Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60359545
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 900 characters in sequence are not A, C, G, or T
File 92 of 193
Found at i:29952651 original size:25 final size:23
Alignment explanation
Indices: 29952612--29952660 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 23
29952602 TAGTTTTATG
29952612 TTTTATTTATTTTTATTGTTAGCTA
1 TTTTATTTATTTTTATT-TTA-CTA
29952637 TTTTATTT-TATTTTATTTTACTA
1 TTTTATTTAT-TTTTATTTTACTA
29952660 T
1 T
29952661 GCACTATACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.17
24 4 0.17
25 15 0.65
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (23 bp):
TTTTATTTATTTTTATTTTACTA
Found at i:29953754 original size:19 final size:20
Alignment explanation
Indices: 29953717--29953761 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
29953707 CAAAATAATC
*
29953717 AAAATAATTTTCAAAAATTG
1 AAAATAATTTTCAAAAATTA
*
29953737 AAAATAATTTT-TAAAATTA
1 AAAATAATTTTCAAAAATTA
29953756 AAAATA
1 AAAATA
29953762 TTTATAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATAATTTTCAAAAATTA
Found at i:29955970 original size:13 final size:13
Alignment explanation
Indices: 29955952--29955976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29955942 ATCGTGTTCT
29955952 TTAGTTAATTTAA
1 TTAGTTAATTTAA
29955965 TTAGTTAATTTA
1 TTAGTTAATTTA
29955977 GTTTTTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTAGTTAATTTAA
Found at i:29959980 original size:42 final size:43
Alignment explanation
Indices: 29959920--29960006 Score: 149
Period size: 42 Copynumber: 2.0 Consensus size: 43
29959910 AGACGGTTTT
*
29959920 CACGTGGAAAGGGTAGATTAATGAGTTTG-GTAAAACCTAATC
1 CACGTGGAAAGGGAAGATTAATGAGTTTGTGTAAAACCTAATC
*
29959962 CACGTGGAAAGGGAAGATTAATGAGTTTGTGTGAAACCTAATC
1 CACGTGGAAAGGGAAGATTAATGAGTTTGTGTAAAACCTAATC
29960005 CA
1 CA
29960007 GCAAAATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
42 28 0.67
43 14 0.33
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (43 bp):
CACGTGGAAAGGGAAGATTAATGAGTTTGTGTAAAACCTAATC
Found at i:29961464 original size:12 final size:12
Alignment explanation
Indices: 29961447--29961489 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
29961437 TTAAATGAAG
29961447 TATTATATCACA
1 TATTATATCACA
*
29961459 TATTATAATGA-A
1 TATTAT-ATCACA
29961471 GTATTATATCACA
1 -TATTATATCACA
29961484 TATTAT
1 TATTAT
29961490 GATATACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (12 bp):
TATTATATCACA
Found at i:29961474 original size:25 final size:25
Alignment explanation
Indices: 29961440--29961489 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
29961430 AAATGATTTA
29961440 AATGAAGTATTATATCACATATTAT
1 AATGAAGTATTATATCACATATTAT
29961465 AATGAAGTATTATATCACATATTAT
1 AATGAAGTATTATATCACATATTAT
29961490 GATATACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (25 bp):
AATGAAGTATTATATCACATATTAT
Found at i:29961699 original size:35 final size:35
Alignment explanation
Indices: 29961652--29961724 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 35
29961642 AATATAACCT
* ** *
29961652 AAAAAACCAAAAAAGGAAGCCCAAATGAAAAA-GC
1 AAAAAAACAAAAAAAAAAACCCAAATGAAAAATGC
29961686 AAAAAAACAAAAAAAAAAACCCAAATGAAAAATGC
1 AAAAAAACAAAAAAAAAAACCCAAATGAAAAATGC
29961721 AAAA
1 AAAA
29961725 CACAATCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 28 0.82
35 6 0.18
ACGTcount: A:0.71, C:0.15, G:0.10, T:0.04
Consensus pattern (35 bp):
AAAAAAACAAAAAAAAAAACCCAAATGAAAAATGC
Found at i:29963297 original size:20 final size:20
Alignment explanation
Indices: 29963269--29963308 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
29963259 TCCCTTCTCC
*
29963269 ATGATATATGTGATAATGTT
1 ATGACATATGTGATAATGTT
29963289 ATGACATATGTGATAATGTT
1 ATGACATATGTGATAATGTT
29963309 TCTTTCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (20 bp):
ATGACATATGTGATAATGTT
Found at i:29964488 original size:16 final size:16
Alignment explanation
Indices: 29964465--29964520 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
29964455 CGTTTGGTTC
29964465 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
29964481 GGTGTAATAGAATAGA
1 GCTGTAATGGAATAGA
*
29964497 ACTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
29964513 GCTGTAAT
1 GCTGTAAT
29964521 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.39, C:0.05, G:0.29, T:0.27
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:29964762 original size:58 final size:56
Alignment explanation
Indices: 29964693--29964838 Score: 179
Period size: 58 Copynumber: 2.5 Consensus size: 56
29964683 AATTTTAATG
*
29964693 ATTATTATTAAATATAATTTAATAAAAATAT-TAATTTATTTAATTATATTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATATGTAATTTA-ATAA-TAT-TTTTAACATA
* *
29964751 ATTATTATTAAATACAATTTAATAAAATAATATGTAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATATAATTTAAT-AAA-AATATGTAATTTAATAATATTTTTAACATA
*
29964809 ATTATTATTAAAATATGAA-TTAGTAAAAAT
1 ATTATTATT-AAATAT-AATTTAATAAAAAT
29964839 TATAATATAT
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 3 0.04
58 43 0.55
59 15 0.19
60 10 0.13
61 7 0.09
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (56 bp):
ATTATTATTAAATATAATTTAATAAAAATATGTAATTTAATAATATTTTTAACATA
Found at i:29968182 original size:33 final size:34
Alignment explanation
Indices: 29968119--29968185 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
29968109 TTATATTGAA
* *
29968119 TAAATATAATTATTATATATATAATATGTTAATG
1 TAAATATAATTATTATATAGACAATATGTTAATG
*
29968153 TAAA-ATAA-TATTATATAGACAATTGTGTTAATG
1 TAAATATAATTATTATATAGACAA-TATGTTAATG
29968186 ATTTGTGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 12 0.41
33 13 0.45
34 4 0.14
ACGTcount: A:0.46, C:0.01, G:0.09, T:0.43
Consensus pattern (34 bp):
TAAATATAATTATTATATAGACAATATGTTAATG
Found at i:29969170 original size:26 final size:26
Alignment explanation
Indices: 29969134--29969189 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
29969124 CATTAACTAT
29969134 ATCTGGATCTTAGGCCTATCCTTTAC
1 ATCTGGATCTTAGGCCTATCCTTTAC
29969160 ATCTGGATCTTAGGCCTATCCTTTAC
1 ATCTGGATCTTAGGCCTATCCTTTAC
29969186 ATCT
1 ATCT
29969190 TCCTCTTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (26 bp):
ATCTGGATCTTAGGCCTATCCTTTAC
Found at i:29971138 original size:20 final size:20
Alignment explanation
Indices: 29971105--29971143 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
29971095 TCAATATAAA
29971105 ATAAAAATATTTTAATTATT
1 ATAAAAATATTTTAATTATT
29971125 ATAAATAATA-TTTAATTAT
1 ATAAA-AATATTTTAATTAT
29971144 AAAAAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAAAAATATTTTAATTATT
Found at i:29971200 original size:34 final size:34
Alignment explanation
Indices: 29971125--29971312 Score: 125
Period size: 34 Copynumber: 5.6 Consensus size: 34
29971115 TTTAATTATT
* * ***
29971125 ATAAATAA-TATTTAATTATAAAAAACAATGTAA
1 ATAATTAATTATTTAATTATATAAAACAACCCAA
*
29971158 ATATTTAATTATTTAATTATATAAAACAACCCAA
1 ATAATTAATTATTTAATTATATAAAACAACCCAA
* * * ** **
29971192 TTAATTAATTAATTATTTATTTATTTATTAA---AA
1 ATAATTAATTATTTAATTA--TATAAAACAACCCAA
*
29971225 ATAATTCAAATATTTAATTAT-TAAAAACAACCCAA
1 ATAATT-AATTATTTAATTATAT-AAAACAACCCAA
* * * *
29971260 ATACTTAATTATTTAATTTTTTAAAACAACTCAA
1 ATAATTAATTATTTAATTATATAAAACAACCCAA
* *
29971294 TTAATTAATTAATTAATTA
1 ATAATTAATTATTTAATTA
29971313 ATTAATTATT
Statistics
Matches: 116, Mismatches: 30, Indels: 17
0.71 0.18 0.10
Matches are distributed among these distances:
31 1 0.01
32 4 0.03
33 13 0.11
34 84 0.72
35 8 0.07
36 6 0.05
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (34 bp):
ATAATTAATTATTTAATTATATAAAACAACCCAA
Found at i:29971251 original size:102 final size:102
Alignment explanation
Indices: 29971131--29971345 Score: 313
Period size: 102 Copynumber: 2.1 Consensus size: 102
29971121 TATTATAAAT
*** *
29971131 AATATTTAATTATAAAAAACAATGTAAATATTTAATTATTTAATTATATAAAACAACCCAATTAA
1 AATATTTAATTATAAAAAACAACCCAAATACTTAATTATTTAATTATATAAAACAACCCAATTAA
* * * * *
29971196 TTAATTAATTATTTATTTATTTATTAAAAATAATTCA
66 TTAATTAATTAATTAATTAATTATTAAAAACAACTCA
* * * *
29971233 AATATTTAATTATTAAAAACAACCCAAATACTTAATTATTTAATTTTTTAAAACAACTCAATTAA
1 AATATTTAATTATAAAAAACAACCCAAATACTTAATTATTTAATTATATAAAACAACCCAATTAA
29971298 TTAATTAATTAATTAATTAATTATTAAAAACAACTCA
66 TTAATTAATTAATTAATTAATTATTAAAAACAACTCA
29971335 AATATTTAATT
1 AATATTTAATT
29971346 CAAAATATTT
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (102 bp):
AATATTTAATTATAAAAAACAACCCAAATACTTAATTATTTAATTATATAAAACAACCCAATTAA
TTAATTAATTAATTAATTAATTATTAAAAACAACTCA
Found at i:29971260 original size:26 final size:26
Alignment explanation
Indices: 29971209--29971272 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
29971199 ATTAATTATT
* * **
29971209 TATTTATTTATTAAAAATAATTCAAA
1 TATTTAATTATTAAAAACAACCCAAA
29971235 TATTTAATTATTAAAAACAACCCAAA
1 TATTTAATTATTAAAAACAACCCAAA
*
29971261 TACTTAATTATT
1 TATTTAATTATT
29971273 TAATTTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (26 bp):
TATTTAATTATTAAAAACAACCCAAA
Found at i:29971301 original size:4 final size:4
Alignment explanation
Indices: 29971292--29971324 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
29971282 AAAACAACTC
29971292 AATT AATT AATT AATT AATT AATT AATT -ATT AA
1 AATT AATT AATT AATT AATT AATT AATT AATT AA
29971325 AAACAACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:29971310 original size:42 final size:42
Alignment explanation
Indices: 29971264--29971345 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
29971254 ACCCAAATAC
* * * *
29971264 TTAATTATTTAATTTTTTAAAACAACTCAATTAATTAATTAA
1 TTAATTAATTAATTATTAAAAACAACTCAAATAATTAATTAA
*
29971306 TTAATTAATTAATTATTAAAAACAACTCAAATATTTAATT
1 TTAATTAATTAATTATTAAAAACAACTCAAATAATTAATT
29971346 CAAAATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (42 bp):
TTAATTAATTAATTATTAAAAACAACTCAAATAATTAATTAA
Found at i:29971353 original size:14 final size:13
Alignment explanation
Indices: 29971334--29971440 Score: 71
Period size: 14 Copynumber: 8.0 Consensus size: 13
29971324 AAAACAACTC
29971334 AAATATTTAATTCA
1 AAATATTTAATT-A
29971348 AAATATTTAATTA
1 AAATATTTAATTA
29971361 TATTTAATTATTTAATT-
1 -A---AA-TATTTAATTA
29971378 AAATATTTAATTA
1 AAATATTTAATTA
* ***
29971391 TAAA-A-ATAACCC
1 -AAATATTTAATTA
29971403 AAATATTTAATTCA
1 AAATATTTAATT-A
29971417 AAATATTTAATT-
1 AAATATTTAATTA
29971429 AAATA-TTAATTA
1 AAATATTTAATTA
29971441 TTAAAAACAA
Statistics
Matches: 74, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
11 9 0.12
12 18 0.24
13 7 0.09
14 28 0.38
16 1 0.01
17 2 0.03
18 9 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (13 bp):
AAATATTTAATTA
Found at i:29971438 original size:70 final size:71
Alignment explanation
Indices: 29971226--29971442 Score: 235
Period size: 69 Copynumber: 3.0 Consensus size: 71
29971216 TTATTAAAAA
* * * * *
29971226 TAATTCAAATATTTAATTATTAAAAACAACCCAAATACTTAATT-ATTTAATTTTTTAA-AACAA
1 TAATT-AAATAATTAATTATTAAAAACAACCCAAATATTTAATTCA---AAATATTTAATTA-AA
*
29971289 CTCAATTAATTAAT
61 -T--ATTAATTATT
* * *
29971303 TAATTAATTAATTAATTATTAAAAACAACTCAAATATTTAATTCAAAATATTTAATTATAT-TTA
1 TAATTAAATAATTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTAAATATTA
29971367 ATTATT
66 ATTATT
* *
29971373 TAATTAAATATTTAATTA-TAAAAATAACCCAAATATTTAATTCAAAATATTTAATTAAATATTA
1 TAATTAAATAATTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTAAATATTA
29971437 ATTATT
66 ATTATT
29971443 AAAAACAATC
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
69 39 0.32
70 33 0.27
73 1 0.01
74 9 0.07
75 1 0.01
76 34 0.28
77 6 0.05
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (71 bp):
TAATTAAATAATTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTAAATATTA
ATTATT
Found at i:29971496 original size:4 final size:4
Alignment explanation
Indices: 29971487--29971511 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
29971477 GTAACAACCC
29971487 AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT A
29971512 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:29971498 original size:195 final size:190
Alignment explanation
Indices: 29971226--29971594 Score: 548
Period size: 195 Copynumber: 1.9 Consensus size: 190
29971216 TTATTAAAAA
* *
29971226 TAATTCAAATATTTAATTATTAAAAACAACCCAAATACTTAATTATTTAATTTTTTAAAACAACT
1 TAATTCAAATATTTAATTATTAAAAACAACCCAAATACTTAATTATTTAATTATTTAAAACAACC
* *
29971291 CAATTAATTAATTAATTAATTAATTAATTATTAAAAACAACTCAAATATTTAATTCAAAATATTT
66 CAATTAATTAATTAATTAATTAATTAATTATTAAAAAC-ACCCAAATATTTAATTAAAAATATTT
*
29971356 AATTATATTTAATTATTTAATTAAATATTTAATTA-TAAAAATAACCCAAATATTTAATTCAAAA
130 AA-T-TATTT-A--A-TTAA--AAATATTTAATTATTAAAAACAACCCAAATATTTAATTCAAAA
29971420 TATT
187 TATT
* **
29971424 TAATT-AAATA-TTAATTATTAAAAACAATCCAAATAC-TAATTATTTAATTATTTGTAACAACC
1 TAATTCAAATATTTAATTATTAAAAACAACCCAAATACTTAATTATTTAATTATTTAAAACAACC
*
29971486 CAATTAATTAATTAATTAATTAATTATTTATTAAAAACACCCAAATATTTAATTAAAAATATTTA
66 CAATTAATTAATTAATTAATTAATTAATTATTAAAAACACCCAAATATTTAATTAAAAATATTTA
29971551 ATTATTTAATTAAAAATATTTAATTATTAAAAACAACCCAAATA
131 ATTATTTAATTAAAAATATTTAATTATTAAAAACAACCCAAATA
29971595 ATTTTGACGA
Statistics
Matches: 161, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
186 13 0.08
187 16 0.10
188 4 0.02
189 1 0.01
191 1 0.01
192 5 0.03
193 1 0.01
194 26 0.16
195 59 0.37
196 25 0.16
197 5 0.03
198 5 0.03
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (190 bp):
TAATTCAAATATTTAATTATTAAAAACAACCCAAATACTTAATTATTTAATTATTTAAAACAACC
CAATTAATTAATTAATTAATTAATTAATTATTAAAAACACCCAAATATTTAATTAAAAATATTTA
ATTATTTAATTAAAAATATTTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATT
Found at i:29971547 original size:14 final size:14
Alignment explanation
Indices: 29971528--29971576 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
29971518 AAAAACACCC
29971528 AAATATTTAATTAA
1 AAATATTTAATTAA
29971542 AAATATTTAA-T--
1 AAATATTTAATTAA
29971553 ---TATTTAATTAA
1 AAATATTTAATTAA
29971564 AAATATTTAATTA
1 AAATATTTAATTA
29971577 TTAAAAACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
8 7 0.24
9 1 0.03
13 1 0.03
14 20 0.69
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AAATATTTAATTAA
Found at i:29971556 original size:22 final size:22
Alignment explanation
Indices: 29971505--29971578 Score: 96
Period size: 22 Copynumber: 3.4 Consensus size: 22
29971495 AATTAATTAA
* *
29971505 TTAATTATTT-ATTAAAAACAC
1 TTAATTATTTAATTAAAAATAT
** *
29971526 CCAAATATTTAATTAAAAATAT
1 TTAATTATTTAATTAAAAATAT
29971548 TTAATTATTTAATTAAAAATAT
1 TTAATTATTTAATTAAAAATAT
29971570 TTAATTATT
1 TTAATTATT
29971579 AAAAACAACC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 7 0.16
22 37 0.84
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAATTATTTAATTAAAAATAT
Found at i:29977750 original size:43 final size:43
Alignment explanation
Indices: 29977699--29978195 Score: 530
Period size: 43 Copynumber: 11.6 Consensus size: 43
29977689 AAAAGTGCTA
* * * *
29977699 CTAAAGACCATGTTCTTTAGAGGCATTTATGGGAAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * *
29977742 TTAAAGACCGTGTTCTTTAGTGGCGTTTGTGGGGAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * ** * *
29977785 CTAAAGATCGTGTTCTTTAACGGTGTTTTTGGGTAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * *
29977828 CTAAAGATCGTGTTCTTTAGCGG-AGTTTGTGGTGAAAGCGCCA
1 CTAAAGACCGTGTTCTTTAGCGGCA-TTTGTGGGGAAAGCGCCG
* *
29977871 CTAAAGATCGTGTTCTTTAGCGG-AGTTTGTGGTGAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCA-TTTGTGGGGAAAGCGCCG
* ** **
29977914 CTAAAGATCGTGTTCTTTAGCGGTGTTTGTGGGGAAAATGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * * * * *
29977957 CTAAAGACCATGTTCTTTCGCGGCAGTTGTAGAGAAAGTGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
** * * *
29978000 CTAAAGATTGTATTCTTTGGCGGCGTTTGTGGGGAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * *
29978043 CTAAAGACCGTGTTCTTTAGTGGCGTTTCTGGGGAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
*
29978086 CTAAATACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* * * * * * * *
29978129 CTAAAGACCATGTTTTTTAGCGACGTTCGTTGGGTAAGCGCAG
1 CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
* *
29978172 CTAAAGACCATGTTCTTTAACGGC
1 CTAAAGACCGTGTTCTTTAGCGGC
29978196 GTTTTTCCAC
Statistics
Matches: 387, Mismatches: 65, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
43 387 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (43 bp):
CTAAAGACCGTGTTCTTTAGCGGCATTTGTGGGGAAAGCGCCG
Found at i:29979062 original size:27 final size:27
Alignment explanation
Indices: 29978991--29979194 Score: 149
Period size: 27 Copynumber: 7.9 Consensus size: 27
29978981 GATCTTATTA
* * *
29978991 CAGAATACACCACAAAGGTAAT-CATA
1 CAGAGTACACCACAAAGGCAATCCATT
* *
29979017 CAG-GATTCACCA-TAAGGCAATCCATT
1 CAGAG-TACACCACAAAGGCAATCCATT
* *
29979043 CAAAGTACACCACAGAGGCAATCCATT
1 CAGAGTACACCACAAAGGCAATCCATT
* ** *
29979070 CAGAGTACACAACAAAGGTGATCTATT
1 CAGAGTACACCACAAAGGCAATCCATT
* **
29979097 CAGAGTACACCATAAAGGTGATCCATT
1 CAGAGTACACCACAAAGGCAATCCATT
*
29979124 CAGAGTACACCA-TAA--C-A---ATT
1 CAGAGTACACCACAAAGGCAATCCATT
* **
29979144 CAAAGTATGCCACAAAGGCAATCCATT
1 CAGAGTACACCACAAAGGCAATCCATT
*
29979171 CAGAGTACGCCACAAAGGCTAATC
1 CAGAGTACACCACAAAGGC-AATC
29979195 AGATGCCACC
Statistics
Matches: 140, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
20 12 0.09
21 2 0.01
23 2 0.01
24 1 0.01
25 7 0.05
26 22 0.16
27 90 0.64
28 4 0.03
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.19
Consensus pattern (27 bp):
CAGAGTACACCACAAAGGCAATCCATT
Found at i:29982401 original size:46 final size:47
Alignment explanation
Indices: 29982334--29982428 Score: 165
Period size: 46 Copynumber: 2.0 Consensus size: 47
29982324 TTAATCTTGA
29982334 ATTGATTGGAAGGTTTTCAAGAATAAACTCAACTT-ACCTTGTTTTT
1 ATTGATTGGAAGGTTTTCAAGAATAAACTCAACTTGACCTTGTTTTT
* *
29982380 ATTGATTGGAAGGTTTTCAAGATTAAACTCAACTTGACTTTGTTTTT
1 ATTGATTGGAAGGTTTTCAAGAATAAACTCAACTTGACCTTGTTTTT
29982427 AT
1 AT
29982429 CGTTTTTTCG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 34 0.74
47 12 0.26
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (47 bp):
ATTGATTGGAAGGTTTTCAAGAATAAACTCAACTTGACCTTGTTTTT
Found at i:29986813 original size:15 final size:16
Alignment explanation
Indices: 29986793--29986826 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
29986783 ACTGTTTACT
29986793 AAAGTA-TGTTTTTCA
1 AAAGTATTGTTTTTCA
*
29986808 AAAGTATTTTTTTTCA
1 AAAGTATTGTTTTTCA
29986824 AAA
1 AAA
29986827 ATTAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (16 bp):
AAAGTATTGTTTTTCA
Found at i:29988351 original size:5 final size:5
Alignment explanation
Indices: 29988343--29988383 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
29988333 GAGATAGAAT
29988343 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
29988384 ATATTTGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (5 bp):
TCGAA
Found at i:29988981 original size:42 final size:42
Alignment explanation
Indices: 29988934--29989014 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
29988924 AAAAAGAGTT
*
29988934 GTTTATGAGTGTTATTT-AGGAATAAAATTATATTTGGGTTTA
1 GTTTATGAGTGTT-TTTGAAGAATAAAATTATATTTGGGTTTA
*
29988976 GTTTATGAGTGTTTTTGAAGAATGAAATTATATTTGGGT
1 GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGT
29989015 ATAAAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 3 0.08
42 33 0.92
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (42 bp):
GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGTTTA
Found at i:29993490 original size:20 final size:19
Alignment explanation
Indices: 29993454--29993497 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
29993444 AAGTTTGAGA
*
29993454 TTCAAGGTTCGGGTTCAAG
1 TTCAAGATTCGGGTTCAAG
*
29993473 TTCAAGATTCGAGGTTCACG
1 TTCAAGATTCG-GGTTCAAG
29993493 TTCAA
1 TTCAA
29993498 AATAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (19 bp):
TTCAAGATTCGGGTTCAAG
Found at i:30000868 original size:123 final size:123
Alignment explanation
Indices: 30000649--30000896 Score: 496
Period size: 123 Copynumber: 2.0 Consensus size: 123
30000639 CATCAACTAG
30000649 TAAGGGATTTTTCTTTCTAGAATTCCCATGATTTTGACTTTCAAATTCCATATACTTGTATCTTT
1 TAAGGGATTTTTCTTTCTAGAATTCCCATGATTTTGACTTTCAAATTCCATATACTTGTATCTTT
30000714 CATGGACAATAGTTTTCTCTGACCAATATGCTCTTACCATTCAAAAATAATACCCATC
66 CATGGACAATAGTTTTCTCTGACCAATATGCTCTTACCATTCAAAAATAATACCCATC
30000772 TAAGGGATTTTTCTTTCTAGAATTCCCATGATTTTGACTTTCAAATTCCATATACTTGTATCTTT
1 TAAGGGATTTTTCTTTCTAGAATTCCCATGATTTTGACTTTCAAATTCCATATACTTGTATCTTT
30000837 CATGGACAATAGTTTTCTCTGACCAATATGCTCTTACCATTCAAAAATAATACCCATC
66 CATGGACAATAGTTTTCTCTGACCAATATGCTCTTACCATTCAAAAATAATACCCATC
30000895 TA
1 TA
30000897 CTTTATTGGT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (123 bp):
TAAGGGATTTTTCTTTCTAGAATTCCCATGATTTTGACTTTCAAATTCCATATACTTGTATCTTT
CATGGACAATAGTTTTCTCTGACCAATATGCTCTTACCATTCAAAAATAATACCCATC
Found at i:30011537 original size:15 final size:16
Alignment explanation
Indices: 30011517--30011549 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
30011507 TTTGTCTCGA
30011517 CATCTTTTTCTT-CTT
1 CATCTTTTTCTTCCTT
30011532 CATCTTTTTCTTCCTT
1 CATCTTTTTCTTCCTT
30011548 CA
1 CA
30011550 CACGAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (16 bp):
CATCTTTTTCTTCCTT
Found at i:30026877 original size:3 final size:3
Alignment explanation
Indices: 30026869--30026919 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
30026859 GTTATCTCTT
30026869 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
30026918 AT
1 AT
30026920 TAAAATGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:30028198 original size:15 final size:16
Alignment explanation
Indices: 30028178--30028211 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
30028168 GTTGGATGAC
30028178 TAAAAAATCTAAT-TT
1 TAAAAAATCTAATATT
*
30028193 TAAAAAATTTAATATT
1 TAAAAAATCTAATATT
30028209 TAA
1 TAA
30028212 TTCGGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAAAAATCTAATATT
Found at i:30029511 original size:18 final size:18
Alignment explanation
Indices: 30029488--30029538 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
30029478 TCCACTGCTG
*
30029488 CCATAACCTGACCCACTT
1 CCATAACCTGAACCACTT
30029506 CCATAACCTGAACCACTT
1 CCATAACCTGAACCACTT
*
30029524 CCATACCCTGAACCA
1 CCATAACCTGAACCA
30029539 TTGCCTCCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.31, C:0.43, G:0.06, T:0.20
Consensus pattern (18 bp):
CCATAACCTGAACCACTT
Found at i:30029570 original size:27 final size:27
Alignment explanation
Indices: 30029540--30029608 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
30029530 CCTGAACCAT
*
30029540 TGCCTCCACCACCACCTCCTCCTCCAC
1 TGCCACCACCACCACCTCCTCCTCCAC
*
30029567 TGCCACCGCCACCACCTCCTCCTCCACC
1 TGCCACCACCACCACCTCCTCCTCCA-C
*
30029595 T-CTACCACCACCAC
1 TGCCACCACCACCAC
30029609 TTCCATATCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 35 0.95
28 2 0.05
ACGTcount: A:0.17, C:0.62, G:0.04, T:0.16
Consensus pattern (27 bp):
TGCCACCACCACCACCTCCTCCTCCAC
Found at i:30029706 original size:21 final size:22
Alignment explanation
Indices: 30029680--30029733 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
30029670 GCCACCACCG
*
30029680 CCACCACCACCACCTCCT-CTA
1 CCACCACCACCACCACCTCCTA
*
30029701 CCACCACCACCGCCACCTCCTA
1 CCACCACCACCACCACCTCCTA
*
30029723 TC-CCACCACCA
1 CCACCACCACCA
30029734 GACCCATACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.24, C:0.63, G:0.02, T:0.11
Consensus pattern (22 bp):
CCACCACCACCACCACCTCCTA
Found at i:30029716 original size:24 final size:24
Alignment explanation
Indices: 30029680--30029733 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
30029670 GCCACCACCG
*
30029680 CCACCACCACCACCTCCTCTACCA
1 CCACCACCACCACCTCCTATACCA
* *
30029704 CCACCACCGCCACCTCCTATCCCA
1 CCACCACCACCACCTCCTATACCA
30029728 CCACCA
1 CCACCA
30029734 GACCCATACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.63, G:0.02, T:0.11
Consensus pattern (24 bp):
CCACCACCACCACCTCCTATACCA
Found at i:30029768 original size:12 final size:12
Alignment explanation
Indices: 30029734--30029780 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
30029724 CCCACCACCA
30029734 GACCCATACCCT
1 GACCCATACCCT
* *
30029746 GATCCAGACCCT
1 GACCCATACCCT
*
30029758 GACCCATACCCA
1 GACCCATACCCT
30029770 GACCCACTACC
1 GACCCA-TACC
30029781 AGATCCAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 25 0.86
13 4 0.14
ACGTcount: A:0.28, C:0.49, G:0.11, T:0.13
Consensus pattern (12 bp):
GACCCATACCCT
Found at i:30029811 original size:6 final size:6
Alignment explanation
Indices: 30029800--30029845 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
30029790 GCTTCCACCC
* *
30029800 CCTCCA CCTCCA CCTCCA CCTCCG CCCCCA CAC-CC- CCTCCA CCTCC
1 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA C-CTCCA CCTCCA CCTCC
30029846 TCCACTACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
4 1 0.03
5 3 0.09
6 29 0.85
7 1 0.03
ACGTcount: A:0.13, C:0.72, G:0.02, T:0.13
Consensus pattern (6 bp):
CCTCCA
Found at i:30029916 original size:12 final size:12
Alignment explanation
Indices: 30029865--30029917 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
30029855 ATAAGCTCCC
30029865 GAACCATATCCA
1 GAACCATATCCA
* *
30029877 GAGCCACT-TCCG
1 GAACCA-TATCCA
* *
30029889 GAACCATACCCT
1 GAACCATATCCA
30029901 GAACCATATCCA
1 GAACCATATCCA
30029913 GAACC
1 GAACC
30029918 TGAGCCTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.34, C:0.38, G:0.13, T:0.15
Consensus pattern (12 bp):
GAACCATATCCA
Found at i:30036876 original size:98 final size:98
Alignment explanation
Indices: 30036699--30036894 Score: 295
Period size: 98 Copynumber: 2.0 Consensus size: 98
30036689 AAACCTTGAA
* *
30036699 AAAGAGTATTCGATTATCTCGGTTTGAAGAAAAATCGCGCCTAGTAAGTTCAGGCACAAATTTCC
1 AAAGAGTATTCGATTATCTCGATTTGAAGAAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTCC
* *
30036764 AAAACCCGAGATAAAGAAATATTGCCTCGATTT
66 AAAACCCAACATAAAGAAATATTGCCTCGATTT
* * *
30036797 AAAG-GTATTCGATTATCTCGATTTGAAGAAAAAATCGCTCCTAGTAAGTTAAGGCACGAATTTT
1 AAAGAGTATTCGATTATCTCGATTTGAAG-AAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTC
* *
30036861 TAAAACCCAACATAAAGGAATATTGCCTCGATTT
65 CAAAACCCAACATAAAGAAATATTGCCTCGATTT
30036895 TAAATATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
97 23 0.26
98 65 0.74
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (98 bp):
AAAGAGTATTCGATTATCTCGATTTGAAGAAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTCC
AAAACCCAACATAAAGAAATATTGCCTCGATTT
Found at i:30037259 original size:28 final size:29
Alignment explanation
Indices: 30037186--30037334 Score: 140
Period size: 29 Copynumber: 5.1 Consensus size: 29
30037176 TAAAACACAA
** *
30037186 TTTTGGAAAGTTTTAGGGATAAAAATGTCAT
1 TTTTGG-AAGTTCGAGGG-TAAAAATGTAAT
* * *
30037217 TTTAGGAAAATTCGA-GGTAAAAATGTGAT
1 TTTTGG-AAGTTCGAGGGTAAAAATGTAAT
*
30037246 TTTTGGAAGTTCGAGGGCAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTAAT
* * *
30037275 TTTTGAAAGTTC-AAGGAAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTAAT
* *
30037303 TTTTGAGAAGTTCGAGGGTCAAAATGTGAT
1 TTTTG-GAAGTTCGAGGGTAAAAATGTAAT
30037333 TT
1 TT
30037335 CAGGATAGTT
Statistics
Matches: 98, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
28 26 0.27
29 45 0.46
30 16 0.16
31 11 0.11
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (29 bp):
TTTTGGAAGTTCGAGGGTAAAAATGTAAT
Found at i:30037268 original size:58 final size:60
Alignment explanation
Indices: 30037206--30037350 Score: 172
Period size: 58 Copynumber: 2.5 Consensus size: 60
30037196 TTTTAGGGAT
* * * *
30037206 AAAAATGTCATTTTAGGAAAATTCGAGGTAAAAATGTGATTTTTG-GAAGTTCGAGGG-C
1 AAAAATGTAATTTTAGGAAAATTCAAGGAAAAAATGTAATTTTTGAGAAGTTCGAGGGTC
* *
30037264 AAAAATGTAATTTT-TGAAAGTTCAAGGAAAAAATGTAATTTTTGAGAAGTTCGAGGGTC
1 AAAAATGTAATTTTAGGAAAATTCAAGGAAAAAATGTAATTTTTGAGAAGTTCGAGGGTC
* * * *
30037323 -AAAATGTGATTTCAGGATAGTTCAAGGA
1 AAAAATGTAATTTTAGGAAAATTCAAGGA
30037351 CCTTTTGGGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 25 0.34
58 36 0.49
59 13 0.18
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (60 bp):
AAAAATGTAATTTTAGGAAAATTCAAGGAAAAAATGTAATTTTTGAGAAGTTCGAGGGTC
Found at i:30039046 original size:6 final size:6
Alignment explanation
Indices: 30039035--30039127 Score: 61
Period size: 6 Copynumber: 16.2 Consensus size: 6
30039025 GGACATTATT
* ** **
30039035 AATTTA AATTTA GAA--TA ATTTTA AATTTA AAAATA AATTTA ACCTTA
1 AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* ** *
30039082 AA-ATA AATTTA AATTTA AA-ACA AATTTA AACTTA AA-TTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
30039127 A
1 A
30039128 CCTTAAAATA
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
4 1 0.02
5 14 0.22
6 48 0.74
7 2 0.03
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (6 bp):
AATTTA
Found at i:30039057 original size:17 final size:17
Alignment explanation
Indices: 30039035--30039142 Score: 126
Period size: 17 Copynumber: 6.3 Consensus size: 17
30039025 GGACATTATT
*
30039035 AATTTAAATTTAGAATA
1 AATTTAAATTTAAAATA
*
30039052 ATTTTAAATTTAAAAATA
1 AATTTAAATTT-AAAATA
**
30039070 AATTTAACCTTAAAATA
1 AATTTAAATTTAAAATA
*
30039087 AATTTAAATTTAAAACA
1 AATTTAAATTTAAAATA
* *
30039104 AATTTAAACTTAAATTA
1 AATTTAAATTTAAAATA
**
30039121 AATTTAACCTTAAAATA
1 AATTTAAATTTAAAATA
30039138 AATTT
1 AATTT
30039143 TAAAAAATGG
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
17 64 0.83
18 13 0.17
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.40
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:30039687 original size:78 final size:76
Alignment explanation
Indices: 30039554--30040249 Score: 501
Period size: 78 Copynumber: 8.9 Consensus size: 76
30039544 GAATGACTAC
* * * * * * * *
30039554 AATCTGCCCCATGATGGGGGTAAGAAATTGGCTGATGATGATCTGCCCCGAGCTCGAGGTAAAAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCAG-GCTCGGGGTAAGAG
30039619 ATCGAATGGCTGT
65 ATCGAATGG-TGT
* * * *
30039632 AATCAGCCCCAAGCTCGGAGTAAGAGATTGGCTGATGGTGATTTGCACCAGGCTCGGGATAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGC-CCAGGCTCGGGGTAAGAG
* *
30039697 ATCGAATAGTTT
65 ATCGAATGGTGT
* * * * *
30039709 CAATCTGCCCCATGATCGGGGTAAGAGATTTGCTGATGGTGATCTGCCCTTGGCTTGGGGTAAGA
1 -AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCC-AGGCTCGGGGTAAGA
30039774 GATTTGCTG-ATGGTG-
64 GA--T-C-GAATGGTGT
* ** * ** * *
30039789 -ATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGGTTATAATCTACCCCAGGCTCGGGGTAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCT-GCCCAGGCTCGGGGTAAGAG
* *
30039853 ATCGAATGACTGC
65 ATCGAATG-GTGT
* * * *
30039866 AATCTGCCCTAGGCTCGGGGTAAGAGATTGGTTGATGGTGATCTACCTCAGGCTCGGGGTAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCC-CAGGCTCGGGGTAAGAG
30039931 ATCGAATGGTTGT
65 ATCGAATGG-TGT
* * ** * * * * *
30039944 AATCTGCCCTAAGCTCAGGGTAAGAGATTGAATGGCT-GTAATCTGCCCCAGGTTTGAGGTAAGA
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCT-GATGGTGATCTG-CCCAGGCTCGGGGTAAGA
* ** *
30040008 GATTGGCTGATAGT
64 GATCGAATGGT-GT
* * * * *
30040022 GATCTGCCCCAGGCTCGGGGTAAAAGA-T--C-GAATGGCTGCAATCTGCTTCAGGCTCAGGGTA
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTG-ATGG-TG--ATCTGC-CCAGGCTCGGGGTA
* ** *
30040083 AGAGATTGGCTGATGGT
61 AGAGATCGAATGGT-GT
* * * * *
30040100 GATCTG-CCCAGGCTCGGGGTAAGAGATTGACTGATGGTGATTTGCCCCAAGCTCGGGGTAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTG-CCCAGGCTCGGGGTAAGAG
*
30040164 ATCAAATGGATGT
65 ATCGAATGG-TGT
* * * * *
30040177 AATTTGCCTCAAGCTCGAGGTAAAAGATTGGCTGATGGTGATCTGCCTCAAGCTCGGGGTAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCC-CAGGCTCGGGGTAAGAG
30040242 ATCAGAAT
65 ATC-GAAT
30040250 CTTCAGTCTG
Statistics
Matches: 488, Mismatches: 98, Indels: 63
0.75 0.15 0.10
Matches are distributed among these distances:
73 1 0.00
74 2 0.00
75 5 0.01
76 4 0.01
77 59 0.12
78 389 0.80
79 15 0.03
80 6 0.01
81 6 0.01
82 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (76 bp):
AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCAGGCTCGGGGTAAGAGA
TCGAATGGTGT
Found at i:30039688 original size:39 final size:38
Alignment explanation
Indices: 30039570--30040243 Score: 389
Period size: 39 Copynumber: 17.3 Consensus size: 38
30039560 CCCCATGATG
* * * *
30039570 GGGGTAAGAAATTGGCTGATGATGATCTGCCCCGAGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGCCCAG-GCTC
* * * * * * * *
30039609 GAGGTAAAAGATCGAATGGCT-GTAATCAGCCCCAAGCTC
1 GGGGTAAGAGATTGACT-GATGGTGATCTG-CCCAGGCTC
* * *
30039648 GGAGTAAGAGATTGGCTGATGGTGATTTGCACCAGGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGC-CCAGGCTC
* * * * * * *
30039687 GGGATAAGAGATCGAAT-A-GTTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGACTGATG-GT-GATCTG-CCCAGGCTC
* *
30039726 GGGGTAAGAGATTTG-CTGATGGTGATCTGCCCTTGGCTT
1 GGGGTAAGAGA-TTGACTGATGGTGATCTGCCC-AGGCTC
*
30039765 GGGGTAAGAGATTTG-CTGATGGTGATCTGCCCCAAGCTC
1 GGGGTAAGAGA-TTGACTGATGGTGATCTG-CCCAGGCTC
* * * ** * *
30039804 GGGGTAAGAGATCGAATGGTTATAATCTACCCCAGGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCT-GCCCAGGCTC
* * **
30039843 GGGGTAAGAGATCGAATGACT-GCAATCTGCCCTAGGCTC
1 GGGGTAAGAGATTGACTGA-TGGTGATCTGCCC-AGGCTC
** *
30039882 GGGGTAAGAGATTGGTTGATGGTGATCTACCTCAGGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGCC-CAGGCTC
* * * * * *
30039921 GGGGTAAGAGATCGAATGGTTGTAATCTGCCCTAAGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGCCC-AGGCTC
* * * * * *
30039960 AGGGTAAGAGATTGAATGGCT-GTAATCTGCCCCAGGTTT
1 GGGGTAAGAGATTGACT-GATGGTGATCTG-CCCAGGCTC
* * *
30039999 GAGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTG-CCCAGGCTC
* * *
30040038 GGGGTAAAAGATCGA---ATGGCTGCAATCTGCTTCAGGCTC
1 GGGGTAAGAGATTGACTGATGG-TG--ATCTGC-CCAGGCTC
* *
30040077 AGGGTAAGAGATTGGCTGATGGTGATCTGCCCAGGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGCCCAGGCTC
* *
30040115 GGGGTAAGAGATTGACTGATGGTGATTTGCCCCAAGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTG-CCCAGGCTC
** * * * *
30040154 GGGGTAAGAGATCAAATGGAT-GTAATTTGCCTCAAGCTC
1 GGGGTAAGAGATTGACT-GATGGTGATCTGCC-CAGGCTC
* * * *
30040193 GAGGTAAAAGATTGGCTGATGGTGATCTGCCTCAAGCTC
1 GGGGTAAGAGATTGACTGATGGTGATCTGCC-CAGGCTC
30040232 GGGGTAAGAGAT
1 GGGGTAAGAGAT
30040244 CAGAATCTTC
Statistics
Matches: 488, Mismatches: 114, Indels: 66
0.73 0.17 0.10
Matches are distributed among these distances:
36 3 0.01
37 3 0.01
38 56 0.11
39 396 0.81
40 23 0.05
41 3 0.01
42 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (38 bp):
GGGGTAAGAGATTGACTGATGGTGATCTGCCCAGGCTC
Found at i:30039805 original size:117 final size:116
Alignment explanation
Indices: 30039644--30040243 Score: 650
Period size: 117 Copynumber: 5.1 Consensus size: 116
30039634 TCAGCCCCAA
* * * * *
30039644 GCTCGGAGTAAGAGATTGGCTGATGGTGATTTGCACCAGGCTCGGGATAAGAGATCGAATAGTTT
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGTTT
* * * *
30039709 CAATCTGCCCCATGATCGGGGTAAGAGATTTGCTGATGGTGATCTGCCCTTG
66 -AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAG
* * *
30039761 GCTTGGGGTAAGAGATTTGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGGTTA
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGTT-
* * * ** **
30039826 TAATCTACCCCAGGCTCGGGGTAAGAGATCGAATGACT-GCAATCTGCCCTAG
65 TAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGA-TGGTGATCTGCCCTAG
* * *
30039878 GCTCGGGGTAAGAGATTGGTTGATGGTGATCTACCTCAGGCTCGGGGTAAGAGATCGAATGGTTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGTT-
* * ** * * *
30039943 TAATCTGCCCTAAGCTCAGGGTAAGAGATTGAATGGCT-GTAATCTGCCCCAG
65 TAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCT-GATGGTGATCTGCCCTAG
* * * * * *
30039995 GTTTGAGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGCTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGG-TT
* ** * *
30040060 CAATCTGCTTCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCC-AG
65 TAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAG
* * * * *
30040111 GCTCGGGGTAAGAGATTGACTGATGGTGATTTGCCCCAAGCTCGGGGTAAGAGATCAAATGGATG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGG-TT
* * * * *
30040176 TAATTTGCCTCAAGCTCGAGGTAAAAGATTGGCTGATGGTGATCTG-CCTCAA
65 TAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCT-AG
30040228 GCTCGGGGTAAGAGAT
1 GCTCGGGGTAAGAGAT
30040244 CAGAATCTTC
Statistics
Matches: 407, Mismatches: 69, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
115 2 0.00
116 98 0.24
117 303 0.74
118 4 0.01
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (116 bp):
GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGTTT
AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAG
Found at i:30051989 original size:97 final size:97
Alignment explanation
Indices: 30051823--30052016 Score: 262
Period size: 97 Copynumber: 2.0 Consensus size: 97
30051813 AACCTTGAAA
** * * *
30051823 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAGTCGCGCCTGGTAAGTTAAGACACAAATTTCCA
1 AAGGGTATTCGATTATCCCAATTTGAAAAAAAATCGCGCCTAGTAAGTTAAGACACAAATTTCCA
*
30051888 AAACTCGAGATAAAGAAATATTGCCTCGATTT
66 AAACTCGAAATAAAGAAATATTGCCTCGATTT
* * * * **
30051920 AAGGGTATTCGATTATCCCAATTTTAAAAAAAATCGCGCCTATTAAGTTAAGGCACGAATTTTTA
1 AAGGGTATTCGATTATCCCAATTTGAAAAAAAATCGCGCCTAGTAAGTTAAGACACAAATTTCCA
* *
30051985 AAACTCGAAATAAAGGAATATTGTCTCGATTT
66 AAACTCGAAATAAAGAAATATTGCCTCGATTT
30052017 TAAATATTTT
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
97 83 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (97 bp):
AAGGGTATTCGATTATCCCAATTTGAAAAAAAATCGCGCCTAGTAAGTTAAGACACAAATTTCCA
AAACTCGAAATAAAGAAATATTGCCTCGATTT
Found at i:30052363 original size:30 final size:29
Alignment explanation
Indices: 30052321--30052518 Score: 208
Period size: 29 Copynumber: 6.8 Consensus size: 29
30052311 TTGGAAAGTT
* * *
30052321 TTAGA-GGTAAAAATGTCATTTTAGGAAAA
1 TTAGAGGGTAAAAATGTGATTTTTGG-AAG
30052350 TTAG-GGGTAAAAAATGTGATTTTTGGAAG
1 TTAGAGGGT-AAAAATGTGATTTTTGGAAG
*
30052379 TTCGAGGGTAAAAATGTGATTTTTGGAAG
1 TTAGAGGGTAAAAATGTGATTTTTGGAAG
* *
30052408 TTAGAGGGTAAAAATATAATTTTTGGAAG
1 TTAGAGGGTAAAAATGTGATTTTTGGAAG
*
30052437 TTTA-AGGGTAAAAATGTAATTTTTGAGAAG
1 -TTAGAGGGTAAAAATGTGATTTTTG-GAAG
* * *
30052467 TTCGAGGG-CAAAATGTAATTTTTGAGAAG
1 TTAGAGGGTAAAAATGTGATTTTTG-GAAG
*
30052496 TTCA-AGGGTCAAAATGTGATTTT
1 TT-AGAGGGTAAAAATGTGATTTT
30052519 GAAAAAGTGT
Statistics
Matches: 149, Mismatches: 12, Indels: 15
0.85 0.07 0.09
Matches are distributed among these distances:
29 106 0.71
30 43 0.29
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (29 bp):
TTAGAGGGTAAAAATGTGATTTTTGGAAG
Found at i:30052393 original size:59 final size:58
Alignment explanation
Indices: 30052299--30052550 Score: 219
Period size: 59 Copynumber: 4.3 Consensus size: 58
30052289 AGTTTGGGTT
** *
30052299 TAAAAA-ATAA-TTTTGGAAAGTTTTAGAGGTAAAAATGTCATTTTAGGAAAATTAG-GGG
1 TAAAAATATAATTTTTGG-AAGTTCAAG-GGTAAAAATGTGATTTT-GGAAAATTAGAGGG
* * * *
30052357 TAAAAAATGTGATTTTTGGAAGTTCGAGGGTAAAAATGTGATTTTTGG-AAGTTAGAGGG
1 T-AAAAATATAATTTTTGGAAGTTCAAGGGTAAAAATGTGA-TTTTGGAAAATTAGAGGG
* * * * *
30052416 TAAAAATATAATTTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGAGAAGTTCGAGGG
1 TAAAAATATAATTTTTGGAAGTTCAAGGGTAAAAATGTGATTTTGGA-AAATTAGAGGG
* * * *
30052475 -CAAAATGTAATTTTTGAGAAGTTCAAGGGTCAAAATGTGATTTTGAAAAAGTGTAG-GGG
1 TAAAAATATAATTTTTG-GAAGTTCAAGGGTAAAAATGTGATTTTGGAAAA-T-TAGAGGG
* *
30052534 TCAAAATATGATTTTTG
1 TAAAAATATAATTTTTG
30052551 AACAGTTTAT
Statistics
Matches: 159, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
57 5 0.03
58 57 0.36
59 62 0.39
60 29 0.18
61 6 0.04
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (58 bp):
TAAAAATATAATTTTTGGAAGTTCAAGGGTAAAAATGTGATTTTGGAAAATTAGAGGG
Found at i:30052520 original size:58 final size:59
Alignment explanation
Indices: 30052326--30052518 Score: 232
Period size: 58 Copynumber: 3.3 Consensus size: 59
30052316 AAGTTTTAGA
* * * * *
30052326 GGTAAAAATGTCATTTTAG-GAAAATTAG-GGGTAAAAAATGTGATTTTTGGAAGTTCGAG
1 GGTAAAAATGTGATTTTTGAG-AAGTTAGAGGGT-AAAAATGTAATTTTTGGAAGTTCAAG
* *
30052385 GGTAAAAATGTGATTTTTG-GAAGTTAGAGGGTAAAAATATAATTTTTGGAAGTTTAAG
1 GGTAAAAATGTGATTTTTGAGAAGTTAGAGGGTAAAAATGTAATTTTTGGAAGTTCAAG
* * *
30052443 GGTAAAAATGTAATTTTTGAGAAGTTCGAGGG-CAAAATGTAATTTTTGAGAAGTTCAAG
1 GGTAAAAATGTGATTTTTGAGAAGTTAGAGGGTAAAAATGTAATTTTTG-GAAGTTCAAG
*
30052502 GGTCAAAATGTGATTTT
1 GGTAAAAATGTGATTTT
30052519 GAAAAAGTGT
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
58 60 0.51
59 57 0.49
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (59 bp):
GGTAAAAATGTGATTTTTGAGAAGTTAGAGGGTAAAAATGTAATTTTTGGAAGTTCAAG
Found at i:30054377 original size:18 final size:17
Alignment explanation
Indices: 30054301--30054373 Score: 101
Period size: 17 Copynumber: 4.2 Consensus size: 17
30054291 GACATTATTT
*
30054301 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
30054318 TTTTAAATTTAAAAATAA
1 ATTTAAATTT-AAAATAA
*
30054336 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAATAA
*
30054353 ATTTAAACTTAAAATAA
1 ATTTAAATTTAAAATAA
30054370 ATTT
1 ATTT
30054374 TAAAAAATGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
17 34 0.69
18 15 0.31
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:30054377 original size:35 final size:35
Alignment explanation
Indices: 30054301--30054373 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
30054291 GACATTATTT
* * * *
30054301 ATTTAAATTTAGAATAATTTTAAATTTAAAAATAA
1 ATTTAAATTTAAAACAAATTTAAACTTAAAAATAA
30054336 ATTTAAATTTAAAACAAATTTAAACTT-AAAATAA
1 ATTTAAATTTAAAACAAATTTAAACTTAAAAATAA
30054370 ATTT
1 ATTT
30054374 TAAAAAATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 11 0.32
35 23 0.68
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (35 bp):
ATTTAAATTTAAAACAAATTTAAACTTAAAAATAA
Found at i:30056350 original size:90 final size:90
Alignment explanation
Indices: 30056146--30056361 Score: 210
Period size: 90 Copynumber: 2.4 Consensus size: 90
30056136 CTAAGAATGT
* * * *
30056146 AAAAA-GCTCTCAAATTTTTTC-AAAAAAAGCAATTAAGCACTTGTTTCTTTTTTGTACTCATTT
1 AAAAAGGCTCT-AAAATTTTTCAAAAAAAAGCAATTAAGCACTTGTTTCATTTTTGCACTCAATT
* * *
30056209 GGGTACTTGAACTTTTAAAATACATC
65 GAGTACTTAAACTTTCAAAATACATC
* *** *
30056235 AAAAAGGCCCTCAAAA-TTAAAAAAAAAAAGCAATTAAGC-CTCTGCTTT-ATTTTTGCACTTAA
1 AAAAAGGCTCT-AAAATTTTTCAAAAAAAAGCAATTAAGCACT-TG-TTTCATTTTTGCACTCAA
**
30056297 TTGAGTACTTAAACTTTCAAAATGTATC
63 TTGAGTACTTAAACTTTCAAAATACATC
30056325 -AAAAGGCTCTAAAACTTTTTCAAAAAAAAAGCAATTA
1 AAAAAGGCTCTAAAA-TTTTTC-AAAAAAAAGCAATTA
30056362 TGCCCTTGAT
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
88 4 0.04
89 18 0.18
90 62 0.61
91 18 0.18
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (90 bp):
AAAAAGGCTCTAAAATTTTTCAAAAAAAAGCAATTAAGCACTTGTTTCATTTTTGCACTCAATTG
AGTACTTAAACTTTCAAAATACATC
Found at i:30061616 original size:29 final size:28
Alignment explanation
Indices: 30061583--30061676 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
30061573 AAATCGAGGT
30061583 TAAAATGAGGTTTTGGAGAGTTCGAGGGG
1 TAAAATGAGGTTTTGGAGAGTTCG-GGGG
* ** * ** *
30061612 TAAAACGATAATTTTGGTGAAATCGGGGT
1 TAAAATGA-GGTTTTGGAGAGTTCGGGGG
*
30061641 TAAAAATG-GGATTTTGGAAAGTTCGGGGG
1 T-AAAATGAGG-TTTTGGAGAGTTCGGGGG
30061670 TAAAATG
1 TAAAATG
30061677 GTAATTTTTG
Statistics
Matches: 47, Mismatches: 15, Indels: 7
0.68 0.22 0.10
Matches are distributed among these distances:
28 6 0.13
29 25 0.53
30 16 0.34
ACGTcount: A:0.33, C:0.04, G:0.34, T:0.29
Consensus pattern (28 bp):
TAAAATGAGGTTTTGGAGAGTTCGGGGG
Found at i:30061624 original size:59 final size:59
Alignment explanation
Indices: 30061522--30061863 Score: 464
Period size: 59 Copynumber: 5.8 Consensus size: 59
30061512 GAAAATTTAG
* * *
30061522 GGTT-AAAATGGGATTTT-AAAAGGTTCGGGGGTAAAATGGTAATTTTTAGTAAAATCGA
1 GGTTAAAAATGGGATTTTGGAAA-GTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
* * * *
30061580 GGTT-AAAATGAGG-TTTTGGAGAGTTCGAGGGGTAAAACGATAA-TTTTGGTGAAATCGG
1 GGTTAAAAATG-GGATTTTGGAAAGTTCG-GGGGTAAAATGGTAATTTTTGGTGAAATCGA
*
30061638 GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACCG-
1 GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
**
30061696 GGATTAAAAATGGGATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCGA
1 GG-TTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
* * *
30061756 GGTTAAAAA-GGGATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATCGG
1 GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
* *
30061814 GGTTAAAAATAGGATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
1 GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGG
30061864 ATAGTCCAGG
Statistics
Matches: 252, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
58 105 0.42
59 145 0.58
60 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.32
Consensus pattern (59 bp):
GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
Found at i:30061761 original size:176 final size:176
Alignment explanation
Indices: 30061526--30061863 Score: 520
Period size: 176 Copynumber: 1.9 Consensus size: 176
30061516 ATTTAGGGTT
* *
30061526 AAAATGGGATTTTAAAAGGTTCGGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTTAAAATGA
1 AAAATGGGATTTTAAAAGGTTCAGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTTAAAAAG-
* * *
30061591 GG-TTTTGGAGAGTTCGAGGGGTAAAACGATAA-TTTTGGTGAAATCGGGGTTAAAAATGGGATT
65 GGATTTTGAAAAGTTCGA-GGGTAAAACGATAATTTTTGGTGAAATCGGGGTTAAAAATAGGATT
30061654 TTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACCGGGATTA
129 TTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACCGGGATTA
* * * *
30061702 AAAATGGGATTTTGGAAA-GTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAAG
1 AAAATGGGATTTT-AAAAGGTTCAGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTTAAAAAG
* *
30061766 GGATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGGATTT
65 GGATTTTGAAAAGTTCGAGGGTAAAACGATAATTTTTGGTGAAATCGGGGTTAAAAATAGGATTT
*
30061831 TGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
130 TGGAAAGTTCGGGGGTAAAATGGTAATTTTTGG
30061864 ATAGTCCAGG
Statistics
Matches: 147, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
175 14 0.10
176 130 0.88
177 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.32
Consensus pattern (176 bp):
AAAATGGGATTTTAAAAGGTTCAGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTTAAAAAGG
GATTTTGAAAAGTTCGAGGGTAAAACGATAATTTTTGGTGAAATCGGGGTTAAAAATAGGATTTT
GGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACCGGGATTA
Found at i:30061861 original size:117 final size:117
Alignment explanation
Indices: 30061522--30061863 Score: 485
Period size: 117 Copynumber: 2.9 Consensus size: 117
30061512 GAAAATTTAG
* * * *
30061522 GGTTAAAATGGGATTTT-AAAAGGTTCGGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTT-A
1 GGTTAAAAAGGGATTTTGAAAA-GTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAA
* * * * *
30061585 AAATGAGG-TTTTGGAGAGTTCGAGGGGTAAAACGATAA-TTTTGGTGAAATCGG
65 AAAT-AGGATTTTGGAAAGTTTG-GGGGTAAAATGGTAATTTTTGGTGAAATCGA
* * *
30061638 GGTTAAAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAACCGGGATTAA
1 GGTTAAAAA-GGGATTTTGAAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAA
* *
30061703 AAATGGGATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCGA
65 AAATAGGATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
*
30061756 GGTTAAAAAGGGATTTTGAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAA
1 GGTTAAAAAGGGATTTTGAAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAA
30061821 AATAGGATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
66 AATAGGATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
30061864 ATAGTCCAGG
Statistics
Matches: 201, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
116 8 0.04
117 151 0.75
118 42 0.21
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.32
Consensus pattern (117 bp):
GGTTAAAAAGGGATTTTGAAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAA
AATAGGATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCGA
Found at i:30063753 original size:17 final size:15
Alignment explanation
Indices: 30063714--30063757 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
30063704 ATTTAATCTT
30063714 AAATTTAAATTTATA
1 AAATTTAAATTTATA
30063729 ATAGATTTAAATTGTATA
1 A-A-ATTTAAATT-TATA
30063747 CAAATTTAAAT
1 -AAATTTAAAT
30063758 CCAAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.04
16 1 0.04
17 17 0.68
18 5 0.20
19 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (15 bp):
AAATTTAAATTTATA
Found at i:30066124 original size:27 final size:27
Alignment explanation
Indices: 30066088--30066140 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
30066078 AACAATTCAA
* *
30066088 TAATATAAATAGCATAAAATATTAAATT
1 TAATATAAATAACAT-AAATAATAAATT
30066116 TAAT-TAAATAACATAAATAATAAAT
1 TAATATAAATAACATAAATAATAAAT
30066141 AAATTCGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 10 0.43
27 9 0.39
28 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (27 bp):
TAATATAAATAACATAAATAATAAATT
Found at i:30066208 original size:55 final size:55
Alignment explanation
Indices: 30066148--30066288 Score: 139
Period size: 55 Copynumber: 2.6 Consensus size: 55
30066138 AATAAATTCG
*
30066148 AAAAAAAAATATTTTGGGGTTTGAGAGGAAGTAACAA-TTTTAGG-GAAAAGCAAA
1 AAAAAAAAATATTTTGGGGTTTGAGAGGAAGTAA-AACTTTTAGGAGAAAAACAAA
** * * *
30066202 AGAAAAAAGTTTTTTTGGGG-TTG-GAGGAAGTAAAACTTTTGGGAGAAAAATAAA
1 A-AAAAAAAATATTTTGGGGTTTGAGAGGAAGTAAAACTTTTAGGAGAAAAACAAA
* * *
30066256 AAGAAAAAA-GTTTTGGGGATTTGAGGGGAAGTA
1 AAAAAAAAATATTTTGGGG-TTTGAGAGGAAGTA
30066289 TTTTGGGAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
52 10 0.14
53 21 0.30
54 16 0.23
55 23 0.33
ACGTcount: A:0.44, C:0.02, G:0.28, T:0.26
Consensus pattern (55 bp):
AAAAAAAAATATTTTGGGGTTTGAGAGGAAGTAAAACTTTTAGGAGAAAAACAAA
Found at i:30066234 original size:53 final size:57
Alignment explanation
Indices: 30066159--30066269 Score: 151
Period size: 55 Copynumber: 2.0 Consensus size: 57
30066149 AAAAAAAATA
*
30066159 TTTTGGGGTTTGAGAGGAAGTAACAA-TTTTAGG-G-AAAAGCAAAAGAAAAAAGTTT
1 TTTTGGGGTTTGAGAGGAAGTAA-AACTTTTAGGAGAAAAAGAAAAAGAAAAAAGTTT
* *
30066214 TTTTGGGG-TTG-GAGGAAGTAAAACTTTTGGGAGAAAAATAAAAAGAAAAAAGTTT
1 TTTTGGGGTTTGAGAGGAAGTAAAACTTTTAGGAGAAAAAGAAAAAGAAAAAAGTTT
30066269 T
1 T
30066270 GGGGATTTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
52 2 0.04
53 16 0.32
54 4 0.08
55 28 0.56
ACGTcount: A:0.42, C:0.03, G:0.27, T:0.28
Consensus pattern (57 bp):
TTTTGGGGTTTGAGAGGAAGTAAAACTTTTAGGAGAAAAAGAAAAAGAAAAAAGTTT
Found at i:30068664 original size:15 final size:16
Alignment explanation
Indices: 30068627--30068669 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
30068617 TTTAGTCCTA
30068627 TATTT-TTTATTCATTT
1 TATTTATTTA-TCATTT
30068643 TATTTTATTTATC-TTT
1 TA-TTTATTTATCATTT
30068659 TATTTATTTAT
1 TATTTATTTAT
30068670 TTACTTCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.36
16 7 0.28
17 5 0.20
18 4 0.16
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTTATTTATCATTT
Found at i:30069049 original size:3 final size:3
Alignment explanation
Indices: 30069038--30069084 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
30069028 ATTGCCATGA
* *
30069038 ATT AAT ATT ATT AAT ATT ATT ATT ATT -TAT ATT ATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
30069082 ATT
1 ATT
30069085 TGATTGTAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 3 0.08
3 33 0.89
4 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:30069620 original size:18 final size:18
Alignment explanation
Indices: 30069597--30069631 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
30069587 TATAAATTAA
30069597 AAAGTCCAATTACAAAAG
1 AAAGTCCAATTACAAAAG
30069615 AAAGTCCAATTACAAAA
1 AAAGTCCAATTACAAAA
30069632 TATAGGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (18 bp):
AAAGTCCAATTACAAAAG
Found at i:30070872 original size:22 final size:23
Alignment explanation
Indices: 30070838--30070891 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
30070828 ACAATAAAAG
30070838 AAAAAAGGATTTT-AAA-AAGGAA
1 AAAAAAGGATTTTCAAAGAA-GAA
* *
30070860 AAAAATGGGTTTTCAAAGAAGAA
1 AAAAAAGGATTTTCAAAGAAGAA
30070883 AAAAAAGGA
1 AAAAAAGGA
30070892 ACAAAATCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
23 13 0.50
24 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.17
Consensus pattern (23 bp):
AAAAAAGGATTTTCAAAGAAGAA
Found at i:30071577 original size:30 final size:29
Alignment explanation
Indices: 30071535--30071879 Score: 129
Period size: 30 Copynumber: 11.8 Consensus size: 29
30071525 CCCAAACTTT
30071535 CCAAAATT-CCATTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTAACCCCGATTTCA
*** *
30071563 CCAAAAATTACCATTTT-ACAATAGAATTT-T
1 CC-AAAATTACCATTTTAAC-CCCG-ATTTCA
*
30071593 CCAAAA-TCCCATTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTAACCCCGATTTCA
*
30071621 CCAAAAATTACCATTTT-ACCCCTTAAACTTT--
1 CC-AAAATTACCATTTTAACCCC---GA-TTTCA
*
30071652 CCAAAATT-CCATTTTTAACCCCGATTGCA
1 CCAAAATTACCA-TTTTAACCCCGATTTCA
*
30071681 TCCAAAATTACCATTTT-ACCCTCGAACCTT--
1 -CCAAAATTACCATTTTAACCC-CG-A-TTTCA
* * * *
30071711 CTAAAATT-CTATTTTTAACCTCGATTTTA
1 CCAAAATTACCA-TTTTAACCCCGATTTCA
* *
30071740 TCAAAAATTACCATTTT-ACCCCTAAACTTT--
1 -CCAAAATTACCATTTTAACCCC--GA-TTTCA
*
30071770 CCAAAATT-CTATTTTTAACCCCGATTTCA
1 CCAAAATTACCA-TTTTAACCCCGATTTCA
*
30071799 CTAAAAATTACCATTTT-ACCCTCGAACTTT--
1 C-CAAAATTACCATTTTAACCC-CG-A-TTTCA
* * * *
30071829 CCAAAATT-CCATTTTTAATCTCAATTTCT
1 CCAAAATTACCA-TTTTAACCCCGATTTCA
*
30071858 CTGAAAATTACCATTTT-ACCCC
1 C-CAAAATTACCATTTTAACCCC
30071880 TAAATTTTCT
Statistics
Matches: 237, Mismatches: 35, Indels: 89
0.66 0.10 0.25
Matches are distributed among these distances:
27 14 0.06
28 24 0.10
29 78 0.33
30 86 0.36
31 24 0.10
32 8 0.03
33 3 0.01
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (29 bp):
CCAAAATTACCATTTTAACCCCGATTTCA
Found at i:30071747 original size:59 final size:59
Alignment explanation
Indices: 30071518--30071967 Score: 497
Period size: 59 Copynumber: 7.6 Consensus size: 59
30071508 AAAAATTATT
*
30071518 TTTTGACCC-CAAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCACCAAAAATTACCA
1 TTTT-ACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
** * * *
30071576 TTTTACAAT-AGAATTTTCCAAAATCCCA-TTTTAACCCCGATTTCACCAAAAATTACCA
1 TTTTACCCTCA-AACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
* * *
30071634 TTTTACCCCTTAAACTTTCCAAAATTCCATTTTTAACCCCGATTGCATCCAAAATTACCA
1 TTTTA-CCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
* * * * * *
30071694 TTTTACCCTCGAACCTTCTAAAATTCTATTTTTAACCTCGATTTTATCAAAAATTACCA
1 TTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
*
30071753 TTTTACCC-CTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA-CTAAAAATTACCA
1 TTTTACCCTC-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATC-AAAAATTACCA
* * * * *
30071812 TTTTACCCTCGAACTTTCCAAAATTCCATTTTTAATCTCAATTTC-TCTGAAAATTACCA
1 TTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATC-AAAAATTACCA
* *
30071871 TTTTACCC-CTAAATTTTCTAAAA-TCTCATTTTTAACCCCGATTTCATCAAAAATTACCA
1 TTTTACCCTC-AAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCATCAAAAATTACCA
* * * * *
30071930 CTTTACCCTCTAA-TCTTCTAAAATCCCATTCTTAACCC
1 TTTTACCCTCAAACT-TTCCAAAATTCCATTTTTAACCC
30071968 TAAATTTTCC
Statistics
Matches: 335, Mismatches: 42, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
57 3 0.01
58 60 0.18
59 234 0.70
60 38 0.11
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.37
Consensus pattern (59 bp):
TTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
Found at i:30071829 original size:177 final size:177
Alignment explanation
Indices: 30071518--30071967 Score: 547
Period size: 177 Copynumber: 2.5 Consensus size: 177
30071508 AAAAATTATT
* * * *
30071518 TTTTGACCCC-AAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCACCAAAAATTACCATTTTA
1 TTTT-ACCCCTAAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCATTTTA
** * *
30071581 -CAATAGAATTTTCCAAAATCCCATTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCTT
65 CCCCTA-AACTTTCCAAAATCCCATTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCTC
*
30071645 AAACTTTCCAAAATTCCATTTTTAACCCCGATTGCATC-CAAAATTACCA
129 AAACTTTCCAAAATTCCATTTTTAACCCCAATTGC-TCTCAAAATTACCA
* * *
30071694 TTTTA-CCCTCGAACCTTCTAAAATTCTATTTTTAACCTCGATTTTATCAAAAATTACCATTTTA
1 TTTTACCCCT-AAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCATTTTA
* * *
30071758 CCCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACTAAAAATTACCATTTTA-CCCTC
65 CCCCTAAACTTTCCAAAATCCCA-TTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCTC
* * * * *
30071822 GAACTTTCCAAAATTCCATTTTTAATCTCAATTTCTCTGAAAATTACCA
129 AAACTTTCCAAAATTCCATTTTTAACCCCAATTGCTCTCAAAATTACCA
** *
30071871 TTTTACCCCTAAATTTTCTAAAA-TCTCATTTTTAACCCCGATTTCATCAAAAATTACCACTTTA
1 TTTTACCCCTAAACCTTCTAAAATTCT-ATTTTTAACCCCGATTTCATCAAAAATTACCATTTTA
* *
30071935 CCCTCTAATC-TTCTAAAATCCCATTCTTAACCC
65 CCC-CTAAACTTTCCAAAATCCCATT-TTAACCC
30071968 TAAATTTTCC
Statistics
Matches: 234, Mismatches: 30, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
174 3 0.01
175 1 0.00
176 25 0.11
177 159 0.68
178 46 0.20
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.37
Consensus pattern (177 bp):
TTTTACCCCTAAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCATTTTAC
CCCTAAACTTTCCAAAATCCCATTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCTCAA
ACTTTCCAAAATTCCATTTTTAACCCCAATTGCTCTCAAAATTACCA
Found at i:30071996 original size:118 final size:118
Alignment explanation
Indices: 30071505--30071985 Score: 550
Period size: 118 Copynumber: 4.1 Consensus size: 118
30071495 CCCTAAACTA
** *
30071505 TCCAAAAATTA-TTTTTTGACCCC-AAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCACCAA
1 TCCAAAAATTACCATTTT-ACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAA
** * * *
30071567 AAATTACCATTTTACAATAGAATTTTCCAAAATCCCA-TTTTAACCC-CGATTT
65 AAATTACCATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCCTCAATTT
* * *
30071619 CACCAAAAATTACCATTTTACCCCTTAAACTTTCCAAAATTCCATTTTTAACCCCGATTGCATCC
1 -TCCAAAAATTACCATTTTACCCC-TAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCA
* * * * *
30071684 AAAATTACCATTTTACCCTCGAACCTTCTAAAATTCTATTTTTAA-CCTCGATTT
64 AAAATTACCATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCCTCAATTT
* *
30071738 TATCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA-CTA
1 T-CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATC-A
* *
30071802 AAAATTACCATTTTACCCTCGAA-CTTTCCAAAATTCCATTTTTAA-TCTCAATTT
64 AAAATTACCATTTTACCCTCGAATC-TTCCAAAATCCCATTTTTAACCCTCAATTT
** * *
30071856 CTCTGAAAATTACCATTTTACCCCTAAATTTTCTAAAA-TCTCATTTTTAACCCCGATTTCATCA
1 -TCCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCATCA
* * * * *
30071920 AAAATTACCACTTTACCCTCTAATCTTCTAAAATCCCATTCTTAACCCTAAATTT
64 AAAATTACCATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCCTCAATTT
*
30071975 TCCTAAAATTA
1 TCCAAAAATTA
30071986 TATTTTTACC
Statistics
Matches: 314, Mismatches: 38, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
115 15 0.05
116 4 0.01
117 22 0.07
118 230 0.73
119 43 0.14
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (118 bp):
TCCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCATCAAA
AATTACCATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCCTCAATTT
Found at i:30072020 original size:177 final size:176
Alignment explanation
Indices: 30071518--30072020 Score: 463
Period size: 177 Copynumber: 2.8 Consensus size: 176
30071508 AAAAATTATT
* * * * *
30071518 TTTTGACCC-CAAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCACCAAAAATTACCATTTTA
1 TTTT-ACCCTCAAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCACTTTA
** * ** *
30071581 -CAATAGAATTTTCCAAAATCCCATT-TTAACCCCGATTTCACCAAAAATTACCATTTTACCCCT
65 CCCCTA-AACTTTCCAAAATCCCATTCTTAACCCAAATTTCACTAAAAATTACCATTTTA-CCCT
** * * * * * * *
30071644 TAAACTTTCCAAAATTCCATTTTTAACCCCGATTGCATC-CAAAATTACCA
128 CGAAC-GTCAAAAATTCCATTTTTAATCTCAATTTC-TCTGAAAATTACCA
* * * *
30071694 TTTTACCCTCGAACCTTCTAAAATTCTATTTTTAACCTCGATTTTATCAAAAATTACCATTTTAC
1 TTTTACCCTCAAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCACTTTAC
* * * **
30071759 CCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACTAAAAATTACCATTTTACCCTCGA
66 CCCTAAACTTTCCAAAATCCCATTCTTAACCCAAATTTCACTAAAAATTACCATTTTACCCTCGA
* *
30071824 ACTTTCCAAAATTCCATTTTTAATCTCAATTTCTCTGAAAATTACCA
131 AC-GTCAAAAATTCCATTTTTAATCTCAATTTCTCTGAAAATTACCA
**
30071871 TTTTACCC-CTAAATTTTCTAAAA-TCTCATTTTTAACCCCGATTTCATCAAAAATTACCACTTT
1 TTTTACCCTC-AAACCTTCTAAAATTCT-ATTTTTAACCCCGATTTCATCAAAAATTACCACTTT
* * *
30071934 ACCCTCTAATC-TTCTAAAATCCCATTCTTAACCCTAAATTTTC-CT-AAAATTA-TATTTTTAC
64 ACCC-CTAAACTTTCCAAAATCCCATTCTTAACCC-AAA-TTTCACTAAAAATTACCA-TTTTAC
*
30071995 CCTTGAGA-GTCAAAAATTACCATTTT
125 CCTCGA-ACGTCAAAAATT-CCATTTT
30072021 GCCCCGGGCG
Statistics
Matches: 277, Mismatches: 37, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
175 4 0.01
176 34 0.12
177 191 0.69
178 44 0.16
179 4 0.01
ACGTcount: A:0.33, C:0.26, G:0.03, T:0.37
Consensus pattern (176 bp):
TTTTACCCTCAAACCTTCTAAAATTCTATTTTTAACCCCGATTTCATCAAAAATTACCACTTTAC
CCCTAAACTTTCCAAAATCCCATTCTTAACCCAAATTTCACTAAAAATTACCATTTTACCCTCGA
ACGTCAAAAATTCCATTTTTAATCTCAATTTCTCTGAAAATTACCA
Found at i:30073120 original size:13 final size:13
Alignment explanation
Indices: 30073099--30073131 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
30073089 GAAGACTAAC
30073099 TTTTT-AAAAACA
1 TTTTTAAAAAACA
30073111 TTTTTAAAAAACA
1 TTTTTAAAAAACA
30073124 TTTTTAAA
1 TTTTTAAA
30073132 TGTTTTGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTTTAAAAAACA
Found at i:30084505 original size:200 final size:199
Alignment explanation
Indices: 30084123--30084716 Score: 967
Period size: 200 Copynumber: 3.0 Consensus size: 199
30084113 CAAAATGGTA
* * * * *
30084123 AGGCGGTAATCTACCTGATGAGATACAGAGAAGAACACCAACTCAGCGCTCAACACAAGCAAATC
1 AGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAAATC
* * *
30084188 TT-GAATCCAGCTTCCTAATGAGACACTGAGAAGCAGG-CGAACCAATAAAAAGGTTAGCTTCCT
66 TTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCT
* *
30084251 GATGAGACACAGAGAAGTGGACCAAATTCATCTTCTTGAGGAGATCCAGAGAAGCGAATTAAAAC
131 GATGAGACACAGAGAAGTGGACC-AATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAAC
30084316 AACCG
195 AACCG
30084321 AGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAAATC
1 AGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAAATC
* * *
30084386 TTCGAACCCAGCTTCCTGATGAGGCACTGAGAAGCGGGTCGAAGCAATAAAATGGTTAGCTTCCT
66 TTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCT
* * *
30084451 GATGAGATACAAAGAAGTGGACCAGATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATCAAAAC
131 GATGAGACACAGAGAAGTGGACCA-ATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAAC
*
30084516 AAGCG
195 AACCG
* *
30084521 AGGCGATCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACGCGAGCAAATC
1 AGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAAATC
*
30084586 TTCGAACCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCT
66 TTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCT
30084651 GATGAGACACAGAGAAGTGGACCAATTTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAAC
131 GATGAGACACAGAGAAGTGGACCAA-TTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAAC
30084716 A
195 A
30084717 GGTGATTGCA
Statistics
Matches: 366, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
198 62 0.17
199 33 0.09
200 271 0.74
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (199 bp):
AGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAAATC
TTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCT
GATGAGACACAGAGAAGTGGACCAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACA
ACCG
Found at i:30087128 original size:58 final size:58
Alignment explanation
Indices: 30087056--30087327 Score: 298
Period size: 59 Copynumber: 4.6 Consensus size: 58
30087046 AAATTATATT
*
30087056 TTTTACCCCCAAACTTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCA
1 TTTTACCCCTAAACTTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCA
* ** * *
30087114 TTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTGCACCCAAAATTACCA
1 TTTTACCCCTAAACTTTCTAAAATTCCA-TTTTAACCCTAATTTCACCAAAAATTACCA
* * * * * *
30087173 TTTTACCACC-GAACCTTCTAAAATTCTATTTTAACCTTAATTTTATCAAAAATTACCA
1 TTTTACC-CCTAAACTTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCA
* * * *
30087231 TTTTACCCCTGAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
1 TTTTACCCCTAAACTTTCTAAAATTCCA-TTTTAACCCTAATTTCACCAAAAATTACCA
* * *
30087290 CTTTA-CCTTCAAA-TCTTCTAAAATCCCATTCTTAACCC
1 TTTTACCCCT-AAACT-TTCTAAAATTCCATT-TTAACCC
30087328 CAAAATTTCT
Statistics
Matches: 178, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
57 2 0.01
58 76 0.43
59 98 0.55
60 2 0.01
ACGTcount: A:0.33, C:0.29, G:0.02, T:0.35
Consensus pattern (58 bp):
TTTTACCCCTAAACTTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCA
Found at i:30087262 original size:117 final size:117
Alignment explanation
Indices: 30087056--30087327 Score: 382
Period size: 117 Copynumber: 2.3 Consensus size: 117
30087046 AAATTATATT
* *
30087056 TTTTACCCCCAAACTTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCATTTTACC
1 TTTTACCACCAAACCTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCATTTTACC
* *
30087121 CCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTGCACCCAAAATTACCA
66 CCTAAACTTTCCAAAATCCCATTTTTAACCCCGATTGCACCAAAAATTACCA
* * * * *
30087173 TTTTACCACCGAACCTTCTAAAATTCTATTTTAACCTTAATTTTATCAAAAATTACCATTTTACC
1 TTTTACCACCAAACCTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCATTTTACC
* * *
30087238 CCTGAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
66 CCTAAACTTTCCAAAATCCCATTTTTAACCCCGATTGCACCAAAAATTACCA
* ** * *
30087290 CTTTACCTTCAAATCTTCTAAAATCCCATTCTTAACCC
1 TTTTACCACCAAACCTTCTAAAATTCCATT-TTAACCC
30087328 CAAAATTTCT
Statistics
Matches: 134, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
117 128 0.96
118 6 0.04
ACGTcount: A:0.33, C:0.29, G:0.02, T:0.35
Consensus pattern (117 bp):
TTTTACCACCAAACCTTCTAAAATTCCATTTTAACCCTAATTTCACCAAAAATTACCATTTTACC
CCTAAACTTTCCAAAATCCCATTTTTAACCCCGATTGCACCAAAAATTACCA
Found at i:30089346 original size:13 final size:13
Alignment explanation
Indices: 30089328--30089358 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
30089318 AAACAATTTC
30089328 ATAATAATCCTAA
1 ATAATAATCCTAA
30089341 ATAATAATCCTAA
1 ATAATAATCCTAA
30089354 A-AATA
1 ATAATA
30089359 GAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAATAATCCTAA
Found at i:30089969 original size:14 final size:14
Alignment explanation
Indices: 30089952--30089981 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30089942 TTGATTTTCT
30089952 TTTTTTTCTTCTTC
1 TTTTTTTCTTCTTC
*
30089966 TTTTTTTCTTTTTC
1 TTTTTTTCTTCTTC
30089980 TT
1 TT
30089982 AGGAATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTCTTCTTC
Found at i:30100428 original size:19 final size:20
Alignment explanation
Indices: 30100404--30100458 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
30100394 TGTTTCATCC
30100404 AACAAAAAAAAAGAAAAAG-
1 AACAAAAAAAAAGAAAAAGT
* *
30100423 AACAAAAGAAAA-AAAGAGT
1 AACAAAAAAAAAGAAAAAGT
*
30100442 AAAAAAAGAAAAAGAAA
1 AACAAAA-AAAAAGAAA
30100459 GAGAGAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 5 0.17
19 17 0.59
20 4 0.14
21 3 0.10
ACGTcount: A:0.82, C:0.04, G:0.13, T:0.02
Consensus pattern (20 bp):
AACAAAAAAAAAGAAAAAGT
Found at i:30101456 original size:50 final size:50
Alignment explanation
Indices: 30101402--30101736 Score: 128
Period size: 50 Copynumber: 6.7 Consensus size: 50
30101392 AAGACGAGAC
* * *
30101402 TACAACACCAAATCTTATACCTTTAAAGTTGCAGTGGATCGAA-TTAAAGT
1 TACAAAACCAAATCTTATACCTTTAAAGTTGCAGTGGAGC-AAGATAAAGT
* * * * *
30101452 TACAAAAGCAAATCTT-TATCTTCCTAAAGTTACAGTGGAGCAAGATGAGGT
1 TACAAAACCAAATCTTATACCTT--TAAAGTTGCAGTGGAGCAAGATAAAGT
* * * * **
30101503 TACAATACCAAATCCTATACCTCTGAAGTTGCAGTGG-GTC-AGATTAAAAC
1 TACAAAACCAAATCTTATACCTTTAAAGTTGCAGTGGAG-CAAGA-TAAAGT
* * * ** * * * * *
30101553 TACAAAAGCAATTTTTAT-CTCCCTAAAGTTACAATGGAACAAGATGAAGC
1 TACAAAACCAAATCTTATAC-CTTTAAAGTTGCAGTGGAGCAAGATAAAGT
* * * * * * * * * *
30101603 TACGACATCAAATCTTATATCC-CTGAAGTTGTAGTGGATC-GGATTGAAGC
1 TACAAAACCAAATCTTATA-CCTTTAAAGTTGCAGTGGAGCAAGA-TAAAGT
* * *** * *
30101653 TACAAAAGCAAATCTT-TATCTCTTTGAAGTTGCAGAAAAGCAAGATGAAGC
1 TACAAAACCAAATCTTATA-C-CTTTAAAGTTGCAGTGGAGCAAGATAAAGT
* * *
30101704 TACAAAACCAAATTTTACACCCTTAAAGTTGCA
1 TACAAAACCAAATCTTATACCTTTAAAGTTGCA
30101737 TTGGGTCGGA
Statistics
Matches: 212, Mismatches: 57, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
49 16 0.08
50 119 0.56
51 69 0.33
52 8 0.04
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (50 bp):
TACAAAACCAAATCTTATACCTTTAAAGTTGCAGTGGAGCAAGATAAAGT
Found at i:30101513 original size:101 final size:101
Alignment explanation
Indices: 30101401--30101842 Score: 403
Period size: 101 Copynumber: 4.4 Consensus size: 101
30101391 TAAGACGAGA
* *
30101401 CTACAACACCAAATCTTATACCTTTAAAGTTGCAGTGGATCGAATTAAAGTTACAAAAGCAAATC
1 CTACAACACCAAATCTTATACCTCTAAAGTTGCAGTGGATCGAATTAAAGCTACAAAAGCAAATC
* *
30101466 TTTATCTTCCTAAAGTTACAGTGGAGCAAGATGAGG
66 TTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * * *
30101502 TTACAATACCAAATCCTATACCTCTGAAGTTGCAGTGGGTC-AGATTAAAACTACAAAAGC-AAT
1 CTACAACACCAAATCTTATACCTCTAAAGTTGCAGTGGATCGA-ATTAAAGCTACAAAAGCAAAT
* * *
30101565 TTTTATCTCCCTAAAGTTACAATGGAACAAGATGAAG
65 CTTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * * *
30101602 CTACGACATCAAATCTTATATCC-CTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAAT
1 CTACAACACCAAATCTTATA-CCTCTAAAGTTGCAGTGGATCGAATTAAAGCTACAAAAGCAAAT
** * * ***
30101666 CTTTATCTCTTTGAAGTTGCAGAAAAGCAAGATGAAG
65 CTTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * * * * * *
30101703 CTACAAAACCAAATTTTACACC-CTTAAAGTTGCATTGGGTCGGATTGAAGTTACAGAAGCAAAT
1 CTACAACACCAAATCTTATACCTC-TAAAGTTGCAGTGGATCGAATTAAAGCTACAAAAGCAAAT
* ** *
30101767 C-TTATCTCCCTAGAGACACATTGGAGCAAGATGAAG
65 CTTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * *
30101803 TTACAACATCAAATCCTCTAT-CC-CTGAAGTTGTAGTGGAT
1 CTACAACACCAAAT-CT-TATACCTCTAAAGTTGCAGTGGAT
30101843 TAGATTGAAA
Statistics
Matches: 270, Mismatches: 64, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
100 132 0.49
101 136 0.50
102 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (101 bp):
CTACAACACCAAATCTTATACCTCTAAAGTTGCAGTGGATCGAATTAAAGCTACAAAAGCAAATC
TTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
Found at i:30101774 original size:201 final size:201
Alignment explanation
Indices: 30101401--30101851 Score: 503
Period size: 201 Copynumber: 2.2 Consensus size: 201
30101391 TAAGACGAGA
* * * * * * *
30101401 CTACAACACCAAATCTTATA-CCTTTAAAGTTGCAGTGGATCGAATTAAAGTTACAAAAGCAAAT
1 CTACAACATCAAATCTTATATCC-CTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAAT
*** * * * * *
30101465 CTTTATCTTCCTAAAGTTACAGTGGAGCAAGATGAGGTTACAATACCAAATCCTATACCTCTGAA
65 CTTTATCTTCCTAAAGTTACAGAAAAGCAAGATGAAGCTACAAAACCAAATCCTACACCTCTAAA
* * **
30101530 GTTGCAGTGGGTCAGATTAAAACTACAAAAGCAATTTTTATCTCCCTAAAGTTACAATGGAACAA
130 GTTGCAGTGGGTCAGATTAAAACTACAAAAGCAAATCTTATCTCCCTAAAGACACAATGGAACAA
30101595 GATGAAG
195 GATGAAG
*
30101602 CTACGACATCAAATCTTATATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAATC
1 CTACAACATCAAATCTTATATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAATC
* * * **
30101667 TTTATC-TCTTTGAAGTTGCAGAAAAGCAAGATGAAGCTACAAAACCAAATTTTACACC-CTTAA
66 TTTATCTTC-CTAAAGTTACAGAAAAGCAAGATGAAGCTACAAAACCAAATCCTACACCTC-TAA
* * * ** * * * *
30101730 AGTTGCATTGGGTCGGATTGAAGTTACAGAAGCAAATCTTATCTCCCTAGAGACACATTGGAGCA
129 AGTTGCAGTGGGTCAGATTAAAACTACAAAAGCAAATCTTATCTCCCTAAAGACACAATGGAACA
30101795 AGATGAAG
194 AGATGAAG
* * * **
30101803 TTACAACATCAAATCCTCTATCCCTGAAGTTGTAGTGGATTAGATTGAA
1 CTACAACATCAAATCTTATATCCCTGAAGTTGTAGTGGATCGGATTGAA
30101852 ACTATATTAG
Statistics
Matches: 207, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
200 3 0.01
201 202 0.98
202 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (201 bp):
CTACAACATCAAATCTTATATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAATC
TTTATCTTCCTAAAGTTACAGAAAAGCAAGATGAAGCTACAAAACCAAATCCTACACCTCTAAAG
TTGCAGTGGGTCAGATTAAAACTACAAAAGCAAATCTTATCTCCCTAAAGACACAATGGAACAAG
ATGAAG
Found at i:30101864 original size:100 final size:100
Alignment explanation
Indices: 30101401--30101877 Score: 397
Period size: 100 Copynumber: 4.8 Consensus size: 100
30101391 TAAGACGAGA
* * * *
30101401 CTACAACACCAAATCTTATA-CCTTTAAAGTTGCAGTGGATC-GAATT-AAAGTTACAAAAGCAA
1 CTACAACACCAAATCCTATATCC-CTGAAGTTGCAGTGGATCAG-ATTGAAA-CTACAAAAGCAA
* *
30101463 ATCTTTATCTTCCTAAAGTTACAGTGGAGCAAGATGAGG
63 ATC-TTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * *
30101502 TTACAATACCAAATCCTATA-CCTCTGAAGTTGCAGTGGGTCAGATTAAAACTACAAAAGCAATT
1 CTACAACACCAAATCCTATATCC-CTGAAGTTGCAGTGGATCAGATTGAAACTACAAAAGCAAAT
* * *
30101566 TTTATCTCCCTAAAGTTACAATGGAACAAGATGAAG
65 CTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * * *
30101602 CTACGACATCAAATCTTATATCCCTGAAGTTGTAGTGGATCGGATTGAAGCTACAAAAGCAAATC
1 CTACAACACCAAATCCTATATCCCTGAAGTTGCAGTGGATCAGATTGAAACTACAAAAGCAAATC
** * * ***
30101667 TTTATCTCTTTGAAGTTGCAGAAAAGCAAGATGAAG
66 -TTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* ** * * * * * ** *
30101703 CTACAAAACCAAATTTTACA-CCCTTAAAGTTGCATTGGGTCGGATTGAAGTTACAGAAGCAAAT
1 CTACAACACCAAATCCTATATCCC-TGAAGTTGCAGTGGATCAGATTGAAACTACAAAAGCAAAT
* ** *
30101767 CTTATCTCCCTAGAGACACATTGGAGCAAGATGAAG
65 CTTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
* * * * * * ** *
30101803 TTACAACATCAAATCCTCTATCCCTGAAGTTGTAGTGGATTAGATTGAAACTATATTAGCAAGTC
1 CTACAACACCAAATCCTATATCCCTGAAGTTGCAGTGGATCAGATTGAAACTACAAAAGCAAATC
30101868 TTATCTCCCT
66 TTATCTCCCT
30101878 GAAGATGCAA
Statistics
Matches: 295, Mismatches: 75, Indels: 13
0.77 0.20 0.03
Matches are distributed among these distances:
100 160 0.54
101 131 0.44
102 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (100 bp):
CTACAACACCAAATCCTATATCCCTGAAGTTGCAGTGGATCAGATTGAAACTACAAAAGCAAATC
TTATCTCCCTAAAGTTACAGTGGAGCAAGATGAAG
Found at i:30103365 original size:4 final size:4
Alignment explanation
Indices: 30103331--30103381 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
30103321 AATTTAGTCC
*
30103331 TTTA TTCA TTT- TTTA -TTA TTT- TTTA -TTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
30103375 TTTA TTT
1 TTTA TTT
30103382 CCAACACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 12 0.29
4 29 0.71
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:30103371 original size:12 final size:11
Alignment explanation
Indices: 30103331--30103381 Score: 61
Period size: 10 Copynumber: 4.6 Consensus size: 11
30103321 AATTTAGTCC
*
30103331 TTTATTCATTT
1 TTTATTTATTT
30103342 TTTA-TTATTT
1 TTTATTTATTT
30103352 TTTA-TTATTT
1 TTTATTTATTT
30103362 ATTTATTTATTT
1 -TTTATTTATTT
30103374 ATTTATTT
1 -TTTATTT
30103382 CCAACACTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
10 15 0.41
11 8 0.22
12 14 0.38
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTATTT
Found at i:30105292 original size:86 final size:85
Alignment explanation
Indices: 30105183--30105345 Score: 254
Period size: 86 Copynumber: 1.9 Consensus size: 85
30105173 AAACGTTGCT
* * * *
30105183 ATAGAACATGATCTTTAGCGGCGCTTTACCCACAAATGCCGCTATAAAACATAGTCTTTAGTGGT
1 ATAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCACTATAAAACAT-GTCTTTAGCGGC
30105248 GTTTTTCCCACAAGCGCCGCA
65 GTTTTTCCCACAAGCGCCGCA
* *
30105269 ATAGAACATGATCTTTAGTGGCGCTTTTCCCACAAACGCCACTATAAAACATGTCTTTAGCGGCG
1 ATAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCACTATAAAACATGTCTTTAGCGGCG
*
30105334 TTTTTCCTACAA
66 TTTTTCCCACAA
30105346 ACTGCACTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 22 0.31
86 48 0.69
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (85 bp):
ATAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCACTATAAAACATGTCTTTAGCGGCG
TTTTTCCCACAAGCGCCGCA
Found at i:30105339 original size:42 final size:43
Alignment explanation
Indices: 30105180--30105347 Score: 196
Period size: 43 Copynumber: 3.9 Consensus size: 43
30105170 CATAAACGTT
* * *
30105180 GCTATAGAACATGATCTTTAGCGGCGCTTTACCCACAAATGCC
1 GCTATAAAACATGATCTTTAGCGGCGCTTTTCCCACAAACGCC
* * * *
30105223 GCTATAAAACAT-AGTCTTTAGTGGTGTTTTTCCCACAAGCGCC
1 GCTATAAAACATGA-TCTTTAGCGGCGCTTTTCCCACAAACGCC
* * *
30105266 GCAATAGAACATGATCTTTAGTGGCGCTTTTCCCACAAACGCC
1 GCTATAAAACATGATCTTTAGCGGCGCTTTTCCCACAAACGCC
* * *
30105309 ACTATAAAACATG-TCTTTAGCGGCGTTTTTCCTACAAAC
1 GCTATAAAACATGATCTTTAGCGGCGCTTTTCCCACAAAC
30105348 TGCACTAACA
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 24 0.23
43 80 0.76
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
GCTATAAAACATGATCTTTAGCGGCGCTTTTCCCACAAACGCC
Found at i:30105739 original size:66 final size:66
Alignment explanation
Indices: 30105618--30105742 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 66
30105608 TCATATTTTG
* * * *
30105618 AAGTTGTAGTTGCAGTTCGTCATACTTTCTTTGAGACTCTACTTCCCTCACTGCTGCCTTGGCTT
1 AAGTTGTAGCTGAAGTTCATCATACTTTCTTTGAGACTCTACTTCCCTCAATGCTGCCTTGGCTT
30105683 C
66 C
* * * *
30105684 AAGTTGTAGCTGAAGTTCATCATATTTTCTTTGAGCCTCTGCTTCTCTCAATGCTGCCT
1 AAGTTGTAGCTGAAGTTCATCATACTTTCTTTGAGACTCTACTTCCCTCAATGCTGCCT
30105743 CCACTTTAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (66 bp):
AAGTTGTAGCTGAAGTTCATCATACTTTCTTTGAGACTCTACTTCCCTCAATGCTGCCTTGGCTT
C
Found at i:30111273 original size:6 final size:6
Alignment explanation
Indices: 30111262--30111288 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
30111252 TGGTTATATG
30111262 TTTAGA TTTAGA TTTAGA TTTAGA TTT
1 TTTAGA TTTAGA TTTAGA TTTAGA TTT
30111289 TATCATCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTAGA
Found at i:30111513 original size:34 final size:34
Alignment explanation
Indices: 30111457--30111530 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
30111447 ATTCATTTTG
*
30111457 AATTAAATATTTAGGTTATTTTTAATAATTAAAT
1 AATTAAATAATTAGGTTATTTTTAATAATTAAAT
* *
30111491 AATTAAATAATTGGGTTGTTTTTAATAATTAAAT
1 AATTAAATAATTAGGTTATTTTTAATAATTAAAT
*
30111525 ATTTAA
1 AATTAA
30111531 TTAAATATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (34 bp):
AATTAAATAATTAGGTTATTTTTAATAATTAAAT
Found at i:30111565 original size:13 final size:13
Alignment explanation
Indices: 30111547--30111573 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30111537 ATAATTAAAT
30111547 AATTAAATATTTG
1 AATTAAATATTTG
30111560 AATTAAATATTTG
1 AATTAAATATTTG
30111573 A
1 A
30111574 GTTTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AATTAAATATTTG
Found at i:30113657 original size:42 final size:41
Alignment explanation
Indices: 30113593--30113751 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 41
30113583 CTATTTTTCA
* *
30113593 ACCTTTAGCGGCGTTTTTCCATAAACGCCGCTAATGATCTTT
1 ACCTTTAGCGACGTTTTCCCATAAACGCCGCTAATG-TCTTT
* * *
30113635 AGCTTTTGCGACGTTTTCCCATAAACGCCGCTATTGCTCTTT
1 ACCTTTAGCGACGTTTTCCCATAAACGCCGCTAATG-TCTTT
* ** * * *
30113677 ACCTTTTGCGGTGTTTTCCCATAAATGCCTCTATTG-C-TT
1 ACCTTTAGCGACGTTTTCCCATAAACGCCGCTAATGTCTTT
*
30113716 ATCCTTTAGCAACGTTTTTCCCATAAACGCCGCTAA
1 A-CCTTTAGCGACG-TTTTCCCATAAACGCCGCTAA
30113752 AGGTAAAGAA
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 9 0.09
41 18 0.19
42 67 0.69
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (41 bp):
ACCTTTAGCGACGTTTTCCCATAAACGCCGCTAATGTCTTT
Found at i:30113906 original size:17 final size:19
Alignment explanation
Indices: 30113886--30113926 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
30113876 GATATAATCC
30113886 TTTTAT-AT-ATATTTGAA
1 TTTTATAATAATATTTGAA
*
30113903 TTTT-TAATAATGTTTGAA
1 TTTTATAATAATATTTGAA
30113921 TTTTAT
1 TTTTAT
30113927 TTTTCTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.05
17 6 0.30
18 12 0.60
19 1 0.05
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTTTATAATAATATTTGAA
Found at i:30115552 original size:42 final size:40
Alignment explanation
Indices: 30115495--30115654 Score: 133
Period size: 40 Copynumber: 4.0 Consensus size: 40
30115485 TTGTCTTGTT
* *
30115495 TCCATAAACGTCGCTATAGCTCTTTACCTTTTGCGGTGTTTC
1 TCCAAAAACGCCGCTATAG--CTTTACCTTTTGCGGTGTTTC
*
30115537 TCCAAAAACGCCGCTATTGCTTTACCTTTTGCGGTGTTT-
1 TCCAAAAACGCCGCTATAGCTTTACCTTTTGCGGTGTTTC
**** * * * * *
30115576 AGGGAAAACGCCACTATTGCTTTACCTTTTGCAGCGTTTA
1 TCCAAAAACGCCGCTATAGCTTTACCTTTTGCGGTGTTTC
*** * * *
30115616 TGGGAAAACGCCACTATTGCTTCACCTTTTGCGGTGTTT
1 TCCAAAAACGCCGCTATAGCTTTACCTTTTGCGGTGTTT
30115655 TCGGTCCAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 32 0.31
40 55 0.53
42 16 0.16
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (40 bp):
TCCAAAAACGCCGCTATAGCTTTACCTTTTGCGGTGTTTC
Found at i:30115560 original size:40 final size:39
Alignment explanation
Indices: 30115516--30115655 Score: 190
Period size: 40 Copynumber: 3.5 Consensus size: 39
30115506 CGCTATAGCT
*** *
30115516 CTTTACCTTTTGCGGTGTTTCTCCAAAAACGCCGCTATTG
1 CTTTACCTTTTGCGGTGTTT-TGGGAAAACGCCACTATTG
*
30115556 CTTTACCTTTTGCGGTGTTTAGGGAAAACGCCACTATTG
1 CTTTACCTTTTGCGGTGTTTTGGGAAAACGCCACTATTG
* *
30115595 CTTTACCTTTTGCAGCGTTTATGGGAAAACGCCACTATTG
1 CTTTACCTTTTGCGGTGTTT-TGGGAAAACGCCACTATTG
*
30115635 CTTCACCTTTTGCGGTGTTTT
1 CTTTACCTTTTGCGGTGTTTT
30115656 CGGTCCAAAT
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 33 0.38
40 55 0.62
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.39
Consensus pattern (39 bp):
CTTTACCTTTTGCGGTGTTTTGGGAAAACGCCACTATTG
Found at i:30117429 original size:52 final size:52
Alignment explanation
Indices: 30117344--30117524 Score: 222
Period size: 52 Copynumber: 3.5 Consensus size: 52
30117334 AAAAGGGTTT
* * *
30117344 GATGACTAAGTGTCATCGTGAGTAAATAAATCCTTTACGGATTATGAGGTCC
1 GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCC
*
30117396 GATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTA-ACAGGTCC
1 GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTATA-AGGTCC
** * * * ***
30117448 GATGACTCTGTGTCATCATGAGTATACGAATCCCTCGTGGATTATAAGGTCC
1 GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCC
30117500 GATGACTATA-TGTCATCGTGAGTAT
1 GATGACTA-AGTGTCATCGTGAGTAT
30117525 TAAATGAAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
52 109 0.99
53 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (52 bp):
GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTCC
Found at i:30119464 original size:5 final size:5
Alignment explanation
Indices: 30119439--30119481 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
30119429 TTAATAATCC
* *
30119439 AAAAT CAAAAT AATA- AAAAT AAAAT AAAAT AAAAT AATAT AAA
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
30119482 TTTGTAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:30120543 original size:13 final size:13
Alignment explanation
Indices: 30120525--30120565 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
30120515 GTTTTTGAAA
*
30120525 AAAGTCAACGATT
1 AAAGTCAACGATC
* *
30120538 AAAGTCAATGGTC
1 AAAGTCAACGATC
30120551 AAAGTCAACGATC
1 AAAGTCAACGATC
30120564 AA
1 AA
30120566 CTGTTAATGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (13 bp):
AAAGTCAACGATC
Found at i:30127519 original size:7 final size:7
Alignment explanation
Indices: 30127497--30127538 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
30127487 AAAGGTCAAA
30127497 GTCAACG
1 GTCAACG
30127504 GTCAACG
1 GTCAACG
*
30127511 GTCAGCG
1 GTCAACG
*
30127518 GTCAACT
1 GTCAACG
*
30127525 GTCAACT
1 GTCAACG
30127532 GTCAACG
1 GTCAACG
30127539 ATCGGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (7 bp):
GTCAACG
Found at i:30128176 original size:21 final size:20
Alignment explanation
Indices: 30128146--30128185 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
30128136 GATTGCTCTT
30128146 GAAAATAAAGA-AAGAAGAAA
1 GAAAATAAAGAGAA-AAGAAA
30128166 GAAAACTAAAGAGAAAAGAA
1 GAAAA-TAAAGAGAAAAGAA
30128186 GGTGAGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 11 0.61
22 2 0.11
ACGTcount: A:0.72, C:0.03, G:0.20, T:0.05
Consensus pattern (20 bp):
GAAAATAAAGAGAAAAGAAA
Found at i:30132842 original size:10 final size:10
Alignment explanation
Indices: 30132827--30132853 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
30132817 TTTGGTGGTG
30132827 TAATTAAGTT
1 TAATTAAGTT
30132837 TAATTAAGTT
1 TAATTAAGTT
30132847 TAATTAA
1 TAATTAA
30132854 AAAGGACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (10 bp):
TAATTAAGTT
Found at i:30133866 original size:52 final size:51
Alignment explanation
Indices: 30133697--30133935 Score: 245
Period size: 52 Copynumber: 4.6 Consensus size: 51
30133687 CATAAATGAA
* * *
30133697 AAAGGGTCTGATGAGTAAGTGTCAT-GTGAGTACATGAATCCTTTACGGATT
1 AAAGGTTC-GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATT
* * *
30133748 ATAAGGTCCGATAACTAAGTGTCATCGTGAGTATATGAAATCCTTTATGGATTT
1 A-AAGGTTCGATGACTAAGTGTCATCGTGAGTATATG-AATCCTTTACGGA-TT
*
30133802 AAAGG-TCTGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATT
1 AAAGGTTC-GATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATT
** * *
30133853 AACAGGTTCGATGACTCTGTGTCATCGTGAGTATACGAAT-CTCT-CGTGGATT
1 AA-AGGTTCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAC--GGATT
*
30133905 ATAAGGTCCGATGACTATA-TGTCATCGTGAG
1 A-AAGGTTCGATGACTA-AGTGTCATCGTGAG
30133936 CATTAAATGA
Statistics
Matches: 159, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
50 1 0.01
51 22 0.14
52 87 0.55
53 46 0.29
54 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (51 bp):
AAAGGTTCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATT
Found at i:30133879 original size:105 final size:104
Alignment explanation
Indices: 30133701--30133935 Score: 291
Period size: 104 Copynumber: 2.3 Consensus size: 104
30133691 AATGAAAAAG
*
30133701 GGTCTGATGAGTAAGTGTCAT-GTGAGTACATGAATCCTTTACGGATTATAAGGTCCGATAACTA
1 GGTCTGATGACTAAGTGTCATCGTGAGTACATGAATCCTTTACGGATTATAAGGTCCGATAACTA
* *
30133765 AGTGTCATCGTGAGTATATGAAATC-CTTTATGGATT-TAAA
66 AGTGTCATCGTGAGTATACG-AATCTC-TCATGGATTAT-AA
* * * *
30133805 GGTCTGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTA-ACAGGTTCGATGACT
1 GGTCTGATGACTAAGTGTCATCGTGAGTACATGAATCCTTTACGGATTATA-AGGTCCGATAACT
** *
30133869 CTGTGTCATCGTGAGTATACGAATCTCTCGTGGATTATAA
65 AAGTGTCATCGTGAGTATACGAATCTCTCATGGATTATAA
*
30133909 GGTCCGATGACTATA-TGTCATCGTGAG
1 GGTCTGATGACTA-AGTGTCATCGTGAG
30133936 CATTAAATGA
Statistics
Matches: 115, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
104 58 0.50
105 57 0.50
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (104 bp):
GGTCTGATGACTAAGTGTCATCGTGAGTACATGAATCCTTTACGGATTATAAGGTCCGATAACTA
AGTGTCATCGTGAGTATACGAATCTCTCATGGATTATAA
Found at i:30137861 original size:11 final size:11
Alignment explanation
Indices: 30137847--30137874 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
30137837 AACCAAATCC
30137847 AAAACAATAAT
1 AAAACAATAAT
30137858 AAAACAATAAT
1 AAAACAATAAT
30137869 AAAACA
1 AAAACA
30137875 TTTTAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAACAATAAT
Found at i:30138502 original size:15 final size:16
Alignment explanation
Indices: 30138482--30138515 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
30138472 ATATATAATA
30138482 TTATTTCATT-TTATT
1 TTATTTCATTCTTATT
*
30138497 TTATTTCTTTCTTATT
1 TTATTTCATTCTTATT
30138513 TTA
1 TTA
30138516 AAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTCATTCTTATT
Found at i:30138533 original size:2 final size:2
Alignment explanation
Indices: 30138528--30138570 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
30138518 AAAATCAATC
30138528 TA TA TA TA TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30138568 TA T
1 TA T
30138571 TCGCCTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:30143788 original size:24 final size:22
Alignment explanation
Indices: 30143744--30143790 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
30143734 ACAATTCATA
30143744 TCACTTCAATTCAATTCCAATT
1 TCACTTCAATTCAATTCCAATT
* *
30143766 TCACTTTCACATTCACTTTCAATT
1 TCAC-TTCA-ATTCAATTCCAATT
30143790 T
1 T
30143791 TGATCACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 4 0.19
24 13 0.62
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (22 bp):
TCACTTCAATTCAATTCCAATT
Found at i:30146798 original size:15 final size:15
Alignment explanation
Indices: 30146778--30146839 Score: 72
Period size: 15 Copynumber: 3.9 Consensus size: 15
30146768 AATTTCACCC
30146778 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
30146793 AAAAAAAAAGAGAAAG
1 AAAAAAAAAGA-AAAG
*
30146809 AAAAGAAGAAG-AAAG
1 AAAA-AAAAAGAAAAG
30146824 AAGAAAAAAAAGAAAA
1 -A-AAAAAAAAGAAAA
30146840 AGGAAAGAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
15 15 0.38
16 14 0.35
17 11 0.28
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:30146808 original size:21 final size:22
Alignment explanation
Indices: 30146784--30146857 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 22
30146774 ACCCAAAAAA
30146784 AAAGAAAAGAAAAAAAAAG-AG
1 AAAGAAAAGAAAAAAAAAGAAG
* *
30146805 AAAGAAAAGAAGAAGAAAGAAG
1 AAAGAAAAGAAAAAAAAAGAAG
* *
30146827 AAAAAAAAGAAAAAGGAAAGAA-
1 AAAGAAAAGAAAAA-AAAAGAAG
30146849 AAAGGAAAA
1 AAA-GAAAA
30146858 AAGAGAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
21 17 0.38
22 17 0.38
23 11 0.24
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (22 bp):
AAAGAAAAGAAAAAAAAAGAAG
Found at i:30146812 original size:11 final size:10
Alignment explanation
Indices: 30146778--30146850 Score: 67
Period size: 10 Copynumber: 6.9 Consensus size: 10
30146768 AATTTCACCC
*
30146778 AAAAAAAAAG
1 AAAAGAAAAG
*
30146788 AAAAGAAAAA
1 AAAAGAAAAG
30146798 AAAAGAGAAAG
1 AAAAGA-AAAG
30146809 AAAAGAAGAAG
1 AAAAGAA-AAG
30146820 AAAGAAGAAAA-
1 -AA-AAGAAAAG
30146831 AAAAGAAAAAG
1 AAAAG-AAAAG
*
30146842 GAAAGAAAA
1 AAAAGAAAA
30146851 AGGAAAAAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
9 3 0.06
10 25 0.47
11 16 0.30
12 4 0.08
13 5 0.09
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:30146820 original size:27 final size:29
Alignment explanation
Indices: 30146782--30146865 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
30146772 TCACCCAAAA
30146782 AAAAAGAA-AAGAAA-AAAAAAGAGAAAG
1 AAAAAGAAGAAGAAAGAAAAAAGAGAAAG
30146809 -AAAAGAAGAAGAAAGAAGAAAA-A-AAAG
1 AAAAAGAAGAAGAAAGAA-AAAAGAGAAAG
30146836 AAAAAGGAAAGAA-AAAGGAAAAAAGAGAAA
1 AAAAA-G-AAGAAGAAA-GAAAAAAGAGAAA
30146866 AATGTGAGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
26 7 0.15
27 10 0.21
28 7 0.15
29 12 0.25
30 9 0.19
31 3 0.06
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (29 bp):
AAAAAGAAGAAGAAAGAAAAAAGAGAAAG
Found at i:30146833 original size:34 final size:35
Alignment explanation
Indices: 30146788--30146867 Score: 101
Period size: 33 Copynumber: 2.3 Consensus size: 35
30146778 AAAAAAAAAG
* *
30146788 AAAAGAAAAAAAAAGAGAAAGAAAAGAAGAA-GAA
1 AAAAGAAAAAAAAAGAAAAAGAAAAGAAAAAGGAA
* *
30146822 AGAAG-AAAAAAAAGAAAAAGGAAAGAAAAAGGAA
1 AAAAGAAAAAAAAAGAAAAAGAAAAGAAAAAGGAA
*
30146856 AAAAGAGAAAAA
1 AAAAGAAAAAAA
30146868 TGTGAGGTCG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 22 0.58
34 11 0.29
35 5 0.13
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (35 bp):
AAAAGAAAAAAAAAGAAAAAGAAAAGAAAAAGGAA
Found at i:30146851 original size:11 final size:11
Alignment explanation
Indices: 30146778--30146866 Score: 87
Period size: 11 Copynumber: 8.4 Consensus size: 11
30146768 AATTTCACCC
30146778 AAAA-AAAAAG
1 AAAAGAAAAAG
30146788 AAAAGAAAAA-
1 AAAAGAAAAAG
*
30146798 AAAAGAGAAAG
1 AAAAGAAAAAG
*
30146809 AAAAGAAGAAG
1 AAAAGAAAAAG
*
30146820 -AAAGAAGAAAA
1 AAAAGAA-AAAG
30146831 AAAAGAAAAAG
1 AAAAGAAAAAG
*
30146842 GAAAGAAAAAG
1 AAAAGAAAAAG
* *
30146853 GAAA-AAAGAG
1 AAAAGAAAAAG
30146863 AAAA
1 AAAA
30146867 ATGTGAGGTC
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
10 27 0.41
11 33 0.50
12 6 0.09
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:30146866 original size:27 final size:26
Alignment explanation
Indices: 30146782--30146867 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
30146772 TCACCCAAAA
* *
30146782 AAAAAGAAAAGAAAAA-AAAAGAGAA
1 AAAAAGAAAAGAAAAAGAAAAAAGAG
*
30146807 AGAAAAGAAGAAGAAAGAAGAAAAAAAAG
1 A-AAAAGAA-AAGAAA-AAGAAAAAAGAG
*
30146836 AAAAAGGAAAGAAAAAGGAAAAAAGAG
1 AAAAAGAAAAGAAAAA-GAAAAAAGAG
30146863 AAAAA
1 AAAAA
30146868 TGTGAGGTCG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 9 0.18
27 26 0.51
28 8 0.16
29 7 0.14
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (26 bp):
AAAAAGAAAAGAAAAAGAAAAAAGAG
Found at i:30148016 original size:49 final size:49
Alignment explanation
Indices: 30147835--30148224 Score: 199
Period size: 50 Copynumber: 7.9 Consensus size: 49
30147825 AAGGCCGCAC
* * * * * * **
30147835 GGTGAACCTAGTACCTTAGAAGACATGATGGGAAAGATCGAGGCCGTAAT
1 GGTGAATCTGGTACCAT-GAAGACGTGAAGGGAAAGATTGAGGCCACAAT
* ** * * * *
30147885 GGCGAATCTGGTACCATG-AGATATGGAGAGAAAGGTTGAGGCCACAAC
1 GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGATTGAGGCCACAAT
*** * * * * * * *
30147933 GACAAACCCGATA-CATTAGAAGACATGATGGGAAAGATCGAGGCCGCAAT
1 GGTGAATCTGGTACCA-T-GAAGACGTGAAGGGAAAGATTGAGGCCACAAT
* * * ** *
30147983 GGTGGATTTGGTACCATGAAGATGTGAAGGGAAAGGGTGAGGCCACAAC
1 GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGATTGAGGCCACAAT
* * * * * *
30148032 GGTGAACCCGGTACCTTAGAAGACATGATGGGAAGGATTGAGGCCACAAT
1 GGTGAATCTGGTACCAT-GAAGACGTGAAGGGAAAGATTGAGGCCACAAT
* * *
30148082 GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGGTTGAGGCCGCAAC
1 GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGATTGAGGCCACAAT
* * ** * * * * * ** *
30148131 AGTGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATTGAAGCCGGAAC
1 GGTGAATCTGGTACCAT-GAAGACGTGAAGGGAAAGATTGAGGCCACAAT
** * * * *
30148181 GACGAATCTAGTACCATGAAGATGTAAAGGGAAAGGTTGAGGCC
1 GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGATTGAGGCC
30148225 GCAGCAGCGA
Statistics
Matches: 249, Mismatches: 85, Indels: 13
0.72 0.24 0.04
Matches are distributed among these distances:
47 2 0.01
48 30 0.12
49 98 0.39
50 117 0.47
51 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.33, T:0.17
Consensus pattern (49 bp):
GGTGAATCTGGTACCATGAAGACGTGAAGGGAAAGATTGAGGCCACAAT
Found at i:30148075 original size:99 final size:99
Alignment explanation
Indices: 30147819--30148267 Score: 510
Period size: 99 Copynumber: 4.6 Consensus size: 99
30147809 ATACGAAAGG
* * * * *
30147819 AAGGTTAAGGCCGC-ACGGTGAACCTAGTACCTTAGAAGACATGATGGGAAAGATCGAGGCCGTA
1 AAGGTTGAGGCCACAACGGTGAACCCAGTACCTTAGAAGACATGATGGGAAAGATTGAGGCCGCA
* * *
30147883 ATGGCGAATCTGGTACCATG-AGATATGGAGAGA
66 ATGGCGAATCTGGTACCATGAAGATGTGAAGGGA
*** * *
30147916 AAGGTTGAGGCCACAACGACAAACCC-GATACATTAGAAGACATGATGGGAAAGATCGAGGCCGC
1 AAGGTTGAGGCCACAACGGTGAACCCAG-TACCTTAGAAGACATGATGGGAAAGATTGAGGCCGC
* * *
30147980 AATGGTGGATTTGGTACCATGAAGATGTGAAGGGA
65 AATGGCGAATCTGGTACCATGAAGATGTGAAGGGA
* * * *
30148015 AAGGGTGAGGCCACAACGGTGAACCCGGTACCTTAGAAGACATGATGGGAAGGATTGAGGCCACA
1 AAGGTTGAGGCCACAACGGTGAACCCAGTACCTTAGAAGACATGATGGGAAAGATTGAGGCCGCA
* *
30148080 ATGGTGAATCTGGTACCATGAAGACGTGAAGGGA
66 ATGGCGAATCTGGTACCATGAAGATGTGAAGGGA
* * ** * * *
30148114 AAGGTTGAGGCCGCAACAGTGAACCCAGTACCTTAGAAGATGTGATGGGAAGGATTGAAGCCGGA
1 AAGGTTGAGGCCACAACGGTGAACCCAGTACCTTAGAAGACATGATGGGAAAGATTGAGGCCGCA
* * * *
30148179 ACGACGAATCTAGTACCATGAAGATGTAAAGGGA
66 ATGGCGAATCTGGTACCATGAAGATGTGAAGGGA
* * * * * *
30148213 AAGGTTGAGGCCGCAGCAGCGAACCTAATACCTTAGAA-ACATGATGGGAAAGATT
1 AAGGTTGAGGCCACAACGGTGAACCCAGTACCTTAGAAGACATGATGGGAAAGATT
30148268 TAAGCTGCAA
Statistics
Matches: 301, Mismatches: 47, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
97 13 0.04
98 73 0.24
99 214 0.71
100 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.32, T:0.17
Consensus pattern (99 bp):
AAGGTTGAGGCCACAACGGTGAACCCAGTACCTTAGAAGACATGATGGGAAAGATTGAGGCCGCA
ATGGCGAATCTGGTACCATGAAGATGTGAAGGGA
Found at i:30148194 original size:50 final size:49
Alignment explanation
Indices: 30147951--30148227 Score: 175
Period size: 49 Copynumber: 5.6 Consensus size: 49
30147941 CGATACATTA
* * * * * * * *
30147951 GAAGACATGATGGGAAAGATCGAGGCCGCAATGGTGGATTTGGTACCAT
1 GAAGACGTGATGGGAAGGATTGAGGCCGCAACGATGAATCTAGTACCAT
* * * * * * ** *
30148000 GAAGATGTGAAGGGAAAGG-GTGAGGCCACAACGGTGAACCCGGTACCTT
1 GAAGACGTGATGGG-AAGGATTGAGGCCGCAACGATGAATCTAGTACCAT
* * * * *
30148049 AGAAGACATGATGGGAAGGATTGAGGCCACAATGGTGAATCTGGTACCAT
1 -GAAGACGTGATGGGAAGGATTGAGGCCGCAACGATGAATCTAGTACCAT
* * * *
30148099 GAAGACGTGAAGGGAAAGG-TTGAGGCCGCAAC-AGTGAACCCAGTACCTT
1 GAAGACGTGATGGG-AAGGATTGAGGCCGCAACGA-TGAATCTAGTACCAT
* * * *
30148148 AGAAGATGTGATGGGAAGGATTGAAGCCGGAACGACGAATCTAGTACCAT
1 -GAAGACGTGATGGGAAGGATTGAGGCCGCAACGATGAATCTAGTACCAT
* * *
30148198 GAAGATGTAAAGGGAAAGG-TTGAGGCCGCA
1 GAAGACGTGATGGG-AAGGATTGAGGCCGCA
30148228 GCAGCGAACC
Statistics
Matches: 177, Mismatches: 42, Indels: 18
0.75 0.18 0.08
Matches are distributed among these distances:
49 95 0.54
50 81 0.46
51 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.34, T:0.17
Consensus pattern (49 bp):
GAAGACGTGATGGGAAGGATTGAGGCCGCAACGATGAATCTAGTACCAT
Found at i:30148837 original size:122 final size:122
Alignment explanation
Indices: 30148617--30149098 Score: 644
Period size: 122 Copynumber: 4.0 Consensus size: 122
30148607 AACGAAGCTA
* * *
30148617 AGCTCAATATGAGTGAAACTTCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCAGACA
1 AGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGAGTCAGACA
* * * * * *
30148682 ATAAAGTGGTCATCTTCCTGGTAAGATATAGAGAAGTAGACCAAATCAATGAAGTAG
66 ATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATGAAGCAG
* * * * * *
30148739 AGCTCAATGTGAGCGAAACTTCGAGCCCTATCTTCCTGATGAGACACAGAGAAGTGAGTCAGATA
1 AGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGAGTCAGACA
* *
30148804 ATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATTAAGCAA
66 ATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATGAAGCAG
* * *
30148861 AGCTCAATGTAAGTGAAACTTCAAACCCCATCTTCCTAATGAGATACAAAGAAGT-AGGTCAGAC
1 AGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGA-GTCAGAC
* ** * * *
30148925 AATGAAGTGGTCATCTTCCTAATGAGATATAGAGAAGTGGACCAAATAAATGAAGCGG
65 AATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATGAAGCAG
* *
30148983 AGCTCAATGTGAGTGAAACTTCGAACCCCATCTTCCTGATGAGATATAGAGAAGTG-GCTCAGAC
1 AGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGAG-TCAGAC
** * *
30149047 AATGAAGCAATCATCTTCCTGGTGAGGTACAGAGAAGTAGACCAAATCAATG
65 AATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATG
30149099 TGAGTAAAAC
Statistics
Matches: 309, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
121 2 0.01
122 307 0.99
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (122 bp):
AGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGAGTCAGACA
ATGAAGTGATCATCTTCCTGGTGAGATACAGAGAAGTAGACCAAATAAATGAAGCAG
Done.