Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 68 of 193
Found at i:21861398 original size:24 final size:23
Alignment explanation
Indices: 21861371--21861425 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 23
21861361 AATAATGAAT
21861371 ATGAATATATAAAAAATATAAAAA
1 ATGAATATATAAAAAATA-AAAAA
*
21861395 ATGATAGAATATAAAAAATAAAAAA
1 ATGA-A-TATATAAAAAATAAAAAA
21861420 AT-AATA
1 ATGAATA
21861426 AGAGGATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
23 1 0.04
24 5 0.19
25 8 0.30
26 12 0.44
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (23 bp):
ATGAATATATAAAAAATAAAAAA
Found at i:21861422 original size:17 final size:17
Alignment explanation
Indices: 21861381--21861422 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
21861371 ATGAATATAT
*
21861381 AAAAAATATAAAAAATG
1 AAAAAATATAAAAAATA
* *
21861398 ATAGAATATAAAAAATA
1 AAAAAATATAAAAAATA
21861415 AAAAAATA
1 AAAAAATA
21861423 ATAAGAGGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (17 bp):
AAAAAATATAAAAAATA
Found at i:21861657 original size:20 final size:20
Alignment explanation
Indices: 21861627--21861669 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
21861617 GGGTAAAATT
21861627 AAAATAAATT-AAAAGATAA
1 AAAATAAATTAAAAAGATAA
21861646 AAAATGAAATTAAAAAGATAA
1 AAAAT-AAATTAAAAAGATAA
21861667 AAA
1 AAA
21861670 CGGCGGAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 5 0.23
20 5 0.23
21 12 0.55
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (20 bp):
AAAATAAATTAAAAAGATAA
Found at i:21863286 original size:50 final size:50
Alignment explanation
Indices: 21863222--21863834 Score: 243
Period size: 50 Copynumber: 12.2 Consensus size: 50
21863212 TTTTCTTCTA
* * * *
21863222 TAGCTTTAACCTGATCCACTGTAACTTTAGGGGTATAGGATTTGGTTTTG
1 TAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
** * * * **
21863272 TAGCTTCAATCTGATCCACTATAAC-TTCGTGGATATAGGATTTGAC-GTCA
1 TAGCTTCAATCTGATCCACTGCAACTTTAG-GGGTATAGGATTTG-CTTTTG
* * * * *
21863322 TAGCTT-TATGTTGCTCCACTGCAACTTTAGGGAG-ATAAAGATTTTCTTTTG
1 TAGCTTCAAT-CTGATCCACTGCAACTTTAGGG-GTAT-AGGATTTGCTTTTG
* * * * *
21863373 TAGCTTCAAT-TCGATCCATTGCAACTTTAGGGATATAGGATTTGATGTCG
1 TAGCTTCAATCT-GATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
* * * *
21863423 TAGCTTCATAT-TGCTCCACTGCAACTTCAAGGAGATAAAGG-TTCT-CTTTTG
1 TAGCTTCA-ATCTGATCCACTGCAACTT-TAGG-GGTATAGGATT-TGCTTTTG
* * * * * *
21863474 TAGTTTTAAT-TCGA-CCTTCTGTAACTTTAAGGGTATAGGATTTGGTTTTG
1 TAGCTTCAATCT-GATCC-ACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
* * * * **
21863524 TAGCTTC-ATCCTGCTCTACTGCAACTTAAAAGGG-ATAAGGATTTGCTTTCA
1 TAGCTTCAAT-CTGATCCACTGCAACTT-TAGGGGTAT-AGGATTTGCTTTTG
* * * * * * * *
21863575 TAGCTTCAATCCGATCCACTGTAACTTCAGGGATATAAGTTTTGATGTTG
1 TAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
*** * * * ** *
21863625 TAGCTTTTTTTTGATCAACTACAA-TTTCAGGGAG-ATAAAAATTTGCTTTTT
1 TAGCTTCAATCTGATCCACTGCAACTTT-AGGG-GTAT-AGGATTTGCTTTTG
* * * * *
21863676 TAGTTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGACTTGGTTTTG
1 TAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
* * * * * * **
21863726 TAGCTTC-ATCCTGCTCTATTGCAACTTCAGAGAG-ATAAGGATTTACTTTCA
1 TAGCTTCAAT-CTGATCCACTGCAACTTTAG-GGGTAT-AGGATTTGCTTTTG
* * * * * * *
21863777 CAGCTTTAAT-TCGATCCACTACAACTTTAGGGATATAGGATTTGATGTGG
1 TAGCTTCAATCT-GATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
21863827 TAGCTTCA
1 TAGCTTCA
21863835 TCTTGCTCTA
Statistics
Matches: 401, Mismatches: 126, Indels: 72
0.67 0.21 0.12
Matches are distributed among these distances:
49 18 0.04
50 203 0.51
51 164 0.41
52 16 0.04
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (50 bp):
TAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATAGGATTTGCTTTTG
Found at i:21863378 original size:51 final size:50
Alignment explanation
Indices: 21863322--21863481 Score: 142
Period size: 51 Copynumber: 3.2 Consensus size: 50
21863312 TTTGACGTCA
21863322 TAGCTTTATGTTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTG
1 TAGCTTTAT-TTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTG
* * * * * * ** * *
21863373 TAGCTTCAATTCGATCCATTGCAACTTTAGGGATAT-AGGATTTGATGTCG
1 TAGCTT-TATTTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTG
* * * * *
21863423 TAGCTTCATATTGCTCCACTGCAACTTCAAGGAGATAAAGGTTCTCTTTTG
1 TAGCTTTAT-TTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTG
*
21863474 TAGTTTTA
1 TAGCTTTA
21863482 ATTCGACCTT
Statistics
Matches: 80, Mismatches: 26, Indels: 6
0.71 0.23 0.05
Matches are distributed among these distances:
49 2 0.03
50 35 0.44
51 41 0.51
52 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (50 bp):
TAGCTTTATTTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTG
Found at i:21863399 original size:101 final size:100
Alignment explanation
Indices: 21863236--21863924 Score: 480
Period size: 101 Copynumber: 6.8 Consensus size: 100
21863226 TTTAACCTGA
* * * **
21863236 TCCACTGTAACTTTAGGG-G-TATAGGATTTGGTTTTGTAGCTTCAA-TCTGATCCACTATAACT
1 TCCACTGCAACTTTAGGGAGATA-AAGATTTGCTTTTGTAGCTTCAATTC-GATCCACTGCAACT
* ** * *
21863298 TCGTGGATATAGGATTTGACGTCATAGCTTTATGTTGC
64 TCG-GGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* *
21863336 TCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTGTAGCTTCAATTCGATCCATTGCAACTTT
1 TCCACTGCAACTTTAGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTCGATCCACTGCAAC-TT
* * *
21863401 AGGGATATAGGATTTGATGTCGTAGCTTCATATTGC
65 CGGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* * * * * * *
21863437 TCCACTGCAACTTCAAGGAGATAAAGGTTCT-CTTTTGTAGTTTTAATTCGA-CCTTCTGTAACT
1 TCCACTGCAACTTTAGGGAGATAAAGATT-TGCTTTTGTAGCTTCAATTCGATCC-ACTGCAAC-
* * * *
21863500 TTAAGGG-TATAGGATTTGGTTTTGTAGCTTCATCCTGC
63 TT-CGGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* * * * ** * *
21863538 TCTACTGCAACTTAAAAGG-GATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTGTAACTT
1 TCCACTGCAACTT-TAGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTCGATCCACTGCAACTT
* * ** * *
21863602 CAGGGATATAAGTTTTGATGTTGTAGCTTTTTTTTGA
65 C-GGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* * * * * *
21863639 TCAACTACAA-TTTCAGGGAGATAAAAATTTGCTTTTTTAGTTTCAA-TCTGACCCACTGCAACT
1 TCCACTGCAACTTT-AGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTC-GATCCACTGCAACT
* * * * *
21863702 TCAGGGGTATAGGACTTGGTTTTGTAGCTTCATCCTGC
64 TC-GGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* * * * * * *** * *
21863740 TCTATTGCAACTTCAGAGAGATAAGGATTTACTTTCACAGCTTTAATTCGATCCACTACAACTTT
1 TCCACTGCAACTTTAGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTCGATCCACTGCAAC-TT
* *
21863805 AGGGATATAGGATTTGATGTGGTAGCTTCATCTTGC
65 CGGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
* * * * * ** * * * * * *
21863841 TCTACTACAACTTGAGAGAGATAAAGATTTTCTACTGTAGTTTTAGTTTGA-CCCCTACAACTTC
1 TCCACTGCAACTTTAGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTCGATCCACTGCAACTTC
21863905 AGGGATATAGGATTTGATGT
66 -GGGATATAGGATTTGATGT
21863925 CATACTTGTC
Statistics
Matches: 465, Mismatches: 105, Indels: 38
0.76 0.17 0.06
Matches are distributed among these distances:
99 2 0.00
100 59 0.13
101 380 0.82
102 24 0.05
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (100 bp):
TCCACTGCAACTTTAGGGAGATAAAGATTTGCTTTTGTAGCTTCAATTCGATCCACTGCAACTTC
GGGATATAGGATTTGATGTTGTAGCTTCATCTTGC
Found at i:21863601 original size:51 final size:50
Alignment explanation
Indices: 21863492--21863601 Score: 116
Period size: 51 Copynumber: 2.2 Consensus size: 50
21863482 ATTCGACCTT
* * ** * *
21863492 CTGTAACTTTAAGGGTATAGGATTTGGTTTTGTAGCTTCATCCTGCTCTA
1 CTGTAACTTAAAGGGTATAGGATTTGCTTTCATAGCTTCATCCTGATCCA
*
21863542 CTGCAACTTAAAAGGG-ATAAGGATTTGCTTTCATAGCTTCAATCC-GATCCA
1 CTGTAACTT-AAAGGGTAT-AGGATTTGCTTTCATAGCTTC-ATCCTGATCCA
21863593 CTGTAACTT
1 CTGTAACTT
21863602 CAGGGATATA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
50 10 0.20
51 35 0.71
52 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (50 bp):
CTGTAACTTAAAGGGTATAGGATTTGCTTTCATAGCTTCATCCTGATCCA
Found at i:21863621 original size:202 final size:200
Alignment explanation
Indices: 21863333--21863916 Score: 627
Period size: 202 Copynumber: 2.9 Consensus size: 200
21863323 AGCTTTATGT
* * * * * ** *
21863333 TGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTGTAGCTTCAATTCGATCCATTGCAAC
1 TGCTCTACTGCAACTTAAAGG-GATAAGGATTTACTTTCATAGCTTCAATTCGATCCACTGCAAC
* *
21863398 TTTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCCACTGCAACTTCAAGGAGATAAAG
65 TTTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCAACTACAACTTCAAGGAGATAAAG
* ** * * *
21863463 GTTCTCTTTTGTAGTTTTAAT-TCGACCTTCTGTAACTTTAAGGGTATAGGATTTGGTTTTGTAG
130 ATT-TCTTTTGTAGTTTTAATCT-GACCCACTGCAACTTCAAGGGTATAGGACTTGGTTTTGTAG
21863527 CTTCATCC
193 CTTCATCC
* * *
21863535 TGCTCTACTGCAACTTAAAAGGGATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTGTAAC
1 TGCTCTACTGCAACTT-AAAGGGATAAGGATTTACTTTCATAGCTTCAATTCGATCCACTGCAAC
* * * * ** * * * * *
21863600 TTCAGGGATATAAGTTTTGATGTTGTAGCTTTTTTTTGATCAACTACAATTTCAGGGAGATAAAA
65 TTTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCAACTACAACTTCAAGGAGATAAAG
* * *
21863665 ATTTGCTTTTTTAGTTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGACTTGGTTTTGTAGC
130 ATTT-CTTTTGTAGTTTTAATCTGACCCACTGCAACTTCAAGGGTATAGGACTTGGTTTTGTAGC
21863730 TTCATCC
194 TTCATCC
* * * * * *
21863737 TGCTCTATTGCAACTTCAGAGAGATAAGGATTTACTTTCACAGCTTTAATTCGATCCACTACAAC
1 TGCTCTACTGCAACTT-AAAGGGATAAGGATTTACTTTCATAGCTTCAATTCGATCCACTGCAAC
* * * *
21863802 TTTAGGGATATAGGATTTGATGTGGTAGCTTCATCTTGCTCTACTACAACTT-GAGAGAGATAAA
65 TTTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCAACTACAACTTCAAG-GAGATAAA
** * * *
21863866 GATTTTCTACTGTAGTTTTAGTTTGACCC-CTACAACTTC-AGGGATATAGGA
129 GA-TTTCTTTTGTAGTTTTAATCTGACCCACTGCAACTTCAAGGG-TATAGGA
21863917 TTTGATGTCA
Statistics
Matches: 313, Mismatches: 63, Indels: 13
0.80 0.16 0.03
Matches are distributed among these distances:
200 3 0.01
201 18 0.06
202 285 0.91
203 7 0.02
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (200 bp):
TGCTCTACTGCAACTTAAAGGGATAAGGATTTACTTTCATAGCTTCAATTCGATCCACTGCAACT
TTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCAACTACAACTTCAAGGAGATAAAGA
TTTCTTTTGTAGTTTTAATCTGACCCACTGCAACTTCAAGGGTATAGGACTTGGTTTTGTAGCTT
CATCC
Found at i:21863805 original size:303 final size:303
Alignment explanation
Indices: 21863258--21863853 Score: 677
Period size: 303 Copynumber: 2.0 Consensus size: 303
21863248 TTAGGGGTAT
* ** * *
21863258 AGGATTTGGTTTTGTAGCTTCAATCTGATCCACTATAACTTCGTGGATATAGGATTTGACGTCAT
1 AGGATTTGCTTTCATAGCTTCAATCCGATCCACTATAACTTCGTGGATATAAGATTTGACGTCAT
* * * * * *
21863323 AGCTTTATGTTGCTCCACTGCAACTTTAGGGAGATAAAGATTTTCTTTTGTAGCTTCAATTCGAT
66 AGCTTTATGTTGATCAACTACAACTTTAGGGAGATAAAAATTTGCTTTTGTAGCTTCAATTCGAC
* * * *
21863388 CCATTGCAACTTTAGGGATATAGGATTTGATGTCGTAGCTTCATATTGCTCCACTGCAACTTCAA
131 CCACTGCAACTTCAGGGATATAGGACTTGATGTCGTAGCTTCATACTGCTCCACTGCAACTTCAA
*** * * **
21863453 GGAGATAAAGGTTCTCTTTTGTAGTTTTAATTCGACCTTCTGTAACTTTAAGGG-TATAGGATTT
196 GGAGATAAAGGTTCTCTTTCACAGCTTTAATTCGACCTACTACAACTTT-AGGGATATAGGATTT
* * * *
21863517 GGTTTTGTAGCTTCATCCTGCTCTACTGCAACTTAAAAGGGATA
260 GATGTGGTAGCTTCATCCTGCTCTACTACAACTTAAAAGGGATA
* * * **
21863561 AGGATTTGCTTTCATAGCTTCAATCCGATCCACTGTAACTTCAG-GGATATAAGTTTTGATGTTG
1 AGGATTTGCTTTCATAGCTTCAATCCGATCCACTATAACTTC-GTGGATATAAGATTTGACGTCA
* * * *
21863625 TAGCTTTTTTTTGATCAACTACAA-TTTCAGGGAGATAAAAATTTGCTTTTTTAGTTTCAA-TCT
65 TAGCTTTATGTTGATCAACTACAACTTT-AGGGAGATAAAAATTTGCTTTTGTAGCTTCAATTC-
* * * * * * *
21863688 GACCCACTGCAACTTCAGGGGTATAGGACTTGGTTTTGTAGCTTCATCCTGCTCTATTGCAACTT
128 GACCCACTGCAACTTCAGGGATATAGGACTTGATGTCGTAGCTTCATACTGCTCCACTGCAACTT
21863753 C-AGAGAGAT-AAGGATT-TACTTTCACAGCTTTAATTCGATCC-ACTACAACTTTAGGGATATA
193 CAAG-GAGATAAAGG-TTCT-CTTTCACAGCTTTAATTCGA-CCTACTACAACTTTAGGGATATA
*
21863814 GGATTTGATGTGGTAGCTTCATCTTGCTCTACTACAACTT
254 GGATTTGATGTGGTAGCTTCATCCTGCTCTACTACAACTT
21863854 GAGAGAGATA
Statistics
Matches: 242, Mismatches: 43, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
302 16 0.07
303 223 0.92
304 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (303 bp):
AGGATTTGCTTTCATAGCTTCAATCCGATCCACTATAACTTCGTGGATATAAGATTTGACGTCAT
AGCTTTATGTTGATCAACTACAACTTTAGGGAGATAAAAATTTGCTTTTGTAGCTTCAATTCGAC
CCACTGCAACTTCAGGGATATAGGACTTGATGTCGTAGCTTCATACTGCTCCACTGCAACTTCAA
GGAGATAAAGGTTCTCTTTCACAGCTTTAATTCGACCTACTACAACTTTAGGGATATAGGATTTG
ATGTGGTAGCTTCATCCTGCTCTACTACAACTTAAAAGGGATA
Found at i:21870330 original size:37 final size:37
Alignment explanation
Indices: 21870289--21870430 Score: 135
Period size: 37 Copynumber: 3.8 Consensus size: 37
21870279 ATTCGGGCTG
*
21870289 TGTGCCTAGCAGGCTTCGTGCCGGTGTATTTGAGCTA
1 TGTGCCTAGCAGGCTTTGTGCCGGTGTATTTGAGCTA
* * * *
21870326 TGTGCCTAGCAAGCTTTGCGTCGGTGTA-TTCAGGCTA
1 TGTGCCTAGCAGGCTTTGTGCCGGTGTATTTGA-GCTA
* ** ** * *
21870363 TGTACCTAATAGGCTTTTGTGCCAATGTATTTGGGCAA
1 TGTGCCTAGCAGGC-TTTGTGCCGGTGTATTTGAGCTA
*
21870401 TGTGCCTAGTAGGCTTTGTGCCGGTG-ATTT
1 TGTGCCTAGCAGGCTTTGTGCCGGTGTATTT
21870431 AAGGTCAAAT
Statistics
Matches: 82, Mismatches: 20, Indels: 7
0.75 0.18 0.06
Matches are distributed among these distances:
36 7 0.09
37 48 0.59
38 25 0.30
39 2 0.02
ACGTcount: A:0.16, C:0.19, G:0.30, T:0.35
Consensus pattern (37 bp):
TGTGCCTAGCAGGCTTTGTGCCGGTGTATTTGAGCTA
Found at i:21871989 original size:19 final size:18
Alignment explanation
Indices: 21871958--21871993 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
21871948 TTTATCATAA
*
21871958 TTTTTTTTCTTTTTCTTC
1 TTTTTTCTCTTTTTCTTC
21871976 TTTTTTCTCATTTTTCTT
1 TTTTTTCTC-TTTTTCTT
21871994 TTTCAAGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTCTCTTTTTCTTC
Found at i:21872612 original size:34 final size:34
Alignment explanation
Indices: 21872548--21872613 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
21872538 ATATATATGG
* *
21872548 AAATGCAATGACAATGTAGATGTAGCGACAATAA
1 AAATGCAATGACAATATAGATGCAGCGACAATAA
* *
21872582 AAATGCAATGACATTAATA-ATGCAGGGACAAT
1 AAATGCAATGACAAT-ATAGATGCAGCGACAAT
21872614 TATACTATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (34 bp):
AAATGCAATGACAATATAGATGCAGCGACAATAA
Found at i:21875279 original size:50 final size:50
Alignment explanation
Indices: 21875070--21875389 Score: 161
Period size: 50 Copynumber: 6.4 Consensus size: 50
21875060 TTCAATTAGA
* * * *
21875070 TCCACTGCAACTTCAAGGATAT-AGTATTTGATGACGTAACTTCATCTTGC
1 TCCATTGCAACTTCAGGGATATAAG-ATTTGATGTCGTAGCTTCATCTTGC
** * * * * * * * *
21875120 TCCACCGTATCTCCAGGGAGATAAGATTTGCT-TCTATAGCTTCAACCTGAC
1 TCCATTGCAACTTCAGGGATATAAGATTTGATGTC-GTAGCTTCATCTTG-C
* * * * * * * *
21875171 -CCACTGTAACTTTAAGGG-TATAAGATTTGGTTTTGTAGCTTTAATC-TGA
1 TCCATTGCAAC-TTCAGGGATATAAGATTTGATGTCGTAGC-TTCATCTTGC
** * * *
21875220 TATACTGCAACTTCAGGGATATAGGATTTGATGTCATAGCTTCATCTTGC
1 TCCATTGCAACTTCAGGGATATAAGATTTGATGTCGTAGCTTCATCTTGC
* * * * * *
21875270 TTCATTGCAAACTT-AGGGAGATAAAGATTTGCT-TCTGTAGCTTTAATCCT-A
1 TCCATTGC-AACTTCAGGGATAT-AAGATTTGATGTC-GTAGC-TTCATCTTGC
* * *
21875321 TCCATTGTAACTTCAAGGATATAAGATTTGATGTCGTAGCTTCATATTGC
1 TCCATTGCAACTTCAGGGATATAAGATTTGATGTCGTAGCTTCATCTTGC
* *
21875371 TCCATTGTAACTTTAGGGA
1 TCCATTGCAACTTCAGGGA
21875390 GAGATAAAGA
Statistics
Matches: 199, Mismatches: 55, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
49 17 0.09
50 132 0.66
51 44 0.22
52 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (50 bp):
TCCATTGCAACTTCAGGGATATAAGATTTGATGTCGTAGCTTCATCTTGC
Found at i:21875312 original size:101 final size:99
Alignment explanation
Indices: 21875192--21875863 Score: 532
Period size: 101 Copynumber: 6.7 Consensus size: 99
21875182 TTAAGGGTAT
* ** * **
21875192 AAGATTTGGTTTTGTAGCTTTAATCTGATATACTGCAACTTCAGGGATATAGGATTTGATGTCAT
1 AAGATTT-GCTTTGTAGCTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTGT
21875257 AGCTTCATCTTGCTTCATTGCAAACTTAGGGAGATA
65 AGCTTCATCTTGCTTCATTGC-AACTTAGGGAGATA
* ** * * *
21875293 AAGATTTGCTTCTGTAGCTTTAATCCT-ATCCATTGTAACTTCAAGGATATAAGATTTGATGTCG
1 AAGATTTGCTT-TGTAGCTTTAAT-CTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTG
* * *
21875357 TAGCTTCATATTGCTCCATTGTAACTTTAGGGAGAGATA
64 TAGCTTCATCTTGCTTCATTGCAAC-TTA-GG-GAGATA
* * * * * * *
21875396 AAGATTTTCTTTTGTAGTTTTAAT-TCGACCCTCTGCAACTTCAGGG-TATAGGATTTGGTTTTG
1 AAGATTTGC-TTTGTAGCTTTAATCT-GATCCACTACAACTTCAGGGATATAGGATTTGATGTTG
* * * *
21875459 TAGCTTCATCCTACTTTATTGCAACTTAAGAGAGATA
64 TAGCTTCATCTTGCTTCATTGCAACTT-AGGGAGATA
* * * * * *
21875496 AGGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTTTAGCGATATAGGATTTGAAGTTGT
1 AAGATTTGCTTT-GTAGCTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTGT
* * * * *
21875561 AGCTTCATCTTGATCCACTACAACTTCAAGGAGATA
65 AGCTTCATCTTGCTTCATTGCAACTT-AGGGAGATA
* * ** * * * * * *
21875597 AAGATTTACTTTTTTAG-TTTCAATCCAACCCACTACAACTTCAGGGGTGTAGGACTTGGTTTTG
1 AAGATTTGC-TTTGTAGCTTT-AATCTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTG
* *
21875661 TAGCTTCATCTTGC-TCTATTACAACTTTAGAGAGATA
64 TAGCTTCATCTTGCTTC-ATTGCAAC-TTAGGGAGATA
* * ** * * *
21875698 AGGATTTGCTTTCATAGCTACAATCCGATCCACTACAACTTCATGGG-TATAAGATTTGATGTGG
1 AAGATTTGCTTT-GTAGCTTTAATCTGATCCACTACAACTTCA-GGGATATAGGATTTGATGTTG
* * *
21875762 TAGCTTCATCTTGCTTTACTGCAACTTCGGAGAGATA
64 TAGCTTCATCTTGCTTCATTGCAACTTAGG-GAGATA
* * * *
21875799 AAGATTTACTATTGTAG-TTATAGTTTGATCC-CTACAACTTCAGGGATATAGGATTTAATGTTG
1 AAGATTTGCT-TTGTAGCTT-TAATCTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTG
21875862 TA
64 TA
21875864 CTGATCCCTC
Statistics
Matches: 448, Mismatches: 99, Indels: 49
0.75 0.17 0.08
Matches are distributed among these distances:
99 6 0.01
100 81 0.18
101 271 0.60
102 49 0.11
103 39 0.09
104 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (99 bp):
AAGATTTGCTTTGTAGCTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGATGTTGTA
GCTTCATCTTGCTTCATTGCAACTTAGGGAGATA
Found at i:21875535 original size:51 final size:50
Alignment explanation
Indices: 21875480--21875738 Score: 143
Period size: 51 Copynumber: 5.1 Consensus size: 50
21875470 TACTTTATTG
21875480 CAACTTAAGAGAGATAAGGATTTGCTTTCATAGCTTTAATCCGATCCACTA
1 CAACTTAAG-GAGATAAGGATTTGCTTTCATAGCTTTAATCCGATCCACTA
* * ** * * *
21875531 CAACTTTA-GCGATATAGGATTTGAAGTT-GTAGC-TTCATCTTGATCCACTA
1 CAACTTAAGGAGATA-AGGATTTG-CTTTCATAGCTTTAATC-CGATCCACTA
* * ** * *
21875581 CAACTTCAAGGAGATAAAGATTTACTTTTTTAG-TTTCAATCCAACCCACTA
1 CAACTT-AAGGAGATAAGGATTTGCTTTCATAGCTTT-AATCCGATCCACTA
* * * * * ** * * * * *
21875632 CAACTTCAGG-GGTGTAGGACTTGGTTTTGTAGC-TTCATCTTGCTCTATTA
1 CAACTTAAGGAGAT-AAGGATTTGCTTTCATAGCTTTAATC-CGATCCACTA
* **
21875682 CAACTTTAGAGAGATAAGGATTTGCTTTCATAGCTACAATCCGATCCACTA
1 CAACTTAAG-GAGATAAGGATTTGCTTTCATAGCTTTAATCCGATCCACTA
21875733 CAACTT
1 CAACTT
21875739 CATGGGTATA
Statistics
Matches: 147, Mismatches: 47, Indels: 28
0.66 0.21 0.13
Matches are distributed among these distances:
49 15 0.10
50 58 0.39
51 61 0.41
52 13 0.09
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (50 bp):
CAACTTAAGGAGATAAGGATTTGCTTTCATAGCTTTAATCCGATCCACTA
Found at i:21875707 original size:202 final size:200
Alignment explanation
Indices: 21875227--21875817 Score: 659
Period size: 202 Copynumber: 2.9 Consensus size: 200
21875217 TGATATACTG
* * * ** *
21875227 CAACTTCAGGGATATAGGATTTGATGTCATAGCTTCATCTTGCTTCATTGCAAAC-TTAGGGAGA
1 CAACTTCAGGG-TATAGGACTTGGTTTTGTAGCTTCATCTTGCTT-ATTGC-AACTTTAGAGAGA
* * * * **
21875291 TAAAGATTTGC-TTCTGTAGCTTTAATCCTATCCATTGTAACTTCAAGGATATAAGATTTGATGT
63 TAAGGATTTGCTTTC-ATAGCTTTAATCCGATCCACTACAACTT-AAGGATATAAGATTTGATGT
* * * * * *
21875355 CGTAGCTTCATATTGCTCCATTGTAACTTTAGGGAGAGATAAAGATTTTCTTTTGTAGTTTTAAT
126 CGTAGCTTCATCTTGCTCCACTGCAACTTCA-GGAGAGATAAAGATTTACTTTTGTAGTTTCAAT
* * * *
21875420 TCGACCCTCTG
190 CCAACCCACTA
* * * *
21875431 CAACTTCAGGGTATAGGATTTGGTTTTGTAGCTTCATCCTACTTTATTGCAACTTAAGAGAGATA
1 CAACTTCAGGGTATAGGACTTGGTTTTGTAGCTTCATCTTGC-TTATTGCAACTTTAGAGAGATA
* * * *
21875496 AGGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTTTAGCGATATAGGATTTGAAGTTGT
65 AGGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTTAAG-GATATAAGATTTGATGTCGT
* * * *
21875561 AGCTTCATCTTGATCCACTACAACTTCAAG-GAGATAAAGATTTACTTTTTTAGTTTCAATCCAA
129 AGCTTCATCTTGCTCCACTGCAACTTCAGGAGAGATAAAGATTTACTTTTGTAGTTTCAATCCAA
21875625 CCCACTA
194 CCCACTA
* *
21875632 CAACTTCAGGGGTGTAGGACTTGGTTTTGTAGCTTCATCTTGCTCTATTACAACTTTAGAGAGAT
1 CAACTTCA-GGGTATAGGACTTGGTTTTGTAGCTTCATCTTGCT-TATTGCAACTTTAGAGAGAT
** * * *
21875697 AAGGATTTGCTTTCATAGCTACAATCCGATCCACTACAACTTCATGGGTATAAGATTTGATGTGG
64 AAGGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTT-AAGGATATAAGATTTGATGTCG
** *
21875762 TAGCTTCATCTTGCTTTACTGCAACTTC-GGAGAGATAAAGATTTACTATTGTAGTT
128 TAGCTTCATCTTGCTCCACTGCAACTTCAGGAGAGATAAAGATTTACTTTTGTAGTT
21875818 ATAGTTTGAT
Statistics
Matches: 326, Mismatches: 53, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
201 44 0.13
202 156 0.48
203 110 0.34
204 16 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (200 bp):
CAACTTCAGGGTATAGGACTTGGTTTTGTAGCTTCATCTTGCTTATTGCAACTTTAGAGAGATAA
GGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTTAAGGATATAAGATTTGATGTCGTAG
CTTCATCTTGCTCCACTGCAACTTCAGGAGAGATAAAGATTTACTTTTGTAGTTTCAATCCAACC
CACTA
Found at i:21875750 original size:51 final size:49
Alignment explanation
Indices: 21875492--21875755 Score: 167
Period size: 50 Copynumber: 5.2 Consensus size: 49
21875482 ACTTAAGAGA
* * *
21875492 GATAAGGATTTGCTTTCATAGCTTTAATCCGATCCACTACAACTTTAGC
1 GATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTACAACTTCAGG
** * *
21875541 GATATAGGATTTGAAGTT-GTAGCTTC-ATCTTGATCCACTACAACTTCAAGG
1 GATA-AGGATTTG-CTTTCATAGCTTCAATC-CGATCCACTACAACTTC-AGG
* * ** * * *
21875592 AGATAAAGATTTACTTTTTTAGTTTCAATCCAACCCACTACAACTTCAGG
1 -GATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTACAACTTCAGG
* * * * ** * * * * *
21875642 GGTGTAGGACTTGGTTTTGTAGCTTC-ATCTTGCTCTATTACAACTTTAGAG
1 GAT-AAGGATTTGCTTTCATAGCTTCAATC-CGATCCACTACAACTTCAG-G
*
21875693 AGATAAGGATTTGCTTTCATAGCTACAATCCGATCCACTACAACTTCATGG
1 -GATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTACAACTTCA-GG
21875744 GTATAA-GATTTG
1 G-ATAAGGATTTG
21875756 ATGTGGTAGC
Statistics
Matches: 158, Mismatches: 43, Indels: 27
0.69 0.19 0.12
Matches are distributed among these distances:
49 12 0.08
50 68 0.43
51 65 0.41
52 13 0.08
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (49 bp):
GATAAGGATTTGCTTTCATAGCTTCAATCCGATCCACTACAACTTCAGG
Found at i:21900897 original size:18 final size:17
Alignment explanation
Indices: 21900872--21900905 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21900862 TATTCCTTTT
21900872 CTAACTTTTATTGATTA
1 CTAACTTTTATTGATTA
*
21900889 CTAATCTTTTGTTGATT
1 CTAA-CTTTTATTGATT
21900906 TTCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTAACTTTTATTGATTA
Found at i:21906472 original size:24 final size:25
Alignment explanation
Indices: 21906436--21906483 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
21906426 TGTCATTGCA
*
21906436 ATTTTTCTATTAATTT-TTGTCTTTT
1 ATTTTACTATTAATTTGTT-TCTTTT
21906461 ATTTTACT-TTAATTTGTTTCTTT
1 ATTTTACTATTAATTTGTTTCTTT
21906484 AGTTTTTGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.71
Consensus pattern (25 bp):
ATTTTACTATTAATTTGTTTCTTTT
Found at i:21908215 original size:19 final size:20
Alignment explanation
Indices: 21908193--21908231 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
21908183 ATTGAAGTAG
21908193 AAGAAGAGAA-AAGAAGAAA
1 AAGAAGAGAAGAAGAAGAAA
21908212 AAGAAGAGAAGGAAGAAGAA
1 AAGAAGAGAA-GAAGAAGAA
21908232 GACGTTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
AAGAAGAGAAGAAGAAGAAA
Found at i:21913532 original size:52 final size:52
Alignment explanation
Indices: 21913451--21913638 Score: 288
Period size: 52 Copynumber: 3.6 Consensus size: 52
21913441 GTAAATGCAA
21913451 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
*
21913503 AAGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * * *
21913555 GAGGTCTGATGACTATGTGTCACCGTGAGCATATGAATCCTTCT-CGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTT-TACGGATTAT
* **
21913607 GAGGTTTGATGACTATGTGTCATCGTGAGTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTAT
21913639 CAAATGAGAA
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
52 125 0.99
53 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (52 bp):
AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
Found at i:21915585 original size:21 final size:21
Alignment explanation
Indices: 21915561--21915610 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
21915551 GAGACAATAT
21915561 TACCGATACAAGT-ATGACTTC
1 TACCGATACAAGTCAT-ACTTC
* * *
21915582 TACCGAAACATGTCATCCTTC
1 TACCGATACAAGTCATACTTC
21915603 TACCGATA
1 TACCGATA
21915611 TTAAAAACTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (21 bp):
TACCGATACAAGTCATACTTC
Found at i:21919257 original size:24 final size:25
Alignment explanation
Indices: 21919205--21919258 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
21919195 TCATAAACTA
*
21919205 AAAATAGAAAGAAAAATACAAAAAT
1 AAAATAGAAAGAAAAATACAAAAAG
*
21919230 AAAATA-AAATAAAAATA-AATAAAG
1 AAAATAGAAAGAAAAATACAA-AAAG
21919254 AAAAT
1 AAAAT
21919259 CAGATCTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.08
24 18 0.69
25 6 0.23
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (25 bp):
AAAATAGAAAGAAAAATACAAAAAG
Found at i:21923446 original size:25 final size:25
Alignment explanation
Indices: 21923395--21923467 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 25
21923385 AATAAATAAC
* *
21923395 AAAT-AAATAAT-AAATATTAATAT
1 AAATAAAATAATAAAATAATAAAAT
* * *
21923418 ATA-AAAATGATAGAAT-ATAAAAT
1 AAATAAAATAATAAAATAATAAAAT
21923441 AAATAAAATAATAAAATAATAAAAT
1 AAATAAAATAATAAAATAATAAAAT
21923466 AA
1 AA
21923468 TAATAAGTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
23 15 0.39
24 14 0.37
25 9 0.24
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (25 bp):
AAATAAAATAATAAAATAATAAAAT
Found at i:21923455 original size:8 final size:8
Alignment explanation
Indices: 21923399--21923470 Score: 69
Period size: 8 Copynumber: 9.1 Consensus size: 8
21923389 AATAACAAAT
21923399 AAATAAT-
1 AAATAATA
*
21923406 AAATATTA
1 AAATAATA
*
21923414 ATAT-ATAA
1 AAATAAT-A
*
21923422 AAATGATA
1 AAATAATA
*
21923430 GAAT-ATA
1 AAATAATA
21923437 AAATAAATA
1 AAAT-AATA
21923446 AAATAATA
1 AAATAATA
21923454 AAATAATA
1 AAATAATA
21923462 AAATAATA
1 AAATAATA
21923470 A
1 A
21923471 TAAGTGGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
7 13 0.24
8 32 0.59
9 9 0.17
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (8 bp):
AAATAATA
Found at i:21923709 original size:20 final size:21
Alignment explanation
Indices: 21923679--21923722 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
21923669 GGGTAAAATT
21923679 AAAATAAATT-AAAAGAT-AA
1 AAAATAAATTAAAAAGATGAA
21923698 AAAATGAAATTAAAAAGATGAA
1 AAAAT-AAATTAAAAAGATGAA
21923720 AAA
1 AAA
21923723 GGTGGAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.23
20 5 0.23
21 7 0.32
22 5 0.23
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (21 bp):
AAAATAAATTAAAAAGATGAA
Found at i:21928121 original size:25 final size:24
Alignment explanation
Indices: 21928062--21928136 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
21928052 AAATGACATA
*
21928062 AGAA-ATAAATAACAAATAAATAAT
1 AGAATATAAATAATAAA-AAATAAT
* *
21928086 -GAATATTAATATATAAAAAATGAT
1 AGAATATAAATA-ATAAAAAATAAT
21928110 AGAATATAAATAAATAAAATAATAAT
1 AGAATATAAAT-AATAAAA-AATAAT
21928136 A
1 A
21928137 AGAGGAATGA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.07
24 12 0.29
25 19 0.46
26 7 0.17
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (24 bp):
AGAATATAAATAATAAAAAATAAT
Found at i:21928374 original size:21 final size:21
Alignment explanation
Indices: 21928341--21928385 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
21928331 GGGTAAAATT
*
21928341 AAAAT-AATTTAAAAGATAAA
1 AAAATAAATTAAAAAGATAAA
21928361 AAAATGAAATTAAAAAGATAAA
1 AAAAT-AAATTAAAAAGATAAA
21928383 AAA
1 AAA
21928386 GGTGGAAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
22 17 0.77
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (21 bp):
AAAATAAATTAAAAAGATAAA
Found at i:21936981 original size:24 final size:24
Alignment explanation
Indices: 21936954--21937009 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
21936944 CGAACTCAAA
21936954 ACTCGAATCGAATTATTCGAGTTG
1 ACTCGAATCGAATTATTCGAGTTG
21936978 ACTCGAATCGAATTATTCGAGTTG
1 ACTCGAATCGAATTATTCGAGTTG
21937002 ACTCGAAT
1 ACTCGAAT
21937010 AATTCAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (24 bp):
ACTCGAATCGAATTATTCGAGTTG
Found at i:21937547 original size:29 final size:28
Alignment explanation
Indices: 21937480--21937553 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
21937470 TTTAATAGAT
* *
21937480 TATATTTTTATAATTGTTAAAGGATTAAA
1 TATAATTTTAT-ATTTTTAAAGGATTAAA
*
21937509 TCA-AATTTTTATATTTTTAAAGTATTAAAA
1 T-ATAA-TTTTATATTTTTAAAGGATT-AAA
21937539 TATAATTTTAT-TTTT
1 TATAATTTTATATTTT
21937554 ATTAATTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
28 4 0.11
29 21 0.55
30 13 0.34
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (28 bp):
TATAATTTTATATTTTTAAAGGATTAAA
Found at i:21947786 original size:21 final size:21
Alignment explanation
Indices: 21947760--21947812 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
21947750 TTTTAAACCC
21947760 ACCAAACCCATATTCATTTAA
1 ACCAAACCCATATTCATTTAA
*
21947781 ACCAAACCCAAATTCATTTAA
1 ACCAAACCCATATTCATTTAA
21947802 ACCAAACCCAT
1 ACCAAACCCAT
21947813 TTAAACCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (21 bp):
ACCAAACCCATATTCATTTAA
Found at i:21947825 original size:20 final size:20
Alignment explanation
Indices: 21947800--21947866 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
21947790 AAATTCATTT
21947800 AAACCAAACCCATTTAAACC
1 AAACCAAACCCATTTAAACC
21947820 AAACCAAACCCATTTAAACC
1 AAACCAAACCCATTTAAACC
* *
21947840 TAACCAAACCCATTTGAACC
1 AAACCAAACCCATTTAAACC
21947860 AAACCAA
1 AAACCAA
21947867 TTGAACCAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.15
Consensus pattern (20 bp):
AAACCAAACCCATTTAAACC
Found at i:21947844 original size:15 final size:15
Alignment explanation
Indices: 21947795--21947824 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21947785 AACCCAAATT
21947795 CATTTAAACCAAACC
1 CATTTAAACCAAACC
21947810 CATTTAAACCAAACC
1 CATTTAAACCAAACC
21947825 AAACCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (15 bp):
CATTTAAACCAAACC
Found at i:21947872 original size:14 final size:15
Alignment explanation
Indices: 21947841--21947875 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
21947831 ATTTAAACCT
*
21947841 AACCAAACCCATTTG
1 AACCAAACCCAATTG
21947856 AACCAAA-CCAATTG
1 AACCAAACCCAATTG
21947870 AACCAA
1 AACCAA
21947876 GTCCAACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.49, C:0.31, G:0.06, T:0.14
Consensus pattern (15 bp):
AACCAAACCCAATTG
Found at i:21947945 original size:11 final size:11
Alignment explanation
Indices: 21947921--21947957 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
21947911 TTGACCGGCA
21947921 TTGACCGA-CG
1 TTGACCGACCG
*
21947931 TTGATCGACCG
1 TTGACCGACCG
21947942 TTGACCGACCG
1 TTGACCGACCG
21947953 TTGAC
1 TTGAC
21947958 TTTGACTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.24
Consensus pattern (11 bp):
TTGACCGACCG
Found at i:21947970 original size:13 final size:13
Alignment explanation
Indices: 21947959--21948033 Score: 87
Period size: 13 Copynumber: 5.6 Consensus size: 13
21947949 ACCGTTGACT
21947959 TTGACTGTTGACCG
1 TTGACT-TTGACCG
*
21947973 TTGACTTTGATCG
1 TTGACTTTGACCG
** *
21947986 TTGACCACTGACTG
1 TTGA-CTTTGACCG
21948000 TTGACTTTGACCG
1 TTGACTTTGACCG
*
21948013 TTGATTTTGACCG
1 TTGACTTTGACCG
21948026 TTGACTTT
1 TTGACTTT
21948034 TTTCGAAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
13 35 0.70
14 15 0.30
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (13 bp):
TTGACTTTGACCG
Found at i:21947973 original size:20 final size:20
Alignment explanation
Indices: 21947948--21948030 Score: 98
Period size: 20 Copynumber: 4.2 Consensus size: 20
21947938 ACCGTTGACC
21947948 GACCGTTGACTTTGACTGTT
1 GACCGTTGACTTTGACTGTT
21947968 GACCGTTGACTTTGA-TCGTT
1 GACCGTTGACTTTGACT-GTT
**
21947988 GACCACTGACTGTTGACT-TT
1 GACCGTTGACT-TTGACTGTT
* *
21948008 GACCGTTGATTTTGACCGTT
1 GACCGTTGACTTTGACTGTT
21948028 GAC
1 GAC
21948031 TTTTTTCGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
19 6 0.11
20 42 0.79
21 4 0.08
22 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (20 bp):
GACCGTTGACTTTGACTGTT
Found at i:21947997 original size:27 final size:26
Alignment explanation
Indices: 21947967--21948033 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
21947957 CTTTGACTGT
*
21947967 TGACCGTTGACTTTGATCGTTGACCAC
1 TGACCGTTGACTTTGACCGTTGA-CAC
* ***
21947994 TGACTGTTGACTTTGACCGTTGATTT
1 TGACCGTTGACTTTGACCGTTGACAC
21948020 TGACCGTTGACTTT
1 TGACCGTTGACTTT
21948034 TTTCGAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 13 0.38
27 21 0.62
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.40
Consensus pattern (26 bp):
TGACCGTTGACTTTGACCGTTGACAC
Found at i:21948010 original size:40 final size:40
Alignment explanation
Indices: 21947954--21948030 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
21947944 GACCGACCGT
*
21947954 TGACTTTGACTGTTGACCGTTGACTTTGATCGTTGACCAC
1 TGACTTTGACTGTTGACCGTTGACTTTGACCGTTGACCAC
*
21947994 TGACTGTTGACT-TTGACCGTTGATTTTGACCGTTGAC
1 TGACT-TTGACTGTTGACCGTTGACTTTGACCGTTGAC
21948031 TTTTTTCGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 28 0.82
41 6 0.18
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (40 bp):
TGACTTTGACTGTTGACCGTTGACTTTGACCGTTGACCAC
Found at i:21949087 original size:3 final size:3
Alignment explanation
Indices: 21949079--21949124 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
21949069 TATTCTATTC
21949079 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21949125 TTGGGATGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:21951738 original size:20 final size:20
Alignment explanation
Indices: 21951687--21951739 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
21951677 GGGGGGGGGG
21951687 GGGTGTGGGTGTGGATGAGT
1 GGGTGTGGGTGTGGATGAGT
* *** * *
21951707 GCGTGCATGTGTGGGTGGGT
1 GGGTGTGGGTGTGGATGAGT
21951727 GGGTGTGGGTGTG
1 GGGTGTGGGTGTG
21951740 TGTGTGTGCG
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.06, C:0.04, G:0.60, T:0.30
Consensus pattern (20 bp):
GGGTGTGGGTGTGGATGAGT
Found at i:21951886 original size:20 final size:20
Alignment explanation
Indices: 21951762--21951889 Score: 107
Period size: 20 Copynumber: 6.4 Consensus size: 20
21951752 CTTGTGTTCG
*
21951762 GTGCCCCTAATTGCACATCTA
1 GTGCCCCTATTTGCACATC-A
* *
21951783 -TGCCCCTATTTGCACTTCG
1 GTGCCCCTATTTGCACATCA
* * * *
21951802 GTACCCCTGTTTTCACATCG
1 GTGCCCCTATTTGCACATCA
* **
21951822 GTGCCCCTATTTTCATTTCA
1 GTGCCCCTATTTGCACATCA
* *
21951842 GTGCCCTTATTTGCATAT-A
1 GTGCCCCTATTTGCACATCA
21951861 TGTGCCCCTATTTGCACATCA
1 -GTGCCCCTATTTGCACATCA
*
21951882 ATGCCCCT
1 GTGCCCCT
21951890 GGTTTTACTT
Statistics
Matches: 86, Mismatches: 18, Indels: 7
0.77 0.16 0.06
Matches are distributed among these distances:
19 1 0.01
20 84 0.98
21 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.14, T:0.36
Consensus pattern (20 bp):
GTGCCCCTATTTGCACATCA
Found at i:21967488 original size:18 final size:16
Alignment explanation
Indices: 21967449--21967491 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
21967439 GTTGACGTTT
*
21967449 TTATTTTTTTTCTTTC
1 TTATTTTTTTTCTTCC
21967465 TT-TTTTTTTTCTTCC
1 TTATTTTTTTTCTTCC
21967480 TTCAATTTTTTT
1 TT--ATTTTTTT
21967492 ATCATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 14 0.61
16 2 0.09
18 7 0.30
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTTTTTTCTTCC
Found at i:21967489 original size:33 final size:33
Alignment explanation
Indices: 21967451--21967519 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
21967441 TGACGTTTTT
* * *
21967451 ATTTTTTT-TCTTTCTTTTTTTTTTCTTCCTTCA
1 ATTTTTTTATCATT-TTTTTCTTTTCTTCCCTCA
21967484 ATTTTTTTATCATTTTTTTCTTTTCTTCCCTCA
1 ATTTTTTTATCATTTTTTTCTTTTCTTCCCTCA
21967517 ATT
1 ATT
21967520 CAAGTTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (33 bp):
ATTTTTTTATCATTTTTTTCTTTTCTTCCCTCA
Found at i:21968526 original size:69 final size:67
Alignment explanation
Indices: 21968446--21968577 Score: 192
Period size: 69 Copynumber: 1.9 Consensus size: 67
21968436 ATTCGAATAA
* * * *
21968446 AAAAGGCAAAATTACGTCGTTTTGATAAATATTTACTTTTTAAAAGTTAAAAGTCAAAACCATTA
1 AAAAGGCAAAATTACGTAGTTTTAATAAATATTTACTTATT--AAGTTAAAAGGCAAAACCATTA
21968511 AGTT
64 AGTT
* *
21968515 AAAAGGTAAAATTACGTAGTTTTAATAAATGTTTACTTATTAAGTTAAAAGGCAAAACCATTA
1 AAAAGGCAAAATTACGTAGTTTTAATAAATATTTACTTATTAAGTTAAAAGGCAAAACCATTA
21968578 TATTGTTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 21 0.37
69 36 0.63
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (67 bp):
AAAAGGCAAAATTACGTAGTTTTAATAAATATTTACTTATTAAGTTAAAAGGCAAAACCATTAAG
TT
Found at i:21969541 original size:214 final size:216
Alignment explanation
Indices: 21969075--21973244 Score: 4323
Period size: 216 Copynumber: 19.4 Consensus size: 216
21969065 TTTTTGGTTT
* * * * * * *
21969075 CTTAACGTGTTCAAGACGATCCATTCCTTCGTGCAATTTTCTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * * *
21969136 ACATCCTATGTTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
**
21969201 TTTACGTGAGAATTGTTTCTCTCTTTATTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
*
21969266 CTTATTTTTTAACTTT-TATTC
196 GTTATTTTTTAA-TTTCTATTC
* *
21969287 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATTTTTTGAACATTCCATGCTC-GGAAATT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAA-T
* * * *
21969351 CGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAACTTTTAGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
21969416 AATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTGTTAAACTTTCA
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCAAACTTGTCAAACTTTTA
* * * * *
21969477 TGAGCTCTTTTATAATTTCTATTG
193 CGAGTTATTTTTTAATTTCTATTC
* ** * * * *
21969501 CATAAAGTATTCAAGTGGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATGCTCTGAAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT
* * * * * * * * ***
21969565 CGTACCATTTGGTCGATACAATTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAGTTTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * ** *
21969630 ATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
* *
21969695 AGTTATATTTTAACTTT-GATTC
195 AGTTATTTTTTAA-TTTCTATTC
* * *
21969717 CTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAATTTTCTGTACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * *
21969782 GCATCATTTGGTCTAAATTGTTTGTCATTTTATACACAAGTTTTGGTC-TTGAACT-AAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * **
21969845 TTTACGTGAGAATTGTTTTTCGCTTTGTTCTTGGACGAACTTCCGTACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* *
21969910 GTTATTTTTTAACTTCGATTC
196 GTTATTTTTTAATTTCTATTC
* * * * * *
21969931 CTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGCAATTTTCTAAACATTTCGTGCTCGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * *
21969996 GCATTATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAATTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *** * *
21970061 TTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACTTTTGAACTTATCAAACTTTTATGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * * * *
21970126 GTTCTTTTATAACTTCTGTTG
196 GTTATTTTTTAATTTCTATTC
* * * * *
21970147 CTTAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCGAACAGTCCATGCTGGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT
* * * * *
21970211 CGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAATTTTGGTCTTTGAATTAAGATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * * * * *
21970276 ATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTTTCGAACTCGTCAAACTTATATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
* * *
21970341 AGTTCTTTTATAGCATTT-TGGTTC
195 AGTTATTTTTTA--ATTTCT-ATTC
* * * * * *
21970365 CATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * ** * *
21970426 GCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAATGAGTTTTGGTCTTTAAATTAAAAATTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *
21970491 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCTAAATTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
*
21970556 CTTATTTTTTAACTTT-TATTC
196 GTTATTTTTTAA-TTTCTATTC
* * *
21970577 CTTAAAGTATTCAAGAAGATCCATTCCTACTAGTAATTTTTTGAACATTCCATTG-TCGTGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCA-TGCTCGGGAAAT
* * * *
21970641 CGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAAACTTTTAGTCTTTGAATT--AAACT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACT
* * *
21970704 TAGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTG-CTAAACTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCAAACTTGTC-AAACTTT
* * * * *
21970765 TATGAGCTCTTTTATAATTTCTATTG
191 TACGAGTTATTTTTTAATTTCTATTC
* * * * * * *
21970791 CATAAAGAATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATGATCTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT
* * * * * * ***
21970855 CGTACCATTTGGTC-AATACAATTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAGTTT
65 CGCATCATTTGGTCTAA-ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * ** *
21970919 TATTAATGTCAGAATTG-TTCGTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTA
129 TATTTACGTGAGAATTGTTTC-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTA
* *
21970983 CGAGTTATTTTTTAACTTCGATTC
193 CGAGTTATTTTTTAATTTCTATTC
* * *
21971007 CTTAAAGTATTCAAGAATG-TCCATTCCTAAGAGCAATTTTCT-ATACATTCCATACTCGGGAAA
1 CTTAAAGTATTCAAGAA-GATCCATTCCTACGAGCAATTTTTTGA-ACATTCCATGCTCGGGAAA
* *
21971070 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTATACACAAGTTTTGGTC-TTGAATT--AAACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * **
21971132 TATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGTCAAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTAC
* *
21971197 GAGTTATTTTTTAACTTCGATTC
194 GAGTTATTTTTTAATTTCTATTC
* * * * * *
21971220 CTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGCAGTTTTCTAAACATTTCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * *
21971285 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGTCATTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *** * *
21971350 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAGCTTTTGAACTTCTCAAACTTTTACTA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * ** * *
21971415 GTTCTTTCATTGCTTTTTGGTTC
196 GTTATTT-TTTAATTTCT-ATTC
* * * * * *
21971438 CTTAATGTATTCAAGACGATCCATTCCTTCGTGCAATTTTCTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * * *
21971499 GCATCCTATAGTCTAAATAGTTTGTCATTTTGCAAACGAGTTTTGGTCTTTAAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *
21971564 TTTATGTGAGAATTGTTTCTATCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
*
21971629 CTTATTTTTTAACTTT-TATTC
196 GTTATTTTTTAA-TTTCTATTC
* *
21971650 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGCAA-TTTTTGAACATTCCATGCTCGTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * **
21971714 GCATCATTTGGTCTAAATAGTTTTTCATTATGTAAAAAAACTTT-GTCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
21971778 GTTA-GTCAGAATTGTTTCTATCTTGGTTATTGG-TGTAACATT-CAAACCTG-CTAAACTTTTA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCAAACTTGTC-AAACTTTTA
* * * * *
21971839 TGAGCTCTTTTATAATTTCTATTG
193 CGAGTTATTTTTTAATTTCTATTC
* * * ** **
21971863 CATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCAAACATTCCATGCTTTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT
* * * * * * * ***
21971927 CGTACCATTTGGTCGATACAATTTGTCAATTTT-T-AATAAGTTTTGGTCTTTGAATTAAAGTTT
65 CGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
21971990 TGTTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCATACTTATCAAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTAC
* *
21972055 GAGTTATTTTTTAACTTCGATTC
194 GAGTTATTTTTTAATTTCTATTC
* *
21972078 CTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
*
21972143 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
*** * *
21972208 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACCTATCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * ** * *
21972273 GTTCTTTCATTGCTTTTTGGTTC
196 GTTATTT-TTTAATTTCT-ATTC
* * * * * * *
21972296 CTTAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTCTG-A-A--CCATGCTCTGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * *
21972357 GCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAGTTTTAGTCTTT--A--AAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
*
21972418 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
*
21972483 CTTATTTTTTAACTTT-TATTC
196 GTTATTTTTTAA-TTTCTATTC
* * * *
21972504 CTTAAAGTATTCAAGAAGATCCATCCCTACCAGCAATTTTTTGAACATTCCTTGCTCGTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * *
21972569 ACATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAAACTTTTAGTCTTTGAATTAAAAACTT
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
21972634 AGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTG-CTAAACTTTT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCAAACTTGTC-AAACTTTT
* * * * *
21972695 ATGAGCTCTTTTATAATTTCTATTG
192 ACGAGTTATTTTTTAATTTCTATTC
* * * * * *
21972720 CATAAAGTATTCTAGACGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATGCTCTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT
* * * * * * * * *
21972784 CGTACCATTTGGTCGATACAATTTGTCAATTTT-TAAATAAGTTCTGG-CTTTGAATTAAAATCT
65 CGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * ** * *
21972847 TATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACATTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTAC
* *
21972912 GAGTTATTTTTTAACTTCGATTC
194 GAGTTATTTTTTAATTTCTATTC
* * * *
21972935 CTTAAAGTATTCAAGAAGATCCATTTCTAAGAGCAATTTTCTAAACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
*
21973000 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* *
21973065 TTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * *
21973130 CTTATTTTTTAACTTCGATTC
196 GTTATTTTTTAATTTCTATTC
* * * *
21973151 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATGTTTTGAACATTCCATGCTCGGGAATTC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
* *
21973216 ACATCATTTGGTCTAAATAGTTTGCCATT
66 GCATCATTTGGTCTAAATAGTTTGTCATT
21973245 AATTAAAAAC
Statistics
Matches: 3254, Mismatches: 602, Indels: 200
0.80 0.15 0.05
Matches are distributed among these distances:
208 39 0.01
209 4 0.00
210 77 0.02
211 5 0.00
212 158 0.05
213 337 0.10
214 918 0.28
215 417 0.13
216 1117 0.34
217 61 0.02
218 121 0.04
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
GTTATTTTTTAATTTCTATTC
Found at i:21969967 original size:430 final size:431
Alignment explanation
Indices: 21969075--21985426 Score: 15580
Period size: 430 Copynumber: 38.2 Consensus size: 431
21969065 TTTTTGGTTT
* * * * * *
21969075 CTTAACGTGTTCAAGACGATCCATTCCTTCGTGCAA-TTTTCTG-A-A--CCATGCTCGGGAAAA
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * * * * *
21969135 CACATCCTATGTTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** *
21969200 ATTTACGTGAGAATTGTTTCTCTCTTTATTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * *
21969265 ACTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATTTTTTG
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* * *
21969330 AACATTCCATGCTC-GGAAATTCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAACTT
259 AACATTCCATGCTCGGGAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * *
21969394 TTAGTCTTTGAATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * * * *
21969456 TT-CAAACTTGTTAAACTTTCATGAGCTCTTTTATAATTTCTATTG
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* ** * * *
21969501 CATAAAGTATTCAAGTGGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATGCTCTGAAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * * * ***
21969565 CGTACCATTTGGTCGATACAATTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAGTTTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21969630 ATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * *
21969695 AGTTATATTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAATTTTCTG
195 AGTTCT-TTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* * * *
21969760 TACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATTGTTTGTCATTTTATACACAAGTTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
21969825 TGGTC-TTGAACT-AAAACTTATTTACGTGAGAATTGTTTTTCGCTTTGTTCTTGGACGAACTTC
324 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
*
21969888 CGTACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
389 CGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21969931 CTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGCAA-TTTTCTAAACATTTCGTGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * * *
21969995 CGCATTATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAATTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * ** * *
21970060 ATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACTTTTGAACTTATCAAACTTTTATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* *
21970125 AGTTCTTTTATAACTTCTG-TTGCTTAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATTTT-
195 AGTTCTTTT-TAACTT-TGATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATTTTC
* * * * *
21970187 TCGAACAGTCCATGCTGGGGAAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAA
257 T-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * * *
21970252 TTTTGGTCTTTGAATTAAGATCTTATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * * *
21970317 TTTCGAACTCGTCAAACTTATATGAGTTCTTTTATAGCATTTTGGTTC
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTA--ACTTCGATTC
* * * * * * *
21970365 CATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * ** * *
21970426 GCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAATGAGTTTTGGTCTTTAAATTAAAAATTTA
66 GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* ** *
21970491 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCTAAATTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
21970556 CTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTACTAGTAATTTTTTGA
196 GTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTGA
* * * *
21970621 ACATTCCATTG-TCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAAACTT
260 ACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTT
* * * *
21970685 TTAGTCTTTGAATT--AAACTTAGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * *
21970746 TT-CAAACTTG-CTAAACTTTTATGAGCTCTTTTATAATTTCTATTG
386 TTCCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * * *
21970791 CATAAAGAATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATGATCTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * ***
21970855 CGTACCATTTGGTC-AATACAATTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAGTTT
65 CGCATCATTTGGTCTAA-ATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
21970919 TATTAATGTCAGAATTG-TTCGTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTA
129 TATTTACGTGAGAATTGTTTC-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * *
21970983 CGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAATG-TCCATTCCTAAGAGCAATTTT
193 CGAGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAG-ACGATCCATTCCTACGAGCAATTTT
* * *
21971047 CT-ATACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATACACAA
256 CTGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
21971111 GTTTTGGTC-TTGAATT--AAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAA
320 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
21971173 CTTCCGTACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
385 CTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21971220 CTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGC-AGTTTTCTAAACATTTCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * *
21971284 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGTCATTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * ** * *
21971349 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAGCTTTTGAACTTCTCAAACTTTTACT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
21971414 AGTTCTTTCATT-GCTTTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGTGCAATTTT
195 AGTTCTTT--TTAAC--TTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTT
* * * * * *
21971478 CTG-A-A--CCATGCTCGGGAAAACGCATCCTATAGTCTAAATAGTTTGTCATTTTGCAAACGAG
256 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
21971539 TTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTATCTTTGTTCTTGGACGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * **
21971604 TTCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTTTATTC
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* *
21971650 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGCAATTTTT-GAACATTCCATGCTCGTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * **
21971714 GCATCATTTGGTCTAAATAGTTTTTC-ATTATGTAAAAAAACTTT-GTCTTTGAATTAAAAACTT
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21971777 AGTTA-GTCAGAATTGTTTCTATCTTGGTTATTGG-TGTAACATT-CAAACCTG-CTAAACTTTT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTC-AAACTTTT
* * * * * *
21971838 ATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATT
192 ACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATT
* ** * * * * * *
21971901 TT-TCAAACATTCCATGCTTTGGAAATCGTACCATTTGGTCGATACAATTTGTCAATTTT-T-AA
254 TTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAA
* *** * * * * * *
21971963 TAAGTTTTGGTCTTTGAATTAAAGTTTTGTTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGAT
317 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
21972028 GAACTTCC-ATACTTATCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
382 GAACTTCCGA-ACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
*
21972078 CTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* *
21972142 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** * *
21972207 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACCTATCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
21972272 AGTTCTTTCATT-GCTTTTTGGTTCCTTAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTT
195 AGTTCTTT--TTAAC--TTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTT
* * * * * *
21972336 CTG-A-A--CCATGCTCTGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAG
256 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
21972397 TTTTAGTCTTT--A--AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * **
21972458 TTCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTTTATTC
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21972504 CTTAAAGTATTCAAGAAGATCCATCCCTACCAGCAATTTTTTGAACATTCCTTGCTCGTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
21972569 ACATCATTTGGTCTAAATAGTTTGTC-ATTATGTAAAAAAACTTTTAGTCTTTGAATTAAAAACT
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGT-AAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * *
21972633 TAGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTG-CTAAACTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTC-AAACTTT
* * * * * * *
21972694 TATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCTAGACGATCTATTCC-ATCGAGCAAT
191 TACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAAT
* * * * * * *
21972757 TTT-TCGAACATTCCATGCTCTGGAAATCGTACCATTTGGTCGATACAATTTGTCAATTTT-TAA
253 TTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAA
* * * * *
21972820 ATAAGTTCTGG-CTTTGAATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGA
316 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
21972884 TGAACTTCCGTACTTATCAAACATTTACGAGTTATTTTTTAACTTCGATTC
381 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * *
21972935 CTTAAAGTATTCAAGAAGATCCATTTCTAAGAGCAA-TTTTCTAAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* *
21972999 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
21973064 ATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
21973129 ACTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATGTTT-T
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAAT-TTTCT
* *
21973193 GAACATTCCATGCTCGGGAATTCACATCATTTGGTCTAAATAGTTTG-C----------C-A---
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * *
21973243 -------TT-AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * * *
21973297 TT-CAAACTTGTTAAACTTTTATGAGCTCTTTTATAATTTCTATTG
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * * * *
21973342 CATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAACTTCTCGAACATTCCATGCTCTGAAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
** * * * * * * ***
21973406 CATACCATTTGGTCGATACAATTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAGTTTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21973471 ATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * *
21973536 AGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAATTTTCTG
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* * * *
21973601 GACATTCCATGCTCAGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTTTATACACAAGT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-A-ACAAGT
* * *
21973666 TTTGGTC-TTGAATT-AGAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
21973729 TCCGTACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
387 TCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * *
21973774 CTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGCAA-TTTTCTGAACATTCCGTGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * *
21973838 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAATTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * ** * *
21973903 ATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTTTGAACTTATCAAACTTTTATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * *
21973968 AGTTCTTTTATAACTTCTG-TTGCTTAAAGTATTCAAGATGATCTATTCC-ATCGAGCAATTTT-
195 AGTTCTTTT-TAACTT-TGATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATTTTC
* * * *
21974030 TCGAACAGTT-CGTGCTCGGGAAATTGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAA
257 T-GAACA-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
21974094 GTTTTGGTCTTTGAATTAAGATCTT-TTTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGA
320 GTTTTGGTCTTTGAATTAAAAACTTATTT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * * * * * * *
21974158 ACTGT-TGAACTCGCCAAACTTATATGAGTTCTTTTATAGTATTTTGGTTC
384 ACT-TCCGAACTTGTCAAACTTTTACGAGTTATTTTTTA--ACTTCGATTC
* * * * * * *
21974208 CATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * * *
21974269 GCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAGTTTTGGTCTTTAAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
**
21974334 TTTACGTGAGAATTGTTTCTCTCTTTGG-TCTTGGACGAACTTCTAAACTTGTCAAACTTTTACG
131 TTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
21974398 ACTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTACCAGCAATTTTTTG
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* * * *
21974463 AACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAAACTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTT
* * * *
21974528 TTAGTCTTTGAATTAAAAACTTAGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * *
21974591 TT-CAAACTTG-CTAAACTTTTATGAGCTCTTTTATAATTTCTATTT
386 TTCCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * ** *
21974636 CATAAAGTATTCTAGACGATTTATTCC-ATCGAGCAATTTTTCGAACATTCCATGCTCTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * * * * * *
21974700 CGTACCATTTGGTCGATACAATTTGTCAATTTTTAAATAAGTTTTGGTCTTTGAATCAAAATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
21974765 ATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACATTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* ** ** * * *
21974830 AGTTATTTTTTAACTTCAATTCCTTAAAGTATTCAAGAATATCCATTTCTAAGAGCAATTTTCTA
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
21974895 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
21974960 TAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
324 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * * * *
21975025 TGAACATATCAAACTTTTACGAGTTCTTTCATT-GCTTTTTGGTTC
389 CGAACTTGTCAAACTTTTACGAGTTATTT-TTTAAC--TTCGATTC
* * * * *
21975070 CTTAACGTATTCAAGACGATCCATTCCTTCGTGCAA-TTTTCTG-A-A--CCATGCTCGGGAAAA
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * * * *
21975130 CACATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* *
21975195 ATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * * *
21975260 ACTTATTGTTTAACTTTTATTCCTTAAAATATTCAAGAAGACCCATTCCTACCAGCAATTTTTTG
195 AGTTCTT-TTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* * * * * *
21975325 AACATTCCATACTTGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAAAAAACTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTT
* * * * *
21975390 TTAGTCTTTGAATTAAAAACTTAGTTA-GTCAGAATTGTTTCTATCTTGGTTATTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * *
21975453 TT-CAAACTTG-CTAAACTTTTATGAGCTCTTTTATAATTTCTATTG
386 TTCCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * **
21975498 CATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCAAACATTCCATGCTTTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * * * * *
21975562 CGTACCATTTGGTCGATACAATTTGTCAATTTTTAAATAAGTTTTGGTCTTTGAATTAAAATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21975627 ATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTCCCGTACTTATCAAACATTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
21975692 AGTTATTTTTTAACTTTGATTCCTTAAAGTGTTCAAGAAGATCCATTACTAAGAGCAATTTTCTA
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
*
21975757 AACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
21975822 TAGTCTTTAAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTT
324 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * * * * *
21975887 TGAACATATCAAACCTTTACGAGTTCTTTCATT-GCTTTTTGGTTC
389 CGAACTTGTCAAACTTTTACGAGTTATTT-TTTAAC--TTCGATTC
* * *
21975932 CTTAACA-TATTCAAGACGATCCATTCCTTCGTGCAA-TTTTCTG-A-A--CCATGCTCGGGAAA
1 CTTAA-AGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAA
* * * * * * *
21975991 ACACATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * *
21976056 TATTTACGTGAGAATTGTTTCCCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * *
21976121 GACTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAC-ATCCATTCCGACTAGTAATTTTT
194 GAGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAG-ACGATCCATTCCTACGAGCAATTTTC
* * * * * *
21976185 TGAACATTCCATGCTCAGGAATTCGCTTCATTTGGTCTAAATAGATTGTC-TTTATGTAAAAAAC
257 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-TGTAAACAAG
* * * * * *
21976249 TTTTAGTCTTTGAATTAAAAACGTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAA
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AA
* * * * * * * * * *
21976311 CATT-CAAACTTGTTAAACTATTATGAGCTCTTTTATAATTTCTATTG
385 C-TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21976358 CATAAAGTATTCTAGACGATCTATTCC-ATCGAGCAATTTTTTGAACATTCCATG-T------A-
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * ** ***
21976414 --C--CATTTGGTCGATACAATTTGTCAATTTGGAATTAAGTTTTGGTCTTTGAATTAAAGTTTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** ** * * * * * *
21976475 ATCAATATCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTATCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
21976540 AGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAATG-TCCATTCCTAAGAGCAATTTTCT
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAG-ACGATCCATTCCTACGAGCAATTTTCT
* * * *
21976604 GTACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTATACACAAGTT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
21976669 TTGGTC-TTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTT
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
21976732 CCGTACTTGTCAAACTTTTACGAGTAATTTTTTAACTTTGATTC
388 CCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * *
21976776 CTTAAAGTGTTCAAGAAGATCCATTACTAAGAGCAA-TTTTCTAAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* *
21976840 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** * * *
21976905 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACATATCAATCTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
21976970 AGTTCTTTCATT-GCTTTTTGGTTCCTTAACA-TATTCAAGACGATCCATTCCTTCGTG-ATATT
195 AGTTCTTT--TTAAC--TTTGATTCCTTAA-AGTATTCAAGACGATCCATTCCTACGAGCA-ATT
* * * * * * *
21977032 TTCTG-A-A--CCACGCTTGGGAAAACACATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACA
254 TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
21977093 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
319 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
21977158 ACTTCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTCGATTC
384 ACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * * * *
21977206 CTTAAAGTATTTAAGAAGATCCATTCCTACTAGTAATTTTTTGAACATTCCATTCTCGAGAATTC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
21977271 GCTTCATTTGGTCTAAATAGTTTGTC-ATTATGTAAA-AGACTTTTAGTCTTTGAATTAAAAACT
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGTAAACA-AGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
21977334 TAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTGTTAAACTTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTCAAACTTTT
* * * * * * *
21977395 ATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-ATCGAGCTATT
192 ACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATT
* * * * * *
21977458 TT-TCGAACATTCCATACTCTGGAAATCGTACCATTTGGTC-AATACAGTTTGTCAATTTGTAAA
254 TTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTGTCATTTTGTAAA
* *** * * *
21977521 TAAGTTTTGGTCTTTGAATTAAAGTTTTATTAACGTCAGAATTG-TTCATCTCTTGGTTCATGGA
317 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC-TCTCTTGGTTCTTGGA
* * *
21977585 TGAACTTCCGTACTTATCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
381 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * *
21977636 CTTAAAGTATTTAAGAAGATCCATTCCTAAGAGCAA-TTTTCTGTACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * *
21977700 CGCATCATTTGGTCTAAATAGTTTGTCATTTTATACACAAGTTTTGGTC-TTGAATT-AAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
21977763 ATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
21977828 AGTTAGTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGTAATTTTCTG
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* *
21977893 AACATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
21977958 TAGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TC
324 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * ** * * * *
21978022 TTGATCTTAACAAACTTTTATGAGTTCTTTTATAACTTCTG-TTG
389 -CGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTC-GATTC
* * * * * * *
21978066 CTTAAAATATTCAATACGATCTATTCC-ATCAAGCAATATTTCGAACAGTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * *
21978130 CGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAGATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * * * *
21978195 ATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTTTCGAACTCGTCAAACTTATATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * * *
21978260 AGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGATGATCCATTCCTTCGTGCAATTTTT
195 AGTTCTTTT-TA--ACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTC
* * * * *
21978325 TG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAGT
257 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * *
21978386 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * **
21978451 TCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTTTATTC
387 TCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * **
21978496 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGCAATTTTTTGAACATTCCATGCTCTTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
21978561 GCATCATTTGGTCTAAATAGTTTTTC-ATTATGTAAAAAAAACTTTTAGTCTTTGAATTAAAAAC
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGT--AAACAAGTTTTGGTCTTTGAATTAAAAAC
* * * ** *
21978625 TTAGTTA-GTCAGAATTGTTTCTATCTTGAATCTTGGA-GTAACATT-CAAACTTG-CTAAACTT
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTC-AAACTT
* * * * * * *
21978686 TTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGAATTCAAGACGATCTATTCC-ATCGAGCAA
190 TTACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAA
* ** * * *
21978749 TTTT-TCGAACATTCCATGCTCTGGAAATCATACCATTTGGTC-AATACAATTTGTCAATTTT-T
252 TTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTGTC-ATTTTGT
* * * *
21978811 AAATAAGTTTTGGTCTTTGAATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATG
314 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * * * * * *
21978876 GATGAACTTTCGAACTCGTCAAACTTATATGAGTTCTTTTATAGCATTTTGGTTC
379 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTA--ACTTCGATTC
* * * * * * *
21978931 CATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAAC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * * *
21978992 GCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAGTTTTGGTCTTTAAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * *
21979057 TTTATGTGAGAATTGTTTCTCCCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * * *
21979122 CTTATTTTTTAACTTTTATTACTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATTTTTTGA
196 GTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTGA
* * * ** * * *
21979187 ACATTCCATGCTCTGGAATTCGCATAATTTGGTCTAAATAGTTTACCATTATGTAAAAAACTTTT
260 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
21979252 AGTCTTTGAATTAAAAACTTAATTA-GTGGGAAAT-TTCCTATCTTGGTTCTTGGA-GTAACATT
325 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TT
* * * * * * * * *
21979314 -CAAACTTGTTAAACTTTTATGAGCTCTTTTATAATTTCTATTG
388 CCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21979357 CATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATTTTTCAAACATTCCATGCTCTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * * * * *
21979421 CGTACCATTTGGTCGATACAATTTGTCAATTTTTAAATAAGTTTTGGTCTTTGAATTAAAATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21979486 ATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGAACTCGTCAAACTTATATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * *
21979551 AGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTT
195 AGTTCTTTT-TA--ACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTC
* * ** * *
21979616 TG-A-A--CCATGCTCGGGAAAACGCATCCTACGGTCTAAATAGTTTGTCATTTTGCAAACGAGT
257 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
21979677 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
21979742 TCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTCGATTC
387 TCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21979787 CTTATAGTATTCAAGAAGATCCATTCCTACCAGTAATTTTTTGAACATTCCATGCTCGGGAATTC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
21979852 GCATCATTTGGACTAAATAGTTTG-CCATTATGTATAA-AACTTTTAGTCTTTGAATTAAAAACT
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGTA-AACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
21979915 TAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTGTTAAACTTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTCAAACTTTT
* * * * * * *
21979976 ATGAGCTCTTTTATAA-TTTCTATTACATAAAGTATTCAAGACGATCTATTTC-ATCGAGCAATT
192 ACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATT
** * * * * * *
21980039 TT-TCGAACATTCCATGCTCTAGAAATCGTACCATTTGGTCGATACAATTTGTCAATTTT-TAAA
254 TTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAA
* * * * *
21980102 TAAGTTTTGGTCTTTGAATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGAT
317 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
21980167 GAACTTCTGTACTTATCAAACATTTACGAGTTATTTTTTAACTTCGATTC
382 GAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * *
21980217 CTTAAAGTATTCAAGAAGATCCATTTCTAAGAGCAA-TTTTCTAA-A---C-TGCTAGGGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
21980276 GCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* ** * * *
21980341 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACATATCAATCTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * *
21980406 GTTCTTTCATT-GCTTTTTGGTTTCTTAACGTGTTCAAGACGATCCATTCCTTCGTA-CAATTTT
196 GTTCTTT--TTAAC--TTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACG-AGCAATTTT
* * * * *
21980469 CTG-A-A--CCATGCTCGGGAAAACACATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACAAG
256 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
21980530 TTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
21980595 TTCCAAACTTGTCAAACTTTTACGACTTATTTTTTAATTTCGATTC
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * * *
21980641 CTGAAAGTATTCAAGAAGATCCATTCCTACCAGTAATGTTTT-GAACATTCCATGCTCTGGAATT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAAT-TTTTCGAACATTCCATGCTCGGGAAAT
* * * * * *
21980705 CGCATAATTTGGTCTAAATAGTTT-ACCATTATGTAAAAAACTTTTAGTCTTTGAATTAAAAACT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATT-TGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
21980769 TAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTGTTAAACTTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTCAAACTTTT
* * * * * * *
21980830 ATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTTC-ATCGAGCAATT
192 ACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATT
* * * * * * * * * *
21980893 TT-TCAAACATTCCATACTCTGGAAATCGTACCATTTGGTCTATACAATTTGTCAATTTGTAAAT
254 TTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*** * * * * *
21980957 AAGTTTTGGTCTTTGAATTAAAGTTTTATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATG
318 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * *
21981022 AACTTCCGTATTTATCAAACTTTTACGAGTTATTTTTTAATTTCGATTC
383 AACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* *
21981071 CTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAA-TTTTCTGTACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * *
21981135 CGCATCATTTGGTCTAAATAGTCTGTC-TTTTATACACAAGTTTTGGTC-TTGAATT-AAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
21981197 ATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
21981262 AGTTATTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAAGAGCAATTTTCTG
195 AGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTG
* *
21981327 AACATTCCGTGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
21981392 TAGTCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTT
324 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
21981457 TGAACTTATCAAACTTTTATGAGTTCTTTTATAACTTCTG-TTG
389 CGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTC-GATTC
* * * *
21981500 CTTAAAGTATTCAAGACGATCTATTCC-ATCGAGTAATTTTTCGAACAGTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * ** ** *
21981564 CACATCATTTGGTCTGACCAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTATGATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * ** * * *
21981629 ATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTTTTGAACTCGTCAAACTTATATG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * *
21981694 AGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGACGATCCATTCCTTCGTGCAATTTTT
195 AGTTCTTTT-TA--ACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTC
* * * * *
21981759 TG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGAGT
257 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * *
21981820 TTTGGTCTTTAAATTTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTTGACGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * **
21981885 TCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTTTATTC
387 TCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * *
21981930 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGCAATTTTTTGAACATTCCATGCTCGTGAAATC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
21981995 GCATCATTTGGTCTAAATAGTTTGTC-ATTATGTAAAAAAACTTTTAGTCTTTGAATTAAAAAC-
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGT-AAACAAGTTTTGGTCTTTGAATTAAAAACT
* * *
21982058 ---TTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTG-CTAAACTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTC-AAACTTT
* * * * * * *
21982116 TATGAGCTCTTTTATAA-TTTCTATTGCATAAAGAATTCAAGACGATCTATTCC-ATCGAGCAAT
191 TACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAAT
* * * * * * *
21982179 TTT-TCGAACATTCCATGCTCTGGAAATCGTACCATTTGGTCGATACAATTTGTCAATTTT-TAA
253 TTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAA
* * * *
21982242 ATAAGTTTTGGTCTTTGAATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGA
316 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * * *
21982307 TGAACTTTCGTACTTATCAAACATTTACGAGTTATTTTTTAACTTCGATTC
381 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * *
21982358 CTTAAAGTATTCAAGAAGATCCATTTCTAAGAGCAA-TTTTCTAAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
*
21982422 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** * * *
21982487 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACATATCAATCTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* ** * *
21982552 AGTTCTTTCATT-GCTTTTTGGCTCCTTAACA-TATTCAAGACGATCCATTCCTTCGTGCAATTT
195 AGTTCTTT--TTAAC--TTTGATTCCTTAA-AGTATTCAAGACGATCCATTCCTACGAGCAATTT
* * * * * * *
21982615 TCTG-A-A--CCATGCTTGGGAAAACACATCCTATGGTCTAAATAGTTTGTCATTTTGCAAACGA
255 TCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
21982676 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTTGGATGAA
320 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* *
21982741 CTTCCAAACTTGTCAAACTTTTACGACTTATTTTTTAACTTCGATTC
385 CTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * *
21982788 CTTAAAGTATTCAAGAAGATCCATTCCTACCAGTAATTTTTTGAACATTCCATGCTCGGGAATTC
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
21982853 GCATCATTTGGTCTAAATAGTTTG-CCATTATGTATAA-AACTTTTAGTCTTTGAATTAAAAACT
66 GCATCATTTGGTCTAAATAGTTTGTCAATT-TGTA-AACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
21982916 TAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTTGTTAAACTTTT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTTGTCAAACTTTT
* * * * * *
21982977 ATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-ATCGAGCAATT
192 ACGAGTTCTTTT-TAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCCTA-CGAGCAATT
* * * * * * * * * * * *
21983040 TT-TCGAACATTGCATACTCTGGAAATCGTACCATTTTGTCGATACAATTTGTCAATTTGTAAAT
254 TTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
** * * * *
21983104 AAGTTTTGGTCTTTGAATTAAAATTTTATTAACGTGAGAATTGTTCCTCTCTTGGTTCATGGATG
318 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
21983169 AACTTCCGTACTTATCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
383 AACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* ** *
21983218 CTTAAAGTATTCAAGAAGATCCATTTCTAAAAGCAA-TTTTCTGTACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * * * * *
21983282 CGTATTATTTGGTCTAAATAGTTTATCATTTTGTACACAAGTTTTGGTC-TTGAATT-GAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * *
21983345 ATTTACGTGAGAATTGTTTCTCGCTTTGTTGTTGGATGAACTTCCGAACTTGTCAAA-TTGTTAT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT-TTAC
* * * * *
21983409 GAGTTATTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTACGAGCAATTTTTT
194 GAGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCT
* * * * * * *
21983474 GAACATCCCATGCTCAGGAAATCGCATCCTATGGTCTAAATAGTTTGTCATTATGTAAAGAAATT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
21983539 TAGG-CTTTGAATTAAAAAC----TTA-GTGAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACA
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-
* * * * * * * * *
21983597 TT-CAAACTTGTTAAACTTTTATGAGATCTTTTATAATTTCTATTG
386 TTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * *
21983642 CATAAAGTATTCTAGACGATCTATTCC-ATCGAGCAATTTTTCGAACATTCCATG-T------A-
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * *
21983698 --C--CATTTGGTCGATACAATTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTT
65 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
21983759 ATTAACGTGAGAAAAT-TTTCTCTCTTGGCTCATGGATGAACTTCCGTACTTATCAAACTTTTAC
130 ATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
21983823 GAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAAGAGCAATTTTCT
194 GAGTT-CTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCT
*
21983888 GTACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * *
21983953 TTAGTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCGCGCTTGGTTCTTGGACGAATTT
323 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
21984018 TTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCTG-CTG
388 CCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTC-GATTC
* * * * *
21984062 CTTAAAAGTATTCAAGATGATCTATTTCGT-CGAGCAATTTTTTGGAC-TGTCCATGCTCGGGAA
1 CTT-AAAGTATTCAAGAAGATCCA-TTCCTACGAGCAATTTTTCGAACAT-TCCATGCTCGGGAA
* * * * *
21984125 ATCACATCATTTGCTCTAAACT-GTTCGTCAATTTGTAAACAAG-TTTGGTCTTTGCATTAAAAT
63 ATCGCATCATTTGGTCTAAA-TAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
21984188 CTTATTAACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGCACTTGTTAGACTATT
127 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * * *
21984253 ACAAGTTCATTTATAAC-TTCATTTCCTTAAAGTATTCAAGACGATCTATTCCT-CGAGAAATTT
192 ACGAGTTC-TTTTTAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTT
* * * **
21984316 TTTGAAGATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATAATGTAAACAA
255 TCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* ** * * *
21984381 CTTTTAATCTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTAGA-GTA
320 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-A
* * * * * * *
21984445 ACTTCCAAACTTGTCAAACTTTTACGAGCTCTTTTATAATTTCTATTG
384 ACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * ** * * **
21984493 CATAAAGTATTCAAGACGATTTATTCC-ATCGAGCAATTTTTTGAATATTCCATGCTTTGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTA-CGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * * * * *
21984557 CGTACCATTTGGTC-AATACAATTTATCAATTTGTAAACAAGTTTTGGCCTTTGAATTAAAATCT
65 CGCATCATTTGGTCTAA-ATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * ** * *
21984621 TATTAACGTGGGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGTCCTAGT-AAACTTTTAT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * * * *
21984685 GAGTTCTTCTATAACTTTGGTTCCTTGACGTGTATTCAAGGCGATCCATTCCTTCGTGCTATTTT
194 GAGTTCTT-TTTAACTTTGATTCCTT-A-AAGTATTCAAGACGATCCATTCCTACGAGCAATTTT
* ** * *
21984750 -TCAA-A--CCATGCTTTGGAAATCGCATCCTTTGGTCTTAAATAGTTTGTCAATTTGTAAACAA
256 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAACAA
* * *
21984811 GTTTTGGTCTTTAAATTAAAAAACTTATTTCCGTGAGAATTG--TCTCTCTTGGTT-TGTGGATG
320 GTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACG
* * * * * * * * *
21984873 AACTTCAGCACTTGTAAAACTATTATGAGTTATTTTATACCCTCGCTTC
383 AACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
* * * ** *
21984922 CTTAAAGTATTCAAGACGATCCAATCTTTTGAGAAATTTTAT-GAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTT-TCGAACATTCCATGCTCGGGAAAT
* * *
21984986 CGCATCATTTAGTCTAAATAGTTTGAT-ATTTTGTAAACAAGTCTTGGTCTTTGAATTAAAAACT
65 CGCATCATTTGGTCTAAATAGTTTG-TCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * *
21985050 TATGTACGTGAGAACTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGACAAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* ** * * *
21985115 AAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGATGATACATTCCTTCGAGCAATTTT-T
194 GAGTTCTTTT-TAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCT
* * * * **
21985179 CGAACATTCCTTGCTCGGGAAATCACGTCATTTAGTCTAAATAGTTCATCATTTTGT-AACAGAG
258 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AG
* * * * *
21985243 TTATGGTCTTTTAATTAAAAACTTATTTACATGAGAATTGTTTATCTCTTGGTTCATGGACGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * *
21985308 TTTTGCACTTG-CTAAACTTTTACGAGTTCA-TTTATAACTTC-ACTTC
386 TTCCGAACTTGTC-AAACTTTTACGAGTT-ATTTTTTAACTTCGA-TTC
* *
21985354 CTTAAAGTATTCAAGAAGATCTATTCCT-CGAG-AAATTTTCTGAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
*
21985417 CGAATCATTT
65 CGCATCATTT
21985427 TGGACTCAAC
Statistics
Matches: 12982, Mismatches: 2397, Indels: 1089
0.79 0.15 0.07
Matches are distributed among these distances:
406 5 0.00
407 303 0.02
408 15 0.00
409 14 0.00
410 2 0.00
412 36 0.00
413 7 0.00
414 173 0.01
415 20 0.00
416 10 0.00
417 22 0.00
418 297 0.02
419 11 0.00
420 67 0.01
421 41 0.00
422 4 0.00
423 19 0.00
424 411 0.03
425 92 0.01
426 609 0.05
427 230 0.02
428 1102 0.08
429 1266 0.10
430 4985 0.38
431 1158 0.09
432 1525 0.12
433 233 0.02
434 267 0.02
435 58 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (431 bp):
CTTAAAGTATTCAAGAAGATCCATTCCTACGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTTAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTACGAGCAATTTTCTGAA
CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
AACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGATTC
Found at i:21973417 original size:191 final size:193
Alignment explanation
Indices: 21973052--21973419 Score: 426
Period size: 191 Copynumber: 1.9 Consensus size: 193
21973042 TTAGTCTTTG
* * * *
21973052 AATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTAATTACGTGAGAATTATTCCTATCTTGGTTCTTGGACGAACTTCCAAACTTGT
* *
21973117 CAAACTTTTACGACTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGACTTATTTTATAACTTCGATTCCATAAAGTATTCAAGAAGATCCATTCCTACC
* * * * * *
21973182 AGTAATGTTTTGAACATTCCATGCTCGGGAATTCACATCATTTGGTCTAAATAGTTTGCCATT
131 AGCAATGTCTCGAACATTCCATGCTCGGAAAATCACACCATTTGGTCTAAATAGTTTGCCATT
*
21973245 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTAATTACGTGAGAATTATTCCTATCTTGGTTCTTGGACG-AAC-TTCCAAACTT
* * * * * * * *
21973306 GTTAAACTTTTATGAGC-TCTTTTATAATTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-
64 GTCAAACTTTTACGA-CTTATTTTATAACTTCGATTCCATAAAGTATTCAAGAAGATCCATTCCT
* * *
21973369 ATCGAGCAACT-TCTCGAACATTCCATGCTCTGAAAATCATACCATTTGGTC
128 A-CCAGCAA-TGTCTCGAACATTCCATGCTCGGAAAATCACACCATTTGGTC
21973420 GATACAATTT
Statistics
Matches: 146, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
190 2 0.01
191 116 0.79
192 12 0.08
193 16 0.11
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.39
Consensus pattern (193 bp):
AATTAAAAACTTAATTACGTGAGAATTATTCCTATCTTGGTTCTTGGACGAACTTCCAAACTTGT
CAAACTTTTACGACTTATTTTATAACTTCGATTCCATAAAGTATTCAAGAAGATCCATTCCTACC
AGCAATGTCTCGAACATTCCATGCTCGGAAAATCACACCATTTGGTCTAAATAGTTTGCCATT
Found at i:21973702 original size:216 final size:216
Alignment explanation
Indices: 21973245--21985426 Score: 11573
Period size: 216 Copynumber: 56.8 Consensus size: 216
21973235 GTTTGCCATT
* * * * *
21973245 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21973306 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * ** * * * * *
21973369 ATCGAGCAA-CTTCTCGAACATTCCATGCTCTGAAAATCATACCATTTGGTCGATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
21973433 AATTTGTAAATAAGTTTTGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
*** * * * * * * *
21973459 AATTAAAGTTTTATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
*
21973524 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * *
21973589 AGCAATTTTCTGGACATTCCATGCTCAGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21973654 TTATACACAAGTTTTGGTC-TTG
196 GTA-A-ACAAGTTTTGGTCTTTG
* * * *
21973676 AATT-AGAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21973740 CAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
*
21973805 AGCAATTTTCTGAACATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21973870 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * * * ** *
21973891 AATTAAAAATTTATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTTTGAACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21973956 CAAACTTTTATGAGTTCTTTTATAACTTCTG-TTGCTTAAAGTATTCAAGATGATCTATTCC-AT
66 CAAACTTTTACGAGTTATTTTTTAACTT-TGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA-
* * *
21974019 CGAGCAATTTT-TCGAACAGTT-CGTGCTCGGGAAATTGCATCATTTGGTCTAAACAGTTTGTCA
129 CGAGCAATTTTCT-GAACA-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
21974082 ATTTGTAAACAAGTTTTGGTCTTTG
192 TTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * * *
21974107 AATTAAGATCTT-TTTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTGT-TGAACTC
1 AATTAAAAACTTATTT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTT
* * * * * * * * * *
21974170 GCCAAACTTATATGAGTTCTTTTATAGTATTTTGGTTCCATAACGTATTCAAGACGATCCATTCC
64 GTCAAACTTTTACGAGTTATTTTTTA--ACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCC
* * * * * *
21974235 TTCGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCA
127 TACGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * *
21974296 TTTTGCAAACGAGTTTTGGTCTTTA
192 TTTTGTAAACAAGTTTTGGTCTTTG
**
21974321 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGG-TCTTGGACGAACTTCTAAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTG
* *
21974385 TCAAACTTTTACGACTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
65 TCAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
* * * *
21974450 CAGCAATTTTTTGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTA
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
21974515 TGTAAAAAAACTTTTAGTCTTTG
195 TGT-AAACAAGTTTTGGTCTTTG
* * * *
21974538 AATTAAAAACTTAGTTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * **
21974600 G-CTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTTCATAAAGTATTCTAGACGATTTATTCC
64 GTC-AAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCC
* * * * * * *
21974663 -ATCGAGCAATTTT-TCGAACATTCCATGCTCTGGAAATCGTACCATTTGGTCGATACAATTTGT
127 TA-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
21974726 CAATTTT-TAAATAAGTTTTGGTCTTTG
190 C-ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * *
21974753 AATCAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTCCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* ** * * *
21974818 CAAACATTTACGAGTTATTTTTTAACTTCAATTCCTTAAAGTATTCAAGAATATCCATTTCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
*
21974883 AGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21974948 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
** * *
21974969 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACATAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21975034 CAAACTTTTACGAGTTCTTTCATT-GCTTTTTGGTTCCTTAACGTATTCAAGACGATCCATTCCT
66 CAAACTTTTACGAGTTATTT-TTTAAC--TTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * * *
21975098 TCGTGCAATTTTCTG-A-A--CCATGCTCGGGAAAACACATCCTATGGTCTAAATAGTTTGTCAT
128 ACGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* *
21975159 TTTGCAAACAAGTTTTGGTCTTTA
193 TTTGTAAACAAGTTTTGGTCTTTG
* *
21975183 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21975248 CAAACTTTTACGACTTATTGTTTAACTTTTATTCCTTAAAATATTCAAGAAGACCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * *
21975313 AGCAATTTTTTGAACATTCCATACTTGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
21975378 GTAAAAAAACTTTTAGTCTTTG
196 GT-AAACAAGTTTTGGTCTTTG
* * * * *
21975400 AATTAAAAACTTAGTTA-GTCAGAATTGTTTCTATCTTGGTTATTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * *
21975462 G-CTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC
64 GTC-AAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCC
* ** * * * * * *
21975525 -ATCGAGCAATTTT-TCAAACATTCCATGCTTTGGAAATCGTACCATTTGGTCGATACAATTTGT
127 TA-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
21975588 CAATTTT-TAAATAAGTTTTGGTCTTTG
190 C-ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * *
21975615 AATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTCCCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21975680 CAAACATTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTGTTCAAGAAGATCCATTACTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* *
21975745 AGCAATTTTCTAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
21975810 GTAAACAAGTTTTAGTCTTTA
196 GTAAACAAGTTTTGGTCTTTG
* * ** * *
21975831 AATTAAAAAATTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTTTGAACATAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21975896 CAAACCTTTACGAGTTCTTTCATT-GCTTTTTGGTTCCTTAACA-TATTCAAGACGATCCATTCC
66 CAAACTTTTACGAGTTATTT-TTTAAC--TTTGATTCCTTAA-AGTATTCAAGAAGATCCATTCC
* * * * * *
21975959 TTCGTGCAATTTTCTG-A-A--CCATGCTCGGGAAAACACATCCTATGGTCTAAATAGTTTGTCA
127 TACGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
21976020 TTTTGCAAACAAGTTTTGGTCTTTA
192 TTTTGTAAACAAGTTTTGGTCTTTG
* * *
21976045 AATTAAAAACTTATTTACGTGAGAATTGTTTCCCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * *
21976110 CAAACTTTTACGACTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAACATCCATTCCGACT
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * * *
21976175 AGTAATTTTTTGAACATTCCATGCTCAGGAATTCGCTTCATTTGGTCTAAATAGATTGTC-TTTA
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-
* * *
21976239 TGTAAAAAACTTTTAGTCTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* * * * * *
21976261 AATTAAAAACGTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * * * *
21976322 GTTAAACTATTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCTAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * *
21976385 ATCGAGCAATTTTTTGAACATTCCATG-T------A---C--CATTTGGTCGATACAATTTGTCA
128 A-CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * **
21976438 ATTTGGAATTAAGTTTTGGTCTTTG
192 TTTTGTAAACAAGTTTTGGTCTTTG
*** ** ** * * * * * *
21976463 AATTAAAGTTTTATCAATATCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* *
21976528 CAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAATG-TCCATTCCTAA
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAA-GATCCATTCCTAC
* *
21976592 GAGCAATTTTCTGTACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTT
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
21976657 TATACACAAGTTTTGGTC-TTG
195 TGTAAACAAGTTTTGGTCTTTG
* * *
21976678 AATT-AAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21976742 CAAACTTTTACGAGTAATTTTTTAACTTTGATTCCTTAAAGTGTTCAAGAAGATCCATTACTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
*
21976807 AGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21976872 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
** * *
21976893 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACATAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21976958 CAATCTTTTACGAGTTCTTTCATT-GCTTTTTGGTTCCTTAACA-TATTCAAGACGATCCATTCC
66 CAAACTTTTACGAGTTATTT-TTTAAC--TTTGATTCCTTAA-AGTATTCAAGAAGATCCATTCC
* * * * * * * *
21977021 TTCGTG-ATATTTTCTG-A-A--CCACGCTTGGGAAAACACATCCTATGGTCTAAATAGTTTGTC
127 TACGAGCA-ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
21977081 ATTTTGCAAACAAGTTTTGGTCTTTA
191 ATTTTGTAAACAAGTTTTGGTCTTTG
* *
21977107 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21977172 CAAACTTTTACGACTTATTTTTTAACTTCGATTCCTTAAAGTATTTAAGAAGATCCATTCCTACT
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * * * *
21977237 AGTAATTTTTTGAACATTCCATTCTCGAGAATTCGCTTCATTTGGTCTAAATAGTTTGTCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
21977302 GTAAA-AGACTTTTAGTCTTTG
196 GTAAACA-AGTTTTGGTCTTTG
* * * * *
21977323 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21977384 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * * *
21977447 ATCGAGCTATTTT-TCGAACATTCCATACTCTGGAAATCGTACCATTTGGTC-AATACAGTTTGT
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTGT
* *
21977510 CAATTTGTAAATAAGTTTTGGTCTTTG
190 CATTTTGTAAACAAGTTTTGGTCTTTG
*** * * * * * *
21977537 AATTAAAGTTTTATTAACGTCAGAATTG-TTCATCTCTTGGTTCATGGATGAACTTCCGTACTTA
1 AATTAAAAACTTATTTACGTGAGAATTGTTTC-TCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* * *
21977601 TCAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTTAAGAAGATCCATTCCTAA
65 TCAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
*
21977666 GAGCAATTTTCTGTACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
21977731 TATACACAAGTTTTGGTC-TTG
195 TGTAAACAAGTTTTGGTCTTTG
* * *
21977752 AATT-AAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21977816 CAAACTTTTACGAGTTAGTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* *
21977881 AGTAATTTTCTGAACATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
21977946 GTAAACATGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * * *
21977967 AATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TCTTGATCTTA
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CGAACTTG
* * * * * * * * *
21978031 ACAAACTTTTATGAGTTCTTTTATAACTTCTG-TTGCTTAAAATATTCAATACGATCTATTCC-A
65 TCAAACTTTTACGAGTTATTTTTTAACTT-TGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * *
21978094 TCAAGCAATATTTC-GAACAGTCCATGCTCGGGAAATCGCATCATTTGGTCTAAACAGTTTGTCA
129 -CGAGCAAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
21978158 ATTTGTAAACAAGTTTTGGTCTTTG
192 TTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * * * *
21978183 AATTAAGATCTTATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTTTCGAACTCGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * * * *
21978248 CAAACTTATATGAGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGATGATCCATTCCTT
66 CAAACTTTTACGAGTTATTTTTTA--ACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * * *
21978313 CGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATT
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
21978374 TTGCAAACGAGTTTTGGTCTTTA
194 TTGTAAACAAGTTTTGGTCTTTG
* * *
21978397 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21978462 CAAACTTTTACGACTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* ** * *
21978527 AGCAATTTTTTGAACATTCCATGCTCTTGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
21978592 GTAAAAAAAACTTTTAGTCTTTG
196 GT--AAACAAGTTTTGGTCTTTG
* * * ** *
21978615 AATTAAAAACTTAGTTA-GTCAGAATTGTTTCTATCTTGAATCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21978677 G-CTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGAATTCAAGACGATCTATTCC
64 GTC-AAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCC
* ** * * *
21978740 -ATCGAGCAATTTT-TCGAACATTCCATGCTCTGGAAATCATACCATTTGGTC-AATACAATTTG
127 TA-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTG
*
21978802 TCAATTTT-TAAATAAGTTTTGGTCTTTG
189 TC-ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * *
21978830 AATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGAACTCGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * * * *
21978895 CAAACTTATATGAGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGACGATCCATTCCTT
66 CAAACTTTTACGAGTTATTTTTTA--ACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * * *
21978960 CGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATT
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
21979021 TTGCAAACGAGTTTTGGTCTTTA
194 TTGTAAACAAGTTTTGGTCTTTG
* * * *
21979044 AATTAAAAACTTATTTATGTGAGAATTGTTTCTCCCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21979109 CAAACTTTTACGACTTATTTTTTAACTTTTATTACTTAAAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * * ** *
21979174 AGTAATTTTTTGAACATTCCATGCTCTGGAATTCGCATAATTTGGTCTAAATAGTTTACCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
21979239 GTAAAAAACTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * * * *
21979260 AATTAAAAACTTAATTA-GTGGGAAAT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21979321 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * * * * *
21979384 ATCGAGCAATTTT-TCAAACATTCCATGCTCTGGAAATCGTACCATTTGGTCGATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
21979448 AATTTT-TAAATAAGTTTTGGTCTTTG
191 -ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * *
21979474 AATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGAACTCGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * * * *
21979539 CAAACTTATATGAGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGACGATCCATTCCTT
66 CAAACTTTTACGAGTTATTTTTTA--ACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * * **
21979604 CGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAACGCATCCTACGGTCTAAATAGTTTGTCATT
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
21979665 TTGCAAACGAGTTTTGGTCTTTA
194 TTGTAAACAAGTTTTGGTCTTTG
* *
21979688 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21979753 CAAACTTTTACGACTTATTTTTTAACTTCGATTCCTTATAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * * *
21979818 AGTAATTTTTTGAACATTCCATGCTCGGGAATTCGCATCATTTGGACTAAATAGTTTGCCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
21979883 GTATAA-AACTTTTAGTCTTTG
196 GTA-AACAAGTTTTGGTCTTTG
* * * * *
21979904 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * * *
21979965 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTACATAAAGTATTCAAGACGATCTATTTC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
** * * * * * *
21980028 ATCGAGCAATTTT-TCGAACATTCCATGCTCTAGAAATCGTACCATTTGGTCGATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
21980092 AATTTT-TAAATAAGTTTTGGTCTTTG
191 -ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * *
21980118 AATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTCTGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21980183 CAAACATTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTTCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* *
21980248 AGCAATTTTCT-AA-A---C-TGCTAGGGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21980307 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* ** * *
21980328 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACATAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * * *
21980393 CAATCTTTTACGAGTTCTTTCATT-GCTTTTTGGTTTCTTAACGTGTTCAAGACGATCCATTCCT
66 CAAACTTTTACGAGTTATTT-TTTAAC--TTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * *
21980457 TCGTA-CAATTTTCTG-A-A--CCATGCTCGGGAAAACACATCCTATGGTCTAAATAGTTTGTCA
128 ACG-AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
21980517 TTTTGCAAACAAGTTTTGGTCTTTA
192 TTTTGTAAACAAGTTTTGGTCTTTG
* *
21980542 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* *
21980607 CAAACTTTTACGACTTATTTTTTAA-TTTCGATTCCTGAAAGTATTCAAGAAGATCCATTCCTAC
66 CAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
* * * * * **
21980671 CAGTAATGTTT-TGAACATTCCATGCTCTGGAATTCGCATAATTTGGTCTAAATAGTTTACCATT
130 GAGCAAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * *
21980735 ATGTAAAAAACTTTTAGTCTTTG
194 TTGTAAACAAGTTTTGGTCTTTG
* * * * *
21980758 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * * *
21980819 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTTC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * * * * *
21980882 ATCGAGCAATTTT-TCAAACATTCCATACTCTGGAAATCGTACCATTTGGTCTATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
21980946 AATTTGTAAATAAGTTTTGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
*** * * * * * * * *
21980972 AATTAAAGTTTTATTAACGTCAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTATTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
*
21981037 CAAACTTTTACGAGTTATTTTTTAA-TTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAA
66 CAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
* *
21981101 GAGCAATTTTCTGTACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTCTGTC-TTT
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
21981165 TATACACAAGTTTTGGTC-TTG
195 TGTAAACAAGTTTTGGTCTTTG
* * *
21981186 AATT-AAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGACGAACTTCCGTACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21981250 CAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* *
21981315 AGCAATTTTCTGAACATTCCGTGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21981380 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * ** *
21981401 AATTAAAAATTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTTGAACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * *
21981466 CAAACTTTTATGAGTTCTTTTATAACTTCTG-TTGCTTAAAGTATTCAAGACGATCTATTCC-AT
66 CAAACTTTTACGAGTTATTTTTTAACTT-TGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA-
* * * * ** *
21981529 CGAGTAATTTT-TCGAACAGTCCATGCTCGGGAAATCACATCATTTGGTCTGACCAGTTTGTCAA
129 CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
21981593 TTTGTAAACAAGTTTTGGTCTTTG
193 TTTGTAAACAAGTTTTGGTCTTTG
** * * * * * * ** *
21981617 AATTATGATCTTATTAACCTGAGAATTGTTTCTCTCTTGGATCATGGATGAACTTTTGAACTCGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * * * *
21981682 CAAACTTATATGAGTTCTTTTATAGCATTTTGGTTCCATAACGTATTCAAGACGATCCATTCCTT
66 CAAACTTTTACGAGTTATTTTTTA--ACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * * *
21981747 CGTGCAATTTTTTG-A-A--CCATGCTCGGGAAAACGCATCCTATGGTCTAAATAGTTTGTCATT
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
21981808 TTGCAAACGAGTTTTGGTCTTTA
194 TTGTAAACAAGTTTTGGTCTTTG
* * * *
21981831 AATTTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21981896 CAAACTTTTACGACTTATTTTTTAACTTTTATTCCTTAAAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * *
21981961 AGCAATTTTTTGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
21982026 GTAAAAAAACTTTTAGTCTTTG
196 GT-AAACAAGTTTTGGTCTTTG
* * *
21982048 AATTAAAAAC----TTA-GTCAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21982106 G-CTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGAATTCAAGACGATCTATTCC
64 GTC-AAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCC
* * * * * * *
21982169 -ATCGAGCAATTTT-TCGAACATTCCATGCTCTGGAAATCGTACCATTTGGTCGATACAATTTGT
127 TA-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
21982232 CAATTTT-TAAATAAGTTTTGGTCTTTG
190 C-ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * *
21982259 AATTAAAATCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * *
21982324 CAAACATTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTTCTAAG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* *
21982389 AGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAATTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21982454 GTAAACAAGTTTTAGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
** * *
21982475 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACATAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * ** *
21982540 CAATCTTTTACGAGTTCTTTCATT-GCTTTTTGGCTCCTTAACA-TATTCAAGACGATCCATTCC
66 CAAACTTTTACGAGTTATTT-TTTAAC--TTTGATTCCTTAA-AGTATTCAAGAAGATCCATTCC
* * * * * * *
21982603 TTCGTGCAATTTTCTG-A-A--CCATGCTTGGGAAAACACATCCTATGGTCTAAATAGTTTGTCA
127 TACGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * *
21982664 TTTTGCAAACGAGTTTTGGTCTTTA
192 TTTTGTAAACAAGTTTTGGTCTTTG
* * * *
21982689 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTTGGATGAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21982754 CAAACTTTTACGACTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACC
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * *
21982819 AGTAATTTTTTGAACATTCCATGCTCGGGAATTCGCATCATTTGGTCTAAATAGTTTGCCATTAT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
21982884 GTATAA-AACTTTTAGTCTTTG
196 GTA-AACAAGTTTTGGTCTTTG
* * * * *
21982905 AATTAAAAACTTAATTA-GTGGGAATT-TTCCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * *
21982966 GTTAAACTTTTATGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * * * * * * * *
21983029 ATCGAGCAATTTT-TCGAACATTGCATACTCTGGAAATCGTACCATTTTGTCGATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
21983093 AATTTGTAAATAAGTTTTGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
** * * * * * *
21983119 AATTAAAATTTTATTAACGTGAGAATTGTTCCTCTCTTGGTTCATGGATGAACTTCCGTACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * **
21983184 CAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTTCTAAA
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * *
21983249 AGCAATTTTCTGTACATTCCATGCTCGGGAAATCGTATTATTTGGTCTAAATAGTTTATCATTTT
131 AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
21983314 GTACACAAGTTTTGGTC-TTG
196 GTAAACAAGTTTTGGTCTTTG
* * * * *
21983334 AATT-GAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTGTTGGATGAACTTCCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21983398 CAAA-TTGTTATGAGTTATTTTTTAACTTCGATTCCTTAAAGTGTTCAAGAAGATCCATTCCTAC
66 CAAACTT-TTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
* * * * * *
21983462 GAGCAATTTTTTGAACATCCCATGCTCAGGAAATCGCATCCTATGGTCTAAATAGTTTGTCATTA
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
21983527 TGTAAAGAAATTTAGG-CTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* *
21983548 AATTAAAAAC----TTA-GTGAGAATTGTTTCTATCTTGGTTCTTGGA-GTAACATT-CAAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAC-TTCCGAACTT
* * * * * * * * * * *
21983606 GTTAAACTTTTATGAGATCTTTTATAA-TTTCTATTGCATAAAGTATTCTAGACGATCTATTCC-
64 GTCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCT
* * * *
21983669 ATCGAGCAATTTT-TCGAACATTCCATG-T------A---C--CATTTGGTCGATACAATTTGTC
128 A-CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
21983721 AATTTGTAAACAAGTTTTGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * * *
21983747 AATTAAAATCTTATTAACGTGAGAAAAT-TTTCTCTCTTGGCTCATGGATGAACTTCCGTACTTA
1 AATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* *
21983811 TCAAACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAA
65 TCAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTAC
*
21983876 GAGCAATTTTCTGTACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
130 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
*
21983941 TGTAAACAAGTTTTAGTCTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* * * * ** *
21983963 AATTAAAAACTTATATACGTGAGAATTGTTTCGCGCTTGGTTCTTGGACGAATTTTTGAACTTAT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * *
21984028 CAAACTTTTACGAGTTCTTTTATAACTTCTG-CTGCTTAAAAGTATTCAAGATGATCTATTTCGT
66 CAAACTTTTACGAGTTATTTTTTAACTT-TGATTCCTT-AAAGTATTCAAGAAGATCCA-TTCCT
* * * * *
21984092 -CGAGCAATTTTTTGGAC-TGTCCATGCTCGGGAAATCACATCATTTGCTCTAAACT-GTTCGTC
128 ACGAGCAATTTTCTGAACAT-TCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTC
*
21984154 AATTTGTAAACAAG-TTTGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * *
21984179 CATTAAAATCTTATTAACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGCACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * * *
21984244 TAGACTATTACAAGTTCA-TTTATAAC-TTCATTTCCTTAAAGTATTCAAGACGATCTATTCCT-
66 CAAACTTTTACGAGTT-ATTTTTTAACTTTGA-TTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * * *
21984306 CGAGAAATTTTTTGAAGATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATA
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * ** *
21984371 ATGTAAACAACTTTTAATCTTTT
194 TTGTAAACAAGTTTTGGTCTTTG
* * *
21984394 AATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTAGA-GTAACTTCCAAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAACTTG
* * * * * * * **
21984458 TCAAACTTTTACGAGCTCTTTTATAA-TTTCTATTGCATAAAGTATTCAAGACGATTTATTCC-A
65 TCAAACTTTTACGAGTTATTTTTTAACTTT-GATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * ** * * * * *
21984521 TCGAGCAATTTTTTGAATATTCCATGCTTTGGAAATCGTACCATTTGGTC-AATACAATTTATCA
129 -CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTGTCA
* *
21984585 ATTTGTAAACAAGTTTTGGCCTTTG
192 TTTTGTAAACAAGTTTTGGTCTTTG
* * * * * * ** *
21984610 AATTAAAATCTTATTAACGTGGGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTCGTCCTAGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * ** ** *
21984675 -AAACTTTTATGAGTTCTTCTATAACTTTGGTTCCTTGACGTGTATTCAAGGCGATCCATTCCTT
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTT-A-AAGTATTCAAGAAGATCCATTCCTA
* * * ** * *
21984739 CGTGCTATTTT-TCAA-A--CCATGCTTTGGAAATCGCATCCTTTGGTCTTAAATAGTTTGTCAA
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC-TAAATAGTTTGTCAT
*
21984800 TTTGTAAACAAGTTTTGGTCTTTA
193 TTTGTAAACAAGTTTTGGTCTTTG
* * * *
21984824 AATTAAAAAACTTATTTCCGTGAGAATTG--TCTCTCTTGGTT-TGTGGATGAACTTCAGCACTT
1 AATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCCGAACTT
* * * * * * * * * * * *
21984886 GTAAAACTATTATGAGTTATTTTATACCCTCGCTTCCTTAAAGTATTCAAGACGATCCAATCTTT
64 GTCAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTA
* * * *
21984951 TGAGAAATTTTATGAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTGAT-AT
129 CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG-TCAT
*
21985015 TTTGTAAACAAGTCTTGGTCTTTG
193 TTTGTAAACAAGTTTTGGTCTTTG
* * * * *
21985039 AATTAAAAACTTATGTACGTGAGAACTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGA
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * ** * * *
21985104 CAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGATGATACATTCCTTCG
66 CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
* * * * **
21985169 AGCAATTTT-TCGAACATTCCTTGCTCGGGAAATCACGTCATTTAGTCTAAATAGTTCATCATTT
131 AGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
21985233 TGT-AACAGAGTTATGGTCTTTT
195 TGTAAACA-AGTTTTGGTCTTTG
* * * ** *
21985255 AATTAAAAACTTATTTACATGAGAATTGTTTATCTCTTGGTTCATGGACGAACTTTTGCACTTG-
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
21985319 CTAAACTTTTACGAGTTCA-TTTATAAC-TTCACTTCCTTAAAGTATTCAAGAAGATCTATTCCT
66 C-AAACTTTTACGAGTT-ATTTTTTAACTTTGA-TTCCTTAAAGTATTCAAGAAGATCCATTCCT
* *
21985382 -CGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGAATCATTT
128 ACGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
21985427 TGGACTCAAC
Statistics
Matches: 9769, Mismatches: 1821, Indels: 755
0.79 0.15 0.06
Matches are distributed among these distances:
198 31 0.00
199 14 0.00
200 1 0.00
202 44 0.00
203 15 0.00
204 191 0.02
205 15 0.00
209 11 0.00
210 226 0.02
211 51 0.01
212 611 0.06
213 311 0.03
214 2908 0.30
215 623 0.06
216 3862 0.40
217 442 0.05
218 400 0.04
219 13 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
CAAACTTTTACGAGTTATTTTTTAACTTTGATTCCTTAAAGTATTCAAGAAGATCCATTCCTACG
AGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
GTAAACAAGTTTTGGTCTTTG
Found at i:21989721 original size:50 final size:50
Alignment explanation
Indices: 21989636--21990716 Score: 487
Period size: 50 Copynumber: 21.6 Consensus size: 50
21989626 GGTGTTACAC
* * * *
21989636 TATATCCCTGAAGTTGCAGTGGATTC--GATTAAAGCTATGAAAGCAAATCT
1 TATATCCCTGAAGTTGAAGTGGA-GCAAGA-TGAAGCTACGAAAGCAAATCT
* * * * *
21989686 TATCTCCCTAAAGTTGAAGTGGAGCAAGATGAAGCTACGATATCAAATCA
1 TATATCCCTGAAGTTGAAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
* * * * *
21989736 TATATCCCTGAAGTTGTAGTGGATC-GGATTGAAGCTATGAAAGTAAATCT
1 TATATCCCTGAAGTTGAAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* *
21989786 T-TATCTCTCTGAAGTT-ACAGTGGAGCAAAATGAAGCTAC-AACACCAAAT-T
1 TATATC-C-CTGAAGTTGA-AGTGGAGCAAGATGAAGCTACGAA-AGCAAATCT
* * * * *
21989836 CTATATCCTTGAAGTTGCAGTGGATC-AGATTGAAGCTACAAAAGAAAATCT
1 -TATATCCCTGAAGTTGAAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* * * * * * * *
21989887 TATCTCCCTAAAGATGCAGTGGAGAAAGATGAAGTTAC-AACATCAAATCC
1 TATATCCCTGAAGTTGAAGTGGAGCAAGATGAAGCTACGAA-AGCAAATCT
* * * * *
21989937 TATATCCCTGAAGTT-ACAG-GGATCGAG-TTATAGCTACCAAAGCAAATTT
1 TATATCCCTGAAGTTGA-AGTGGAGCAAGATGA-AGCTACGAAAGCAAATCT
* * * * * * *
21989986 TATCTTCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACGACATCAAATCC
1 TATATCCCTGAAGTTGAAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
* *** *
21990036 TATATCCCTAAAGTTGCAA-TGGA-TTGGATTGAAGCTACGAAAGTAAATCT
1 TATATCCCTGAAGTTG-AAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* * * * *
21990086 T-TATCTCTCTAAAG-TGTCATTGGAGCAAGATGAAGCTAC-AACA-CTAAAACA
1 TATATC-C-CTGAAGTTG-AAGTGGAGCAAGATGAAGCTACGAA-AGC-AAATCT
* * * *
21990137 TATATCCCTAAAGTT-ACAGTGGATC-GGATTGAAGCTA-GATAAGAAAATCT
1 TATATCCCTGAAGTTGA-AGTGGAGCAAGA-TGAAGCTACGA-AAGCAAATCT
* * * * *
21990187 TATCTCCCTGAAGATGCAA-TGGAGCAAGATGAAGTTAC-AATATCAAATCC
1 TATATCCCTGAAGTTG-AAGTGGAGCAAGATGAAGCTACGAA-AGCAAATCT
* * * * *
21990237 TATATCCTTGAATTTGCAA--GGATTG-AA-TTAAAGCTA-TAAAGCAAATCT
1 TATATCCCTGAAGTTG-AAGTGGA--GCAAGATGAAGCTACGAAAGCAAATCT
* * * * * * * *
21990285 TATCTTCCTAAAGTTGTAGTGGAGCAAGATGAAGCTATGACATCAAATCC
1 TATATCCCTGAAGTTGAAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
* * * * *
21990335 TATATCCTTGAAGTTGTAGTGGATC-GGATTGAAGCTACGAAAGTAAATCT
1 TATATCCCTGAAGTTGAAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* *
21990385 T-TATCTCTCTGAAGTTGCAA-TGGAGCAAGATGAAGCTAC-AACATCAAATCC
1 TATATC-C-CTGAAGTTG-AAGTGGAGCAAGATGAAGCTACGAA-AGCAAATCT
* ** * *
21990436 TATATCCCTGAAGTTGTAGTGGTTC-GGATTGAAGCTACGAAAGTAAATCT
1 TATATCCCTGAAGTTGAAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* * * *
21990486 T-TATCTCTCTGAAGTTGCAA-TGGAGCAAGATGAAGCAACAAAACCAAATCC
1 TATATC-C-CTGAAGTTG-AAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
* * * *
21990537 TATATCCCTGAAGTTGTAA-TGGATC-GGATTGAAGCTACAAAAGAAAATCT
1 TATATCCCTGAAGTTG-AAGTGGAGCAAGA-TGAAGCTACGAAAGCAAATCT
* * ** * * * * * *
21990587 TATCTCTCTGAAGATTTCA-TGGAGCAATATGAAGTTATGACATCAAATCC
1 TATATCCCTGAAG-TTGAAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
* * * * * * * *
21990637 TATATCCTTGAAGTTGCAGTGGATCAA-ATTGAAACTAC-ATTAGCCAGTCC
1 TATATCCCTGAAGTTGAAGTGGAGCAAGA-TGAAGCTACGA-AAGCAAATCT
* * *
21990687 TATATCCTTGAAGATGCAGTGGAGCAAGAT
1 TATATCCCTGAAGTTGAAGTGGAGCAAGAT
21990717 AAAGTTACAA
Statistics
Matches: 769, Mismatches: 190, Indels: 144
0.70 0.17 0.13
Matches are distributed among these distances:
47 2 0.00
48 22 0.03
49 94 0.12
50 485 0.63
51 140 0.18
52 26 0.03
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (50 bp):
TATATCCCTGAAGTTGAAGTGGAGCAAGATGAAGCTACGAAAGCAAATCT
Found at i:21989841 original size:101 final size:100
Alignment explanation
Indices: 21989635--21990757 Score: 1169
Period size: 101 Copynumber: 11.2 Consensus size: 100
21989625 GGGTGTTACA
* * * * *
21989635 CTATATCCCTGAAGTTGCAGTGGATTC-GATTAAAGCTATGAAAGCAAATCTTATCTCCCTAAAG
1 CTATATCCCTGAAGTTGCAGTGGA-TCGGATTGAAGCTACGAAAGTAAATCTTATCTCTCTGAAG
* * *
21989699 TTGAAGTGGAGCAAGATGAAGCTACGATATCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * *
21989735 ATATATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTATGAAAGTAAATCTTTATCTCTCTGAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATC-TTATCTCTCTGAAG
* * * *
21989800 TTACAGTGGAGCAAAATGAAGCTACAACACCAAATT
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * * * * *
21989836 CTATATCCTTGAAGTTGCAGTGGATCAGATTGAAGCTACAAAAGAAAATCTTATCTCCCTAAAGA
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATCTTATCTCTCTGAAGT
* *
21989901 TGCAGTGGAGAAAGATGAAGTTACAACATCAAATC
66 TGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * *
21989936 CTATATCCCTGAAGTTACAG-GGATC-GAGTT-ATAGCTACCAAAGCAAATTTTATCT-TCCTGA
1 CTATATCCCTGAAGTTGCAGTGGATCGGA-TTGA-AGCTACGAAAGTAAATCTTATCTCT-CTGA
* *
21989997 AGTTGCAGTGGAGTAAGATGAAGCTACGACATCAAATC
63 AGTTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * *
21990035 CTATATCCCTAAAGTTGCAATGGATTGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATC-TTATCTCTCTGAAG
* *
21990100 -TGTCATTGGAGCAAGATGAAGCTACAACA-CTAAAAC
65 TTG-CAGTGGAGCAAGATGAAGCTACAACATC-AAATC
* * * * *
21990136 ATATATCCCTAAAGTTACAGTGGATCGGATTGAAGCTA-GATAAGAAAATCTTATCTCCCTGAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGA-AAGTAAATCTTATCTCTCTGAAG
* * * *
21990200 ATGCAATGGAGCAAGATGAAGTTACAATATCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * * * * * * *
21990236 CTATATCCTTGAATTTGCA-AGGATTGAATTAAAGCTA-TAAAGCAAATCTTATCT-TCCTAAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATCTTATCTCT-CTGAAG
* **
21990298 TTGTAGTGGAGCAAGATGAAGCTATGACATCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* *
21990334 CTATATCCTTGAAGTTGTAGTGGATCGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTGAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATC-TTATCTCTCTGAAG
*
21990399 TTGCAATGGAGCAAGATGAAGCTACAACATCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* *
21990435 CTATATCCCTGAAGTTGTAGTGGTTCGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTGAAG
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATC-TTATCTCTCTGAAG
* * * *
21990500 TTGCAATGGAGCAAGATGAAGCAACAAAACCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * *
21990536 CTATATCCCTGAAGTTGTAATGGATCGGATTGAAGCTACAAAAGAAAATCTTATCTCTCTGAAGA
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATCTTATCTCTCTGAAG-
* * * **
21990601 TTTCA-TGGAGCAATATGAAGTTATGACATCAAATC
65 TTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* ** * * ** *
21990636 CTATATCCTTGAAGTTGCAGTGGATCAAATTGAAACTAC-ATTAGCCAGTCCTATATC-CT-TGA
1 CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGA-AAGTAAAT-CT-TATCTCTCTGA
* * * **
21990698 AGATGCAGTGGAGCAAGATAAAGTTACAATGTCAAATC
63 AGTTGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
* * * *
21990736 CTGTCTTCTTGAAGTTGCAGTG
1 CTATATCCCTGAAGTTGCAGTG
21990758 AAGTGGATAA
Statistics
Matches: 864, Mismatches: 134, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
98 68 0.08
99 116 0.13
100 311 0.36
101 363 0.42
102 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (100 bp):
CTATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACGAAAGTAAATCTTATCTCTCTGAAGT
TGCAGTGGAGCAAGATGAAGCTACAACATCAAATC
Found at i:21990403 original size:400 final size:399
Alignment explanation
Indices: 21989635--21990675 Score: 1316
Period size: 400 Copynumber: 2.6 Consensus size: 399
21989625 GGGTGTTACA
* * * * *
21989635 CTATATCCCTGAAGTTGCAGTGGATTCGATTAAAGCTATGAAAGCAAATC-TTATCTCCCTAAAG
1 CTATATCCCTGAAGTTGCAGTGGATTGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAAG
* *
21989699 TTG-AAGTGGAGCAAGATGAAGCTACGATA-TCAAATCATATATCCCTGAAGTTGTAGTGGATCG
66 TTGCAA-TGGAGCAAGATGAAGCTACAAAACT-AAATCATATATCCCTGAAGTTGTAGTGGATCG
* * * *
21989762 GATTGAAGCTATGAAAGTAAATCTTTATCTCTCTGAAGTTACAGTGGAGCAAAATGAAGCTACAA
129 GATTGAAGCTA-GAAAGAAAATC-TTATCTCTCTGAAGATACAATGGAGCAAAATGAAGTTACAA
* * * *
21989827 CACCAAATTCTATATCCTTGAAGTTGCAGTGGATCAGATTGAAGCTACAAAAGAAAATCTTATCT
192 CATCAAATCCTATATCCTTGAAGTTGCAGAGGATCAGATTAAAGCTACAAAAGAAAATCTTATCT
*
21989892 CCCTAAAGATGCAGTGGAGAAAGATGAAGTTACAACATCAAATCCTATATCCCTGAAGTTACAGG
257 CCCTAAAGATGCAGTGGAGAAAGATGAAGCTACAACATCAAATCCTATATCCCTGAAGTTACAGG
* *
21989957 GATCGAGTTATAGCTACCAAAGCAAATTTTATCTTCCTGAAGTTGCAGTGGAGTAAGATGAAGCT
322 GATCGAGTTATAGCTACCAAAGCAAATTTTATCTTCCTGAAGTTGCAATGGAGCAAGATGAAGCT
*
21990022 ACGACATCAAATC
387 ACAACATCAAATC
* *
21990035 CTATATCCCTAAAGTTGCAATGGATTGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAAG
1 CTATATCCCTGAAGTTGCAGTGGATTGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAAG
* * * * **
21990100 -TGTCATTGGAGCAAGATGAAGCTACAACACTAAAACATATATCCCTAAAGTTACAGTGGATCGG
66 TTG-CAATGGAGCAAGATGAAGCTACAAAACTAAATCATATATCCCTGAAGTTGTAGTGGATCGG
* * * *
21990164 ATTGAAGCTAGATAAGAAAATCTTATCTCCCTGAAGATGCAATGGAGCAAGATGAAGTTACAATA
130 ATTGAAGCTAGA-AAGAAAATCTTATCTCTCTGAAGATACAATGGAGCAAAATGAAGTTACAACA
* * * * *
21990229 TCAAATCCTATATCCTTGAATTTGCA-AGGAT-TGAATTAAAGCTA-TAAAGCAAATCTTATCTT
194 TCAAATCCTATATCCTTGAAGTTGCAGAGGATCAG-ATTAAAGCTACAAAAGAAAATCTTATCTC
* * * ** * **
21990291 CCTAAAGTTGTAGTGGAGCAAGATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGTAGTG
258 CCTAAAGATGCAGTGGAGAAAGATGAAGCTACAACATCAAATCCTATATCCCTGAAGTTACAG-G
* *
21990356 GATCG-GATTGA-AGCTACGAAAGTAAATCTTTATC-TCTCTGAAGTTGCAATGGAGCAAGATGA
322 GATCGAG-TT-ATAGCTACCAAAGCAAAT-TTTATCTTC-CTGAAGTTGCAATGGAGCAAGATGA
21990418 AGCTACAACATCAAATC
383 AGCTACAACATCAAATC
* *
21990435 CTATATCCCTGAAGTTGTAGTGG-TTCGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTGAA
1 CTATATCCCTGAAGTTGCAGTGGATT-GGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAA
* * * *
21990499 GTTGCAATGGAGCAAGATGAAGCAACAAAACCAAATCCTATATCCCTGAAGTTGTAATGGATCGG
65 GTTGCAATGGAGCAAGATGAAGCTACAAAACTAAATCATATATCCCTGAAGTTGTAGTGGATCGG
* * * **
21990564 ATTGAAGCTACAAAAGAAAATCTTATCTCTCTGAAGATTTC-ATGGAGCAATATGAAGTTATGAC
130 ATTGAAGCTA-GAAAGAAAATCTTATCTCTCTGAAGA-TACAATGGAGCAAAATGAAGTTACAAC
* *
21990628 ATCAAATCCTATATCCTTGAAGTTGCAGTGGATCAAATTGAAA-CTACA
193 ATCAAATCCTATATCCTTGAAGTTGCAGAGGATCAGATT-AAAGCTACA
21990676 TTAGCCAGTC
Statistics
Matches: 551, Mismatches: 71, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
398 71 0.13
399 39 0.07
400 340 0.62
401 96 0.17
402 5 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (399 bp):
CTATATCCCTGAAGTTGCAGTGGATTGGATTGAAGCTACGAAAGTAAATCTTTATCTCTCTAAAG
TTGCAATGGAGCAAGATGAAGCTACAAAACTAAATCATATATCCCTGAAGTTGTAGTGGATCGGA
TTGAAGCTAGAAAGAAAATCTTATCTCTCTGAAGATACAATGGAGCAAAATGAAGTTACAACATC
AAATCCTATATCCTTGAAGTTGCAGAGGATCAGATTAAAGCTACAAAAGAAAATCTTATCTCCCT
AAAGATGCAGTGGAGAAAGATGAAGCTACAACATCAAATCCTATATCCCTGAAGTTACAGGGATC
GAGTTATAGCTACCAAAGCAAATTTTATCTTCCTGAAGTTGCAATGGAGCAAGATGAAGCTACAA
CATCAAATC
Found at i:21990635 original size:151 final size:150
Alignment explanation
Indices: 21989635--21990659 Score: 504
Period size: 151 Copynumber: 6.8 Consensus size: 150
21989625 GGGTGTTACA
* * ** * *
21989635 CTATATCCCTGAAGTTGCAGTGGATTC-GATTAAAGCTATGAAAGCAAATCTTATCTCCCTAAAG
1 CTATATCCCTGAAGTTGCAATGGA-TCGGATTGAAGCTACAAAAGCAAATCTTATCTCTCTGAAG
* * * * * * * * * *
21989699 TTGAAGTGGAGCAAGATGAAGCTACGATATCAAATCATATATCCCTGAAGTTGTAGTGGATC-GG
65 TTGTAGTGGAGCAATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGAGCAAG
** **
21989763 ATTGAAGCTATGAAAGTAAAT-
130 A-TGAAGCTACAAAACCAAATC
* * * * ** * * *
21989784 CTTTATCTCTCTGAAGTTACAGTGGAGCAAAATGAAGCTACAACACCAAATTCTATATC-CT-TG
1 CTATATC-C-CTGAAGTTGCAATGGATCGGATTGAAGCTACAAAAGCAAA-TCT-TATCTCTCTG
* * ** * ** * * * * * *
21989847 AAGTTGCAGTGGATCAGAT-TGAAGCTACAAAAGAAAATCTTATCTCCCTAAAGATGCAGTGGAG
62 AAGTTGTAGTGGAGCA-ATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGAG
* * * *
21989911 AAAGATGAAGTTACAACATCAAATC
126 CAAGATGAAGCTACAAAACCAAATC
* * * *
21989936 CTATATCCCTGAAGTTAC-AGGGATC-GAGTT-ATAGCTACCAAAGCAAATTTTATCT-TCCTGA
1 CTATATCCCTGAAGTTGCAATGGATCGGA-TTGA-AGCTACAAAAGCAAATCTTATCTCT-CTGA
* * * * * * **
21989997 AGTTGCAGTGGAGTAAGATGAAGCTACGACATCAAATCCTATATCCCTAAAGTTGCAATGGA-TT
63 AGTTGTAGTGGAGCAATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGAGCA
* * **
21990061 GGATTGAAGCTACGAAAGTAAAT-
128 AGA-TGAAGCTACAAAACCAAATC
* * * * * * * * * *
21990084 CTTTATCTCTCTAAAG-TGTCATTGGAGCAAGA-TGAAGCTACAACA-CTAAAACATATATCCCT
1 CTATATC-C-CTGAAGTTG-CAATGGATC-GGATTGAAGCTACAAAAGC-AAATCTTATCTCTCT
* ** * * * ** * * * *
21990146 AAAGTTACAGTGGATCGGAT-TGAAGCTA-GATAAGAAAATCTTATCTCCCTGAAGATGCAATGG
61 GAAGTTGTAGTGGAGC-AATATGAAGCTATGA-CATCAAATCCTATATCCTTGAAGTTGCAATGG
* * *
21990209 AGCAAGATGAAGTTACAATATCAAATC
124 AGCAAGATGAAGCTACAAAACCAAATC
* * * * * * *
21990236 CTATATCCTTGAATTTGCAA-GGATTGAATTAAAGCTA-TAAAGCAAATCTTATCT-TCCTAAAG
1 CTATATCCCTGAAGTTGCAATGGATCGGATTGAAGCTACAAAAGCAAATCTTATCTCT-CTGAAG
* * * * *
21990298 TTGTAGTGGAGCAAGATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGTAGTGGATC-GG
65 TTGTAGTGGAGCAATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGAGCAAG
* **
21990362 ATTGAAGCTACGAAAGTAAAT-
130 A-TGAAGCTACAAAACCAAATC
* * * * * * * *
21990383 CTTTATCTCTCTGAAGTTGCAATGGAGCAAGA-TGAAGCTACAACATCAAATCCTATATCCCTGA
1 CTATATC-C-CTGAAGTTGCAATGGATC-GGATTGAAGCTACAAAAGCAAATCTTATCTCTCTGA
** * * * *
21990447 AGTTGTAGTGGTTCGGAT-TGAAGCTACGAAAGT-AAAT-CTTTATCTCTCTGAAGTTGCAATGG
63 AGTTGTAGTGGAGC-AATATGAAGCTATGACA-TCAAATCCTATATC-CT-TGAAGTTGCAATGG
*
21990509 AGCAAGATGAAGCAACAAAACCAAATC
124 AGCAAGATGAAGCTACAAAACCAAATC
* *
21990536 CTATATCCCTGAAGTTGTAATGGATCGGATTGAAGCTACAAAAGAAAATCTTATCTCTCTGAAGA
1 CTATATCCCTGAAGTTGCAATGGATCGGATTGAAGCTACAAAAGCAAATCTTATCTCTCTGAAG-
* *
21990601 TT-TCA-TGGAGCAATATGAAGTTATGACATCAAATCCTATATCCTTGAAGTTGCAGTGGA
65 TTGT-AGTGGAGCAATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGA
21990660 TCAAATTGAA
Statistics
Matches: 642, Mismatches: 181, Indels: 105
0.69 0.20 0.11
Matches are distributed among these distances:
147 14 0.02
148 87 0.14
149 114 0.18
150 61 0.10
151 288 0.45
152 64 0.10
153 14 0.02
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (150 bp):
CTATATCCCTGAAGTTGCAATGGATCGGATTGAAGCTACAAAAGCAAATCTTATCTCTCTGAAGT
TGTAGTGGAGCAATATGAAGCTATGACATCAAATCCTATATCCTTGAAGTTGCAATGGAGCAAGA
TGAAGCTACAAAACCAAATC
Found at i:21992124 original size:23 final size:23
Alignment explanation
Indices: 21992094--21992141 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
21992084 ATATGCATCA
21992094 TAAAGCTCCCTTTTTCTCTTTCC
1 TAAAGCTCCCTTTTTCTCTTTCC
21992117 TAAAGCTCCCTTTTTCTCTTTCC
1 TAAAGCTCCCTTTTTCTCTTTCC
21992140 TA
1 TA
21992142 GTGAGCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.15, C:0.33, G:0.04, T:0.48
Consensus pattern (23 bp):
TAAAGCTCCCTTTTTCTCTTTCC
Found at i:21993695 original size:28 final size:29
Alignment explanation
Indices: 21993635--21993701 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
21993625 AATTTAATCC
*
21993635 TTTTTTAATTTAGCCTTTTATTTTCTGTA
1 TTTTTTAATTTAGCCTTTAATTTTCTGTA
*
21993664 TTTTTCAATTTAG-CTTTAAATTTT-T-TA
1 TTTTTTAATTTAGCCTTT-AATTTTCTGTA
21993691 TTTTTTTAATT
1 -TTTTTTAATT
21993702 CAATCCTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 2 0.06
28 14 0.42
29 17 0.52
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.67
Consensus pattern (29 bp):
TTTTTTAATTTAGCCTTTAATTTTCTGTA
Found at i:21993737 original size:13 final size:13
Alignment explanation
Indices: 21993714--21993752 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
21993704 ATCCTTTACC
21993714 TTATGTTATTT-TT
1 TTAT-TTATTTATT
21993727 TTGATTTATTTATT
1 TT-ATTTATTTATT
21993741 TTATTTATTTAT
1 TTATTTATTTAT
21993753 AGTGTTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTATTTATTTATT
Found at i:21997887 original size:29 final size:31
Alignment explanation
Indices: 21997850--21997970 Score: 101
Period size: 30 Copynumber: 4.1 Consensus size: 31
21997840 GAAAAAAATA
* *
21997850 GGGTAAAAAATG-AAGTTTTAGAGAGTTT-G
1 GGGTCAAAAATGTAAGTTTTAGAAAGTTTAG
* *
21997879 GGGTC-AAAATGTGATTTTTAGAAAGTTTAG
1 GGGTCAAAAATGTAAGTTTTAGAAAGTTTAG
* * * *
21997909 GGGTC-AAAATGTGATTTTTGGAAAGTTTGG
1 GGGTCAAAAATGTAAGTTTTAGAAAGTTTAG
* *
21997939 GGGTC-AAAATGT-ATTTTTGGAAAGTTTGAG
1 GGGTCAAAAATGTAAGTTTTAGAAAGTTT-AG
21997969 GG
1 GG
21997971 TTAAAATATG
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
28 6 0.07
29 32 0.39
30 44 0.54
ACGTcount: A:0.31, C:0.02, G:0.31, T:0.35
Consensus pattern (31 bp):
GGGTCAAAAATGTAAGTTTTAGAAAGTTTAG
Found at i:21997914 original size:30 final size:29
Alignment explanation
Indices: 21997865--21997999 Score: 166
Period size: 30 Copynumber: 4.6 Consensus size: 29
21997855 AAAAATGAAG
*
21997865 TTTTAGAGAGTTTGGGGTCAAAATGTGAT
1 TTTTAGAAAGTTTGGGGTCAAAATGTGAT
21997894 TTTTAGAAAGTTTAGGGGTCAAAATGTGAT
1 TTTTAGAAAGTTT-GGGGTCAAAATGTGAT
*
21997924 TTTTGGAAAGTTTGGGGGTCAAAATGT-AT
1 TTTTAGAAAGTTT-GGGGTCAAAATGTGAT
* * *
21997953 TTTTGGAAAGTTTGAGGGTTAAAATATGAT
1 TTTTAGAAAGTTTG-GGGTCAAAATGTGAT
*
21997983 TTTT-GAGAAGTTCGGGG
1 TTTTAGA-AAGTTTGGGG
21998000 GCTTTATGTG
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
28 1 0.01
29 42 0.44
30 53 0.55
ACGTcount: A:0.29, C:0.03, G:0.30, T:0.38
Consensus pattern (29 bp):
TTTTAGAAAGTTTGGGGTCAAAATGTGAT
Found at i:21997937 original size:59 final size:59
Alignment explanation
Indices: 21997873--21998000 Score: 172
Period size: 59 Copynumber: 2.2 Consensus size: 59
21997863 AGTTTTAGAG
*
21997873 AGTTT-GGGGTCAAAATGTGATTTTTAGAAAGTTT-AGGGGTCAAAATGTGATTTTTGGAA
1 AGTTTGGGGGTCAAAATGT-ATTTTTAGAAAGTTTGA-GGGTCAAAATATGATTTTTGGAA
* *
21997932 AGTTTGGGGGTCAAAATGTATTTTTGGAAAGTTTGAGGGTTAAAATATGATTTTT-GAGA
1 AGTTTGGGGGTCAAAATGTATTTTTAGAAAGTTTGAGGGTCAAAATATGATTTTTGGA-A
*
21997991 AGTTCGGGGG
1 AGTTTGGGGG
21998001 CTTTATGTGC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
58 2 0.03
59 46 0.74
60 14 0.23
ACGTcount: A:0.29, C:0.03, G:0.31, T:0.37
Consensus pattern (59 bp):
AGTTTGGGGGTCAAAATGTATTTTTAGAAAGTTTGAGGGTCAAAATATGATTTTTGGAA
Found at i:21999012 original size:4 final size:4
Alignment explanation
Indices: 21999003--21999034 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
21998993 CTCAACTTCT
21999003 TTTA TTTA TTTA TTTA -TTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
21999035 ATGTAGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:21999024 original size:15 final size:15
Alignment explanation
Indices: 21999004--21999034 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21998994 TCAACTTCTT
21999004 TTATTTATTTATTTA
1 TTATTTATTTATTTA
21999019 TTATTTATTTATTTA
1 TTATTTATTTATTTA
21999034 T
1 T
21999035 ATGTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:21999662 original size:33 final size:34
Alignment explanation
Indices: 21999592--21999668 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
21999582 ATTTAAATTT
* * *
21999592 AATTTAAAATAAATTTAAACTCAAAATAAGTTCA
1 AATTTAAAATAAAATTAAACTCAAAATAAATTAA
*
21999626 AATTTAAAATAAAATTAAACT-TAAATAAATTAA
1 AATTTAAAATAAAATTAAACTCAAAATAAATTAA
21999659 AATTTAAAAT
1 AATTTAAAAT
21999669 TGAGTTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 19 0.49
34 20 0.51
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (34 bp):
AATTTAAAATAAAATTAAACTCAAAATAAATTAA
Found at i:21999668 original size:17 final size:16
Alignment explanation
Indices: 21999585--21999668 Score: 80
Period size: 17 Copynumber: 5.1 Consensus size: 16
21999575 ACTTCAAATT
*
21999585 TAAATTTAATTTAAAA
1 TAAATTAAATTTAAAA
* *
21999601 TAAATTTAAACTCAAAA
1 TAAA-TTAAATTTAAAA
*
21999618 TAAGTTCAAATTTAAAA
1 TAAATT-AAATTTAAAA
*
21999635 TAAAATTAAACTT-AAA
1 T-AAATTAAATTTAAAA
21999651 TAAATTAAAATTTAAAA
1 TAAATT-AAATTTAAAA
21999668 T
1 T
21999669 TGAGTTTAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
15 5 0.09
16 15 0.28
17 30 0.56
18 4 0.07
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (16 bp):
TAAATTAAATTTAAAA
Found at i:22000928 original size:17 final size:17
Alignment explanation
Indices: 22000906--22000938 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22000896 CTTGACCTTT
*
22000906 AACCTTTCATCTTCTTC
1 AACCTTTCATATTCTTC
22000923 AACCTTTCATATTCTT
1 AACCTTTCATATTCTT
22000939 GTAACTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.48
Consensus pattern (17 bp):
AACCTTTCATATTCTTC
Found at i:22023464 original size:18 final size:18
Alignment explanation
Indices: 22023435--22023478 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
22023425 AGATAAACTA
*
22023435 ACAAAT-AAAATGCAGTG
1 ACAAATAAAAATGCAATG
22023452 ACAAATAAAAATGCAATG
1 ACAAATAAAAATGCAATG
*
22023470 ACAACTAAA
1 ACAAATAAA
22023479 TAAAATGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.59, C:0.14, G:0.11, T:0.16
Consensus pattern (18 bp):
ACAAATAAAAATGCAATG
Found at i:22023485 original size:21 final size:19
Alignment explanation
Indices: 22023437--22023487 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
22023427 ATAAACTAAC
*
22023437 AAATAAAATGCAGTGACAA
1 AAATAAAATGCAATGACAA
*
22023456 ATA-AAAATGCAATGACAA
1 AAATAAAATGCAATGACAA
22023474 CTAAATAAAATGCA
1 --AAATAAAATGCA
22023488 TGTAACTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 14 0.54
19 2 0.08
20 2 0.08
21 8 0.31
ACGTcount: A:0.59, C:0.12, G:0.12, T:0.18
Consensus pattern (19 bp):
AAATAAAATGCAATGACAA
Found at i:22034162 original size:21 final size:21
Alignment explanation
Indices: 22034138--22034182 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
22034128 CAAGGAAGTG
*
22034138 GAAGATTGCCTCTGCAACATA
1 GAAGATGGCCTCTGCAACATA
22034159 GAAGATGGCCTCTGCAACATA
1 GAAGATGGCCTCTGCAACATA
22034180 GAA
1 GAA
22034183 AGCCTCTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (21 bp):
GAAGATGGCCTCTGCAACATA
Found at i:22043945 original size:17 final size:17
Alignment explanation
Indices: 22043925--22043967 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
22043915 TCGTATTCCT
*
22043925 ATTGTCATTACATTTTA
1 ATTGTCATTACATTTCA
*
22043942 ATTGTCATTGCATTTCA
1 ATTGTCATTACATTTCA
22043959 ATTTGTCAT
1 A-TTGTCAT
22043968 GGTATTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (17 bp):
ATTGTCATTACATTTCA
Found at i:22045836 original size:19 final size:21
Alignment explanation
Indices: 22045798--22045837 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
22045788 ATTGGGGACC
*
22045798 TCATTTTATTATTATCACATT
1 TCATTTTATAATTATCACATT
22045819 TCATTTT-TAATT-TCACATT
1 TCATTTTATAATTATCACATT
22045838 GTTGCTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.57
Consensus pattern (21 bp):
TCATTTTATAATTATCACATT
Found at i:22049513 original size:18 final size:17
Alignment explanation
Indices: 22049488--22049521 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22049478 TATTCTTTTT
22049488 CTAACTTTTATTGATTA
1 CTAACTTTTATTGATTA
*
22049505 CTAATCTTTTGTTGATT
1 CTAA-CTTTTATTGATT
22049522 TTCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTAACTTTTATTGATTA
Found at i:22072409 original size:12 final size:12
Alignment explanation
Indices: 22072373--22072424 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
22072363 CAGTCATTTA
*
22072373 AAAAAAAGAAA-
1 AAAAAGAGAAAG
22072384 AAAAAGTA-ATAAG
1 AAAAAG-AGA-AAG
22072397 AAAAAGAGAAAG
1 AAAAAGAGAAAG
*
22072409 AGAAAGAGAAAG
1 AAAAAGAGAAAG
22072421 AAAA
1 AAAA
22072425 TTTTGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
11 6 0.18
12 21 0.62
13 7 0.21
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:22075640 original size:3 final size:3
Alignment explanation
Indices: 22075632--22075658 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
22075622 GTTATTGTAT
22075632 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
22075659 AAGTGAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22079070 original size:16 final size:16
Alignment explanation
Indices: 22079049--22079109 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
22079039 GATTCTTAGA
22079049 TGTGAAAACTATAAAT
1 TGTGAAAACTATAAAT
* * *
22079065 TGTGAACACCATAAAAC
1 TGTGAAAACTAT-AAAT
* *
22079082 TATGAAAACTATATAT
1 TGTGAAAACTATAAAT
22079098 TGTG-AAACTATA
1 TGTGAAAACTATA
22079110 GGAGACTATA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
15 8 0.23
16 15 0.43
17 12 0.34
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (16 bp):
TGTGAAAACTATAAAT
Found at i:22081537 original size:18 final size:18
Alignment explanation
Indices: 22081516--22081551 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22081506 TCCGTTGTTC
22081516 TTGAAAAGTAAGTTGTGT
1 TTGAAAAGTAAGTTGTGT
*
22081534 TTGAAAAGTATGTTGTGT
1 TTGAAAAGTAAGTTGTGT
22081552 GATGTGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.42
Consensus pattern (18 bp):
TTGAAAAGTAAGTTGTGT
Found at i:22083763 original size:22 final size:22
Alignment explanation
Indices: 22083735--22083807 Score: 94
Period size: 22 Copynumber: 3.3 Consensus size: 22
22083725 AGGAGGAAGA
*
22083735 TATGTGGCAATTTATCTACAAT
1 TATGTGGCAGTTTATCTACAAT
**
22083757 TATGTGGCAGTTTATCTGTAAT
1 TATGTGGCAGTTTATCTACAAT
*
22083779 TATGTGGTC-GTTTATCGACAAT
1 TATGTGG-CAGTTTATCTACAAT
22083801 TATGTGG
1 TATGTGG
22083808 TGCTGCTTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
22 43 0.98
23 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.22, T:0.42
Consensus pattern (22 bp):
TATGTGGCAGTTTATCTACAAT
Found at i:22092734 original size:37 final size:37
Alignment explanation
Indices: 22092680--22092758 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22092670 AATGTCATTA
*
22092680 CATGAGCACTTCTAGATTG-AGCCCAAAACTATCACCG
1 CATGAGCACTTCCAGATTGCA-CCCAAAACTATCACCG
* *
22092717 CATGAGCACTTCCAGATTGCACCCAAAACTGTCGCCG
1 CATGAGCACTTCCAGATTGCACCCAAAACTATCACCG
22092754 CATGA
1 CATGA
22092759 ATATTTTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (37 bp):
CATGAGCACTTCCAGATTGCACCCAAAACTATCACCG
Found at i:22092864 original size:37 final size:37
Alignment explanation
Indices: 22092732--22092868 Score: 115
Period size: 37 Copynumber: 3.7 Consensus size: 37
22092722 GCACTTCCAG
* *
22092732 ATTGCACCCAA-AACTGTCGCCGCATGAATATTTTCGGA
1 ATTGCACCCAAGAACTATCGCTGCAT-AATATTTTC-GA
* *
22092770 A-TGCACCCAAG-ACTATCACTGCATAAATATTTTTCAA
1 ATTGCACCCAAGAACTATCGCTGCAT-AATA-TTTTCGA
* *
22092807 ATTGCA-TCTAGAACTATCGCTGCATAAGTATTCTTC-A
1 ATTGCACCCAAGAACTATCGCTGCATAA-TATT-TTCGA
*
22092844 ATTGCACCCAAGAA-TGTCGCTGCAT
1 ATTGCACCCAAGAACTATCGCTGCAT
22092869 GAACATGTCT
Statistics
Matches: 81, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
37 49 0.60
38 32 0.40
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (37 bp):
ATTGCACCCAAGAACTATCGCTGCATAATATTTTCGA
Found at i:22092889 original size:26 final size:26
Alignment explanation
Indices: 22092854--22092911 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
22092844 ATTGCACCCA
22092854 AGAA-TGTCGCTGCATGAACATGTCT
1 AGAATTGTCGCTGCATGAACATGTCT
*
22092879 AGAATTGTCGCTGCATGAACGTGTCT
1 AGAATTGTCGCTGCATGAACATGTCT
22092905 AGAATTG
1 AGAATTG
22092912 CACCCAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
AGAATTGTCGCTGCATGAACATGTCT
Found at i:22093735 original size:16 final size:16
Alignment explanation
Indices: 22093714--22093744 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22093704 TTGTGGATCC
22093714 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
22093730 CATTTTATCTTTATT
1 CATTTTACCTTTATT
22093745 TTTACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:22096051 original size:17 final size:17
Alignment explanation
Indices: 22096029--22096061 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22096019 GTAGTTGTAG
*
22096029 TTTATTGTCCCTGCATT
1 TTTATTGTCACTGCATT
22096046 TTTATTGTCACTGCAT
1 TTTATTGTCACTGCAT
22096062 CTACAATGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.21, G:0.12, T:0.52
Consensus pattern (17 bp):
TTTATTGTCACTGCATT
Found at i:22097169 original size:37 final size:38
Alignment explanation
Indices: 22097141--22097219 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
22097131 ATTTTCGGAA
22097141 TGCACCCAAG-ACTGTCGCTGCATAAATATTCTTCAAAT
1 TGCACCC-AGCACTGTCGCTGCATAAATATTCTTCAAAT
* * *
22097179 TGCATCCAGCACTGTCGCTGCATAAGTATTCTT-TAAT
1 TGCACCCAGCACTGTCGCTGCATAAATATTCTTCAAAT
22097216 TGCA
1 TGCA
22097220 TCTAGGAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 9 0.24
38 28 0.76
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (38 bp):
TGCACCCAGCACTGTCGCTGCATAAATATTCTTCAAAT
Found at i:22097237 original size:37 final size:38
Alignment explanation
Indices: 22097153--22097238 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 38
22097143 CACCCAAGAC
*
22097153 TGTCGCTGCATAAATATTCTTCAAATTGCATCCAGCAC
1 TGTCGCTGCATAAATATTCTTCAAATTGCATCCAGCAA
* * * *
22097191 TGTCGCTGCATAAGTATTCTT-TAATTGCATCTAGGAA
1 TGTCGCTGCATAAATATTCTTCAAATTGCATCCAGCAA
*
22097228 TGTCACTGCAT
1 TGTCGCTGCAT
22097239 GAACATGTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 22 0.52
38 20 0.48
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (38 bp):
TGTCGCTGCATAAATATTCTTCAAATTGCATCCAGCAA
Found at i:22098106 original size:16 final size:16
Alignment explanation
Indices: 22098085--22098115 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22098075 TTGTGGATCC
22098085 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
22098101 CATTTTATCTTTATT
1 CATTTTACCTTTATT
22098116 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:22103448 original size:18 final size:18
Alignment explanation
Indices: 22103420--22103539 Score: 134
Period size: 18 Copynumber: 6.7 Consensus size: 18
22103410 TAGAAGGAAT
* *
22103420 AGCATATTGGCTCATTGG
1 AGCATACTGGCTCATTTG
* **
22103438 AGCAGACTGGCTTGTTTG
1 AGCATACTGGCTCATTTG
*
22103456 AGCATACTGGCTC-GTTG
1 AGCATACTGGCTCATTTG
*
22103473 AGGCATACTGGCTCATTTA
1 A-GCATACTGGCTCATTTG
*
22103492 AGCATATTGGCTCATTTG
1 AGCATACTGGCTCATTTG
* *
22103510 AGCATACTGGCTCGTTGG
1 AGCATACTGGCTCATTTG
22103528 AGCATACTGGCT
1 AGCATACTGGCT
22103540 TGTAAGAGAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
17 4 0.05
18 78 0.92
19 3 0.04
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (18 bp):
AGCATACTGGCTCATTTG
Found at i:22103485 original size:54 final size:54
Alignment explanation
Indices: 22103420--22103539 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 54
22103410 TAGAAGGAAT
* * **
22103420 AGCATATTGGCTCATTGGAGCAGACTGGCTTGTTTGAGCATACTGGCTCGTT-G
1 AGCATACTGGCTCATTGAAGCAGACTGGCTCATTTGAGCATACTGGCTCGTTGG
* * *
22103473 AGGCATACTGGCTCATTTAAGCATATTGGCTCATTTGAGCATACTGGCTCGTTGG
1 A-GCATACTGGCTCATTGAAGCAGACTGGCTCATTTGAGCATACTGGCTCGTTGG
22103528 AGCATACTGGCT
1 AGCATACTGGCT
22103540 TGTAAGAGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 55 0.95
55 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (54 bp):
AGCATACTGGCTCATTGAAGCAGACTGGCTCATTTGAGCATACTGGCTCGTTGG
Found at i:22106917 original size:21 final size:21
Alignment explanation
Indices: 22106891--22106943 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
22106881 GCACACTCAA
22106891 ATGCATCCACAACAAAGCCAG
1 ATGCATCCACAACAAAGCCAG
22106912 ATGCATCCACAACAAAGCCAG
1 ATGCATCCACAACAAAGCCAG
22106933 ATGCATCCACA
1 ATGCATCCACA
22106944 CCAGGATCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.42, C:0.34, G:0.13, T:0.11
Consensus pattern (21 bp):
ATGCATCCACAACAAAGCCAG
Found at i:22112418 original size:13 final size:14
Alignment explanation
Indices: 22112389--22112418 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22112379 TTTAGTACAT
22112389 TGACATTTAACCTC
1 TGACATTTAACCTC
22112403 TGACATTTAA-CTC
1 TGACATTTAACCTC
22112416 TGA
1 TGA
22112419 TTGCATTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:22118841 original size:19 final size:19
Alignment explanation
Indices: 22118788--22118842 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
22118778 TAACAATAGC
*
22118788 GTACGACAGCAACAACGAT
1 GTACGACAGCAACGACGAT
* *
22118807 GTGCGGCGATGACAACGACGAT
1 GTACGAC-A-G-CAACGACGAT
22118829 GTACGACAGCAACG
1 GTACGACAGCAACG
22118843 TTGGTGCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
19 10 0.36
20 2 0.07
21 2 0.07
22 14 0.50
ACGTcount: A:0.35, C:0.25, G:0.29, T:0.11
Consensus pattern (19 bp):
GTACGACAGCAACGACGAT
Found at i:22126578 original size:23 final size:22
Alignment explanation
Indices: 22126548--22126591 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
22126538 AAAAAAATAA
*
22126548 AATTAACCCAATTTAGTTAATT
1 AATTAACCCAAATTAGTTAATT
*
22126570 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAGTTAAT
22126592 GAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAGTTAATT
Found at i:22135644 original size:13 final size:14
Alignment explanation
Indices: 22135617--22135646 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22135607 TTCAGTACAT
22135617 TGACATTTAAACTC
1 TGACATTTAAACTC
22135631 TGACATTT-AACTC
1 TGACATTTAAACTC
22135644 TGA
1 TGA
22135647 TTGCATTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAAACTC
Found at i:22139713 original size:11 final size:11
Alignment explanation
Indices: 22139699--22139742 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
22139689 ATATTTTTTT
22139699 TTTCTTTTATC
1 TTTCTTTTATC
*
22139710 TTTCTCTTTCTC
1 TTTCT-TTTATC
*
22139722 TTTCTTTTCTC
1 TTTCTTTTATC
*
22139733 TTTTTTTTAT
1 TTTCTTTTAT
22139743 GCGACTGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTCTTTTATC
Found at i:22139719 original size:17 final size:18
Alignment explanation
Indices: 22139699--22139742 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
22139689 ATATTTTTTT
22139699 TTTCTTTTATC-TTTCTC
1 TTTCTTTTATCTTTTCTC
*
22139716 TTTCTCTT-TCTTTTCTC
1 TTTCTTTTATCTTTTCTC
*
22139733 TTTTTTTTAT
1 TTTCTTTTAT
22139743 GCGACTGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTCTTTTATCTTTTCTC
Found at i:22140927 original size:14 final size:14
Alignment explanation
Indices: 22140908--22140943 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
22140898 CCTAATAGTG
22140908 TGGTGCAATGAAAA
1 TGGTGCAATGAAAA
22140922 TGGTGCAATGAAAA
1 TGGTGCAATGAAAA
22140936 TGAGTGCA
1 TG-GTGCA
22140944 TTGGTTACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.39, C:0.08, G:0.31, T:0.22
Consensus pattern (14 bp):
TGGTGCAATGAAAA
Found at i:22150437 original size:18 final size:18
Alignment explanation
Indices: 22150397--22150444 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
22150387 TTGCAGTTTG
* *
22150397 TTGTGGCTGCATGTGAGC
1 TTGTGGTTGCATCTGAGC
22150415 TTGTGGTTGCATCTG-GC
1 TTGTGGTTGCATCTGAGC
*
22150432 TATGTGCTTGCAT
1 T-TGTGGTTGCAT
22150445 TTGTTCAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.10, C:0.17, G:0.33, T:0.40
Consensus pattern (18 bp):
TTGTGGTTGCATCTGAGC
Found at i:22155934 original size:31 final size:31
Alignment explanation
Indices: 22155896--22155959 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
22155886 CAATGAAGCC
22155896 ATGCGAATCTTAGAGAGAATCGCGCAAAATG
1 ATGCGAATCTTAGAGAGAATCGCGCAAAATG
22155927 ATGCGAATCTTAGAGAGAATCGCGCAAAATG
1 ATGCGAATCTTAGAGAGAATCGCGCAAAATG
22155958 AT
1 AT
22155960 TATCAGTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (31 bp):
ATGCGAATCTTAGAGAGAATCGCGCAAAATG
Found at i:22162199 original size:3 final size:3
Alignment explanation
Indices: 22162191--22162254 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
22162181 TGAAGGTGTT
*
22162191 GAA GAA GAA -AA GAA -AA G-A GAA AAA GAA GGAA G-A GAA G-A GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA
*
22162232 GGAA AAA GAA GAA GAA GAA GAA G
1 -GAA GAA GAA GAA GAA GAA GAA G
22162255 TTGTTCTGAC
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
2 10 0.20
3 34 0.68
4 6 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22162227 original size:30 final size:29
Alignment explanation
Indices: 22162193--22162252 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
22162183 AAGGTGTTGA
22162193 AGAAGA-AAAGAAAAGAGAAAAAGAAGGAAG
1 AGAAGAGAAAGAAAA-AGAAAAAGAA-GAAG
* *
22162223 AGAAGAGAAGGAAAAAGAAGAAGAAGAAG
1 AGAAGAGAAAGAAAAAGAAAAAGAAGAAG
22162252 A
1 A
22162253 AGTTGTTCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 5 0.19
30 15 0.56
31 7 0.26
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (29 bp):
AGAAGAGAAAGAAAAAGAAAAAGAAGAAG
Found at i:22179679 original size:42 final size:41
Alignment explanation
Indices: 22179627--22179867 Score: 331
Period size: 42 Copynumber: 5.8 Consensus size: 41
22179617 ATCGCATTCA
*
22179627 GAGGCCCATTTACTTTTCATTGCATTTAGAGCCCTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGCCC-AGGTGTG
*
22179669 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGA-GCCCAGGTGTG
*
22179711 GAGG-CTCATTTACTTTTCATTGTATTTAGAGGCCCAGGTGTG
1 GAGGTC-CATTTACTTTTCATTGCATTTAGA-GCCCAGGTGTG
**
22179753 GAGGTCCATTTACTTTTCATTGCATTCGGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAG-CCCAGGTGTG
* **
22179795 GAGGTTCATTTACTTTTCATTGCATTCGGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAG-CCCAGGTGTG
* *
22179837 GAGGTTCATTTACTTTTCATTGCAATTAGAG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAG
22179868 GCCTAAGCAT
Statistics
Matches: 184, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
41 2 0.01
42 177 0.96
43 5 0.03
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
GAGGTCCATTTACTTTTCATTGCATTTAGAGCCCAGGTGTG
Found at i:22179685 original size:70 final size:70
Alignment explanation
Indices: 22179572--22179704 Score: 205
Period size: 70 Copynumber: 1.9 Consensus size: 70
22179562 AAGGAAAGCA
* *
22179572 TTCATTGCATTTACAGGCTCAGGTGTGGAGGTTCATTTACTTTTCATCGCATTCAGAGGCCCATT
1 TTCATTGCATTTACAGCCTCAGGTGTGGAGGTCCATTTACTTTTCATCGCATTCAGAGGCCCATT
22179637 TACTT
66 TACTT
* * *
22179642 TTCATTGCATTTAGAGCC-CTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCA
1 TTCATTGCATTTACAGCCTC-AGGTGTGGAGGTCCATTTACTTTTCATCGCATTCAGAGGCCCA
22179705 AGTGTGGAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 1 0.02
70 56 0.98
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (70 bp):
TTCATTGCATTTACAGCCTCAGGTGTGGAGGTCCATTTACTTTTCATCGCATTCAGAGGCCCATT
TACTT
Found at i:22179811 original size:126 final size:126
Alignment explanation
Indices: 22179627--22179870 Score: 373
Period size: 126 Copynumber: 1.9 Consensus size: 126
22179617 ATCGCATTCA
*
22179627 GAGGCCCATTTACTTTTCATTGCATTTAGAGCCCTAGGTGTGGAGGTCCATTTACTTTTCATTGC
1 GAGGCCCATTTACTTTTCATTGCATTCAGAGCCCTAGGTGTGGAGGTCCATTTACTTTTCATTGC
* * * *
22179692 ATTTAGAGGCCCAAGTGTGGAGGCTCATTTACTTTTCATTGTATTTAGAGGCCCAGGTGTG
66 ATTCAGAGACCCAAGTGTGGAGGCTCATTTACTTTTCATTGCAATTAGAGGCCCAGGTGTG
* * *
22179753 GAGGTCCATTTACTTTTCATTGCATTCGGAGACCC-AGGTGTGGAGGTTCATTTACTTTTCATTG
1 GAGGCCCATTTACTTTTCATTGCATTCAGAG-CCCTAGGTGTGGAGGTCCATTTACTTTTCATTG
* * *
22179817 CATTCGGAGACCCAGGTGTGGAGGTTCATTTACTTTTCATTGCAATTAGAGGCC
65 CATTCAGAGACCCAAGTGTGGAGGCTCATTTACTTTTCATTGCAATTAGAGGCC
22179871 TAAGCATAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
126 103 0.97
127 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (126 bp):
GAGGCCCATTTACTTTTCATTGCATTCAGAGCCCTAGGTGTGGAGGTCCATTTACTTTTCATTGC
ATTCAGAGACCCAAGTGTGGAGGCTCATTTACTTTTCATTGCAATTAGAGGCCCAGGTGTG
Found at i:22180278 original size:3 final size:3
Alignment explanation
Indices: 22180272--22180299 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
22180262 CATCATCATC
22180272 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
22180300 GGGTTTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:22180890 original size:52 final size:52
Alignment explanation
Indices: 22180834--22181332 Score: 212
Period size: 52 Copynumber: 10.0 Consensus size: 52
22180824 TATTTTTAGT
* * *
22180834 TATTTTAAAGAAAAAGTTTAAATTTTTAAATAAATTTTTTATTTTTTTTAAC
1 TATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
* * * * * * *
22180886 TATTTCAAA-ATAAAAATTTGATTTTTTAAGTAAAATAGTGATTTTCTTTAA-
1 TATTTTAAAGA-AAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
* * * **
22180937 -A----AAATAAAAAGTTTATATTTTTAAAAATAAAA-ATT--TATTTTTTAGT
1 TATTTTAAAGAAAAAGTTTAAATTTTT--AAATAAAATATTGATTTTTTTTAAC
* * * *
22180983 TATTTTAAAGAAAAAATTTTAAATTTTTAAACAAAATTTTGATATTTTTTAAC
1 TATTTTAAAG-AAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
** * * * * *
22181036 TATTTCGGAA-TAAAAGTTTAGATTTTTAAGTAAAATAGTGA-TTTTCTTAA-
1 TATTT-TAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
** * * * **
22181086 -A--GAAAAGAGAACGTTTATATTTTTAAAAATAAAA-ATCTG---TTTTTTAGT
1 TATTTTAAAGAAAAAGTTTAAATTTTT--AAATAAAATAT-TGATTTTTTTTAAC
* * * *
22181134 TATTTTAAAGAAAAACTTTAAATTTTTAAATAAAGTTTTGATTTTTTTAAAC
1 TATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
** ** * * * *
22181186 TATTTCGAATTAAAAGTTTGAATTTTTAAGTAAAATAATGATTTTATTTAA-
1 TATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
* ** *
22181237 -A---AAAAGAGGAAGTTTATATTTTTAAAAATAAAATA-TG---TTTTTTAA-
1 TATTTTAAAGAAAAAGTTTAAATTTTT--AAATAAAATATTGATTTTTTTTAAC
* * * *
22181282 TGATTTTAAAGAAAAATTTTAAAATTTTAAATAAAGTTTTGATTTTTTTTA
1 T-ATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTA
22181333 GTTATTTCGA
Statistics
Matches: 320, Mismatches: 89, Indels: 76
0.66 0.18 0.16
Matches are distributed among these distances:
45 14 0.04
46 17 0.05
47 38 0.12
48 18 0.06
49 31 0.10
50 26 0.08
51 30 0.09
52 130 0.41
53 14 0.04
54 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.46
Consensus pattern (52 bp):
TATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAATATTGATTTTTTTTAAC
Found at i:22180966 original size:23 final size:21
Alignment explanation
Indices: 22180892--22180980 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 21
22180882 TAACTATTTC
22180892 AAAATAAAAATTTGATTTTTT-
1 AAAATAAAAATTT-ATTTTTTA
* * *
22180913 -AAGTAAAATAGTGATTTTCTTTAA
1 AAAATAAAA-ATTTA-TTT-TTT-A
22180937 AAAATAAAAAGTTTATATTTTTA
1 AAAATAAAAA-TTTAT-TTTTTA
22180960 AAAATAAAAATTTATTTTTTA
1 AAAATAAAAATTTATTTTTTA
22180981 GTTATTTTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
20 8 0.15
21 11 0.20
22 8 0.15
23 11 0.20
24 5 0.09
25 11 0.20
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (21 bp):
AAAATAAAAATTTATTTTTTA
Found at i:22180968 original size:22 final size:22
Alignment explanation
Indices: 22180936--22180980 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
22180926 ATTTTCTTTA
*
22180936 AAAAATAAAAAGTTTATATTTTT
1 AAAAATAAAAAATTTAT-TTTTT
22180959 AAAAAT-AAAAATTTATTTTTT
1 AAAAATAAAAAATTTATTTTTT
22180980 A
1 A
22180981 GTTATTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
22 9 0.43
23 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AAAAATAAAAAATTTATTTTTT
Found at i:22181018 original size:21 final size:22
Alignment explanation
Indices: 22180985--22181031 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 22
22180975 TTTTTAGTTA
22180985 TTTTAAAGAAAAAATTTT-AAAT
1 TTTTAAAG-AAAAATTTTGAAAT
* *
22181007 TTTTAAA-CAAAATTTTGATAT
1 TTTTAAAGAAAAATTTTGAAAT
22181028 TTTT
1 TTTT
22181032 TAACTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 8 0.36
21 7 0.32
22 7 0.32
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTTAAAGAAAAATTTTGAAAT
Found at i:22181048 original size:150 final size:148
Alignment explanation
Indices: 22180717--22181397 Score: 855
Period size: 150 Copynumber: 4.5 Consensus size: 148
22180707 GATTTTGGAA
* * * *
22180717 AAAGTTTTGGTTCTTTTTAAATAATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATT
1 AAAGTTTTGATTTTTTTTAACT-ATTTCGAAATAAAA-ATTTGATTTTTAAGTAAAATAGTGATT
* * *
22180782 TTCTTT-AAGAAGAGAAAGTTTATATTTTTAGAAATAAAAATCTA-TTTTTAGTTATTTTAAAGA
64 TTCTTTAAAAAAGAAAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGA
*
22180845 AAAAGTTTAAATTTTTAAAT
129 AAAATTTTAAATTTTTAAAT
* * *
22180865 AAATTTTTTATTTTTTTTAACTATTTCAAAATAAAAATTTGATTTTTTAAGTAAAATAGTGATTT
1 AAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAATTTGA-TTTTTAAGTAAAATAGTGATTT
* *
22180930 TCTTTAAAAAATAAAAAGTTTATATTTTTAAAAATAAAAATTTATTTTTTAGTTATTTTAAAGAA
65 TCTTTAAAAAAGAAAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAG-A
*
22180995 AAAATTTTAAATTTTTAAAC
129 AAAATTTTAAATTTTTAAAT
* * * *
22181015 AAAATTTTGATATTTTTTAACTATTTCGGAATAAAAGTTTAGATTTTTAAGTAAAATAGTGATTT
1 AAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAATTT-GATTTTTAAGTAAAATAGTGATTT
* * * *
22181080 TCTTAAAGAAAAGAGAACGTTTATATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGA
65 TCTTTAA-AAAAGAAAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGA
*
22181145 AAAACTTTAAATTTTTAAAT
129 AAAATTTTAAATTTTTAAAT
* * * *
22181165 AAAGTTTTGATTTTTTTAAACTATTTCGAATTAAAAGTTTGAATTTTTAAGTAAAATAATGATTT
1 AAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAATTTG-ATTTTTAAGTAAAATAGTGATTT
* ** * * * *
22181230 TATTTAAAAAAAGAGGAAGTTTATATTTTTAAAAAT-AAAATATGTTTTTTAATGATTTTAAAGA
65 TCTTT-AAAAAAGAAAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGA
*
22181294 AAAATTTTAAAATTTTAAAT
129 AAAATTTTAAATTTTTAAAT
** * * * *
22181314 AAAGTTTTGATTTTTTTTAGTTATTTCGAAATAAAAATTTTGATTTTGAAATAAAGTTGTGATTT
1 AAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAA-TTTGATTTTTAAGTAAAATAGTGATTT
*
22181379 TGTTTTAATCAAAAGAAAA
65 T-CTTTAA--AAAAGAAAA
22181398 TTTTTGATTT
Statistics
Matches: 465, Mismatches: 56, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
146 5 0.01
147 40 0.09
148 50 0.11
149 115 0.25
150 193 0.42
151 62 0.13
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (148 bp):
AAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAATTTGATTTTTAAGTAAAATAGTGATTTT
CTTTAAAAAAGAAAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAA
AATTTTAAATTTTTAAAT
Found at i:22182841 original size:238 final size:237
Alignment explanation
Indices: 22182416--22182883 Score: 769
Period size: 238 Copynumber: 2.0 Consensus size: 237
22182406 AAAATAATAA
*
22182416 TAATGATAAAAGATCGAATAAGTTGAAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
1 TAATAATAAAAGATCGAATAAGTTGAAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
*
22182481 TTAGGTTTTTCTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGATATTTTACTAGAATTA
66 TTAGGTATTTCTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGATATTTTACTAGAATTA
* *
22182546 TTTAGGTATCCTTTAGGGTTCTCGTTAGAAGTAAAAGTCTCTAACTTAAGCTTTAAATTAGATAA
131 TTTAGGTATCCTTTAGGGTTCTCGTTAGAAGTAAAAATATCTAACTTAAGCTTTAAATTAGATAA
22182611 GTTTGGTGAACACGTATTAATCAAGTTACAAGTAAATCGGAG
196 GTTTGGTGAACACGTATTAATCAAGTTACAAGTAAATCGGAG
* * *
22182653 TAATAATAAAAGATTGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTTGTAATTT
1 TAATAATAAAAGATCGAATAAGTTGAAGATGAATTTTAATATTTCTCTTAATTCATTAGTAA--T
* *
22182718 TTTTAGGTATTT-TAGTATTCTAAAATATAATTAATTTTAAGAATTGAA-AGTATTTTACTAGAA
64 TTTTAGGTATTTCTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGA-TATTTTACTAGAA
* * *
22182781 TTATTTAGGTATCCTTTAGGGTTCTCGTTAGAGGTAAAAATATCTAATTTAAGTTTTAAATTAGA
128 TTATTTAGGTATCCTTTAGGGTTCTCGTTAGAAGTAAAAATATCTAACTTAAGCTTTAAATTAGA
* *
22182846 TAAGTTTGGTGAACACGTCTTAGTCAAGTTACAAGTAA
193 TAAGTTTGGTGAACACGTATTAATCAAGTTACAAGTAA
22182884 GGTGAAGGTA
Statistics
Matches: 214, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
237 59 0.28
238 143 0.67
239 12 0.06
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (237 bp):
TAATAATAAAAGATCGAATAAGTTGAAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
TTAGGTATTTCTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGATATTTTACTAGAATTA
TTTAGGTATCCTTTAGGGTTCTCGTTAGAAGTAAAAATATCTAACTTAAGCTTTAAATTAGATAA
GTTTGGTGAACACGTATTAATCAAGTTACAAGTAAATCGGAG
Found at i:22209121 original size:18 final size:17
Alignment explanation
Indices: 22209098--22209140 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
22209088 GGCAATATCT
22209098 TCTTCTTTGTCTTCCTTC
1 TCTTCTTTGTCTT-CTTC
*
22209116 TCTTCTTTTTCTTCTTC
1 TCTTCTTTGTCTTCTTC
*
22209133 TTTTCTTT
1 TCTTCTTT
22209141 CTTCTGCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (17 bp):
TCTTCTTTGTCTTCTTC
Found at i:22219323 original size:18 final size:18
Alignment explanation
Indices: 22219300--22219350 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
22219290 CAGAAGGAAT
*
22219300 AGCATACTGGCTCGTTTG
1 AGCATACTGGCTCGTTGG
*
22219318 AGCATACTAGCTCGTTGG
1 AGCATACTGGCTCGTTGG
*
22219336 AGCATACTGACTCGT
1 AGCATACTGGCTCGT
22219351 AAGAGCATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (18 bp):
AGCATACTGGCTCGTTGG
Found at i:22219356 original size:18 final size:18
Alignment explanation
Indices: 22219300--22219358 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
22219290 CAGAAGGAAT
* *
22219300 AGCATACTGGCTCGTTTG
1 AGCATACTGACTCGTTAG
*
22219318 AGCATACT-AGCTCGTTGG
1 AGCATACTGA-CTCGTTAG
*
22219336 AGCATACTGACTCGTAAG
1 AGCATACTGACTCGTTAG
22219354 AGCAT
1 AGCAT
22219359 TTCTAGATCG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
18 34 0.97
19 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (18 bp):
AGCATACTGACTCGTTAG
Found at i:22227602 original size:18 final size:18
Alignment explanation
Indices: 22227579--22227621 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22227569 ATTCAAATTG
22227579 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
22227597 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
22227615 TAATTAA
1 TAATTAA
22227622 AAACTTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:22230402 original size:48 final size:48
Alignment explanation
Indices: 22230344--22230440 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
22230334 ATTTTTTCTT
* *
22230344 TCTATGCATCATCCTCCAGTCAAAACATGGTGCATATAACTAGGTAAC
1 TCTATACATCAGCCTCCAGTCAAAACATGGTGCATATAACTAGGTAAC
* * * * *
22230392 TCTATACATCAGCCTCCGGTCAGAACATGGTGTATGTAACTTGGTAAC
1 TCTATACATCAGCCTCCAGTCAAAACATGGTGCATATAACTAGGTAAC
22230440 T
1 T
22230441 TTTTTGCTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (48 bp):
TCTATACATCAGCCTCCAGTCAAAACATGGTGCATATAACTAGGTAAC
Found at i:22230669 original size:17 final size:18
Alignment explanation
Indices: 22230636--22230681 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
22230626 TAGAAGTGGT
*
22230636 AATAATTGTACATTTAA-A
1 AATAATTATA-ATTTAATA
22230654 AATAATTATAATTTAATA
1 AATAATTATAATTTAATA
22230672 AA-AATTATAA
1 AATAATTATAA
22230682 AAATTATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
AATAATTATAATTTAATA
Found at i:22230704 original size:27 final size:26
Alignment explanation
Indices: 22230657--22230708 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
22230647 ATTTAAAAAT
22230657 AATTATAATTTAATAAAAATTATAAA
1 AATTATAATTTAATAAAAATTATAAA
*
22230683 AATTATATGTTTAA-AAATAATTATAA
1 AATTATA-ATTTAATAAA-AATTATAA
22230709 TTTAATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
AATTATAATTTAATAAAAATTATAAA
Found at i:22238012 original size:21 final size:21
Alignment explanation
Indices: 22237974--22238016 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22237964 GAATTCTATT
* **
22237974 GATACAACTCTAGGTTCTACC
1 GATACAACTCGAACTTCTACC
22237995 GATACAACTCGAACTTCTACC
1 GATACAACTCGAACTTCTACC
22238016 G
1 G
22238017 GTAGAACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (21 bp):
GATACAACTCGAACTTCTACC
Found at i:22244769 original size:19 final size:19
Alignment explanation
Indices: 22244745--22244790 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
22244735 TAAAAATTGA
22244745 AAAAAATTTAAATTTT-TTT
1 AAAAAATTT-AATTTTATTT
* *
22244764 AAAAAAATTGATTTTATTT
1 AAAAAATTTAATTTTATTT
22244783 AAAAAATT
1 AAAAAATT
22244791 GAAAAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AAAAAATTTAATTTTATTT
Found at i:22244777 original size:18 final size:18
Alignment explanation
Indices: 22244756--22244792 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
22244746 AAAAATTTAA
22244756 ATTTT-TTTAAAAAAATTG
1 ATTTTATTT-AAAAAATTG
22244774 ATTTTATTTAAAAAATTG
1 ATTTTATTTAAAAAATTG
22244792 A
1 A
22244793 AAAAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
ATTTTATTTAAAAAATTG
Found at i:22244804 original size:12 final size:11
Alignment explanation
Indices: 22244783--22244840 Score: 55
Period size: 11 Copynumber: 4.9 Consensus size: 11
22244773 GATTTTATTT
22244783 AAAAAATTGAA
1 AAAAAATTGAA
22244794 AAAATAATTGAATTA
1 AAAA-AATTG-A--A
22244809 AAAAATATTG-A
1 AAAAA-ATTGAA
*
22244820 AAAAAATTCAA
1 AAAAAATTGAA
22244831 AAAAAATTGA
1 AAAAAATTGA
22244841 TCCACATGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
10 3 0.08
11 20 0.51
12 5 0.13
13 1 0.03
14 1 0.03
15 9 0.23
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (11 bp):
AAAAAATTGAA
Found at i:22244818 original size:15 final size:17
Alignment explanation
Indices: 22244787--22244820 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
22244777 TTATTTAAAA
22244787 AATTGAAAAAATAATTG
1 AATTGAAAAAATAATTG
22244804 AATT-AAAAAAT-ATTG
1 AATTGAAAAAATAATTG
22244819 AA
1 AA
22244821 AAAAATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (17 bp):
AATTGAAAAAATAATTG
Found at i:22245259 original size:17 final size:15
Alignment explanation
Indices: 22245234--22245302 Score: 54
Period size: 16 Copynumber: 4.6 Consensus size: 15
22245224 AATCAAAGTG
*
22245234 ATTTCATTTAGTTTTAT
1 ATTTTATTTA-TTTT-T
22245251 ATTTTATTTATTTTT
1 ATTTTATTTATTTTT
*
22245266 A--TT-TGTATTTTT
1 ATTTTATTTATTTTT
* *
22245278 ATTGTTAGTTGTTTTT
1 ATT-TTATTTATTTTT
22245294 ATTTTATTT
1 ATTTTATTT
22245303 TATTATGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
12 9 0.21
13 2 0.05
15 9 0.21
16 13 0.31
17 9 0.21
ACGTcount: A:0.19, C:0.01, G:0.07, T:0.72
Consensus pattern (15 bp):
ATTTTATTTATTTTT
Done.