTTTATCTCTCTGA
14858561 AGTTGTAGTAAGAGCAAGATGAAGC
65 AGTTGTAGTAAGAGCAAGATGAAGC
14858586 TTCGGTACCA
Statistics
Matches: 969, Mismatches: 37, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
91 1 0.00
92 916 0.95
93 52 0.05
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (92 bp):
AAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
GTTGTAGTAAGAGCAAGATGAAGCATC
Found at i:14857641 original size:40 final size:40
Alignment explanation
Indices: 14857593--14857834 Score: 121
Period size: 40 Copynumber: 5.5 Consensus size: 40
14857583 AATTCCTATC
14857593 CTCT-TGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCAT
1 CTCTCTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCAT
* * * * *
14857632 CTCTCTGAAGTTGTAGTAAGAGCAAGATGAAACATCAAACATCAATTCCTAT
1 CTCTCTGAAGTTGTAGT---A--AAGTTG-GATAGC-AA-GTC--TT-C-AT
* *
14857684 C-CTCTTGAAGTTGCAGTAAAGTTGGATAGCAAGTCTTTAT
1 CTCTC-TGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCAT
*** *
14857724 CTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTAT
1 CTCTCTGAAGTTGTAGTAA-AGTTGGAT--AG---C-AA-GTC--TT-C-AT
*
14857776 C-CTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTAT
1 CTCTC-TGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCAT
14857816 CTCTCTGAAGTTGTAGTAA
1 CTCTCTGAAGTTGTAGTAA
14857835 GAGCAAGGTG
Statistics
Matches: 151, Mismatches: 23, Indels: 57
0.65 0.10 0.25
Matches are distributed among these distances:
39 4 0.03
40 45 0.30
41 11 0.07
42 4 0.03
43 3 0.02
44 4 0.03
45 9 0.06
46 8 0.05
47 9 0.06
48 4 0.03
49 3 0.02
50 4 0.03
51 12 0.08
52 31 0.21
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (40 bp):
CTCTCTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTCAT
Found at i:14859196 original size:6 final size:6
Alignment explanation
Indices: 14859185--14859322 Score: 101
Period size: 6 Copynumber: 23.3 Consensus size: 6
14859175 GGTTTAAATG
** *
14859185 AATTTA AATTTA TTTTTA AATTTA AATTT- ATTTTA AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
** **
14859232 TCTTTTTA AATTTA AATTT- AA-TTA AATTTA AATTTA TCTTTTTA AATTTA
1 --AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA --AATTTA AATTTA
* *
14859282 AATTT- AA-TTA AATTTA AA-TT- CATTTA AATTTT AATATTA AA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AAT-TTA AA
14859323 AGCCCAAAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 23
0.71 0.13 0.16
Matches are distributed among these distances:
4 5 0.05
5 16 0.16
6 69 0.68
7 4 0.04
8 8 0.08
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (6 bp):
AATTTA
Found at i:14859282 original size:42 final size:36
Alignment explanation
Indices: 14859185--14859301 Score: 202
Period size: 36 Copynumber: 3.3 Consensus size: 36
14859175 GGTTTAAATG
*
14859185 AATTTAAATTTA--TTTTTAAATTTAAATTTATTTTA
1 AATTTAAATTTATCTTTTTAAATTTAAATTTA-ATTA
14859220 AATTTAAATTTATCTTTTTAAATTTAAATTTAATTA
1 AATTTAAATTTATCTTTTTAAATTTAAATTTAATTA
14859256 AATTTAAATTTATCTTTTTAAATTTAAATTTAATTA
1 AATTTAAATTTATCTTTTTAAATTTAAATTTAATTA
14859292 AATTTAAATT
1 AATTTAAATT
14859302 CATTTAAATT
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 12 0.15
36 49 0.62
37 18 0.23
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (36 bp):
AATTTAAATTTATCTTTTTAAATTTAAATTTAATTA
Found at i:14860086 original size:3 final size:3
Alignment explanation
Indices: 14860078--14860167 Score: 65
Period size: 3 Copynumber: 28.7 Consensus size: 3
14860068 TATAAACATC
* * *
14860078 AAT AAT AAT -AT TAT TAT AAAT AAT CAT AAT AATT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * *
14860124 AAAT ATT TAT AATT AAT ATT AAT ATT AAT AAAT AAT AAT AAT AA
1 -AAT AAT AAT AA-T AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
14860168 AAAGGAAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
2 2 0.03
3 54 0.77
4 14 0.20
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:14860114 original size:13 final size:12
Alignment explanation
Indices: 14860079--14860163 Score: 61
Period size: 13 Copynumber: 7.1 Consensus size: 12
14860069 ATAAACATCA
*
14860079 ATAATAA-TATT
1 ATAATAATTAAT
* *
14860090 ATTATAAATAAT
1 ATAATAATTAAT
14860102 CATAATAATTAAT
1 -ATAATAATTAAT
*
14860115 AATAATAATAAAT
1 -ATAATAATTAAT
*
14860128 ATTTATAATTAAT
1 A-TAATAATTAAT
14860141 ATTAAT-ATTAAT
1 A-TAATAATTAAT
14860153 A-AATAA-TAAT
1 ATAATAATTAAT
14860163 A
1 A
14860164 ATAAAAAGGA
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.13
11 7 0.11
12 11 0.18
13 35 0.57
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATAATTAAT
Found at i:14860165 original size:13 final size:13
Alignment explanation
Indices: 14860103--14860168 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
14860093 ATAAATAATC
*
14860103 ATAATAATTAATA
1 ATAATAATAAATA
14860116 ATAATAATAAATA
1 ATAATAATAAATA
* *
14860129 TTTATAATTAATATTA
1 ATAATAA-TAA-A-TA
*
14860145 ATATTAATAAATA
1 ATAATAATAAATA
14860158 ATAATAATAAA
1 ATAATAATAAA
14860169 AAGGAAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
13 29 0.67
14 4 0.09
15 4 0.09
16 6 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATAATAAATA
Found at i:14861420 original size:29 final size:29
Alignment explanation
Indices: 14861329--14861530 Score: 158
Period size: 29 Copynumber: 6.8 Consensus size: 29
14861319 GCCTTGGAGG
* * *
14861329 TCCCTAAACTGTCCGAAAATTATATTTTGAC
1 TCCC-AAACT-TCCAAAAATTACATTTTTAC
* * *
14861360 -CCAAAAACTTCTCCAAAATTACATTTTGAC
1 TCC-CAAACTTC-CAAAAATTACATTTTTAC
* *
14861390 TCCAAAACTTCCAAATATTACATTTTTAC
1 TCCCAAACTTCCAAAAATTACATTTTTAC
* * * *
14861419 TCCCGAATTTCCAAAAATTTCATTTTTGGGC
1 TCCCAAACTTCCAAAAATTACATTTTT--AC
* * *
14861450 T-CGAAACTTTCAAAAATTACATTTTTGC
1 TCCCAAACTTCCAAAAATTACATTTTTAC
*
14861478 TCCCAAACTTCCAAAAATTTCATTTTTAAC
1 TCCCAAACTTCCAAAAATTACATTTTT-AC
* *
14861508 -CCCGAACTTCCAAAAATTCCATT
1 TCCCAAACTTCCAAAAATTACATT
14861531 ATTGACCTCG
Statistics
Matches: 141, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
28 3 0.02
29 82 0.58
30 52 0.37
31 4 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (29 bp):
TCCCAAACTTCCAAAAATTACATTTTTAC
Found at i:14861502 original size:88 final size:89
Alignment explanation
Indices: 14861364--14861545 Score: 244
Period size: 88 Copynumber: 2.1 Consensus size: 89
14861354 TTTGACCCAA
* * *
14861364 AAACTTCTCCAAAATTACATTTTGACTCCAAAACTTCCAAATATTACATTTTT-ACTCCCGAATT
1 AAACTTCTCAAAAATTACATTTTGACTCCAAAACTTCCAAAAATTACATTTTTAAC-CCCGAACT
* * **
14861428 TCCAAAAATTTCATTTTTGGGCTCG
65 TCCAAAAATTCCATTATTGACCTCG
* *
14861453 AAACTT-TCAAAAATTACATTTTTG-CTCCCAAACTTCCAAAAATTTCATTTTTAACCCCGAACT
1 AAACTTCTCAAAAATTACA-TTTTGACTCCAAAACTTCCAAAAATTACATTTTTAACCCCGAACT
14861516 TCCAAAAATTCCATTATTGACCTCG
65 TCCAAAAATTCCATTATTGACCTCG
14861541 AAACT
1 AAACT
14861546 CCCGAAATTA
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
88 69 0.84
89 13 0.16
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (89 bp):
AAACTTCTCAAAAATTACATTTTGACTCCAAAACTTCCAAAAATTACATTTTTAACCCCGAACTT
CCAAAAATTCCATTATTGACCTCG
Found at i:14861545 original size:59 final size:59
Alignment explanation
Indices: 14861394--14861534 Score: 167
Period size: 59 Copynumber: 2.4 Consensus size: 59
14861384 TTTGACTCCA
* * * * * *** *
14861394 AAACTTCCAAATATTACATTTTTACTCCCGAATTTCCAAAAATTTCATTTTTGGGCTCG
1 AAACTTCCAAAAATTACATTATTGCTCCCAAACTTCCAAAAATTTCATTTTTAACCCCG
* *
14861453 AAACTTTCAAAAATTACATTTTTGCTCCCAAACTTCCAAAAATTTCATTTTTAACCCCG
1 AAACTTCCAAAAATTACATTATTGCTCCCAAACTTCCAAAAATTTCATTTTTAACCCCG
*
14861512 -AACTTCCAAAAATTCCATTATTG
1 AAACTTCCAAAAATTACATTATTG
14861535 ACCTCGAAAC
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
58 20 0.29
59 50 0.71
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (59 bp):
AAACTTCCAAAAATTACATTATTGCTCCCAAACTTCCAAAAATTTCATTTTTAACCCCG
Found at i:14861728 original size:147 final size:145
Alignment explanation
Indices: 14861576--14861979 Score: 571
Period size: 147 Copynumber: 2.8 Consensus size: 145
14861566 TTCGGATGTC
* * * * *
14861576 CAAAAA-TCCCATTTTTGATCCCGATTTTTTCTAAAAATTACCGTTTTATCCTTGATTGTCTAAA
1 CAAAAAGTCCCATTTTTTATCCCGATTCTTTC-AAAAATTACCGTTTTACCCTTAAGTGTCTAAA
* * * * *
14861640 ATATCATTTTTAACCCTAACTTTTTCCCAAAATTACCATTTTGCCGCCGAGAGTCTAAAATTACC
65 ATGTCATTTTTAACCCTAA-ATTTTCCCAAAATTACCATTTTGCCCCCAAGAGTCCAAAATTACC
14861705 ATTTTACCC-CTAAACATT
129 ATTTTACCCTC-AAACA-T
* *
14861723 CAAAAAGTCTCATTTTTTATCCCGATTCTTTCAAAAAATTACCGTTTTACCCTCAAGTGTCTAAA
1 CAAAAAGTCCCATTTTTTATCCCGATTCTTTC-AAAAATTACCGTTTTACCCTTAAGTGTCTAAA
* *
14861788 ATGTCATTTTTAACCCTAAATTTTCCTAAATTTACCATTTTGCCCCCAAGAGTCCAAAATTACCA
65 ATGTCATTTTTAACCCTAAATTTTCCCAAAATTACCATTTTGCCCCCAAGAGTCCAAAATTACCA
* *
14861853 TTTTACCCTCGAGCAT
130 TTTTACCCTCAAACAT
*
14861869 CTAAAAAGTCCCATTTTTTATCCCGATTCTTTC-AAAATTACCATTTTACCCTTAAGTGTCTAAA
1 C-AAAAAGTCCCATTTTTTATCCCGATTCTTTCAAAAATTACCGTTTTACCCTTAAGTGTCTAAA
*
14861933 ATGTCATTTTTAACCCTAAATTTTCCCAAAATTACCATTTTACCCCC
65 ATGTCATTTTTAACCCTAAATTTTCCCAAAATTACCATTTTGCCCCC
14861980 GGGTATCTAA
Statistics
Matches: 231, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
145 73 0.32
146 2 0.01
147 87 0.38
148 69 0.30
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (145 bp):
CAAAAAGTCCCATTTTTTATCCCGATTCTTTCAAAAATTACCGTTTTACCCTTAAGTGTCTAAAA
TGTCATTTTTAACCCTAAATTTTCCCAAAATTACCATTTTGCCCCCAAGAGTCCAAAATTACCAT
TTTACCCTCAAACAT
Found at i:14861906 original size:59 final size:58
Alignment explanation
Indices: 14861841--14862014 Score: 183
Period size: 58 Copynumber: 2.9 Consensus size: 58
14861831 CCCCAAGAGT
* *
14861841 CCAAAATTACCATTTTACCCTCGAGCATCTAAAAAGTCCCATTTTTTATCCCGATTCTT-
1 CCAAAATTACCATTTTACCCTCGAGTATCTAAAATGT-CCATTTTTTATCCCGATT-TTC
* ** * * *
14861900 TCAAAATTACCATTTTACCCTTAAGTGTCTAAAATGT-CA-TTTTTAACCCTAAATTTTC
1 CCAAAATTACCATTTTACCCTCGAGTATCTAAAATGTCCATTTTTTATCCC--GATTTTC
* *
14861958 CCAAAATTACCATTTTACCCCCGGGTATCTAAAATGTCTCATTTTTTAATCCCGATT
1 CCAAAATTACCATTTTACCCTCGAGTATCTAAAATGTC-CATTTTTT-ATCCCGATT
14862015 GCATCGTTCT
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
56 9 0.10
57 4 0.04
58 34 0.37
59 31 0.34
60 5 0.05
61 5 0.05
62 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (58 bp):
CCAAAATTACCATTTTACCCTCGAGTATCTAAAATGTCCATTTTTTATCCCGATTTTC
Found at i:14861977 original size:29 final size:28
Alignment explanation
Indices: 14861901--14861977 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 28
14861891 CCGATTCTTT
*
14861901 CAAAATTACCATTTTACCCTTAAGTGTC
1 CAAAATTACCATTTTACCCTAAAGTGTC
* * *
14861929 TAAAATGT--CATTTTTAACCCTAAATTTTCC
1 CAAAAT-TACCA-TTTT-ACCCTAAAGTGT-C
14861959 CAAAATTACCATTTTACCC
1 CAAAATTACCATTTTACCC
14861978 CCGGGTATCT
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
27 2 0.05
28 9 0.24
29 15 0.39
30 10 0.26
31 2 0.05
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.38
Consensus pattern (28 bp):
CAAAATTACCATTTTACCCTAAAGTGTC
Found at i:14862372 original size:96 final size:95
Alignment explanation
Indices: 14862208--14862388 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 95
14862198 AAAACTTTAA
* * * * **
14862208 AATCGAGGCAATATTCTTTTCTTTCGAGTTCGAAATTTTGCGCTTTAACTTACTAGGTGCGATTT
1 AATCGAGGCAATATTCTTATCTTTCGAGTTCGAAATTTTGCACCTTAACTTACTAGGTGCAACCT
14862273 TTCTTCAAATCGAA-ATAATCGAATACTCTT
66 TTCTTCAAATC-AAGATAATCGAATACTCTT
* * *
14862303 AATCGAGGCAATGTTTCCTTATCTTT-GATTTTGAAATTTTGCACCTTAACTTACTAGGTGCAAC
1 AATCGAGGCAAT-ATT-CTTATCTTTCGAGTTCGAAATTTTGCACCTTAACTTACTAGGTGCAAC
*
14862367 CTTTCTTTAAATCAAGATAATC
64 CTTTCTTCAAATCAAGATAATC
14862389 TAACATCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
95 14 0.19
96 51 0.70
97 8 0.11
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (95 bp):
AATCGAGGCAATATTCTTATCTTTCGAGTTCGAAATTTTGCACCTTAACTTACTAGGTGCAACCT
TTCTTCAAATCAAGATAATCGAATACTCTT
Found at i:14863462 original size:41 final size:41
Alignment explanation
Indices: 14863404--14863486 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
14863394 TCTCTTATAC
* *
14863404 CAAATAGAATTAGATTAACTCCAAAACCCTTAGAATCCTAA
1 CAAATAGAATTAAATTAACTCCAAAACCCTTAGAACCCTAA
*
14863445 CAAATAGAATTAAATTAACTCCAAAACTCTTAGAACCCTAA
1 CAAATAGAATTAAATTAACTCCAAAACCCTTAGAACCCTAA
14863486 C
1 C
14863487 CTCAAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (41 bp):
CAAATAGAATTAAATTAACTCCAAAACCCTTAGAACCCTAA
Found at i:14866713 original size:34 final size:34
Alignment explanation
Indices: 14866670--14866738 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
14866660 TCTTGTGCCC
14866670 CCTTCTATTTGCCTTCGCACCTTTTAACAAACCA
1 CCTTCTATTTGCCTTCGCACCTTTTAACAAACCA
14866704 CCTTCTATTTGCCTTCGCACCTTTTAACAAACCA
1 CCTTCTATTTGCCTTCGCACCTTTTAACAAACCA
14866738 C
1 C
14866739 TTTGCATAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.36, G:0.06, T:0.35
Consensus pattern (34 bp):
CCTTCTATTTGCCTTCGCACCTTTTAACAAACCA
Found at i:14870509 original size:24 final size:25
Alignment explanation
Indices: 14870469--14870518 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
14870459 TGTTCCTAAG
*
14870469 CCCAAATCCTATTAAAACCAATTAA
1 CCCAAACCCTATTAAAACCAATTAA
*
14870494 CCCAAACCCT-TTAAAACCCATTAA
1 CCCAAACCCTATTAAAACCAATTAA
14870518 C
1 C
14870519 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (25 bp):
CCCAAACCCTATTAAAACCAATTAA
Found at i:14870700 original size:27 final size:27
Alignment explanation
Indices: 14870670--14870746 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
14870660 CGTTAATAGT
*
14870670 TGACTTTGACCATTGACCATTGACCGC
1 TGACTTTGACCATTGACCCTTGACCGC
* * *
14870697 TGACTTTGACCGTTGACCCTTGACTGT
1 TGACTTTGACCATTGACCCTTGACCGC
* *
14870724 TAACTTTGACCTTTGACCCTTGA
1 TGACTTTGACCATTGACCCTTGA
14870747 ACGTTGACCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.35
Consensus pattern (27 bp):
TGACTTTGACCATTGACCCTTGACCGC
Found at i:14870712 original size:7 final size:7
Alignment explanation
Indices: 14870675--14870761 Score: 61
Period size: 7 Copynumber: 12.7 Consensus size: 7
14870665 ATAGTTGACT
*
14870675 TTGACCA
1 TTGACCG
*
14870682 TTGACCA
1 TTGACCG
14870689 TTGACCG
1 TTGACCG
* *
14870696 CTGA-CT
1 TTGACCG
14870702 TTGACCG
1 TTGACCG
*
14870709 TTGACCC
1 TTGACCG
*
14870716 TTGACTG
1 TTGACCG
* *
14870723 TT-AACT
1 TTGACCG
*
14870729 TTGACCT
1 TTGACCG
*
14870736 TTGACCC
1 TTGACCG
*
14870743 TTGAACG
1 TTGACCG
14870750 TTGACCG
1 TTGACCG
14870757 TTGAC
1 TTGAC
14870762 TTTTTCGAAA
Statistics
Matches: 62, Mismatches: 16, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
6 7 0.11
7 55 0.89
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (7 bp):
TTGACCG
Found at i:14870738 original size:34 final size:34
Alignment explanation
Indices: 14870700--14870764 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
14870690 TGACCGCTGA
* * *
14870700 CTTTGACCGTTGACCCTTGACTGTTAACTTTGAC
1 CTTTGACCCTTGAACCTTGACCGTTAACTTTGAC
* *
14870734 CTTTGACCCTTGAACGTTGACCGTTGACTTT
1 CTTTGACCCTTGAACCTTGACCGTTAACTTT
14870765 TTCGAAAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.38
Consensus pattern (34 bp):
CTTTGACCCTTGAACCTTGACCGTTAACTTTGAC
Found at i:14871851 original size:15 final size:16
Alignment explanation
Indices: 14871825--14871856 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
14871815 TGTTTTAATT
14871825 TATTATTTATTATTAC
1 TATTATTTATTATTAC
14871841 TATTA-TTATTATTAC
1 TATTATTTATTATTAC
14871856 T
1 T
14871857 TCGAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATTTATTATTAC
Found at i:14873244 original size:20 final size:20
Alignment explanation
Indices: 14873219--14873256 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14873209 TATTTTACGC
14873219 TTTTAATT-TTTAATAATATA
1 TTTTAATTATTT-ATAATATA
14873239 TTTTAATTATTTATAATA
1 TTTTAATTATTTATAATA
14873257 ATAATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAATTATTTATAATATA
Found at i:14874732 original size:5 final size:5
Alignment explanation
Indices: 14874716--14874750 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
14874706 TACTGATTAC
*
14874716 GAAAA GAGAA GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
14874751 TGGATGACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:14881746 original size:41 final size:41
Alignment explanation
Indices: 14881683--14881772 Score: 135
Period size: 41 Copynumber: 2.2 Consensus size: 41
14881673 CACTTGAGCT
* *
14881683 GGCACACGGGTATTTATTAGGGTGTGTGTATACTATTCTGG
1 GGCACACGGGTATATATCAGGGTGTGTGTATACTATTCTGG
* * *
14881724 GGCACACGGGTGTATGTCAGGGTGTGTGTATATTATTCTGG
1 GGCACACGGGTATATATCAGGGTGTGTGTATACTATTCTGG
14881765 GGCACACG
1 GGCACACG
14881773 AGCTGACACA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.34, T:0.32
Consensus pattern (41 bp):
GGCACACGGGTATATATCAGGGTGTGTGTATACTATTCTGG
Found at i:14881792 original size:43 final size:41
Alignment explanation
Indices: 14881701--14881793 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
14881691 GGTATTTATT
* **
14881701 AGGGTGTGTGTATACTATTCTGGGGCACACGGGTGTATGTC
1 AGGGTGTGTGTATACTATTCTGGGGCACACGGCTGTATCAC
*
14881742 AGGGTGTGTGTATATTATTCTGGGGCACACGAGCTG-A-CAC
1 AGGGTGTGTGTATACTATTCTGGGGCACACG-GCTGTATCAC
*
14881782 ATGGATGTGTGT
1 A-GGGTGTGTGT
14881794 TAGTATGTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
40 2 0.04
41 40 0.89
42 3 0.07
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.31
Consensus pattern (41 bp):
AGGGTGTGTGTATACTATTCTGGGGCACACGGCTGTATCAC
Found at i:14881834 original size:52 final size:52
Alignment explanation
Indices: 14881738--14881866 Score: 143
Period size: 52 Copynumber: 2.5 Consensus size: 52
14881728 CACGGGTGTA
* * * * *
14881738 TGTCAGGGTGTGTGTATATTATTCTGGGGCACACGAGCTGACACATGGATGTG
1 TGTCAGGATGTGTGTATATTGTT-TGGGGCACAAGAGCTAACACATGGACGTG
* * *
14881791 TGTTAGTATGTGTGTATATTGTTTGGGGCACATAG-GCTAACACATGGGCGTG
1 TGTCAGGATGTGTGTATATTGTTTGGGGCACA-AGAGCTAACACATGGACGTG
* *
14881843 TGTCAGGGTATGTGTATATTGTTT
1 TGTCAGGATGTGTGTATATTGTTT
14881867 TGAGACACAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
52 43 0.68
53 20 0.32
ACGTcount: A:0.20, C:0.12, G:0.33, T:0.36
Consensus pattern (52 bp):
TGTCAGGATGTGTGTATATTGTTTGGGGCACAAGAGCTAACACATGGACGTG
Found at i:14882256 original size:18 final size:18
Alignment explanation
Indices: 14882230--14882274 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
14882220 GTTGGGACTG
*
14882230 TGAAGTGAAAGAAGTAAC
1 TGAATTGAAAGAAGTAAC
14882248 TGAATTGAAAGAAGTAAC
1 TGAATTGAAAGAAGTAAC
14882266 TGAATTGAA
1 TGAATTGAA
14882275 CTAATTCAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.22
Consensus pattern (18 bp):
TGAATTGAAAGAAGTAAC
Found at i:14882467 original size:29 final size:29
Alignment explanation
Indices: 14882425--14882480 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
14882415 ACAGATGAGG
* *
14882425 GTATCATGTCTGCATTTGTAACTGTATTC
1 GTATCATGTCTGCATCTGCAACTGTATTC
*
14882454 GTATCATGTTTGCATCTGCAACTGTAT
1 GTATCATGTCTGCATCTGCAACTGTAT
14882481 CTGTGACATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (29 bp):
GTATCATGTCTGCATCTGCAACTGTATTC
Found at i:14882825 original size:55 final size:55
Alignment explanation
Indices: 14882763--14882969 Score: 180
Period size: 55 Copynumber: 3.9 Consensus size: 55
14882753 TTGTAGGAGA
*
14882763 CACACAGGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACTGGCTAG
1 CACACAGGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACAGGCTAG
* * * * *
14882818 TACACAGGCGTGTGTCA--A-G-GTGTGTATACTATTTGGAGGCAGACAGGCTGG
1 CACACAGGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACAGGCTAG
* ** * * *
14882869 CAAATGGGCGTGTGTTAGGGTGTGTGTGCATACTGTTTGGAAGCACAC-GAGCTAG
1 CACACAGGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACAG-GCTAG
* * * *
14882924 CACAC-GGACATGTGTCAAGG-TGTGTGT--ATATTGTTTGGAGGCACAC
1 CACACAGG-CGTGTGT-TAGGATGTGTGTGCATACTATTTGGAGGCACAC
14882970 GGGTGTGTGT
Statistics
Matches: 122, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
51 40 0.33
52 1 0.01
53 18 0.15
54 4 0.03
55 56 0.46
56 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (55 bp):
CACACAGGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACAGGCTAG
Found at i:14882856 original size:51 final size:50
Alignment explanation
Indices: 14882784--14882971 Score: 162
Period size: 51 Copynumber: 3.6 Consensus size: 50
14882774 GTGTTAGGAT
* *
14882784 GTGTGTGCATACTATTTGGAGGCACACTGGCTAGTACACAGGCGTGTGTCAA
1 GTGTGTGTATACTATTTGGAGGCACAC-GGCTAGCACAC-GGCGTGTGTCAA
* * * * * *
14882836 G-GTGTGTATACTATTTGGAGGCAGACAGGCTGGCAAATGGGCGTGTGTTAGG
1 GTGTGTGTATACTATTTGGAGGCACAC-GGCTAGCACA-CGGCGTGTGTCA-A
* * *
14882888 GTGTGTGTGCATACTGTTTGGAAGCACACGAGCTAGCACACGGACATGTGTCAA
1 GTGTGTGT--ATACTATTTGGAGGCACACG-GCTAGCACACGG-CGTGTGTCAA
* *
14882942 GGTGTGTGTATATTGTTTGGAGGCACACGG
1 -GTGTGTGTATACTATTTGGAGGCACACGG
14882972 GTGTGTGTAT
Statistics
Matches: 108, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
51 40 0.37
52 3 0.03
53 24 0.22
54 3 0.03
55 38 0.35
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.27
Consensus pattern (50 bp):
GTGTGTGTATACTATTTGGAGGCACACGGCTAGCACACGGCGTGTGTCAA
Found at i:14882915 original size:106 final size:108
Alignment explanation
Indices: 14882769--14882966 Score: 287
Period size: 106 Copynumber: 1.9 Consensus size: 108
14882759 GAGACACACA
* * *
14882769 GGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAGGCACACTG-GCTAGTACACAGG-CGTGTG
1 GGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAAGCACAC-GAGCTAGCACAC-GGACATGTG
14882832 TCAA-G-GTGTGTATACTATTTGGAGGCAGACAGGCTGGCAAATG
64 TCAAGGTGTGTGTATACTATTTGGAGGCAGACAGGCTGGCAAATG
* *
14882875 GGCGTGTGTTAGGGTGTGTGTGCATACTGTTTGGAAGCACACGAGCTAGCACACGGACATGTGTC
1 GGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAAGCACACGAGCTAGCACACGGACATGTGTC
* *
14882940 AAGGTGTGTGTATATTGTTTGGAGGCA
66 AAGGTGTGTGTATACTATTTGGAGGCA
14882967 CACGGGTGTG
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
105 3 0.04
106 57 0.70
107 1 0.01
108 20 0.25
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (108 bp):
GGCGTGTGTTAGGATGTGTGTGCATACTATTTGGAAGCACACGAGCTAGCACACGGACATGTGTC
AAGGTGTGTGTATACTATTTGGAGGCAGACAGGCTGGCAAATG
Found at i:14883131 original size:94 final size:93
Alignment explanation
Indices: 14882970--14883148 Score: 211
Period size: 94 Copynumber: 1.9 Consensus size: 93
14882960 GGAGGCACAC
* * *
14882970 GGGTGTGTGTATATTGTTTGGAGGCACTTGAGCTGGCACACAGGCATTTATTAGGGTGTGTGTAT
1 GGGTGTGTGTATATTGTTTGGAGGCACATGAGCTGGCACACAGGCATGTATTAGGGTGAGTGTAT
*
14883035 ACTATTTTAGGGCACACGGGCGTATGTCA
66 ACT-GTTTAGGGCACACGGGCGTATGTCA
* * * *
14883064 GGGTGTGTGTATATTGTTCTGG-GGCACATGGGCT-G-ACACATGGACGTGTGTTAGTGTGAGTG
1 GGGTGTGTGTATATTGTT-TGGAGGCACATGAGCTGGCACACA-GG-CATGTATTAGGGTGAGTG
* *
14883126 TATACTGTTTGGGGCACATGGGC
63 TATACTGTTTAGGGCACACGGGC
14883149 TAACGCATGG
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
92 5 0.07
93 17 0.24
94 47 0.65
95 3 0.04
ACGTcount: A:0.18, C:0.13, G:0.36, T:0.32
Consensus pattern (93 bp):
GGGTGTGTGTATATTGTTTGGAGGCACATGAGCTGGCACACAGGCATGTATTAGGGTGAGTGTAT
ACTGTTTAGGGCACACGGGCGTATGTCA
Found at i:14883179 original size:52 final size:53
Alignment explanation
Indices: 14883061--14883181 Score: 142
Period size: 52 Copynumber: 2.3 Consensus size: 53
14883051 CGGGCGTATG
* * *
14883061 TCAGGGTGTGTGTATATTGTTCTGGGGCACATGGGCTGACACATGGACGTGTGT
1 TCAGGGTATGTGTATACTGTTCTGGGGCACATGGGCTAACACATGGA-GTGTGT
* *
14883115 T-AGTGTGA-GTGTATACTGTT-TGGGGCACATGGGCTAACGCATGG-GTGTGT
1 TCAGGGT-ATGTGTATACTGTTCTGGGGCACATGGGCTAACACATGGAGTGTGT
14883165 ATCAGGGTATGTGTATA
1 -TCAGGGTATGTGTATA
14883182 TTATTTTGAG
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
50 6 0.11
51 2 0.04
52 33 0.58
53 15 0.26
54 1 0.02
ACGTcount: A:0.19, C:0.12, G:0.36, T:0.32
Consensus pattern (53 bp):
TCAGGGTATGTGTATACTGTTCTGGGGCACATGGGCTAACACATGGAGTGTGT
Found at i:14885069 original size:315 final size:315
Alignment explanation
Indices: 14884497--14885130 Score: 1151
Period size: 315 Copynumber: 2.0 Consensus size: 315
14884487 TGTAGGAGTA
*
14884497 GGCAATTCTAGAGGCAAATATGTGGTGAATCCTATTAATAATTCCATGACGATTTTGGAGAGTTT
1 GGCAATTCTAGAGGCAAATATGTGGTGAATCCTATCAATAATTCCATGACGATTTTGGAGAGTTT
*
14884562 GGACGTGAGGTCCAAAGATAGGCTCAGTAAGCCTAAACTTGTGGAGCAAACCAAGTCTACTGAAC
66 GGACATGAGGTCCAAAGATAGGCTCAGTAAGCCTAAACTTGTGGAGCAAACCAAGTCTACTGAAC
14884627 TTTTTCATAATGATCCAAAAAATTTACAAAATATATGTATATTTATTTATAGGGTAAACCATATT
131 TTTTTCATAATGATCCAAAAAATTTACAAAATATATGTATATTTATTTATAGGGTAAACCATATT
*
14884692 GGTTTTCGCCCAATTATTAGTAAATTCTTCTTTGGTCACCCAACTATTCGACTTTTTTTCTTTTT
196 GGTTTTCGCCCAATTATTAGTAAATTCTTCTTTGGTCACCCAACTATTCAACTTTTTTTCTTTTT
*
14884757 CAATCATTAGTCGTTAAATTACTAATGAAAAGATAACTTAGTAGCTTTTGAAATT
261 CAATCATTAGTCGTTAAATTACTAATAAAAAGATAACTTAGTAGCTTTTGAAATT
* * *
14884812 GGCAATTCTAGAGGCCAATATGTGGTGAATCCTATCAATAATTCTATGATGATTTTGGAGAGTTT
1 GGCAATTCTAGAGGCAAATATGTGGTGAATCCTATCAATAATTCCATGACGATTTTGGAGAGTTT
* *
14884877 GGACATGAGGTCCAAAGATAGGCTCAGTAAGGCTAAACTTGTGGAGCAAACCAAGTCTATTGAAC
66 GGACATGAGGTCCAAAGATAGGCTCAGTAAGCCTAAACTTGTGGAGCAAACCAAGTCTACTGAAC
* *
14884942 TTTTTCATAATGATCCAGAAAATTTACAAAATGTATGTATATTTATTTATAGGGTAAACCATATT
131 TTTTTCATAATGATCCAAAAAATTTACAAAATATATGTATATTTATTTATAGGGTAAACCATATT
14885007 GGTTTTCGCCCAATTATTAGTAAATTCTTCTTTGGTCACCCAACTATTCAACTTTTTTTCTTTTT
196 GGTTTTCGCCCAATTATTAGTAAATTCTTCTTTGGTCACCCAACTATTCAACTTTTTTTCTTTTT
* *
14885072 TAATCATTGGTCGTTAAATTACTAATAAAAAGATAACTTAGTAGCTTTTGAAATT
261 CAATCATTAGTCGTTAAATTACTAATAAAAAGATAACTTAGTAGCTTTTGAAATT
14885127 GGCA
1 GGCA
14885131 TAATAGCATC
Statistics
Matches: 306, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
315 306 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (315 bp):
GGCAATTCTAGAGGCAAATATGTGGTGAATCCTATCAATAATTCCATGACGATTTTGGAGAGTTT
GGACATGAGGTCCAAAGATAGGCTCAGTAAGCCTAAACTTGTGGAGCAAACCAAGTCTACTGAAC
TTTTTCATAATGATCCAAAAAATTTACAAAATATATGTATATTTATTTATAGGGTAAACCATATT
GGTTTTCGCCCAATTATTAGTAAATTCTTCTTTGGTCACCCAACTATTCAACTTTTTTTCTTTTT
CAATCATTAGTCGTTAAATTACTAATAAAAAGATAACTTAGTAGCTTTTGAAATT
Found at i:14886126 original size:20 final size:21
Alignment explanation
Indices: 14886101--14886139 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
14886091 TATTAATATA
14886101 TATTTTTTAA-AATTTTTAAC
1 TATTTTTTAATAATTTTTAAC
14886121 TATTTTTTAATAATTTTTA
1 TATTTTTTAATAATTTTTA
14886140 TAATATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTTTTAATAATTTTTAAC
Found at i:14913622 original size:53 final size:53
Alignment explanation
Indices: 14913565--14913711 Score: 161
Period size: 55 Copynumber: 2.7 Consensus size: 53
14913555 AGTACATAGG
* * * * *
14913565 CGTGTGTCAGGGTATGTCTATACTGTTTGAAGGTACAC-AGGCTGGTAAACAGA
1 CGTGTGTCAGGGTGTGTATATACTGTTTGAAAGCACACGA-GCTGGCAAACAGA
* * * * *
14913618 CGTGTGTTAGGGTGTGTGTGCATACTATTTGAAAGCACACGAGCTGGCACACGGA
1 CGTGTGTCAGGGTGTGTAT--ATACTGTTTGAAAGCACACGAGCTGGCAAACAGA
*
14913673 CGTGTGTCAGGGTGTGTATATACTGTTTGGAAGCACACG
1 CGTGTGTCAGGGTGTGTATATACTGTTTGAAAGCACACG
14913712 GGTGTATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
53 34 0.44
55 43 0.55
56 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (53 bp):
CGTGTGTCAGGGTGTGTATATACTGTTTGAAAGCACACGAGCTGGCAAACAGA
Found at i:14913626 original size:108 final size:108
Alignment explanation
Indices: 14913505--14913701 Score: 281
Period size: 108 Copynumber: 1.8 Consensus size: 108
14913495 TAGAAGACAC
* * *
14913505 ACAGACGTGTGTTACGATGTGTGTGCATACTATTTGGAGGCACACTG-GCTAGTACATAGG-CGT
1 ACAGACGTGTGTTACGATGTGTGTGCATACTATTTGAAAGCACAC-GAGCTAGCACA-AGGACGT
*
14913568 GTGTCAGGGTATGTCTATACTGTTTGAAGGTACACAGGCTGGTAA
64 GTGTCAGGGTATGTATATACTGTTTGAAGGTACACAGGCTGGTAA
* * * *
14913613 ACAGACGTGTGTTAGGGTGTGTGTGCATACTATTTGAAAGCACACGAGCTGGCACACGGACGTGT
1 ACAGACGTGTGTTACGATGTGTGTGCATACTATTTGAAAGCACACGAGCTAGCACAAGGACGTGT
*
14913678 GTCAGGGTGTGTATATACTGTTTG
66 GTCAGGGTATGTATATACTGTTTG
14913702 GAAGCACACG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 75 0.96
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.29
Consensus pattern (108 bp):
ACAGACGTGTGTTACGATGTGTGTGCATACTATTTGAAAGCACACGAGCTAGCACAAGGACGTGT
GTCAGGGTATGTATATACTGTTTGAAGGTACACAGGCTGGTAA
Found at i:14913664 original size:55 final size:53
Alignment explanation
Indices: 14913503--14913711 Score: 170
Period size: 53 Copynumber: 3.9 Consensus size: 53
14913493 TGTAGAAGAC
* * * * * *
14913503 ACACAGACGTGTGTTACGATGTGTGTGCATACTATTTGGAGGCACACTG-GCTAGT
1 ACACAGACGTGTGTCA-G-GGTGTGTGTATACTATTTGAAAGCACAC-GAGCTGGT
* * * * * * *
14913558 ACATAGGCGTGTGTCAGGGTATGTCTATACTGTTTGAAGGTACAC-AGGCTGGT
1 ACACAGACGTGTGTCAGGGTGTGTGTATACTATTTGAAAGCACACGA-GCTGGT
* * *
14913611 AAACAGACGTGTGTTAGGGTGTGTGTGCATACTATTTGAAAGCACACGAGCTGGC
1 ACACAGACGTGTGTCAGGGTGTGTGT--ATACTATTTGAAAGCACACGAGCTGGT
* * * *
14913666 ACACGGACGTGTGTCAGGGTGTGTATATACTGTTTGGAAGCACACG
1 ACACAGACGTGTGTCAGGGTGTGTGTATACTATTTGAAAGCACACG
14913712 GGTGTATATA
Statistics
Matches: 122, Mismatches: 27, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
53 64 0.52
54 1 0.01
55 56 0.46
56 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (53 bp):
ACACAGACGTGTGTCAGGGTGTGTGTATACTATTTGAAAGCACACGAGCTGGT
Found at i:14913852 original size:43 final size:41
Alignment explanation
Indices: 14913760--14913852 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 41
14913750 AGGCATTTAT
* ***
14913760 CAGGGTGTGTGTATACTGTTCTGGGGCACACGGGCGTATGT
1 CAGGGTGTGTGTATACTGTTCTGGGGCACACAGGCGTAACA
*
14913801 CAGGGTGTGTGTATATTGTTCTGGGGCACACAGGC-TAACA
1 CAGGGTGTGTGTATACTGTTCTGGGGCACACAGGCGTAACA
*
14913841 CATGGGCGTGTG
1 CA-GGGTGTGTG
14913853 GCAAGGTGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 4 0.09
41 41 0.91
ACGTcount: A:0.17, C:0.17, G:0.38, T:0.28
Consensus pattern (41 bp):
CAGGGTGTGTGTATACTGTTCTGGGGCACACAGGCGTAACA
Found at i:14913893 original size:52 final size:52
Alignment explanation
Indices: 14913786--14913926 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 52
14913776 TGTTCTGGGG
* * *
14913786 CACACGGGCGTATGTCAGGGTGTGTGTATATTGTTCTGGGGCACACAGGCTAA
1 CACATGGGCGTGTGTCAGGGTGTGTGTATATTGGT-TGGGGCACACAGGCTAA
* * * **
14913839 CACATGGGCGTGTGGCAAGGTGTGTGTATACTGGTTGGGGCACATGGGCTAA
1 CACATGGGCGTGTGTCAGGGTGTGTGTATATTGGTTGGGGCACACAGGCTAA
14913891 CACATGGGCGTGTGTCAGGGTGTGTGTATATTGGTT
1 CACATGGGCGTGTGTCAGGGTGTGTGTATATTGGTT
14913927 TGAGACACAT
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 48 0.62
53 29 0.38
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.28
Consensus pattern (52 bp):
CACATGGGCGTGTGTCAGGGTGTGTGTATATTGGTTGGGGCACACAGGCTAA
Found at i:14914545 original size:29 final size:29
Alignment explanation
Indices: 14914480--14914535 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
14914470 ATGGATGAGG
* *
14914480 GTATCATGTCTGCATTTGTAACTGTATTC
1 GTATCATGTCTGCATCTGCAACTGTATTC
14914509 GTATCATGTCTGCATCTGCAACTGTAT
1 GTATCATGTCTGCATCTGCAACTGTAT
14914536 CTGTGACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41
Consensus pattern (29 bp):
GTATCATGTCTGCATCTGCAACTGTATTC
Done.