Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 65 of 193
Found at i:21008454 original size:58 final size:57
Alignment explanation
Indices: 21008387--21008503 Score: 189
Period size: 58 Copynumber: 2.0 Consensus size: 57
21008377 TTCATTAAGT
* * *
21008387 TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAAGTGTTTTGTTGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATAATTAACTGTTTTGTT-TG
*
21008445 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATAATTAACTGTTTTGTTTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATAATTAACTGTTTTGTTTG
21008502 TT
1 TT
21008504 AAATGCATCT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
57 4 0.07
58 51 0.93
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.56
Consensus pattern (57 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATAATTAACTGTTTTGTTTG
Found at i:21009063 original size:80 final size:79
Alignment explanation
Indices: 21008959--21009122 Score: 267
Period size: 80 Copynumber: 2.1 Consensus size: 79
21008949 TCATTAAGGA
* * *
21008959 GAAA-TGCCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGCTTTCCT
1 GAAATTGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
*
21009023 ACAAGTGTTAAAAAT
66 ACAAGAGTT-AAAAT
*
21009038 GAAATTGCCATTCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
1 GAAATTGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
21009103 ACAAGAGTTAAAAT
66 ACAAGAGTTAAAAT
21009117 GAAATT
1 GAAATT
21009123 AGTGCTTGTA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 15 0.19
80 64 0.81
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (79 bp):
GAAATTGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
ACAAGAGTTAAAAT
Found at i:21010131 original size:15 final size:16
Alignment explanation
Indices: 21010111--21010145 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
21010101 ATCGAATGGA
21010111 GGAAAGGACTCG-AAG
1 GGAAAGGACTCGTAAG
*
21010126 GGAAAGGCCTCGTAAG
1 GGAAAGGACTCGTAAG
21010142 GGAA
1 GGAA
21010146 GATCACTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.37, C:0.14, G:0.40, T:0.09
Consensus pattern (16 bp):
GGAAAGGACTCGTAAG
Found at i:21014931 original size:48 final size:47
Alignment explanation
Indices: 21014850--21014981 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 47
21014840 TATTTATGCT
21014850 TCATTAAGTGTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTACA
1 TCATTAAGTG--TTTTTTTGTTAAATGCATCTTTGTTTAATAATCTACA
** * *
21014899 TCATTAAGTGTTTTCTTTGTTAAATGGGTCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTT-TTTGTTAAATGCATCTTTGTTTAATAATCTACA
* * * *
21014947 TTATTAACTGTTTTGTTGTTAAATGCAACTTTGTT
1 TCATTAAGTGTTTTTTTGTTAAATGCATCTTTGTT
21014982 AAATGCCTTG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
47 21 0.29
48 41 0.57
49 10 0.14
ACGTcount: A:0.23, C:0.10, G:0.14, T:0.52
Consensus pattern (47 bp):
TCATTAAGTGTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTACA
Found at i:21015527 original size:80 final size:79
Alignment explanation
Indices: 21015423--21015579 Score: 251
Period size: 80 Copynumber: 2.0 Consensus size: 79
21015413 TCATTAAGGA
* * * * *
21015423 GAAATGCCATGCCTTTTCAGCTACATCGGATCCTAATGAAGAGACATGACTCATTGGCTTTCCTA
1 GAAATGCCATGCCGTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
*
21015488 CAATAGTTAAAAAC
66 CAAGAGTTAAAAAC
21015502 GAAATTGCCATGCCGTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
1 GAAA-TGCCATGCCGTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
21015567 ACAAGAGTTAAAA
65 ACAAGAGTTAAAA
21015580 CAAAATTAGT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 4 0.06
80 67 0.94
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (79 bp):
GAAATGCCATGCCGTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
CAAGAGTTAAAAAC
Found at i:21026875 original size:20 final size:21
Alignment explanation
Indices: 21026845--21026887 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
21026835 GGACCCTTAA
*
21026845 ACTTGAAAAATGTCCCAAAAC
1 ACTTGAAAAATATCCCAAAAC
*
21026866 ACTT-AAAAATATCCCCAAAC
1 ACTTGAAAAATATCCCAAAAC
21026886 AC
1 AC
21026888 CATTTGGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.49, C:0.28, G:0.05, T:0.19
Consensus pattern (21 bp):
ACTTGAAAAATATCCCAAAAC
Found at i:21028363 original size:16 final size:17
Alignment explanation
Indices: 21028334--21028366 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
21028324 ATTTTGTTTA
21028334 TTATTTTAATTTAATTC
1 TTATTTTAATTTAATTC
21028351 TTATTTT-ATTTAATTC
1 TTATTTTAATTTAATTC
21028367 AAACCCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTTTAATTTAATTC
Found at i:21028775 original size:23 final size:23
Alignment explanation
Indices: 21028739--21028798 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 23
21028729 TTTGTTTGTG
* *
21028739 TTATTTGTTGTATTTAATTGTAT
1 TTATTTATTGTATTTAATTCTAT
* *
21028762 TTATTTATTTTATTTTATTCTAT
1 TTATTTATTGTATTTAATTCTAT
* *
21028785 TCATGTA-TGTATTT
1 TTATTTATTGTATTT
21028799 TTTTTATATT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.67
Consensus pattern (23 bp):
TTATTTATTGTATTTAATTCTAT
Found at i:21034465 original size:5 final size:5
Alignment explanation
Indices: 21034455--21034497 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
21034445 AAATTTCACA
*
21034455 AAAAG AAAAG AAAA- AAAA- AAAAGG AAAAG AAAAA AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAA-G AAAAG AAAAG AAAAG AAAA
21034498 AGGAGAGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 8 0.24
5 22 0.65
6 4 0.12
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:21034477 original size:18 final size:19
Alignment explanation
Indices: 21034454--21034492 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
21034444 GAAATTTCAC
21034454 AAAAA-GAAAAGAAAAAAA
1 AAAAAGGAAAAGAAAAAAA
21034472 AAAAAGGAAAAGAAAAAAA
1 AAAAAGGAAAAGAAAAAAA
21034491 AA
1 AA
21034493 GAAAAAGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAGGAAAAGAAAAAAA
Found at i:21034487 original size:16 final size:16
Alignment explanation
Indices: 21034454--21034499 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
21034444 GAAATTTCAC
*
21034454 AAAAAGAAAAGAAAAAAA
1 AAAAAG-AAA-AAGAAAA
*
21034472 AAAAAGGAAAAGAAAA
1 AAAAAGAAAAAGAAAA
21034488 AAAAAGAAAAAG
1 AAAAAGAAAAAG
21034500 GAGAGTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 17 0.68
17 2 0.08
18 6 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAA
Found at i:21037097 original size:62 final size:60
Alignment explanation
Indices: 21036918--21037114 Score: 297
Period size: 60 Copynumber: 3.2 Consensus size: 60
21036908 GGTTTAATGT
*
21036918 TGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTATATGGTCCGATGACTA
1 TGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTATAAGGTCCGATGACTA
* * *
21036978 TGTTTCATCGTGAGAATTAAATGAAATGAATCCTTTATGGATTATAAGGTCCGATGACTA
1 TGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTATAAGGTCCGATGACTA
* *
21037038 TGTGTCATCGTGAGTATTAAATGAGAAATGAATCCTATTACGGATTA-AAGGTCTGATGACTC
1 TGTGTCATCGTGAGTATTAAAT--GAAATGAATCCT-TTACGGATTATAAGGTCCGATGACTA
*
21037100 TGTGTCATCATGAGT
1 TGTGTCATCGTGAGT
21037115 TACCAAATGC
Statistics
Matches: 124, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
60 76 0.61
62 39 0.31
63 9 0.07
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.35
Consensus pattern (60 bp):
TGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTATAAGGTCCGATGACTA
Found at i:21037145 original size:63 final size:63
Alignment explanation
Indices: 21036953--21037138 Score: 164
Period size: 60 Copynumber: 3.0 Consensus size: 63
21036943 ATGAATCCTT
* * * * ** * **
21036953 TACGGATTATATGGTCCGATGACTATGTTTCATCGTGAGAATTAAAT--GAAATGAATCC-TT
1 TACGGATTATAAGGTCCGATGACTATGTGTCATCATGAGTACCAAATGAGAAATGAAACCAAC
* * ** * * *
21037013 TATGGATTATAAGGTCCGATGACTATGTGTCATCGTGAGTATTAAATGAGAAATGAATCCTAT
1 TACGGATTATAAGGTCCGATGACTATGTGTCATCATGAGTACCAAATGAGAAATGAAACCAAC
* * *
21037076 TACGGATTA-AAGGTCTGATGACTCTGTGTCATCATGAGTTACCAAATGCGAAATGAAACCAAC
1 TACGGATTATAAGGTCCGATGACTATGTGTCATCATGAG-TACCAAATGAGAAATGAAACCAAC
21037139 CTCGGATGTA
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
60 43 0.40
62 37 0.35
63 27 0.25
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (63 bp):
TACGGATTATAAGGTCCGATGACTATGTGTCATCATGAGTACCAAATGAGAAATGAAACCAAC
Found at i:21039439 original size:74 final size:74
Alignment explanation
Indices: 21039344--21039550 Score: 351
Period size: 74 Copynumber: 2.8 Consensus size: 74
21039334 AAAAGTGCAT
* *
21039344 ATCATTTTCTGAGAAACTGTCCAATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAATATGTG
1 ATCATTTTCTGAGAAACTGTCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAATATGCG
21039409 GAAGTACAG
66 GAAGTACAG
* *
21039418 ATCATTTTTTAAGAAACTGTCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAATATGCG
1 ATCATTTTCTGAGAAACTGTCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAATATGCG
*
21039483 GAAGTGCAG
66 GAAGTACAG
* *
21039492 ATCATTTTCTGAGAAATTATCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAA
1 ATCATTTTCTGAGAAACTGTCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAA
21039551 CCTCCTGCTA
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 124 1.00
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.25
Consensus pattern (74 bp):
ATCATTTTCTGAGAAACTGTCCGATGAAATCTGAAGCAAAAGAGGATCAGAGTGTAAAATATGCG
GAAGTACAG
Found at i:21043824 original size:60 final size:60
Alignment explanation
Indices: 21043694--21043903 Score: 257
Period size: 60 Copynumber: 3.5 Consensus size: 60
21043684 GAAAATGCAA
* * * *
21043694 AAGGTTCAATGA-T-TGTGTCATCGTGAGTATTAAATGAAATGAATCCTGTATGGATTTT
1 AAGGTCCAATGACTATGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTAT
* * *
21043752 ATGGT-CAGATGACTATGTTTCATCGTGAGTATTAAATGAAATGAATCCTTTACGAATTAT
1 AAGGTCCA-ATGACTATGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTAT
21043812 AAGGTCCAATGACTATGTGTCATCGTGAGTATTAAATGAGAAATGAATCCTATTACGGATTA-
1 AAGGTCCAATGACTATGTGTCATCGTGAGTATTAAAT--GAAATGAATCCT-TTACGGATTAT
** * *
21043874 AAGGTCTGATGACTCTGTGTCTTCGTGAGT
1 AAGGTCCAATGACTATGTGTCATCGTGAGT
21043904 TACCAAATGC
Statistics
Matches: 132, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
57 2 0.02
58 8 0.06
59 1 0.01
60 72 0.55
61 2 0.02
62 38 0.29
63 9 0.07
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (60 bp):
AAGGTCCAATGACTATGTGTCATCGTGAGTATTAAATGAAATGAATCCTTTACGGATTAT
Found at i:21045762 original size:25 final size:25
Alignment explanation
Indices: 21045734--21045923 Score: 123
Period size: 25 Copynumber: 7.6 Consensus size: 25
21045724 CAGAGTTTAG
*
21045734 CTCTTACGAGCAAGTCAGAACATCA
1 CTCTTACGAGCCAGTCAGAACATCA
* *
21045759 CTCTTACGAGCCAGAT-AGAAGATCG
1 CTCTTACGAGCCAG-TCAGAACATCA
* * *
21045784 CTCTTATGAGCCAGACAGAATATCA
1 CTCTTACGAGCCAGTCAGAACATCA
** * *
21045809 CTCTTACGAGCCAAACAGAATATCG
1 CTCTTACGAGCCAGTCAGAACATCA
* ** * *
21045834 CTCTTA-GATCCAAACAGAATATCG
1 CTCTTACGAGCCAGTCAGAACATCA
* ** * **
21045858 CTCTTATGAGCCAAACAGAATATTG
1 CTCTTACGAGCCAGTCAGAACATCA
* * * **
21045883 CTCTTATGAGCCAGACAGAATATTG
1 CTCTTACGAGCCAGTCAGAACATCA
21045908 CTCTTACGAGCCAGTC
1 CTCTTACGAGCCAGTC
21045924 TTTAGTAAAT
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
24 23 0.16
25 122 0.84
26 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (25 bp):
CTCTTACGAGCCAGTCAGAACATCA
Found at i:21045787 original size:50 final size:50
Alignment explanation
Indices: 21045733--21045920 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 50
21045723 ACAGAGTTTA
* * * * * *
21045733 GCTCTTACGAGCAAGTCAGAACATCACTCTTACGAGCCAGATAGAAGATC
1 GCTCTTATGAGCAAGACAGAATATCACTCTTACGAGCCAAACAGAATATC
*
21045783 GCTCTTATGAGCCAGACAGAATATCACTCTTACGAGCCAAACAGAATATC
1 GCTCTTATGAGCAAGACAGAATATCACTCTTACGAGCCAAACAGAATATC
* * * *
21045833 GCTCTTA-GATCCAA-ACAGAATATCGCTCTTATGAGCCAAACAGAATATT
1 GCTCTTATGA-GCAAGACAGAATATCACTCTTACGAGCCAAACAGAATATC
* **
21045882 GCTCTTATGAGCCAGACAGAATATTGCTCTTACGAGCCA
1 GCTCTTATGAGCAAGACAGAATATCACTCTTACGAGCCA
21045921 GTCTTTAGTA
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
49 43 0.36
50 76 0.64
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (50 bp):
GCTCTTATGAGCAAGACAGAATATCACTCTTACGAGCCAAACAGAATATC
Found at i:21045877 original size:74 final size:75
Alignment explanation
Indices: 21045734--21045920 Score: 234
Period size: 74 Copynumber: 2.5 Consensus size: 75
21045724 CAGAGTTTAG
* * * * * *
21045734 CTCTTACGAG-CAAGTCAGAACATCACTCTTACGAGCCAGATAGAAGATCGCTCTTATGAGCCAG
1 CTCTTACGAGCCAA-ACAGAATATCGCTCTTACGAGCCAAACAGAAGATCGCTCTTATGAGCCAA
21045798 ACAGAATATCA
65 ACAGAATATCA
* *
21045809 CTCTTACGAGCCAAACAGAATATCGCTCTTA-GATCCAAACAGAATATCGCTCTTATGAGCCAAA
1 CTCTTACGAGCCAAACAGAATATCGCTCTTACGAGCCAAACAGAAGATCGCTCTTATGAGCCAAA
**
21045873 CAGAATATTG
66 CAGAATATCA
* * *
21045883 CTCTTATGAGCCAGACAGAATATTGCTCTTACGAGCCA
1 CTCTTACGAGCCAAACAGAATATCGCTCTTACGAGCCA
21045921 GTCTTTAGTA
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
74 64 0.67
75 29 0.30
76 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (75 bp):
CTCTTACGAGCCAAACAGAATATCGCTCTTACGAGCCAAACAGAAGATCGCTCTTATGAGCCAAA
CAGAATATCA
Found at i:21047434 original size:14 final size:15
Alignment explanation
Indices: 21047415--21047447 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
21047405 ACTAACTTCT
*
21047415 AATTCACTAATT-AA
1 AATTCACCAATTCAA
21047429 AATTCACCAATTCAA
1 AATTCACCAATTCAA
21047444 AATT
1 AATT
21047448 TTCATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTCACCAATTCAA
Found at i:21048102 original size:50 final size:50
Alignment explanation
Indices: 21048038--21048135 Score: 133
Period size: 50 Copynumber: 2.0 Consensus size: 50
21048028 CTCAATCTCC
** *
21048038 CTGAAGTTGTAGTGGGATGAACCGAAGCCACAATCCAAAATCTTATATTT
1 CTGAAGTTACAGTGGAATGAACCGAAGCCACAATCCAAAATCTTATATTT
* ** *
21048088 CTGAAGTTACAGTGGAATGGAGTGAAGCCACAATCCCAAATCTTATAT
1 CTGAAGTTACAGTGGAATGAACCGAAGCCACAATCCAAAATCTTATAT
21048136 CCTTAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (50 bp):
CTGAAGTTACAGTGGAATGAACCGAAGCCACAATCCAAAATCTTATATTT
Found at i:21048148 original size:50 final size:50
Alignment explanation
Indices: 21048061--21048239 Score: 137
Period size: 50 Copynumber: 3.5 Consensus size: 50
21048051 GGGATGAACC
* * *
21048061 GAAGCCACAATCCAAAATCTTATAT-TTCTGAAGTTACAGTGGAATGGAGT
1 GAAGCCACAATCCCAAATCTTATATCCT-TAAAGTTACAGTGGAATGGAGT
* * * *
21048111 GAAGCCACAATCCCAAATCTTATATCCTTAAAATTACAGAGG-ATCAGATT
1 GAAGCCACAATCCCAAATCTTATATCCTTAAAGTTACAGTGGAAT-GGAGT
* * * ** * * *
21048161 AAAACTAACAATAGCAAATCTCAATCTCCTTAAAGTTGCAGTGGAATGGAGT
1 GAAGC-CACAATCCCAAATCT-TATATCCTTAAAGTTACAGTGGAATGGAGT
* * * *
21048213 GAAGCCATAACCCCAAGTCCTATATCC
1 GAAGCCACAATCCCAAATCTTATATCC
21048240 CTGAAGTTGT
Statistics
Matches: 94, Mismatches: 30, Indels: 10
0.70 0.22 0.07
Matches are distributed among these distances:
49 2 0.02
50 46 0.49
51 21 0.22
52 23 0.24
53 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (50 bp):
GAAGCCACAATCCCAAATCTTATATCCTTAAAGTTACAGTGGAATGGAGT
Found at i:21048267 original size:102 final size:102
Alignment explanation
Indices: 21048091--21048303 Score: 273
Period size: 102 Copynumber: 2.1 Consensus size: 102
21048081 TATATTTCTG
* * * * *
21048091 AAGTTACAGTGGAATGGAGTGAAGCCACAATCCCAAATCTTATATCCTTAAAATTACAGAGGATC
1 AAGTTGCAGTGGAATGGAGTGAAGCCACAACCCCAAATCCTATATCCCTAAAATTACAGAGAATC
21048156 AGATTAAAACTAACAATAGCAAATCTCAATCTCCTTA
66 AGATTAAAACTAACAATAGCAAATCTCAATCTCCTTA
* * * * ** *
21048193 AAGTTGCAGTGGAATGGAGTGAAGCCATAACCCCAAGTCCTATATCCCTGAAGTTGTAGTGAATC
1 AAGTTGCAGTGGAATGGAGTGAAGCCACAACCCCAAATCCTATATCCCTAAAATTACAGAGAATC
* * * * *
21048258 GGATTAAAACTCACAGTAGCATATCTCAATCTCCTTG
66 AGATTAAAACTAACAATAGCAAATCTCAATCTCCTTA
21048295 AAGTTGCAG
1 AAGTTGCAG
21048304 GGATCGAATT
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (102 bp):
AAGTTGCAGTGGAATGGAGTGAAGCCACAACCCCAAATCCTATATCCCTAAAATTACAGAGAATC
AGATTAAAACTAACAATAGCAAATCTCAATCTCCTTA
Found at i:21050218 original size:13 final size:13
Alignment explanation
Indices: 21050200--21050246 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
21050190 CCTTTTATTT
21050200 TTTATTATTTATA
1 TTTATTATTTATA
21050213 TTTATTCATTTAT-
1 TTTATT-ATTTATA
*
21050226 TTTAGTATTTA-A
1 TTTATTATTTATA
21050238 TTTA-TATTT
1 TTTATTATTT
21050247 GATCATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
11 5 0.16
12 9 0.29
13 11 0.35
14 6 0.19
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (13 bp):
TTTATTATTTATA
Found at i:21050244 original size:31 final size:32
Alignment explanation
Indices: 21050206--21050289 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
21050196 ATTTTTTATT
*
21050206 ATTTATATTTATTCATTTATTTTAGTA-TTTA
1 ATTTATATTTATTCATTTATTTTAATATTTTA
*
21050237 ATTTATATTTGA-TCATTT-TTTTAATATTTTG
1 ATTTATATTT-ATTCATTTATTTTAATATTTTA
* * *
21050268 TTTTGTTTTTATTCATTTATTT
1 ATTTATATTTATTCATTTATTT
21050290 GTTATTTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
30 8 0.18
31 32 0.73
32 4 0.09
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.68
Consensus pattern (32 bp):
ATTTATATTTATTCATTTATTTTAATATTTTA
Found at i:21053061 original size:17 final size:17
Alignment explanation
Indices: 21053022--21053064 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
21053012 ATTACTTAAA
* *
21053022 TTAAGAAATTAATTTAG
1 TTAATAAATTAATTGAG
21053039 TTAATAAATTAATTGA-
1 TTAATAAATTAATTGAG
21053055 TTCAATAAAT
1 TT-AATAAAT
21053065 AATATTTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (17 bp):
TTAATAAATTAATTGAG
Found at i:21055815 original size:12 final size:12
Alignment explanation
Indices: 21055800--21055825 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21055790 TTTTCATCTT
21055800 TTCTTTCTTTTA
1 TTCTTTCTTTTA
21055812 TTCTTTCTTTTA
1 TTCTTTCTTTTA
21055824 TT
1 TT
21055826 ACCATAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (12 bp):
TTCTTTCTTTTA
Found at i:21057746 original size:29 final size:29
Alignment explanation
Indices: 21057710--21058007 Score: 190
Period size: 29 Copynumber: 10.1 Consensus size: 29
21057700 AAAATGTAAA
21057710 TTTGGAAAGTTTGGGGTCAAAATATAATT
1 TTTGGAAAGTTTGGGGTCAAAATATAATT
* * ** * * *
21057739 TTTAGAAAATTTAAGGTTAAAATGTGATT
1 TTTGGAAAGTTTGGGGTCAAAATATAATT
* *
21057768 TTTAGAAAGTTTGGGGTC-AAATCA-AAGT
1 TTTGGAAAGTTTGGGGTCAAAAT-ATAATT
*
21057796 TTTGGAAAAGTTCGAGGGTCAAAATATAATT
1 TTTGG-AAAGTTTG-GGGTCAAAATATAATT
* * *
21057827 TTTGGAAAATTCAGAGGTCAAAATATAATT
1 TTTGGAAAGTT-TGGGGTCAAAATATAATT
* * * * **
21057857 TTTGAAAAGTTCGAGATCAAAATATAAAC
1 TTTGGAAAGTTTGGGGTCAAAATATAATT
* *
21057886 TTTGGAAAATTTAAGGGTCAAAA-AGTAATT
1 TTTGGAAAGTTT-GGGGTCAAAATA-TAATT
* * * *
21057916 TTTAGAGAGTTTGGGGTTAAAATGA-GATT
1 TTTGGAAAGTTTGGGGTCAAAAT-ATAATT
** * ** *
21057945 TTTGGAAAGTTCAAGGGTTAAAATCGAAGT
1 TTTGGAAAGTT-TGGGGTCAAAATATAATT
* *
21057975 TTTGGAAAATTCGGGGATCAAAATATAATT
1 TTTGGAAAGTTTGGGG-TCAAAATATAATT
21058005 TTT
1 TTT
21058008 AAATAAAACA
Statistics
Matches: 202, Mismatches: 54, Indels: 25
0.72 0.19 0.09
Matches are distributed among these distances:
28 10 0.05
29 90 0.45
30 88 0.44
31 14 0.07
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.35
Consensus pattern (29 bp):
TTTGGAAAGTTTGGGGTCAAAATATAATT
Found at i:21057817 original size:30 final size:30
Alignment explanation
Indices: 21057795--21058006 Score: 147
Period size: 30 Copynumber: 7.1 Consensus size: 30
21057785 CAAATCAAAG
21057795 TTTTGGAAAAGTTCGAGGGTCAAAATATAA
1 TTTTGGAAAAGTTCGAGGGTCAAAATATAA
21057825 TTTTTGGAAAA-TTC-AGAGGTCAAAATATAA
1 -TTTTGGAAAAGTTCGAG-GGTCAAAATATAA
* *
21057855 TTTTTGAAAAGTTCGA-GATCAAAATATAAA
1 TTTTGGAAAAGTTCGAGGGTCAAAATAT-AA
* **
21057885 CTTTGGAAAA-TTTAAGGGTCAAAA-AGTAA
1 TTTTGGAAAAGTTCGAGGGTCAAAATA-TAA
* * * * * *
21057914 TTTT-TAGAGAGTTTG-GGGTTAAAATGAGAT
1 TTTTGGA-AAAGTTCGAGGGTCAAAAT-ATAA
* * **
21057944 TTTTGG-AAAGTTCAAGGGTTAAAATCGAA
1 TTTTGGAAAAGTTCGAGGGTCAAAATATAA
21057973 GTTTTGGAAAA-TTCG-GGGATCAAAATATAA
1 -TTTTGGAAAAGTTCGAGGG-TCAAAATATAA
21058003 TTTT
1 TTTT
21058007 TAAATAAAAC
Statistics
Matches: 142, Mismatches: 24, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
28 1 0.01
29 54 0.38
30 72 0.51
31 15 0.11
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (30 bp):
TTTTGGAAAAGTTCGAGGGTCAAAATATAA
Found at i:21057893 original size:59 final size:60
Alignment explanation
Indices: 21057795--21057918 Score: 164
Period size: 59 Copynumber: 2.1 Consensus size: 60
21057785 CAAATCAAAG
* * **
21057795 TTTTGGAAAAGTTCGAGGGTCAAAATATAATTTTTGGAAAATTC-AGAGGTCAAAATA-TAA
1 TTTTTGAAAAGTTCGAGGATCAAAATATAAACTTTGGAAAATTCAAG-GGTCAAAA-AGTAA
*
21057855 TTTTTGAAAAGTTCGA-GATCAAAATATAAACTTTGGAAAATTTAAGGGTCAAAAAGTAA
1 TTTTTGAAAAGTTCGAGGATCAAAATATAAACTTTGGAAAATTCAAGGGTCAAAAAGTAA
21057914 TTTTT
1 TTTTT
21057919 AGAGAGTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
58 1 0.02
59 39 0.68
60 17 0.30
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (60 bp):
TTTTTGAAAAGTTCGAGGATCAAAATATAAACTTTGGAAAATTCAAGGGTCAAAAAGTAA
Found at i:21058686 original size:12 final size:12
Alignment explanation
Indices: 21058665--21058704 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
21058655 AAAAACTAAG
*
21058665 TTTTATTTTTCT
1 TTTTACTTTTCT
21058677 TTTTACTTTTCT
1 TTTTACTTTTCT
21058689 TTTTACTTTTCT
1 TTTTACTTTTCT
21058701 TTTT
1 TTTT
21058705 TCTAATTCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTACTTTTCT
Found at i:21058736 original size:13 final size:12
Alignment explanation
Indices: 21058665--21058738 Score: 53
Period size: 12 Copynumber: 5.8 Consensus size: 12
21058655 AAAAACTAAG
21058665 TTTTATTTT-TCT
1 TTTTATTTTCT-T
21058677 TTTTACTTTTC-T
1 TTTTA-TTTTCTT
21058689 TTTTACTTTTCTT
1 TTTTA-TTTTCTT
* *
21058702 TTTTCTAATTCGTT
1 TTTTAT-TTTC-TT
21058716 TTTATATTTTCGTT
1 TTT-TATTTTC-TT
21058730 TTTTATTTT
1 TTTTATTTT
21058739 GTTGTTATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
12 18 0.35
13 18 0.35
14 14 0.27
15 2 0.04
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTATTTTCTT
Found at i:21058944 original size:17 final size:19
Alignment explanation
Indices: 21058907--21058952 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
21058897 ATATTTCAAA
21058907 ATAAAAATATAAACAATAT
1 ATAAAAATATAAACAATAT
*
21058926 ATAAAAATA-AAATAAATAT
1 ATAAAAATATAAA-CAATAT
21058945 ATTAAAAA
1 A-TAAAAA
21058953 CGATATACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 3 0.12
19 15 0.62
20 6 0.25
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAATATAAACAATAT
Found at i:21059801 original size:40 final size:40
Alignment explanation
Indices: 21059735--21060056 Score: 282
Period size: 40 Copynumber: 8.1 Consensus size: 40
21059725 CGATTGGATG
* * *
21059735 CTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGTGTTT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTTT
* ** * *
21059775 CTTTAATCTACCCTC-TGATTAGGGTAAGAGATT--TGATA
1 CTTCAATCTACCC-CATGATCGGGGTAAGAGATTGGTGTTT
* *
21059813 CTTCAATTTGCCCCATGATCGGGGTAAGAGATTGG-GTTAT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTT-T
** * *
21059853 CTTCAATCCGCCTCATGATCGGGGTAAGAGATTGG-GCTGT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTG-TTT
**
21059893 CTTCAATCTGTCCCATGATCGGGGTAAGAGATTGG-GTTGT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTT-T
* * *
21059933 CTTCGATCTGCCCCATGATCGGGGTAAGAGATTGAGT-TAT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTG-GTGTTT
* * * *
21059973 CTTTAATCTACCCCATGATTGGGGTAAAAGATTAGGT-TGT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATT-GGTGTTT
** ** *
21060013 CTTCAATCTGTCCCATGATCTAGGTAAGAGATTGGTGTGT
1 CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTTT
21060053 CTTC
1 CTTC
21060057 TCTTTGCTCT
Statistics
Matches: 232, Mismatches: 39, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.00
38 29 0.12
39 6 0.03
40 191 0.82
41 5 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (40 bp):
CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTTT
Found at i:21059921 original size:80 final size:80
Alignment explanation
Indices: 21059718--21060056 Score: 336
Period size: 80 Copynumber: 4.3 Consensus size: 80
21059708 CCCACAGGCA
* * * *
21059718 GGGTAAGCGATT-GGATG-CTTCAATCTGCCTCATGATCGAGGTAAGAGATTGGTGTT-TCTTTA
1 GGGTAAGAGATTGGGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGG-GTTGTCTTCA
**
21059780 ATCTAC-CCTC-TGATTA
65 ATC--CGCCTCATGATCG
* * * *
21059796 GGGTAAGAGATT-TGAT-ACTTCAATTTGCCCCATGATCGGGGTAAGAGATTGGGTTATCTTCAA
1 GGGTAAGAGATTGGGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGGTTGTCTTCAA
21059859 TCCGCCTCATGATCG
66 TCCGCCTCATGATCG
* * *
21059874 GGGTAAGAGATTGGGCTGTCTTCAATCTGTCCCATGATCGGGGTAAGAGATTGGGTTGTCTTCGA
1 GGGTAAGAGATTGGGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGGTTGTCTTCAA
* *
21059939 TCTGCCCCATGATCG
66 TCCGCCTCATGATCG
* * * * * * * *
21059954 GGGTAAGAGATTGAGTTATCTTTAATCTACCCCATGATTGGGGTAAAAGATTAGGTTGTCTTCAA
1 GGGTAAGAGATTGGGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGGTTGTCTTCAA
* *
21060019 TCTGTCC-CATGATCT
66 TCCG-CCTCATGATCG
*
21060034 AGGTAAGAGATTGGTG-TGTCTTC
1 GGGTAAGAGATTGG-GATGTCTTC
21060057 TCTTTGCTCT
Statistics
Matches: 221, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
76 1 0.00
77 7 0.03
78 70 0.32
79 2 0.01
80 138 0.62
81 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (80 bp):
GGGTAAGAGATTGGGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGGTTGTCTTCAA
TCCGCCTCATGATCG
Found at i:21059991 original size:120 final size:120
Alignment explanation
Indices: 21059821--21060056 Score: 357
Period size: 120 Copynumber: 2.0 Consensus size: 120
21059811 TACTTCAATT
* * * *
21059821 TGCCCCATGATCGGGGTAAGAGATTGGGTTATCTTCAATCCGCCTCATGATCGGGGTAAGAGATT
1 TGCCCCATGATCGGGGTAAGAGATTGAGTTATCTTCAATCCACCCCATGATCGGGGTAAAAGATT
* *
21059886 GGGCTGTCTTCAATCTGTCCCATGATCGGGGTAAGAGATTGG-GTTGTCTTCGATC
66 AGGCTGTCTTCAATCTGTCCCATGATCGAGGTAAGAGATTGGTG-TGTCTTCGATC
* * *
21059941 TGCCCCATGATCGGGGTAAGAGATTGAGTTATCTTTAATCTACCCCATGATTGGGGTAAAAGATT
1 TGCCCCATGATCGGGGTAAGAGATTGAGTTATCTTCAATCCACCCCATGATCGGGGTAAAAGATT
* *
21060006 AGGTTGTCTTCAATCTGTCCCATGATCTAGGTAAGAGATTGGTGTGTCTTC
66 AGGCTGTCTTCAATCTGTCCCATGATCGAGGTAAGAGATTGGTGTGTCTTC
21060057 TCTTTGCTCT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
120 103 0.99
121 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (120 bp):
TGCCCCATGATCGGGGTAAGAGATTGAGTTATCTTCAATCCACCCCATGATCGGGGTAAAAGATT
AGGCTGTCTTCAATCTGTCCCATGATCGAGGTAAGAGATTGGTGTGTCTTCGATC
Found at i:21060309 original size:99 final size:99
Alignment explanation
Indices: 21060161--21060760 Score: 720
Period size: 99 Copynumber: 6.1 Consensus size: 99
21060151 TAGACTTAAT
* * * * *
21060161 CTTCCCTATCACATATTCTAAGGTATCAGGTTCACCGTTGTGGCCTCAACCTTTCCTTTCATATC
1 CTTCCC-ATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATC
* * *
21060226 TTTATGGTACCAGATTCACCGTTGCAGCCTCAATC
65 TTCATGGTACCAGATTCGCCATTGCAGCCTCAATC
* * * *
21060261 CTTCCCAACAAATCTTCTAAGGTACCGGCTTCACCGTTGCGGCGTCAACCTTTCCCTTCATATCT
1 CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
** * *
21060326 TCATGGTACCAGATTTTCTATTCCAGCCTCAATC
66 TCATGGTACCAGATTCGCCATTGCAGCCTCAATC
* * * *
21060360 CTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCAGCCTTAACCTTTCCCTTCATATTT
1 CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
* * * *
21060425 TCATGGTATCGGATTCGCCATTACGGCCTCAATC
66 TCATGGTACCAGATTCGCCATTGCAGCCTCAATC
* ** * *
21060459 TTTCCCATCACATCTTCTAAGGTATTGGGATCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCT
1 CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
* * * *
21060524 TCATGGTACCAGCTTCGTCGTTGCGGCCTCAATC
66 TCATGGTACCAGATTCGCCATTGCAGCCTCAATC
* * * *
21060558 CTTCCCACCACATCTTCTAAGGTACCGGGTTCACCGTTGCAGCCACAACATTTCCCTTCATATCT
1 CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
*
21060623 TCATGGTACCGGATTCGCCATTGC-GACCTCAATC
66 TCATGGTACCAGATTCGCCATTGCAG-CCTCAATC
* * * * *
21060657 TTTCCTATCACATCTTCTAAGGTACCGGGTTCACTGTTACGGCCTCAACCTTTCCCTTCATATTT
1 CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
* * * * *
21060722 TCAAGGTATCAAATTCGTCGTTGC-GACCTCAAT-
66 TCATGGTACCAGATTCGCCATTGCAG-CCTCAATC
21060755 CTTCCC
1 CTTCCC
21060761 TTTCAAACCT
Statistics
Matches: 426, Mismatches: 73, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
98 5 0.01
99 415 0.97
100 6 0.01
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (99 bp):
CTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
TCATGGTACCAGATTCGCCATTGCAGCCTCAATC
Found at i:21060709 original size:297 final size:297
Alignment explanation
Indices: 21060158--21060761 Score: 834
Period size: 297 Copynumber: 2.0 Consensus size: 297
21060148 TTGTAGACTT
* * *
21060158 AATCTTCCCTATCACATATTCTAAGGTATCAGGTTCACCGTTGTGGCCTCAACCTTTCCTTTCAT
1 AATCTTCCCTATCACATATTCTAAGGTATCAGGATCACCGTTGCGGCCTCAACCTTTCCCTTCAT
*
21060223 ATCTTTATGGTACCAGATTCACCGTTGCAGCCTCAATCCTTCCCAACAAATCTTCTAAGGTACCG
66 ATCTTCATGGTACCAGATTCACCGTTGCAGCCTCAATCCTTCCCAACAAATCTTCTAAGGTACCG
* ** * ** *
21060288 GCTTCACCGTTGCGGCGTCAACCTTTCCCTTCATATCTTCATGGTACCAGATTTTCTATTCCAGC
131 GCTTCACCGTTGCAGCCACAACATTTCCCTTCATATCTTCATGGTACCAGATTCGCCATTCCAGC
* * *
21060353 CTCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGCAGCCTTAACCTTTCCCTT
196 CTCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTACAGCCTCAACCTTTCCCTT
*
21060418 CATATTTTCATGGTATCGGATTCGCCATTACGGCCTC
261 CATATTTTCAAGGTATCGGATTCGCCATTACGGCCTC
* ** *
21060455 AATCTTTCCC-ATCACATCTTCTAAGGTATTGGGATCGCCGTTGCGGCCTCAACCTTTCCCTTCA
1 AATC-TTCCCTATCACATATTCTAAGGTATCAGGATCACCGTTGCGGCCTCAACCTTTCCCTTCA
* ** * * *
21060519 TATCTTCATGGTACCAGCTTCGTCGTTGCGGCCTCAATCCTTCCCACCACATCTTCTAAGGTACC
65 TATCTTCATGGTACCAGATTCACCGTTGCAGCCTCAATCCTTCCCAACAAATCTTCTAAGGTACC
* * *
21060584 GGGTTCACCGTTGCAGCCACAACATTTCCCTTCATATCTTCATGGTACCGGATTCGCCATTGC-G
130 GGCTTCACCGTTGCAGCCACAACATTTCCCTTCATATCTTCATGGTACCAGATTCGCCATTCCAG
* * * *
21060648 ACCTCAATCTTTCCTATCACATCTTCTAAGGTACCGGGTTCACTGTTACGGCCTCAACCTTTCCC
195 -CCTCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTACAGCCTCAACCTTTCCC
** * * * *
21060713 TTCATATTTTCAAGGTATCAAATTCGTCGTTGCGACCTC
259 TTCATATTTTCAAGGTATCGGATTCGCCATTACGGCCTC
21060752 AATCTTCCCT
1 AATCTTCCCT
21060762 TTCAAACCTA
Statistics
Matches: 266, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
296 6 0.02
297 255 0.96
298 5 0.02
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (297 bp):
AATCTTCCCTATCACATATTCTAAGGTATCAGGATCACCGTTGCGGCCTCAACCTTTCCCTTCAT
ATCTTCATGGTACCAGATTCACCGTTGCAGCCTCAATCCTTCCCAACAAATCTTCTAAGGTACCG
GCTTCACCGTTGCAGCCACAACATTTCCCTTCATATCTTCATGGTACCAGATTCGCCATTCCAGC
CTCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTACAGCCTCAACCTTTCCCTT
CATATTTTCAAGGTATCGGATTCGCCATTACGGCCTC
Found at i:21060753 original size:49 final size:49
Alignment explanation
Indices: 21060195--21060762 Score: 364
Period size: 49 Copynumber: 11.5 Consensus size: 49
21060185 ATCAGGTTCA
* * * * * * *
21060195 CCGTTGTGGCCTCAACCTTTCCTTTCATATCTTTATGGTACCAGATTCA
1 CCGTTGCGACCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
** * * *
21060244 CCGTTGC-AGCCTCAATCC-TTCCCAACAAATCTTCTAAGGTACCGGCTTCA
1 CCGTTGCGA-CCTCAA-CCTTTCCCTTCATATCTTC-AAGGTACCGGATTCG
* * * * **
21060294 CCGTTGCGGCGTCAACCTTTCCCTTCATATCTTCATGGTACCAGATTTT
1 CCGTTGCGACCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
** * * * *
21060343 CTATT-CCAGCCTCAATCC-TTCCCATCACATCTTCTAAGGTACCGGGTTCG
1 CCGTTGCGA-CCTCAA-CCTTTCCCTTCATATCTTC-AAGGTACCGGATTCG
* * * *
21060393 CCGTTGC-AGCCTTAACCTTTCCCTTCATATTTTCATGGTATCGGATTCG
1 CCGTTGCGA-CCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
* * * * * * **
21060442 CCATTACGGCCTCAATCTTTCCCATCACATCTTCTAAGGTATTGGGA-TCG
1 CCGTTGCGACCTCAACCTTTCCCTTCATATCTTC-AAGGTA-CCGGATTCG
* * * *
21060492 CCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCAGCTTCG
1 CCGTTGCGACCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
* * ** * * *
21060541 TCGTTGCGGCCTCAATCC-TTCCCACCACATCTTCTAAGGTACCGGGTTCA
1 CCGTTGCGACCTCAA-CCTTTCCCTTCATATCTTC-AAGGTACCGGATTCG
* * *
21060591 CCGTTGC-AGCCACAACATTTCCCTTCATATCTTCATGGTACCGGATTCG
1 CCGTTGCGA-CCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
* * * * *
21060640 CCATTGCGACCTCAATCTTT-CCTATCACATCTTCTAAGGTACCGGGTTCA
1 CCGTTGCGACCTCAACCTTTCCCT-TCATATCTTC-AAGGTACCGGATTCG
* * * * * **
21060690 CTGTTACGGCCTCAACCTTTCCCTTCATATTTTCAAGGTATCAAATTCG
1 CCGTTGCGACCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
* *
21060739 TCGTTGCGACCTCAATC-TTCCCTT
1 CCGTTGCGACCTCAACCTTTCCCTT
21060763 TCAAACCTAT
Statistics
Matches: 393, Mismatches: 104, Indels: 45
0.73 0.19 0.08
Matches are distributed among these distances:
48 12 0.03
49 189 0.48
50 184 0.47
51 8 0.02
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (49 bp):
CCGTTGCGACCTCAACCTTTCCCTTCATATCTTCAAGGTACCGGATTCG
Found at i:21069095 original size:29 final size:29
Alignment explanation
Indices: 21069063--21069123 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
21069053 GTTTAGGGTT
* *
21069063 AAAATGTAATTTTCAAAAAGTTTGAGATC
1 AAAAAGTAATTTTCAAAAAGTTTAAGATC
* * * *
21069092 AAAAAGTGATTTTTAGAAAGTTTAAGGTC
1 AAAAAGTAATTTTCAAAAAGTTTAAGATC
21069121 AAA
1 AAA
21069124 TTGAAGTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (29 bp):
AAAAAGTAATTTTCAAAAAGTTTAAGATC
Found at i:21069171 original size:30 final size:30
Alignment explanation
Indices: 21069100--21069344 Score: 157
Period size: 30 Copynumber: 8.2 Consensus size: 30
21069090 TCAAAAAGTG
*
21069100 ATTTTTAGAAAGTTTAA-GGTC-AAAT-TGA
1 ATTTTTAGAAAGTTCAAGGGTCAAAATAT-A
* *
21069128 AGTTTTGGAAAAGTTCAAGGGTCAAAATATA
1 ATTTTTAG-AAAGTTCAAGGGTCAAAATATA
*
21069159 ATTTTTAGAAAGTTC-GGAGGTCAAAATATA
1 ATTTTTAGAAAGTTCAAG-GGTCAAAATATA
* * *
21069189 ATTTTTTGAAAGTTCAAGGATCAAAACATA
1 ATTTTTAGAAAGTTCAAGGGTCAAAATATA
* * * * * **
21069219 AATTTTGGAAAATTTAAGGGTTAAAATGGA
1 ATTTTTAGAAAGTTCAAGGGTCAAAATATA
* ** *
21069249 ATTTTTAGAGAGTT-TGGGGTCAAAATGA-G
1 ATTTTTAGAAAGTTCAAGGGTCAAAAT-ATA
**
21069278 ATTTTTAGAAAGTTTGAGGGTCAAAATGA-A
1 ATTTTTAGAAAGTTCAAGGGTCAAAAT-ATA
* * *
21069308 AGTTTTGGAAAGTT--TGGGAATCAAAATATA
1 ATTTTTAGAAAGTTCAAGGG--TCAAAATATA
21069338 ATTTTTA
1 ATTTTTA
21069345 AATAAAACAG
Statistics
Matches: 169, Mismatches: 37, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
28 9 0.05
29 32 0.19
30 115 0.68
31 12 0.07
32 1 0.01
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (30 bp):
ATTTTTAGAAAGTTCAAGGGTCAAAATATA
Found at i:21069245 original size:60 final size:60
Alignment explanation
Indices: 21069035--21069262 Score: 155
Period size: 60 Copynumber: 3.9 Consensus size: 60
21069025 AATGGGGTTA
* * * * **
21069035 AAAACATAAA-TTTGGAAAGTTT-AGGGTTAAAATGTAATTTTCAAAAAGTTTGA-GATC
1 AAAACATAAATTTTAGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTTCAAGGATC
* * * * * * * *
21069092 AAAA-AGTGATTTTTAGAAAGTTTAA-GGTCAAATTG-AAGTTTTGGAAAAGTTCAAGGGTC
1 AAAACA-TAAATTTTAGAAAATTTAAGGGTTAAAATGTAATTTTTAG-AAAGTTCAAGGATC
* * * ** * * *
21069151 AAAATATAATTTTTAG-AAAGTTCGGAGGTCAAAATATAATTTTTTGAAAGTTCAAGGATC
1 AAAACATAAATTTTAGAAAATTTAAG-GGTTAAAATGTAATTTTTAGAAAGTTCAAGGATC
* * *
21069211 AAAACATAAATTTTGGAAAATTTAAGGGTTAAAATGGAATTTTTAGAGAGTT
1 AAAACATAAATTTTAGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTT
21069263 TGGGGTCAAA
Statistics
Matches: 128, Mismatches: 33, Indels: 17
0.72 0.19 0.10
Matches are distributed among these distances:
56 1 0.01
57 11 0.09
58 30 0.23
59 17 0.13
60 56 0.44
61 13 0.10
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (60 bp):
AAAACATAAATTTTAGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTTCAAGGATC
Found at i:21069314 original size:89 final size:88
Alignment explanation
Indices: 21069045--21069318 Score: 279
Period size: 89 Copynumber: 3.1 Consensus size: 88
21069035 AAAACATAAA
* * * * * * *
21069045 TTTGGAAAGTTT-AGGGTTAAAATGTAATTTTCAAAAAGTTTGAGATCAAAAAGTGATTTTTAGA
1 TTTGGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTTTGGGGTCAAAATGAGATTTTTAGA
* *
21069109 AAGTTTAAGGTCAAATTG-AAGT
66 AAGTTTAGGGTCAAAATGAAAGT
* * * * *
21069131 TTTGGAAAAGTTCAAGGGTCAAAATATAATTTTTAGAAAGTTCGGAGGTCAAAAT-ATAATTTTT
1 TTTGGAAAA-TTTAAGGGTTAAAATGTAATTTTTAGAAAGTTTGG-GGTCAAAATGA-GATTTTT
* * *
21069195 TGAAAGTTCAAGGATCAAAACAT-AAA-T
63 AGAAAGTT-TAGGGTC-AAA-ATGAAAGT
* *
21069222 TTTGGAAAATTTAAGGGTTAAAATGGAATTTTTAGAGAGTTTGGGGTCAAAATGAGATTTTTAGA
1 TTTGGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTTTGGGGTCAAAATGAGATTTTTAGA
21069287 AAGTTTGAGGGTCAAAATGAAAGT
66 AAGTTT-AGGGTCAAAATGAAAGT
21069311 TTTGGAAA
1 TTTGGAAA
21069319 GTTTGGGAAT
Statistics
Matches: 149, Mismatches: 27, Indels: 21
0.76 0.14 0.11
Matches are distributed among these distances:
86 8 0.05
87 4 0.03
88 31 0.21
89 56 0.38
90 34 0.23
91 13 0.09
92 3 0.02
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (88 bp):
TTTGGAAAATTTAAGGGTTAAAATGTAATTTTTAGAAAGTTTGGGGTCAAAATGAGATTTTTAGA
AAGTTTAGGGTCAAAATGAAAGT
Found at i:21070071 original size:11 final size:12
Alignment explanation
Indices: 21070046--21070080 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
21070036 TTTTATATTT
21070046 TTTTGTTTTTAA
1 TTTTGTTTTTAA
21070058 TTTTGTTTTT-A
1 TTTTGTTTTTAA
*
21070069 TTTTGTTGTTAA
1 TTTTGTTTTTAA
21070081 AAATCGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.74
Consensus pattern (12 bp):
TTTTGTTTTTAA
Found at i:21070077 original size:26 final size:26
Alignment explanation
Indices: 21069998--21070078 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
21069988 AAAAACTAAG
*
21069998 TTTTAATTTTCTTTTTACTTTTCTT-T
1 TTTTAATTTTGTTTTTA-TTTTCTTGT
* * *
21070024 TTTCAAATTTGGTTTTATATTTTTTTGT
1 TTT-TAATTTTGTTTT-TATTTTCTTGT
*
21070052 TTTTAATTTTGTTTTTATTTTGTTGT
1 TTTTAATTTTGTTTTTATTTTCTTGT
21070078 T
1 T
21070079 AAAAATCGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 14 0.31
27 25 0.56
28 6 0.13
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.74
Consensus pattern (26 bp):
TTTTAATTTTGTTTTTATTTTCTTGT
Found at i:21070252 original size:21 final size:21
Alignment explanation
Indices: 21070227--21070268 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21070217 TTTTTTTGAT
*
21070227 ATATATCAAAATAA-AAATATA
1 ATATAT-AAAAAAATAAATATA
21070248 ATATATAAAAAAATAAATATA
1 ATATATAAAAAAATAAATATA
21070269 TTAAAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
ATATATAAAAAAATAAATATA
Found at i:21070257 original size:15 final size:16
Alignment explanation
Indices: 21070237--21070276 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
21070227 ATATATCAAA
21070237 ATAAAAATAT-AATAT
1 ATAAAAATATAAATAT
*
21070252 ATAAAAAAATAAATAT
1 ATAAAAATATAAATAT
21070268 ATTAAAAAT
1 A-TAAAAAT
21070277 GATATACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 6 0.29
17 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATAAAAATATAAATAT
Found at i:21070258 original size:16 final size:17
Alignment explanation
Indices: 21070239--21070276 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
21070229 ATATCAAAAT
21070239 AAAAATAT-AATATATA
1 AAAAATATAAATATATA
*
21070255 AAAAA-ATAAATATATT
1 AAAAATATAAATATATA
21070271 AAAAAT
1 AAAAAT
21070277 GATATACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATAAATATATA
Found at i:21070260 original size:23 final size:23
Alignment explanation
Indices: 21070225--21070269 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21070215 TATTTTTTTG
**
21070225 ATATATATCAAAATAAAAATATA
1 ATATATAAAAAAATAAAAATATA
*
21070248 ATATATAAAAAAATAAATATAT
1 ATATATAAAAAAATAAAAATAT
21070270 TAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
ATATATAAAAAAATAAAAATATA
Found at i:21070261 original size:17 final size:17
Alignment explanation
Indices: 21070239--21070275 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
21070229 ATATCAAAAT
21070239 AAAAATATAATATA-TAA
1 AAAAATA-AATATATTAA
21070256 AAAAATAAATATATTAA
1 AAAAATAAATATATTAA
21070273 AAA
1 AAA
21070276 TGATATACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATAAATATATTAA
Found at i:21070639 original size:11 final size:11
Alignment explanation
Indices: 21070623--21070655 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
21070613 ATCACATGGT
21070623 TGACGTGACAC
1 TGACGTGACAC
21070634 TGACGTGACAC
1 TGACGTGACAC
*
21070645 TGATGTGACAC
1 TGACGTGACAC
21070656 GTGCTGACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (11 bp):
TGACGTGACAC
Found at i:21071159 original size:24 final size:22
Alignment explanation
Indices: 21071131--21071176 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
21071121 TATAAATATA
21071131 ATTATAGTATTAAAAATATTTTAT
1 ATTATA-TATTAAAAAT-TTTTAT
* *
21071155 ATTATATTTTTAAAATTTTTAT
1 ATTATATATTAAAAATTTTTAT
21071177 TTCACTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 8 0.40
24 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATTATATATTAAAAATTTTTAT
Found at i:21074909 original size:14 final size:14
Alignment explanation
Indices: 21074890--21074920 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
21074880 AAGATACTCA
21074890 TCTAATTTGTTGGC
1 TCTAATTTGTTGGC
21074904 TCTAATTTGTTGGC
1 TCTAATTTGTTGGC
21074918 TCT
1 TCT
21074921 TCTATGCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.19, T:0.52
Consensus pattern (14 bp):
TCTAATTTGTTGGC
Found at i:21078434 original size:219 final size:222
Alignment explanation
Indices: 21078020--21078466 Score: 699
Period size: 219 Copynumber: 2.0 Consensus size: 222
21078010 ATGGTGTTTA
* * *
21078020 AAATAGAACCAAGAGTTGAGTCAAAATCCCATGAATTATAGTAATAAAACCTAAACCTAAAATCA
1 AAATAGAACCAAGAGTTCAGTCAAAATCCCATCAATTATAGTAATAAAA-C-AAACCTAAAAGCA
21078085 ATTAAATTACTGAACTAATTTATTCTTTACCAGTTTACTATTTCTTGATCAGTTCATGGTTAAAT
64 ATTAAATTACTGAACTAATTTATTCTTTACCAGTTTACTATTTCTTGATCAGTTCATGGTTAAAT
* * *
21078150 GCCAGTTATTGGACCAAACAAGTCACCAATTGCCAGTTCAATCATCCAGTTTGGTTCTTTATTCA
129 GCCAGTTATTGGACCAAACAAGTCACCAATTACCAGTTCAACCATACAGTTTGGTTCTTTATTCA
21078215 TTGATATGCCAACACAAGGAATTTTTCATGC
194 TTG--ATGCCAACACAAGGAATTTTTCATGC
* * *
21078246 AAATAGAACCAAGAGTTCAGTTAAAATCCCATCAA-T-TA-TAATAATA-AAACCTAAAAGCGAT
1 AAATAGAACCAAGAGTTCAGTCAAAATCCCATCAATTATAGTAATAAAACAAACCTAAAAGCAAT
21078307 TAAATTA-TAGAACTAATTTATTCTTTACCAGTTTACTATTTCTTGATCAGTTCAT-GTTAAATG
66 TAAATTACT-GAACTAATTTATTCTTTACCAGTTTACTATTTCTTGATCAGTTCATGGTTAAATG
*
21078370 CCAGTTCTTGGACCAAACAAGTCACCAATTACCAGTTCAACCATACAGTTTGGTTCTTTATTCAT
130 CCAGTTATTGGACCAAACAAGTCACCAATTACCAGTTCAACCATACAGTTTGGTTCTTTATTCAT
* *
21078435 TGATGCTAACACAAGGATTTTTTCATGC
195 TGATGCCAACACAAGGAATTTTTCATGC
21078463 AAAT
1 AAAT
21078467 TTCATTAAGA
Statistics
Matches: 208, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
217 28 0.13
219 72 0.35
220 66 0.32
223 7 0.03
224 2 0.01
225 1 0.00
226 32 0.15
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (222 bp):
AAATAGAACCAAGAGTTCAGTCAAAATCCCATCAATTATAGTAATAAAACAAACCTAAAAGCAAT
TAAATTACTGAACTAATTTATTCTTTACCAGTTTACTATTTCTTGATCAGTTCATGGTTAAATGC
CAGTTATTGGACCAAACAAGTCACCAATTACCAGTTCAACCATACAGTTTGGTTCTTTATTCATT
GATGCCAACACAAGGAATTTTTCATGC
Found at i:21078909 original size:22 final size:21
Alignment explanation
Indices: 21078884--21078924 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21078874 TTTTCTTAAG
*
21078884 ATTACGTATGTTTTTTTTCTGT
1 ATTACGTAT-TTTTCTTTCTGT
*
21078906 ATTATGTATTTTTCTTTCT
1 ATTACGTATTTTTCTTTCT
21078925 AGATGTGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.15, C:0.10, G:0.10, T:0.66
Consensus pattern (21 bp):
ATTACGTATTTTTCTTTCTGT
Found at i:21083070 original size:16 final size:16
Alignment explanation
Indices: 21083051--21083085 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
21083041 CTCAGGCTTT
21083051 CATGAAAGATAAATTG
1 CATGAAAGATAAATTG
21083067 CATGAAAGATAAATTG
1 CATGAAAGATAAATTG
21083083 CAT
1 CAT
21083086 AGTTGTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (16 bp):
CATGAAAGATAAATTG
Found at i:21084041 original size:155 final size:156
Alignment explanation
Indices: 21083712--21084055 Score: 528
Period size: 155 Copynumber: 2.2 Consensus size: 156
21083702 GGCGCAATAC
* * * * *
21083712 CGTTGGCTAATCCAACTAAAGCTGGGCTCACTTATTGTTGTCAGTTTAACTGGCTAGTGTTGGGC
1 CGTTGGTTAATCCAACTAGAGCTGGGCTCACTTATTGTTGTCAGTTTAACTGACTAGTGCTGGAC
* * * *
21083777 ACACATTCGTCGGTTATCCGACTAGCGTTGGGCACAAATTCTATTGCGGTTTATCTGCTAAGCAC
66 ACACATTCCTCGATTATCCGACTAGCGTTGGGCACAAATTCTATTACGGTTTATCAGCTAAGCAC
21083842 TAGGTGCCAAAAATTGACGGAATTAT
131 TAGGTGCCAAAAATTGACGGAATTAT
*
21083868 CATTGGTTAATCCAACTAGAGCTGGGCTCACTTATTGTTGTCAGTTTAACTGACTAGTGCTGGAC
1 CGTTGGTTAATCCAACTAGAGCTGGGCTCACTTATTGTTGTCAGTTTAACTGACTAGTGCTGGAC
* ** *
21083933 ACACATTCCTCGATTATCCGACTAGTG-TGGGTGCAAATTCTATTACGGTTTATCAGCTAGGCAC
66 ACACATTCCTCGATTATCCGACTAGCGTTGGGCACAAATTCTATTACGGTTTATCAGCTAAGCAC
** *
21083997 TAGGTGCCAGGAATTGACGGAATTCT
131 TAGGTGCCAAAAATTGACGGAATTAT
21084023 CGTTGGTTAATCCAACTAGAGCTGGGCTCACTT
1 CGTTGGTTAATCCAACTAGAGCTGGGCTCACTT
21084056 TTAATATCGT
Statistics
Matches: 170, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
155 87 0.51
156 83 0.49
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (156 bp):
CGTTGGTTAATCCAACTAGAGCTGGGCTCACTTATTGTTGTCAGTTTAACTGACTAGTGCTGGAC
ACACATTCCTCGATTATCCGACTAGCGTTGGGCACAAATTCTATTACGGTTTATCAGCTAAGCAC
TAGGTGCCAAAAATTGACGGAATTAT
Found at i:21087328 original size:48 final size:48
Alignment explanation
Indices: 21087262--21087381 Score: 188
Period size: 48 Copynumber: 2.5 Consensus size: 48
21087252 TTTATGCTTT
*
21087262 ATTAAGT-TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCATC
1 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATC
* * *
21087309 ATTAAGTGTTTTGTTTGTTAAATGCGTCTTTGTTTAGTAATCTGCATT
1 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATC
*
21087357 ATTAACTGTTTTGTTTGTTAAATGC
1 ATTAAGTGTTTTGTTTGTTAAATGC
21087382 TTTGTTAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 7 0.10
48 60 0.90
ACGTcount: A:0.23, C:0.09, G:0.15, T:0.53
Consensus pattern (48 bp):
ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATC
Found at i:21089853 original size:215 final size:216
Alignment explanation
Indices: 21088469--21103201 Score: 13636
Period size: 216 Copynumber: 67.9 Consensus size: 216
21088459 ATTCAAGGAT
**
21088469 AAAACTTGTTTACAAAATGACAAACTATTTAGAGAAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * * * *
21088534 TTGGAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* *
21088599 TCATAAAACTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21088664 TAACTTTTTAATTCAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* *
21088685 AAAACTTGTTTACAAAATGCCAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * *
21088750 TTTGAAAATTGCTCGATA-GAATGGATCATCATGAATACTTTAAGGAAGCC-AAGTTATAAAAGA
66 TCAGAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAA-CCAAAGTTATAAAAGA
* * * * ** * *
21088813 TCTCCTAAAAGTTTGACAAGTTCGGAAGTTCTTCCATGAAGTAAGAGAGAAACAATTCCCACATA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* *
21088878 AATAAGTTTTTAATTCAAATACT
194 AATAAGTTTTTAATTCAAAGACC
**
21088901 AAAACTTGTTTACAAAATGACAAACTATTTAGGTCAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* *
21088966 TCAGAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
*
21089031 TAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21089096 TAAGTTTTTAATTAAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* *
21089117 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGGTGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21089182 TC-GAAAAATTGCTAGATGGAATAGATCGTCTTGAAAACTTTATGCAA-CATAAGTTATAAAAGA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGA
* * * * * * ** *
21089245 ACTCATAAAAGTTTGAAAAGTTTGAAATTTAC-TCCAAGAACCAAGTTAGAAACAATACTCACGT
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTT-CGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
* * *
21089309 AACTAAGTTTTTAATTCAAATACT
193 AAATAAGTTTTTAATTCAAAGACC
* * * * * *
21089333 AAAAGTTTTTTACATAATGACAAACTATTTAGACCAAATGATACAATTTACCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** ** * *
21089398 TC-GAAAAATTGCTCGAAGAAATTAATCGTCTT-AATTACTTTAAGGAAGAAAAATTGTAAAAGA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
21089461 ACTCATAAAAGTCTGGCAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
*
21089526 AATAAGTTTTTAATTCAAAGACT
194 AATAAGTTTTTAATTCAAAGACC
* * *
21089549 GAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGGTGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
21089614 TTAGAAGATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* *
21089679 TCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21089744 TAAG-TTTTAATTCAAAGACT
196 TAAGTTTTTAATTCAAAGACC
* *
21089764 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCATGAAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * *
21089829 TCAGAAAATTGCTCGAAGGAATGGATCATCACGAATACTTTAAGGAACCGAAGCTA-AAGAAGAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA-AAGAA
* * * *
21089893 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTGTCACGGAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21089958 ATAAATTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * * * * * ****
21089980 AAAACTTTTTTACAAAATGAC-CA-TATTTAGGCCTAATGATGTGATTTCCCAAGCATTCCTTGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * * *
21090043 TTGGAAAATTGCTCGAAGGAATGTATTGTCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21090108 TCCTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAAGAATAAAGAGAGAAATAATTCTCACGTAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCG-TCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* *
21090173 ATAAGATTTTAATTAAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * * * * *
21090195 AAAACTTGATTACCAAATGGCAAACAATTTAGACCAAAGGATGTGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** *
21090260 TC-GAAAAATTG-TACGAATAAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGA
66 TCAG-AAAATTGCT-CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
21090323 ACTCGTAAAAGTTTGACAAGTTCGAAATTTCATCCATGAACGAAGAGAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* *
21090388 AATAAGGTTTTAATTCAATGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * *
21090411 AAAACTTGTCTACAAATTGACAAACTATTTAAACCAAATGATGCGATTTACAGAGCACGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * ** * *
21090476 TCGGAAAACTGCTCGATGGAATACATCATCTTGAATACTTTAA-GAAACAGAAGTTATAAAAGAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAA
* * * * * **
21090540 CTCGTGAAAGTTTGACAAGTTTGAAAGTTAC-TCCAAGAACCAAGATAGAAACAATTCTCATTTA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTT-CGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* * **
21090604 AATAAATTTTTACTTCAAAGATT
194 AATAAGTTTTTAATTCAAAGACC
* *** * * *
21090627 AAAAGTTGTTTACATTTTGACAAACTATTTAGACCATAA-GATTCGATTTCCAGAGCATGTAATG
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATG
* * * *
21090691 TTC-GAAAAATTGCTTGAAGGAATAGATCGTCTTGAATACTTTAAGGAAGCAAAGTTATAAATGA
65 TTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * * * * * *
21090755 ACACGTAAAAGTTTAACAAGTGCAGAAGTTCGTCCAAGAACCAAGGGATAAATAATTCTCATGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
*
21090820 AATAAGTTTTTAATTAAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * *
21090843 AAAACTT-TGTTACAAAATGACGAAA-TATTTAGACCAAGTGATGCAATTTCCCGAGCATGGAGT
1 AAAACTTGT-TTACAAAATGAC-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * *
21090906 GTTCAAAAAATTGCTCAAAAGGAATGAATCGTCTTGAATAGTTTAAGGAACCAAAGTTATATAAG
64 GTTCAGAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* ** * * * * * * *
21090971 AAGTCGTACTAGTTTGACAAGTGC-GACAATTCGTCCAAAAACCAAGAGAAAAATAATTCTCATG
128 AACTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
* *
21091035 GAAATACGTTTTTAATTCAAAGACC
192 TAAATAAGTTTTTAATTCAAAGACC
* * * * *
21091060 AAAACTTGTTTGCAAAATGACAAACTATTTAGACCATAGGATGCGATTTCCTGAGCAT-G---GC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
21091121 T-AGGAAAATTGCACGAAGGAGTGGATCGTCTTGAATACGTTAAGGAACCAAAAAGCTATGAAAG
66 TCA-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC--AAAGTTATAAAAG
* * * * * * * * *
21091185 AACTCGTAAAATTTTGAAAAGTTTGAAAGTTCATCCATGAACCAAGAGAGAAACAAATCTCAGGT
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
* *
21091250 TAATAAGATTTTAATTCAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * * * * *
21091274 CAAACTAGTTTACAAATTGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGACTAT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * * *
21091339 TCAGAAAATTGCTTGATTGAATAGATCTTCTTGAATACTTTAAGCAA-TAGAAGTTATGAAAGAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAA
* * * *
21091403 CTCGTAAAAGTTTGGCAAGTTCGAAAGTTCATCCAAGAAC-AAGAGAGAAATAATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* **
21091467 ATAAGTTTTTAATTCAAACAAT
195 ATAAGTTTTTAATTCAAAGACC
* **
21091489 AAAACTTGTTTACAAAATGACAAACAATTTAGAGAAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
21091554 TCAAAAAATTGCACGAAGGAAAGGATC-TGGTTGAATACTTTAAGGAACCGAAGTTAAAAAATAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGT-CTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * *
21091618 CTCGTCAAAGTTTGACAAGTTCGGAAGTTCGTGCAACAGCAAAGGGAGAAACAATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* *
21091683 ATAAGTTTGTAATTTAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * *
21091705 AAAACTTGTTTACAAAATAACAAACTATTTAGACCAAATGATGGGATTTCCCGAGCACGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21091770 TTAGAAAATTGCTCAAAGGAATGGTTCGTCTTCAATACTTTAAGGAAGCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * *
21091835 TCGTAAAAGTTTGATAAGTTTGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21091900 TAAGTTTTTAATTCAAAGACT
196 TAAGTTTTTAATTCAAAGACC
* * * *
21091921 AAAACTTGTTTATAAAAAT-ACAAACTATTTATG-CCATATGATGCGATTTCCCGAACGTGGAAT
1 AAAACTTGTTTA-CAAAATGACAAACTATTTA-GACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * *
21091984 GTTTAGAAAATTGCTAGAA-GAAAGAATCGTCTTCAATACTTTAAGGATA-CAAAGTTATAAAAG
64 GTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACCAAAGTTATAAAAG
* * * * *
21092047 AACTAGAAAAAGTTTGACAAGTTCAGAAG-TCTGTCCAAGAACAAAGAGAGAAATAATTCTCATG
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTC-GTCCAAGAACAAAGAGAGAAACAATTCTCACG
21092111 TAAATAAGTTTTTAATTCAAAGACC
192 TAAATAAGTTTTTAATTCAAAGACC
* *
21092136 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAAAGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21092201 TC-GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAAGGAATCGAAGTTAAAAAATAA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
*
21092265 CTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21092330 ATAAGTTTTCAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
*
21092352 AAAACTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21092417 TC-GAAAAATTGCTCAAATGAATGGATCGTCTTCAATACTTTAAGGATCCGAAGTTACAAAAGAA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
*
21092481 CTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
21092546 ATAAGTTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * *
21092568 AAAACTTGCTTAC-AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCAAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * * *
21092632 TTAGAAAATTTCTCTAAGGAATGGATC-TAGTTGGATACTTTAAGGAATCGAAGTCAAAAAAATA
66 TCAGAAAATTGCTCGAAGGAATGGATCGT-CTTGAATACTTTAAGGAACCAAAGT-TATAAAAGA
* * *
21092696 ACTCGTATAAA-ATTGACAAGTTTGAAAGTTCGTCCAAGAACAAAAGAGAGAAACAATTCTCACG
129 ACTCGTA-AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC-AAAGAGAGAAACAATTCTCACG
* * *
21092760 TAAATAAGTTTATAATTAAAAAACC
192 TAAATAAGTTTTTAATTCAAAGACC
* * * * *** *
21092785 AAAAACTTTTTTTC-TAATGACAAACTATTTAGACCAAATGATGCAATTTTTTGAGCATGGAATA
1 -AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * *
21092849 TTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGTACCGAAGTTATAATAGAA
65 TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * *
21092914 GTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCACACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21092979 ATAAGTTTTTAATTCAAAGACT
195 ATAAGTTTTTAATTCAAAGACC
* * * * *** *
21093001 AAGATTTTTTTATAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAATTTGGAAGGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * *
21093066 TCA-AAAATTGCTCGAAAGGATTTAATCGTCTTGAATACTTTAAGGAACCAAATTTATATAAGAA
66 TCAGAAAATTGCTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * * * *
21093130 CACGTACAAGTTTAACAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCACACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21093195 ATAAGTTTTTAATTTAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
*
21093217 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATCT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * *
21093282 TCAGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAGCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * *
21093347 TTGTAAAGGTTTGAGAAGTTCGGAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21093412 TAAGTTTTTAATTCAAAGACT
196 TAAGTTTTTAATTCAAAGACC
* ** * * *
21093433 AAAACTTGTTTACAAAAAGACAAACTATTTATTCCATATGATGCGATTTCCCGAACGTGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* *
21093498 TCAGAAAAGTGCTCGAAGGAATGGATCGTCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAG
66 TCAGAAAATTGCTCGAAGGAATGGA---TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
21093563 AACTAGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACAT
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
*
21093628 AAATAAGTTTTTAATACAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * *
21093652 AAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCGATTTCTCGAGCACGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21093717 TCAAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAAGCAACCGAAGTTA-ATAAATAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAA
** * *
21093781 CTCGTAAAAGTTTTTCAAGTTC-GATATTTCGTCCAAGAACAAAGAGAGAAACAATTATCACGTA
130 CTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
21093845 AATAAGTTTTTAATTCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* *
21093868 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21093933 TCAG-AAATTGCTCTAAGGAATGGATCTTGTTGAATAATTTAAGGAACCAAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* ** * *
21093997 TCGTAAAAGTTTCACAAGTTCAAAAGTTTGTCCAAG-ACAAAGAGAGAAACAATTCTCATGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21094061 TAAGTTTTCAATTCAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* * * * *
21094082 AAAACTTGTTTACGAAATGACAAATTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * * *
21094147 TC-GAAAAATTGCTCGAAGTAATGGATCAACTGGAATACTTTAAGGAAGCAAAGCTATAATAGAT
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * *
21094211 CTCCTAAAAGTTTGACAAGTTCGGAAGTTCGTCCATGAACTAAGAGAGAAAGAATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
** *
21094276 ATAAAATTTTAATTCAAAGACT
195 ATAAGTTTTTAATTCAAAGACC
* * * *
21094298 AAAACTTGTTTACAAAATGACTAACTATTTAGACCAAATGATGCAATTTCCCAAGCATGGAAAGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* *
21094363 TCATAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * *
21094428 TCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAATC-AAGAGAGACACAATTCACACATAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCACGTAA
*
21094492 ATAAGTTTTT-ATTCAAAGACT
195 ATAAGTTTTTAATTCAAAGACC
** *
21094513 AAATTTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * * * ** * *
21094578 TCAAAAAATTGCTCGTGGGAATCGATCTTCATGGATACTTTAAGGAGCTGAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
*
21094643 TCGCAAAAGTTTGACAAGTT-GGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21094707 AAAGTTTTTAATTCAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* * *
21094728 -AAACTTTTTTACAAAATGACAAACTATTTAGACCAAGTGATGCGATTTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
21094792 TCAAAAAATTACTCGAAGGAATGGATCATCTTGAATACTTTAAGCAACCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21094857 TCGTAAAAGTTTGACAAGTTCTGAAGTTCGTACAAGAACAAAGAGAGAAAAAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
21094922 TAAGTTTTTAATTCAAAGACC
196 TAAGTTTTTAATTCAAAGACC
* **
21094943 AAAACTTGTTAATGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
21095008 TCGGAAAATAGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAGCGAAGTTATAAATGATC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * *
21095073 TCCTAAAAATTTGACAAGTTCGGAAGTTCGTCCATGAAC-AAGAGAGAAACAACATTCTCAAGTA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAAC-A-ATTCTCACGTA
*
21095137 AATAAGTTTTTAATTCAAAGACT
194 AATAAGTTTTTAATTCAAAGACC
21095160 AAAACTTGTTTACAGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
1 AAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * **
21095225 TTC-GAAAAATTGTTCGAAGGAATGCATCTTTTTGAATACTTTAAGGATTCAAAGTTATAAAAGA
65 TTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
** * * * * *
21095289 ACAAGTAAACGTTTGACAAGTTCTGAAGTTCATCCACGAACAAAGAGAGAAATAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
*
21095354 AATAAGTTTCTAATTCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * * * *
21095377 AAATCCTGTTTACAAATTGACAAACTGTTTAGACCAAATGATGTGATTCCCCAAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-
* * * *
21095442 TTGA-AAAATTGCTCGATGGAATATAGATCGTCTTGAATACTTTAAGCAA-CAGAAGTTATAAAA
65 TTCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAA
* * *
21095505 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA-AAAACAAGAGAGAAACAATTCTCAC
127 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACA-AAGAGAGAAACAATTCTCAC
** * *
21095569 GTACTTATG-TTTTAATTCAAAGACT
191 GTAAATAAGTTTTTAATTCAAAGACC
* * **
21095594 AAAACTTGATTT-CAAAATGACAAACTATTTAGACCAAATAATGAGATTTCTTGAGCATGGAATG
1 AAAACTTG-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* ** * *
21095658 TTCGGAAAATTGCTCGTGGGAATGGAT-G--TTGAATACTTTAAGGATCCAAAGTTATAAATGAA
65 TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * *
21095720 CTAGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCATGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21095785 ATAAGTTTTTAATTCAAATACC
195 ATAAGTTTTTAATTCAAAGACC
* * * * * * * *
21095807 AAATCCTGTTTACAAATTGACAAACTGTTTAGATCAAATGATGCAATTCCCCGAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-
* * * * *
21095872 TTGA-AAAATTGCTCGATGGAATATAGATCGTCTTGAATACTTTAAGCAA-CAGAAGTTAAAAAA
65 TTCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAA
* * *
21095935 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAGACAATTCTCACG
127 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
* * *
21096000 TACATATG-TTTTAATTCAAAGACT
192 TAAATAAGTTTTTAATTCAAAGACC
* * * * *
21096024 AAAACTTGATTGCAAAATGACAAACTATTTAGACCAAATGATG-TAATTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * *
21096088 TCGGAAAATTGCTCGTGGGAATGGATCTTGTTGAATACTTTAAGGATCCGAAGTTATAAAAG-AC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21096152 TAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAGAGAGAGAAATAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
21096217 TAAAGTTTTTAATTCAAAGACC
196 T-AAGTTTTTAATTCAAAGACC
* * * * * * *
21096239 AAAACTTGTTTACAAATTGAGAAACTGTTTAGACCAAATGATGCAATTCCCCGAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * **
21096304 TCAAAAAATTACTCGATGGACGTAGATCGTCTTAAATACTTTAAGCAATAAAAGTTATAAAAGAA
66 TCAGAAAATTGCTCGAAGGA-ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * **
21096369 CTCGTTAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAAACGAGAGAGAGAAACAATTCTCACAC
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG-AAC-AAAGAGAGAAACAATTCTCACGT
* *
21096434 AAATAAGTTATTAAATTCAAAGACT
193 AAATAAGTT-TTTAATTCAAAGACC
* * * * * *
21096459 AAAACATGTATACAAAATGACGAACTATTTCGACCAAATAATGCGATTTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * * * *
21096524 TCAGAAAATTGCTCGTGGGAATGGATCTTCTTGAATATTTTAGGGAACCAAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21096589 TCGTAAAAGTTTGACAAGTTCGGAAGTTGGTCCAAGAACTAAGAGAGAAAAAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21096654 TAAGTTTCTAATTCAAAGACC
196 TAAGTTTTTAATTCAAAGACC
** *
21096675 AAAACTTGTTTATTAAATGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21096740 TC-GAAAATAGCTTGAAGGAATGGATCGTCTTGAATAATTTAAGGAAGCGAAGTTATAAAAGATC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * * *
21096804 TCCTAAAAGTTTAACATGTTTGTTGAAGTTCGTACATGAACCAAGAGAGAAACAATTCTCACGTA
131 TCGTAAAAGTTTGACAAGTTCG--GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* * *
21096869 AATAGGTTTTTAATTCAAAAACT
194 AATAAGTTTTTAATTCAAAGACC
* * *
21096892 AAAACTTGTTTACAAAAATGACAAAATATTTAGACCAAATGATGCGATTCCCCGAGCATGTAATG
1 AAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * ** * *
21096957 TTCCA-AAAATGGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGATTCGAAGTTATAAATGA
65 TT-CAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* *
21097021 ACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
21097086 AATAAGTTTTTAATTCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * * * * *
21097109 AAAACCTGTTTACAAATTGACAATCTGTTAAAAACAAAATGATGCGA-TTCCCTGACCATGGATT
1 AAAACTTGTTTACAAAATGACAAACTATT-TAGACCAAATGATGCGATTTCCC-GAGCATGGAAT
* * * * *
21097173 GCTTCA-AAAATTGCTCGATGGATTATAGATCGTCCTGAATACTTTAA-GCAGCAGAAGTTATAA
64 G-TTCAGAAAATTGCTCGAAGGA--ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAA
* * *
21097236 AAGAACTCGTAAAAGTTGGACAAGTTTGAAAGTTCGTCCAAGAATC-AAGAGAGAAACAATTCTC
125 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTC
* * *
21097300 ATGTAAATAAGTTTTTAATTTAAAGACT
189 ACGTAAATAAGTTTTTAATTCAAAGACC
* * * *
21097328 AAACCTTGGTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
21097393 TCGAGAAATTATTGGT-G--GGAAAGGATCTTCTTGAGTAC-TTAAGGAACCGAAGTTAAAAAAT
66 TC-AGAAA--ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * *
21097454 AACTCGTAAAAGTTTGAGAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
* *
21097519 AAAAAAGTTTATAATTCAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * * *
21097543 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-G--G-AATATT-CAGAAG-TTCGAAA
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT-TTCCCG-AGCAT-GGAA
* * * * * * * *
21097602 TGTTC-GAAAAATTGCTCAAAGGAATGCATTGTCTTGAAAACTTGTTTA-CAA--AAA-TAAAAA
63 TGTTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-T-TTAAGGAACCAAAGTTATAA
* ** ** * * ** ***
21097662 ATATGTATAC-CATATGATGCGATTTCCCGAGCGT-GGAATGTTCG---AA-AA-ATTGCTCGAA
125 A-A-G-A-ACTCGTA--A-AAG-TTTGACAAG-TTCGGAA-GTTCGTCCAAGAACAAAGAGAGAA
** ** * * * * **
21097720 GGAATGGATCGTCTTAAAT-A-CTTTAAGGATTCAAAGTTTATAG
180 ACAAT-TCTC-ACGTAAATAAGTTTTTA--ATTCAAAG---A-CC
** * ** * ** * * * *
21097763 AAGAACTAGTAAAGTTTGACAAGTTCG-GAAGTTCGTCAAAGA-AAAAAGAGAGAAACAATTCTC
1 AA-AACT--T---GTTT-ACAAAAT-GACAAACT-AT-TTAGACCAAATGA-TG---CGATT-TC
* * * * ** **** *
21097826 ACGTA-AAT--AAGTTTTTA-ATTCAAA--GAC-C-AA--AACTTGTTTACAAAATGACAAACTA
51 CCG-AGCATGGAA-TGTTCAGA---AAATTG-CTCGAAGGAA--TGGAT-CGTCTTGA-ATACT-
* * *** *** * ** * * * * * *
21097881 TTTAGG--CCAAA-TGATGCGATTTCCCG-AGCA--TGGA-ATGTTCGAAAAATT-GCTCGAAGG
105 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-GAAGTTCG-TCCAAGA
** ** **** * * * * * *
21097938 A-ATGGATCGTCTTGAATACTTTAAGCAATAGAAG---TT-A-TAAAAGAACTC
168 ACAAAGAGAG-AAACAATTC-TCACGTAA-ATAAGTTTTTAATTCAAAG-AC-C
* ** ** * * * * * *
21097986 GTAAAA---GTTTGACTAGTTCGA-AAGTTCATCTAAGAACAAA-GA-GAGAAACAATTCTCAAG
1 --AAAACTTGTTT-ACAAAAT-GACAAACT-AT-TTAGACCAAATGATGCG----ATTTCCCGAG
* *** * * * ***
21098045 TAAATAAGTTTTTAATTCAAAGACCAAAATTGTTTAC-AA--AATGACAAAATACTTAGACCAAA
56 --CAT--G-GAAT-GTTC--AG---AAAATTG-CT-CGAAGGAATG-GATCGT-CTT-G----AA
* * *** *** * **
21098107 TGATGCGATTTTTCGAGCATGGAAAGTT-TGGAAAATTTCTC-TAAGGAA--TGGATCTTGTT--
101 T-A--C----TTT-AAGGAACCAAAGTTAT--AAAAGAACTCGTAA--AAGTTTGA-CAAGTTCG
* * ** * **
21098166 GATACTT--T--AAGGAACCGAAGTTA-AAA-AATAACT--CGT-AA-AAGTTTGAGAAGTTCGA
153 GA-AGTTCGTCCAA-GAA-CAAAGAGAGAAACAAT-TCTCACGTAAATAAGTTT-TTAA-TTC-A
**
21098221 AAGTTC
211 AAGACC
*** ** * * * * * *** * ** *
21098227 -GTCCAAG--AACAAAGA-GAGAAACAATTCTCATGTA--AATAAGTTTTTAATTCAAAGACCA-
1 AAAACTTGTTTACAAA-ATGACAAACTATT-T-A-G-ACCAA-ATGATGCGATTTC-CCGAGCAT
* ** * * * * **** ** * *
21098285 --AATGATGC-G---ATTTTTCG-A-GCATGGAAT-GT-TCGAAAAATTGCTCGAAGGAATG-GA
59 GGAATG-TTCAGAAAATTGCTCGAAGGAATGG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTA
* * * * * * * ** * *
21098339 T---CG-ACT--TGAAACTTT-A-AGGATCCGAAGTT-AT--AA-AACAACTAGTA-AAAAAAGT
122 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAG-AGAAACAATT
** * ** ** ** **
21098391 GACAAGTTCGA-AAGTTCATCCAAGAACAAAGAGAG
186 CTCACG-TAAATAAGTT--TTTAA-TTCAAAGA-CC
* * * * * ***** * * * * *
21098426 AAAAATT-CTCACGTAAATAAGTTTTTAATTCAAAGGCCAAA--ACT-TG-TTT-AC-A-AATTG
1 AAAACTTGTTTAC-AAAATGACAAACT-ATT--TAGACCAAATGA-TGCGATTTCCCGAGCA-TG
* * *** * * * * *
21098483 ACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATAGA-C-TGCTTGAAAAATTGCTTGAT
60 --GAA-TGTTCAGA--AAAT--TGC---TCGAAG-GAATGGATCGT-CTTG---AA-TACTTTAA
* * ** ** * *
21098546 GGAA-TATAGATCGTCCTGAATACTTTAAGCAACAGAATTTATAAACAACTCGTAAAAGTTTGAC
109 GGAACCA-A-A--G---T---TA---T-A--AA-AGAACTCGTAAA-AGTTTG-ACAAG-TT--C
* * *
21098610 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAACAATTCTCATGTACATAAGTTTTTAATTC
152 --G---G-AAGTTCGTCCAAGAACAAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTC
*
21098675 AAAAGGACT
210 -AAA-GACC
* * * * * * ** *
21098684 AAAACTTGATTGCAAAATGACAAACTATTTATACAAAATGAAGTGATTTCTAGAGCATGAAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * ** * * *
21098749 TC-GAAAATTGCTCGTGGGAATGGATCTTCAAGAATACTTTAAGGAACCGAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21098813 TCGTAAAAGTTTGAGAAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AA
* * *
21098878 AAAAGTTTATAATTCAAGGACC
195 ATAAGTTTTTAATTCAAAGACC
*** * * * * * *
21098900 AAAACTTGTTTACATCTTGACAAACTGTTTAGACCAAATGATGCAATTCCCCGAGCCTAGACTGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * *
21098965 TCCA-AAAATTGCTC-AATGGAACGTACATCCTCTTGAATACTTTAAGCAA-TAGAAGTTATAAA
66 T-CAGAAAATTGCTCGAA-GGAA--TGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAA
*
21099027 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-ACAAGAGAGAAACAATTCTCA
126 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACA-AAGAGAGAAACAATTCTCA
* * *
21099091 TGTAAATTAAGTTTTTAATTCAATGACT
190 CGTAAA-TAAGTTTTTAATTCAAAGACC
* * ** * *
21099119 AAAACATGTATACAAAATGATGAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGTAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * ** * *
21099184 TCAAAAAATTGCTCGTGGGAATGGATCTTCTGGAATAC-TTAGGGAACTGAAG-TAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * **
21099247 TCATAAAAGTTTGACAAGTTCGTAAGTGGGTCCAAGAACTAAGAGAGAGAAACAATTCTCACGTA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC-AA-AGAGAGAAACAATTCTCACGTA
*
21099312 AATAAGTTTTTAATTCATAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * *
21099335 AAAACTTGTTTACAAAATGACAAATTATTTAGAACAAATGATTCGATTTCCAGAGAATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * *
21099400 TCAGAAAATTGCTCGAAGGAATGGATCACCTTGAATACTTTAAGGATCCGAAGTTATATAAAGAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAA
* * * * *
21099465 ATAGTAAAAGTTTAAACAAGTTCGGAAGTTCGTCCAAGAAGAAAGAGAGAAACAATTCTCATGTA
130 CTCGTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
21099530 AATAAGTTTTTAATTCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * *
21099553 CAAACTTATTTATAAATTGAAAAAACTGTTTAGACCAAATGATGCGA-TTCCCTGAGCATGGACA
1 AAAACTTGTTTACAAAATG-ACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATGGA-A
* * * * * * *
21099617 -GCTCAAAAAATTGCTCGATGGAATATAGATTGTCTTGAATACTTCAAGCAA-CAGAAGTTATAA
63 TGTTCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAA
* * * * *
21099680 AAGAACTCGTAAAAATTTTGATAAGTTCGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTC
125 AAGAACTCGT-AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
21099745 ACGTAAATAAATTTTTAATTCAAAGACC
189 ACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
21099773 AAAACTTGTTTACGAAATGACAAAC-AGTTTAGACCAAATAATGTGATTTTCGGAACTTGGAATG
1 AAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * ** * *
21099837 TTTA-AAAATTGCTCGAATGGACTTAATCGTCTTGAATACTTTAAGGAACGAAA-TTCATATAAG
65 TTCAGAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT-ATAAAAG
* * * * * * *
21099900 AACTCGTACAAGTTTAACAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAGAAAACAATTC-AAAG
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAG-AAACAATTCTCACG
* * * *
21099964 GAAGTAAGTTTCTAATCCAAAGACC
192 TAAATAAGTTTTTAATTCAAAGACC
* * * * * *
21099989 AAAACTTGTATGCAAAATGACAAAACTATTTATACCATATGATGCGATTTTCTGAGC-----ATG
1 AAAACTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * *
21100049 TTC-GAAAAGTTACGCGAAGGATTGGATCGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAA
65 TTCAGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC--AAAGTTATAAAA
* ** * * * * * *
21100113 GAACTCGT-AAAGTTTGACAAGTTCGAAAGTTTATCCATGAACCAAGGGAGAAATAGTTCTCAGG
127 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
*
21100177 T-AATAAGATTTTAATTCAAAGACC
192 TAAATAAGTTTTTAATTCAAAGACC
* *
21100201 AAAAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCC-AGCATGGAATT
1 -AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
** * *
21100265 TTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATTCGAAGTTACAAAAGA
65 TTCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* *
21100329 ACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
*
21100394 AATAAGTTTTTAATTCAAGGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * *
21100417 AAAACTTGTTTATAAATTGACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
21100482 TCAAAAAATTGCTCGATGGAATATAGATTGTCTTGAATACTTTAAGCAA-TAGAAGTTATAAAAA
66 TCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAG
* * * * *
21100546 AATTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACGT
128 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
*
21100611 AAATAAGTTTCTAATTCAAAGACC
193 AAATAAGTTTTTAATTCAAAGACC
* * * * * * *
21100635 AAAACTTGTTTACGAAGTGACAAACTGTTTACACCAAATAATGCGATTTCCCGATCGTGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
21100700 TTAAAAAATTGCTCGAATGGAATGAATCGTCTTGAATACTTTAAGGAACCAAATTTATATAAGAA
66 TCAGAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * *
21100765 CTCGTACAAGTTTAACAAGTGT-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGGA
130 CTCGTAAAAGTTTGACAAGT-TCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* * *
21100829 AGTAAGTTTCTAATCCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * * *
21100852 AAAACTTGTTTGCCAAATGACAAACTATTTATACCATAGGATGCGATTTCCTGAGCAT-G---GT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
21100913 TCAGAAAGTTGCGCGAAGGATTGGATCATCTTGAATACTTTAAGGATCCAAAGTTACAAATGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * *
21100978 TAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAGA-AAAGAGAGAAACAATTCTCACGTCA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAA
21101042 ATAAGTTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* **
21101064 AAAACTTGTTTACAAAATGACAAACTACTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * *
21101129 TCGGAAAATTTCTCTAAGGAATGGATCATGTTGAATACTTTAAGTAACTAAAGTTA-ACAAATAA
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATA-AAAGAA
* * * * *
21101193 CTCATAAAAGTTTGACAAGTTCGAAAGTTGGTCCAAGAACAAAGAGAGAAACAATTCGCACATAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
21101258 ATAAGTTTTTAATTCAAAGACC
195 ATAAGTTTTTAATTCAAAGACC
* * *
21101280 AAAACTTGTTTGCAAAATGACAAACTATTCAAACCAAATGATGCGATTTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21101345 TCGGAAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTGAGGATCCGAAGTTACAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
** * * *
21101410 TATTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21101475 TAAGTTTTTGATTCAAAAGACC
196 TAAGTTTTTAATTC-AAAGACC
* *
21101497 AAAACTTGTTTACAAAATGACAAACTACTAAGACCAAATGATGCGA-TTCCCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * * *
21101561 TC-GAAAAATTTCTCTATGGGATAGATCTTGTTGAATACTTTAAGGAACCGAAGTTAAAAAAATA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT-ATAAAAGA
21101625 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG-GAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
21101689 AATAAGTTTTTAATTCAAAGACC
194 AATAAGTTTTTAATTCAAAGACC
* * * * *
21101712 AAATCCTGTTTACAAATTGACAAACTGTTTAGACCAAATGATGCGA-TTCCTCGAGCATGGACTT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGA-AT
* * * * * * **
21101776 CTTGA-AAAATTGCTCGATGGAATATAGATCGTTTTGAATACTTTAAGCAACTGAAGTTATAAAA
64 GTTCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
** * *
21101840 GAACTCAAAAAAGTTTGACAAGTTC-GAGAGTTCGTCCAAGAAC-CAGAGAGAAATAATTCTCAC
127 GAACTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
* * *
21101903 GTAGATAAGTTTTTAATTCAGAGACT
191 GTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
21101929 AAAATTTGATTGCAAAATTACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * **
21101994 T-TGAAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAAGGATCTGAAGTTATAAAAGAA
66 TCAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* *
21102058 CTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGGGAAA-AATTCTCACGTAA
130 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
21102122 ATAAGTTTTTAATTCAAAAACC
195 ATAAGTTTTTAATTCAAAGACC
* * * * *
21102144 AAAACTTGTTTACAAATTCACAAACTGTTTAGACCAAATGATGC-AATTCCCAGAGCATGGACTG
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATGGAATG
* * * * *
21102208 CTC-GAGAAATTGCTCGATGGAACGTAGATCATCTTGAATACTTTAAGCAA-CAGAAGTTATAAA
65 TTCAGA-AAATTGCTCGAAGGAA--TGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAA
*
21102271 AGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAA-ACAAGAGCA-AAACAATTCTC
126 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACA-AAGAG-AGAAACAATTCTC
*
21102334 ACGTAAATAAGTTTTTAAATTCAAAGACT
189 ACGTAAATAAGTTTTT-AATTCAAAGACC
* * * * *
21102363 AAAACATGTTCACAAAATGACGAACTATTTAGACTAAATGATGCGATTTCCCGAGTATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * *** * *
21102428 TCAAAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAGGGAATTGAAGTTAAAAAATAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * *
21102493 TCGTAAAAGGTTGATAAGTTTGGAAGTTGGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* *
21102558 TGAGTTTTTAATTTAAAGACC
196 TAAGTTTTTAATTCAAAGACC
** * * ** *
21102579 AAAACTTGTTTATGAAATGACAAATTATTTAGACGAAATGATGCGATTTCTAGAGTATGGAATGT
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * ** * * *
21102644 TCGGAAAATTGCTCCAAGGAATGGATCACCTTGAATATTTTAAGGATCCGAAGTTATAAAAGAAC
66 TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
*
21102709 TAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
131 TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
21102774 TAAGTTTTTAATTCAAAGGCC
196 TAAGTTTTTAATTCAAAGACC
* * * * * * *
21102795 AAAACTTATTTATAAATTGACAAATTGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-
* * * *
21102860 TT-AAAAAATTGCTCGATGGAATATTGATCGTCTTGAATACTTTAAGCAA-CAGAAGTTATAAAA
65 TTCAGAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAA
* * *
21102923 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACG
127 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
21102988 TAAATAAGTTTTTAATTCAAAGACC
192 TAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
21103013 CAAACTTGTTTATAAATTGACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGC
1 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * *
21103078 TCA-AAAACTTGCTTGAATTTAATGAATCGTCTTGAATACTTTAAGGAACCAAA-TTATATAAGA
66 TCAGAAAA-TTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
21103141 ACTCGTACAAGTTTAACAAGTGCGAAAGTTTC-TCCAAGAACCAAGAGAGAAACAATTCTCA
129 ACTCGTAAAAGTTTGACAAGTTCGGAAG-TTCGTCCAAGAACAAAGAGAGAAACAATTCTCA
21103202 GGGAAGTTGA
Statistics
Matches: 11913, Mismatches: 2090, Indels: 1028
0.79 0.14 0.07
Matches are distributed among these distances:
193 2 0.00
194 8 0.00
195 8 0.00
196 8 0.00
197 5 0.00
198 12 0.00
199 6 0.00
200 2 0.00
201 7 0.00
202 9 0.00
203 6 0.00
204 7 0.00
205 2 0.00
207 2 0.00
209 6 0.00
210 1 0.00
211 18 0.00
212 404 0.03
213 236 0.02
214 640 0.05
215 1772 0.15
216 4470 0.38
217 1636 0.14
218 1136 0.10
219 851 0.07
220 240 0.02
221 49 0.00
222 1 0.00
223 3 0.00
224 8 0.00
225 11 0.00
226 14 0.00
227 15 0.00
228 16 0.00
229 23 0.00
230 11 0.00
231 2 0.00
232 9 0.00
233 1 0.00
234 9 0.00
235 18 0.00
236 19 0.00
237 18 0.00
238 13 0.00
239 4 0.00
240 15 0.00
241 7 0.00
242 13 0.00
243 9 0.00
244 9 0.00
245 11 0.00
246 8 0.00
247 1 0.00
248 5 0.00
249 7 0.00
250 1 0.00
252 3 0.00
254 5 0.00
255 10 0.00
256 3 0.00
257 11 0.00
258 27 0.00
259 12 0.00
260 17 0.00
261 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
TCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
TCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGACC
Found at i:21098435 original size:180 final size:180
Alignment explanation
Indices: 21098099--21098466 Score: 540
Period size: 180 Copynumber: 2.0 Consensus size: 180
21098089 CAAAATACTT
* * * * ***
21098099 AGACCAAATGATGCGATTTTTCGAGCATGGAAAGTTTGGAAAATTTCTCTAAGGAATGGATCTTG
1 AGACCAAATGATGCGATTTTTCGAGCATGGAAAGTTCGAAAAATTGCTCGAAGGAATGGATCGAC
* * * *** * *
21098164 TTGATACTTTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAGAAGTTCGAAAGTTCGT
66 TTGAAACTTTAAGGAACCGAAGTTAAAAAACAACTAGTAAAAAAGTGACAAGTTCGAAAGTTCAT
*
21098229 CCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAA
131 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
21098279 AGACCAAATGATGCGATTTTTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGAC
1 AGACCAAATGATGCGATTTTTCGAGCATGGAAAGTTCGAAAAATTGCTCGAAGGAATGGATCGAC
* *
21098344 TTGAAACTTTAAGGATCCGAAGTTATAAAACAACTAGTAAAAAAAGTGACAAGTTCGAAAGTTCA
66 TTGAAACTTTAAGGAACCGAAGTTAAAAAACAACTAGT-AAAAAAGTGACAAGTTCGAAAGTTCA
21098409 TCCAAGAACAAAGAGAGAAA-AATTCTCACGTAAATAAGTTTTTAATTCAA
130 TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
21098459 AGGCCAAA
1 AGACCAAA
21098467 ACTTGTTTAC
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
180 126 0.75
181 41 0.25
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.26
Consensus pattern (180 bp):
AGACCAAATGATGCGATTTTTCGAGCATGGAAAGTTCGAAAAATTGCTCGAAGGAATGGATCGAC
TTGAAACTTTAAGGAACCGAAGTTAAAAAACAACTAGTAAAAAAGTGACAAGTTCGAAAGTTCAT
CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
Found at i:21103698 original size:17 final size:17
Alignment explanation
Indices: 21103678--21103710 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21103668 TTTGAGGACT
21103678 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
21103695 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
21103711 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:21103988 original size:50 final size:51
Alignment explanation
Indices: 21103904--21104059 Score: 140
Period size: 50 Copynumber: 3.1 Consensus size: 51
21103894 TGACATCCAT
* * * *
21103904 TAACTCTCATGATCAGTT-AAGTTTGTATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAAAGTATGCATCATAAATAATGACATGCATTAAG
* ** *
21103955 TAACTTACATGTTAGTTAAA-TATGCATCATAAATCCT-ATCATGCATTATG
1 TAACTCACATGTTAGTTAAAGTATGCATCATAAATAATGA-CATGCATTAAG
* * * *
21104005 TAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAAGTATGCATCA-TAAAT-AATGACATGCATTAAG
21104057 TAA
1 TAA
21104060 TCCATTAGTT
Statistics
Matches: 83, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
49 1 0.01
50 46 0.55
51 19 0.23
52 17 0.20
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (51 bp):
TAACTCACATGTTAGTTAAAGTATGCATCATAAATAATGACATGCATTAAG
Found at i:21105296 original size:20 final size:20
Alignment explanation
Indices: 21105262--21105328 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
21105252 TGAAAAAGTG
*
21105262 AAAAAAATTCGAAAAAAAAGA
1 AAAAAAAATC-AAAAAAAAGA
* **
21105283 AAAAAAAATCAAAATATTGA
1 AAAAAAAATCAAAAAAAAGA
* *
21105303 AAAAAAAATCGAAAAGAAGA
1 AAAAAAAATCAAAAAAAAGA
21105323 AAAAAA
1 AAAAAA
21105329 TTGAGTATTA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 28 0.76
21 9 0.24
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.10
Consensus pattern (20 bp):
AAAAAAAATCAAAAAAAAGA
Found at i:21106362 original size:19 final size:18
Alignment explanation
Indices: 21106319--21106363 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
21106309 AGTGTGTGAG
*
21106319 AAAAGAGATCGAAATTGA
1 AAAAGAAATCGAAATTGA
21106337 AAAAGAAATCGAGAA-TGA
1 AAAAGAAATCGA-AATTGA
21106355 AGAAAGAAA
1 A-AAAGAAA
21106364 AGAAAGAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.62, C:0.04, G:0.22, T:0.11
Consensus pattern (18 bp):
AAAAGAAATCGAAATTGA
Found at i:21107773 original size:17 final size:17
Alignment explanation
Indices: 21107753--21107785 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21107743 TTTAAGGACT
21107753 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
21107770 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
21107786 TAAGTGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:21109383 original size:216 final size:213
Alignment explanation
Indices: 21109003--21109763 Score: 753
Period size: 216 Copynumber: 3.5 Consensus size: 213
21108993 CATATGATGC
* * * *
21109003 GAAACAATTCTCACGCAAATAAGTTTTTAATTCAAAAACTAAAACTTGTTTACGAAAA-GACAAA
1 GAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAA
* * * * * *
21109067 CTATTTATACCATATGATGCGATTTCCTGAGGATGGAATGTTTGGAAAATTGCTCGAAGAAATGA
65 CTATTTAAACCA-ATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAATAAATGA
* * * *
21109132 ATCGTCTCGAATACTTTAAGGATACGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA
129 ATCATCTTGAATACTTTAAGGA-ACAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAA
* *
21109197 AGTCCGTCCAAGAACAAAGAGA
193 AGTAC-TCCAAGAACCAAGAGA
*
21109219 GAAACAATTCCCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACTAAA
1 GAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC-AAA
* * * * * *
21109284 -AATTTAGACCGAAGGATGTGATTTCTC-GAGCATGGAATGGTCGAAAAATTGCACGAATAAATG
65 CTATTTAAACC-AATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGAATAAATG
* * *
21109347 GATCATCTTGAATACATTAAGGAACCAAAATTATAAAAGAACTCA-TAAAAGTTTGACAAGTTCG
128 AATCATCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCG
* *
21109411 AAAGTTCATCCATGAACCAAGAGA
191 AAAGTAC-TCCAAGAACCAAGAGA
** * * * **
21109435 GAAACAATTCTCACGTAAATAAGGTTTTAATTCAATGACCAAAACTTGTCTATAACTTGACAAAC
1 GAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * *
21109500 TGTTTAAACCAAATGATACAATTTCCAGAGCATGAAATTTTCGAAAAATTGCTCG-ATGGAAT-A
66 TATTTAAACC-AATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAT-AAATGA
* * * * * *
21109563 CATCATCTTAAATACTTTAAGAAACAGAAGTTATAAAAGAACTCGTGAAAGTTTAACAAGTTTGA
129 -ATCATCTTGAATACTTTAAGGAACA-AAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGA
*
21109628 AAGTTACTCCAAGAACCAAGATA
192 AAG-TACTCCAAGAACCAAGAGA
** * ** * ***
21109651 GAAACAATTCTCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAAC
1 GAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * *
21109716 CATTTAGACC-ATCAGATTCGATTTCCCGAGCATGTAATGTTCAGAAAA
66 TATTTAAACCAAT--GATGCGATTTCCAGAGCATGGAATGTTC-GAAAA
21109764 TAACTCGTAA
Statistics
Matches: 449, Mismatches: 80, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
214 2 0.00
215 13 0.03
216 421 0.94
217 13 0.03
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (213 bp):
GAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
TATTTAAACCAATGATGCGATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAATAAATGAAT
CATCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGT
ACTCCAAGAACCAAGAGA
Found at i:21109877 original size:163 final size:163
Alignment explanation
Indices: 21109597--21109927 Score: 389
Period size: 163 Copynumber: 2.0 Consensus size: 163
21109587 CAGAAGTTAT
* * * * * *
21109597 AAAAGAACTCGTGAAAGTTTAACAAGTTTGAAAGTTACTCCAAGAACCAAGATAGAAACAATTCT
1 AAAATAACTCGTAAAAGTTTAACAAGTTCGAAAGTTACTCCAACAACAAAGAGAGAAACAATTCT
** * ** * *** *
21109662 CATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACCATTTAGACCA
66 CACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACCAATTAGACCA
* *
21109727 TCA-GAT-TCGATTTCCCGAGCATGTAATGTTCAG
131 -AATGATGT-GATTTCCCGAGCATGGAATGTTCAG
* * * *
21109760 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTT-CGTCCAACAGCAAAGGGAGAAACAATTT
1 AAAATAACTCGTAAAAGTTTAACAAGTTCGAAAGTTAC-TCCAACAACAAAGAGAGAAACAATTC
* * *
21109824 TCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACC
65 TCACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACCAATTAGACC
21109889 AAATGATGTGATTTCCCGAGCATGGAATGTTCAG
130 AAATGATGTGATTTCCCGAGCATGGAATGTTCAG
21109923 AAAAT
1 AAAAT
21109928 TGCTCAAAGG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
162 2 0.01
163 137 0.98
164 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (163 bp):
AAAATAACTCGTAAAAGTTTAACAAGTTCGAAAGTTACTCCAACAACAAAGAGAGAAACAATTCT
CACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACCAATTAGACCA
AATGATGTGATTTCCCGAGCATGGAATGTTCAG
Found at i:21110094 original size:379 final size:379
Alignment explanation
Indices: 21109381--21110135 Score: 933
Period size: 379 Copynumber: 2.0 Consensus size: 379
21109371 CCAAAATTAT
** *
21109381 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAACAACAAAGAGAGAAACAATTCT
* * ** **
21109446 CACGTAAATAAGGTTTTAATTCAATGACCAAAACTTGTCTATAACTTGACAAACTGTTTAAACCA
66 CACGTAAATAAGGTTTTAATTCAAAGACCAAAACTTGTCTACAAAATGACAAACTAATTAAACCA
* * * *
21109511 AATGATACAATTTCCAGAGCATGAAATTTTCGAAAAATTGCTCGATGGAATACATCATCTTAAAT
131 AATGATACAATTTCCAGAGCATGAAATGTTCGAAAAATTGCTCAAAGGAATACACCATCTTAAAT
* * *
21109576 ACTTTAAGAAACAGAAGTTATAAAAGAACTCGTGAAAGTTTAACAAGTTTGAAAGTTACTCCAAG
196 ACTTTAAGAAACAGAAGTTATAAAAGAACTCCTAAAAGTTTAACAAGTTCGAAAGTTACTCCAAG
* * ** * * * *
21109641 AACCAAGATAGAAACAATTCTCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACAT
261 AACCAAAAGAGAAACAATTCTCATGCAAATAAATTTTTAATTCAAAGACTAAAACTTGTTTACAA
*** * *
21109706 TTTGACAAACCATTTAGACCATCA-GATTCGATTTCCCGAGCATGTAATGTTCAG
326 AAAGACAAACCATTTAGACCAT-ATGATGCGATTTCCCGAGCATGGAATGTTCAG
* * * * * *
21109760 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTTT
1 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAACAACAAAGAGAGAAACAATTCT
* * * *
21109825 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
66 CACGTAAATAAGGTTTTAATTCAAAGACCAAAACTTGTCTACAAAATGACAAACTAATTAAACCA
*** * * ** * *
21109890 AATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCAAAGGAATGGACCGTCTTGAA
131 AATGATACAATTTCCAGAGCATGAAATGTTCGA-AAAATTGCTCAAAGGAATACACCATCTTAAA
* * * *
21109954 TACTTTAAGGAAGC-GAAGTTATAAAAGAACTCCTAAAAGTTTGATAAGTTCGGAAGTT-CTTCC
195 TACTTTAA-GAAACAGAAGTTATAAAAGAACTCCTAAAAGTTTAACAAGTTCGAAAGTTAC-TCC
* *
21110017 ATGAACCAAAAGAGAAACAATTCTCATGCAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTA
258 AAGAACCAAAAGAGAAACAATTCTCATGCAAATAAATTTTTAATTCAAAGACTAAAACTTGTTTA
* * *
21110082 CAAAAAGACAAACTATTTATACCATATGATGCGATTTCCCGAGCGTGGAATGTT
323 CAAAAAGACAAACCATTTAGACCATATGATGCGATTTCCCGAGCATGGAATGTT
21110136 TGGAAAAATT
Statistics
Matches: 315, Mismatches: 57, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
378 3 0.01
379 308 0.98
380 4 0.01
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (379 bp):
AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAACAACAAAGAGAGAAACAATTCT
CACGTAAATAAGGTTTTAATTCAAAGACCAAAACTTGTCTACAAAATGACAAACTAATTAAACCA
AATGATACAATTTCCAGAGCATGAAATGTTCGAAAAATTGCTCAAAGGAATACACCATCTTAAAT
ACTTTAAGAAACAGAAGTTATAAAAGAACTCCTAAAAGTTTAACAAGTTCGAAAGTTACTCCAAG
AACCAAAAGAGAAACAATTCTCATGCAAATAAATTTTTAATTCAAAGACTAAAACTTGTTTACAA
AAAGACAAACCATTTAGACCATATGATGCGATTTCCCGAGCATGGAATGTTCAG
Found at i:21110732 original size:216 final size:216
Alignment explanation
Indices: 21109760--21118384 Score: 9518
Period size: 216 Copynumber: 40.0 Consensus size: 216
21109750 TAATGTTCAG
* * * * * *
21109760 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTTT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
21109825 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
21109890 AATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCAAAGGAATGGACCGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
*
21109954 TACTTTAAGGAAGCGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * * * *
21109976 AAAAGAACTCCTAAAAGTTTGATAAGTTCGGAAGTTCTTCCATGAACCAAAAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21110041 CATGCAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAAGACAAACTATTTATACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21110106 TATGATGCGATTTCCCGAGCGTGGAATGTTTGGAAAAATTGCTTGAAGAAATGAATCGTCTCGAA
131 AATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
21110171 TACTTTAAGGATA-CGAAGTTAT
195 TACTTTAAGGA-ACCGAAGTTAT
* ** *
21110193 AAAAGAACTAGTAAAAGTTTGACAAGTTC-AGAAGCCCGTCCAAGAACAAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
21110257 TCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * *
21110322 AAATGATG-GAATTTCCCGAGCATGGAATATTCGATAAATTGCTTGAAGGAATGGATCTTGTTGA
130 AAATGATGCG-ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
*
21110386 ATACTTTAAGGAACCGAAGTTAA
194 ATACTTTAAGGAACCGAAGTTAT
* * * * *
21110409 AAAATAACTCGT-----TTTGACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
21110469 CACGTAAATAAGTTTTCAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTAAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** *
21110534 AATGTTGTGATTTTTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21110599 ACTTTAAGGATCCGAAGTTAC
196 ACTTTAAGGAACCGAAGTTAT
* * * * *
21110620 AAAAGAACTAGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21110685 CACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGATTACAAAATGACAAACAATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
21110750 AAGGATGTGATTTCTCGAGCATGGAATGTTC-AGAAAATTGCACGAA-TAAAGGATCGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *
21110813 TACATTAAGGAACCAAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * *
21110835 AAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* ** * * * * *
21110900 CACGTAAATAAGGTTTTAATTCATTGACCAAAACTTGTCTACAAATTGTCAAACTGTTTAAACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * * * * * * ** *
21110965 AATGATGCAATTTCTAGAGCACGAAATTTTCGAAAAACTGCTCGATGGATTACATCATCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21111030 ACTTTAAGAAACAGAAGTTAT
196 ACTTTAAGGAACCGAAGTTAT
* * *
21111051 AAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTAC-TCCAAGAACCAAGATAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT-CGTCCAAGAACCAAGAGAGAAACAATTC
** * * ** * ***
21111115 TCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* ** * * * * *
21111180 ACCA-GATTTGATTTCTCGAGCTTGTAATGTTTGAAAAATTGCTTC-AAGGAATAGATCGTCTTG
130 A-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTG
*
21111243 AATACTTTAAGGAAGCGAAGTTAT
193 AATACTTTAAGGAACCGAAGTTAT
* * * * *
21111267 AAATA-AACGCGTAAAAGTTTAACAAGTGT-GGAAGTTCGTCCAAGAACCAAGAGATAAATAATT
1 AAA-AGAACTCGTAAAAGTTTGACAAGT-TCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * **
21111330 CTCATGTAAATAAGTTTTTAATTAAAAGACCAAAACTT-TGTTACAAAATGATGAACTATTTAGA
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGA
* * * *
21111394 CCAAATGATGCGATTTCCCGAGCGTGGAGTGTTTGGAAAATTGCTCGAAAGGAATGGATCGTCTT
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTT
* *
21111459 GAATAGTTTAAGGAACC-ATGGTTAT
192 GAATACTTTAAGGAACCGA-AGTTAT
* * ** * * *
21111484 ATAAGAAGTCGTACTAGTTTGACAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21111549 AACGGAAATACA-TTTTTAATTCAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACC
66 CACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * *
21111613 ATAGGATGCGAATTCCTGAGCATGG-CTAG---G-AAAATTGCACGAAGGAGTGGATCGTCTTGA
130 AAATGATGCGATTTCCCGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
* *** *
21111673 ATACGTTAAGGAAGAAAAAAGCTAT
194 ATACTTTAAGG-A-ACCGAAGTTAT
* * * *
21111698 AAAAGAACTCGTAAAAGTTTGA-AAGGTTTGAAAGTTCATCCATGAACC-A-AGAGAAACAAATC
1 AAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * * * * *
21111760 TCAGGTTAATAAGATTTTAATTCAAAGACCCAAACTAGTTTACAAATTGACAAACTGTTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * *
21111825 AAATGATGCGATTTCCCGAGCATGGACTATTCGGAAAATTGCTTGATGGAATAGATCTTCTTGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* **
21111890 TACTTTAAGCAATAGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* *
21111912 GAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
** * **
21111977 CACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTACAAAATGACAAAACAATTTAGAGA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC-AAACTATTTAGACC
* * * * * *
21112042 AAATGATACGATTTCTCGAGAATGGAACGTTCG-AAAATTGCTCGAAGGAATGGATCTTGTTGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *
21112106 TACTTTAAGGAACAGAAGTTAA
195 TACTTTAAGGAACCGAAGTTAT
* * * * * *
21112128 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTTT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
21112193 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* *** * *
21112258 AATGATGTGATTTCCCGAGCATGGAATGTTTTTAAAATTGCTCAAAGGAATGGACCGTCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
*
21112323 ACTTTAAGGAAGCGAAGTTAT
196 ACTTTAAGGAACCGAAGTTAT
* * * * *
21112344 AAAAGAACTCCTAAAAGTTTGATAAGTTCGGAAGTTCGTCCATGAACCAAGAGAGAAACTATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21112409 CATGCAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAAGACAAACTATTTATACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21112474 TATGATGCGATTTCTCGAGCATGGAATGTTTTGGTAAAATTGCTCGAAGAAATGAATCGTCTCGA
131 AATGATGCGATTTCCCGAGCATGGAATG--TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
21112539 ATACTTTAAGGATA-CGAAGTTAT
194 ATACTTTAAGGA-ACCGAAGTTAT
* * * * *
21112562 AAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTCCGTCCAAGAACAAAGAGAGAAAAAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21112627 CATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
21112692 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAACTTGTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
21112757 ACTTTAAGGAACCGAAGTTA-
196 ACTTTAAGGAACCGAAGTTAT
* * * *
21112777 AAATATAACTCGT-----TTTGACAAGTTCAAAAGTTTGTCGAAGAA-CAA-AGAGAAACAATTC
1 AAA-AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
21112835 TCACGTAAATAA-TTTTTCAATTCAAAGACCAAAACTTGTTAACAAAATGACAAACTATTAAGAC
65 TCACGTAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* *
21112899 CAAATGATGTGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTC-AAGGGAATGGATCGTCTTG
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA-GGAATGGATCGTCTTG
* *
21112963 AATACTTTAAGGATCCGAAGTTAC
193 AATACTTTAAGGAACCGAAGTTAT
* * ** *
21112987 AAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAAAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21113052 CACGTAAATAAGATTTTAGTTAAAAGACCAAAACTTGATTACAAAATGACAAACAATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * * *
21113117 AAGGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCACG-AGTAAAGGATCATCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21113181 ACATTAAGGAACCAAAGTTAT
196 ACTTTAAGGAACCGAAGTTAT
* * * *
21113202 AAAAGAAGTCGTAAAAGTTTGACATGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* ** * * * * *
21113267 CATC-TAAATAAGGTTTTAATTCATTGACCAAAACTTGTCTACAAATTGTCAAACTGTTTAAACC
66 CA-CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * * * ** *
21113331 AAATGATGCGATTTCCAGAGCACGAAATTTTCAAAAAACTACTCGATGGAATACATCATCTTGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *
21113396 TACTTTAAGAAACAGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * * *
21113418 AAAAAAACACGTGAAAGTTTGACAAGTTTGAAAGTTAC-TCCAAGAACCAAGATAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT-CGTCCAAGAACCAAGAGAGAAACAATTC
** * * ** * ***
21113482 TCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * *
21113547 ATCA-GATTCGATTTCCCGAGCATGTAATGTTTGAAAAATTGCTTGAAGGAATAGATCGTCTTGA
130 A-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
*
21113611 ATACTTTAAGGAAGCGAAGTTAT
194 ATACTTTAAGGAACCGAAGTTAT
* * * * * * * *
21113634 AAATGAACGCGTAAAATTTTAACAAGTGCGGAAGTTCGTCCAAGAACCAAGAGATAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21113699 CATGTAAATAAGTTTTTAATTAAAAGACCAAAACTT-TGTTACAAAAAGACGAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACC
** * * * *
21113763 AAATGATGCGATTTCTTGAGCATGGAGTGTTCGGAAAATTGCTCGAAAGGAATGAATCATCTTGA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTTGA
* * *
21113828 ATAGTTTAAGGAATCAAAGTTAT
194 ATACTTTAAGGAACCGAAGTTAT
* * ** * * *
21113851 ATAAGAAGTCGTACTAGTTTGACAAGTGCAAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21113916 AATGGAAATACA-TTTTTAATTCAAAGACCAAAATCTTGTTTGCAAAATGACAAACTATTTAGAC
66 CACGTAAATA-AGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGAC
** * ** * * * * *
21113980 CGTAGGATGCGATTTCTTGAGCATGG-CTAG---G-AAAATTGCACAAAAGAGTGGATCGTCTTG
129 CAAATGATGCGATTTCCCGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * *
21114040 AATACGTTAAGGAACCAAAAAGCTAT
193 AATACTTTAAGGAACC--GAAGTTAT
* * * * * * * *
21114066 AAAAGAACTCATAAAAGTTTGA-AAGGTTTGAAAGGTCATCCATGAATCAAGGGAGAAACAAATC
1 AAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * * * * * * *
21114130 TCAGGTTAATAAGATTTTAATTCAAAGACCCAAACTAGTTTACAAATTGACAAAATGTTTTAGGC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT-ATTTAGAC
* * * * *
21114195 CAAATGATGCGATTTCCCGAGCATGGACTATTCGAAAAATTGCTCGATGGAATAGATCTTCTTGA
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
* **
21114260 ATACTTTAAGCAATAGAAGTTAT
194 ATACTTTAAGGAACCGAAGTTAT
* * *
21114283 GAAAGAACTCGTAAAAGGTTGACAAGTTCGAAAGTTCATCCAAGAACC-A-AGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
** *
21114346 CACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTAC-AAATGACAAAC-ATTTAGAGCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
21114409 AATGATGCGATTTCCCGAGCATGGAACGTTCAAAAAATTGCTCG-AGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21114473 ACTTTAATGAACCGAAGTTAA
196 ACTTTAAGGAACCGAAGTTAT
* * * * * *
21114494 AAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAGCAAAGGGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
21114559 CACGTAAATAAGTTTTTTATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21114624 AATGATGTGATTTCTCGAGCATGGAAAGTTC-AGAAATTGCTCAAAGGAACGGACCGTCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21114688 ACTTTAAGGAAGCAAAGTTAT
196 ACTTTAAGGAACCGAAGTTAT
* * * *
21114709 -AAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCTTCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21114773 CACGCAAATAAG-TTTTAATTCAAAAACTAAAACTTGTTTACGAAAA-GACAAACTATTTATACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACC
* * * * * * *
21114836 ATATGATGCGATTTCCCGAGGATGGAATGTTTGGAAAATTGCTCGAAGAAATGAATCGTCTCGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
*
21114901 TACTGTAAGGATA-CGAAGTTAT
195 TACTTTAAGGA-ACCGAAGTTAT
* * * * *
21114923 AAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTCCGTCCAAGAACAAAGAGAGAAACAATTCC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21114988 CACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACTAAATGACTAAA-AATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC-AAACTATTTAGACC
* * * * * ** * ** *
21115052 GAAGGATGTGATTTCTCGAGCATGGAATGGTCGGGAAATTGCACGAATAAATGGATCATCTTGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * *
21115117 TACATTAAGGAAACAAAATTAT
195 TACTTTAAGGAACCGAAGTTAT
* * *
21115139 AAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * ** * *
21115204 CACGTAAATAAGGTTTTAATTCAATGACCAAAACTTGTCTATAACTTGACAAACTGTTTAAACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* *** * * * ** *
21115269 AATGATGCGATTTCCAGAGCACAAAATTTTCGAAAAACTGCTCGATGGAATACATCATCTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21115334 ACTTTAAGAAACAGAAGTTAT
196 ACTTTAAGGAACCGAAGTTAT
* * * *
21115355 AAAAGAACTCGTGAAAGTTTAACAAGTTTGAAAGTTAC-TCCAAGAACCAAGATAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT-CGTCCAAGAACCAAGAGAGAAACAATTC
** * * ** * *** *
21115419 TCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACCATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * ** * * * * *
21115484 ATCA-GATTCGATTTCCCGAGCATGTCATGTTTGAAAAATTGCTTGACGGAATAGATCGTCCTGA
130 A-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
* *
21115548 GTACTTTAAGGAAGCGAAGTTAT
194 ATACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
21115571 AAATGAACGCGTAAAAGTTTAACAAGTGCGGAAGTTCATCCAAGAACCAGGAGATAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * **
21115636 CATGTAAATAAGTTTTTAACTAAAAGACCAAAACTT-TGTTACAAAATGATGAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACC
* * * *
21115700 AAATGATGCGATTTCCCGAGCGTGGAGTGTTCGGAAAATTGCTCGAAAGGAATGAATCGTCTTGA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTTGA
* *
21115765 ATAGTTTAAGGAACC-ATGGTTAT
194 ATACTTTAAGGAACCGA-AGTTAT
** * ** * * * *
21115788 CTAAGAAGTCGTACTAGTTTGACAAGTGCGAAAGTTCATCTAAGAACCAAGAGAAAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21115853 AACGGAAATACGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGTCAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21115918 TAGGATGCGAATTCCTGAGCATGG-CTAG---G-AAAATTGCACGAAGGAGTGGATCGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* ** *
21115978 TACGTTAAGGAAGCAAAAAGCTAT
195 TACTTTAAGGAA-C-CGAAGTTAT
* * ** *
21116002 AAAAGAACTCGTAAAAGTTTGA-AAGGTTTGAAAGTTCATCCTTGAACCAAGAGAGAAACAAATC
1 AAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * * * * *
21116066 TCAGGTTAATAAGATTTTAAATCAAAGACCCAAACTAGTTTACAAATTGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * *
21116131 AAATGATGCGATTTCCCGAGCATGGACTATTCGAAAAATTGCTTGATGGAATAGATCATCTTGAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* **
21116196 TACTTTAAGCAATAGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * *
21116218 GAAAGAACTCGTAAAAGGTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
** * *
21116283 CACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTACAAAATGACAAACAATTTAGAGCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
21116348 AATGATGCGATTTCCCGAGCATGGAACGTTCAAAAAATTGGTCGAAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
*
21116413 ACTTTAAGGAACCGAAGTTAA
196 ACTTTAAGGAACCGAAGTTAT
* * * * * *
21116434 AAAATAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21116499 CATGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
21116564 AATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCAAAGGAATGGA-CTGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GTCTTGAA
*
21116628 TACTTTAAGGAAGCGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * *
21116650 AAAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCATCCATGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * * * *
21116715 CATGCAAATAGGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAAGACAAACTATCTATACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
21116780 TATGATGCGATTTCCCCAGCGTGGAATGTTTGGAAAATTGCTCAAAGGAATGGA-CTGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GTCTTGAA
*
21116844 TACTTTAAGGAAGCGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * ** *
21116866 AAAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAATAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
21116931 CAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGCTTAC-AAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * ** * * * *
21116995 AATGATGCAATTTCTCGCGCATGGAATGTTCGAAAAATTTCTCTTAGGAATGGGTCTTGTTGGAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21117060 ACTTTAAGGAATCGAAGTTAAA
196 ACTTTAAGGAACCGAAGTT-AT
* * * *
21117082 AAAATAACTCATAAAAAATTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG-GAAACAATTC
1 AAAAGAACTCGT-AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* ****
21117146 TCACGTAAATAAGTTTTTAATTCAAAAACCAAAACTT-TTTTTTGAATGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* ** * *
21117210 AAATGATGCAATTTTTCAAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTT-AA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *
21117274 AACTTTAAGGTACCGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
*
21117296 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21117361 CACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTTCAAAATCACATACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * **
21117426 AATGATGCGACTTCCC-A-AATTGGAAAGTTGGAAAAATTGCTCGAAAGGATTTAATCGTCTTGA
131 AATGATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTTGA
* * * *
21117489 ATACATAAAGGAACCAAATTTAT
194 ATACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
21117512 ATAAGAACACATACAAGTTTAACAAGTGCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21117577 CAGGTAAATAAGTTTTTAATTTAAAGACCAAAACTTTTTTACAAAATGACAAACTATTTAGGCCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
*
21117642 AATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCAAAGGAATGGATCGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
*
21117706 TACTTTAAGGAAGC-AGAGTTAT
195 TACTTTAAGGAACCGA-AGTTAT
* * * ** * * *
21117728 AAAAGAACTCGTAAAAGTTTGACAGGTTTGGAAGTTTATCCATGAACCAAGAGAAAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * * *
21117793 CACGTAAATAAGTTTTTAAATCAATGACTAAAACTTGTTTACAAAAAGACAAATTATTTATACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
21117858 TATGATGCGATTTCTCGAACTTGGAATGTTC-AGAAAATTGCTTGAAGGAATGGATCGTCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * *
21117922 TAATTTAAGGATCCAAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
* * * * *
21117944 AAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21118009 TACGTAAATAAGTTTTTAATGCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
21118074 AATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTTGAAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
21118139 ACTTTAAGGAA-TGAAAGTTAA
196 ACTTTAAGGAACCG-AAGTTAT
* * * *
21118160 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCCTCCAAGAACCAAGAGAGACACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
21118225 CACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTACAAAATCACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * * *
21118290 AATTATGCGATTTCCAGAGCATGGAATGTTC-AGAAAATTGCTCGTGGGAATCGATCTTCATGGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
*
21118354 TACTTTAAGGATCCGAAGTTAT
195 TACTTTAAGGAACCGAAGTTAT
*
21118376 AGAAGAACT
1 AAAAGAACT
21118385 AGTTGGACCA
Statistics
Matches: 7033, Mismatches: 1236, Indels: 280
0.82 0.14 0.03
Matches are distributed among these distances:
208 7 0.00
209 150 0.02
210 5 0.00
211 284 0.04
212 189 0.03
213 214 0.03
214 495 0.07
215 873 0.12
216 3715 0.53
217 780 0.11
218 285 0.04
219 36 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
ACTTTAAGGAACCGAAGTTAT
Found at i:21111328 original size:647 final size:647
Alignment explanation
Indices: 21109760--21118384 Score: 9306
Period size: 647 Copynumber: 13.3 Consensus size: 647
21109750 TAATGTTCAG
* * * * * * *
21109760 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTTT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* *
21109825 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
21109890 AATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCAAAGGAATGGACCGTCTTGAA
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGAA
* * * * * *
21109954 TACTTTAAGGAAGCGAAGTTATAAAAGAACTCCTAAAAGTTTGATAAGTTCGGAAGTTCTTCCAT
195 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * * *
21110019 GAACCAAAAGAGAAACAATTCTCATGCAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACA
260 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * * * **
21110084 AAAAGACAAACTATTTATACCATATGATGCGATTTCCCGAGCGTGGAATGTTTGGAAAAATTGCT
325 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-AAAATTGCT
* * * * *
21110149 TGAA-GAAATGAATCGTCTCGAATACTTTAAGGATA-CGAAGTTATAAAAGAACTAGTAAAAGTT
389 CGAAGGAAA-GGATCGTCTTGAATACTTTAAGGA-ACCAAAGTTATAAAAGAACTCGTAAAAGTT
** * * *
21110212 TGACAAGTTC-AGAAGCCCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTA
452 TGACAAGTTCGA-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
*
21110276 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATG-GAATTTCCCG
516 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG-ATTTCCCG
* * * * * * *
21110340 AGCATGGAATATTCGATAAATTGCTTGAAGGAATGGATCTTGTTGAATACTTTAAGGAACCGAAG
580 AGCATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACGAAG
*
21110405 TTAA
644 TTAT
* * * *
21110409 AAAATAACTCGT-----TTTGACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* *
21110469 CACGTAAATAAGTTTTCAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTAAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
21110534 AATGTTGTGATTTTTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * * *
21110599 ACTTTAAGGATCCGAAGTTACAAAAGAACTAGTAAAAGTTTGTCAAGTTCGGAAGTTCGTCCAAG
196 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* * * *
21110664 AACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGATTACAA
261 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * *
21110729 AATGACAAACAATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTCAGAAAATTGCACG
326 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCG
* *
21110794 AA-TAAAGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
391 AAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
21110858 AAGTTTGGAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTTAATTCA
456 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
** * * * * * * ** *
21110923 TTGACCAAAACTTGTCTACAAATTGTCAAACTGTTTAAACCAAATGATGCAATTTCTAGAGCACG
521 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * *
21110988 AAATTTTCGAAAAACTGCTCGATGGATTACATCATCTTGAATACTTTAA-GAAACAGAAGTTAT
586 GAATTTT-GAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAAC-GAAGTTAT
* * *
21111051 AAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTT-ACTCCAAGAACCAAGATAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTC
** * * ** * ***
21111115 TCATTTAAATAAATTTTTACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* ** * * * *
21111180 ACCA-GATTTGATTTCTCGAGCTTGTAATGTTTGAAAAATTGCTTC-AAGGAATAGATCGTCTTG
130 A-AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGC-TCAAAGGAATGGATCGTCTTG
* * * *
21111243 AATACTTTAAGGAAGCGAAGTTATAAATA-AACGCGTAAAAGTTTAACAAGTGT-GGAAGTTCGT
193 AATACTTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTGACAAGT-TCGAAAGTTCGT
* * * *
21111306 CCAAGAACCAAGAGATAAATAATTCTCATGTAAATAAGTTTTTAATTAAAAGACCAAAACTT-TG
256 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-
** * * * **
21111370 TTACAAAATGATGAACTATTTAGACCAAATGATGCGATTTCCCGAGCGTGGAGTGTTTGGAAAAT
320 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAAT
* * ** * * **
21111435 TGCTCGAAAGGAATGGATCGTCTTGAATAGTTTAAGGAACCATGGTTATATAAGAAGTCGTACTA
385 TGCTCG-AAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* * * ** *
21111500 GTTTGACAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCAAACGGAAATACA-TTT
449 GTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTT
* * * *
21111564 TTAATTCAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCATAGGATGCGAATTCC
513 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * * * **
21111629 TGAGCATGG---CTAGGAAAATTGCACGAAGGAGTGGATCGTCTTGAATACGTTAAGGAAGAAAA
578 CGAGCATGGAATTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGG-A-AACG
*
21111691 AAGCTAT
641 AAGTTAT
* * *
21111698 AAAAGAACTCGTAAAAGTTTGA-AAGGTTTGAAAGTTCATCCATGAACC-A-AGAGAAACAAATC
1 AAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * * * *
21111760 TCAGGTTAATAAGATTTTAATTCAAAGACCCAAACTAGTTTACAAATTGACAAACTGTTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * * * ** * * *
21111825 AAATGATGCGATTTCCCGAGCATGGACTATTCGGAAAATTGCTTGATGGAATAGATCTTCTTGAA
130 AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAA
* ** * *
21111890 TACTTTAAGCAATAGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA
195 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
**
21111955 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTACA
260 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* ** * * *
21112020 AAATGACAAAACAATTTAGAGAAAATGATACGATTTCTCGAGAATGGAACGTTC-GAAAATTGCT
325 AAATGAC-AAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCT
* * * * *
21112084 CGAAGGAATGGATCTTGTTGAATACTTTAAGGAA-CAGAAGTTAAAAAATAACTCGTAAAAGTTT
389 CGAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * *
21112148 GACAAGTTCGAAAGTTCGTCCAACAGCAAAGGGAGAAACAATTTTCACGTAAATAAGTTTTTAAT
453 GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * *
21112213 TTAAAGACCAAAACTTGTTTACAAAATGACAAACTAATTAGACCAAATGATGTGATTTCCCGAGC
518 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
** * * * *
21112278 ATGGAATGTTTTTAAAATTGCTCAAAGGAATGGACCGTCTTGAATACTTTAAGGAAGCGAAGTTA
583 ATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACGAAGTTA
21112343 T
647 T
* * * * * *
21112344 AAAAGAACTCCTAAAAGTTTGATAAGTTCGGAAGTTCGTCCATGAACCAAGAGAGAAACTATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21112409 CATGCAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAAGACAAACTATTTATACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21112474 TATGATGCGATTTCTCGAGCATGGAATGTTTTGGTAAAATTGCTCGAAGAAATGAATCGTCTCGA
131 AATGATGCGATTTCTCGAGCATGGAATG--TTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGA
* * *
21112539 ATACTTTAAGGATA-CGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTCCGTCC
194 ATACTTTAAGGA-ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* * * *
21112603 AAGAACAAAGAGAGAAAAAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
258 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* *
21112668 CAAAATGACAAACTGTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTG
323 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-AAAATTG
* * * * * *
21112732 CTCGAAGGAATGGAACTTGTTGAATACTTTAAGGAACCGAAGTTA-AAATATAACTCGT-----T
387 CTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAA-AGAACTCGTAAAAGT
* ** *
21112791 TTGACAAGTTCAAAAGTTTGTCGAAGAA-CAA-AGAGAAACAATTCTCACGTAAATAA-TTTTTC
451 TTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-
* * * *
21112853 AATTCAAAGACCAAAACTTGTTAACAAAATGACAAACTATTAAGACCAAATGATGTGATTTTCCG
515 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * **
21112918 AGCATGGAATGTTCGAAAAATTGCTC-AAGGGAATGGATCGTCTTGAATACTTTAAGGATCCGAA
580 AGCATGGAAT-TTTGAAAAATTGCTCGAA-GGAATAGATCGTCTTGAATACTTTAAGGAAACGAA
*
21112982 GTTAC
643 GTTAT
* * * ** *
21112987 AAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAAAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
21113052 CACGTAAATAAGATTTTAGTTAAAAGACCAAAACTTGATTACAAAATGACAAACAATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * * *
21113117 AAGGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCAC-GAGTAAAGGATCATCTTGAAT
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * * * *
21113181 ACATTAAGGAACCAAAGTTATAAAAGAAGTCGTAAAAGTTTGACATGTTCGAAAGTTCATCCATG
196 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* ** *
21113246 AACCAAGAGAGAAACAATTCTCATC-TAAATAAGGTTTTAATTCATTGACCAAAACTTGTCTACA
261 AACCAAGAGAGAAACAATTCTCA-CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * * * * * * * *
21113310 AATTGTCAAACTGTTTAAACCAAATGATGCGATTTC-CAGAGCACGAAATTTTCAAAAAACTACT
325 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAGAAAATTGCT
* * * * * * *
21113374 CGATGGAATA-CATCATCTTGAATACTTTAA-GAAACAGAAGTTATAAAAAAACACGTGAAAGTT
389 CGAAGGAA-AGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTT
* * ** *
21113437 TGACAAGTTTGAAAGTT-ACTCCAAGAACCAAGATAGAAACAATTCTCATTTAAATAAATTTTTA
452 TGACAAGTTCGAAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* ** * *** * *
21113501 CTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACTATTTAGACCATCA-GATTCGATTTCCCG
516 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCCCG
* * *
21113565 AGCATGTAATGTTTGAAAAATTGCTTGAAGGAATAGATCGTCTTGAATACTTTAAGGAAGCGAAG
580 AGCATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACGAAG
21113630 TTAT
644 TTAT
* * * * * * * * *
21113634 AAATGAACGCGTAAAATTTTAACAAGTGCGGAAGTTCGTCCAAGAACCAAGAGATAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21113699 CATGTAAATAAGTTTTTAATTAAAAGACCAAAACTT-TGTTACAAAAAGACGAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACC
* * * * *
21113763 AAATGATGCGATTTCTTGAGCATGGAGTGTTCGGAAAATTGCTCGAAAGGAATGAATCATCTTGA
130 AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCGTCTTGA
* * * * * ** * *
21113828 ATAGTTTAAGGAATCAAAGTTATATAAGAAGTCGTACTAGTTTGACAAGTGCAAAAGTTCGTCCA
194 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * * *
21113893 AGAACCAAGAGAAAAACAATTCTAATGGAAATACA-TTTTTAATTCAAAGACCAAAATCTTGTTT
259 AGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAA-CTTGTTT
* ** * * *
21113957 GCAAAATGACAAACTATTTAGACCGTAGGATGCGATTTCTTGAGCAT-G---GCT-AGGAAAATT
322 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA-GAAAATT
* * * ** * * *
21114017 GCACAAAAGAGTGGATCGTCTTGAATACGTTAAGGAACCAAAAAGCTATAAAAGAACTCATAAAA
386 GCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGAACC--AAAGTTATAAAAGAACTCGTAAAA
* * * * * * * * *
21114082 GTTTGA-AAGGTTTGAAAGGTCATCCATGAATCAAGGGAGAAACAAATCTCAGGTTAATAAGATT
449 GTTTGACAA-GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * *
21114146 TTAATTCAAAGACCCAAACTAGTTTACAAATTGACAAAATGTTTTAGGCCAAATGATGCGATTTC
513 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTC
* * * * *
21114211 CCGAGCATGGACTATTCGAAAAATTGCTCGATGGAATAGATCTTCTTGAATACTTTAAGCAATA-
577 CCGAGCATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAA-AC
21114275 GAAGTTAT
640 GAAGTTAT
* *
21114283 GAAAGAACTCGTAAAAGGTTGACAAGTTCGAAAGTTCATCCAAGAACC-A-AGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
** *
21114346 CACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTAC-AAATGACAAAC-ATTTAGAGCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
21114409 AATGATGCGATTTCCCGAGCATGGAACGTTCAAAAAATTGCTC-GAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * * *
21114473 ACTTTAATGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAC
196 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* * * * *
21114538 AGCAAAGGGAGAAACAATTCTCACGTAAATAAGTTTTTTATTTAAAGACCAAAACTTGTTTACAA
261 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * *
21114603 AATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAAGTTCAG-AAATTGCTCA
326 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCG
* * * *
21114667 AAGGAACGGACCGTCTTGAATACTTTAAGGAAGCAAAGTTAT-AAAGAACTCGTAAAAGTTTGAT
391 AAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
21114731 AAGTTCGGAAGTTCTTCCATGAACCAAGAGAGAAACAATTCTCACGCAAATAAG-TTTTAATTCA
456 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * *
21114795 AAAACTAAAACTTGTTTACGAAAA-GACAAACTATTTATACCATATGATGCGATTTCCCGAGGAT
521 AAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * * *
21114859 GGAATGTTTGGAAAATTGCTCGAAGAAAT-GAATCGTCTCGAATACTGTAAGGATACGAAGTTAT
585 GGAAT-TTTGAAAAATTGCTCGAAGGAATAG-ATCGTCTTGAATACTTTAAGGAAACGAAGTTAT
* * * * * *
21114923 AAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTCCGTCCAAGAACAAAGAGAGAAACAATTCC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * *
21114988 CACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTACTAAATGACTAAA-AATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC-AAACTATTTAGACC
* * * * ** * * ** *
21115052 GAAGGATGTGATTTCTCGAGCATGGAATGGTCGGGAAATTGCACGAATAAATGGATCATCTTGAA
130 AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAA
* * * * * * *
21115117 TACATTAAGGAAACAAAATTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAT
195 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
* * * *
21115182 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTTAATTCAATGACCAAAACTTGTCTATA
260 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
** * * *** * *
21115247 ACTTGACAAACTGTTTAAACCAAATGATGCGATTTC-CAGAGCACAAAATTTTC-GAAAAACTGC
325 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAG-AAAATTGC
* * * * *
21115310 TCGATGGAATA-CATCATCTTGAATACTTTAA-GAAACAGAAGTTATAAAAGAACTCGTGAAAGT
388 TCGAAGGAA-AGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGT
* * * ** *
21115373 TTAACAAGTTTGAAAGTT-ACTCCAAGAACCAAGATAGAAACAATTCTCATTTAAATAAATTTTT
451 TTGACAAGTTCGAAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * *** * * *
21115437 ACTTCAAAGATTAAAAGTTGTTTACATTTTGACAAACCATTTAGACCATCA-GATTCGATTTCCC
515 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCCC
** * * * * *
21115501 GAGCATGTCATGTTTGAAAAATTGCTTGACGGAATAGATCGTCCTGAGTACTTTAAGGAAGCGAA
579 GAGCATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACGAA
21115566 GTTAT
643 GTTAT
* * * * * * * *
21115571 AAATGAACGCGTAAAAGTTTAACAAGTGCGGAAGTTCATCCAAGAACCAGGAGATAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * **
21115636 CATGTAAATAAGTTTTTAACTAAAAGACCAAAACTT-TGTTACAAAATGATGAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACC
* * * * *
21115700 AAATGATGCGATTTCCCGAGCGTGGAGTGTTCGGAAAATTGCTCGAAAGGAATGAATCGTCTTGA
130 AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTC-AAAGGAATGGATCGTCTTGA
* * ** * ** * * *
21115765 ATAGTTTAAGGAACC-ATGGTTATCTAAGAAGTCGTACTAGTTTGACAAGTGCGAAAGTTCATCT
194 ATACTTTAAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* * * * *
21115829 AAGAACCAAGAGAAAAACAATTCTAACGGAAATACGTTTTTAATTCAAAGACCAAAACTTGTTTG
258 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * * *
21115894 CAAAATGTCAAACTATTTAGACCATAGGATGCGAATTC-CTGAGCAT-G---GCT-AGGAAAATT
323 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA-GAAAATT
* ** * * *
21115953 GCACGAAGGAGTGGATCGTCTTGAATACGTTAAGGAAGCAAAAAGCTATAAAAGAACTCGTAAAA
386 GCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGAA-C-CAAAGTTATAAAAGAACTCGTAAAA
* ** * * * *
21116018 GTTTGA-AAGGTTTGAAAGTTCATCCTTGAACCAAGAGAGAAACAAATCTCAGGTTAATAAGATT
449 GTTTGACAA-GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
21116082 TTAAATCAAAGACCCAAACTAGTTTACAAATTGACAAACTATTTAGACCAAATGATGCGATTTCC
513 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * *
21116147 CGAGCATGGACTATTCGAAAAATTGCTTGATGGAATAGATCATCTTGAATACTTTAAGCAATA-G
578 CGAGCATGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAA-ACG
21116211 AAGTTAT
641 AAGTTAT
* * *
21116218 GAAAGAACTCGTAAAAGGTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
** * *
21116283 CACGTAAATAAGTTTTTAATTCAAAGAATAAAACTTGTTTACAAAATGACAAACAATTTAGAGCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
21116348 AATGATGCGATTTCCCGAGCATGGAACGTTCAAAAAATTGGTCGAAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * *
21116413 ACTTTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAC
196 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* * * * *
21116478 AGCAAAGGGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAA
261 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * ** *
21116543 AATGACAAACTAATTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCA
326 AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCG
* * *
21116608 AAGGAATGGA-CTGTCTTGAATACTTTAAGGAAGCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
391 AAGGAAAGGATC-GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * *
21116672 TAAGTTCGGAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCATGCAAATAGGTTTTTAATTC
455 CAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * * *
21116737 AAAGACTAAAACTTGTTTACAAAAAGACAAACTATCTATACCATATGATGCGATTTCCCCAGCGT
520 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
21116802 GGAATGTTTGGAAAATTGCTCAAAGGAATGGA-CTGTCTTGAATACTTTAAGGAAGCGAAGTTAT
585 GGAAT-TTTGAAAAATTGCTCGAAGGAATAGATC-GTCTTGAATACTTTAAGGAAACGAAGTTAT
* * * ** *
21116866 AAAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCAAGAATAAAGAGAGAAATAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* *
21116931 CAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGCTTAC-AAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * ** * * * *
21116995 AATGATGCAATTTCTCGCGCATGGAATGTTCGAAAAATTTCTCTTAGGAATGGGTCTTGTTGGAT
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * * *
21117060 ACTTTAAGGAATCGAAGTTAAAAAAATAACTCATAAAAAATTTGACAAGTTCGAAAGTTCGTCCA
196 ACTTTAAGGAACCGAAGTT-ATAAAAGAACTCGT-AAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * **
21117125 AGAACAAAGAG-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACCAAAACTT-TTTTT
259 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
** * * * *
21117188 TGAATGACAAACTATTTAGACCAAATGATGCAATTTTTCAAGCATGGAATGTTCAAAAAATTGCT
324 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCT
* * * *
21117253 CGAAGGAATGGATCGTCTT-AAAACTTTAAGGTACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
389 CGAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* *
21117317 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAAATAAGTTTTTAATT
454 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * * * *
21117382 CAAAGACTAAAACTTTTTTTCAAAATCACATACTATTTAGACCAAATGATGCGACTTCCC-A-AA
519 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * * * * *
21117445 TTGGAAAGTTGGAAAAATTGCTCGAAAGGATTTA-ATCGTCTTGAATACATAAAGGAACCAAATT
584 -TGG-AATTTTGAAAAATTGCTCG-AAGGA-ATAGATCGTCTTGAATACTTTAAGGAAACGAAGT
21117509 TAT
645 TAT
* * * * * * * *
21117512 ATAAGAACACATACAAGTTTAACAAGTGCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
21117577 CAGGTAAATAAGTTTTTAATTTAAAGACCAAAACTTTTTTACAAAATGACAAACTATTTAGGCCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
*
21117642 AATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCAAAGGAATGGATCGTCTTGAA
131 AATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGAA
* * * * **
21117706 TACTTTAAGGAAGC-AGAGTTATAAAAGAACTCGTAAAAGTTTGACAGGTTTGGAAGTTTATCCA
195 TACTTTAAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * * * * *
21117770 TGAACCAAGAGAAAAATAATTCTCACGTAAATAAGTTTTTAAATCAATGACTAAAACTTGTTTAC
259 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * * * *
21117835 AAAAAGACAAATTATTTATACCATATGATGCGATTTCTCGAACTTGGAATGTTCAGAAAATTGCT
324 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCT
* * * * *
21117900 TGAAGGAATGGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTG
389 CGAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * *
21117965 ACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATG
454 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* *
21118030 CAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCGATTTCTCGAGCA
519 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * *
21118095 TGGAATGTTTGAAAAATTGCTTGAAGGAATGGATCTTGTTGAATACTTTAAGG-AATGAAAGTTA
584 TGGAAT-TTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACG-AAGTTA
*
21118159 A
647 T
* * * *
21118160 AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCCTCCAAGAACCAAGAGAGACACAATTCA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * *
21118225 CACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTACAAAATCACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* *** * * * *
21118290 AATTATGCGATTTC-CAGAGCATGGAATGTTC-AGAAAATTGCTCGTGGGAATCGATCTTCATGG
131 AATGATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGA
* *
21118353 ATACTTTAAGGATCCGAAGTTATAGAAGAACT
194 ATACTTTAAGGAACCGAAGTTATAAAAGAACT
21118385 AGTTGGACCA
Statistics
Matches: 6640, Mismatches: 1178, Indels: 317
0.82 0.14 0.04
Matches are distributed among these distances:
639 8 0.00
640 329 0.05
641 54 0.01
642 384 0.06
643 424 0.06
644 533 0.08
645 654 0.10
646 663 0.10
647 1432 0.22
648 1206 0.18
649 660 0.10
650 291 0.04
651 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (647 bp):
AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCG
AAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC
AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
GAATTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAAACGAAGTTAT
Found at i:21118862 original size:21 final size:21
Alignment explanation
Indices: 21118821--21118874 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
21118811 CTGCTTGATC
21118821 ACTTTCTTCTTT-TTCAATCTT
1 ACTTTCTT-TTTCTTCAATCTT
**
21118842 ACTTTCTTTTTCTTCTCTCTT
1 ACTTTCTTTTTCTTCAATCTT
* *
21118863 GCTCTCTTTTTC
1 ACTTTCTTTTTC
21118875 AATTTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.07, C:0.28, G:0.02, T:0.63
Consensus pattern (21 bp):
ACTTTCTTTTTCTTCAATCTT
Found at i:21118922 original size:18 final size:17
Alignment explanation
Indices: 21118901--21118934 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21118891 TCACAATTTC
21118901 TTTCAATCTCTCTTTCTT
1 TTTCAATCTCT-TTTCTT
*
21118919 TTTCATTCTCTTTTCT
1 TTTCAATCTCTTTTCT
21118935 CACAACTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTCAATCTCTTTTCTT
Found at i:21118943 original size:12 final size:13
Alignment explanation
Indices: 21118928--21118956 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21118918 TTTTCATTCT
21118928 CTTTTCTCACA-A
1 CTTTTCTCACACA
21118940 CTTTTCTCACACA
1 CTTTTCTCACACA
21118953 CTTT
1 CTTT
21118957 CTTTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (13 bp):
CTTTTCTCACACA
Found at i:21121337 original size:50 final size:50
Alignment explanation
Indices: 21121251--21121374 Score: 151
Period size: 50 Copynumber: 2.4 Consensus size: 50
21121241 TGCATGACTT
*
21121251 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATG-TCAG
* * * *
21121303 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
* *
21121353 TATTTATGATGCAAACTTAACT
1 GATTTATGATGCAAATTTAACT
21121375 GATCATGAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.02
50 48 0.76
51 9 0.14
52 5 0.08
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
Found at i:21124339 original size:13 final size:14
Alignment explanation
Indices: 21124305--21124357 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 14
21124295 TATCTCTTTT
*
21124305 TCTTCCTTTTCATC
1 TCTTTCTTTTCATC
*
21124319 TTTTTCTTTTC-TC
1 TCTTTCTTTTCATC
*
21124332 TCTTTCTTTTCACTT
1 TCTTTCTTTTCA-TC
21124347 TCTTTGCTTTT
1 TCTTT-CTTTT
21124358 TTCTCTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 12 0.38
14 9 0.28
15 6 0.19
16 5 0.16
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.68
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Found at i:21124398 original size:20 final size:19
Alignment explanation
Indices: 21124319--21124401 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 19
21124309 CCTTTTCATC
*
21124319 TTTTTC-TTTTC-TCTCTT
1 TTTTTCATTTTCTTTTCTT
* *
21124336 TCTTTTCACTTTCTTTGCTTT
1 T-TTTTCATTTTCTTTTC-TT
*
21124357 TTTCTCTCATTTTGCCTTTCTT
1 TTT-T-TCATTTT-CTTTTCTT
21124379 TTTTTCAATTTTCTTTTCTT
1 TTTTTC-ATTTTCTTTTCTT
21124399 TTT
1 TTT
21124402 CATTCTCACT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
17 1 0.02
18 5 0.10
19 4 0.08
20 16 0.31
21 10 0.20
22 11 0.22
23 4 0.08
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTCATTTTCTTTTCTT
Found at i:21126994 original size:12 final size:12
Alignment explanation
Indices: 21126977--21127001 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21126967 GAGAATTCTT
21126977 TATCTCTCTCAA
1 TATCTCTCTCAA
21126989 TATCTCTCTCAA
1 TATCTCTCTCAA
21127001 T
1 T
21127002 TCGAAAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (12 bp):
TATCTCTCTCAA
Found at i:21142103 original size:427 final size:422
Alignment explanation
Indices: 21141232--21142413 Score: 1275
Period size: 427 Copynumber: 2.8 Consensus size: 422
21141222 CAAAAAGCTG
** * * * *
21141232 TAAAAGAACTCGTAAAAG-TTGACAAGTTCAAAAGTTCATCCATGAACCAAGAGGGAAACAATTC
1 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * *
21141296 TCAAGTTAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAATTGACAAACTGTTTAGA-CA
66 TCAA-TAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAATGACAAACTATTTAGACCA
* * * * * * * * *
21141360 AATGATGTGA-TTCCCTGACCATGGACTGTACAAAAAATGATCGATGGAACATAGATAGTCTTGA
130 AATGAAGCGATTTCCC-GAACATGGAATGTTCGAAAAATGCTCGAAGGAAC--AGATCGTCTTGA
* *
21141424 ATACTTTAA-GAAACAGAAGTTATAAAAGAACTCG-AAAACGTTTTACAAGTTTGAAAGTTCGTC
192 ATACTTTAAGGAAA-A-AAGTTAT--AAGAACTCGTACAA-GTTTAACAAGTTTG-AAGTTCGTC
*
21141487 CATGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC--G--T
251 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* *
21141548 G---T------CTATTTAGACCAAATGATGCATTTCCCGAGTATGAAAAGTTCAGAAAATTACTC
316 GAAATGACAAACTATTTAGACCAAATGATGCATTTCCCGAGCATGAAAAGCTCAGAAAATTACTC
** * * *
21141604 GTGGGAATGGATCTTCTTGAATACTTTATGGAATCGAAGTTA
381 GAAGGAATGGATCGTCCTGAATACTTTAAGGAATCGAAGTTA
* * *
21141646 AAAAATAACTCGTAAAA-TGTTGACAAGTTCGGAAGTTCGTCCAAAAACAAAGAGAGAAACAATT
1 TAAAAGAACTCGTAAAAGT-TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
21141710 CTCATATAAATAAG-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
65 CTCA-ATAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGAC
* * * *
21141774 CAAATGAAGCGATTTCTCGAGCATGGAAAGTTCGAAAAATCGCTCGACGGAACAGATCGTCTTGA
128 CAAATGAAGCGATTTCCCGAACATGGAATGTTCGAAAAAT-GCTCGAAGGAACAGATCGTCTTGA
* *
21141839 ATACTTTAAGGAAAAAAGTTATAA-AACTCGTACAAGTTTGACAAGTTTAGAAGTTTGTCCAAGA
192 ATACTTTAAGGAAAAAAGTTATAAGAACTCGTACAAGTTTAACAAGTTT-GAAGTTCGTCCAAGA
* *
21141903 ACAAAGTGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAA
256 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT--GAA
* * *
21141968 ATGACAAACTATTTTGACCAAAAT-ATGCGATTTCCCGAGCATGGAATGCTC-GAAAAATTACTC
319 ATGACAAACTATTTAGACC-AAATGATGC-ATTTCCCGAGCATGAAAAGCTCAG-AAAATTACTC
*
21142031 GAAGGAATGGATCGTCCTGAATACTTTAAGG-ATCCGTAGTTA
381 GAAGGAATGGATCGTCCTGAATACTTTAAGGAAT-CGAAGTTA
* * * * *
21142073 TAAAAGAACTAGTAAAAGTTTGATAAGTTCGGAAGTTCGTCCGAGAACAGAGAGAGAAACAATTT
1 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * * *
21142138 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTAGTTTATGAAATGACAAACTATTTAGACC
66 TCA-ATAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTA-CAAATGACAAACTATTTAGACC
* ** * * * *
21142203 AAATG-ATCGATTTCCCGAATGTGGAATGTTCGGAAAATTTCTTGAAAGGAA-TGAATCGTCTTG
129 AAATGAAGCGATTTCCCGAACATGGAATGTTC-GAAAAATGCTCG-AAGGAACAG-ATCGTCTTG
* * ** **
21142266 CATGCTTTAAGGAACCAAATTTATATAAGAACTCGTACAAGTTTAACAAGTGCGGAAGTTCGTCC
191 AATACTTTAAGGAA--AAAAGT-TATAAGAACTCGTACAAGTTTAACAAGT-TTGAAGTTCGTCC
* * *
21142331 AAGAACCAAGAGAGAAACAATTCTCAAGGAAATAAGTTTTTAATTCAAAGACC-AAACTTGTTTG
252 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
21142395 TAAAATGACAAACTATTTA
317 --AAATGACAAACTATTTA
21142414 TGATACGAGT
Statistics
Matches: 649, Mismatches: 77, Indels: 67
0.82 0.10 0.08
Matches are distributed among these distances:
411 82 0.13
412 6 0.01
413 1 0.00
414 51 0.08
415 88 0.14
416 32 0.05
417 15 0.02
420 1 0.00
426 17 0.03
427 155 0.24
428 86 0.13
429 1 0.00
430 4 0.01
431 31 0.05
432 79 0.12
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (422 bp):
TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
TCAATAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAATGACAAACTATTTAGACCAA
ATGAAGCGATTTCCCGAACATGGAATGTTCGAAAAATGCTCGAAGGAACAGATCGTCTTGAATAC
TTTAAGGAAAAAAGTTATAAGAACTCGTACAAGTTTAACAAGTTTGAAGTTCGTCCAAGAACAAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAATGACAA
ACTATTTAGACCAAATGATGCATTTCCCGAGCATGAAAAGCTCAGAAAATTACTCGAAGGAATGG
ATCGTCCTGAATACTTTAAGGAATCGAAGTTA
Found at i:21142193 original size:216 final size:216
Alignment explanation
Indices: 21141550--21142413 Score: 1032
Period size: 216 Copynumber: 4.0 Consensus size: 216
21141540 CAAAACGTGT
* * **
21141550 CTATTTAGACCAAATGATGC-ATTTCCCGAGTATGAAAAGTTC-AGAAAATTACTCGTGGGAATG
1 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGA-AAAATTACTCGAAGGAATG
* * * * *
21141613 GATCTTCTTGAATACTTTATGGAAT-CGAAGTTAAAAAATAACTCGTAAAA-TGTTGACAAGTTC
65 GATCGTCTTGAATACTTTAAGG-ATCCAAAGTTATAAAAGAACTCGTAAAAGT-TTGACAAGTTC
* **
21141676 GGAAGTTCGTCCAAAAACAAAGAGAGAAACAATTCTCATATAAATAAG-TTTTAATTCAAAGACC
128 GGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
21141740 AAAACTTGTTTACAAAATGACAAA
193 AAAACTTGTTTACAAAATGACAAA
* * ** * **
21141764 CTATTTAGACCAAATGAAGCGATTTCTCGAGCATGGAAAGTTCGAAAAATCGCTCGACGGAACAG
1 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAATTACTCGAAGGAATGG
** * **
21141829 ATCGTCTTGAATACTTTAAGGA-AAAAAGTTAT--AA-AACTCGTACAAGTTTGACAAGTTTAGA
66 ATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * *
21141890 AGTTTGTCCAAGAACAAAGTGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAA
131 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
21141955 ACTTGTTTACGAAATGACAAA
196 ACTTGTTTACAAAATGACAAA
* * *
21141976 CTATTTTGACCAAAAT-ATGCGATTTCCCGAGCATGGAATGCTCGAAAAATTACTCGAAGGAATG
1 CTATTTAGACC-AAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAATTACTCGAAGGAATG
* ** * *
21142040 GATCGTCCTGAATACTTTAAGGATCCGTAGTTATAAAAGAACTAGTAAAAGTTTGATAAGTTCGG
65 GATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * *
21142105 AAGTTCGTCCGAGAACAGAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAA
130 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* **
21142170 AACTAGTTTATGAAATGACAAA
195 AACTTGTTTACAAAATGACAAA
*** * * * *
21142192 CTATTTAGACCAAATGAT-CGATTTCCCGAATGTGGAATGTTCGGAAAATTTCTTGAAAGGAATG
1 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAATTACTCG-AAGGAATG
* * * * * * * * *
21142256 AATCGTCTTGCATGCTTTAAGGAACCAAATTTATATAAGAACTCGTACAAGTTTAACAAGTGCGG
65 GATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * *
21142321 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGGAAATAAGTTTTTAATTCAAAGACC-A
130 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
**
21142385 AACTTGTTTGTAAAATGACAAA
195 AACTTGTTTACAAAATGACAAA
21142407 CTATTTA
1 CTATTTA
21142414 TGATACGAGT
Statistics
Matches: 554, Mismatches: 84, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
211 61 0.11
212 113 0.20
213 10 0.02
214 26 0.05
215 115 0.21
216 229 0.41
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (216 bp):
CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTTCGAAAAATTACTCGAAGGAATGG
ATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
ACTTGTTTACAAAATGACAAA
Found at i:21143591 original size:11 final size:12
Alignment explanation
Indices: 21143561--21143592 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
21143551 ACCTTGATCC
21143561 ATCAAAAAACAT
1 ATCAAAAAACAT
21143573 ATCAAAAAACAT
1 ATCAAAAAACAT
21143585 ATCAAAAA
1 ATCAAAAA
21143593 TTAGGAGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.69, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
ATCAAAAAACAT
Found at i:21144170 original size:18 final size:17
Alignment explanation
Indices: 21144140--21144179 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
21144130 AAAAGTGATA
21144140 AAAAAGTACAGAAAAAAG
1 AAAAAGTACAG-AAAAAG
21144158 AAAAA-TACGAGAAAAAG
1 AAAAAGTAC-AGAAAAAG
21144175 AAAAA
1 AAAAA
21144180 AATAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.75, C:0.05, G:0.15, T:0.05
Consensus pattern (17 bp):
AAAAAGTACAGAAAAAG
Found at i:21144180 original size:18 final size:17
Alignment explanation
Indices: 21144139--21144180 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
21144129 AAAAAGTGAT
21144139 AAAAAAGTACAGAAAAA
1 AAAAAAGTACAGAAAAA
21144156 AGAAAAA-TACGAGAAAAA
1 A-AAAAAGTAC-AGAAAAA
21144174 GAAAAAA
1 -AAAAAA
21144181 ATAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.18
18 17 0.77
19 1 0.05
ACGTcount: A:0.76, C:0.05, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAAAGTACAGAAAAA
Found at i:21147273 original size:216 final size:216
Alignment explanation
Indices: 21146868--21151289 Score: 5205
Period size: 216 Copynumber: 20.5 Consensus size: 216
21146858 TTTTTTCTTC
* * * * *
21146868 AAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGGAC--AGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21146931 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTATGTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * *
21146996 TAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGGAAAACTGCTC-TAAGCAATGGATCT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-AGGAATGGATCT
* *
21147060 TGTTGAATACTTTAAGAAACCG
195 TCTTGAATACTTTAAGGAACCG
* * * * *
21147082 AAGTTAAAAAATAATTTGCAAAAGTTTGACAAGTTCGGAAGTTCATCCATGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21147147 CAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACCAAATAACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * ** * *
21147212 TAGACCAAATTATGAGATTTCCCGAGAATAAAATGTTCAAAAAATTGCTCGTGGGAATGGATCTT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
21147277 CTTGAATACTTTAAGGAACCG
196 CTTGAATACTTTAAGGAACCG
* * * *
21147298 AAGTTAAAAAATAATTCGTAAAAGTTCGACAAGATCGGAAAG-TCGTCCAAGAA-TAA-AGAG--
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGG-AAGTTCGTCCAAGAACAAAGAGAGAA
* * *
21147358 ----TTCTCACGGAAAAAAGTTTATAATTCAAATG-CCAAAACTTGTTTACAAAATGACAAACTA
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAACTA
* * * * * *
21147418 TTTAGACCAAATGATGCGATTTCTCAAGTATGGAATGTTCGGAAAATTGCTCGAATGAATGGATC
129 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATC
** *
21147483 GACTTGAATACTTTAAGGAACCA
194 TTCTTGAATACTTTAAGGAACCG
* * * * *
21147506 AAGTTATAAAAGAAGTCGTAAAAGTTTGAC-GGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * * *
21147570 AAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTGACAAATTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * * * *
21147635 TAGACCAAATGATGAGATTCCCCGAGCACGGACTGCTCAAAAAATTGCTCG-ATGGAACATAGAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GG-A-ATGGAT
* * *
21147699 CGTCTTGAATACTTTAAGCAACAG
193 CTTCTTGAATACTTTAAGGAACCG
* * * *
21147723 AAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * *
21147788 TAATTCCCATGTAAAT-AGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATTACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* ** * ***
21147852 TAGACCAAATGATGTGATTT-CCGAGCATGGAATGTTCGAAAAATTGCTCAAAAGAATGGATAGA
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
* *
21147916 CTTGAATTCTTTAAGGAAGCG
196 CTTGAATACTTTAAGGAACCG
* * *** * * * * *
21147937 AAGTTATAATAGCTCTCCTAAAAGTTTGACTAGTTCAGAAGTTCGTCCATGAACCAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * * *
21148002 GAATTCTCACGTAAATAAGTTTTTATTTCAAAGACTAAAAGTTTTTTTATGAAAA-GACTAAAC-
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTA-CAAAATGAC-AAACT
* * * *
21148065 ATTTAGACCAAATGATGCGATTTCTCGAGTA-GGAAAATTTTAG-AAAATTGCTCG-AGGAAATG
128 ATTTAGACCAAATGATGCGATTTCCCGAGCATGG--AATGTTCGAAAAATTGCTCGTAGG-AATG
* *
21148127 GATCGTCATGAATACTTTAAGGAACCG
190 GATCTTCTTGAATACTTTAAGGAACCG
* * * * * * *
21148154 AAGTT-ATAAAGAACTCGTAAGAGTTTGACAAGTTCAGAACTTCGTCCAAGAACCAAGAGGGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* ** * *
21148218 CAATTCGCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAGGAATTGACAAACTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * ** * * * *
21148283 TAGACCAAATGATGCGATTCCCCGAGCATGGACTACTCGAAAAATTGCTC-AATGGAACGTATAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GGAATGGAT-C
* * **
21148347 TATCTTGAATACTGTAAGCAATAG
194 T-TCTTGAATACTTTAAGGAACCG
* * ** * **
21148371 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCATGAATGAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * *
21148436 AAATTCTTACGTAAATAAGTTTTTAATTCAAAGA-CTAAATTTGATTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * *
21148500 AAGACCGAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-GTAAGGAATGGATCT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-AGGAATGGATCT
* *
21148564 TGTTGAATACTTTAAGGAAGCG
195 TCTTGAATACTTTAAGGAACCG
* * * *
21148586 AAGTTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACAAAGAGAGAA
1 AAG-TTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAA
* * * * *
21148651 ATAATTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAACTTGATTACCAAATGACAAAATAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * *
21148716 TTTGACCAAATTATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTGCTCGT-GGAATGGATCT
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCT
21148780 TCTTGAATACTTTAAGGAACCG
195 TCTTGAATACTTTAAGGAACCG
*
21148802 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
*
21148867 CAATTCTCACGTAAA-AATGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
66 CAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * *
21148931 TTAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGGAAAATTACTC-TAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-AGGAATGGATC
*
21148995 TTCTTGAATACTTTAAGGAATCG
194 TTCTTGAATACTTTAAGGAACCG
* * * *
21149018 AAGTTAAAAAATAACTTGAAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGATAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * *
21149083 CAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAATACTTGTTTACAAAATGACAAACTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * * *
21149148 TAGACCAAATGATGCGATTCCCCGAGCATTGACTGCTCAAAAAATTGCTCG-ATGGAACATAGAT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GG-A-ATGGAT
* * **
21149212 CATCTTGAATACTTTAAGCAATAG
193 CTTCTTGAATACTTTAAGGAACCG
* * * *
21149236 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAGA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21149301 CAATTCTCACATAAATAAGTTTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* *
21149366 TAGACTAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-TAGGAATGGATCTT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
* *
21149430 GTTGAATACTTTAA-GAGACCA
196 CTTGAATACTTTAAGGA-ACCG
* * * *
21149451 AAGTTAAAAAATAACTTGTAAAAGTTTGACAACTTCGAAAGTTCGTCCATGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* *
21149516 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAGAACTTGTTTACCAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * *
21149581 TAGACCAAATTATGCGATTTCCCAAGCATGGAATTTTCGAAAAATTGCTCGTGGGAATGGATCTT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
* **
21149646 CTTGATTACTTTAAGGAATAG
196 CTTGAATACTTTAAGGAACCG
* ** *
21149667 AAGTTAAAAAATAACTCGTTAAAGTTTGACAAGTTCGGAAACTCATCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21149732 CAATTCTCACGAAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
21149797 TAGACCAAATGATGCGATTTCTCGAGTATGGAATGTTCGGAAAATTGCTCGAATGAATGGAT-TG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCT-
*
21149861 TCTTGAATACTTTAAGGAACCA
195 TCTTGAATACTTTAAGGAACCG
* *
21149883 AAGTTATAAAAA-AACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACAAAGAGAGAA
1 AAGTTA-AAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAA
* * ** *
21149947 ACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAGTTGACAAACTGT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * * * * *
21150012 TTAGACCAAAGGATGAGATTCCCCGAGCATGGACTGCTC-AAAAATTGATTG-ATGGAACATAGA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GG-A-ATGGA
** * *
21150075 TAGTCTTGAATACTTTAAGCAACAG
192 TCTTCTTGAATACTTTAAGGAACCG
* * * * *
21150100 AAGTTATAAAAGAACTCGTGAAAGGTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
21150165 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
21150230 TAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGAAAAATTTCTCG-ATGGAATGGATCG
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GGAATGGATCT
**
21150294 TCTTGAATACTTTAAGGAATGG
195 TCTTGAATACTTTAAGGAACCG
* * * ** *
21150316 AAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTTAAGAAGTTCGTCGAAGAACAAAGAGAGAAA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
** * * *
21150381 CAATTCTCATTTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTGACAAACTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
21150446 TAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTC-AAAGAATTGCTC-AATGGAACATAGA
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA-AATTGCTCGTA-GG-A-ATGGA
* * *
21150509 TCATCTTGAATACTTTAAGCAACAG
192 TCTTCTTGAATACTTTAAGGAACCG
* * * *
21150534 AAG-TAATAAAAGAACTCGTAAAAATTTGACAAGTTCGGAAGTTCGTCCAAGATCAAAGAGACAA
1 AAGTTAA-AAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAA
* * *
21150598 ACAAGTCTCACATAAATAAGTTTTTAATTCAAATACCAAAACTTGTTTACAAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * **
21150663 TTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTTGGGAAATTGCTC-TAAGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-AGGAATGGATC
* * *
21150727 TTGTTGAATTCTTTAAGGAACCA
194 TTCTTGAATACTTTAAGGAACCG
* * * * *
21150750 AAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAATAAAGAGAGAGA
1 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * *
21150815 CAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAAACTTGTTTACCAAATGACAAACAATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * * * *
21150880 TAGACCAAATTATGCGATTTGCCGAGCATGAAATGTTCGAGAAATAGCTTGTGGGAATGGATCTT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
*
21150945 CTTGAATACTTTAAGGAACTG
196 CTTGAATACTTTAAGGAACCG
* * * *
21150966 AAGTTTAAAAAATAACCCGTAAATGTTTGACAAGTTTGGAAGTTCGTCCAAG----AATAGAGAA
1 AAG-TTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAA
* * * *
21151027 ACAAATCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * * * * *
21151092 TTAGACCAAATGATGCGATCTCTCGAGTATGAAACGTTTGGAAAATTTCTCG-ATGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTA-GGAATGGATC
*
21151156 GTCTTGAATACTTTAAGGAA-CG
194 TTCTTGAATACTTTAAGGAACCG
* * * * *
21151178 AAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAA
1 -AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAG-A
* *
21151243 AACATTTCTCATGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTGTT
64 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
21151290 CCCAAGCATG
Statistics
Matches: 3589, Mismatches: 540, Indels: 156
0.84 0.13 0.04
Matches are distributed among these distances:
206 3 0.00
207 15 0.00
208 153 0.04
209 5 0.00
212 41 0.01
213 136 0.04
214 158 0.04
215 542 0.15
216 1422 0.40
217 599 0.17
218 513 0.14
219 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATGGATCTT
CTTGAATACTTTAAGGAACCG
Found at i:21148776 original size:865 final size:865
Alignment explanation
Indices: 21146868--21151289 Score: 5202
Period size: 865 Copynumber: 5.1 Consensus size: 865
21146858 TTTTTTCTTC
* * * * *
21146868 AAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGGAC--AGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21146931 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTATGTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
21146996 TAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGGAAAACTGCTC-TAAGCAATGGATCT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT--GGAATGGATCG
* * * * * * * *
21147060 TGTTGAATACTTTAAGAAACCGAAGTTAAAAAATAATTTGCAAAAGTTTGACAAGTTCGGAAGTT
194 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * *
21147125 CATCCATGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTT
259 CGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * * * * ** *
21147190 GTTTACCAAATAACAAACTATTTAGACCAAATTATGAGATTTCCCGAGAATAAAATGTTCAAAAA
324 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAA
* * * *
21147255 ATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAATAATTCGTAAA
389 ATTGCTCG-AGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAATAAAGAACTCGTAAA
* * * * * *
21147320 AGTTCGACAAGATCGGAAAG-TCGTCCAAGAA-TAA-AGAG------TTCTCACGGAAAAAAGTT
453 AGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
21147376 TATAATTCAAATG-CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
517 TTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * **
21147440 CTCAAGTATGGAATGTTCGGAAAATTGCTCGAAT-GAATGGAT-CGA-CTTGAATACTTTAAGGA
581 CCCGAGCATGGAATGTTCGAAAAATTGCTC-AATGGAACGTATATTATCTTGAATACTTTAAGGA
* *
21147502 ACCA-AAGTTATAAAAGAAGTCGTAAAAGTTTGAC-GGTTC-AGAAGTTCGTCCAAGAACAAAGA
645 A-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGA
* * * *
21147564 GAGAAAAAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTGACAA
708 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * * * * * * *
21147629 ATTGTTTAGACCAAATGATGAGATTCCCCGAGCACGGACTGCTCAAAAAATTGCTCG-ATGGAAC
773 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGG-A-
* * *
21147693 ATAGATCGTCTTGAATACTTTAAGCAACAG
836 ATGGATCGTCTTGAATACTTTAAGGAACCG
* * * *
21147723 AAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * *
21147788 TAATTCCCATGTAAAT-AGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATTACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* *** * *
21147852 TAGACCAAATGATGTGATTT-CCGAGCATGGAATGTTCGAAAAATTGCTCAAAAGAATGGATAGA
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-GTGGAATGGATCGT
* * * ** * *
21147916 CTTGAATTCTTTAAGGAAGCGAAGTTATAATAGCTCTCCTAAAAGTTTGACTAGTTCAGAAGTTC
195 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
* * * * * *
21147981 GTCCATGAACCAAGAGAGAAAGAATTCTCACGTAAATAAGTTTTTATTTCAAAGACTAAAAGTTT
260 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTT
* * * * *
21148046 TTTTATGAAAA-GACTAAAC-ATTTAGACCAAATGATGCGATTTCTCGAGTA-GGAAAAT-TTTA
324 GTTTA-CAAAATGAC-AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG--AATGTTCA
* *
21148107 GAAAATTGCTCGAGGAAATGGATCGTCATGAATACTTTAAGGAACCGAAGTT-ATAAAGAACTCG
385 GAAAATTGCTCGAGG-AATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAATAAAGAACTCG
* * * * *
21148171 TAAGAGTTTGACAAGTTCAGAACTTCGTCCAAGAACCAAGAGGGAAACAATTCGCACGTAAATAA
449 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
** * *
21148236 GTTTTTAATTCAAAGACCAAAACTTGTTTAGGAATTGACAAACTGTTTAGACCAAATGATGCGAT
514 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * ** * *
21148301 TCCCCGAGCATGGACTACTCGAAAAATTGCTCAATGGAACGTATATTATCTTGAATACTGTAAGC
579 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCAATGGAACGTATATTATCTTGAATACTTTAAGG
* * * **
21148366 AATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCATGAATGAAGAG
644 AACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * * * *
21148431 AGAAAAAATTCTTACGTAAATAAGTTTTTAATTCAAAGA-CTAAATTTGATTACAAAATGACAAA
709 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * *
21148495 CTATTAAGACCGAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCT-GTAAGGAATG
774 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGGAATG
* * *
21148559 GATCTTGTTGAATACTTTAAGGAAGCG
839 GATCGTCTTGAATACTTTAAGGAACCG
* * * *
21148586 AAGTTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACAAAGAGAGAA
1 AAG-TTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAA
* * * * *
21148651 ATAATTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAACTTGATTACCAAATGACAAAATAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * *
21148716 TTTGACCAAATTATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTGCTCGTGGAATGGATCTT
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTGGAATGGATCGT
* *
21148781 CTTGAATACTTTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
195 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
*
21148846 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA-AATGTTTATAATTCAAAGACCAAAACTT
260 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAACTT
* * * *
21148910 GTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGGAAA
324 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAA
* * * * * * *
21148975 ATTACTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAATCGAAGTTAAAAAATAACTTGAAAA
389 ATTGCTC-GAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAATAAAGAACTCGTAAA
* * * *
21149040 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGATAAACAATTCTCACGTAAAAAAGTTT
453 AGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
21149105 ATAATTCAAAGACCAATACTTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGCGATTCCC
518 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * * * * *
21149170 CGAGCATTGACTGCTCAAAAAATTGCTCGATGGAACATAGATCATCTTGAATACTTTAAGCAATA
583 CGAGCATGGAATGTTCGAAAAATTGCTCAATGGAACGTATATTATCTTGAATACTTTAAGGAACA
* * *
21149235 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAG
648 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAA
* * *
21149300 ACAATTCTCACATAAATAAGTTTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTAT
713 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* *
21149365 TTAGACTAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-T-AGGAATGGATC
778 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGGAATGGATC
* * *
21149428 TTGTTGAATACTTTAA-GAGACCA
843 GTCTTGAATACTTTAAGGA-ACCG
* * * *
21149451 AAGTTAAAAAATAACTTGTAAAAGTTTGACAACTTCGAAAGTTCGTCCATGAACAAAGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAA
* *
21149516 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAGAACTTGTTTACCAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * *
21149581 TAGACCAAATTATGCGATTTCCCAAGCATGGAATTTTCGAAAAATTGCTCGTGGGAATGGATCTT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-GGAATGGATCGT
* ** * * * * **
21149646 CTTGATTACTTTAAGGAATAGAAGTTAAAAAATAACTCGTTAAAGTTTGACAAGTTCGGAAACTC
195 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
* * * *
21149711 ATCCAAGAACAAAGAGAGAAACAATTCTCACGAAAAAAAGTTTATAATTCAAAGACCAAAACTTG
260 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
* * *
21149776 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGTATGGAATGTTCGGAAAA
325 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAA
* * *
21149841 TTGCTCGAATGAATGGAT-TGTCTTGAATACTTTAAGGAACCAAAGTT-ATAAAAAAACTCGTAA
390 TTGCTCG-AGGAATGGATCT-TCTTGAATACTTTAAGGAACCGAAGTTAAT-AAAGAACTCGTAA
* *
21149904 AAGTTTGACAAGTTCAGAAATTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTT
452 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** * * * *
21149969 TTTAATTCAAAGACCAAAATTTGTTTACAAGTTGACAAACTGTTTAGACCAAAGGATGAGATTCC
517 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * ** * * *
21150034 CCGAGCATGGACTGCTC-AAAAATTGATTGATGGAACATAGA-TAGTCTTGAATACTTTAAGCAA
582 CCGAGCATGGAATGTTCGAAAAATTGCTCAATGGAACGTATATTA-TCTTGAATACTTTAAGGAA
* * * *
21150097 CAGAAGTTATAAAAGAACTCGTGAAAGGTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAG
646 CAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
21150162 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
711 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * *
21150227 ATTTAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGAAAAATTTCTCG-ATGGAATGGA
776 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGGAATGGA
**
21150291 TCGTCTTGAATACTTTAAGGAATGG
841 TCGTCTTGAATACTTTAAGGAACCG
* * * *
21150316 AAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTT-AAGAAGTTCGTCGAAGAACAAAGAGAGAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAA
** * * *
21150380 ACAATTCTCATTTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTGACAAACTGT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * *
21150445 TTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTC-AAAGAATTGCTCAATGGAACATAGA
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA-AATTGCTC-GTGG-A-ATGGA
* * * * * *
21150509 TCATCTTGAATACTTTAAGCAACAGAAGTAATAAAAGAACTCGTAAAAATTTGACAAGTTCGGAA
191 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA
* * * * *
21150574 GTTCGTCCAAGATCAAAGAGACAAACAAGTCTCACATAAATAAGTTTTTAATTCAAATACCAAAA
256 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* **
21150639 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTTGG
321 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG
* * * * * * * *
21150704 GAAATTGCTCTAAGGAATGGATCTTGTTGAATTCTTTAAGGAACCAAAGTTAAAAAATAACTTGT
386 AAAATTGCTC-GAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAATAAAGAACTCGT
* * *
21150769 AAAAGTTTGACAAGTTC-GAAAGTTCGTCCATGAATAAAGAGAGAGACAATTCTCACGTAAATAA
450 AAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
21150833 GATTTTAATCCAAAGACCAAAACTTGTTTACCAAATGACAAACAATTTAGACCAAATTATGCGAT
514 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * ** * * *
21150898 TTGCCGAGCATGAAATGTTCGAGAAATAGCT-TGTGGGAATGGAT-CT-TCTTGAATACTTTAAG
579 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAT-GGAACGTATATTATCTTGAATACTTTAAG
* * * * * * * *
21150960 GAACTGAAGTTTAAAAAATAACCCGTAAATGTTTGACAAGTTTGGAAGTTCGTCCAAG----AAT
643 GAACAGAAG-TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAG
* * * *
21151021 AGAGAAACAAATCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGTATACAAAATGACA
707 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * * * *
21151086 AACTATTTAGACCAAATGATGCGATCTCTCGAGTATGAAACGTTTGGAAAATTTCTCG-ATGGAA
772 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGGAA
21151150 TGGATCGTCTTGAATACTTTAAGGAA-CG
837 TGGATCGTCTTGAATACTTTAAGGAACCG
* * *
21151178 AAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAA
1 -AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG-A
* *
21151243 AACATTTCTCATGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTGTT
64 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
21151290 CCCAAGCATG
Statistics
Matches: 3104, Mismatches: 398, Indels: 122
0.86 0.11 0.03
Matches are distributed among these distances:
854 2 0.00
855 228 0.07
856 146 0.05
857 35 0.01
862 5 0.00
863 352 0.11
864 580 0.19
865 1155 0.37
866 189 0.06
867 397 0.13
868 15 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (865 bp):
AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTGGAATGGATCGTC
TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAT
TGCTCGAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAATAAAGAACTCGTAAAAGT
TTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
GCATGGAATGTTCGAAAAATTGCTCAATGGAACGTATATTATCTTGAATACTTTAAGGAACAGAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGTAAGGAATGGATCGTC
TTGAATACTTTAAGGAACCG
Found at i:21148926 original size:649 final size:646
Alignment explanation
Indices: 21146868--21151289 Score: 5259
Period size: 649 Copynumber: 6.8 Consensus size: 646
21146858 TTTTTTCTTC
* * ** *
21146868 AAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGGAC--AGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * *
21146931 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTATGTACAAAATGACAAACTATT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * *
21146996 TAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGGAAAACTGCTCTAA-GCAATGGATCT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-AATGGAATGGATCT
* * ** * * *
21147060 TGTTGAATACTTTAAGAAACCGAAGTTAAAAAATAATTTGCAAAAGTTTGACAAGTTCGGAAGTT
195 TCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * *
21147125 CATCCATGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTT
260 CGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * * * * ** *
21147190 GTTTACCAAATAACAAACTATTTAGACCAAATTATGAGATTTCCCGAGAATAAAATGTTCAAAAA
325 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
** * *
21147255 ATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAAATAATTCGTAAA
390 ATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAA-CGAAGTTAAAAAAGAACTCGTAAA
* * * * *
21147320 AGTTCGACAAGATCGGAAAG-TCGTCCAAGAA-TAA-AGAG------TTCTCACGGAAAAAAGTT
454 AGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
21147376 TATAATTCAAATG-CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
518 TTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *
21147440 CTCAAGTATGGAATGTTCGGAAAATTGCTCGAAT-GAATGGATCGACTTGAATACTTTAAGGAAC
582 CCCGAGCATGGAATGTTCGAAAAATTGCTCG--TGGAATGGATCGTCTTGAATACTTTAAGGAAC
21147504 CA
645 CA
* * *
21147506 AAGTTATAAAAGAAGTCGTAAAAGTTTGAC-GGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
* * * * * *
21147570 AAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTGACAAATTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * * * * * * *
21147635 TAGACCAAATGATGAGATTCCCCGAGCACGGACTGCTCAAAAAATTGCTCGATGGAACATAGATC
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAATGG-A-ATGGATC
* * * * * * *
21147700 GTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGGAAGT
194 TTCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * *
21147765 TCGTCCAAGAACAAAGAGAGAAATAATTCCCATGTAAAT-AGTTTTTAATTCAAAGACCAAAACT
259 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
* * *
21147829 TGTTTACGAAATTACAAACTATTTAGACCAAATGATGTGATTT-CCGAGCATGGAATGTTCGAAA
324 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
* * *** * * * ** *
21147893 AATTGCTCAAAAGAATGGATAGACTTGAATTCTTTAAGGAAGCGAAGTTATAATAGCTCTCCTAA
389 AATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAA-CGAAGTTAAAAAAGAACTCGTAA
* * * *
21147958 AAGTTTGACTAGTTC-AGAAGTTCGTCCATGAACCAAGAGAGAAAGAATTCTCACGTAAATAAGT
453 AAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
21148022 TTTTATTTCAAAGACTAAAAGTTTTTTTATGAAAA-GACTAAAC-ATTTAGACCAAATGATGCGA
517 TTTTAATTCAAAGACCAAAA-CTTGTTTA-CAAAATGAC-AAACTATTTAGACCAAATGATGCGA
* * * * * *
21148085 TTTCTCGAGTA-GGAAAATTTTAG-AAAATTGCTCGAGGAAATGGATCGTCATGAATACTTTAAG
579 TTTCCCGAGCATGG--AATGTTCGAAAAATTGCTCGTGG-AATGGATCGTCTTGAATACTTTAAG
*
21148148 GAACCG
641 GAACCA
* * * * *
21148154 AAGTT-ATAAAGAACTCGTAAGAGTTTGACAAGTTCAGAACTTCGTCCAAGAACCAAGAGGGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
* ** * *
21148218 CAATTCGCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAGGAATTGACAAACTGTT
66 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * ** * * *
21148283 TAGACCAAATGATGCGATTCCCCGAGCATGGACTACTCGAAAAATTGCTCAATGGAACGTATATT
131 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAATGGAATGGAT-CT
* * * * **
21148348 ATCTTGAATACTGTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGT
195 -TCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* ** * * * *
21148413 TCGTCCATGAATGAAGAGAGAAAAAATTCTTACGTAAATAAGTTTTTAATTCAAAGA-CTAAATT
259 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
* * * *
21148477 TGATTACAAAATGACAAACTATTAAGACCGAATGATGCGATTTCCCAAGCATGGAATGTTCGAAA
324 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
* * *
21148542 AATTGCT-GTAAGGAATGGATCTTGTTGAATACTTTAAGGAAGCGAAGTTTAAAAAATAACTTGT
389 AATTGCTCG-AAGGAATGGATCTTCTTGAATACTTTAAGGAA-CGAAG-TTAAAAAAGAACTCGT
* * *
21148606 AAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACAAAGAGAGAAATAATTCTCACGTAAATAAG
451 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * *
21148671 TTTTTATTTCAAAGACCAAAACTTGATTACCAAATGACAAAATATTTTGACCAAATTATGCGATT
516 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
21148736 TCCTGAGCTTGGAATGTTCGAAAAATTGCTCGTGGAATGGATCTTCTTGAATACTTTAAGGAACC
581 TCCCGAGCATGGAATGTTCGAAAAATTGCTCGTGGAATGGATCGTCTTGAATACTTTAAGGAACC
*
21148801 G
646 A
*
21148802 AAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
*
21148867 CAATTCTCACGTAAA-AATGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
66 CAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * *
21148931 TTAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGGAAAATTACTCTAA-GGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-AATGGAATGGATC
* * *
21148995 TTCTTGAATACTTTAAGGAATCGAAGTTAAAAAATAACTTGAAAAAGTTTGACAAGTTCGGAAGT
194 TTCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * *
21149060 TCGTCCAAGAACTAAGAGATAAACAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAATACT
259 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
* * * * * *
21149125 TGTTTACAAAATGACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATTGACTGCTCAAAA
324 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
* * * * * *
21149190 AATTGCTCGATGGAACATAGATCATCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGT
389 AATTGCTCGAAGG-A-ATGGATCTTCTTGAATACTTTAAGGAA-CGAAGTTAAAAAAGAACTCGT
* * * *
21149255 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAGACAATTCTCACATAAATAAG
451 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
21149320 TTTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACTAAATGATGCAATT
516 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* *
21149385 TCCCGAGCATGGAATGTTCGAAAAATTGCTC-TAGGAATGGATCTTGTTGAATACTTTAA-GAGA
581 TCCCGAGCATGGAATGTTCGAAAAATTGCTCGT-GGAATGGATCGTCTTGAATACTTTAAGGA-A
21149448 CCA
644 CCA
* * * *
21149451 AAGTTAAAAAATAACTTGTAAAAGTTTGACAACTTC-GAAAGTTCGTCCATGAACAAAGAGAGAA
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAA
* *
21149515 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAGAACTTGTTTACCAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * *
21149580 TTAGACCAAATTATGCGATTTCCCAAGCATGGAATTTTCGAAAAATTGCTC-GTGGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAT-GGAATGGATC
* * **
21149644 TTCTTGATTACTTTAAGGAATAGAAGTTAAAAAATAACTCGTTAAAGTTTGACAAGTTCGGAAAC
194 TTCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * *
21149709 TCATCCAAGAACAAAGAGAGAAACAATTCTCACGAAAAAAAGTTTATAATTCAAAGACCAAAACT
259 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
* * *
21149774 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGTATGGAATGTTCGGAA
324 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
* *
21149839 AATTGCTCGAATGAATGGAT-TGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAA-AACTCGT
389 AATTGCTCGAAGGAATGGATCT-TCTTGAATACTTTAAGGAA-CGAAGTTA-AAAAAGAACTCGT
*
21149902 AAAAGTTTGACAAGTTCAGAAA-TTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAA
451 AAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
* ** * * *
21149966 GTTTTTAATTCAAAGACCAAAATTTGTTTACAAGTTGACAAACTGTTTAGACCAAAGGATGAGAT
515 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * * * *
21150031 TCCCCGAGCATGGACTGCTC-AAAAATTGATTGATGGAACATAGATAGTCTTGAATACTTTAAGC
580 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-TGG-A-ATGGATCGTCTTGAATACTTTAAGG
21150095 AA-CA
642 AACCA
* * * **
21150099 GAAGTTATAAAAGAACTCGTGAAAGGTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAA
1 -AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAA
21150164 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * * *
21150229 TTAGACCAAATGATGTGATTTCTCGAGTATGGAATGTTCGAAAAATTTCTCGATGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAATGGAATGGATCT
* * * * **
21150294 TCTTGAATACTTTAAGGAATGGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTTAAGAAGTT
195 TCTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* **
21150359 CGTCGAAGAACAAAGAGAGAAACAATTCTCATTTAAATAAGTTTTTAATTCAAAGACCAAAACTT
260 CGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * * * * *
21150424 GTTTACGAATTGACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTC-AAAG
325 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA-
* * *
21150488 AATTGCTC-AATGGAACATAGATCATCTTGAATACTTTAAGCAACAGAAG-TAATAAAAGAACTC
389 AATTGCTCGAA-GG-A-ATGGATCTTCTTGAATACTTTAAGGAAC-GAAGTTAA-AAAAGAACTC
* * * * * *
21150551 GTAAAAATTTGACAAGTTCGGAAGTTCGTCCAAGATCAAAGAGACAAACAAGTCTCACATAAATA
449 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
* *
21150616 AGTTTTTAATTCAAATACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGA
514 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* ** * * *
21150681 TTTCCCGAGCATGGAATGTTTGGGAAATTGCTC-TAAGGAATGGATCTTGTTGAATTCTTTAAGG
579 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGT--GGAATGGATCGTCTTGAATACTTTAAGG
21150745 AACCA
642 AACCA
* * * * *
21150750 AAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCATGAATAAAGAGAGAG
1 AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAA
* * * *
21150814 ACAATTCTCACGTAAATAAGATTTTAATCCAAAGACCAAAACTTGTTTACCAAATGACAAACAAT
65 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * * * **
21150879 TTAGACCAAATTATGCGATTTGCCGAGCATGAAATGTTCGAGAAATAGCT-TGTGGGAATGGATC
130 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAT-GGAATGGATC
* * *
21150943 TTCTTGAATACTTTAAGGAACT-GAAGTTTAAAAAATAACCCGTAAATGTTTGACAAGTTTGGAA
194 TTCTTGAATACTTTAAGGAA-TAGAAG-TTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * *
21151007 GTTCGTCCAAG----AATAGAGAAACAAATCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAA
257 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * * *
21151068 CTTGTATACAAAATGACAAACTATTTAGACCAAATGATGCGATCTCTCGAGTATGAAACGTTTGG
322 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * * *
21151133 AAAATTTCTCGATGGAATGGATCGTCTTGAATACTTTAAGGAACGAAAGTTATAAAAGAACTCAT
387 AAAATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACG-AAGTTAAAAAAGAACTCGT
* * *
21151198 AAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAAACATTTCTCATGTAAATAA
451 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG-AAACAATTCTCACGTAAATAA
21151263 GTTTTTAATTCAAAGA-CAAAACTTGTT
515 GTTTTTAATTCAAAGACCAAAACTTGTT
21151290 CCCAAGCATG
Statistics
Matches: 3230, Mismatches: 473, Indels: 155
0.84 0.12 0.04
Matches are distributed among these distances:
637 20 0.01
638 32 0.01
639 195 0.06
640 66 0.02
641 98 0.03
644 1 0.00
645 88 0.03
646 48 0.01
647 426 0.13
648 496 0.15
649 1202 0.37
650 345 0.11
651 204 0.06
652 9 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (646 bp):
AAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAATGGAATGGATCTT
CTTGAATACTTTAAGGAATAGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
TTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACGAAGTTAAAAAAGAACTCGTAAAAG
TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
AGCATGGAATGTTCGAAAAATTGCTCGTGGAATGGATCGTCTTGAATACTTTAAGGAACCA
Found at i:21151731 original size:216 final size:216
Alignment explanation
Indices: 21151288--21159047 Score: 8947
Period size: 216 Copynumber: 35.9 Consensus size: 216
21151278 ACAAAACTTG
* * * * * * * * * *
21151288 TTCCCAAGCATGGACTGCTCAAAAAATTGTTCGATGGAACATAGATGGTCTTCAATACTTTAAGC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGG
* * * * *
21151353 AACAGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTT-TAGAAGTTTGTCCAAAAACAAAGA
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGA
* ** *
21151417 GAGATACAATTCTCATTTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
21151482 ACTATTTAGACCAAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* * ** * * *
21151506 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCTAAGAAATGGATTTTGTTGAATAATTTAAGAAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21151571 CCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCATGAACGAAGAGAC
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * *
21151636 AAACAATTCTCATGTAAATAAGCTTTTAATTCAAAGACCAAAACTTGTTTACCAAATGACAAGCT
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
21151701 ATTTAGAACAAATTATGCAAT
196 ATTTAGACCAAATGATGCGAT
* ** *
21151722 TTCCCGAGCATGGAATGTTCGAAAAATAGCTCGTGGGAATGGATCTTCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
21151787 CCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACAAAGAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * *
21151852 AAACAATTCTCATGTAAACAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATAACAAACT
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
21151917 ATTTAGACCAAATGATGCGAT
196 ATTTAGACCAAATGATGCGAT
* * * * *
21151938 TTACCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATAGACTTGAATTCTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * * * * *
21152003 GCGAAGTTATAATAGATCTCCTAAAAGTTTGACTAGTTCGGATGTTCGTCCATGAACCAAGAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * * * * *
21152068 AAAGAATTCTCATGCAAATAAGTTTTCAATTCAAAGA--ATAAACGTT-TCATACGAAATGACTA
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAC-TTGT-TTACAAAATGACAA
* * *
21152130 ACCATTTACACGAAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* * * * *
21152154 TTCCCGAGCAGGGAAAGTT-TAAACAATTGGTCG-AGGAAATGGATCGTCATGAATACTTTAAGG
1 TTCCCGAGCATGGAATGTTCGAAA-AATTGCTCGAAGG-AATGGATCGTCTTGAATACTTTAAGG
* * * *
21152217 AACCGAAGTTATAAAAGAACTCGTAAGAGTTTGACAAGTTCGGAAGTTCGT-CAGAGAGCCAAGA
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA-AGAACAAAGA
* * * * ** *
21152281 GGGAAATAATTCACACGTAAATAAGTTTTTAATTCATAGACCAAAACTTGTTTATGAATTGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* *
21152346 ACTGTTTAGACCAAATGATACGAT
193 ACTATTTAGACCAAATGATGCGAT
* * * * * * * *
21152370 TCCCCGAGCATGGACTGCTCGAAAAATTGCTAGATAGAACATAGATCGTCTTGAATACTGTAAGC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGA-ATGGATCGTCTTGAATACTTTAAGG
* * * * *
21152435 AACAGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACGAAGAG
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * *
21152500 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAATTTGATTACAAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
*
21152565 CTATTAAGACCAAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * * * *
21152588 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCTAAGGAATGGACCTTGTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21152653 CCGTAGTTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAAAAAAGAGA
66 CCGAAG-TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
*
21152718 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACCAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * *
21152783 TATTTAAACCAAATTATGCTAT
195 TATTTAGACCAAATGATGCGAT
* ** * ** *
21152805 TTCCCTAGTTTGGAATGTTCAAAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* *
21152870 CCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
*
21152935 AAACAATTCTCACGTAAA-AATGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
131 AAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
21152999 TATTTAG-CCAAAATGATGCGAT
195 TATTTAGACC-AAATGATGCGAT
* * * * * *
21153021 TTCTCGAGTATGGAATGTTCGGAAAATTACTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21153086 CCGAAGTTAAAAAATAACCCGTAAAAGTTTGAGAAGTTCGGAAGTTCGTCCAAGAACAAAAAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * * *
21153151 AAACAATTCTCACTTAAAAAAGTTTATAATTCAAATACCAAAACTTGTTTACAAAAAGACAAACT
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
*
21153216 ATTTAGCCCAAATGATGCGAT
196 ATTTAGACCAAATGATGCGAT
* * * * * *
21153237 TTCTCGAGTATGGAATGTTCGGAAAATTACTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * * *
21153302 TCGAAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAAC-TA-AGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * *
21153365 AAACAATTCTCACATAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
*
21153430 GTTTAGACCAAATGATGCGAT
196 ATTTAGACCAAATGATGCGAT
* * * * * * **
21153451 TCCCCGAGCATGGACTGCTCAAAAAATTGCTCGATGGAACATAGATCGTCTTGAATACTTTAACC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGG
** * * *
21153516 AATAGAAGTTATAAAGGAACTCGTAAAAGTTTCACAAGTTCAGAAA-TTCGTCCGAGAACAAAGA
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGA
** *
21153580 GAGAAACAATTCTCATATAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
21153645 ACTATTTAGACCAAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* * * * * * *
21153669 TTCCCGAGCATGGAATGTTCGAAAAATTACTCTAAGGAATGGAACTTGTTGTATACTTTAAGAAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21153734 CCAAAGTTAAAAAAAAAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAAAAAAGAGA
66 CCGAAGTT-ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
* *
21153799 GAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACCAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
*
21153864 TATTTAGACCAAATTATGCGAT
195 TATTTAGACCAAATGATGCGAT
* * ** * *
21153886 TTCCGGAGCATGGAATGTCCGAAAAATTGCTCGTGGGAATGGATCTTCTTGATTACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21153951 CAGAAGTTAAAAAAGAACACGTTAAAGTTCGACAAGTTCGGAAAG-TCATCCAAGAACAAAGAGA
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAGA
* * * *
21154015 GAAACAATTCTTACGGAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
21154080 TATTTAGACCAAATGATGCGAT
195 TATTTAGACCAAATGATGCGAT
* * * *
21154102 TTCTCGAGTATGGAATGTTC-AGAAAATTGCTCGAATGAATGGATCGCCTTGAATACTTTAAGGA
1 TTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
21154166 ACCAAAGATATAAAAGAACTCGT-AAAGTTTGACAAGTTCAGAAA-TTCGTCCAAGAACAAAGAG
65 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACAAAGAG
* ****
21154229 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTATTTACGTGTTGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* **
21154294 CTGTTTAGACCAAATGATGAAAT
194 CTATTTAGACCAAATGATGCGAT
* * ** * * * * *
21154317 TCCCCGAGCATGGACTACTCAAAAAATTGCTCGATGGAACATAGATCATCTTGAATACTTTAAGC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGG
* * * *
21154382 AACAGAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAG
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
*
21154447 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACGAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
*
21154511 CTATTTAAACCAAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * * *
21154534 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGACTTGAATTCTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * ** * * * * * *
21154599 GCGAAGTTATAATAGCTCTCCTAAAAGTTTGACTAGTTCGGAAGTTCGTCCATGAACTAGGAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * * * * *
21154664 AAAGAATTCTCACGTAAATAAGTTATTAATTCAAAAACTAAAAGTTTTTTTACGAAATGACTAAA
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGAC-AAA
21154729 C-ATTTAGACCAAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * ** *
21154751 TTCCCGAGTA-GGAAAAGTTTAAAAAATTGCTCGAA-GAATTGGATCGTCATGAATACTTTAAGG
1 TTCCCGAGCATGG-AATGTTCGAAAAATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGG
* * *
21154814 AACCGAAGTTATAAAAGAACTCGTAAGAGTTTGACAAGTTC-AGAACTTCGTCCAAGAACCAAGA
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGA
* * * * ** *
21154878 GGGAAACAATACACACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTAGGAATTGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
*
21154943 ACTGTTTAGACCAAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* ** * * * *
21154967 TCCCCGAGCATGGGCTGCTCGAAAAATTGCTC-AATGGAACATAGATCGCCTTGAATACTGTAAG
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA-GG-A-ATGGATCGTCTTGAATACTTTAAG
* * * * * *
21155031 CAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCATGAATAAAGA
63 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGA
* * * * **
21155096 GAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAGACTAAAATTTGACTACAAAATGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
*
21155161 A--A--T----CGAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* * * *
21155177 TTCCCAAGCATGGAATGTTC-AGAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTT-AGGA
1 TTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * *
21155240 ACTGAAGTTTAAAAAATAACTTGTAAAAGTTTGACAAGTT-GAAAGTTCATCCATGAACAAAGAG
65 ACCGAAG-TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * * * * *
21155304 AGAAATAACTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACCAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
*
21155369 CTGTTTAGACCAAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * * * *
21155392 TTCTCGAGCAT-GAACTGCTCAAAAAATTGGTC-AATGGAACATAGATCGTCTTGAATACTTTAA
1 TTCCCGAGCATGGAA-TGTTCGAAAAATTGCTCGAA-GG-A-ATGGATCGTCTTGAATACTTTAA
* * * * * * *
21155455 GTAACAGAAGTTAT-AAAGAACTCGTGAAAGTTTGACAAGTTTGGAAGTTTGCCCAAGAACAAAG
62 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAG
* * * *
21155519 AGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTTACGAAATTACA
127 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
*
21155584 AACTATTTAAACCAAATGATGCGAT
192 AACTATTTAGACCAAATGATGCGAT
* * * *
21155609 TTCCCGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGACTTGAATTCTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * * * * *
21155674 GCAAAGTTATAATAGATCTCTTAAAAGTTTGACTAGTTCGGAAGTTCGTCCATGAACCAAGAGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * ** *
21155739 AAAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAATGTTTTTTTTACAAAATGACTAA
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA--ACTTGTTTACAAAATGAC-AA
21155804 AC-ATTTAGACCAAATGATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
* * * * * *
21155827 TTCCCGAGTA-GGAAAAGTT-TAGAAATTTGCTCGAAGAAATGGATCGTCCTGAATACTTTAAGG
1 TTCCCGAGCATGG-AATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * * *
21155890 AACCCTAGTTATAAAAGAACTCGTAAGAGTTTGACAAGTTCAAAACTTCGTCCAAGAACCAAGAG
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * * ** *
21155955 GGAAACAATTCACAAGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAGGAATTGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
*
21156020 CTGTTTAGACCAAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * * * * * * * *
21156043 TCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGAACATAGATCATCTTGAATGCTGTAAGC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGG
* * * * **
21156108 AACAGAAGTTAT-AAAGAACTCGTAAAAGTTTGAGAAGTTCAAAAGTTCGTCCATGAATGAAGAG
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * *
21156172 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAATTTGATTACAAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* *
21156237 CTATTAAGACCGAATGATGCGAT
194 CTATTTAGACCAAATGATGCGAT
* * * * * * *
21156260 TTTCCAAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTGTTGAATATTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21156325 CCGAAGTTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCAAAAGTTCATCCATGAACAAAGAGA
66 CCGAAG-TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
* * * *
21156390 GAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACTAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * *
21156455 TATTTTGACCAAATTATGCAAT
195 TATTTAGACCAAATGATGCGAT
** * ** * * *
21156477 TTCCCGAGTTTGGAATGTTCAAAAAATTGCTCGTGGGAATGGGTCCTCTTGAATACTTTAACGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
21156542 CCGAAGTTAAAAAATAATTCGTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACAAAGAGA
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGA
* * *
21156606 GAAATAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
*
21156671 TATTTAGCCCAAATGATGCGAT
195 TATTTAGACCAAATGATGCGAT
* * * * * *
21156693 TTCTCGAGTATGGAATGTTTG-AAAATTACTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
21156757 CCGAAGTTAAAAAATAACTCGTTAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC-TA-AGAG
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * *
21156820 AAACATTTCTCACGTAAAAAAGTTTATAATTCAAAGACTAAAACTTGTTTACAAAATGAC--ACT
131 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
21156883 ATTTAGACCAAATGATGCGAT
196 ATTTAGACCAAATGATGCGAT
* * * *
21156904 TTCTCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** * * * *
21156969 ATGAAGTTAAAAAATAACTCGTAAAAGTTTGA-AATGTTCGGAAGTTCATCCAAGAACAAAGAGA
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACAAAGAGA
*
21157033 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
*
21157098 TATTTAGACCATATGATGCGAT
195 TATTTAGACCAAATGATGCGAT
* **
21157120 TTCCCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGGT
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
21157185 CCCAAGTTATAAAAGAACTAGTAAAAGTTTAACAAAGTTCGAAAGTTCTTCCATGAACCAAGAGA
66 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
* * * *
21157250 GAAAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTACAAAATGACTAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
*
21157315 TATTTAGAGCAAATGATGCGAT
195 TATTTAGACCAAATGATGCGAT
* * * * *
21157337 TTCCCAAGCATGAAAAGTTC-AGAAAATTGCTCAGAA-GAATGGATCGTCATGAATGCTTTAAGG
1 TTCCCGAGCATGGAATGTTCGA-AAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * *
21157400 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGTCCAAGAATC-GAGA
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-CAAAGA
* * ** *
21157464 GAGAAACAATTCACACGTAAATAAGTTTTTAATTTAAAGACTTAAACTTTTTTACAAAATGACAA
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* *
21157529 ACTATTTAGACTAAATTATGCGAT
193 ACTATTTAGACCAAATGATGCGAT
*** * *
21157553 TTCCCGAATGTGGAATGTTCGAAAAATTGCTCGAAAGGAATGAATCGTATTGAATACTTTAAGGA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * * * *
21157618 ACCAAATTTATATAAGAACTTGTAAAAGTTTTAACAAGTGC-AGAAGTTTGTTCAAGAACCAAGA
65 ACCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGA
* * * * * *
21157682 GAGAAACAATTCTCAGGGAAATAAGTTTTTAATTCGAAGACCAAAACTTATTTGCAAAATGACAT
128 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * *
21157747 ACTATTTAGACCATAGGATGCGGT
193 ACTATTTAGACCAAATGATGCGAT
* * * * * * *
21157771 TTCCCAAGCAT-G---GTTC-AGAAAGTTACGCGAAGGATTGGATCGTCTTCAATACATTAAGGA
1 TTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * *
21157831 ACCAAAAAGTTGTAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGA
65 ACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGA
* * * *
21157896 GGGAAACAATTCTCAGGCT-AATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAATTGACA
128 GAGAAACAATTCTCACG-TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* *
21157960 AACTGTTTAGACCAAATGATGTGAT
192 AACTATTTAGACCAAATGATGCGAT
* * * ** * * * *
21157985 TCCCCGAGCTTGGACTACTC-AAAAATTGCTTGATGGAACATAGATCGTCTTGAATACTTTAAGC
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGG
** * * *
21158049 AACAAAAGTTATAAAAGAACTCGAAAAAGTTTTACAAGTTCGAAAGTTCGTCCATGAACAAAGAG
64 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
*
21158114 AGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGACCAAAACGTGTTTACAAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
*
21158178 CTATTTAGACCAAATGATACGAT
194 CTATTTAGACCAAATGATGCGAT
* ** * *
21158201 TTCCCGAGCATGGAAAGTTC-AGAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTATGGA
1 TTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * **
21158265 ACCGAAGTTA-AAAATTAACTCGTAAAATTTTGACAAGTTCGGAAGTTCGTCTAAGCGCAAAGAG
65 ACCGAAGTTATAAAA-GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * *
21158329 AGAAACAATTCTCACGTAAAAAAGTTTATAATTCAAAAACCAAAACTTGTTTACAAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* *
21158394 CTATTTAGACCAAATGAAGCAAT
194 CTATTTAGACCAAATGATGCGAT
* * * * ** *
21158417 TTCTCGAGCATGGAATGTTCGGAAAATTACTCGATGGAACAGATCATCTTGAATAC-TTAAGGAA
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** * * * *
21158481 CAAAAAGTTATAAAAGAACCCG-AAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACAAAGTGA
66 C-CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
* *
21158545 GAAACAATTCT-ATGTAAATAAGTTTTTAATTCTAAGACCAAAACTTGTTTACAAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* *
21158609 TGTTTAGACCAAATTATGCGAT
195 TATTTAGACCAAATGATGCGAT
* * * *
21158631 TTCCCGAGCATGGGAATGCTCG-AAAATTACTCGAAGGAATGGATCATCCTGAATACTTTAAGGA
1 TTCCCGAGCAT-GGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * *
21158695 TCCGAAGTTATAAAAGAACTAGTAAAAGTTTGGCAAGTTCTAAAGTTTGTCCGAGAACAAAGAGA
65 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGA
** *
21158760 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACAAGTTTACGAAATGACAAAC
130 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
*
21158825 TATTTAGACCAAATGATGTGAT
195 TATTTAGACCAAATGATGCGAT
*** * * * *
21158847 TTCCCGAATGTGGAATGTTCGAAAAATTTCTCGAAAGGAATGAATCTTCTTGAATACTTTAAGGG
1 TTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * * * * * *
21158912 ACCAAATTTCTATAAGAACTCATACAAGTTT-ATCAAGTGCGGAAGTTCATCCAAGAACCAAGAG
65 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCCAAGAACAAAGAG
* * **
21158976 AGAAACAATTCTCAAGGAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGTAAAATGACAAA
129 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
21159041 CTATTTA
194 CTATTTA
21159048 TGATACGAGT
Statistics
Matches: 6422, Mismatches: 995, Indels: 251
0.84 0.13 0.03
Matches are distributed among these distances:
207 86 0.01
208 45 0.01
209 2 0.00
210 39 0.01
211 48 0.01
212 89 0.01
213 92 0.01
214 427 0.07
215 703 0.11
216 2347 0.37
217 1640 0.26
218 873 0.14
219 31 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGAT
Found at i:21160769 original size:15 final size:16
Alignment explanation
Indices: 21160737--21160770 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
21160727 AAAGTACAAA
*
21160737 AAAAGAAAAATATGAG
1 AAAAGAAAAATATAAG
21160753 AAAAGAAAAA-ATAAG
1 AAAAGAAAAATATAAG
21160768 AAA
1 AAA
21160771 TATTCCGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (16 bp):
AAAAGAAAAATATAAG
Found at i:21166269 original size:216 final size:215
Alignment explanation
Indices: 21165768--21168073 Score: 2245
Period size: 216 Copynumber: 10.8 Consensus size: 215
21165758 AGTTGCGTGA
* * * *
21165768 AGGATTGGATCGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTGA
1 AGGAATGGATCGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * * *
21165833 CAAGTTCAAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCAGGTTAATAAG-ATTTAATTC
64 CAAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
21165897 AAATACCAAAACTTGTTTAC-AATTGACAAACTATTTAGACCAAATGATGCGATTCCCCGAGCAT
128 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * *
21165961 GG-ATGCCCAAAAAATTGCTC-A
193 GGAATGTTCGAAAAATTGCTCGT
* * ** *
21165982 ATGGAACATAGATCGTCTTGAATACTTTAAGTAACATAAGTTATAAAAGAACTCTTAAAAGTTTG
1 A-GG-A-ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
*
21166047 ACAAGTTCGAAAGTTCGTCCAAGAAATAAGAGAGAAACAATTCTCACGTAAGTAAGTTTTTAATT
63 ACAAGTTCGAAAGTTCGTCCAAGAAA-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
** * * * * *
21166112 CAAAGATTATAACTTATTTACAGAATTACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCA
127 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
21166177 TGGAATGTTCGAAAAATTGCTCGT
192 TGGAATGTTCGAAAAATTGCTCGT
* * * * * *
21166201 GGGAATGGATCTTCTTGAATACTTCAAGGAACCGAAGTTAAAAAATAACTTGTAAAAGTTTGACA
1 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * *
21166266 AGTTCGGAAGTTCATCCAAGAACAAAGAGA-AAATAATTCTCACGTAAA-ATGGTTTATAATTCA
66 AGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCA
* * * * *
21166329 AAGACCAAAACTTGCTTACAAAATGACAAAATATTTAGACCAAATGATGTGATTTCTCGAGCATA
129 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
*
21166394 GAATGTTCGAAAAATTGCTCGA
194 GAATGTTCGAAAAATTGCTCGT
* *
21166416 AGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
1 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * * *
21166481 AGTTCGGATGTTCGTCCAAGAACAAAGAGAGAAACAATACTCGCGTAAAAAAGTTTATAATTCAA
66 AGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
21166546 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG
130 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* *
21166611 AATGTTCGGAAAATTGCTCGA
195 AATGTTCGAAAAATTGCTCGT
* * * * * * * *
21166632 AGGAATGGATAGACTTGAATTCTTTAAGGAAGC-AAGTTAGAATAGAACTCCTAAAAGTTTGACT
1 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * *
21166696 AGTTCGGAAGTTAGTCCATGAACCAAGAGAGAAAGAATTCTCACGTAAATAA--TTTTAATTCAA
66 AGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * * * *
21166759 AAACTAAAAGTTTTTTTACAAAATGACTAACCATTTAGACCAAATGATACGATTTCCCGAGCA-G
130 AGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * *
21166823 GAAAAGTT-TAGAAAATTGCTCGA
194 G-AATGTTCGA-AAAATTGCTCGT
* * * *
21166846 AGAAATGGATCGTCATGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAGAGTTTGACA
1 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * *
21166911 AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCACATGTAAATAAGTTTTTAATTCAA
66 AGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * *
21166976 AGACCAAAACTTGTTTACGAATTAACAAACTGTTTAGACCAAATGATGCGA-GTCCCGGAGCATG
130 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATG
* *
21167040 GATTGCTCGAAAAATTGCTCG-
194 GAATGTTCGAAAAATTGCTCGT
* * * *
21167061 ATGGAACATAGATCGTCTTGAATACTGTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTG
1 A-GG-A-ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * *
21167126 ACAAGTTCAAAAGTTCGTCCATGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
63 ACAAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * * *
21167191 CAAAGACTAAAATTTGATTACAAAATGACAAACTATTAATACCAAATGATGCGATTTCCCAAGCA
127 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* *
21167256 TGGAATGTTCGGAAAATTGCT-TT
192 TGGAATGTTCGAAAAATTGCTCGT
* * * * *
21167279 AAAGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTTAAAAAATAACTCGT--AAGTTTGAC
1 -AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
21167342 AAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTGTCACGTAAAAAAGTTTATAATTCA
65 AAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * ** *
21167407 AAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGATCAAATGATGCGATTTCTTGAGTATG
129 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
*
21167472 GAATGTTCGGAAAATTGCTCG-
194 GAATGTTCGAAAAATTGCTCGT
* * *
21167493 ATGGAATGGATTGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAATTTG--
1 A-GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
*
21167556 -A---C--AAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCA
65 AAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * ** * *
21167615 AAGA-C-AAACTAT-TTAGACCAAATG--ATGCGATTT---CTCAAGT-ATG-GAATGTT--CG-
129 AAGACCAAAACT-TGTT-TACAAAATGACAAACTATTTAGAC-CAAATGATGCG-AT-TTCCCGA
* * * * *
21167667 G-A--AAATTGCTCGAATGAA-TGAATCAT
189 GCATGGAA-TGTTCGAA-AAATTG-CTCGT
** * * * * ** * * *
21167693 CTTGAAT--A-C-T-TTAAGGAACCGAATTTATA--AA-AGAACTCGTAAAAG--TTTG-ACAAG
1 -AGGAATGGATCGTCTT---GAA--TACTTTA-AGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * *
21167747 TTTG-GATGTTC----G----TCCAAGAACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTT
59 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
21167803 AATTCAAAGACCAAAACTTGTTTACGAAATGACAAACTATTTAGACCAAATTATGCAATTTCCCG
123 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * *
21167868 AGCATGAAATGCTCGAAAAGTTGCTC-T
188 AGCATGGAATGTTCGAAAAATTGCTCGT
* * * * *
21167895 AAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAC
1 -AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * *
21167960 GAGTTCGAAAGTTCGTCCAAAAACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
65 AAGTTCGAAAGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* *
21168025 AAGACCAAAACTTGTCTGCAAAATGACAAACTATTTAGACCAAATGATG
129 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
21168074 AAAAAGAGGA
Statistics
Matches: 1726, Mismatches: 277, Indels: 176
0.79 0.13 0.08
Matches are distributed among these distances:
194 52 0.03
195 18 0.01
196 10 0.01
197 8 0.00
198 23 0.01
199 13 0.01
200 17 0.01
201 5 0.00
202 16 0.01
203 12 0.01
204 22 0.01
205 9 0.01
206 10 0.01
207 19 0.01
208 60 0.03
210 1 0.00
212 1 0.00
213 21 0.01
214 278 0.16
215 408 0.24
216 432 0.25
217 91 0.05
218 195 0.11
219 5 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
AGTTCGAAAGTTCGTCCAAGAAAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
ATGTTCGAAAAATTGCTCGT
Found at i:21166931 original size:430 final size:431
Alignment explanation
Indices: 21165766--21168073 Score: 2694
Period size: 430 Copynumber: 5.4 Consensus size: 431
21165756 AAAGTTGCGT
* * * * *
21165766 GAAGGATTGGATCGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTT
1 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACC--GAAGTTAAAAAAGAACTCGTAAAAGTTT
* * * * * *
21165831 GACAAGTTCAAAAGTTCA-TCCATGAACCAAGAGAGAAACAATTCTCAGGTTAATAAGATTTAAT
64 GACAAGTTCGAAAGTT-AGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAT
* * *
21165895 TCAAATACCAAAACTTGTTTAC-AATTGACAAACTATTTAGACCAAATGATGCGATTCCCCGAGC
128 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
** * * * **
21165959 ATGG-ATGCCCAAAAAATTGCTC-AATGGAACATAGATCGTCTTGAATACTTTAAGTAACATAAG
193 ATGGAATGTTCAGAAAATTGCTCGAA--GAA-ATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*
21166022 TTATAAAAGAACTCTTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-ATAAGAGAGAAACA
255 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACA
* ** * * * *
21166086 ATTCTCACGTAAGTAAGTTTTTAATTCAAAGATTATAACTTATTTACAGAATTACAAACTATTTA
319 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* *
21166151 GACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
384 GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTC
** * * * *
21166199 GTGGGAATGGATCTTCTTGAATACTTCAAGGAACCGAAGTTAAAAAATAACTTGTAAAAGTTTGA
1 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGA
* * *
21166264 CAAGTTCGGAAGTTCA-TCCAAGAACAAAGAGA-AAATAATTCTCACGTAAA-ATGGTTTATAAT
66 CAAGTTCGAAAGTT-AGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA-AGTTT-TAAT
* * * *
21166326 TCAAAGACCAAAACTTGCTTACAAAATGACAAAATATTTAGACCAAATGATGTGATTTCTCGAGC
128 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * *
21166391 ATAGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTT
193 ATGGAATGTTCAG-AAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * * *
21166455 ATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACAAAGAGAGAAACAATA
257 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
* * *
21166520 CTCGCGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
322 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
*
21166585 CAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTC
387 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTC
* * * * * * *
21166630 GAAGGAATGGATAGACTTGAATTCTTTAAGGAAGC-AAGTTAGAATAGAACTCCTAAAAGTTTGA
1 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGA
* * * * *
21166694 CTAGTTCGGAAGTTAGTCCATGAACCAAGAGAGAAAGAATTCTCACGTAAATAA-TTTTAATTCA
66 CAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCA
* * * * * * *
21166758 AAAACTAAAAGTTTTTTTACAAAATGACTAACCATTTAGACCAAATGATACGATTTCCCGAGCA-
131 AAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * *
21166822 GGAAAAGTTTAGAAAATTGCTCGAAGAAATGGATCGTCATGAATACTTTAAGGAACCGAAGTTAT
195 GG-AATGTTCAGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * *
21166887 AAAAGAACTTGTAAGAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCA
259 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * * *
21166952 CATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTAACAAACTGTTTAGACCA
324 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
21167017 AATGATGCGA-GTCCCGGAGCATGGATTGCTCGAAAAATTGCTC
389 AATGATGCGATTTCCC-GAGCATGGAATGTTCGGAAAATTGCTC
* * * * * *
21167060 GATGGAACATAGATCGTCTTGAATACTGTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTT
1 GAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTT
* * * *
21167125 GACAAGTTCAAAAGTTCGTCCATGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
64 GACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAAT
* * * * * *
21167190 TCAAAGACTAAAATTTGATTACAAAATGACAAACTATTAATACCAAATGATGCGATTTCCCAAGC
128 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* ** * *
21167255 ATGGAATGTTCGGAAAATTGCTTTAA-AGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTT
193 ATGGAATGTTCAGAAAATTGCTCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
21167319 AAAAAATAACTCGT--AAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATT
257 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
* * * * *
21167382 GTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGAT
322 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
** *
21167447 CAAATGATGCGATTTCTTGAGTATGGAATGTTCGGAAAATTGCTC
387 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTC
* * * * *
21167492 GATGGAATGGATTGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAATTTGA
1 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGA
*
21167557 CAAGTTC--------GTCCAAGAACAAAGAGAGAAATAATTCTCACGTAAATAAG-TTT--TT--
66 CAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCA
* * *
21167609 --------AA-----TT-C-AAA-GACAAACTATTTAGACCAAATGATGCGATTTCTCAAGTATG
131 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * *
21167658 GAATGTTCGGAAAATTGCTCGAATG-AATGAATCATCTTGAATACTTTAAGGAACCGAATTTATA
196 GAATGTTCAGAAAATTGCTCGAA-GAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * * *
21167722 AAAGAACTCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAAAGAGAAACAATTCTC
260 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
21167787 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATGACAAACTATTTAGACCAA
325 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * *
21167852 ATTATGCAATTTCCCGAGCATGAAATGCTC-GAAAAGTTGCTC
390 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTC
* * * * *
21167894 TAAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
1 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGA
* * * *
21167959 CGAGTTCGAAAGTTCGTCCAAAAACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
66 CAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTC
* *
21168024 AAAGACCAAAACTTGTCTGCAAAATGACAAACTATTTAGACCAAATGATG
130 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
21168074 AAAAAGAGGA
Statistics
Matches: 1594, Mismatches: 224, Indels: 115
0.82 0.12 0.06
Matches are distributed among these distances:
400 102 0.06
401 8 0.01
402 197 0.12
403 2 0.00
408 2 0.00
410 37 0.02
412 3 0.00
414 2 0.00
418 2 0.00
420 3 0.00
422 37 0.02
424 2 0.00
429 22 0.01
430 383 0.24
431 312 0.20
432 231 0.14
433 120 0.08
434 108 0.07
435 21 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (431 bp):
GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGA
CAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCA
AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
GAATGTTCAGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTC
Found at i:21167161 original size:648 final size:639
Alignment explanation
Indices: 21165775--21168073 Score: 2725
Period size: 648 Copynumber: 3.6 Consensus size: 639
21165765 TGAAGGATTG
* * *
21165775 GATCGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
1 GATCGTCTTGAATACTTTAAGGAA-C-AGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * * *
21165840 AAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCAGGTTAATAAG-ATTTAATTCAAATACC
64 AAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
21165904 AAAACTTGTTTAC-AATTGACAAACTATTTAGACCAAATGATGCGATTCCCCGAGCATGG-ATGC
129 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGC
* ** * * ** *
21165967 CCAAAAAATTGCTC-AATGGAACATAGATCGTCTTGAATACTTTAAGTAACATAAGTTATAAAAG
194 TCGGAAAATTGCTCTAA-GG-A-ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAG
* *
21166031 AACTCTTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-ATAAGAGAGAAACAATTCTCACG
256 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACA-AAGAGAGAAACAATTCTCACG
* ** * * * *
21166095 TAAGTAAGTTTTTAATTCAAAGATTATAACTTATTTACAGAATTACAAACTATTTAGACCAAATG
320 TAAATAAG-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * ** *
21166160 ATGCAATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGTGGGAATGGATCTTCTTGAATACT
384 ATGCGATTTCCCGAGCATGGAATGTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * *
21166224 TCAAGGAACCGAAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAC
448 TTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTC-GAAGTTCATCCAAGAAC
* *
21166289 AAAGAGA-AAATAATTCTCACGTAAA-ATGGTTTATAATTCAAAGACCAAAACTTGCTTACAAAA
512 AAAGAGAGAAATAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTG-TTAC--AA
* * *
21166352 TGACAAAATATTTAGACCAAATGATGTGATTTCTCGAGCATAGAATGTTCGAAAAATTGCTCGAA
573 T-AC-AAAT-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAT
21166417 GGAAT
635 GGAAT
* * * *
21166422 GGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCG
1 -GATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * * * * *
21166487 GATGTTCGTCCAAGAACAAAGAGAGAAACAATACTCGCGTAAAAAAGTTTATAATTCAAAGACCA
65 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* *
21166552 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
130 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCT
* * * * * * *
21166617 CGGAAAATTGCTCGAAGGAATGGATAGACTTGAATTCTTTAAGGAAGC-AAGTTAGAATAGAACT
195 CGGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT
* * * * * *
21166681 CCTAAAAGTTTGACTAGTTCGGAAGTTAGTCCATGAACCAAGAGAGAAAGAATTCTCACGTAAAT
260 CGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
21166746 AA-TTTTAATTCAAAAACTAAAAGTTTTTTTACAAAATGACTAACCATTTAGACCAAATGATACG
325 AAGTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
21166810 ATTTCCCGAGCA-GGAAAAGTTTAGAAAATTGCTCGAAGAAATGGATCGTCATGAATACTTTAAG
389 ATTTCCCGAGCATGG-AATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
21166874 GAACCGAAGTTATAAAAGAACTTGTAAGAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGA
453 GAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCG-AAGTTCATCCAAGAACAAAGA
* * *
21166939 GAGAAACAATTCACATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAATTAACAA
517 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG-TTAC-AA-T-ACAA
* * * *
21167004 ACTGTTTAGACCAAATGATGCGA-GTCCCGGAGCATGGATTGCTCGAAAAATTGCTCGATGGAAC
578 A-T-TTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGCTCGATGG-A-
21167068 AT
638 AT
* *
21167070 AGATCGTCTTGAATACTGTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
1 -GATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * *
21167135 AAAGTTCGTCCATGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTA
65 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
21167200 AAATTTGATTACAAAATGACAAACTATTAATACCAAATGATGCGATTTCCCAAGCATGGAATGTT
130 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCT
* * * * *
21167265 CGGAAAATTGCTTTAAAGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTTAAAAAATAACT
195 CGGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACT
*
21167330 CGT--AAGTTTGACAAGTTCGAAAGTTCA-TCCAAGAACAAAGAGAGAAACAATTGTCACGTAAA
260 CGTAAAAGTTTGACAAGTTCGAAAGTT-AGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * *
21167392 AAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGATCAAATGATGC
324 TAAGTTT-TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
** * ** * * *
21167457 GATTTCTTGAGTATGGAATGTTCGGAAAATTGCTCGATGGAATGGATTGTCTTGAATATTTTAAG
388 GATTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
21167522 GAACCGAAGTTATAAAAGAACTCGTAAAAATTTGACAAGTTC---G----TCCAAGAACAAAGAG
453 GAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAGTTCATCCAAGAACAAAGAG
21167580 AGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C--AA------AC--T----A-TTT
518 AGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTACAATACAAATTTT
* * *
21167629 AGACCAAATGATGCGATTTCTCAAGTATGGAATGTTCGGAAAATTGCTCGAAT-GAAT
583 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCG-ATGGAAT
* * * **
21167686 GAATCATCTTGAATACTTTAAGGAACCGAATTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTG
1 G-ATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * *
21167751 GATGTTCGTCCAAGAACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
65 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
21167816 AAACTTGTTTACGAAATGACAAACTATTTAGACCAAATTATGCAATTTCCCGAGCATGAAATGCT
130 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCT
* * * *
21167881 C-GAAAAGTTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAAC
195 CGGAAAA-TTGCTCTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAAC
* * * *
21167945 TCGTAAAAGTTTGACGAGTTCGAAAGTTCGTCCAAAAACAAAAAGAGAAACAATTCTCACGTAAA
259 TCGTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* *
21168010 TAAGTTTTTAATTCAAAGACCAAAACTTGTCTGCAAAATGACAAACTATTTAGACCAAATGATG
324 TAAG-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
21168074 AAAAAGAGGA
Statistics
Matches: 1427, Mismatches: 195, Indels: 88
0.83 0.11 0.05
Matches are distributed among these distances:
615 6 0.00
616 231 0.16
617 1 0.00
618 151 0.11
619 8 0.01
621 1 0.00
626 1 0.00
630 2 0.00
637 2 0.00
639 1 0.00
640 50 0.04
644 21 0.01
645 151 0.11
646 240 0.17
647 104 0.07
648 407 0.29
649 48 0.03
650 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (639 bp):
GATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAA
AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTC
GGAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTC
GTAAAAGTTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
TTCCCGAGCATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
CCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAGTTCATCCAAGAACAAAGAGAGA
AATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTACAATACAAATTTTAGA
CCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGATGGAAT
Found at i:21169249 original size:18 final size:17
Alignment explanation
Indices: 21169222--21169257 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
21169212 ATTTTTATAG
21169222 AGAATATGAGAGAATAAA
1 AGAATATGAGAGAA-AAA
*
21169240 AGAATTTGAGAGAAAAA
1 AGAATATGAGAGAAAAA
21169257 A
1 A
21169258 TGAAATGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (17 bp):
AGAATATGAGAGAAAAA
Found at i:21175259 original size:29 final size:29
Alignment explanation
Indices: 21175227--21175286 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
21175217 AAATCATGTC
* *
21175227 ACAGATAAAGTTGCGGATGCAGACATGAT
1 ACAGATAAAGTTACAGATGCAGACATGAT
* * *
21175256 ACAGATACAGTTATAGATGCAGACGTGAT
1 ACAGATAAAGTTACAGATGCAGACATGAT
21175285 AC
1 AC
21175287 CCCCATCCGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (29 bp):
ACAGATAAAGTTACAGATGCAGACATGAT
Found at i:21176092 original size:57 final size:54
Alignment explanation
Indices: 21175914--21176210 Score: 257
Period size: 57 Copynumber: 5.4 Consensus size: 54
21175904 CACCTTAGCA
* * * *
21175914 TGTGTCAGCCCGTGTGCC-CCAGAATAGTATACACACACCCTAACGCATGCCT-G
1 TGTGCCAGCCCGTGTGCCTCCA-AATAGTATACACACACCCTGACACACGCCTCG
* * * *
21175967 TGTGCCAGCCCGTGTGCCTCAAAACAGTATACACATA-CCTGACACATGCCT-G
1 TGTGCCAGCCCGTGTGCCTCCAAATAGTATACACACACCCTGACACACGCCTCG
* * *
21176019 TATGCCAGCCCATGTGCCTCCAAATAGTATACACACACACCCTGACACACACTCTCG
1 TGTGCCAGCCCGTGTGCCTCCAAATAGTAT--ACACACACCCTGACACACGC-CTCG
* * *
21176076 TGTGTCAGCCCGTGTGCCTCTAAATAGTATGCACACACACCTTGACACACGCC-CG
1 TGTGCCAGCCCGTGTGCCTCCAAATAGTAT--ACACACACCCTGACACACGCCTCG
* * *
21176131 TATGCCAGCCCGTGTACCTCCTACAACTTATTTTAATGACACACACCCTGGACACA--CCTCG
1 TGTGCCAGCCCGTGTGCCTCC-A-AA--TA--GT-AT-ACACACACCCT-GACACACGCCTCG
21176192 TGTGCCAGCCCGTGTGCCT
1 TGTGCCAGCCCGTGTGCCT
21176211 TAGAACAATA
Statistics
Matches: 200, Mismatches: 29, Indels: 22
0.80 0.12 0.09
Matches are distributed among these distances:
52 39 0.19
53 30 0.15
54 8 0.04
55 29 0.14
56 4 0.02
57 48 0.24
59 2 0.01
60 2 0.01
61 30 0.15
62 8 0.04
ACGTcount: A:0.25, C:0.35, G:0.18, T:0.22
Consensus pattern (54 bp):
TGTGCCAGCCCGTGTGCCTCCAAATAGTATACACACACCCTGACACACGCCTCG
Found at i:21178768 original size:80 final size:80
Alignment explanation
Indices: 21178630--21178784 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 80
21178620 ATTCATAATT
* *
21178630 TCCGTCAATTCATGGCACCCGGTGCCTAGCGATTAAACAGCGATTAGTGAGCCCAGCTCTAGTTA
1 TCCGTCAATTCATGGCACCCAGTGCCTAGCGATTAAACAGCGATAAGTGAGCCCAGCTCTAGTTA
21178695 GATTAACCAACAAAG
66 GATTAACCAACAAAG
* * *
21178710 TCCGTCAATTCATGGCACCCATTGCCTAGCGGA-TAATCTA-CGATAAGTGAGCCTAGCTCTAGT
1 TCCGTCAATTCATGGCACCCAGTGCCTAGC-GATTAAAC-AGCGATAAGTGAGCCCAGCTCTAGT
*
21178773 TGGATTAACCAA
64 TAGATTAACCAA
21178785 TGGTTTGCGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 64 0.96
81 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (80 bp):
TCCGTCAATTCATGGCACCCAGTGCCTAGCGATTAAACAGCGATAAGTGAGCCCAGCTCTAGTTA
GATTAACCAACAAAG
Found at i:21187779 original size:37 final size:36
Alignment explanation
Indices: 21187738--21187831 Score: 86
Period size: 37 Copynumber: 2.6 Consensus size: 36
21187728 TTAATCCAGA
21187738 ATTGCACCCAAACATGTCACTGCATGAGCACTTCTAG
1 ATTGCACCCAAACATGTCAC-GCATGAGCACTTCTAG
* *
21187775 ATTGCGTCCAAAACTATCGT--CGCATGAGCACTTCTAG
1 ATTGC-ACCCAAAC-AT-GTCACGCATGAGCACTTCTAG
* *
21187812 ATTTCACACAAA-ACTGTCAC
1 ATTGCACCCAAACA-TGTCAC
21187832 CGCAAGAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
34 3 0.07
35 1 0.02
36 5 0.11
37 25 0.56
38 7 0.16
39 2 0.04
40 2 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (36 bp):
ATTGCACCCAAACATGTCACGCATGAGCACTTCTAG
Found at i:21187944 original size:37 final size:38
Alignment explanation
Indices: 21187838--21187948 Score: 97
Period size: 38 Copynumber: 3.0 Consensus size: 38
21187828 TCACCGCAAG
* *
21187838 AATATT-TTCAGAA-TGCACCCA-ATACTTTCGCTGCATA
1 AATATTCTTCA-AATTGCACCCAGA-ACTATCACTGCATA
* *
21187875 AATATTCTTCAAATTGCATCTAGAACTATCACTGCATA
1 AATATTCTTCAAATTGCACCCAGAACTATCACTGCATA
* * *
21187913 AGTATTTTTC-AATTGCACCCAGGAA-TGTCACTGCAT
1 AATATTCTTCAAATTGCACCCA-GAACTATCACTGCAT
21187949 GAACATGTAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
37 27 0.44
38 33 0.54
39 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (38 bp):
AATATTCTTCAAATTGCACCCAGAACTATCACTGCATA
Found at i:21192010 original size:3 final size:3
Alignment explanation
Indices: 21192002--21192052 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
21191992 GAGGAGTGTA
21192002 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21192050 AAT
1 AAT
21192053 TAAGAAGTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21192454 original size:13 final size:11
Alignment explanation
Indices: 21192422--21192469 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
21192412 TAATTAATGA
*
21192422 ATTATTATTTT
1 ATTAATATTTT
21192433 ATTAATATTTT
1 ATTAATATTTT
21192444 ACTTAA-ATATTT
1 A-TTAATAT-TTT
*
21192456 ATTATTATTTT
1 ATTAATATTTT
21192467 ATT
1 ATT
21192470 TAGAAAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:21194185 original size:4 final size:4
Alignment explanation
Indices: 21194176--21194200 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
21194166 TTAGGTAATG
21194176 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
21194201 GTGTGGAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:21198404 original size:49 final size:49
Alignment explanation
Indices: 21198282--21198421 Score: 169
Period size: 48 Copynumber: 2.9 Consensus size: 49
21198272 ATCATTTTTC
* * ** *
21198282 GACAAGCCATCATATAGA-TACCGATGAACAACCACATAA-CACATCATG
1 GACAAGCCACCACATAGATTACCGAT-AACGGCCACATAATCGCATCATG
* * *
21198330 GATAAACCACCACATA-ATTACCGATAACGGCCACATAATCGCATCGTG
1 GACAAGCCACCACATAGATTACCGATAACGGCCACATAATCGCATCATG
*
21198378 GACAAGCCACCACATAGATTACCGATAATGGCCACATAATCGCA
1 GACAAGCCACCACATAGATTACCGATAACGGCCACATAATCGCA
21198422 GTTAAATTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
47 12 0.15
48 40 0.51
49 26 0.33
ACGTcount: A:0.40, C:0.29, G:0.14, T:0.17
Consensus pattern (49 bp):
GACAAGCCACCACATAGATTACCGATAACGGCCACATAATCGCATCATG
Found at i:21199773 original size:56 final size:56
Alignment explanation
Indices: 21199643--21199906 Score: 279
Period size: 56 Copynumber: 4.8 Consensus size: 56
21199633 AAATACTCCT
* * * * *
21199643 CTCGAGCTGA-AATAACCTTACGCTCTAACCGAGACGTAGGCAA--ACCAGAGCTCTA
1 CTCGAGCT-ATAATCACATTACGCTCTAACCGAGACGTAAG-AATGTCCAAAGCTCTA
*
21199698 CTCGAGCTATAA-CAGCATTACGCTCTAACCGAGACGTAAGAATGTCCAAAGTTCTA
1 CTCGAGCTATAATCA-CATTACGCTCTAACCGAGACGTAAGAATGTCCAAAGCTCTA
* * * *
21199754 CTCGAGCTATAATGACATTACGCTCTAATCGAGACATAAGCATGTCCAAAGCTCTA
1 CTCGAGCTATAATCACATTACGCTCTAACCGAGACGTAAGAATGTCCAAAGCTCTA
* * * *
21199810 CCCGAGCTATAA-CAGCATTACGCTCTAATCGAGACGTAAGCATGT-CAAAGTTCTA
1 CTCGAGCTATAATCA-CATTACGCTCTAACCGAGACGTAAGAATGTCCAAAGCTCTA
* ** * *
21199865 CTCGAGATATAATTGCATTACACTCTAACCGAGATGTAAGAA
1 CTCGAGCTATAATCACATTACGCTCTAACCGAGACGTAAGAA
21199907 GATCGGAGCT
Statistics
Matches: 179, Mismatches: 23, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
54 4 0.02
55 76 0.42
56 98 0.55
57 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (56 bp):
CTCGAGCTATAATCACATTACGCTCTAACCGAGACGTAAGAATGTCCAAAGCTCTA
Found at i:21199884 original size:111 final size:111
Alignment explanation
Indices: 21199660--21199898 Score: 347
Period size: 111 Copynumber: 2.2 Consensus size: 111
21199650 TGAAATAACC
* * * *
21199660 TTACGCTCTAACCGAGACGTAGGCAAACCAGAGCTCTACTCGAGCTATAACAGCATTACGCTCTA
1 TTACGCTCTAACCGAGACATAAGCAAACCAAAGCTCTACCCGAGCTATAACAGCATTACGCTCTA
*
21199725 ACCGAGACGTAAGAATGTCCAAAGTTCTACTCGAGCTATAATGACA
66 ACCGAGACGTAAGAATGTCCAAAGTTCTACTCGAGATATAATGACA
* **
21199771 TTACGCTCTAATCGAGACATAAGCATGTCCAAAGCTCTACCCGAGCTATAACAGCATTACGCTCT
1 TTACGCTCTAACCGAGACATAAGCA-AACCAAAGCTCTACCCGAGCTATAACAGCATTACGCTCT
* *
21199836 AATCGAGACGTAAGCATGT-CAAAGTTCTACTCGAGATATAATTG-CA
65 AACCGAGACGTAAGAATGTCCAAAGTTCTACTCGAGATATAA-TGACA
*
21199882 TTACACTCTAACCGAGA
1 TTACGCTCTAACCGAGA
21199899 TGTAAGAAGA
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
111 60 0.53
112 54 0.47
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (111 bp):
TTACGCTCTAACCGAGACATAAGCAAACCAAAGCTCTACCCGAGCTATAACAGCATTACGCTCTA
ACCGAGACGTAAGAATGTCCAAAGTTCTACTCGAGATATAATGACA
Found at i:21204199 original size:24 final size:24
Alignment explanation
Indices: 21204171--21204220 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
21204161 TATACTGGTT
21204171 AACCATTCTGGGCTCGTAAGAGCA
1 AACCATTCTGGGCTCGTAAGAGCA
**
21204195 AACCATTCTGGGCTCGTGTGAGCA
1 AACCATTCTGGGCTCGTAAGAGCA
21204219 AA
1 AA
21204221 TGTTGTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (24 bp):
AACCATTCTGGGCTCGTAAGAGCA
Found at i:21204759 original size:21 final size:21
Alignment explanation
Indices: 21204725--21204764 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21204715 TGTGATTCTG
* *
21204725 CATACTTGTTTCGGTAGAACC
1 CATACATGTATCGGTAGAACC
21204746 CATACATGTATCGGTAGAA
1 CATACATGTATCGGTAGAA
21204765 GTATAGCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (21 bp):
CATACATGTATCGGTAGAACC
Found at i:21204942 original size:21 final size:21
Alignment explanation
Indices: 21204918--21204994 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
21204908 AGAGTTTTTA
21204918 GTATCGGTAGAAGTAAGACTT
1 GTATCGGTAGAAGTAAGACTT
*
21204939 GTATCAGTAGAAG--AGTCACTT
1 GTATCGGTAGAAGTAAG--ACTT
* **
21204960 GTATCGGTAGAACTATCACTT
1 GTATCGGTAGAAGTAAGACTT
*
21204981 GTATTGGTAGAAGT
1 GTATCGGTAGAAGT
21204995 CTGTACTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
19 2 0.04
21 43 0.96
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGTAAGACTT
Found at i:21205655 original size:18 final size:18
Alignment explanation
Indices: 21205634--21205668 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21205624 GGCACCTCTA
*
21205634 GTAAGGCCTCCGCCTCCC
1 GTAAGGCCTCCACCTCCC
21205652 GTAAGGCCTCCACCTCC
1 GTAAGGCCTCCACCTCC
21205669 TCCTGTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.49, G:0.20, T:0.17
Consensus pattern (18 bp):
GTAAGGCCTCCACCTCCC
Found at i:21209436 original size:21 final size:21
Alignment explanation
Indices: 21209404--21209480 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
21209394 AGAGTTTTTA
*
21209404 GTATCAGTAGAAGTAAGACTT
1 GTATCGGTAGAAGTAAGACTT
*
21209425 GCATCGGTAGAAG--AGTCACTT
1 GTATCGGTAGAAGTAAG--ACTT
* **
21209446 GTATCGGTAGAACTATCACTT
1 GTATCGGTAGAAGTAAGACTT
*
21209467 GTATCGATAGAAGT
1 GTATCGGTAGAAGT
21209481 TTGTACTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 2 0.05
21 42 0.95
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (21 bp):
GTATCGGTAGAAGTAAGACTT
Found at i:21212842 original size:19 final size:20
Alignment explanation
Indices: 21212818--21212858 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
21212808 ACAAAGCCCA
21212818 AAAATAAAAAT-AAAAACCT
1 AAAATAAAAATGAAAAACCT
*
21212837 AAAATAAAGATGGAAAAACCT
1 AAAATAAAAAT-GAAAAACCT
21212858 A
1 A
21212859 GCAGTTGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
21 9 0.47
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (20 bp):
AAAATAAAAATGAAAAACCT
Found at i:21213416 original size:13 final size:13
Alignment explanation
Indices: 21213400--21213433 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
21213390 TAGCATTTAA
21213400 TTTTTATTTTTGT
1 TTTTTATTTTTGT
*
21213413 TTTTTGTTTTTGT
1 TTTTTATTTTTGT
21213426 TTATTTAT
1 TT-TTTAT
21213434 CTAGTTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (13 bp):
TTTTTATTTTTGT
Found at i:21213756 original size:2 final size:2
Alignment explanation
Indices: 21213749--21213773 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21213739 ATATTAGTGT
21213749 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
21213774 TGTTGTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21213836 original size:29 final size:29
Alignment explanation
Indices: 21213803--21213865 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
21213793 TAATTAATAT
* *
21213803 TTATTTTCA-TTATTACTATGATTATATTG
1 TTATTTT-ATTTAATACTATAATTATATTG
*
21213832 TTATTTTATTTAATACTATAATTATATTT
1 TTATTTTATTTAATACTATAATTATATTG
21213861 TTATT
1 TTATT
21213866 GTGTTATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (29 bp):
TTATTTTATTTAATACTATAATTATATTG
Found at i:21215250 original size:63 final size:59
Alignment explanation
Indices: 21215143--21215268 Score: 139
Period size: 63 Copynumber: 2.1 Consensus size: 59
21215133 TTAAGGGTCT
* * * **
21215143 AATTTTTTTTTATATTTTTAAAGGTAAAAAATTTATCAATTTTTAA-AGGACTTCAAAAA
1 AATTATTTTTTATATTTTTAAAGCTAAAAAATTTATCAACTTTTAAGAGG-CTAAAAAAA
21215202 AATTATTTTTTA-ATTTTTAAGAGCTCAAAAATATTTTCATCAACTTTTAAGAGGCTAAAAAAA
1 AATTATTTTTTATATTTTTAA-AGCT-AAAAA-A-TTT-ATCAACTTTTAAGAGGCTAAAAAAA
21215265 AATT
1 AATT
21215269 TCTAATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
58 8 0.14
59 14 0.25
60 5 0.09
61 1 0.02
62 3 0.05
63 22 0.39
64 3 0.05
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (59 bp):
AATTATTTTTTATATTTTTAAAGCTAAAAAATTTATCAACTTTTAAGAGGCTAAAAAAA
Found at i:21215678 original size:22 final size:21
Alignment explanation
Indices: 21215648--21215711 Score: 76
Period size: 20 Copynumber: 3.0 Consensus size: 21
21215638 AGAGTTATTA
*
21215648 ATTAAAAAAATTATGATAATT
1 ATTATAAAAATTATGATAATT
* * *
21215669 ATATTTAAAAATAATTATAATT
1 AT-TATAAAAATTATGATAATT
21215691 -TTATAAAAATTATGATAATT
1 ATTATAAAAATTATGATAATT
21215711 A
1 A
21215712 CGCATCTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
20 16 0.47
21 3 0.09
22 15 0.44
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
ATTATAAAAATTATGATAATT
Found at i:21215724 original size:43 final size:42
Alignment explanation
Indices: 21215653--21215733 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
21215643 TATTAATTAA
* * *
21215653 AAAAATTATGATAATTATATTTAAAAATAATTATAATTTTAT
1 AAAAATTATGATAATTACATCTAAAAATAATTAAAATTTTAT
21215695 AAAAATTATGATAATTACGCATCT-AAAATAATTAAAATT
1 AAAAATTATGATAATTA--CATCTAAAAATAATTAAAATT
21215734 ACAATTACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 17 0.50
43 14 0.41
44 3 0.09
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (42 bp):
AAAAATTATGATAATTACATCTAAAAATAATTAAAATTTTAT
Found at i:21228755 original size:21 final size:21
Alignment explanation
Indices: 21228731--21228770 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
21228721 TAGTGCAGAC
21228731 TTTTACTGATACAAGTGACAG
1 TTTTACTGATACAAGTGACAG
21228752 TTTTACTGATACAAGTGAC
1 TTTTACTGATACAAGTGAC
21228771 TCTTCTATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (21 bp):
TTTTACTGATACAAGTGACAG
Found at i:21231321 original size:44 final size:44
Alignment explanation
Indices: 21231272--21231524 Score: 245
Period size: 42 Copynumber: 5.9 Consensus size: 44
21231262 CTCGTGACTT
21231272 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
1 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
* * *
21231316 GGAATGAGCATGAGAATAAGTTT--AAAGGAAGACTCT-TGACTC
1 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACT-TATGTCTC
* * *
21231358 AGAATGAGTAAGAGAATATGTTTAAAAAGGAAGACTCATGTCTC
1 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
* * * * *
21231402 -GAGATGAGAATGAGATTTTGTTT--AAAGGAAGACTCATGTCTT
1 AGA-ATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
* * * * * *
21231444 GGAATGAGCGTGAGATTATGTTTGAAAAGGAAAACTTATGCCTC
1 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
* * *
21231488 AGTA-GAGTATAAG-AT-TGTTTAAAAAGGAAGACTTATG
1 AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATG
21231525 AACCTGTGAA
Statistics
Matches: 172, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
41 20 0.12
42 71 0.41
43 11 0.06
44 70 0.41
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (44 bp):
AGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
Found at i:21231363 original size:42 final size:42
Alignment explanation
Indices: 21231246--21231475 Score: 194
Period size: 44 Copynumber: 5.3 Consensus size: 42
21231236 GAAACATTTG
* * *
21231246 ATGTATAAATGGAAGACTCGTGACTTAGAATGAGCATGAGAAT
1 ATGTTTAAA-GGAAGACTCTTGACTCAGAATGAGCATGAGAAT
* *
21231289 ATGTTTAAAAAGGAAGACT-TATGTCTCGGAATGAGCATGAGAAT
1 ATGTTT--AAAGGAAGACTCT-TGACTCAGAATGAGCATGAGAAT
* * *
21231333 AAGTTTAAAGGAAGACTCTTGACTCAGAATGAGTAAGAGAAT
1 ATGTTTAAAGGAAGACTCTTGACTCAGAATGAGCATGAGAAT
* * * *
21231375 ATGTTTAAAAAGGAAGACTCATGTCTC-GAGATGAGAATGAGATT
1 ATGTTT--AAAGGAAGACTCTTGACTCAGA-ATGAGCATGAGAAT
* * * ** * *
21231419 TTGTTTAAAGGAAGACTCATGTCTTGGAATGAGCGTGAGATT
1 ATGTTTAAAGGAAGACTCTTGACTCAGAATGAGCATGAGAAT
21231461 ATGTTTGAAAAGGAA
1 ATGTTT--AAAGGAA
21231476 AACTTATGCC
Statistics
Matches: 156, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
42 70 0.45
43 10 0.06
44 73 0.47
45 3 0.02
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.27
Consensus pattern (42 bp):
ATGTTTAAAGGAAGACTCTTGACTCAGAATGAGCATGAGAAT
Found at i:21231401 original size:86 final size:86
Alignment explanation
Indices: 21231251--21231475 Score: 272
Period size: 86 Copynumber: 2.6 Consensus size: 86
21231241 ATTTGATGTA
* * *
21231251 TAAATGGAAGACTCGTGACTTAGAATGAGCATGAGAATATGTTTAAAAAGGAAGACTTATGTCTC
1 TAAA-GGAAGACTCGTGACTCAGAATGAGCAAGAGAATATGTTTAAAAAGGAAGACTCATGTCTC
*
21231316 G-GAATGAGCATGAGAATAAGTT
65 GAG-ATGAGAATGAGAATAAGTT
* *
21231338 TAAAGGAAGACTCTTGACTCAGAATGAGTAAGAGAATATGTTTAAAAAGGAAGACTCATGTCTCG
1 TAAAGGAAGACTCGTGACTCAGAATGAGCAAGAGAATATGTTTAAAAAGGAAGACTCATGTCTCG
* **
21231403 AGATGAGAATGAGATTTTGTT
66 AGATGAGAATGAGAATAAGTT
* * ** ** * *
21231424 TAAAGGAAGACTCATGTCTTGGAATGAGCGTGAGATTATGTTTGAAAAGGAA
1 TAAAGGAAGACTCGTGACTCAGAATGAGCAAGAGAATATGTTTAAAAAGGAA
21231476 AACTTATGCC
Statistics
Matches: 119, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
86 114 0.96
87 5 0.04
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.27
Consensus pattern (86 bp):
TAAAGGAAGACTCGTGACTCAGAATGAGCAAGAGAATATGTTTAAAAAGGAAGACTCATGTCTCG
AGATGAGAATGAGAATAAGTT
Found at i:21236257 original size:25 final size:25
Alignment explanation
Indices: 21236223--21236276 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
21236213 TAAAACAACT
*
21236223 TTAAAAAAAAACTC-AAGAGCAATTC
1 TTAAAAAAAAACTCAAAGAG-AATTA
*
21236248 TTAAAGAAAAACTCAAAGAGAATTA
1 TTAAAAAAAAACTCAAAGAGAATTA
21236273 TTAA
1 TTAA
21236277 TAACTCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.22
Consensus pattern (25 bp):
TTAAAAAAAAACTCAAAGAGAATTA
Found at i:21236796 original size:25 final size:25
Alignment explanation
Indices: 21236768--21237045 Score: 378
Period size: 25 Copynumber: 11.2 Consensus size: 25
21236758 AAAAAGTCGG
* * *
21236768 ATATCGCTCTTACGAGTCAGTCAGA
1 ATATCGCTCATACGAGCCAGTCATA
* * **
21236793 ATATCGCTCAGACGAGCTAGTC-GG
1 ATATCGCTCATACGAGCCAGTCATA
* *
21236817 ATATCGCTCATATGAGCTAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
*
21236842 ATATCGCTCATACGAGCTAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
*
21236867 ATATCGCTCATACGAGCCAATCATA
1 ATATCGCTCATACGAGCCAGTCATA
* * *
21236892 ATATCGCTCAAACAAGCCAATCATA
1 ATATCGCTCATACGAGCCAGTCATA
*
21236917 ATATCGCTCATACGAGACAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
21236942 ATATCGCTCATACGAGCCAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
* * *
21236967 ATATCGCTCAGACTAGCCAGTTATA
1 ATATCGCTCATACGAGCCAGTCATA
*
21236992 ATATCACTCATACGAGCCAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
21237017 ATATCGCTCATACGAGCCAGTCATA
1 ATATCGCTCATACGAGCCAGTCATA
21237042 ATAT
1 ATAT
21237046 TTCTTAGATG
Statistics
Matches: 225, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
24 21 0.09
25 204 0.91
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (25 bp):
ATATCGCTCATACGAGCCAGTCATA
Found at i:21240694 original size:30 final size:30
Alignment explanation
Indices: 21240602--21240832 Score: 111
Period size: 30 Copynumber: 7.8 Consensus size: 30
21240592 AAGGGGTCGA
*
21240602 AAAAT-TAAGTTTTAGAGAA-TTTAA-GGTT
1 AAAATGTAATTTTTAGA-AAGTTTAAGGGTT
* * ** * *
21240630 AAAATGTAATTTTGAAAAAAATTGAGGGTC
1 AAAATGTAATTTTTAGAAAGTTTAAGGGTT
*
21240660 AAAATGTAATTTTTAGAAAGTTTAAGGATT
1 AAAATGTAATTTTTAGAAAGTTTAAGGGTT
* * ** *
21240690 AAAATGTGA-TTTTGGAAAGGTTTGGGGGTC
1 AAAATGTAATTTTTAGAAA-GTTTAAGGGTT
* *
21240720 AAAATGTGA-TTTTAGAAAAGTTT-GGGAGTT
1 AAAATGTAATTTTTAG-AAAGTTTAAGG-GTT
* * * *
21240750 AAAATGCAA-TTTTGGAAAAATTTGA-GGTT
1 AAAATGTAATTTTTAG-AAAGTTTAAGGGTT
* * * * *
21240779 AAAAT-CACATTTCTGGAAAGTTTAGGGGTC
1 AAAATGTA-ATTTTTAGAAAGTTTAAGGGTT
**
21240809 AAAATCAAATTTTTAGAAAGTTTA
1 AAAATGTAATTTTTAGAAAGTTTA
21240833 GGTACCTTTT
Statistics
Matches: 158, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
28 9 0.06
29 37 0.23
30 108 0.68
31 4 0.03
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTTAGAAAGTTTAAGGGTT
Done.