Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 72 of 193
Found at i:23100614 original size:69 final size:69
Alignment explanation
Indices: 23100517--23100682 Score: 217
Period size: 69 Copynumber: 2.4 Consensus size: 69
23100507 TTTATCACAA
* * * *
23100517 CACATATTAATCACATTTAGTCACATTTAATCACATGAATGTT-TCAACATTTATCACATCACAT
1 CACAT-TTAATCACATTTAATCATATTTAATCACATGAATATTAT-AACATTAATCACATCACAT
23100581 ATTAAT
64 ATTAAT
* * *
23100587 TACATTTAGTCACATTTAATCATATTTAATCACATGAATATTATAGCATTAATCACATCACATAT
1 CACATTTAATCACATTTAATCATATTTAATCACATGAATATTATAACATTAATCACATCACATAT
23100652 TAAT
66 TAAT
* * *
23100656 CGCATATAATCACATTTAATGATATTT
1 CACATTTAATCACATTTAATCATATTT
23100683 TCTGATAAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 78 0.94
70 5 0.06
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (69 bp):
CACATTTAATCACATTTAATCATATTTAATCACATGAATATTATAACATTAATCACATCACATAT
TAAT
Found at i:23100668 original size:26 final size:25
Alignment explanation
Indices: 23100612--23100670 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
23100602 TTAATCATAT
* *
23100612 TTAATCACATGA-ATATT-ATAGCA
1 TTAATCACATCACATATTAATCGCA
23100635 TTAATCACATCACATATTAATCGCA
1 TTAATCACATCACATATTAATCGCA
23100660 TATAATCACAT
1 T-TAATCACAT
23100671 TTAATGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 11 0.35
24 5 0.16
25 6 0.19
26 9 0.29
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (25 bp):
TTAATCACATCACATATTAATCGCA
Found at i:23100675 original size:128 final size:127
Alignment explanation
Indices: 23100407--23100675 Score: 380
Period size: 128 Copynumber: 2.1 Consensus size: 127
23100397 ATCATATTTA
* * **
23100407 ATAATCACA-TTAGTTACATGAATATTTCAGTATTTATCACATCACATATTAATCACATTTAGTC
1 ATAATCACATTTAATCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTTAGTC
* *
23100471 ACATTAATCACATTTGATCACATGAATATTTCAACATTTATCACAACACATATTAATCACAT
66 ACATTAATCACATTTAATCACATGAATATTTCAACATTAATCACAACACATATTAATCACAT
* * * *
23100533 TTAGTCACATTTAATCACATGAATGTTTCAACATTTATCACATCACATATTAATTACATTTAGTC
1 ATAATCACATTTAATCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTTAGTC
* * * *
23100598 ACATTTAATCATATTTAATCACATGAATATTAT-AGCATTAATCACATCACATATTAATCGCAT
66 ACA-TTAATCACATTTAATCACATGAATATT-TCAACATTAATCACAACACATATTAATCACAT
23100661 ATAATCACATTTAAT
1 ATAATCACATTTAAT
23100676 GATATTTTCT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
126 7 0.06
127 52 0.42
128 64 0.52
129 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (127 bp):
ATAATCACATTTAATCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTTAGTC
ACATTAATCACATTTAATCACATGAATATTTCAACATTAATCACAACACATATTAATCACAT
Found at i:23101188 original size:36 final size:36
Alignment explanation
Indices: 23101145--23101396 Score: 354
Period size: 36 Copynumber: 7.1 Consensus size: 36
23101135 ATAGTCACTG
* * *
23101145 TCACATGGCATGAAAAACAGACCCACATATTTACTG
1 TCACATGGCATGAATAACATACCCACATATTTACTA
*
23101181 TCACATGGCATGAATAACACT-CCCACATATTTACCA
1 TCACATGGCATGAATAACA-TACCCACATATTTACTA
23101217 TCACATGGCATGAATAACATACCCACATATTTACTA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
*
23101253 TCTCATGGCATGAATAACATACCCACATATTTACTA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
*
23101289 TCACATGGCATGAATAACATACCTACATA-TT--TA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
* *
23101322 -C-CATGGCATGAATAACATACTCACATATTTACTG
1 TCACATGGCATGAATAACATACCCACATATTTACTA
* * *
23101356 TCACATGACATGAATAACATACTCACATATTTACTT
1 TCACATGGCATGAATAACATACCCACATATTTACTA
23101392 TCACA
1 TCACA
23101397 ATAGTCATCA
Statistics
Matches: 196, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
31 24 0.12
32 3 0.02
33 2 0.01
34 1 0.01
35 4 0.02
36 162 0.83
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (36 bp):
TCACATGGCATGAATAACATACCCACATATTTACTA
Found at i:23103742 original size:33 final size:33
Alignment explanation
Indices: 23103646--23103743 Score: 81
Period size: 33 Copynumber: 3.0 Consensus size: 33
23103636 ATGTAATTTC
* * * * *
23103646 ACAGTACGCTCATAAGAGCTAATTAGTTAGTAT
1 ACAGTAAGCTCGTATGAGCTAATTAATCAGTAT
* * * ** *
23103679 -CTAGTATGCTCGTATGAGTTGAGCATTCAGTAT
1 AC-AGTAAGCTCGTATGAGCTAATTAATCAGTAT
23103712 ACAGTAAGCTCGTATGAGCTAATTAATCAGTA
1 ACAGTAAGCTCGTATGAGCTAATTAATCAGTA
23103744 AACAATATAC
Statistics
Matches: 48, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
32 1 0.02
33 46 0.96
34 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (33 bp):
ACAGTAAGCTCGTATGAGCTAATTAATCAGTAT
Found at i:23103777 original size:32 final size:32
Alignment explanation
Indices: 23103712--23104051 Score: 342
Period size: 32 Copynumber: 10.6 Consensus size: 32
23103702 CATTCAGTAT
* * * *
23103712 ACAGTAAGCTCGTATGAGCTAATTAATCAGTAA
1 ACAGTATGCTCGTAAGAGCT-ATCAATCTGTAA
* * * *
23103745 ACAATATACTCATAAGAGTTATCAATCTGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* *
23103777 ACAGTATGCTCGTAAGAGCTATTAATATGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* * *
23103809 CCAATATGCTCGTAAGAGCTATCATTCTGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* * *
23103841 TCAGTATGCTCATAAGAGCTAGCAATCTGT-A
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
*
23103872 ACTAGTATACTCGTAAGAGCTATCAATCTGTAA
1 AC-AGTATGCTCGTAAGAGCTATCAATCTGTAA
* * *
23103905 CCAGTATGCTCGTAAGAGCTATTAATATGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* *
23103937 TCAGTATGCTCGTAAAAGCTATCAATCTGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* * * *
23103969 TCAGTATGCTCATAAGAGC-ATCAAACTATAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* * * * *
23104000 CCAATATGCTAGTAAGAGCTATTAATATGTAA
1 ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
* * *
23104032 TCAGTATGCTTGTAGGAGCT
1 ACAGTATGCTCGTAAGAGCT
23104052 TGATGGTATT
Statistics
Matches: 252, Mismatches: 52, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
31 27 0.11
32 209 0.83
33 16 0.06
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (32 bp):
ACAGTATGCTCGTAAGAGCTATCAATCTGTAA
Found at i:23103832 original size:64 final size:64
Alignment explanation
Indices: 23103713--23104051 Score: 387
Period size: 64 Copynumber: 5.3 Consensus size: 64
23103703 ATTCAGTATA
* * * * * *
23103713 CAGTAAGCTCGTATGAGCTAATTAATCA-GTAAACAATATACTCATAAGAGTTATCAATCTGTAA
1 CAGTATGCTCGTAAGAGCT-ATTAAT-ATGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAA
*
23103777 A
64 T
*
23103778 CAGTATGCTCGTAAGAGCTATTAATATGTAACCAATATGCTCGTAAGAGCTATCATTCTGTAAT
1 CAGTATGCTCGTAAGAGCTATTAATATGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAAT
* ** * * * * *
23103842 CAGTATGCTCATAAGAGCTAGCAATCTGTAACTAGTATACTCGTAAGAGCTATCAATCTGTAAC
1 CAGTATGCTCGTAAGAGCTATTAATATGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAAT
* * *
23103906 CAGTATGCTCGTAAGAGCTATTAATATGTAATCAGTATGCTCGTAAAAGCTATCAATCTGTAAT
1 CAGTATGCTCGTAAGAGCTATTAATATGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAAT
* * * * * *
23103970 CAGTATGCTCATAAGAGC-ATCAA-ACTATAACCAATATGCTAGTAAGAGCTATTAATATGTAAT
1 CAGTATGCTCGTAAGAGCTATTAATA-TGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAAT
* *
23104033 CAGTATGCTTGTAGGAGCT
1 CAGTATGCTCGTAAGAGCT
23104052 TGATGGTATT
Statistics
Matches: 233, Mismatches: 38, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
62 1 0.00
63 51 0.22
64 164 0.70
65 17 0.07
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (64 bp):
CAGTATGCTCGTAAGAGCTATTAATATGTAACCAATATGCTCGTAAGAGCTATCAATCTGTAAT
Found at i:23103867 original size:96 final size:96
Alignment explanation
Indices: 23103719--23104041 Score: 411
Period size: 96 Copynumber: 3.4 Consensus size: 96
23103709 TATACAGTAA
* * * * *
23103719 GCTCGTATGAGCTAATTAATCA-GTAAACAATATACTCATAAGAGTTATCAATCTGTAAACAGTA
1 GCTCGTAAGAGCT-ATTAAT-ATGTAATCAGTATGCTCATAAGAGCTATCAATCTGTAAACAGTA
*
23103783 TGCTCGTAAGAGCTATTAATATGTAACCAATAT
64 TGCTCGTAAGAGCTATCAATATGTAACCAATAT
* * * *
23103816 GCTCGTAAGAGCTATCATTCTGTAATCAGTATGCTCATAAGAGCTAGCAATCTGT-AACTAGTAT
1 GCTCGTAAGAGCTATTAATATGTAATCAGTATGCTCATAAGAGCTATCAATCTGTAAAC-AGTAT
* * *
23103880 ACTCGTAAGAGCTATCAATCTGTAACCAGTAT
65 GCTCGTAAGAGCTATCAATATGTAACCAATAT
* * *
23103912 GCTCGTAAGAGCTATTAATATGTAATCAGTATGCTCGTAAAAGCTATCAATCTGTAATCAGTATG
1 GCTCGTAAGAGCTATTAATATGTAATCAGTATGCTCATAAGAGCTATCAATCTGTAAACAGTATG
* *
23103977 CTCATAAGAGC-ATCAA-ACTATAACCAATAT
66 CTCGTAAGAGCTATCAATA-TGTAACCAATAT
*
23104007 GCTAGTAAGAGCTATTAATATGTAATCAGTATGCT
1 GCTCGTAAGAGCTATTAATATGTAATCAGTATGCT
23104042 TGTAGGAGCT
Statistics
Matches: 196, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
95 52 0.27
96 130 0.66
97 14 0.07
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (96 bp):
GCTCGTAAGAGCTATTAATATGTAATCAGTATGCTCATAAGAGCTATCAATCTGTAAACAGTATG
CTCGTAAGAGCTATCAATATGTAACCAATAT
Found at i:23115799 original size:32 final size:32
Alignment explanation
Indices: 23115763--23116042 Score: 373
Period size: 32 Copynumber: 8.8 Consensus size: 32
23115753 AACACCGATC
*
23115763 AGAGCTATCAATCTGTAATCAGTATGCTCATA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* * *
23115795 AGAGCTAGCAATCTGTAACCAATATGCTCGTA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* *
23115827 AGAGCTATCAATATGTAATAAGTATGCTCGTA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* *
23115859 AGAGCTATCAATCTGTAATCAGTATACACGTA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* * * * *
23115891 AGAGCTATTAAACTGTAACCAATATGCTAGTA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* *
23115923 AGAGCTATCAATATGTAATCAGTATGCTCATA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
*
23115955 GGAGCTATCAATCTGTAATCAGTATGCTCGTA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTA
* *
23115987 AGAGTTATCAATTTGTAA-CTAGTATGCTCGTA
1 AGAGCTATCAATCTGTAATC-AGTATGCTCGTA
*
23116019 AGAGCTATTAATCTGTAATCAGTA
1 AGAGCTATCAATCTGTAATCAGTA
23116043 CACTTTATGC
Statistics
Matches: 210, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
31 1 0.00
32 208 0.99
33 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (32 bp):
AGAGCTATCAATCTGTAATCAGTATGCTCGTA
Found at i:23115927 original size:96 final size:96
Alignment explanation
Indices: 23115763--23116042 Score: 416
Period size: 96 Copynumber: 2.9 Consensus size: 96
23115753 AACACCGATC
* *
23115763 AGAGCTATCAATCTGTAATCAGTATGCTCATAAGAGCTAGCAATCTGTAACCAATATGCTCGTAA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTAAGAGCTATCAATCTGTAACCAATATGCTCGTAA
* *
23115828 GAGCTATCAATATGTAATAAGTATGCTCGTA
66 GAGCTATCAATATGTAATCAGTATGCTCATA
* * * * *
23115859 AGAGCTATCAATCTGTAATCAGTATACACGTAAGAGCTATTAAACTGTAACCAATATGCTAGTAA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTAAGAGCTATCAATCTGTAACCAATATGCTCGTAA
23115924 GAGCTATCAATATGTAATCAGTATGCTCATA
66 GAGCTATCAATATGTAATCAGTATGCTCATA
* * * * *
23115955 GGAGCTATCAATCTGTAATCAGTATGCTCGTAAGAGTTATCAATTTGTAACTAGTATGCTCGTAA
1 AGAGCTATCAATCTGTAATCAGTATGCTCGTAAGAGCTATCAATCTGTAACCAATATGCTCGTAA
* *
23116020 GAGCTATTAATCTGTAATCAGTA
66 GAGCTATCAATATGTAATCAGTA
23116043 CACTTTATGC
Statistics
Matches: 163, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 163 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (96 bp):
AGAGCTATCAATCTGTAATCAGTATGCTCGTAAGAGCTATCAATCTGTAACCAATATGCTCGTAA
GAGCTATCAATATGTAATCAGTATGCTCATA
Found at i:23124724 original size:14 final size:14
Alignment explanation
Indices: 23124698--23124772 Score: 89
Period size: 14 Copynumber: 5.3 Consensus size: 14
23124688 AAACTCAAAA
23124698 CTTACAACCCTAAAC
1 CTTA-AACCCTAAAC
*
23124713 CTTAAACTCTAAATC
1 CTTAAACCCTAAA-C
*
23124728 TTTAAACCCTAAA-
1 CTTAAACCCTAAAC
23124741 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
* *
23124755 TTTAAATCCTAAAC
1 CTTAAACCCTAAAC
23124769 CTTA
1 CTTA
23124773 GGGTTCAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
13 12 0.24
14 23 0.45
15 16 0.31
ACGTcount: A:0.41, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:23124772 original size:28 final size:29
Alignment explanation
Indices: 23124703--23124772 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
23124693 CAAAACTTAC
*
23124703 AACCCTAAACCTTAAACTCTAAATCTTTA
1 AACCCTAAACCTTAAACCCTAAATCTTTA
23124732 AACCCTAAA-CTTAAACCCTAAA-CTTTA
1 AACCCTAAACCTTAAACCCTAAATCTTTA
*
23124759 AATCCTAAACCTTA
1 AACCCTAAACCTTA
23124773 GGGTTCAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 13 0.34
28 16 0.42
29 9 0.24
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (29 bp):
AACCCTAAACCTTAAACCCTAAATCTTTA
Found at i:23125243 original size:33 final size:32
Alignment explanation
Indices: 23125184--23125251 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
23125174 AAATAAATAC
** *
23125184 ATTAATATTTCAAAATTTATATAATATAAATT
1 ATTAATACATCAAAATTTATATAATATAAAAT
23125216 ATTAATACATCAAAATTTATGCA-AATATAAAAT
1 ATTAATACATCAAAATTTAT--ATAATATAAAAT
23125249 ATT
1 ATT
23125252 TTATCACATG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 18 0.58
33 12 0.39
34 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (32 bp):
ATTAATACATCAAAATTTATATAATATAAAAT
Found at i:23136309 original size:23 final size:22
Alignment explanation
Indices: 23136283--23136356 Score: 94
Period size: 23 Copynumber: 3.3 Consensus size: 22
23136273 AACAGCACTG
* *
23136283 AAAACAGTACTAAAATAGAACTA
1 AAAACAGTACCAAAAT-GAACCA
*
23136306 AAAACAGTACCAAAATGCACCA
1 AAAACAGTACCAAAATGAACCA
*
23136328 AAAACAGTACCAAAACTGCACCA
1 AAAACAGTACCAAAA-TGAACCA
23136351 AAAACA
1 AAAACA
23136357 ACATCAAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
22 19 0.40
23 28 0.60
ACGTcount: A:0.58, C:0.23, G:0.08, T:0.11
Consensus pattern (22 bp):
AAAACAGTACCAAAATGAACCA
Found at i:23136320 original size:12 final size:12
Alignment explanation
Indices: 23136268--23136402 Score: 66
Period size: 12 Copynumber: 11.8 Consensus size: 12
23136258 ACCAAAACAT
23136268 CCAAAAACAGCA
1 CCAAAAACAGCA
** *
23136280 CTGAAAACAGTA
1 CCAAAAACAGCA
* * *
23136292 -CTAAAATAGAA
1 CCAAAAACAGCA
* *
23136303 CTAAAAACAGTA
1 CCAAAAACAGCA
*
23136315 CC-AAAA-TGCA
1 CCAAAAACAGCA
*
23136325 CCAAAAACAGTA
1 CCAAAAACAGCA
*
23136337 CC-AAAACTGCA
1 CCAAAAACAGCA
*
23136348 CCAAAAACAACA
1 CCAAAAACAGCA
* *
23136360 TC-AAATCAGCA
1 CCAAAAACAGCA
**
23136371 CCAAAAACAATA
1 CCAAAAACAGCA
* *
23136383 CC-AAATCTGCA
1 CCAAAAACAGCA
23136394 CCAAAAACA
1 CCAAAAACA
23136403 ACCTGCAAAA
Statistics
Matches: 84, Mismatches: 33, Indels: 12
0.65 0.26 0.09
Matches are distributed among these distances:
10 4 0.05
11 39 0.46
12 41 0.49
ACGTcount: A:0.56, C:0.27, G:0.07, T:0.10
Consensus pattern (12 bp):
CCAAAAACAGCA
Found at i:23136364 original size:23 final size:23
Alignment explanation
Indices: 23136305--23136404 Score: 112
Period size: 23 Copynumber: 4.4 Consensus size: 23
23136295 AAATAGAACT
**
23136305 AAAAACAGTACCAAAA-TGCACC
1 AAAAACAACACCAAAACTGCACC
**
23136327 AAAAACAGTACCAAAACTGCACC
1 AAAAACAACACCAAAACTGCACC
* * *
23136350 AAAAACAACATCAAATCAGCACC
1 AAAAACAACACCAAAACTGCACC
* *
23136373 AAAAACAATACCAAATCTGCACC
1 AAAAACAACACCAAAACTGCACC
23136396 AAAAACAAC
1 AAAAACAAC
23136405 CTGCAAAATG
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
22 16 0.24
23 52 0.76
ACGTcount: A:0.56, C:0.29, G:0.06, T:0.09
Consensus pattern (23 bp):
AAAAACAACACCAAAACTGCACC
Found at i:23136573 original size:18 final size:18
Alignment explanation
Indices: 23136544--23136587 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
23136534 TCGAAAAAGT
* *
23136544 ATCATCCTCATCATCCTC
1 ATCATTCTCATCATCATC
* *
23136562 ATCGTTCTCATCGTCATC
1 ATCATTCTCATCATCATC
23136580 ATCATTCT
1 ATCATTCT
23136588 TGCAATAAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.36, G:0.05, T:0.39
Consensus pattern (18 bp):
ATCATTCTCATCATCATC
Found at i:23141154 original size:20 final size:21
Alignment explanation
Indices: 23141112--23141156 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
23141102 AGTGATTTTC
* *
23141112 TTTAAAAAAAAAGTTTAGATT
1 TTTAAAAAAAAAATCTAGATT
*
23141133 TTTAAAAAAAAAATCT-GTTT
1 TTTAAAAAAAAAATCTAGATT
23141153 TTTA
1 TTTA
23141157 GTTATTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (21 bp):
TTTAAAAAAAAAATCTAGATT
Found at i:23141288 original size:21 final size:21
Alignment explanation
Indices: 23141259--23141301 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
23141249 TTTTCTTTAA
23141259 AAAAGATAAAATTTATATTTTT
1 AAAAGATAAAATTTAT-TTTTT
23141281 AAAA-ATAAAATTTATTTTTT
1 AAAAGATAAAATTTATTTTTT
23141301 A
1 A
23141302 GTTATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.29
21 11 0.52
22 4 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AAAAGATAAAATTTATTTTTT
Found at i:23141358 original size:50 final size:50
Alignment explanation
Indices: 23141295--23141525 Score: 149
Period size: 50 Copynumber: 4.7 Consensus size: 50
23141285 ATAAAATTTA
** * **
23141295 TTTTTTAGTTATTTTAAAGAAAAGTTTAAATTTTTAACAAAGTTTTGATT
1 TTTTTTAACTATTTTAAAGAAAAGTTTAAATTTTTAATAAAGTAATGATT
* * * * *
23141345 TTTTTTAACTATTTCAAAATAAAAGTTTAGATTTTTAGGTAAAATAATGATT
1 TTTTTTAACTATTT-TAAAGAAAAGTTTAAATTTTTA-ATAAAGTAATGATT
* * * **
23141397 TTCTTT-A-TA----AAAAAAAAGTTTATATTTTTAA-AAA-TAAAAATCT
1 TTTTTTAACTATTTTAAAGAAAAGTTTAAATTTTTAATAAAGTAATGAT-T
* * **
23141440 ATTTTTAATTATTTTAAAGAAAAAGTTTAAATTTTTAATAAAGTTTTGA--
1 TTTTTTAACTATTTTAAAG-AAAAGTTTAAATTTTTAATAAAGTAATGATT
* * *
23141489 TTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTTA
1 TTTTTTAACTATTT-TAAAGAAAAGTTTAAATTTTTA
23141526 GGTAAAAAAT
Statistics
Matches: 139, Mismatches: 29, Indels: 27
0.71 0.15 0.14
Matches are distributed among these distances:
42 5 0.04
43 8 0.06
44 1 0.01
45 21 0.15
49 31 0.22
50 34 0.24
51 23 0.17
52 16 0.12
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (50 bp):
TTTTTTAACTATTTTAAAGAAAAGTTTAAATTTTTAATAAAGTAATGATT
Found at i:23141402 original size:146 final size:145
Alignment explanation
Indices: 23141051--23141628 Score: 800
Period size: 145 Copynumber: 4.0 Consensus size: 145
23141041 ATGTTTTGGT
* * * *
23141051 TTTTTTTTAAAATAATTTCGAAATAAAAGCTTTCA-TTTTTCTAAGTAAAATAGTGATTTTCTTT
1 TTTTTTTT-AACT-ATTTCGAAATAAAAG-TTT-AGATTTT-TAGGTAAAATAATGATTTTCTTT
* * *
23141115 AAAAAAAAAGTTTAGATTTTTAAAAA-AAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTTTA
61 AAAAAAAAAATTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAAGTTTA
*
23141179 AA-TTTTAACAAAG-TTTAA
126 AATTTTTAACAAAGTTTTGA
*
23141197 ATTTTTTTAACTATTTCGAAATAAAAGTTT-GAATTTTTAGGTAAAATAATGATTTTCTTTAAAA
1 TTTTTTTTAACTATTTCGAAATAAAAGTTTAG-ATTTTTAGGTAAAATAATGATTTTCTTT-AAA
*
23141261 AAGATAAAATTTATATTTTTAAAAAT-AAAATTTATTTTTTAGTTATTTTAAAG-AAAAGTTTAA
64 AA-A-AAAATTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAAGTTTAA
23141324 ATTTTTAACAAAGTTTTGA
127 ATTTTTAACAAAGTTTTGA
*
23141343 TTTTTTTTAACTATTTCAAAATAAAAGTTTAGATTTTTAGGTAAAATAATGATTTTCTTTATAAA
1 TTTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTTAGGTAAAATAATGATTTTCTTTA-AAA
*
23141408 AAAAAAGTTTATATTTTTAAAAATAAAAATCTA-TTTTTAATTATTTTAAAGAAAAAGTTTAAAT
65 AAAAAA-TTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAAGTTTAAAT
*
23141472 TTTTAATAAAGTTTTGA
129 TTTTAACAAAGTTTTGA
*
23141489 --TTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTTAGGTAAAA-AATTATTTTCTTTAAAAA
1 TTTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTTAGGTAAAATAATGATTTTCTTTAAAAA
* * *
23141551 GAGAAAATTTATATATTTAAAAATAAAAATCTGTTTTTTTAGTTATTTTAAAGAAAAAATTTAAA
66 -A-AAAATTTATATTTTTAAAAATAAAAATCT-ATTTTTTAGTTATTTTAAAGAAAAAGTTTAAA
23141616 TTTTTAACAAAGT
128 TTTTTAACAAAGT
23141629 CCAAAATTTC
Statistics
Matches: 393, Mismatches: 22, Indels: 35
0.87 0.05 0.08
Matches are distributed among these distances:
142 25 0.06
143 50 0.13
144 78 0.20
145 133 0.34
146 106 0.27
147 1 0.00
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.45
Consensus pattern (145 bp):
TTTTTTTTAACTATTTCGAAATAAAAGTTTAGATTTTTAGGTAAAATAATGATTTTCTTTAAAAA
AAAAATTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTT
TTAACAAAGTTTTGA
Found at i:23142718 original size:241 final size:239
Alignment explanation
Indices: 23142297--23142771 Score: 785
Period size: 241 Copynumber: 2.0 Consensus size: 239
23142287 AAAATCATAA
23142297 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
1 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
* * * * *
23142362 TTAGGCTTTTTTTTAGGATTCTAAAATAGTATTAATTTTAAGAATTGAAGGTATTTTACTAGAAT
66 TTAGGCATCTATTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGTATTTTACTAGAAT
*
23142427 TATTTAGGTATCCTTTAGGGTTCTTATTAAGAGTAAAAATCTCTAATTTAAGTTTTAAATTAGAT
131 TATTTAGGTATCCTTTAGAGTTCTTATTAAGAGTAAAAATCTCTAATTTAAGTTTTAAATTAGAT
* * *
23142492 AAGTTTGGTGAACACGTTTTAG-CTAAGTTACAAGTAAATCGGAG
196 AAGTTTGATGAACACGTCTTAGTC-AAATTACAAGTAAATCGGAG
23142536 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAAATT
1 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGT-AA--
23142601 TTTTTTA-G-ATCTATTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGTATTTTACTA
63 -TTTTTAGGCATCTATTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGTATTTTACTA
* *
23142664 GAATTATTTAGGTATCCTTTAGAGTTCTTATTAGGAGTAAAAATCTTTAATTTAAGTTTTAAATT
127 GAATTATTTAGGTATCCTTTAGAGTTCTTATTAAGAGTAAAAATCTCTAATTTAAGTTTTAAATT
23142729 AGATAAGTTTGATGAACACGTCTTAGTCAAATTACAAGTAAAT
192 AGATAAGTTTGATGAACACGTCTTAGTCAAATTACAAGTAAAT
23142772 TTGAGGCATT
Statistics
Matches: 220, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
239 60 0.27
240 2 0.01
241 150 0.68
242 2 0.01
243 6 0.03
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.42
Consensus pattern (239 bp):
TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
TTAGGCATCTATTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAGTATTTTACTAGAAT
TATTTAGGTATCCTTTAGAGTTCTTATTAAGAGTAAAAATCTCTAATTTAAGTTTTAAATTAGAT
AAGTTTGATGAACACGTCTTAGTCAAATTACAAGTAAATCGGAG
Found at i:23146077 original size:4 final size:4
Alignment explanation
Indices: 23146068--23146109 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
23146058 GTGCCCTTAT
* *
23146068 TTCA TTCA TTCA TTCA CTCA TTCA TTCA TCCA TTCA TTCA TT
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TT
23146110 TGTTTATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.48
Consensus pattern (4 bp):
TTCA
Found at i:23154104 original size:15 final size:15
Alignment explanation
Indices: 23154081--23154112 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23154071 AGAGATTTCT
*
23154081 AAAAGAAAAAAGAAA
1 AAAAAAAAAAAGAAA
23154096 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
23154111 AA
1 AA
23154113 GAGTACGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:23154386 original size:17 final size:16
Alignment explanation
Indices: 23154366--23154414 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
23154356 AAATACAAAG
23154366 AAAAAGAAAAGAGAAGA
1 AAAAAGAAAAGAGAA-A
*
23154383 AAAAAGAAAAAAGAAA
1 AAAAAGAAAAGAGAAA
23154399 AAAATAGAAAGAGAGA
1 AAAA-AGAAA-AGAGA
23154415 GCAAGATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 19 0.68
18 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAGAGAAA
Found at i:23154868 original size:42 final size:42
Alignment explanation
Indices: 23154809--23155992 Score: 1453
Period size: 42 Copynumber: 28.4 Consensus size: 42
23154799 AAAGAAAGCA
* *
23154809 TTCATTGCATTTAGAGGCCTAGGTGTAGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23154851 TTCATTGCATTCAGAGGCCTAGGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * ** *
23154893 TTCATCGCATTTAGAGGCTTAGGTGGGGAGGTTTATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
23154935 TTCATCGCATTTAAAGGCCCAGGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * * *
23154977 TTCATTGCATTTAGAGGCCCAAGTGTGGAGCTCTATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
23155019 TTCATTGCATTCAGAGGCCAAGGTGTGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
23155061 TTCATTGCATTTAGAGGCCTAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155103 TTCATTGCATTCAGAGGCTTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155145 TTCATTGCATTCAGAGGCCAAGGTGTGGAGG-CCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCC-ATTTACTT
* *
23155187 TTCATCGCATTTAGAGG-CTCAGGTGTGGAGGTCCATTTAGTT
1 TTCATTGCATTTAGAGGCCT-AGGTGTGGAGGTCCATTTACTT
* *
23155229 TTCATTGCATTTAGAGGCCCAGGTGTGGAGG-CTTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTC-CATTTACTT
* * *
23155271 TTCATTGCATTCAGAGACCTAGGTGTGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155313 TTCATTGCATTTAGAGGCCCAGGTGTGGAAGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
23155355 TTCATCGCATTTACAGGCCCAGGTGTGGAAGTCCATTTAC-T
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155396 TTCATCGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
23155438 TTCATTGCATTTACAGGCCCAGGTGTGGAGGCCCATTTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCA-TTTACTT
* *
23155481 TTCATTGCATTCAGAGG-CTCAAGTGTGGAGGTCCATTTA-TT
1 TTCATTGCATTTAGAGGCCT-AGGTGTGGAGGTCCATTTACTT
* *
23155522 TTCATTACATTTAGAGGCCTAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
23155564 TTCATTGCATTCAGAGGCCTAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
23155606 TTCATCGCATTT--A-G---AGGT-TGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155641 TTCATCGCATTTAGAGGCCCAGGTGTGGAGG-CCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCC-ATTTACTT
* * *
23155683 TTCATTGCATTCAAAGGCCTAGGTGTGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
23155725 TTCATTGCATTCAGAGGCCCAGGTTTGGAGGTCCTTTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * * *
23155767 TTCATCGCATTTAGTGGCCCAAGTCTGGAGGTCCATTTAC-T
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * * * *
23155808 TTCATCGCATTTAGAGGCCCAAGTGTGCAGGTGCATTTAATT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* ** *
23155850 TTCATTGCATTTAGAGGCCTAGGTGTGAAGACCCATTCACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
23155892 TTCATTGCATTTAGAAGCCCAGGTGTGGATGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23155934 TTCATTGCATTCAGAGGCCTAGGTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
23155976 TTCATTGCAATTAGAGG
1 TTCATTGCATTTAGAGG
23155993 TCTAAGCATA
Statistics
Matches: 991, Mismatches: 130, Indels: 42
0.85 0.11 0.04
Matches are distributed among these distances:
35 28 0.03
36 3 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 1 0.00
41 119 0.12
42 796 0.80
43 41 0.04
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:23155635 original size:35 final size:35
Alignment explanation
Indices: 23155589--23155657 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
23155579 GGCCTAAGTG
23155589 TGGAGGCCCATTTACTTTTCATCGCATTTAGAGGT
1 TGGAGGCCCATTTACTTTTCATCGCATTTAGAGGT
*
23155624 TGGAGGTCCATTTACTTTTCATCGCATTTAGAGG
1 TGGAGGCCCATTTACTTTTCATCGCATTTAGAGG
23155658 CCCAGGTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (35 bp):
TGGAGGCCCATTTACTTTTCATCGCATTTAGAGGT
Found at i:23156206 original size:20 final size:21
Alignment explanation
Indices: 23156181--23156220 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23156171 TTAATAAGTT
*
23156181 ATTTATAC-TTATTTATTTGC
1 ATTTATACTTTATATATTTGC
*
23156201 ATTTATCCTTTATATATTTG
1 ATTTATACTTTATATATTTG
23156221 ATGTTAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.25, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
ATTTATACTTTATATATTTGC
Found at i:23157158 original size:241 final size:238
Alignment explanation
Indices: 23156737--23157216 Score: 757
Period size: 241 Copynumber: 2.0 Consensus size: 238
23156727 AAAACTATAA
23156737 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTT
1 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTT
* **
23156802 TTAGGCTTTTTTTTAAGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAAT
66 TTAGGC-ATTTTTTAAGATTCTAAAATAGAATTAATTTTAAGAATTGAAAATATTTTACTAGAAT
* *
23156867 TATTTAGGTATCCTTTAGTGTTCTTATTAAGAGTAAAAATTTCTAATTTAAGTTTTAAATTAGAT
130 TATCTAGGTATCCTTTAGGGTTCTTATTAAGAGTAAAAATTTCTAATTTAAGTTTTAAATTAGAT
* * * *
23156932 AAGTTTGGTGAACAGGTTTTAGTTAAGTTACAAGTAAATCGGAG
195 AAATTTGGTGAACAGGTATTAGTCAAATTACAAGTAAATCGGAG
*
23156976 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTTATTAGTAAATT
1 TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGT-AA--
* *
23157041 TTTTTTAGG-ATTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAAATATTTTACTAG
63 -CTTTTAGGCATTTTTTAAGATTCTAAAATAGAATTAATTTTAAGAATTGAAAATATTTTACTAG
*
23157105 AATTATCTAGGTATCCTTTAGGGTTCTTATTAGGAGTAAAAATCTT-TAATTTAAGTTTTAAATT
127 AATTATCTAGGTATCCTTTAGGGTTCTTATTAAGAGTAAAAAT-TTCTAATTTAAGTTTTAAATT
* *
23157169 AGATAAATTTGGTGAACATGTATTAGTCAAATTACAAGTAAATTGGAG
191 AGATAAATTTGGTGAACAGGTATTAGTCAAATTACAAGTAAATCGGAG
23157217 GTATTTTTTA
Statistics
Matches: 221, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
239 59 0.27
240 2 0.01
241 151 0.68
242 2 0.01
243 7 0.03
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (238 bp):
TAATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTT
TTAGGCATTTTTTAAGATTCTAAAATAGAATTAATTTTAAGAATTGAAAATATTTTACTAGAATT
ATCTAGGTATCCTTTAGGGTTCTTATTAAGAGTAAAAATTTCTAATTTAAGTTTTAAATTAGATA
AATTTGGTGAACAGGTATTAGTCAAATTACAAGTAAATCGGAG
Found at i:23157792 original size:12 final size:12
Alignment explanation
Indices: 23157770--23157837 Score: 53
Period size: 12 Copynumber: 6.2 Consensus size: 12
23157760 GTTAACTTTA
23157770 AATAT-TTATAT
1 AATATATTATAT
23157781 AATATATTATAT
1 AATATATTATAT
*
23157793 AATATACTTGT-T
1 AATATA-TTATAT
*
23157805 -A-A-CTT-TA-
1 AATATATTATAT
23157812 AATAT-TTATAT
1 AATATATTATAT
23157823 AATATATTATAT
1 AATATATTATAT
23157835 AAT
1 AAT
23157838 GGTTCTCATC
Statistics
Matches: 46, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
7 1 0.02
8 3 0.07
9 3 0.07
10 3 0.07
11 11 0.24
12 22 0.48
13 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (12 bp):
AATATATTATAT
Found at i:23157815 original size:42 final size:42
Alignment explanation
Indices: 23157756--23157837 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
23157746 TCATACGTTA
23157756 ACTTGTTAACTTTAAATATTTATATAATATATTATATAATAT
1 ACTTGTTAACTTTAAATATTTATATAATATATTATATAATAT
23157798 ACTTGTTAACTTTAAATATTTATATAATATATTATATAAT
1 ACTTGTTAACTTTAAATATTTATATAATATATTATATAAT
23157838 GGTTCTCATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (42 bp):
ACTTGTTAACTTTAAATATTTATATAATATATTATATAATAT
Found at i:23160742 original size:69 final size:67
Alignment explanation
Indices: 23160661--23160860 Score: 202
Period size: 62 Copynumber: 3.0 Consensus size: 67
23160651 TATTTTAATA
* * *
23160661 ATTTAATATTAAATTAGATTTAATACTTATCTTAATAAGTATTTTATTAATTTAATATTAAAGTG
1 ATTTAATATTAAATTA-ATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTG
23160726 ATT
65 ATT
* * * *
23160729 ATCTTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAACATTCTATT-ATTT--TAAT-A
1 AT-TTAATATTAAATT-AATTTAATATTTATC-T-TA-ATAAATATTATATTAATTTAATATTAA
23160790 A--G---
61 AGTGATT
*
23160792 ATTTAATATTAAATATAATTTAATATTTATCTTGATAAATATTATATTAATTTAATATTAAAGTG
1 ATTTAATATTAAAT-TAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTG
23160857 ATT
65 ATT
23160860 A
1 A
23160861 AAGTTAATCA
Statistics
Matches: 106, Mismatches: 11, Indels: 30
0.72 0.07 0.20
Matches are distributed among these distances:
59 12 0.11
60 5 0.05
61 1 0.01
62 29 0.27
63 5 0.05
65 1 0.01
66 1 0.01
68 5 0.05
69 28 0.26
70 2 0.02
71 6 0.06
72 11 0.10
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (67 bp):
ATTTAATATTAAATTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGA
TT
Found at i:23162028 original size:20 final size:20
Alignment explanation
Indices: 23161987--23162024 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23161977 TCTCATTTTA
**
23161987 TACTATCGGTACTACTAGAG
1 TACTATCGACACTACTAGAG
23162007 TACTATCGACACT-CTAGA
1 TACTATCGACACTACTAGA
23162025 AGTAACTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (20 bp):
TACTATCGACACTACTAGAG
Found at i:23173605 original size:23 final size:23
Alignment explanation
Indices: 23173551--23173678 Score: 166
Period size: 23 Copynumber: 5.5 Consensus size: 23
23173541 AGAACTTCTT
* * *
23173551 TACGTTTACGCTTGTTAGCATAA
1 TACGTTTACGCTCGTCAGCATGA
23173574 GTACGTTTACGCTCGTCAGCATGA
1 -TACGTTTACGCTCGTCAGCATGA
* * *
23173598 TACGTTTACACTCATCAGCAAGA
1 TACGTTTACGCTCGTCAGCATGA
23173621 TACGTTTACGCTCGTCAGCATGA
1 TACGTTTACGCTCGTCAGCATGA
* *
23173644 TACATTTACGCTCTTCAGCATGA
1 TACGTTTACGCTCGTCAGCATGA
*
23173667 TATGTTTACGCT
1 TACGTTTACGCT
23173679 TATTTCATTT
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
23 71 0.78
24 20 0.22
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
TACGTTTACGCTCGTCAGCATGA
Found at i:23176508 original size:16 final size:16
Alignment explanation
Indices: 23176487--23176517 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23176477 ATACTATTTT
*
23176487 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
23176503 TATTTAATATTAAAA
1 TATTTAATATTAAAA
23176518 TGATAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:23186304 original size:19 final size:20
Alignment explanation
Indices: 23186257--23186304 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
23186247 TTGATAATTC
23186257 TTAA-TATTA-AATTATAAA
1 TTAATTATTATAATTATAAA
*
23186275 TTAAATT-TTATAATT-TATA
1 TT-AATTATTATAATTATAAA
23186294 TTAATTATTAT
1 TTAATTATTAT
23186305 GAAGAGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.24
19 14 0.56
20 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTATTATAATTATAAA
Found at i:23186342 original size:3 final size:3
Alignment explanation
Indices: 23186334--23186368 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
23186324 TTGTTTTTAA
23186334 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
23186369 ATTTAAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23195020 original size:21 final size:21
Alignment explanation
Indices: 23194988--23195047 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
23194978 AACTGTGCAG
* **
23194988 ATTTCTATCGATACATTTACTA
1 ATTTCTACCGATACAAGTA-TA
23195010 A-TTCTACCGATACAAGTATA
1 ATTTCTACCGATACAAGTATA
23195030 ATTTCTACCGATACAAGT
1 ATTTCTACCGATACAAGT
23195048 CATGCAACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.09
21 30 0.88
22 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (21 bp):
ATTTCTACCGATACAAGTATA
Found at i:23195689 original size:53 final size:52
Alignment explanation
Indices: 23195632--23195845 Score: 149
Period size: 51 Copynumber: 4.2 Consensus size: 52
23195622 GATTACATAT
*
23195632 AGTCATCGGACCCCTT-GTTCCGT-ATAGAATTTCATATACCCACGATGACACTG
1 AGTCATCGGACCCCTTAATT-CGTCAT-GAA-TTCATATACCCACGATGACACTG
* * * * *
23195685 AGTCATCGGA-CCTTTAATTCGTCATGGATTCATTTACTCACGATGACACTT
1 AGTCATCGGACCCCTTAATTCGTCATGAATTCATATACCCACGATGACACTG
* * * * * * * * *
23195736 AGTCATCGGA-CCTTTAATCCGTAAAGGATTCATTTACTCACAATGACACTT
1 AGTCATCGGACCCCTTAATTCGTCATGAATTCATATACCCACGATGACACTG
* * * * * *
23195787 AGTGATCAGA-CCTTTAA-TC--CATG-ATTCATTTACTCACGATGACACTT
1 AGTCATCGGACCCCTTAATTCGTCATGAATTCATATACCCACGATGACACTG
23195834 AGTCATCGGACC
1 AGTCATCGGACC
23195846 TTTTCGTTTA
Statistics
Matches: 140, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
47 31 0.22
48 3 0.02
50 1 0.01
51 82 0.59
52 9 0.06
53 14 0.10
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (52 bp):
AGTCATCGGACCCCTTAATTCGTCATGAATTCATATACCCACGATGACACTG
Found at i:23195730 original size:51 final size:51
Alignment explanation
Indices: 23195662--23195848 Score: 265
Period size: 51 Copynumber: 3.7 Consensus size: 51
23195652 CGTATAGAAT
* * *
23195662 TTCATATACCCACGATGACACTGAGTCATCGGACCTTTAATTCGTCATGGA
1 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATTCGTCATGGA
* * *
23195713 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGA
1 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATTCGTCATGGA
* * *
23195764 TTCATTTACTCACAATGACACTTAGTGATCAGACCTTTAA-TC--CAT-GA
1 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATTCGTCATGGA
23195811 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTT
1 TTCATTTACTCACGATGACACTTAGTCATCGGACCTTT
23195849 TCGTTTATAG
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 37 0.31
48 1 0.01
50 1 0.01
51 82 0.68
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
TTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATTCGTCATGGA
Found at i:23195831 original size:98 final size:102
Alignment explanation
Indices: 23195615--23195848 Score: 298
Period size: 98 Copynumber: 2.3 Consensus size: 102
23195605 TTTCATTTAA
* * ** * *
23195615 TACTCACGATTACA-TATAGTCATCGGACCCCTTGTTCCGTATAGAATTTCATATACCCACGATG
1 TACTCACGATGACACT-TAGTCATCGGA-CCTTTAATCCGTAAAGAATTTCATATACCCACAATG
*
23195679 ACACTGAGTCATCGGACCTTTAATTCGTCATGGATTCATT
64 ACACTGAGTCATCAGACCTTTAATTCG-CATGGATTCATT
* * *
23195719 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGA-TTCATTTACTCACAATGAC
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGAATTTCATATACCCACAATGAC
* *
23195783 ACTTAGTGATCAGACCTTTAA-TC-CAT-GATTCATT
66 ACTGAGTCATCAGACCTTTAATTCGCATGGATTCATT
23195817 TACTCACGATGACACTTAGTCATCGGACCTTT
1 TACTCACGATGACACTTAGTCATCGGACCTTT
23195849 TCGTTTATAG
Statistics
Matches: 117, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
98 40 0.34
99 3 0.03
101 2 0.02
102 34 0.29
103 13 0.11
104 24 0.21
105 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (102 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGAATTTCATATACCCACAATGAC
ACTGAGTCATCAGACCTTTAATTCGCATGGATTCATT
Found at i:23200713 original size:41 final size:41
Alignment explanation
Indices: 23200655--23200734 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
23200645 CCTTGATTCC
* * *
23200655 CAAAACAGTATGCACACACGATCTAGCACACGCCCGTGTCA
1 CAAAACAATATGCACACACGATCCAGCACACGACCGTGTCA
*
23200696 CAAAACAATATGTACACACGATCCAGCACACGACCGTGT
1 CAAAACAATATGCACACACGATCCAGCACACGACCGTGT
23200735 GTCCAGCCCG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.36, C:0.33, G:0.16, T:0.15
Consensus pattern (41 bp):
CAAAACAATATGCACACACGATCCAGCACACGACCGTGTCA
Found at i:23202446 original size:293 final size:292
Alignment explanation
Indices: 23201857--23202726 Score: 772
Period size: 293 Copynumber: 3.0 Consensus size: 292
23201847 ATATCTATAA
* * *
23201857 TATAC-TATTTAT-TAAGTGTTTTACTGAGTTGGTGTCACCCTCAATC-GAATTACCAACTCAAT
1 TATACTTA-TTATCTAAGTGTTTTACTGAGTTGGTGTCACCCTCAACCAG-ATCACCAACTTAAT
* * * * * *
23201919 TAG-AAAATTACAAAAATGCCCTTTTAG-AATTAAAATAAGTTATACTATTTGAGGGC-AGTTTA
64 T-GTTAAATTACGAAAATGACCTTTT-GTAATTAAAATAAGTTATAATATTCGA-GGCTA-CTTA
* * * * * ** *
23201981 ATCTTTTCATTTTAACAAAAATCAATTAAA-ATATATATATGGTGGGATTTAAACCCCCACTAAT
125 ATCTTTTTAATTTAA-AAAAACCAA-TAAATATACATATA-GATGGGA-TTAAACCCGAACCAAT
** ** * * ****
23202045 TGGGTTAATAAAA-CTTTAAATTTACCACTCA-ATCAAAG-TTTCATTTTGATGCACTT-TAC-T
186 TGCATTTGTAAAACCTTT-AATTTACCACTTAGCT-AAAGCTTT-ATTTTGATATTTTTGTACAT
** * * ** * ** * **
23202105 TTTTA-TTTTAATATGCAGAAGTTATTATCTCCATTAGTTGTATATC
248 TTCAATTTTTATTATGCACACTTTATTACCTTAATAAACTG--TATC
* * *
23202151 TATAC-TA-TATCTAAGTGTTTTACT-AGGTTGGTGTCACCCTCTATCAGATCACCAA-TTCAGT
1 TATACTTATTATCTAAGTGTTTTACTGA-GTTGGTGTCACCCTCAACCAGATCACCAACTT-AAT
* * * * * *
23202212 TGTTAAATTACGGAAAT-ACCTTTTTGTAATTAAAATGAGTTATATTATTCGAGGGTACTTTATT
64 TGTTAAATTACGAAAATGACC-TTTTGTAATTAAAATAAGTTATAATATTCGAGGCTACTTAATC
* * ** * * *
23202276 TTTTTCCATTTAAGAAAATTAATAAAAATATGCATGTA-ATGGGATTTAAACCCGAACCAATTGT
128 TTTTT-AATTTAAAAAAACCAAT--AAATATACATATAGATGGGA-TTAAACCCGAACCAATTGC
*
23202340 ATTTGTAAAACCTTTAATTTACCA-TTCAGCTAAAGTTTTATTTTGATATTTTTGTACATTTCAA
189 ATTTGTAAAACCTTTAATTTACCACTT-AGCTAAAGCTTTATTTTGATATTTTTGTACATTTCAA
23202404 TTTTTATTATGCACACTTTATTACCTTAATAAACTGTATC
253 TTTTTATTATGCACACTTTATTACCTTAATAAACTGTATC
* * * **
23202444 TATACTTATTATTTAAGTGTTTTCCTGAGTTGGTGTCACCCTCAACCAGGTCATTAACTTAATTG
1 TATACTTATTATCTAAGTGTTTTACTGAGTTGGTGTCACCCTCAACCAGATCACCAACTTAATTG
* *
23202509 TTAAATTATGAAAATGTCCTTTTGTAATTAAAATAAGTTATAATATTCGAGGCTACTTAATCTTT
66 TTAAATTACGAAAATGACCTTTTGTAATTAAAATAAGTTATAATATTCGAGGCTACTTAATCTTT
* *
23202574 TTAATTTAAAAAAACCAATAAATATACATATATGGTGGGATTCAACCCGAACCAATTGCATTTGT
131 TTAATTTAAAAAAACCAATAAATATACATATA-GATGGGATTAAACCCGAACCAATTGCATTTGT
* *
23202639 GAAACCTTTTATTTACCACTTAGCTAAAGCTTTATTTTGATATTTTTGTACATTTCAATTTTTAT
195 AAAACCTTTAATTTACCACTTAGCTAAAGCTTTATTTTGATATTTTTGTACATTTCAATTTTTAT
*
23202704 TATGCATACTTTATTACCTTAAT
260 TATGCACACTTTATTACCTTAAT
23202727 TATATATATA
Statistics
Matches: 471, Mismatches: 78, Indels: 55
0.78 0.13 0.09
Matches are distributed among these distances:
291 2 0.00
292 89 0.19
293 211 0.45
294 40 0.08
295 124 0.26
296 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.41
Consensus pattern (292 bp):
TATACTTATTATCTAAGTGTTTTACTGAGTTGGTGTCACCCTCAACCAGATCACCAACTTAATTG
TTAAATTACGAAAATGACCTTTTGTAATTAAAATAAGTTATAATATTCGAGGCTACTTAATCTTT
TTAATTTAAAAAAACCAATAAATATACATATAGATGGGATTAAACCCGAACCAATTGCATTTGTA
AAACCTTTAATTTACCACTTAGCTAAAGCTTTATTTTGATATTTTTGTACATTTCAATTTTTATT
ATGCACACTTTATTACCTTAATAAACTGTATC
Found at i:23203369 original size:24 final size:24
Alignment explanation
Indices: 23203342--23203399 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
23203332 GAAACTCTTT
23203342 GCAAAGTACAAAATAAATTTTGTA
1 GCAAAGTACAAAATAAATTTTGTA
23203366 GCAAAGTACAAAATAAATTTTGTA
1 GCAAAGTACAAAATAAATTTTGTA
*
23203390 GCCAAGTACA
1 GCAAAGTACA
23203400 GATGTTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (24 bp):
GCAAAGTACAAAATAAATTTTGTA
Found at i:23209810 original size:24 final size:24
Alignment explanation
Indices: 23209778--23209828 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
23209768 TAAGACACAT
* *
23209778 GGTCGTGTGACAGCCTGTTTCCCA
1 GGTCGTGTGACAACCAGTTTCCCA
23209802 GGTCGTGTGACAACCAGTTTCCCA
1 GGTCGTGTGACAACCAGTTTCCCA
23209826 GGT
1 GGT
23209829 TGCGTGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.27, G:0.29, T:0.27
Consensus pattern (24 bp):
GGTCGTGTGACAACCAGTTTCCCA
Found at i:23213980 original size:29 final size:28
Alignment explanation
Indices: 23213947--23214053 Score: 67
Period size: 28 Copynumber: 3.7 Consensus size: 28
23213937 AATTTGGGGT
*
23213947 TAAAAATGGGATTTTAGAAGATTCGAGGG
1 TAAAAATGGAATTTTAGAA-ATTCGAGGG
* *
23213976 T-AAAATGGTAATTTTCG-ATTCTCGAGGG
1 TAAAAATGG-AATTTTAGAAAT-TCGAGGG
* * *
23214004 TAAAAATGTAATTTTGGGAAAATT-TAGGG
1 TAAAAATGGAATTTT-AG-AAATTCGAGGG
* *
23214033 TTAAAAATGGGATTTTGGAAA
1 -TAAAAATGGAATTTTAGAAA
23214054 GTTTGGGGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
27 1 0.02
28 25 0.40
29 20 0.32
30 14 0.23
31 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (28 bp):
TAAAAATGGAATTTTAGAAATTCGAGGG
Found at i:23214034 original size:87 final size:87
Alignment explanation
Indices: 23213886--23214048 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 87
23213876 AGATGCCCGG
* * * *
23213886 GGGTAAAATAGTAATTTTTGATTCTCGAGGGCAAAATTGTAATTTTGGGATAATTTGGGGTTAAA
1 GGGTAAAATAGTAATTTTCGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTTAGGGTTAAA
23213951 AATGGGATTTTAGAAGATTCGA
66 AATGGGATTTTAGAAGATTCGA
* *
23213973 GGGTAAAATGGTAATTTTCGATTCTCGAGGGTAAAAATGTAATTTTGGGAAAATTTAGGGTTAAA
1 GGGTAAAATAGTAATTTTCGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTTAGGGTTAAA
23214038 AATGGGATTTT
66 AATGGGATTTT
23214049 GGAAAGTTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (87 bp):
GGGTAAAATAGTAATTTTCGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTTAGGGTTAAA
AATGGGATTTTAGAAGATTCGA
Found at i:23215892 original size:17 final size:17
Alignment explanation
Indices: 23215872--23215934 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
23215862 TTTTAAATGT
23215872 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAACAA
*
23215889 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAACAA
* **
23215905 ATTTAAAATTAATTCAA
1 ATTTAAATTTAAAACAA
*
23215922 ACTT-AATTTAAAA
1 ATTTAAATTTAAAA
23215935 TCCAAGTTGG
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAAATTTAAAACAA
Found at i:23215918 original size:27 final size:27
Alignment explanation
Indices: 23215856--23215927 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 27
23215846 TTTAAGTTGC
* * **
23215856 AAATTATTTTAAATGTATTTAAATTTA
1 AAATTAATTTAAATTTAAATAAATTTA
**
23215883 AAACAAATTTAAATTTAAATAAATTTA
1 AAATTAATTTAAATTTAAATAAATTTA
* *
23215910 AAATTAATTCAAACTTAA
1 AAATTAATTTAAATTTAA
23215928 TTTAAAATCC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (27 bp):
AAATTAATTTAAATTTAAATAAATTTA
Found at i:23216613 original size:196 final size:196
Alignment explanation
Indices: 23216269--23216884 Score: 955
Period size: 196 Copynumber: 3.1 Consensus size: 196
23216259 TTCATTGACC
* * * *
23216269 TGGTCTTCTTCTCTGTGTCTCATCAGGAGGATGACCATAATCATCTGTTTTAATTCGCTTCTCTG
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACC---GTC-T-TGTTTTAATTCGCTTCTCTG
* * *
23216334 GATCTCCTCAGGAAGACGAATTTGGTCCACATCTTTGTGTCTCATCAGGAAGCTAACCTTTTTAT
61 GATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTAT
**
23216399 TGCTTCGACCTACTTCTCAGTACCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCGTTGAGCG
126 TGCTTCGACCTACTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCGTTGAGCG
23216464 TTGAGT
191 TTGAGT
*
23216470 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGTCTTGTTTCAATTCGCTTCTCTGGATCT
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGTCTTGTTTTAATTCGCTTCTCTGGATCT
* *
23216535 CCTGAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTT
66 CCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTT
* *
23216600 CGACCTACTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAGATTTGCTCGCATTGAGCGTTGAG
131 CGACCTACTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCGTTGAGCGTTGAG
23216665 T
196 T
* *
23216666 TGGTATTCTTCTCTGTATCTCATCAAGATGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGG
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCG--T--CTTGTTTTAATTCGCTTCTCTGG
23216731 ATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATT
62 ATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATT
* * *
23216796 GCTTCGACCTGCTTCTCAGTGTCTCATCAGAAAG-TCGGGTTCGAAGATTTGCTCGCGTTAAGCG
127 GCTTCGACCTACTTCTCAGTGTCTCATCAGGAAGCT-GGGTTCGAAGATTTGCTCGCGTTGAGCG
*
23216860 CTGAGT
191 TTGAGT
23216866 TGGTATTCTTCTCTGTATC
1 TGGTATTCTTCTCTGTATC
23216885 AGGAAGATGA
Statistics
Matches: 385, Mismatches: 25, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
196 181 0.47
197 1 0.00
198 3 0.01
199 1 0.00
200 166 0.43
201 33 0.09
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (196 bp):
TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGTCTTGTTTTAATTCGCTTCTCTGGATCT
CCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTT
CGACCTACTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCGTTGAGCGTTGAG
T
Found at i:23228975 original size:29 final size:29
Alignment explanation
Indices: 23228909--23229131 Score: 95
Period size: 29 Copynumber: 7.7 Consensus size: 29
23228899 TTTTATTCTA
* * * *
23228909 GAGGGCAAAAATGTAATTTTGGGAA-ATTA
1 GAGGGTAAAAATGGAATTTT-AGAAGATTC
*
23228938 G-GGGTTAAAAATGGGATTTTAGAAGATTC
1 GAGGG-TAAAAATGGAATTTTAGAAGATTC
* *
23228967 GAGGGT-AAAATGGTAATTTTTG-A-TTCTC
1 GAGGGTAAAAATGG-AATTTTAGAAGAT-TC
* ** * * *
23228995 GAGGGCAAAAATATAATTTTGGGAAAATTT
1 GAGGGTAAAAATGGAATTTT-AGAAGATTC
*
23229025 G-GGGTTAAAAATGGGATTTTAGAAGATTC
1 GAGGG-TAAAAATGGAATTTTAGAAGATTC
* * *
23229054 GAGGGT-AAAATAGTAATTTTTG--GTTCTC
1 GAGGGTAAAAAT-GGAATTTTAGAAGAT-TC
* * * * *
23229082 GAGGGCAAAAGTGTAATTTTGGGAAAATTC
1 GAGGGTAAAAATGGAATTTT-AGAAGATTC
*
23229112 GAGGTTAAAAATGGAATTTT
1 GAGGGTAAAAATGGAATTTT
23229132 GGAATTTGGG
Statistics
Matches: 143, Mismatches: 34, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
27 3 0.02
28 47 0.33
29 53 0.37
30 38 0.27
31 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.32
Consensus pattern (29 bp):
GAGGGTAAAAATGGAATTTTAGAAGATTC
Found at i:23229063 original size:87 final size:87
Alignment explanation
Indices: 23228887--23229131 Score: 393
Period size: 87 Copynumber: 2.8 Consensus size: 87
23228877 GCCTGGGGGC
* *
23228887 AAAATAGTAATTTTTTATTCTAGAGGGCAAAAATGTAATTTTGGG-AAATTAGGGGTTAAAAATG
1 AAAATAGTAATTTTTGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTAGGGGTTAAAAATG
23228951 GGATTTTAGAAGATTCGAGGGT
66 GGATTTTAGAAGATTCGAGGGT
* * *
23228973 AAAATGGTAATTTTTGATTCTCGAGGGCAAAAATATAATTTTGGGAAAATTTGGGGTTAAAAATG
1 AAAATAGTAATTTTTGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTAGGGGTTAAAAATG
23229038 GGATTTTAGAAGATTCGAGGGT
66 GGATTTTAGAAGATTCGAGGGT
* * * *
23229060 AAAATAGTAATTTTTGGTTCTCGAGGGCAAAAGTGTAATTTTGGGAAAATTCGAGGTTAAAAATG
1 AAAATAGTAATTTTTGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTAGGGGTTAAAAATG
*
23229125 GAATTTT
66 GGATTTT
23229132 GGAATTTGGG
Statistics
Matches: 146, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
86 41 0.28
87 105 0.72
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.34
Consensus pattern (87 bp):
AAAATAGTAATTTTTGATTCTCGAGGGCAAAAATGTAATTTTGGGAAAATTAGGGGTTAAAAATG
GGATTTTAGAAGATTCGAGGGT
Found at i:23230976 original size:17 final size:17
Alignment explanation
Indices: 23230956--23231018 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
23230946 TTTTAAATGT
23230956 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAACAA
*
23230973 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAACAA
* **
23230989 ATTTAAAATTAATTCAA
1 ATTTAAATTTAAAACAA
*
23231006 ACTT-AATTTAAAA
1 ATTTAAATTTAAAA
23231019 TCCAAGTTGA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAAATTTAAAACAA
Found at i:23231002 original size:27 final size:27
Alignment explanation
Indices: 23230940--23231011 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 27
23230930 TTTAAGTTTC
* * **
23230940 AAATTATTTTAAATGTATTTAAATTTA
1 AAATTAATTTAAATTTAAATAAATTTA
**
23230967 AAACAAATTTAAATTTAAATAAATTTA
1 AAATTAATTTAAATTTAAATAAATTTA
* *
23230994 AAATTAATTCAAACTTAA
1 AAATTAATTTAAATTTAA
23231012 TTTAAAATCC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (27 bp):
AAATTAATTTAAATTTAAATAAATTTA
Found at i:23237984 original size:17 final size:17
Alignment explanation
Indices: 23237958--23237993 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23237948 TATTTTCTAA
*
23237958 TAAAAATTTTATGATTT
1 TAAAAATTTTATAATTT
*
23237975 TAAAATTTTTATAATTT
1 TAAAAATTTTATAATTT
23237992 TA
1 TA
23237994 TTTTGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TAAAAATTTTATAATTT
Found at i:23238850 original size:19 final size:19
Alignment explanation
Indices: 23238828--23238872 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
23238818 TTATATTAGG
23238828 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
23238847 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
23238866 ATTTAAT
1 ATTTAAT
23238873 TTATATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:23241301 original size:21 final size:21
Alignment explanation
Indices: 23241276--23241325 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
23241266 GAATTTCAGC
*
23241276 AGCAATCTATAGATTTCCAAA
1 AGCAAACTATAGATTTCCAAA
* * *
23241297 AGCAAACTGTGGATTTTCAAA
1 AGCAAACTATAGATTTCCAAA
*
23241318 AGAAAACT
1 AGCAAACT
23241326 GAGGCATCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (21 bp):
AGCAAACTATAGATTTCCAAA
Found at i:23241326 original size:21 final size:21
Alignment explanation
Indices: 23241287--23241326 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23241277 GCAATCTATA
*
23241287 GATTTCCAAAAGCAAACTGTG
1 GATTTCCAAAAGAAAACTGTG
*
23241308 GATTTTCAAAAGAAAACTG
1 GATTTCCAAAAGAAAACTG
23241327 AGGCATCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (21 bp):
GATTTCCAAAAGAAAACTGTG
Found at i:23245978 original size:103 final size:102
Alignment explanation
Indices: 23245869--23246058 Score: 276
Period size: 103 Copynumber: 1.9 Consensus size: 102
23245859 TGTGTTAGAC
* * * *
23245869 TGAGTAACCGGGGTGGAGTGCTTGGTTGTCATTTCACTTCGCGTCAAAAGGGCTAATGCATTC-T
1 TGAGTAACCGAGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAATGCATTCTT
23245933 AAA-AAAAAAGAGAAGAAAAAAATTGAGAGCATGTTGGGT
66 AAAGAAAAAA-A-AA-AAAAAAATTGAGAGCATGTTGGGT
* * *
23245972 TGAGTAACCGAGATGGAGTGCTTGGGTGTCATTTCATTTCGCGTCAAAAGGTCCAATGTATTCTT
1 TGAGTAACCGAGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAATGCATTCTT
23246037 AAAGAAAAAAAAAAAAAAAATT
66 AAAGAAAAAAAAAAAAAAAATT
23246059 CACAAAATAA
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
102 9 0.12
103 58 0.74
104 5 0.06
105 6 0.08
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (102 bp):
TGAGTAACCGAGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAATGCATTCTT
AAAGAAAAAAAAAAAAAAAATTGAGAGCATGTTGGGT
Found at i:23246598 original size:10 final size:10
Alignment explanation
Indices: 23246583--23246611 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
23246573 AAAGACTTGA
23246583 TTTTATTTTT
1 TTTTATTTTT
23246593 TTTTA-TTTT
1 TTTTATTTTT
23246602 TTTTATTTTT
1 TTTTATTTTT
23246612 AAAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:23246654 original size:19 final size:19
Alignment explanation
Indices: 23246632--23246676 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
23246622 TTATATTAGG
23246632 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
23246651 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
23246670 ATTTAAT
1 ATTTAAT
23246677 TTATTTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:23251534 original size:17 final size:17
Alignment explanation
Indices: 23251512--23251587 Score: 91
Period size: 17 Copynumber: 4.5 Consensus size: 17
23251502 CATTTGGACC
23251512 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
23251529 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
* * * *
23251546 TTTAGAATGAGTTCAAA
1 TTTAAAATAAATTTAAA
*
23251563 TTCAAAAATAAATTT-AA
1 TT-TAAAATAAATTTAAA
23251580 TTTAAAAT
1 TTTAAAAT
23251588 TGGATCCAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
16 5 0.10
17 36 0.75
18 7 0.15
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (17 bp):
TTTAAAATAAATTTAAA
Found at i:23254654 original size:21 final size:21
Alignment explanation
Indices: 23254615--23254654 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23254605 ATTGTTGGAA
*
23254615 GTAACAATGAAATGGTAAAAT
1 GTAACAAGGAAATGGTAAAAT
* *
23254636 GTAACAAGGACATGTTAAA
1 GTAACAAGGAAATGGTAAA
23254655 TTCAAGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (21 bp):
GTAACAAGGAAATGGTAAAAT
Found at i:23258091 original size:55 final size:55
Alignment explanation
Indices: 23257927--23258100 Score: 158
Period size: 55 Copynumber: 3.1 Consensus size: 55
23257917 TCAGTTTTAA
23257927 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGT
1 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGT
* ** * * ** *
23257982 GGAATAGTCTGATAGCTAATCCTT-ACCAA-GTGAATAACCTTT--AAAGTGGTAAATTAATAGT
1 GG-ATCG-AAGA-A-C-AA--CTTGA--AACCT-AATGATTTTTCGATAGTGGTAAATTAATAGT
23258043 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGT
1 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGT
23258098 GGA
1 GGA
23258101 ATAGTCTGAT
Statistics
Matches: 89, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
53 9 0.10
54 4 0.04
55 24 0.27
56 5 0.06
57 3 0.03
58 2 0.02
59 3 0.03
60 5 0.06
61 21 0.24
62 4 0.04
63 9 0.10
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.30
Consensus pattern (55 bp):
GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGT
Found at i:23258131 original size:116 final size:116
Alignment explanation
Indices: 23257927--23258144 Score: 436
Period size: 116 Copynumber: 1.9 Consensus size: 116
23257917 TCAGTTTTAA
23257927 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGTGGAATAGTCT
1 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGTGGAATAGTCT
23257992 GATAGCTAATCCTTACCAAGTGAATAACCTTTAAAGTGGTAAATTAATAGT
66 GATAGCTAATCCTTACCAAGTGAATAACCTTTAAAGTGGTAAATTAATAGT
23258043 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGTGGAATAGTCT
1 GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGTGGAATAGTCT
23258108 GATAGCTAATCCTTACCAAGTGAATAACCTTTAAAGT
66 GATAGCTAATCCTTACCAAGTGAATAACCTTTAAAGT
23258145 AACTTTCACG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 102 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (116 bp):
GGATCGAAGAACAACTTGAAACCTAATGATTTTTCGATAGTGGTAAATTAATAGTGGAATAGTCT
GATAGCTAATCCTTACCAAGTGAATAACCTTTAAAGTGGTAAATTAATAGT
Found at i:23266198 original size:60 final size:60
Alignment explanation
Indices: 23266105--23266238 Score: 187
Period size: 60 Copynumber: 2.2 Consensus size: 60
23266095 GAAGTTCCCG
* *
23266105 AACTTTTTCAAAATTATATTCTGACCTCCAAACTCTTCTAAAATTACATTTTAACCCCCT
1 AACTTTTTCAAAATTATATTCTGACCACCAAACTCTTCTAAAATTACATTTTAACCCCCA
* * * ** *
23266165 AACTTTTTCAAAATTATATTTTGACCACTAAACTTTTCTAAAATTTTATTTTAACCCTCA
1 AACTTTTTCAAAATTATATTCTGACCACCAAACTCTTCTAAAATTACATTTTAACCCCCA
*
23266225 AACTTTTCCAAAAT
1 AACTTTTTCAAAAT
23266239 CACTTTTTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.35, C:0.22, G:0.01, T:0.41
Consensus pattern (60 bp):
AACTTTTTCAAAATTATATTCTGACCACCAAACTCTTCTAAAATTACATTTTAACCCCCA
Found at i:23266231 original size:30 final size:30
Alignment explanation
Indices: 23266109--23266238 Score: 124
Period size: 30 Copynumber: 4.4 Consensus size: 30
23266099 TTCCCGAACT
* *
23266109 TTTTC-AAAATTATATTCTGA-CCTCCAAAC
1 TTTTCTAAAATTATATTTTAACCCT-CAAAC
* * * *
23266138 TCTTCTAAAATTACATTTTAACCCCCTAAC
1 TTTTCTAAAATTATATTTTAACCCTCAAAC
*
23266168 TTTT-TCAAAATTATATTTTGACCACT-AAAC
1 TTTTCT-AAAATTATATTTTAACC-CTCAAAC
*
23266198 TTTTCTAAAATTTTATTTTAACCCTCAAAC
1 TTTTCTAAAATTATATTTTAACCCTCAAAC
*
23266228 TTTTCCAAAAT
1 TTTTCTAAAAT
23266239 CACTTTTTAC
Statistics
Matches: 81, Mismatches: 14, Indels: 11
0.76 0.13 0.10
Matches are distributed among these distances:
29 7 0.09
30 70 0.86
31 4 0.05
ACGTcount: A:0.35, C:0.22, G:0.02, T:0.42
Consensus pattern (30 bp):
TTTTCTAAAATTATATTTTAACCCTCAAAC
Found at i:23266247 original size:30 final size:31
Alignment explanation
Indices: 23266105--23266254 Score: 111
Period size: 30 Copynumber: 5.1 Consensus size: 31
23266095 GAAGTTCCCG
* * *
23266105 AACTTTTTCAAAATTA-TATTCTGA-CCTCCA
1 AACTTTTCCAAAATTACTATTTTAACCCT-CA
* * * *
23266135 AACTCTTCTAAAATTAC-ATTTTAACCCCCT
1 AACTTTTCCAAAATTACTATTTTAACCCTCA
* *
23266165 AACTTTTTCAAAATTA-TATTTTGACCACT-A
1 AACTTTTCCAAAATTACTATTTTAACC-CTCA
* *
23266195 AACTTTTCTAAAATT-TTATTTTAACCCTCA
1 AACTTTTCCAAAATTACTATTTTAACCCTCA
*
23266225 AACTTTTCCAAAATCACT-TTTT-ACCC-CA
1 AACTTTTCCAAAATTACTATTTTAACCCTCA
23266253 AA
1 AA
23266255 ATTCTCAAAA
Statistics
Matches: 94, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
28 4 0.04
29 6 0.06
30 80 0.85
31 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.01, T:0.40
Consensus pattern (31 bp):
AACTTTTCCAAAATTACTATTTTAACCCTCA
Found at i:23271588 original size:17 final size:16
Alignment explanation
Indices: 23271566--23271629 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 16
23271556 GGATTCGATG
*
23271566 AAGAAAAATAAATAAAA
1 AAGAAAAAGAAA-AAAA
23271583 AAGAAAAAGAAAAAAA
1 AAGAAAAAGAAAAAAA
23271599 TAA-AAAAGAGAAAAAAA
1 -AAGAAAA-AGAAAAAAA
*
23271616 AGAGAAAATGAAAA
1 A-AGAAAAAGAAAA
23271630 GGAGAGGTCG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
16 9 0.22
17 28 0.68
18 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAGAAAAAGAAAAAAA
Found at i:23271596 original size:23 final size:22
Alignment explanation
Indices: 23271566--23271616 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
23271556 GGATTCGATG
23271566 AAGAAAAATAAATAAAAAAGAAA
1 AAGAAAAA-AAATAAAAAAGAAA
*
23271589 AAG-AAAAAAATAAAAAAGAGA
1 AAGAAAAAAAATAAAAAAGAAA
23271610 AA-AAAAA
1 AAGAAAAA
23271617 GAGAAAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 19 0.73
22 4 0.15
23 3 0.12
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (22 bp):
AAGAAAAAAAATAAAAAAGAAA
Found at i:23271630 original size:13 final size:11
Alignment explanation
Indices: 23271579--23271623 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
23271569 AAAAATAAAT
23271579 AAAAAAGA-AA
1 AAAAAAGAGAA
23271589 AAGAAAA-A-AA
1 AA-AAAAGAGAA
23271599 TAAAAAAGAGAA
1 -AAAAAAGAGAA
23271611 AAAAAAGAGAA
1 AAAAAAGAGAA
23271622 AA
1 AA
23271624 TGAAAAGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 9 0.29
11 20 0.65
12 2 0.06
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (11 bp):
AAAAAAGAGAA
Found at i:23271690 original size:45 final size:45
Alignment explanation
Indices: 23271626--23271724 Score: 162
Period size: 45 Copynumber: 2.2 Consensus size: 45
23271616 AGAGAAAATG
*
23271626 AAAAGGAGAGGTCGAGGTGAAAACTCGTAAAGAACATCTCGAAAC
1 AAAAGGAGAGGTCAAGGTGAAAACTCGTAAAGAACATCTCGAAAC
*
23271671 AAAAGGAGAGGTCAAGGTGAAAACTCGTAAAGGACATCTCGAAAC
1 AAAAGGAGAGGTCAAGGTGAAAACTCGTAAAGAACATCTCGAAAC
**
23271716 CTAAGGAGA
1 AAAAGGAGA
23271725 CTTGAGTTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.44, C:0.15, G:0.27, T:0.13
Consensus pattern (45 bp):
AAAAGGAGAGGTCAAGGTGAAAACTCGTAAAGAACATCTCGAAAC
Found at i:23273278 original size:42 final size:42
Alignment explanation
Indices: 23273226--23273404 Score: 163
Period size: 42 Copynumber: 4.3 Consensus size: 42
23273216 CATATCATCG
*
23273226 AATCTCTTACCCCGACCATGAGGCAGATGAAAGACATCATAC
1 AATCTCTTACCCCGATCATGAGGCAGATGAAAGACATCATAC
* * * *
23273268 AACCTCTTACCCCGATCGTG-GGCCAAATTG-AAGACATCATCC
1 AATCTCTTACCCCGATCATGAGG-CAGA-TGAAAGACATCATAC
* * * * *
23273310 AATCTCTTACCCCGATCTTGGGGCAGATTAAAGATATCATGC
1 AATCTCTTACCCCGATCATGAGGCAGATGAAAGACATCATAC
* *
23273352 AATCT-TTCACCTCGATCATGAGGCAGATTG-AAGAC--CATCC
1 AATCTCTT-ACCCCGATCATGAGGCAGA-TGAAAGACATCATAC
*
23273392 AATCTTTTACCCC
1 AATCTCTTACCCC
23273405 TAAGTCAAAA
Statistics
Matches: 112, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
40 13 0.12
41 7 0.06
42 87 0.78
43 5 0.04
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
AATCTCTTACCCCGATCATGAGGCAGATGAAAGACATCATAC
Found at i:23273368 original size:84 final size:84
Alignment explanation
Indices: 23273219--23273404 Score: 218
Period size: 84 Copynumber: 2.2 Consensus size: 84
23273209 AAAGTTTCAT
*
23273219 ATCATCGAATCTCTTACCCCGACCATGAGGCAGATGAAAGACATCATACAACCTCTTACCCCGAT
1 ATCATCCAATCTCTTACCCCGACCATGAGGCAGATGAAAGACATCATACAACCTCTTACCCCGAT
*
23273284 CGTG-GGCCAAATTGAAGAC
66 CATGAGG-CAAATTGAAGAC
* * * * * * * *
23273303 ATCATCCAATCTCTTACCCCGATCTTGGGGCAGATTAAAGATATCATGCAATCT-TTCACCTCGA
1 ATCATCCAATCTCTTACCCCGACCATGAGGCAGATGAAAGACATCATACAACCTCTT-ACCCCGA
*
23273367 TCATGAGGCAGATTGAAGAC
65 TCATGAGGCAAATTGAAGAC
*
23273387 --CATCCAATCTTTTACCCC
1 ATCATCCAATCTCTTACCCC
23273405 TAAGTCAAAA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
82 17 0.19
83 2 0.02
84 67 0.76
85 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (84 bp):
ATCATCCAATCTCTTACCCCGACCATGAGGCAGATGAAAGACATCATACAACCTCTTACCCCGAT
CATGAGGCAAATTGAAGAC
Found at i:23273601 original size:91 final size:90
Alignment explanation
Indices: 23273376--23273785 Score: 497
Period size: 91 Copynumber: 4.5 Consensus size: 90
23273366 ATCATGAGGC
* * * * *
23273376 AGATTGAAGACCA-TCCAATCTTTTACCCCTAAGTCAAAAGAGGCAGATTGAAG--ACCATCCGA
1 AGATTGAAGCCCATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCATCATCCAA
23273438 TCTTTTACCCCTAGTCAAGA-GGGA
66 TCTTTTACCCCTAGTCAAGAGGGGA
* * * *
23273462 CAGATTAAAGACCATTCCAATCTTTTACCCTTAAGTCAAGAGAGGCAGATTGAAGCCATCATCCA
1 -AGATTGAAGCCCATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCATCATCCA
*
23273527 GTCTTTTACCCCTAGTCAAGAGGGGA
65 ATCTTTTACCCCTAGTCAAGAGGGGA
* *
23273553 AGATTGAAGCCGCATTCCAATCTTTTACCCCTAAGTCAAGTGGGGCAGATTGAAGCCATCATCTA
1 AGATTGAAGCC-CATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCATCATCCA
* * ** * *
23273618 ATCATTTACTACAAAGTCAAGAGGAGT
65 ATCTTTTAC-CCCTAGTCAAGAGGGGA
*
23273645 AGATTGAAGCCACATTCTAATCTTTTACCCCTAAGTCAAGA-GGGCAGATTGAAGCCATCATCCA
1 AGATTGAAGCC-CATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCATCATCCA
* *
23273709 ATCTTTTACCCCTAAGTCAATAGGGGC
65 ATCTTTTACCCCT-AGTCAAGAGGGGA
* *** *
23273736 AGGTTGAAGCCACATTTTTATCATTTACCCCTAAGTCAAGAGGGGCAGAT
1 AGATTGAAGCC-CATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGAT
23273786 CAAACACCAT
Statistics
Matches: 281, Mismatches: 34, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
87 12 0.04
88 38 0.14
90 36 0.13
91 137 0.49
92 58 0.21
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (90 bp):
AGATTGAAGCCCATTCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCATCATCCAA
TCTTTTACCCCTAGTCAAGAGGGGA
Found at i:23273607 original size:46 final size:44
Alignment explanation
Indices: 23273373--23273785 Score: 445
Period size: 46 Copynumber: 9.2 Consensus size: 44
23273363 TCGATCATGA
* * *
23273373 GGCAGATTGAAGACCATCCAATCTTTTACCCCTAAGTCAAAAGA
1 GGCAGATTGAAGCCCATCCAATCTTTTACCCCTAAGTCAAGAGG
* *
23273417 GGCAGATTGAAGACCATCCGATCTTTTACCCCT-AGTCAAGAGG
1 GGCAGATTGAAGCCCATCCAATCTTTTACCCCTAAGTCAAGAGG
* * * * *
23273460 GACAGATTAAAGACCATTCCAATCTTTTACCCTTAAGTCAAGAGA
1 GGCAGATTGAAGCCCA-TCCAATCTTTTACCCCTAAGTCAAGAGG
*
23273505 GGCAGATTGAAGCCATCATCCAGTCTTTTACCCCT-AGTCAAGAGG
1 GGCAGATTGAAGCC--CATCCAATCTTTTACCCCTAAGTCAAGAGG
* *
23273550 GGAAGATTGAAGCCGCATTCCAATCTTTTACCCCTAAGTCAAGTGG
1 GGCAGATTGAAGCC-CA-TCCAATCTTTTACCCCTAAGTCAAGAGG
* * ** *
23273596 GGCAGATTGAAGCCATCATCTAATCATTTACTACAAAGTCAAGAGG
1 GGCAGATTGAAGCC--CATCCAATCTTTTACCCCTAAGTCAAGAGG
* * *
23273642 AGTAGATTGAAGCCACATTCTAATCTTTTACCCCTAAGTCAAGA-G
1 GGCAGATTGAAGCC-CA-TCCAATCTTTTACCCCTAAGTCAAGAGG
*
23273687 GGCAGATTGAAGCCATCATCCAATCTTTTACCCCTAAGTCAATAGG
1 GGCAGATTGAAGCC--CATCCAATCTTTTACCCCTAAGTCAAGAGG
* *** *
23273733 GGCAGGTTGAAGCCACATTTTTATCATTTACCCCTAAGTCAAGAGG
1 GGCAGATTGAAGCC-CA-TCCAATCTTTTACCCCTAAGTCAAGAGG
23273779 GGCAGAT
1 GGCAGAT
23273786 CAAACACCAT
Statistics
Matches: 312, Mismatches: 46, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
43 22 0.07
44 49 0.16
45 99 0.32
46 138 0.44
47 4 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (44 bp):
GGCAGATTGAAGCCCATCCAATCTTTTACCCCTAAGTCAAGAGG
Found at i:23273649 original size:137 final size:135
Alignment explanation
Indices: 23273371--23273785 Score: 474
Period size: 137 Copynumber: 3.1 Consensus size: 135
23273361 CCTCGATCAT
* * * *
23273371 GAGGCAGATTGAAGAC-CATCCAATCTTTTACCCCTAAGTCAAAAGAGGCAGATTGAAGACCATC
1 GAGGCAGATTGAAGCCACATCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCCATC
* * * * * *
23273435 CGATCTTTTACCCCT-AGTCAAGAGGGACAGATTAAAGACCAT--TCCAATCTTTTACCCTTAAG
66 CAATCTTTTACCCCTAAGTCAAGTGGGGCAGATTGAAG-CCATCATCTAATCATTTACCC-TAAG
23273497 TCAAGA-
129 TCAAGAG
* *
23273503 GAGGCAGATTGAAGCCATCATCCAGTCTTTTACCCCT-AGTCAAGAGGGGAAGATTGAAGCCGCA
1 GAGGCAGATTGAAGCCA-CATCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCC-CA
* *
23273567 TTCCAATCTTTTACCCCTAAGTCAAGTGGGGCAGATTGAAGCCATCATCTAATCATTTACTACAA
64 -TCCAATCTTTTACCCCTAAGTCAAGTGGGGCAGATTGAAGCCATCATCTAATCATTTAC-CCTA
23273632 AGTCAAGAG
127 AGTCAAGAG
* *
23273641 GA-GTAGATTGAAGCCACATTCTAATCTTTTACCCCTAAGTCAAGA-GGGCAGATTGAAGCCATC
1 GAGGCAGATTGAAGCCACA-TCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCC--C
* * *
23273704 ATCCAATCTTTTACCCCTAAGTCAA-TAGGGGCAGGTTGAAGCCA-CATTTTTATCATTTACCCC
63 ATCCAATCTTTTACCCCTAAGTCAAGT-GGGGCAGATTGAAGCCATCA-TCTAATCATTTA-CCC
23273767 TAAGTCAAGAG
125 TAAGTCAAGAG
23273778 G-GGCAGAT
1 GAGGCAGAT
23273786 CAAACACCAT
Statistics
Matches: 242, Mismatches: 25, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
132 15 0.06
133 20 0.08
134 20 0.08
135 20 0.08
136 24 0.10
137 129 0.53
138 14 0.06
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (135 bp):
GAGGCAGATTGAAGCCACATCCAATCTTTTACCCCTAAGTCAAGAGGGGCAGATTGAAGCCCATC
CAATCTTTTACCCCTAAGTCAAGTGGGGCAGATTGAAGCCATCATCTAATCATTTACCCTAAGTC
AAGAG
Found at i:23274076 original size:48 final size:48
Alignment explanation
Indices: 23274002--23274211 Score: 165
Period size: 48 Copynumber: 4.6 Consensus size: 48
23273992 TTCAAGCCTC
*
23274002 CATCTTTCTGATGAGATACAGTGAAGTGGGTTAAAACAATAAAGCGTT
1 CATCTTTCTGATGAGATACAGAGAAGTGGGTTAAAACAATAAAGCGTT
* * * *
23274050 CATCTTTCTGATGAGATACAAAGAAGT--G----AAC--CAAATC-TG
1 CATCTTTCTGATGAGATACAGAGAAGTGGGTTAAAACAATAAAGCGTT
* * * * **
23274089 C--CTTGCCGATGAGATACAGAGAAGTGGATTAAATCAATCAAA-CCCT
1 CATCTTTCTGATGAGATACAGAGAAGTGGGTTAAAACAAT-AAAGCGTT
* * * * * *
23274135 CATCTTCCTGACGAGATATAGAGAAGTGGGTCAAAGCAATAAAGCGAT
1 CATCTTTCTGATGAGATACAGAGAAGTGGGTTAAAACAATAAAGCGTT
*
23274183 CATCTTTCTGATGAGATACAAAGAAGTGG
1 CATCTTTCTGATGAGATACAGAGAAGTGG
23274212 ACCAAATCCG
Statistics
Matches: 123, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
37 21 0.17
39 2 0.02
40 4 0.03
42 3 0.02
43 2 0.02
45 1 0.01
46 5 0.04
47 3 0.02
48 82 0.67
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (48 bp):
CATCTTTCTGATGAGATACAGAGAAGTGGGTTAAAACAATAAAGCGTT
Found at i:23274231 original size:37 final size:37
Alignment explanation
Indices: 23274190--23274284 Score: 136
Period size: 37 Copynumber: 2.6 Consensus size: 37
23274180 GATCATCTTT
*
23274190 CTGATGAGATACAAAGAAGTGGACCAAATCCGCCTTC
1 CTGATGAGATACAAAGAAGTGGACCAAATCCACCTTC
* **
23274227 CTGATGAGATACAAAGAAGTTGACCAAATTTACCTTC
1 CTGATGAGATACAAAGAAGTGGACCAAATCCACCTTC
* *
23274264 TTGATGAGATACAGAGAAGTG
1 CTGATGAGATACAAAGAAGTG
23274285 AATTAAATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (37 bp):
CTGATGAGATACAAAGAAGTGGACCAAATCCACCTTC
Found at i:23274245 original size:133 final size:133
Alignment explanation
Indices: 23274002--23274246 Score: 384
Period size: 133 Copynumber: 1.8 Consensus size: 133
23273992 TTCAAGCCTC
* * * * *
23274002 CATCTTTCTGATGAGATACAGTGAAGTGGGTTAAAACAATAAAGCGTTCATCTTTCTGATGAGAT
1 CATCTTCCTGACGAGATACAGAGAAGTGGGTCAAAACAATAAAGCGATCATCTTTCTGATGAGAT
* *
23274067 ACAAAGAAGTGAACCAAATCTGCCTTGCCGATGAGATACAGAGAAGTGGATTAAATCAATCAAAC
66 ACAAAGAAGTGAACCAAATCCGCCTTGCCGATGAGATACAAAGAAGTGGATTAAATCAATCAAAC
23274132 CCT
131 CCT
* *
23274135 CATCTTCCTGACGAGATATAGAGAAGTGGGTCAAAGCAATAAAGCGATCATCTTTCTGATGAGAT
1 CATCTTCCTGACGAGATACAGAGAAGTGGGTCAAAACAATAAAGCGATCATCTTTCTGATGAGAT
*
23274200 ACAAAGAAGTGGACCAAATCCGCCTT-CCTGATGAGATACAAAGAAGT
66 ACAAAGAAGTGAACCAAATCCGCCTTGCC-GATGAGATACAAAGAAGT
23274247 TGACCAAATT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 2 0.02
133 99 0.98
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (133 bp):
CATCTTCCTGACGAGATACAGAGAAGTGGGTCAAAACAATAAAGCGATCATCTTTCTGATGAGAT
ACAAAGAAGTGAACCAAATCCGCCTTGCCGATGAGATACAAAGAAGTGGATTAAATCAATCAAAC
CCT
Found at i:23274532 original size:85 final size:85
Alignment explanation
Indices: 23274386--23274550 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 85
23274376 AACTCCCATC
* * *
23274386 TTCTTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCTATCATCTTCCTGATGAGATACAG
1 TTCTTAATAAGATACAGAGAAGTGGATCAAAGCAATAAAGCTATCATCTTCCTGATGAGATACAG
* *
23274451 AGAAGTGGATCAAATCCTCT
66 AGAAGTAGACCAAATCCTCT
** * *
23274471 TTCTTAATAAGATACAGAGAAGTGGATCAAATTAATGAAA-C-AGTCATGTTCCTGATTAGATAC
1 TTCTTAATAAGATACAGAGAAGTGGATCAAAGCAAT-AAAGCTA-TCATCTTCCTGATGAGATAC
23274534 AGAGAAGTAGACCAAAT
64 AGAGAAGTAGACCAAAT
23274551 TAATAAGCAA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 1 0.01
85 65 0.94
86 3 0.04
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (85 bp):
TTCTTAATAAGATACAGAGAAGTGGATCAAAGCAATAAAGCTATCATCTTCCTGATGAGATACAG
AGAAGTAGACCAAATCCTCT
Found at i:23274623 original size:209 final size:209
Alignment explanation
Indices: 23274223--23274760 Score: 753
Period size: 209 Copynumber: 2.6 Consensus size: 209
23274213 CCAAATCCGC
* * * *
23274223 CTTCCTGATGAGATACAAAGAAGTTGACCAAAT-TTACCTTCTTGATGAGATACAGAGAAGTGAA
1 CTTCCTGATGAGATACAGAGAAGTGGA-CAAATCCT-CCTTCTTGATGAGATACAGAGAAGTGGA
*
23274287 TTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATCAATGAAGCA
64 TTAAATCAATGAAGCAGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATCAATGAAGCA
* * *
23274352 AAGCTCAATGTGAGTGAAACTTCAAACTCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAA
129 AAGCTCAATGTAAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAA
* *
23274417 GCAATAAAGCTATCAT
194 GCAATAAAACAATCAT
* * *
23274433 CTTCCTGATGAGATACAGAGAAGTGGATCAAATCCTCTTTCTTAATAAGATACAGAGAAGTGGAT
1 CTTCCTGATGAGATACAGAGAAGTGGA-CAAATCCTCCTTCTTGATGAGATACAGAGAAGTGGAT
* * * * * *
23274498 CAAATTAATGAAACAGTCATGTTCCTGATTAGATACAG-AGAAGTAGACCAAATTAAT-AAGCAA
65 TAAATCAATGAAGCAGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATCAATGAAGCAA
* *
23274561 AGCTCACTGTAAGTGAAGCTTCAAACCCCCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAA
130 AGCTCAATGTAAGTGAAACTTCAAA-CCCCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAA
23274626 GCAATAAAACAATCAT
194 GCAATAAAACAATCAT
* *
23274642 CTTCCTGATGAGATAAAGAGAAGTGGACTAAATCCGCCTTCTTGATGAGATACAGAGAAGTGGAT
1 CTTCCTGATGAGATACAGAGAAGTGGAC-AAATCCTCCTTCTTGATGAGATACAGAGAAGTGGAT
** *
23274707 TAAATCAAT-AAGGCAGTCATCTTCCTGATGAGATACATTA-AAGTGGACCAAATC
65 TAAATCAATGAA-GCAGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATC
23274761 CATCTTCCTG
Statistics
Matches: 288, Mismatches: 35, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
208 31 0.11
209 168 0.58
210 88 0.31
211 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (209 bp):
CTTCCTGATGAGATACAGAGAAGTGGACAAATCCTCCTTCTTGATGAGATACAGAGAAGTGGATT
AAATCAATGAAGCAGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATCAATGAAGCAAA
GCTCAATGTAAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAAGC
AATAAAACAATCAT
Found at i:23274699 original size:37 final size:37
Alignment explanation
Indices: 23274642--23274712 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
23274632 AAACAATCAT
23274642 CTTCCTGATGAGATAAAGAGAAGTGGACTAAATCCGC
1 CTTCCTGATGAGATAAAGAGAAGTGGACTAAATCCGC
* * *
23274679 CTTCTTGATGAGATACAGAGAAGTGGATTAAATC
1 CTTCCTGATGAGATAAAGAGAAGTGGACTAAATC
23274713 AATAAGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (37 bp):
CTTCCTGATGAGATAAAGAGAAGTGGACTAAATCCGC
Found at i:23274737 original size:85 final size:85
Alignment explanation
Indices: 23274594--23274845 Score: 319
Period size: 85 Copynumber: 3.0 Consensus size: 85
23274584 AACCCCCCAT
* * * *
23274594 CTTCTTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAACAATCATCTTCCTGATGAGATAAA
1 CTTCTTGATGAGATACAGAGAAGTGGATCAAATCAATAAAACAGTCATCTTCCTGATGAGATAAA
* *
23274659 GAGAAGTGGACTAAATCCGC
66 GAGAAGTGGACCAAATCCAC
* **
23274679 CTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATAAGGCAGTCATCTTCCTGATGAGATACA
1 CTTCTTGATGAGATACAGAGAAGTGGATCAAATCAATAAAACAGTCATCTTCCTGATGAGATA-A
** *
23274744 TTA-AAGTGGACCAAATCCAT
65 AGAGAAGTGGACCAAATCCAC
* * * *
23274764 CTTCCTGATGAGATACAGAAAAGTGGATCACAAT-AATAAATCAGTCATCTTCCTGATGAGATAT
1 CTTCTTGATGAGATACAGAGAAGTGGATCA-AATCAATAAAACAGTCATCTTCCTGATGAGATAA
*
23274828 AGAGAAGTAGACCAAATC
65 AGAGAAGTGGACCAAATC
23274846 AATGAAGCAA
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 1 0.01
85 137 0.96
86 5 0.03
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (85 bp):
CTTCTTGATGAGATACAGAGAAGTGGATCAAATCAATAAAACAGTCATCTTCCTGATGAGATAAA
GAGAAGTGGACCAAATCCAC
Found at i:23275031 original size:201 final size:202
Alignment explanation
Indices: 23274747--23275256 Score: 618
Period size: 201 Copynumber: 2.5 Consensus size: 202
23274737 AGATACATTA
* * * * *
23274747 AAGTGGACCAAATCCATCTTCCTGATGAGATACAGAAAAGTGGATCACAATAATAAATCAGTCAT
1 AAGTAGACCAAAT-CATCTTCCTGATGAGATATAGAGAAGTGGATTA-AATAATAAAACAGTCAT
* *
23274812 CTTCCTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTT
64 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTT
* * * *
23274877 CAAAAT-CCATC-TTCTTGATGAGATACAGAGAATTGGGTCAATGCAGATCA-TC-TT-CTTGAC
129 CAAAATCCCATCTTTC-TGATAAGATACAGAGAAGTGGGTCAAAGCA-ATAAGTCATTACTTGA-
23274937 T-AGATAAAGAG
191 TGAGATAAAGAG
* *
23274948 AAGTAGACCAAATCAGTCTTCCTGATGAGATATAGAGAAGTGGATTAAATCAATGAAGCAGTCAT
1 AAGTAGACCAAATCA-TCTTCCTGATGAGATATAGAGAAGTGGATTAAAT-AATAAAACAGTCAT
*
23275013 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGTAAAGCTCAATGTGAGTGAAACTT
64 CTTCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTT
* *
23275078 CAAAGTCCCATCTTTCTGATAAGATATAGAGAAGTGGGTCAAAGCAATAAGGTGGTCATTTACTT
129 CAAAATCCCATCTTTCTGATAAGATACAGAGAAGTGGGTCAAAGCAATAA----GTCA-TTACTT
*
23275143 GATGAGATACAGAG
189 GATGAGATAAAGAG
* * * * *
23275157 AAGTAGACCGAATCCTCCTTTCCTGATAAGATATAGAGAAGTGGATTAAATTAATAAAACGGACA
1 AAGTAGACCAAATCAT-C-TTCCTGATGAGATATAGAGAAGTGGATTAAA-TAATAAAACAGTCA
* * *
23275222 TCTTCTTCATGAGATACAGAGAAGTGGACCAAATC
63 TCTTCTTGATGAGATATAGAGAAGTAGACCAAATC
23275257 CACCTTCCTG
Statistics
Matches: 267, Mismatches: 26, Indels: 23
0.84 0.08 0.07
Matches are distributed among these distances:
200 5 0.02
201 122 0.46
202 31 0.12
203 3 0.01
206 2 0.01
208 4 0.01
209 28 0.10
210 71 0.27
211 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (202 bp):
AAGTAGACCAAATCATCTTCCTGATGAGATATAGAGAAGTGGATTAAATAATAAAACAGTCATCT
TCTTGATGAGATATAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTTCA
AAATCCCATCTTTCTGATAAGATACAGAGAAGTGGGTCAAAGCAATAAGTCATTACTTGATGAGA
TAAAGAG
Found at i:23275126 original size:495 final size:498
Alignment explanation
Indices: 23274223--23276761 Score: 1469
Period size: 501 Copynumber: 5.1 Consensus size: 498
23274213 CCAAATCCGC
* ** * *
23274223 CTTCCTGATGAGATACAAAGAAGTTGACCAAATTTACCTTCTTGATGAGATACAGAGAAGTGAAT
1 CTTCCTGATGAGATACAAAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGAT
* *
23274288 TAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAAGAAGTAGACCAAATCAATGAAGCAA
66 TAAAT-AATAAAGCAGTCATCTTCCTGATGAGATACAG-AGAAGTAGACCAAATCAATGAAGCAA
*
23274353 AGCTCAATGTGAGTGAAACTTCAAACTCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAAG
129 AGCTCAATGTGAGTGAAACTTCAAAATCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAAG
* * * *
23274418 CAATAAAGCTATCATCTTCCTGATGAGATACAGAGAAGTGGATCAAATCCTCTTTCTTAATAAGA
194 C----AAGC-ATCATCTTCCTGATGAGATAAAGAGAAGTAGACCAAATCCTCTTTCCTAATAAGA
* * *
23274483 TACAGAGAAGTGGATCAAATTAATGAAACAGTCATGTTCCTGATTAGATACAGAGAAGTAGACCA
254 TACAGAGAAGTGGATCAAATCAATGAAACAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCA
* * * *
23274548 AATTAATAAGCAAAGCTCACTGTAAGTGAAGCTTCAAACCCCCCATCTTCTTGATGAGATACAAA
319 AATCAATAAGCAAAGCTCAATGTAAGTGAAACTTCAAACCCCCCATCTTCTTGATAAGATACAAA
* *
23274613 GAAGTGGGTCAAAGCAATAAAACAATCATCTT-CCTGATGAGATAAAGAGAAGTGGACTAAATCC
384 GAAGTGGGTCAAAGCAATAAAACAATCAT-TTACCTGATGAGATAAAGAGAAGTAGACCAAATCC
* * ** *
23274677 GCC-TTCTTGATGAGATACAGAGAAGTGGATTAAATCAATAAGGCAGTCAT
448 GCCTTTCCTGATAAGATACAGAGAAGTGGATTAAATCAATAAAACAGACAT
* * *
23274727 CTTCCTGATGAGATACATTA-AAGTGGACCAAATCCATCTTCCTGATGAGATACAGAAAAGTGGA
1 CTTCCTGATGAGATACA-AAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGA
* * *
23274791 TCACAATAATAAATCAGTCATCTTCCTGATGAGATATAGAGAAGTAGACCAAATCAATGAAGCAA
65 TTA-AATAATAAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAA
* *
23274856 AGCTCAATGTGAGTGAAACTTCAAAAT-CCATCTTCTTGATGAGATACAGAGAATTGGGTCAATG
129 AGCTCAATGTGAGTGAAACTTCAAAATCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAAG
* * * * *
23274920 C-AG-ATCATCTTCTTGACT-AGATAAAGAGAAGTAGACCAAATCAGTC-TTCCTGATGAGATAT
194 CAAGCATCATCTTCCTGA-TGAGATAAAGAGAAGTAGACCAAATC-CTCTTTCCTAATAAGATAC
* * * *
23274981 AGAGAAGTGGATTAAATCAATGAAGCAGTCATCTTCTTGATGAGATATAGAGAAGTAGACCAAAT
257 AGAGAAGTGGATCAAATCAATGAAACAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAAT
* * ** * *
23275046 CAATAAAGTAAAGCTCAATGTGAGTGAAACTTCAAA-GTCCCATCTT-TCTGATAAGATATAGAG
322 CAAT-AAGCAAAGCTCAATGTAAGTGAAACTTCAAACCCCCCATCTTCT-TGATAAGATACAAAG
***** * * * *
23275109 AAGTGGGTCAAAGCAATAAGGTGGTCATTTACTTGATGAGATACAGAGAAGTAGACCGAATCCTC
385 AAGTGGGTCAAAGCAATAAAACAATCATTTACCTGATGAGATAAAGAGAAGTAGACCAAATCCGC
* * *
23275174 CTTTCCTGATAAGATATAGAGAAGTGGATTAAATTAATAAAACGGACAT
450 CTTTCCTGATAAGATACAGAGAAGTGGATTAAATCAATAAAACAGACAT
* * * *
23275223 CTTCTTCATGAGATACAGAGAAGTGGACCAAATCCACCTTCCTGATGAGAGACAGAGAAGTGGAT
1 CTTCCTGATGAGATACAAAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGAT
* ** * * * ****
23275288 TAAATCATAAAGCAGTCATCTTGTTGATGAGATACAGAAAAGTGGACCAAATCCATCTTCCTAAT
66 TAAATAATAAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGC-AA-
* * * * * * * *
23275353 GAGATACAGA-G-AAGTGGATCACAATAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGT
129 -AGCT-CA-ATGTGAGT-GA-AAC-TTCA-AAATC--CCATCTTCTTGATGAGATACAGAGAAGT
**** * * * * * * * *
23275416 ACACCAAATCAATGAAGCGAAGC-TCAATG-TGAG-T---GA-AACT--TCAAAATCCATC-TTC
185 GGGTCAAAGCAA-GCATC--ATCTTC-CTGATGAGATAAAGAGAAGTAGACCAAATCC-TCTTTC
* * * *
23275471 CTGATGAGATACAGAGAAATAGG-TCAAAGT-AAT-AAAGC-GATCATCTTTCTGATGAGATACA
245 CTAATAAGATACAGAGAAGT-GGATCAAA-TCAATGAAA-CAG-TCATCTTCCTGATGAGATACA
* ** *** * * * *
23275532 GAGAAGTAAACCAAATCCGTCTTCCTGATGAGAT--ATAGAGAAGTAGATTAA-ATCAATGACGC
306 GAGAAGTAGACCAAATCAAT-AAGC--A-AAGCTCAAT-G-TAAGT-GA--AACTTCAA--AC-C
* * * * * ** ** * * * *
23275594 ACTCATCTT-TCTGATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAA--AGCTTA-ATG-T
359 CCCCATCTTCT-TGATAAGATACAAAGAAGTGGGTCAAAGCAATAAAACAATCA-TTTACCTGAT
* ** * * * * *
23275654 GAG-T---GA-AACTTTA--AACTCC-CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCA
422 GAGATAAAGAGAAGTAGACCAAATCCGCCT-TTCCTGATAAGATACAGAGAAGTGGATTAAATCA
*** **
23275711 ATAAAGTGGTTAT
486 ATAAAACAGACAT
* * * ** *
23275724 CTTCCTGATTAGGTACAGAGAAGTGGACCAAATCCTTCTTCCAGATGAGATACAGAGAAGTGGAT
1 CTTCCTGATGAGATACAAAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGAT
*
23275789 TAAATCAATGAAGC-GATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAA
66 TAAAT-AATAAAGCAG-TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAA
* ** * **
23275853 AGCTCAATGTGAGT-AAGGCTTC-AACCCCCATCTTCCTGATGAGATACAGAGAAGTATGTCAAA
129 AGCTCAATGTGAGTGAA-ACTTCAAAATCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAA
* * * * * * * * * * *
23275916 GCAATAAAGCGGTCTTTTTCCTGATGAGATACAGTGAAGTGGACCAAATTCGCCTTCCTGATGAG
193 GC----AAGC-ATCATCTTCCTGATGAGATAAAGAGAAGTAGACCAAATCCTCTTTCCTAATAAG
* *
23275981 ATACAGAGAAGTGGATTAAATCAAT-AAATC-GATCATCTTCTTGATGAGATACAGA-AAGTAGA
253 ATACAGAGAAGTGGATCAAATCAATGAAA-CAG-TCATCTTCCTGATGAGATACAGAGAAGTAGA
* *** * * * ** * * ***
23276043 CCAAATCCATCTTCCAGATGAGATATAAAG-AAGTGGATCAAAATAATGAAGCGGTCATCTT-TC
316 CCAAATCAAT-AAGCA-A--AGCT-CAATGTAAGT-GA--AACTTCA--AACCCCCCATCTTCT-
* * ** ** * *** * *
23276106 TGATAAGATACAGAGAAGTAGACCAAATAAATGAAGTGA--AGTT-CAATG-TGAG-T---GA-A
370 TGATAAGATACAAAGAAGTGGGTCAAAGCAATAAAACAATCATTTAC-CTGATGAGATAAAGAGA
* * * ** * * * * * * ** *
23276162 ACT--TCAAAATCCATC-TTCTTGATGAGATACAAAGAAGTGGGTCAAAGCAAT-AAAGTGTTCA
434 AGTAGACCAAATCCGCCTTTCCTGATAAGATACAGAGAAGTGGATTAAATCAATAAAACAG-ACA
23276223 T
498 T
* * ***
23276224 CTTCCTGATGAGATACATAGAAGTAGACCAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGAT
1 CTTCCTGATGAGATACAAAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGAT
* * * * * **
23276289 TAAATCATTGATGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACTAAATCAATGAAGCTCA
66 TAAAT-AATAAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAA
* * * * *
23276354 GCTCAACGTGAGTGAAACTTCAAACTCTCATC-TCTTCGATGAGATATAGAGAAGTGAGTCAAAG
130 GCTCAATGTGAGTGAAACTTCAAAATCCCATCTTCTT-GATGAGATACAGAGAAGTGGGTCAAAG
* * * * * * * * * *
23276418 TAATAAAACGGTTATCTTCTTGATGAGATACAGAGAAGTGGACCAAAT-CTATCTTCCTGATGAG
194 ----CAAGC-ATCATCTTCCTGATGAGATAAAGAGAAGTAGACCAAATCCTCT-TTCCTAATAAG
**** *
23276482 ATACAGAGAAGTGGATCACAAT-AATGAAGTTTTCATCTTCCTGATGAGATACAGAGAAGTAGGC
253 ATACAGAGAAGTGGATCA-AATCAATGAAACAGTCATCTTCCTGATGAGATACAGAGAAGTAGAC
* *** * *
23276546 CATATCAAATGAAGCAAAG-TCCAATACGAGTGAAACTTCAAA-CCCCTATCTTCTTGATGAGAT
317 CAAATC-AAT-AAGCAAAGCT-CAATGTAAGTGAAACTTCAAACCCCCCATCTTCTTGATAAGAT
* * * * ** * * *
23276609 ACAAAAAAGTGGGTCGAAGTAATAAAGCTGTCATATT-CTTGATGAGATATAGAGAAGTGGACCA
379 ACAAAGAAGTGGGTCAAAGCAATAAAACAATCAT-TTACCTGATGAGATAAAGAGAAGTAGACCA
* ** * * * *
23276673 AATTCATC-TTCCTGATGAGATACAGAGAAGTGGATCACAAT-AATGAAGC-GATCAT
443 AATCCGCCTTTCCTGATAAGATACAGAGAAGTGGATTA-AATCAATAAAACAGA-CAT
** *
23276728 CTTCCTGATGAGATACCGAGAAGTAGACCAAATC
1 CTTCCTGATGAGATACAAAGAAGTGGACCAAATC
23276762 AAATGAAGCA
Statistics
Matches: 1610, Mismatches: 312, Indels: 226
0.75 0.15 0.11
Matches are distributed among these distances:
492 33 0.02
494 40 0.02
495 235 0.15
496 137 0.09
497 16 0.01
498 10 0.01
499 21 0.01
500 187 0.12
501 342 0.21
502 241 0.15
503 66 0.04
504 167 0.10
505 45 0.03
506 3 0.00
507 6 0.00
508 10 0.01
509 8 0.00
510 7 0.00
511 36 0.02
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (498 bp):
CTTCCTGATGAGATACAAAGAAGTGGACCAAATCCACCTTCCTGATGAGATACAGAGAAGTGGAT
TAAATAATAAAGCAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAG
CTCAATGTGAGTGAAACTTCAAAATCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAAAGCA
AGCATCATCTTCCTGATGAGATAAAGAGAAGTAGACCAAATCCTCTTTCCTAATAAGATACAGAG
AAGTGGATCAAATCAATGAAACAGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAAT
AAGCAAAGCTCAATGTAAGTGAAACTTCAAACCCCCCATCTTCTTGATAAGATACAAAGAAGTGG
GTCAAAGCAATAAAACAATCATTTACCTGATGAGATAAAGAGAAGTAGACCAAATCCGCCTTTCC
TGATAAGATACAGAGAAGTGGATTAAATCAATAAAACAGACAT
Found at i:23275331 original size:84 final size:84
Alignment explanation
Indices: 23275093--23275425 Score: 380
Period size: 85 Copynumber: 3.9 Consensus size: 84
23275083 TCCCATCTTT
* * * * * * *
23275093 CTGATAAGATATAGAGAAGTGGGTCAAAGCAATAAGGTGGTCAT-TTACTTGATGAGATACAGAG
1 CTGATGAGATACAGAGAAGTGGATTAAA-TAATAAAGCGGTCATCTT-CTTGATGAGATACAGAG
* *
23275157 AAGTAGACCGAATCCTCCTTTC
64 AAGTAGACCAAATCCACC-TTC
* * * * *
23275179 CTGATAAGATATAGAGAAGTGGATTAAATTAATAAAACGGACATCTTCTTCATGAGATACAGAGA
1 CTGATGAGATACAGAGAAGTGGATTAAA-TAATAAAGCGGTCATCTTCTTGATGAGATACAGAGA
*
23275244 AGTGGACCAAATCCACCTTC
65 AGTAGACCAAATCCACCTTC
* * * * *
23275264 CTGATGAGAGACAGAGAAGTGGATTAAATCATAAAGCAGTCATCTTGTTGATGAGATACAGAAAA
1 CTGATGAGATACAGAGAAGTGGATTAAATAATAAAGCGGTCATCTTCTTGATGAGATACAGAGAA
* *
23275329 GTGGACCAAATCCATCTTC
66 GTAGACCAAATCCACCTTC
* * *
23275348 CTAATGAGATACAGAGAAGTGGATCACAATAATAAAGCGGTCATCTTCCTGATGAGATACAGAGA
1 CTGATGAGATACAGAGAAGTGGATTA-AATAATAAAGCGGTCATCTTCTTGATGAGATACAGAGA
*
23275413 AGTACACCAAATC
65 AGTAGACCAAATC
23275426 AATGAAGCGA
Statistics
Matches: 212, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
84 71 0.33
85 72 0.34
86 67 0.32
87 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (84 bp):
CTGATGAGATACAGAGAAGTGGATTAAATAATAAAGCGGTCATCTTCTTGATGAGATACAGAGAA
GTAGACCAAATCCACCTTC
Found at i:23275434 original size:48 final size:48
Alignment explanation
Indices: 23275341--23275434 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
23275331 GGACCAAATC
** *
23275341 CATCTTCCTAATGAGATACAGAGAAGTGGATCACAATAATAAAGCGGT
1 CATCTTCCTAATGAGATACAGAGAAGTACACCACAATAATAAAGCGGT
* *
23275389 CATCTTCCTGATGAGATACAGAGAAGTACACCA-AATCAATGAAGCG
1 CATCTTCCTAATGAGATACAGAGAAGTACACCACAAT-AATAAAGCG
23275435 AAGCTCAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.08
48 37 0.93
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.21
Consensus pattern (48 bp):
CATCTTCCTAATGAGATACAGAGAAGTACACCACAATAATAAAGCGGT
Found at i:23275565 original size:208 final size:208
Alignment explanation
Indices: 23275252--23276049 Score: 1040
Period size: 208 Copynumber: 3.8 Consensus size: 208
23275242 GAAGTGGACC
* * * *
23275252 AAATCCACCTTCCTGATGAGAGACAGAGAAGTGGATTAAATC-ATAAAGC-AGTCATCTTGT-TG
1 AAATCCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGA-TCATCTT-TCTG
* * * *
23275314 ATGAGATACAGAAAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGGATCACAAT-
64 ATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTA-AATC
* * *
23275378 AATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAAATCAATGAAGCGAAGCTCAA
128 AATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAA
23275443 TGTGAGTGAAACTTCA
193 TGTGAGTGAAACTTCA
* *
23275459 AAATCCATCTTCCTGATGAGATACAGAGAAATAGG-TCAAAGTAATAAAGCGATCATCTTTCTGA
1 AAATCCATCTTCCTGATGAGATACAGAGAAGT-GGATCAAAGCAATAAAGCGATCATCTTTCTGA
** * *
23275523 TGAGATACAGAGAAGTAAACCAAATCCGTCTTCCTGATGAGATATAGAGAAGTAGATTAAATCAA
65 TGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAATCAA
* * * * *
23275588 TGACGC-ACTCATCTTTCTGATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTTAAT
130 TAAAGCGA-TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAAT
*
23275652 GTGAGTGAAACTTTA
194 GTGAGTGAAACTTCA
* * * * *
23275667 AACTCCCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGTGGTTATCTTCCTGA
1 AAAT-CCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTTCTGA
* * * *
23275732 TTAGGTACAGAGAAGTGGACCAAATCCTTCTTCCAGATGAGATACAGAGAAGTGGATTAAATCAA
65 TGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAATCAA
*
23275797 TGAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATG
130 TAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATG
*
23275862 TGAGT-AAGGCTTCA
195 TGAGTGAA-ACTTCA
*** * * *
23275876 ACCCCCATCTTCCTGATGAGATACAGAGAAGTATG-TCAAAGCAATAAAGCGGTC-TTTTTCCTG
1 AAATCCATCTTCCTGATGAGATACAGAGAAGT-GGATCAAAGCAATAAAGCGATCATCTTT-CTG
* * *
23275939 ATGAGATACAGTGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
64 ATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
* *
23276004 ATAAATCGATCATCTTCTTGATGAGATACAGA-AAGTAGACCAAATC
129 ATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATC
23276050 CATCTTCCAG
Statistics
Matches: 518, Mismatches: 61, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
207 54 0.10
208 283 0.55
209 180 0.35
210 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (208 bp):
AAATCCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTTCTGAT
GAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAATCAAT
AAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGT
GAGTGAAACTTCA
Found at i:23275572 original size:85 final size:85
Alignment explanation
Indices: 23275459--23275632 Score: 244
Period size: 85 Copynumber: 2.0 Consensus size: 85
23275449 TGAAACTTCA
*
23275459 AAATCCATCTTCCTGATGAGATACAGAGAAATAGGTCAAAGT-AATAAAGCGA-TCATCTTTCTG
1 AAATCCATCTTCCTGATGAGATACAGAGAAATAGATCAAA-TCAATAAAGC-ACTCATCTTTCTG
23275522 ATGAGATACAGAGAAGTAAACC
64 ATGAGATACAGAGAAGTAAACC
* * * * * *
23275544 AAATCCGTCTTCCTGATGAGATATAGAGAAGTAGATTAAATCAATGACGCACTCATCTTTCTGAT
1 AAATCCATCTTCCTGATGAGATACAGAGAAATAGATCAAATCAATAAAGCACTCATCTTTCTGAT
*
23275609 GAGATACAGAGAAGTAGACC
66 GAGATACAGAGAAGTAAACC
23275629 AAAT
1 AAAT
23275633 AAATGAAGCA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
84 2 0.03
85 77 0.97
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.25
Consensus pattern (85 bp):
AAATCCATCTTCCTGATGAGATACAGAGAAATAGATCAAATCAATAAAGCACTCATCTTTCTGAT
GAGATACAGAGAAGTAAACC
Found at i:23275782 original size:417 final size:415
Alignment explanation
Indices: 23275260--23276048 Score: 1142
Period size: 417 Copynumber: 1.9 Consensus size: 415
23275250 CCAAATCCAC
* * **
23275260 CTTCCTGATGAGAGACAGAGAAGTGGATTAAATCATAAAGCAGTCATCTTGTTGATGAGATACAG
1 CTTCCTGATGAGAGACAGAGAAGTGGATCAAAGCATAAAGCAGTCATCTTCCTGATGAGATACAG
*
23275325 AAAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGGATCACAAT-AATAAAGCGGT
66 AAAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGGATCA-AATCAATAAAGCGAT
*
23275389 CATCTTCCTGATGAGATACAGAGAAGTACACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAA-
130 CATCTTCCTGATGAGATACAGAGAAGTACACCAAATCAATGAAGCAAAGCTCAATGTGAGT-AAG
* *
23275453 ACTTCAAAATCCATCTTCCTGATGAGATACAGAGAAATAGGTCAAAGTAATAAAGCGATCATCTT
194 ACTTCAAAACCCATCTTCCTGATGAGATACAGAGAAATAGGTCAAAGCAATAAAGCGATC-TCTT
* *
23275518 T-CTGATGAGATACAGAGAAGTAAACCAAATCCGTCTTCCTGATGAGATATAGAGAAGTAGATTA
258 TCCTGATGAGATACAGAGAAGTAAACCAAATCCGCCTTCCTGATGAGATACAGAGAAGTAGATTA
*
23275582 AATCAAT-GA-CGCACTCATCTT-TCTGATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAA
323 AATCAATAAATCG-A-TCATCTTCT-TGATGAGATACAGA-AAGTAGACCAAATAAATGAAGCAA
23275644 AGCTTAATGTGAGTGAAACTTTAAACTCCCAT
384 AGCTTAATGTGAGTGAAACTTTAAACTCCCAT
* ** * * *
23275676 CTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGTGGTTATCTTCCTGATTAGGTACA
1 CTTCCTGATGAGAGACAGAGAAGTGGATCAAAGC-ATAAAGCAGTCATCTTCCTGATGAGATACA
* * * *
23275741 GAGAAGTGGACCAAATCCTTCTTCC-AGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGA
65 GAAAAGTGGACCAAATCCATCTTCCTA-ATGAGATACAGAGAAGTGGATCAAATCAATAAAGCGA
*
23275805 TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAG
129 TCATCTTCCTGATGAGATACAGAGAAGTACACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAG
* ** * * * *
23275870 GCTTCAACCCCCATCTTCCTGATGAGATACAGAGAAGTATGTCAAAGCAATAAAGCGGTCTTTTT
194 ACTTCAAAACCCATCTTCCTGATGAGATACAGAGAAATAGGTCAAAGCAATAAAGCGATCTCTTT
* ** * *
23275935 CCTGATGAGATACAGTGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTAA
259 CCTGATGAGATACAGAGAAGTAAACCAAATCCGCCTTCCTGATGAGATACAGAGAAGTAGATTAA
23276000 ATCAATAAATCGATCATCTTCTTGATGAGATACAGAAAGTAGACCAAAT
324 ATCAATAAATCGATCATCTTCTTGATGAGATACAGAAAGTAGACCAAAT
23276049 CCATCTTCCA
Statistics
Matches: 331, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
416 54 0.16
417 272 0.82
418 3 0.01
419 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (415 bp):
CTTCCTGATGAGAGACAGAGAAGTGGATCAAAGCATAAAGCAGTCATCTTCCTGATGAGATACAG
AAAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGGATCAAATCAATAAAGCGATC
ATCTTCCTGATGAGATACAGAGAAGTACACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAGAC
TTCAAAACCCATCTTCCTGATGAGATACAGAGAAATAGGTCAAAGCAATAAAGCGATCTCTTTCC
TGATGAGATACAGAGAAGTAAACCAAATCCGCCTTCCTGATGAGATACAGAGAAGTAGATTAAAT
CAATAAATCGATCATCTTCTTGATGAGATACAGAAAGTAGACCAAATAAATGAAGCAAAGCTTAA
TGTGAGTGAAACTTTAAACTCCCAT
Found at i:23275826 original size:85 final size:85
Alignment explanation
Indices: 23275675--23275842 Score: 246
Period size: 85 Copynumber: 2.0 Consensus size: 85
23275665 TAAACTCCCA
* * * * * *
23275675 TCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGTGGTTATCTTCCTGATTAGGTAC
1 TCTTCCAGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATAC
*
23275740 AGAGAAGTGGACCAAATCCT
66 AGAGAAGTAGACCAAATCCT
* * *
23275760 TCTTCCAGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGATCATCTTCCTGATGAGATAC
1 TCTTCCAGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATAC
23275825 AGAGAAGTAGACCAAATC
66 AGAGAAGTAGACCAAATC
23275843 AATGAAGCAA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (85 bp):
TCTTCCAGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATAC
AGAGAAGTAGACCAAATCCT
Found at i:23275996 original size:709 final size:711
Alignment explanation
Indices: 23275230--23276761 Score: 2168
Period size: 709 Copynumber: 2.2 Consensus size: 711
23275220 CATCTTCTTC
* *
23275230 ATGAGATACAGAGAAGTGGACCAAATCCACCTTCCTGATGAGAGACAGAGAAGTGGATTAAATCA
1 ATGAGATACAGAGAAGTGGACCAAATTCACCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
* *
23275295 TAAAGC-AGTCATCTTGTTGATGAGATACAGAAAAGTGGACCAAATCCATCTTCCTA-ATGAGAT
66 TAAAGCGA-TCATCTTCTTGATGAGATACAGAAAAGTAGACCAAATCCATCTTCC-AGATGAGAT
* * *
23275358 ACAGAGAAGTGGATCACAATAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAA
129 ACAAAGAAGTGGATCAAAATAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTACACCAA
* *
23275423 ATCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAAATCCATCTTCCTGATGAGATACAGAGA
194 ATAAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAAATCCATCTTCCTGATGAGATACAAAGA
* *
23275488 AATAGGTCAAAGTAATAAAGCGATCATCTTTCTGATGAGATACAGAGAAGTAAACCAAATCCGTC
259 AATAGGTCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATCCGTC
* *
23275553 TTCCTGATGAGATATAGAGAAGTAGATTAAATCAATGACGCACTCATCTTTCTGATGAGATACAG
324 TTCCTGATGAGATACAGAGAAGTAGATTAAATCAATGACGCACTCATCTTCCTGATGAGATACAG
* * *
23275618 AGAAGTAGACCAAATAAATGAAGCAAAGCTTAATGTGAGTGAAACTTTAAACTCCCATCTTCCT-
389 AGAAGTAGACCAAATAAATGAAGCAAAGCTCAACGTGAGTGAAACTTCAAACTCCCATC-TCCTC
** * *
23275682 GATGAGATACAGAGAAGTG-GATCAAAGCAATAAAGTGGTTATCTTCCTGATTAGGTACAGAGAA
453 GATGAGATACAGAGAAGTGAG-TCAAAGCAATAAAACGGTTATCTTCCTGATGAGATACAGAGAA
*
23275746 GTGGACCAAATCCT-TCTTCCAGATGAGATACAGAGAAGTGGATTA-AATCAATGAAGCGATCAT
517 GTGGACCAAAT-CTATCTTCCAGATGAGATACAGAGAAGTGGATCACAAT-AATGAAGCGATCAT
** *
23275809 CTTCCTGATGAGATACAGAGAAGTAGACCAAATC-AATGAAGCAAAG-CTCAATGTGAGT-AAGG
580 CTTCCTGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGTC-CAATACGAGTGAA-A
* * * * *
23275871 CTTC-AACCCCCATCTTCCTGATGAGATACAGAGAAGTATGTCAAAGCAATAAAGCGGTCTTTTT
643 CTTCAAACCCCCATCTTCCTGATGAGATACAAAAAAGTAGGTCAAAGCAATAAAGCGGTCATATT
23275935 CCTG
708 CCTG
* *
23275939 ATGAGATACAGTGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
1 ATGAGATACAGAGAAGTGGACCAAATTCACCTTCCTGATGAGATACAGAGAAGTGGATTAAATC-
*
23276004 ATAAATCGATCATCTTCTTGATGAGATACAG-AAAGTAGACCAAATCCATCTTCCAGATGAGATA
65 ATAAAGCGATCATCTTCTTGATGAGATACAGAAAAGTAGACCAAATCCATCTTCCAGATGAGATA
* * * *
23276068 TAAAGAAGTGGATCAAAATAATGAAGCGGTCATCTTTCTGATAAGATACAGAGAAGTAGACCAAA
130 CAAAGAAGTGGATCAAAATAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTACACCAAA
* * *
23276133 TAAATGAAGTGAAGTTCAATGTGAGTGAAACTTCAAAATCCATCTTCTTGATGAGATACAAAGAA
195 TAAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAAATCCATCTTCCTGATGAGATACAAAGAA
* * * * * * *
23276198 GTGGGTCAAAGCAATAAAGTGTTCATCTTCCTGATGAGATACATAGAAGTAGACCAAATCTGTCT
260 ATAGGTCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATCCGTCT
* * * **
23276263 TCCTGATGAGATACAGAGAAGTGGATTAAATCATTGATGCGGTCATCTTCCTGATGAGATACAGA
325 TCCTGATGAGATACAGAGAAGTAGATTAAATCAATGACGCACTCATCTTCCTGATGAGATACAGA
* * ** * *
23276328 GAAGTAGACTAAATCAATGAAGCTCAGCTCAACGTGAGTGAAACTTCAAACTCTCATCTCTTCGA
390 GAAGTAGACCAAATAAATGAAGCAAAGCTCAACGTGAGTGAAACTTCAAACTCCCATCTCCTCGA
* * *
23276393 TGAGATATAGAGAAGTGAGTCAAAGTAATAAAACGGTTATCTTCTTGATGAGATACAGAGAAGTG
455 TGAGATACAGAGAAGTGAGTCAAAGCAATAAAACGGTTATCTTCCTGATGAGATACAGAGAAGTG
* ***
23276458 GACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATCACAATAATGAAGTTTTCATCTTCC
520 GACCAAATCTATCTTCCAGATGAGATACAGAGAAGTGGATCACAATAATGAAGCGATCATCTTCC
* *
23276523 TGATGAGATACAGAGAAGTAGGCCATATCAAATGAAGCAAAGTCCAATACGAGTGAAACTTCAAA
585 TGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGTCCAATACGAGTGAAACTTCAAA
* * * * * * *
23276588 CCCCTATCTTCTTGATGAGATACAAAAAAGTGGGTCGAAGTAATAAAGCTGTCATATTCTTG
650 CCCCCATCTTCCTGATGAGATACAAAAAAGTAGGTCAAAGCAATAAAGCGGTCATATTCCTG
* * * *
23276650 ATGAGATATAGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGTGGATCACAATA
1 ATGAGATACAGAGAAGTGGACCAAATTCACCTTCCTGATGAGATACAGAGAAGTGGATTA-AATC
* * * *
23276715 ATGAAGCGATCATCTTCCTGATGAGATACCGAGAAGTAGACCAAATC
65 ATAAAGCGATCATCTTCTTGATGAGATACAGAAAAGTAGACCAAATC
23276762 AAATGAAGCA
Statistics
Matches: 726, Mismatches: 84, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
708 6 0.01
709 510 0.70
710 55 0.08
711 138 0.19
712 17 0.02
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (711 bp):
ATGAGATACAGAGAAGTGGACCAAATTCACCTTCCTGATGAGATACAGAGAAGTGGATTAAATCA
TAAAGCGATCATCTTCTTGATGAGATACAGAAAAGTAGACCAAATCCATCTTCCAGATGAGATAC
AAAGAAGTGGATCAAAATAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTACACCAAAT
AAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAAATCCATCTTCCTGATGAGATACAAAGAAA
TAGGTCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATCCGTCTT
CCTGATGAGATACAGAGAAGTAGATTAAATCAATGACGCACTCATCTTCCTGATGAGATACAGAG
AAGTAGACCAAATAAATGAAGCAAAGCTCAACGTGAGTGAAACTTCAAACTCCCATCTCCTCGAT
GAGATACAGAGAAGTGAGTCAAAGCAATAAAACGGTTATCTTCCTGATGAGATACAGAGAAGTGG
ACCAAATCTATCTTCCAGATGAGATACAGAGAAGTGGATCACAATAATGAAGCGATCATCTTCCT
GATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGTCCAATACGAGTGAAACTTCAAAC
CCCCATCTTCCTGATGAGATACAAAAAAGTAGGTCAAAGCAATAAAGCGGTCATATTCCTG
Found at i:23276027 original size:85 final size:85
Alignment explanation
Indices: 23275884--23276133 Score: 267
Period size: 85 Copynumber: 3.0 Consensus size: 85
23275874 CAACCCCCAT
* * * * *
23275884 CTTCCTGATGAGATACAGAGAAGT--ATGTCAAAGCAATAAAGCGGTCTTTTTCCTGATGAGATA
1 CTTCCTGATGAGATACAGAGAAGTGGATCT-AAATCAATAAAGCGGTCATCTTCTTGATGAGATA
* * *
23275947 CAGTGAAGTGGACCAAATTCGC
65 CAG-GAAGTAGACCAAATCCAC
* *
23275969 CTTCCTGATGAGATACAGAGAAGTGGAT-TAAATCAATAAATCGATCATCTTCTTGATGAGATAC
1 CTTCCTGATGAGATACAGAGAAGTGGATCTAAATCAATAAAGCGGTCATCTTCTTGATGAGATAC
* *
23276033 AGAAAGTAGACCAAATCCAT
66 AGGAAGTAGACCAAATCCAC
* * * * * *
23276053 CTTCCAGATGAGATATAAAGAAGTGGATCAAAAT-AATGAAGCGGTCATCTT-TCTGATAAGATA
1 CTTCCTGATGAGATACAGAGAAGTGGATCTAAATCAATAAAGCGGTCATCTTCT-TGATGAGATA
23276116 CAGAGAAGTAGACCAAAT
65 CAG-GAAGTAGACCAAAT
23276134 AAATGAAGTG
Statistics
Matches: 140, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.01
84 64 0.46
85 72 0.51
86 1 0.01
87 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (85 bp):
CTTCCTGATGAGATACAGAGAAGTGGATCTAAATCAATAAAGCGGTCATCTTCTTGATGAGATAC
AGGAAGTAGACCAAATCCAC
Found at i:23276311 original size:85 final size:85
Alignment explanation
Indices: 23276175--23276342 Score: 228
Period size: 85 Copynumber: 2.0 Consensus size: 85
23276165 TCAAAATCCA
* * * *
23276175 TCTTCTTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGTGTTCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
*
23276240 ATAGAAGTAGACCAAATCTG
66 AGAGAAGTAGACCAAATCTG
* * * * * *
23276260 TCTTCCTGATGAGATACAGAGAAGTGGATTAAATCATTGATGCGGTCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
*
23276325 AGAGAAGTAGACTAAATC
66 AGAGAAGTAGACCAAATC
23276343 AATGAAGCTC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
AGAGAAGTAGACCAAATCTG
Found at i:23276320 original size:292 final size:293
Alignment explanation
Indices: 23275675--23276342 Score: 898
Period size: 292 Copynumber: 2.3 Consensus size: 293
23275665 TAAACTCCCA
* * * * * * * *
23275675 TCTTCCTGATGAGATACAGAGAAGTGGATCAAAGCAATAAAGTGGTTATCTTCCTGATTAGGTAC
1 TCTTCCTGATGAGATACAGAGAAGTGGATTAAATCATTAATGCGGTCATCTTCCTGATGAGATAC
* * * *
23275740 AGAGAAGTGGACCAAATCCTTCTTCCAGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGA
66 AGAGAAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGATAAAATCAATGAAGCGA
* *
23275805 TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAG
131 TCATCTTCCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTGAGTAAG
* ** * * * *
23275870 GCTTCAACCCCCATCTTCCTGATGAGATACAGAGAAGTATGTCAAAGCAATAAAGCGGTCTTTTT
196 ACTTCAAAACCCATCTTCCTGATGAGATACAAAGAAGTAGGTCAAAGCAATAAAGCGGTCATCTT
*
23275935 CCTGATGAGATACAGTGAAGTGGACCAAATTCG
261 CCTGATGAGATACAGTGAAGTAGACCAAATTCG
* * * *
23275968 CCTTCCTGATGAGATACAGAGAAGTGGATTAAATCAATAAAT-CGATCATCTTCTTGATGAGATA
1 TCTTCCTGATGAGATACAGAGAAGTGGATTAAATC-ATTAATGCGGTCATCTTCCTGATGAGATA
*
23276032 CAGA-AAGTAGACCAAATCCATCTTCCAGATGAGATATAAAGAAGTGGATCAAAAT-AATGAAGC
65 CAGAGAAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGAT-AAAATCAATGAAGC
* * ** *
23276095 GGTCATCTTTCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGTGAAGTTCAATGTGAGTG
129 GATCATCTTCCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTGAGT-
* * * * *
23276160 AA-ACTTCAAAATCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGTGTTCAT
193 AAGACTTCAAAACCCATCTTCCTGATGAGATACAAAGAAGTAGGTCAAAGCAATAAAGCGGTCAT
23276224 CTTCCTGATGAGATACA-TAGAAGTAGACCAAA-TCTG
258 CTTCCTGATGAGATACAGT-GAAGTAGACCAAATTC-G
*
23276260 TCTTCCTGATGAGATACAGAGAAGTGGATTAAATCATTGATGCGGTCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAGAGAAGTGGATTAAATCATTAATGCGGTCATCTTCCTGATGAGATAC
*
23276325 AGAGAAGTAGACTAAATC
66 AGAGAAGTAGACCAAATC
23276343 AATGAAGCTC
Statistics
Matches: 325, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
291 7 0.02
292 244 0.75
293 71 0.22
294 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (293 bp):
TCTTCCTGATGAGATACAGAGAAGTGGATTAAATCATTAATGCGGTCATCTTCCTGATGAGATAC
AGAGAAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGATAAAATCAATGAAGCGA
TCATCTTCCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTGAGTAAG
ACTTCAAAACCCATCTTCCTGATGAGATACAAAGAAGTAGGTCAAAGCAATAAAGCGGTCATCTT
CCTGATGAGATACAGTGAAGTAGACCAAATTCG
Found at i:23276737 original size:85 final size:85
Alignment explanation
Indices: 23276593--23276760 Score: 205
Period size: 85 Copynumber: 2.0 Consensus size: 85
23276583 TCAAACCCCT
* * * *
23276593 ATCTTCTTGATGAGATACAAAAAAGTGGGTCGAAGTAATAAAGCTGTCATATTCTTGATGAGATA
1 ATCTTCCTGATGAGATACAAAAAAGTGGATCGAAATAATAAAGCTGTCATATTCCTGATGAGATA
* *
23276658 TAGAGAAGTGGACCAAATTC
66 CAGAGAAGTAGACCAAATTC
* * * *
23276678 ATCTTCCTGATGAGATACAGAGAAGTGGATC-ACAATAATGAAGC-GATCATCTTCCTGATGAGA
1 ATCTTCCTGATGAGATACAAAAAAGTGGATCGA-AATAATAAAGCTG-TCATATTCCTGATGAGA
*
23276741 TACCGAGAAGTAGACCAAAT
64 TACAGAGAAGTAGACCAAAT
23276761 CAAATGAAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 2 0.03
85 68 0.97
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (85 bp):
ATCTTCCTGATGAGATACAAAAAAGTGGATCGAAATAATAAAGCTGTCATATTCCTGATGAGATA
CAGAGAAGTAGACCAAATTC
Found at i:23276751 original size:419 final size:415
Alignment explanation
Indices: 23275970--23276882 Score: 1194
Period size: 419 Copynumber: 2.2 Consensus size: 415
23275960 CAAATTCGCC
* * *
23275970 TTCCTGATGAGATACAGAGAAGTGGATTAAA-TCAATAAATCGATCATCTTCTTGATGAGATACA
1 TTCCTGATGAGATACAGAGAAGTGG-TCAAAGT-AATAAAACGGTCATCTTCTTGATGAGATACA
*
23276034 GAAAGTAGACCAAATCCATCTTCCAGATGAGATATAAAGAAGTGGATCAAAATAATGAAGCGGTC
64 GAAAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGATCAAAATAATGAAGCGGTC
* ** * **
23276099 ATCTTTCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGTGAAGTTCAATGTGAGTGAAAC
129 ATCTTCCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGTCCAATACGAGTGAAAC
* * *
23276164 TTCAAAATCCATCTTCTTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGTGTTCATCTTCC
194 TTCAAAACCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGTTCATATTCC
* * *
23276229 TGATGAGATACATAGAAGTAGACCAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAT
259 TGATGAGATACAGAGAAGTAGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATCAAAT
* * * * **
23276294 CATTGATGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACTAAATC-AATGAAGCTCAGCTC
324 CAATGAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTC
23276358 AACG-TGAGTGAAACTTCAAACTCTCATCT
389 AACGCT-AGTGAAAC-TCAAACTCTCAT-T
* *
23276387 CTT-C-GATGAGATATAGAGAAGTGAGTCAAAGTAATAAAACGGTTATCTTCTTGATGAGATACA
1 -TTCCTGATGAGATACAGAGAAGTG-GTCAAAGTAATAAAACGGTCATCTTCTTGATGAGATACA
* * * * * ***
23276450 GAGAAGTGGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATCACAATAATGAAGTTTT
64 GA-AAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGATCAAAATAATGAAGCGGT
* * *
23276515 CATCTTCCTGATGAGATACAGAGAAGTAGGCCATATCAAATGAAGCAAAGTCCAATACGAGTGAA
128 CATCTTCCTGATAAGATACAGAGAAGTAGACCAAAT-AAATGAAGCAAAGTCCAATACGAGTGAA
* * *
23276580 ACTTCAAACCCCTATCTTCTTGATGAGATACAAAAAAGTGGGTCGAAGTAATAAAGCTG-TCATA
192 ACTTCAAAACCC-ATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAG-TGTTCATA
* * *
23276644 TTCTTGATGAGATATAGAGAAGTGGACCAAAT-TCATCTTCCTGATGAGATACAGAGAAGTGGAT
255 TTCCTGATGAGATACAGAGAAGTAGACCAAATCT-ATCTTCCTGATGAGATACAGAGAAGTGGAT
*
23276708 CACAAT-AATGAAGCGATCATCTTCCTGATGAGATACCGAGAAGTAGACCAAATCAAATGAAGCA
319 CA-AATCAATGAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCA
* * * *
23276772 AAGTTCAATGCTAGTGAAGCTCAAACTCTTATT
383 AAGCTCAACGCTAGTGAAACTCAAACTCTCATT
* * *
23276805 TTCCTGATGAGATACAGAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGATGAGATATAG
1 TTCCTGATGAGATACAGAGAAGT-GGTCAAAGTAATAAAACGGTCATCTTCTTGATGAGATACAG
23276870 AAAAGTAGACCAA
65 -AAAGTAGACCAA
23276883 GAGATGAAGC
Statistics
Matches: 429, Mismatches: 52, Indels: 27
0.84 0.10 0.05
Matches are distributed among these distances:
416 52 0.12
417 90 0.21
418 38 0.09
419 219 0.51
420 29 0.07
421 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (415 bp):
TTCCTGATGAGATACAGAGAAGTGGTCAAAGTAATAAAACGGTCATCTTCTTGATGAGATACAGA
AAGTAGACCAAATCCATCTTCCAGATGAGATACAAAGAAGTGGATCAAAATAATGAAGCGGTCAT
CTTCCTGATAAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGTCCAATACGAGTGAAACTT
CAAAACCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGTTCATATTCCTG
ATGAGATACAGAGAAGTAGACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATCAAATCA
ATGAAGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAA
CGCTAGTGAAACTCAAACTCTCATT
Found at i:23277562 original size:66 final size:68
Alignment explanation
Indices: 23277459--23277604 Score: 158
Period size: 66 Copynumber: 2.2 Consensus size: 68
23277449 TACTAACACT
* * * *
23277459 TATATATATACATATACCTAACATCTATTTATATTTTTGTTTATTTATTTTTTAT-ATTTC-GAC
1 TATATATATACATATACCTAACATCTATATATATTTTTATAT-TTTATTTTTT-TCAATTCAGAC
23277522 ATATA
64 ATATA
* * * *
23277527 TATATATATATATATA-CTGACATAC-ATATAT-TTTTTATATTTTATTTTTTTCAATTCATACC
1 TATATATATACATATACCTAACAT-CTATATATATTTTTATATTTTATTTTTTTCAATTCAGACA
23277589 TATA
65 TATA
23277593 TATATATATACA
1 TATATATATACA
23277605 CACATGTATA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
64 1 0.02
65 14 0.21
66 24 0.36
67 11 0.17
68 16 0.24
ACGTcount: A:0.35, C:0.10, G:0.02, T:0.53
Consensus pattern (68 bp):
TATATATATACATATACCTAACATCTATATATATTTTTATATTTTATTTTTTTCAATTCAGACAT
ATA
Found at i:23277771 original size:25 final size:24
Alignment explanation
Indices: 23277725--23277771 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
23277715 TAAAAACCCT
* *
23277725 AAAAATAAAATAAGTTTCTTTCGA
1 AAAAATAAAAAAAATTTCTTTCGA
*
23277749 AAAAATAAAAAAATATTTTTTTC
1 AAAAATAAAAAAA-ATTTCTTTC
23277772 AAGTCTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.36
Consensus pattern (24 bp):
AAAAATAAAAAAAATTTCTTTCGA
Found at i:23278285 original size:29 final size:29
Alignment explanation
Indices: 23278213--23278353 Score: 169
Period size: 29 Copynumber: 4.8 Consensus size: 29
23278203 AAAAATCCCC
*
23278213 AAACTTTTCCAAAATTACATTTTAACCTCC
1 AAACTTTTCCAAAATTACATTTTAACC-CT
* * *
23278243 AAACTCTTACAAAATTACATTTTGACTCCT
1 AAACTTTTCCAAAATTACATTTTAAC-CCT
* *
23278273 -AACTTTTCTAAAATTACATTTTGACCCTT
1 AAACTTTTCCAAAATTACATTTTAACCC-T
*
23278302 AAAC-TTTCCAAAATTATATTTTAACCCT
1 AAACTTTTCCAAAATTACATTTTAACCCT
*
23278330 AAACTTTTCTAAAATTACATTTTA
1 AAACTTTTCCAAAATTACATTTTA
23278354 CCTTAAAATT
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.07
29 60 0.63
30 27 0.28
31 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.01, T:0.40
Consensus pattern (29 bp):
AAACTTTTCCAAAATTACATTTTAACCCT
Found at i:23278339 original size:58 final size:58
Alignment explanation
Indices: 23278213--23278360 Score: 194
Period size: 58 Copynumber: 2.5 Consensus size: 58
23278203 AAAAATCCCC
* * *
23278213 AAACTTTTCCAAAATTACATTTTAACCTCCAAACTCTTACAAAATTACATTTTGACTCCT
1 AAACTTTTCTAAAATTACATTTT-ACCT-TAAACTCTTACAAAATTACATTTTAACTCCT
* *
23278273 -AACTTTTCTAAAATTACATTTTGACCCTTAAACT-TTCCAAAATTATATTTTAAC-CCT
1 AAACTTTTCTAAAATTACATTTT-A-CCTTAAACTCTTACAAAATTACATTTTAACTCCT
23278330 AAACTTTTCTAAAATTACATTTTACCTTAAA
1 AAACTTTTCTAAAATTACATTTTACCTTAAA
23278361 ATTCTTAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
56 7 0.09
57 4 0.05
58 39 0.49
59 27 0.34
60 3 0.04
ACGTcount: A:0.37, C:0.22, G:0.01, T:0.40
Consensus pattern (58 bp):
AAACTTTTCTAAAATTACATTTTACCTTAAACTCTTACAAAATTACATTTTAACTCCT
Found at i:23281883 original size:18 final size:18
Alignment explanation
Indices: 23281850--23281884 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23281840 TTACATCTTG
**
23281850 ATCAGATGCAGTCACATA
1 ATCAGATGCAACCACATA
23281868 ATCAGATGCAACCACAT
1 ATCAGATGCAACCACAT
23281885 GCTCAAATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.20
Consensus pattern (18 bp):
ATCAGATGCAACCACATA
Found at i:23285786 original size:36 final size:36
Alignment explanation
Indices: 23285739--23285809 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
23285729 GATGTCACCG
*
23285739 TATCAACTGGTTTTTGGTAAATCTTATCATTTGCCA
1 TATCAACTGGTTTTTGGTAAATCCTATCATTTGCCA
23285775 TATCAACTGGTTTTTGGTAAATCCTATCATTTGCC
1 TATCAACTGGTTTTTGGTAAATCCTATCATTTGCC
23285810 TGTAGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (36 bp):
TATCAACTGGTTTTTGGTAAATCCTATCATTTGCCA
Found at i:23288078 original size:14 final size:14
Alignment explanation
Indices: 23288045--23288082 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
23288035 GGGTGTTGAG
*
23288045 GAAAAAG-AGAAGA
1 GAAAAAGAAGAAAA
23288058 G-AAAAGAAGAAAA
1 GAAAAAGAAGAAAA
23288071 GAAAAAGAAGAA
1 GAAAAAGAAGAA
23288083 TTTTTATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 5 0.23
13 7 0.32
14 10 0.45
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
GAAAAAGAAGAAAA
Found at i:23289237 original size:31 final size:31
Alignment explanation
Indices: 23289199--23289261 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
23289189 TTCAAATGGA
23289199 CTAAGAGTGGCTCTTCAAATCTAATTGGTTT
1 CTAAGAGTGGCTCTTCAAATCTAATTGGTTT
23289230 CTAAGAGTGGCTCTTCAAATCTAATTGGTTT
1 CTAAGAGTGGCTCTTCAAATCTAATTGGTTT
23289261 C
1 C
23289262 AAGCACTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38
Consensus pattern (31 bp):
CTAAGAGTGGCTCTTCAAATCTAATTGGTTT
Found at i:23292417 original size:18 final size:17
Alignment explanation
Indices: 23292375--23292418 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
23292365 GGAACATGAT
*
23292375 GAGGAGGAAGATGAAGG
1 GAGGAGGAAAATGAAGG
*
23292392 GGGAGAGGAAAATGAAGAG
1 GAG-GAGGAAAATGAAG-G
23292411 GAGGAGGA
1 GAGGAGGA
23292419 TGAGATGGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.43, C:0.00, G:0.52, T:0.05
Consensus pattern (17 bp):
GAGGAGGAAAATGAAGG
Found at i:23292788 original size:11 final size:11
Alignment explanation
Indices: 23292772--23292797 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23292762 AATTATTGCA
23292772 TTTTTCTTTAT
1 TTTTTCTTTAT
23292783 TTTTTCTTTAT
1 TTTTTCTTTAT
23292794 TTTT
1 TTTT
23292798 AAGTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTAT
Found at i:23292797 original size:21 final size:21
Alignment explanation
Indices: 23292771--23292829 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
23292761 AAATTATTGC
*
23292771 ATTTTTCTTTATTTTTTCTTT
1 ATTTTTCTTTATTTTTGCTTT
***
23292792 ATTTTTAAGTATTTTTGCTTT
1 ATTTTTCTTTATTTTTGCTTT
*
23292813 GTTTTTGCTTT-TTTTTG
1 ATTTTT-CTTTATTTTTG
23292830 TGTGCTTGAG
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.10, C:0.07, G:0.08, T:0.75
Consensus pattern (21 bp):
ATTTTTCTTTATTTTTGCTTT
Found at i:23293798 original size:3 final size:3
Alignment explanation
Indices: 23293790--23293823 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
23293780 AAGGGTTCAA
23293790 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
23293824 GGGTTTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:23294525 original size:21 final size:20
Alignment explanation
Indices: 23294499--23294545 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
23294489 TTTTTAGTCA
23294499 TTTTAAAGAAAAATTTTAATT
1 TTTTAAA-AAAAATTTTAATT
* * *
23294520 TTTTAAACAAAGTTTTGATT
1 TTTTAAAAAAAATTTTAATT
23294540 TTTTAA
1 TTTTAA
23294546 CTATTTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.51
Consensus pattern (20 bp):
TTTTAAAAAAAATTTTAATT
Found at i:23294725 original size:149 final size:147
Alignment explanation
Indices: 23294229--23294738 Score: 599
Period size: 148 Copynumber: 3.4 Consensus size: 147
23294219 AATATTGAGA
* * * * ** * *
23294229 AAAGTTTTGATTTTTTTAACAATTTCGAAATAAAAATTTTTGAATTTTAAAAAAAATAGTGTTTT
1 AAAGTTTTGATATTTTTAACTATTTCGAAAT-AAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
** ** * *
23294294 TCT-TTAAAAAAGAAAGTTTATATTTTT-AAAAGTAAAAAATGTGTTTTTTATTCATTTTAAAGA
65 GATAAAAAAAAAGAAAGTTTAGATTTTTAAAAAGTAAAAAAT-TGTTTTTTAGTCATTTTAAAGA
23294357 AAAAGTTTAAATTTTTAAAC
129 AAAAGTTT-AATTTTTAAAC
*
23294377 AAAGTTTTGATTTATTTTTAACTATTTCGAAATAAAA-TTTTGGATTTTTAAGTGAAGTAGTGAT
1 AAAGTTTTGA--TATTTTTAACTATTTCGAAATAAAAGTTTT-GATTTTTAAGTAAAGTAGTGA-
* *
23294441 TTTGATTAAAACAAAAGAAACTTTAGATTTTTAAAAA-TAAAAAATTGTTTTTTAGTCATTTTAA
62 TTTGA-TAAAAAAAAAGAAAGTTTAGATTTTTAAAAAGTAAAAAATTGTTTTTTAGTCATTTTAA
*
23294505 AGAAAAATTTTAATTTTTTAAAC
126 AGAAAAAGTTTAA-TTTTTAAAC
* *
23294528 AAAGTTTTGAT-TTTTTAACTATTTCAAAATAAAAGTTTGGATTTTTAAGTAAAGTAGTGATTT-
1 AAAGTTTTGATATTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTTG
* * * *
23294591 A-AAAAAAAAATAAAGTTTAGATTTTTAAAATTAGAAAAAAATCTATTTTTTTAGGCATTTTAAA
66 ATAAAAAAAAAGAAAGTTTAGATTTTTAAAA--AGTAAAAAAT-T-GTTTTTTAGTCATTTT-AA
23294655 AGAAAAAGTTTAA-TTTTAAAC
126 AGAAAAAGTTTAATTTTTAAAC
23294676 AAAG-TTTGATAATTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAG-AAAGTAGTGATTT
1 AAAGTTTTGAT-ATTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTT
23294739 TGTTTTTAAA
Statistics
Matches: 316, Mismatches: 29, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
144 26 0.08
146 2 0.01
147 16 0.05
148 82 0.26
149 73 0.23
150 38 0.12
151 48 0.15
152 27 0.09
153 4 0.01
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (147 bp):
AAAGTTTTGATATTTTTAACTATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTTG
ATAAAAAAAAAGAAAGTTTAGATTTTTAAAAAGTAAAAAATTGTTTTTTAGTCATTTTAAAGAAA
AAGTTTAATTTTTAAAC
Found at i:23294728 original size:23 final size:23
Alignment explanation
Indices: 23294702--23294767 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 23
23294692 TAACTATTTC
23294702 GAAATAAAAGTTTTGATTTTTAA
1 GAAATAAAAGTTTTGATTTTTAA
**
23294725 GAAAGT-AGTGATTTTG-TTTTTAA
1 GAAA-TAAAAG-TTTTGATTTTTAA
* *
23294748 AAAGATAAAACTTTTGATTT
1 GAA-ATAAAAGTTTTGATTT
23294768 CAAAAAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 9
0.68 0.13 0.19
Matches are distributed among these distances:
23 21 0.66
24 11 0.34
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (23 bp):
GAAATAAAAGTTTTGATTTTTAA
Found at i:23295633 original size:13 final size:13
Alignment explanation
Indices: 23295612--23295643 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
23295602 CAGAATTAAA
*
23295612 AGAAATAGAAAAT
1 AGAAGTAGAAAAT
23295625 AGAAGTAGAAAAT
1 AGAAGTAGAAAAT
23295638 AGAAGT
1 AGAAGT
23295644 GTCAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.22, T:0.16
Consensus pattern (13 bp):
AGAAGTAGAAAAT
Found at i:23297989 original size:17 final size:16
Alignment explanation
Indices: 23297967--23297998 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23297957 GACATATAAT
*
23297967 AAAAAAGAAAAAATTG
1 AAAAAAAAAAAAATTG
23297983 AAAAAAAAAAAAATTG
1 AAAAAAAAAAAAATTG
23297999 TGTTGTCTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.12
Consensus pattern (16 bp):
AAAAAAAAAAAAATTG
Found at i:23308279 original size:24 final size:23
Alignment explanation
Indices: 23308252--23308297 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
23308242 GTTTGAGAGC
*
23308252 TTAGTTTTATAGTATTTGTGCATA
1 TTAGATTTAT-GTATTTGTGCATA
*
23308276 TTAGATTTATTTATTTGTGCAT
1 TTAGATTTATGTATTTGTGCAT
23308298 CAATTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.04, G:0.15, T:0.57
Consensus pattern (23 bp):
TTAGATTTATGTATTTGTGCATA
Found at i:23311912 original size:113 final size:113
Alignment explanation
Indices: 23311714--23311941 Score: 420
Period size: 113 Copynumber: 2.0 Consensus size: 113
23311704 GTTCTGAAAT
* *
23311714 ACGATGCTCGGACAGTGCTAAAGTACTTACACACATACAGCCTTACAAGATTTGAAAGACCTCGA
1 ACGATGCTCGGACAGTGCTAAAGTACTTACACACATACAGCCTTACAAGATTCGAAACACCTCGA
23311779 GCATTGATTAGCGACCAAGGTTCTCATTCCTATAATAACCAAGTGGCG
66 GCATTGATTAGCGACCAAGGTTCTCATTCCTATAATAACCAAGTGGCG
23311827 ACGATGCTCGGACAGTGCTAAAGTACTTACACACATACAGCCTTACAAGATTCGAAACACCTCGA
1 ACGATGCTCGGACAGTGCTAAAGTACTTACACACATACAGCCTTACAAGATTCGAAACACCTCGA
* *
23311892 GCATTGATTAGCGACCAAGGTTCTCATTTCTATAATAACCAAGTTGCG
66 GCATTGATTAGCGACCAAGGTTCTCATTCCTATAATAACCAAGTGGCG
23311940 AC
1 AC
23311942 AGCTTTGAAA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (113 bp):
ACGATGCTCGGACAGTGCTAAAGTACTTACACACATACAGCCTTACAAGATTCGAAACACCTCGA
GCATTGATTAGCGACCAAGGTTCTCATTCCTATAATAACCAAGTGGCG
Found at i:23326075 original size:42 final size:42
Alignment explanation
Indices: 23326029--23326585 Score: 679
Period size: 42 Copynumber: 13.1 Consensus size: 42
23326019 AAGGAAAACA
* * *
23326029 TTCATTGCATTTAGAGGCCTAAGTGTGGAAGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
23326071 TTCATTGCATTTAGAGGGCCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
** * * * **
23326113 TTCATTACATTTAAAGGCCCAGGTGTAGAGACCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
23326155 TTCATCGCACTTAGAGGCCCAGGTGTGGAGG-CTCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTC-CATTTACTT
* * * * **
23326197 TTCATAGCATTTAGAGGCCTAGGTGTGGTGGTTTATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
*
23326239 TTCATCGCTTTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
23326281 TTCATCGCATTCAGAGG-CCAAGGTGTGGAGGTCCATTTATTT
1 TTCATCGCATTTAGAGGCCCAA-GTGTGGAGGTCCATTTACTT
*
23326323 TTCATCGCATTTAGAAGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
*
23326365 TTCATCACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * * *
23326407 TTCATCGCATTCAGAAG-CCAATGTGTGGAGGTTCATTTATTT
1 TTCATCGCATTTAGAGGCCCAA-GTGTGGAGGTCCATTTACTT
* *
23326449 TTCATCGCATTTAGAGGCAGAGGCCCAGGTGTGGAGGTCCATGTACTT
1 TTCATCGCATTT------AGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * * *
23326497 TTCATTGCATTTAGAGGCCCAGGTGTGGAGCTCCATTAACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
23326539 TTCATCGCATTTAGAGGCCCAGGTGTGGAGGTCCAATTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
23326581 TTCAT
1 TTCAT
23326586 TGCAAGTGTG
Statistics
Matches: 447, Mismatches: 56, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
41 9 0.02
42 399 0.89
43 4 0.01
48 32 0.07
49 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
Found at i:23336839 original size:15 final size:15
Alignment explanation
Indices: 23336789--23336839 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
23336779 AAACCCTGAG
*
23336789 GAAGAGAA-AAGAACT
1 GAAGAGAAGAAGGA-T
*
23336804 GAAGA-AGAGAAGGAG
1 GAAGAGA-AGAAGGAT
23336819 GAAGAGAAGAAGGAT
1 GAAGAGAAGAAGGAT
23336834 GAAGAG
1 GAAGAG
23336840 GATGTAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 1 0.03
15 24 0.80
16 5 0.17
ACGTcount: A:0.55, C:0.02, G:0.39, T:0.04
Consensus pattern (15 bp):
GAAGAGAAGAAGGAT
Found at i:23337903 original size:17 final size:19
Alignment explanation
Indices: 23337875--23337922 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
23337865 ATAAAAGTAG
23337875 AGAAGAAGAAAAAGAA-AGC
1 AGAAGAA-AAAAAGAATAGC
23337894 A-AAGAAAAAAAGAATAGC
1 AGAAGAAAAAAAGAATAGC
23337912 AGAA-AAAAAAA
1 AGAAGAAAAAAA
23337923 ATATTGCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 8 0.30
18 16 0.59
19 3 0.11
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.02
Consensus pattern (19 bp):
AGAAGAAAAAAAGAATAGC
Done.