Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 100 of 120
Found at i:28727067 original size:23 final size:23
Alignment explanation
Indices: 28727016--28727074 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
28727006 TGGATTTTTT
* * *
28727016 AATTAATTTTAAATTTAAATTCA
1 AATTAAATTTAAACTTAAATTAA
28727039 AATTAAATTTAAACTT-AATTAA
1 AATTAAATTTAAACTTAAATTAA
*
28727061 AATTTAAACTTAAA
1 AA-TTAAATTTAAA
28727075 AGAAAAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 7 0.23
23 24 0.77
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (23 bp):
AATTAAATTTAAACTTAAATTAA
Found at i:28727087 original size:19 final size:18
Alignment explanation
Indices: 28727043--28727093 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
28727033 AATTCAAATT
**
28727043 AAATTTAAACTT-AATTA
1 AAATTTAAACTTAAAAGA
28727060 AAATTTAAACTTAAAAGA
1 AAATTTAAACTTAAAAGA
28727078 AAAGTTTAAACTTAAA
1 AAA-TTTAAACTTAAA
28727094 CTAAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.40
18 6 0.20
19 12 0.40
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (18 bp):
AAATTTAAACTTAAAAGA
Found at i:28728069 original size:17 final size:17
Alignment explanation
Indices: 28728047--28728096 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
28728037 AAATCATTCC
*
28728047 AAATTTATACTAAATAT
1 AAATTTATAATAAATAT
* *
28728064 AAATTTAAAATAAATTT
1 AAATTTATAATAAATAT
28728081 AAATTTATGAATAAAT
1 AAATTTAT-AATAAAT
28728097 TCAAAGCCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 21 0.75
18 7 0.25
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATTTATAATAAATAT
Found at i:28744856 original size:200 final size:194
Alignment explanation
Indices: 28744512--28744877 Score: 570
Period size: 200 Copynumber: 1.9 Consensus size: 194
28744502 TCTACTCAGA
* * * * *
28744512 AAACCAGATGAAGTATGTTAGTATCATATACACCCAGAAACAAGGAAATTTGCCCTTTGGCCTCT
1 AAACCAAATGAAGTATGTTAGAATCATATACACCCAGAAACAAGGAAACTTGCCCTATGACCTCT
* *
28744577 GAAGTCTAGGACACAAGATCAATTACAAAATGAGTGTGTAAAAGGTCCTACAAAGGTCAGCCAAC
66 GAAGTCTAGGACACAAAATCAATTACAAAATGAGTGTGTAAAAGGTCCTACAAAGGCCAGCCAAC
28744642 CAACCAAAATGTCTAAATTTGCAGAGTCAAGACCTGCAACATCACTCTACTCAGAAAAATACTT
131 CAACCAAAATGTCTAAATTTGCAGAGTCAAGACCTGCAACATCACTCTACTCAGAAAAATACTT
* * *
28744706 AAACCAAATGAAGTATGTTAGAATCGTATACACCCAGAAATAAGGAGACTTGCCCTATGACCTCT
1 AAACCAAATGAAGTATGTTAGAATCATATACACCCAGAAACAAGGAAACTTGCCCTATGACCTCT
*
28744771 GAAGTCTAGGACTAGGACACAAAATCAATTACAAAATGAGTGTGTAAAAGGTCCTACATAGGCCA
66 GAAG--T----CTAGGACACAAAATCAATTACAAAATGAGTGTGTAAAAGGTCCTACAAAGGCCA
*
28744836 GCCAACCAACCAAAATGTCTAAATTTGCAGTGTCAAGACCTG
125 GCCAACCAACCAAAATGTCTAAATTTGCAGAGTCAAGACCTG
28744878 GTCCAGTGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
194 61 0.40
196 1 0.01
200 92 0.60
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (194 bp):
AAACCAAATGAAGTATGTTAGAATCATATACACCCAGAAACAAGGAAACTTGCCCTATGACCTCT
GAAGTCTAGGACACAAAATCAATTACAAAATGAGTGTGTAAAAGGTCCTACAAAGGCCAGCCAAC
CAACCAAAATGTCTAAATTTGCAGAGTCAAGACCTGCAACATCACTCTACTCAGAAAAATACTT
Found at i:28748771 original size:22 final size:22
Alignment explanation
Indices: 28748733--28748777 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
28748723 TTAAATTGTA
28748733 ACAAGTACAATACATTATAAAT
1 ACAAGTACAATACATTATAAAT
*
28748755 ACAAGTCCAAATA-ATTATAAAT
1 ACAAGTAC-AATACATTATAAAT
28748777 A
1 A
28748778 TCAAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.27
Consensus pattern (22 bp):
ACAAGTACAATACATTATAAAT
Found at i:28750272 original size:17 final size:16
Alignment explanation
Indices: 28750225--28750278 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
28750215 TAAACCTATT
*
28750225 AAATATAATTATTAAATA
1 AAATATTATT-TT-AATA
*
28750243 AAA-ATTATCTTAATTA
1 AAATATTATTTTAA-TA
28750259 AAATATTATTTTAATA
1 AAATATTATTTTAATA
28750275 AAAT
1 AAAT
28750279 GTTTGAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.06
16 13 0.42
17 13 0.42
18 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATATTATTTTAATA
Found at i:28750479 original size:32 final size:32
Alignment explanation
Indices: 28750427--28750489 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
28750417 TTATAATCTT
* *
28750427 ATAAATTTATTACTTGAATTTAATAACTCATG
1 ATAAATTAATTAATTGAATTTAATAACTCATG
* *
28750459 ATAAATTAATTAATTTAATTTGATAACTCAT
1 ATAAATTAATTAATTGAATTTAATAACTCAT
28750490 ACCGATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (32 bp):
ATAAATTAATTAATTGAATTTAATAACTCATG
Found at i:28752759 original size:143 final size:143
Alignment explanation
Indices: 28752501--28752787 Score: 574
Period size: 143 Copynumber: 2.0 Consensus size: 143
28752491 TTAAAATAGT
28752501 TTGTTTGCAAGCAATTTGCACTCTAATTAGTTATACTGTGAATAAGGAAACAATACAAATTACAA
1 TTGTTTGCAAGCAATTTGCACTCTAATTAGTTATACTGTGAATAAGGAAACAATACAAATTACAA
28752566 AAAATATTGTATTTCATGAAAAAACAAAATACCTAGAGGCAGAGTGCCATTTCATCAGGCAAAAG
66 AAAATATTGTATTTCATGAAAAAACAAAATACCTAGAGGCAGAGTGCCATTTCATCAGGCAAAAG
28752631 GCTCAATAAGGGC
131 GCTCAATAAGGGC
28752644 TTGTTTGCAAGCAATTTGCACTCTAATTAGTTATACTGTGAATAAGGAAACAATACAAATTACAA
1 TTGTTTGCAAGCAATTTGCACTCTAATTAGTTATACTGTGAATAAGGAAACAATACAAATTACAA
28752709 AAAATATTGTATTTCATGAAAAAACAAAATACCTAGAGGCAGAGTGCCATTTCATCAGGCAAAAG
66 AAAATATTGTATTTCATGAAAAAACAAAATACCTAGAGGCAGAGTGCCATTTCATCAGGCAAAAG
28752774 GCTCAATAAGGGC
131 GCTCAATAAGGGC
28752787 T
1 T
28752788 CATTCAAACA
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
143 144 1.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (143 bp):
TTGTTTGCAAGCAATTTGCACTCTAATTAGTTATACTGTGAATAAGGAAACAATACAAATTACAA
AAAATATTGTATTTCATGAAAAAACAAAATACCTAGAGGCAGAGTGCCATTTCATCAGGCAAAAG
GCTCAATAAGGGC
Found at i:28753492 original size:16 final size:16
Alignment explanation
Indices: 28753451--28753495 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
28753441 AAACAAACTA
28753451 TACATTGAGAAC-AAT
1 TACATTGAGAACAAAT
**
28753466 TATGTTGAGAACAAAT
1 TACATTGAGAACAAAT
*
28753482 TACATTTAGAACAA
1 TACATTGAGAACAA
28753496 GTCAAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (16 bp):
TACATTGAGAACAAAT
Found at i:28765659 original size:22 final size:22
Alignment explanation
Indices: 28765634--28765675 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
28765624 ACTATACATT
28765634 TTAATAAAAACAATAAAATAGC
1 TTAATAAAAACAATAAAATAGC
* * *
28765656 TTAATTAAAATATTAAAATA
1 TTAATAAAAACAATAAAATA
28765676 TATAAATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (22 bp):
TTAATAAAAACAATAAAATAGC
Found at i:28777445 original size:14 final size:15
Alignment explanation
Indices: 28777426--28777455 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
28777416 CCTTCCACTG
28777426 TTTCCTTT-TTTTTT
1 TTTCCTTTCTTTTTT
28777440 TTTCCTTTCTTTTTT
1 TTTCCTTTCTTTTTT
28777455 T
1 T
28777456 CCCCTCTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCCTTTCTTTTTT
Found at i:28777953 original size:21 final size:21
Alignment explanation
Indices: 28777921--28777963 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
28777911 AGAAAGAGAA
28777921 GAGTGATTTGGAGCAATCTGT
1 GAGTGATTTGGAGCAATCTGT
*
28777942 GAGTG-TTGTGGAGGAATCTGT
1 GAGTGATT-TGGAGCAATCTGT
28777963 G
1 G
28777964 GATTTGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.21, C:0.07, G:0.40, T:0.33
Consensus pattern (21 bp):
GAGTGATTTGGAGCAATCTGT
Found at i:28784136 original size:14 final size:16
Alignment explanation
Indices: 28784105--28784139 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
28784095 AAATGCTTCT
28784105 TTTTTTTTCTTCTCTG
1 TTTTTTTTCTTCTCTG
28784121 TTTTTTTTCTT-T-TG
1 TTTTTTTTCTTCTCTG
28784135 TTTTT
1 TTTTT
28784140 CTGGGTGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 1 0.05
16 11 0.58
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (16 bp):
TTTTTTTTCTTCTCTG
Found at i:28785176 original size:41 final size:41
Alignment explanation
Indices: 28785131--28785217 Score: 174
Period size: 41 Copynumber: 2.1 Consensus size: 41
28785121 TTAGGGGCAG
28785131 AAGTTACTTGTGTATCTTATACATTACACATTGCAGCATTA
1 AAGTTACTTGTGTATCTTATACATTACACATTGCAGCATTA
28785172 AAGTTACTTGTGTATCTTATACATTACACATTGCAGCATTA
1 AAGTTACTTGTGTATCTTATACATTACACATTGCAGCATTA
28785213 AAGTT
1 AAGTT
28785218 TTCTTTACTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (41 bp):
AAGTTACTTGTGTATCTTATACATTACACATTGCAGCATTA
Found at i:28799163 original size:18 final size:19
Alignment explanation
Indices: 28799104--28799164 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
28799094 ATTACAAAAG
28799104 AAAATT-AAAATAA-TATT
1 AAAATTCAAAATAATTATT
*
28799121 AAAATTTGAAAATAATTATT
1 AAAA-TTCAAAATAATTATT
*
28799141 AAAATTCAAAATATTTA-T
1 AAAATTCAAAATAATTATT
28799159 AAAATT
1 AAAATT
28799165 TTCAAGAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.10
18 9 0.23
19 18 0.46
20 8 0.21
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATAATTATT
Found at i:28799245 original size:17 final size:17
Alignment explanation
Indices: 28799222--28799274 Score: 90
Period size: 18 Copynumber: 3.1 Consensus size: 17
28799212 AAAATTTTAA
28799222 ATTTTTTT-AAAATAAT
1 ATTTTTTTAAAAATAAT
28799238 ATTTTTTTAAATAATAAT
1 ATTTTTTTAAA-AATAAT
28799256 ATTTTTTTAAAAATAAT
1 ATTTTTTTAAAAATAAT
28799273 AT
1 AT
28799275 GATTCAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.23
17 10 0.29
18 17 0.49
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTTTTAAAAATAAT
Found at i:28799430 original size:21 final size:20
Alignment explanation
Indices: 28799406--28799447 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
28799396 ATTTAACTTG
28799406 ATTTTACTTGACTTAAATTTT
1 ATTTTACTTGAC-TAAATTTT
* *
28799427 ATTTTATTTGACTATATTTT
1 ATTTTACTTGACTAAATTTT
28799447 A
1 A
28799448 AAAAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.60
Consensus pattern (20 bp):
ATTTTACTTGACTAAATTTT
Found at i:28807395 original size:60 final size:59
Alignment explanation
Indices: 28807303--28807459 Score: 176
Period size: 60 Copynumber: 2.6 Consensus size: 59
28807293 GAACTTAACA
* *
28807303 ACCTAAACTTTTTTTTATCCAATTCGATACCTGAACTTGACACTTTTTT-CTAATTTGAT
1 ACCTAAACTTTTTTTGATCCAATTTGATACCTGAACTTGACA-TTTTTTCCTAATTTGAT
* * * *
28807362 ACCTAAACTTTTTTTGGATCCAATTTGGTACCTGAAATTGGCATTTTTTCCTAATTTGGT
1 ACCTAAACTTTTTTT-GATCCAATTTGATACCTGAACTTGACATTTTTTCCTAATTTGAT
* * *
28807422 GCACT-AGCTTTTTTTAGATTCAATTTGATACCT-AACTT
1 AC-CTAAACTTTTTTT-GATCCAATTTGATACCTGAACTT
28807460 TATTAAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
59 25 0.30
60 56 0.67
61 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.45
Consensus pattern (59 bp):
ACCTAAACTTTTTTTGATCCAATTTGATACCTGAACTTGACATTTTTTCCTAATTTGAT
Found at i:28807634 original size:25 final size:23
Alignment explanation
Indices: 28807606--28807655 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
28807596 AAAAAATTAG
28807606 GTACTAAATTACGAAAAAGAGTCAA
1 GTACTAAATTA--AAAAAGAGTCAA
* *
28807631 GTACTAACTTAAAAAAGTGTCAA
1 GTACTAAATTAAAAAAGAGTCAA
28807654 GT
1 GT
28807656 TATTAAAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 13 0.57
25 10 0.43
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (23 bp):
GTACTAAATTAAAAAAGAGTCAA
Found at i:28808686 original size:24 final size:24
Alignment explanation
Indices: 28808661--28808719 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
28808651 GAAATTTTTA
*
28808661 AAATTTTA-ACTTTTTTTATATAT
1 AAATTTTAGAATTTTTTTATATAT
28808684 AAATTTTAGAATTTTTTTATA-A-
1 AAATTTTAGAATTTTTTTATATAT
*
28808706 ATATTTT-GAATTTT
1 AAATTTTAGAATTTT
28808720 AATAATTACC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 7 0.21
22 6 0.18
23 9 0.27
24 11 0.33
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (24 bp):
AAATTTTAGAATTTTTTTATATAT
Found at i:28808704 original size:22 final size:22
Alignment explanation
Indices: 28808672--28808719 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
28808662 AATTTTAACT
28808672 TTTTTTATATATAA-ATTTTAGAA
1 TTTTTTATATA-AATATTTT-GAA
28808695 TTTTTT-TATAAATATTTTGAA
1 TTTTTTATATAAATATTTTGAA
28808716 TTTT
1 TTTT
28808720 AATAATTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.38
22 9 0.38
23 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTTTTATATAAATATTTTGAA
Found at i:28810489 original size:2 final size:2
Alignment explanation
Indices: 28810482--28810522 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
28810472 AGAATTGTTA
28810482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
28810523 AGAGAAGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28840794 original size:25 final size:25
Alignment explanation
Indices: 28840748--28840805 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
28840738 AAATTTTTTA
28840748 AAAACTTTGTAAAAAATAAAAATAAAT
1 AAAA-TTTGTAAAAAATAAAAA-AAAT
* *
28840775 AAAATTT-TAAAAAATTAAAAAATT
1 AAAATTTGTAAAAAATAAAAAAAAT
28840799 AAAATTT
1 AAAATTT
28840806 AATTAATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.34
25 12 0.41
26 3 0.10
27 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAATTTGTAAAAAATAAAAAAAAT
Found at i:28846553 original size:29 final size:28
Alignment explanation
Indices: 28846499--28846554 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
28846489 CACTTTAACC
*
28846499 TCTTTAAAAATAATAAAAATTTAATTAA
1 TCTTTAAAAATAATAAAAATTAAATTAA
* *
28846527 TCTTTTAAAATTATAAAAATATAAATTA
1 TCTTTAAAAATAATAAAAAT-TAAATTA
28846555 TTAAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (28 bp):
TCTTTAAAAATAATAAAAATTAAATTAA
Found at i:28847483 original size:20 final size:20
Alignment explanation
Indices: 28847460--28847519 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 20
28847450 CATTTTTGGA
28847460 ATTTTTAATGTATTTTATAT
1 ATTTTTAATGTATTTTATAT
* ** ** *
28847480 ATTTTAAATAAATTCGATGT
1 ATTTTTAATGTATTTTATAT
28847500 A-TTTTAATGT-TTTTATAT
1 ATTTTTAATGTATTTTATAT
28847518 AT
1 AT
28847520 AATAAATATT
Statistics
Matches: 27, Mismatches: 12, Indels: 3
0.64 0.29 0.07
Matches are distributed among these distances:
18 6 0.22
19 6 0.22
20 15 0.56
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (20 bp):
ATTTTTAATGTATTTTATAT
Found at i:28850476 original size:73 final size:73
Alignment explanation
Indices: 28850351--28850496 Score: 202
Period size: 73 Copynumber: 2.0 Consensus size: 73
28850341 AAGTCATTTG
** * * ** *
28850351 CTTATAGTAAACACACGAAATTTGAATAAATCATCACTAATGATCAGTTCAATGTCCAATAAATA
1 CTTATAGTAAACACAAAAAATTTGAATAAATCATCACTAATAACCACCTCAATGCCCAATAAATA
28850416 CTGAAGTT
66 CTGAAGTT
* *
28850424 CTTATAGTAAACACAAAAAATTTGAATAAATCATCACTAATAACCACCTCAATGCCCAGTAGATA
1 CTTATAGTAAACACAAAAAATTTGAATAAATCATCACTAATAACCACCTCAATGCCCAATAAATA
*
28850489 TTGAAGTT
66 CTGAAGTT
28850497 ATCAAGATGG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (73 bp):
CTTATAGTAAACACAAAAAATTTGAATAAATCATCACTAATAACCACCTCAATGCCCAATAAATA
CTGAAGTT
Found at i:28852638 original size:45 final size:45
Alignment explanation
Indices: 28852540--28852631 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
28852530 GTGCAGAACA
*
28852540 AAGCTTCTCACTTGCTAGCTGACTGTAAACCTCCTCATTGACATT
1 AAGCTTCTCACTTGCTAGCTGACTATAAACCTCCTCATTGACATT
* *
28852585 AAGCTTCTCACTTGCTAGCTGGCTATCAACCTCCTCATTGACATT
1 AAGCTTCTCACTTGCTAGCTGACTATAAACCTCCTCATTGACATT
28852630 AA
1 AA
28852632 TTTTCTCTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (45 bp):
AAGCTTCTCACTTGCTAGCTGACTATAAACCTCCTCATTGACATT
Found at i:28857127 original size:24 final size:24
Alignment explanation
Indices: 28857099--28857149 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
28857089 AGAAATAATC
* *
28857099 TTTCAGTTAAATTCTGTTTAATTG
1 TTTCAATTAAACTCTGTTTAATTG
*
28857123 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTAATTG
28857147 TTT
1 TTT
28857150 GAGTCAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.57
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTAATTG
Found at i:28857158 original size:24 final size:24
Alignment explanation
Indices: 28857111--28857161 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
28857101 TCAGTTAAAT
*
28857111 TCTGTTTAATTGTTTCAATTAAAC
1 TCTGTTTAATTGTTTCAATCAAAC
* * *
28857135 TCTGTTTATTTGTTTGAGTCAAAC
1 TCTGTTTAATTGTTTCAATCAAAC
28857159 TCT
1 TCT
28857162 TATTAGTCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.51
Consensus pattern (24 bp):
TCTGTTTAATTGTTTCAATCAAAC
Found at i:28859097 original size:24 final size:24
Alignment explanation
Indices: 28859064--28859114 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
28859054 AGAAATAATC
* *
28859064 TTTCAGTTAAAATTTGTTTAATTG
1 TTTCAATTAAAATCTGTTTAATTG
* *
28859088 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAAATCTGTTTAATTG
28859112 TTT
1 TTT
28859115 AAGTCAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.08, G:0.10, T:0.57
Consensus pattern (24 bp):
TTTCAATTAAAATCTGTTTAATTG
Found at i:28859123 original size:24 final size:24
Alignment explanation
Indices: 28859078--28859126 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
28859068 AGTTAAAATT
*
28859078 TGTTTAATTGTTTCAATTAAACTC
1 TGTTTAATTGTTTCAATCAAACTC
*
28859102 TGTTTATTTGTTT-AAGTCAAACTC
1 TGTTTAATTGTTTCAA-TCAAACTC
28859126 T
1 T
28859127 TATTAGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (24 bp):
TGTTTAATTGTTTCAATCAAACTC
Found at i:28872184 original size:14 final size:14
Alignment explanation
Indices: 28872165--28872191 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
28872155 ATGAATTTTG
28872165 ATTTTATACAATTA
1 ATTTTATACAATTA
28872179 ATTTTATACAATT
1 ATTTTATACAATT
28872192 GCAATAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTATACAATTA
Found at i:28874646 original size:2 final size:2
Alignment explanation
Indices: 28874622--28874664 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
28874612 CTGAAAATCT
* * *
28874622 TA TA CA TA TA CA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28874664 T
1 T
28874665 TAAATAATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:28878892 original size:19 final size:19
Alignment explanation
Indices: 28878868--28878905 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
28878858 AACTCAATTT
28878868 CATTTATTTATTATTTTTA
1 CATTTATTTATTATTTTTA
28878887 CATTTATTTATTATTTTTA
1 CATTTATTTATTATTTTTA
28878906 TGAATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
CATTTATTTATTATTTTTA
Found at i:28878986 original size:66 final size:69
Alignment explanation
Indices: 28878889--28879032 Score: 222
Period size: 70 Copynumber: 2.1 Consensus size: 69
28878879 TATTTTTACA
*
28878889 TTTATTTATTATTTTTATGAATATAAATAAAT-A-TAAAATAATATTAATTTTGTTTTATTATTT
1 TTTATTTATTATTTGTATGAATATAAATAAATAATTAAAATAATATTAATTTTGTTTTATTATTT
*
28878952 GTTT
66 ATTT
28878956 TTTATTTATTA-TTGTATGAATATAAATAAATAAATTTAAAATAATATTAATTTTGTTTTATTAT
1 TTTATTTATTATTTGTATGAATATAAATAAAT-AA-TTAAAATAATATTAATTTTGTTTTATTAT
28879020 TTATTT
64 TTATTT
*
28879026 ATTATTT
1 TTTATTT
28879033 TATGAATATA
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
66 19 0.27
67 11 0.16
68 1 0.01
70 39 0.56
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (69 bp):
TTTATTTATTATTTGTATGAATATAAATAAATAATTAAAATAATATTAATTTTGTTTTATTATTT
ATTT
Found at i:28879042 original size:63 final size:62
Alignment explanation
Indices: 28878888--28879053 Score: 212
Period size: 63 Copynumber: 2.6 Consensus size: 62
28878878 TTATTTTTAC
28878888 ATTTATTTATTATTTTTATGAATATAAATAAAT--A-TAAAATAATATTAATTTTGTTTTATT
1 ATTTATTTATTA-TTTTATGAATATAAATAAATAAATTAAAATAATATTAATTTTGTTTTATT
*
28878948 ATTTGTTTTTTATTTATTATTGTATGAATATAAATAAATAAATTTAAAATAATATTAATTTTGTT
1 A-------TTTATTTATTATTTTATGAATATAAATAAATAAA-TTAAAATAATATTAATTTTGTT
28879013 TTATT
58 TTATT
*
28879018 ATTTATTTATTATTTTATGAATATAGATAAATAAAT
1 ATTTATTTATTATTTTATGAATATAAATAAATAAAT
28879054 AAATAAATAA
Statistics
Matches: 92, Mismatches: 3, Indels: 20
0.80 0.03 0.17
Matches are distributed among these distances:
60 1 0.01
62 1 0.01
63 32 0.35
66 19 0.21
67 11 0.12
68 1 0.01
70 27 0.29
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (62 bp):
ATTTATTTATTATTTTATGAATATAAATAAATAAATTAAAATAATATTAATTTTGTTTTATT
Found at i:28880696 original size:18 final size:17
Alignment explanation
Indices: 28880653--28880703 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 17
28880643 AAAAATATGA
28880653 AAAAAATATA-AAAATT
1 AAAAAATATAGAAAATT
* * *
28880669 AGACATTATAGAAAATT
1 AAAAAATATAGAAAATT
28880686 ATAAAAATATAGAAAATT
1 A-AAAAATATAGAAAATT
28880704 TTATTGAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
16 7 0.26
17 7 0.26
18 13 0.48
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (17 bp):
AAAAAATATAGAAAATT
Found at i:28883857 original size:27 final size:25
Alignment explanation
Indices: 28883814--28883881 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
28883804 CACCCATTAA
*
28883814 AATA-TAATTAAAAATAATTTTATATC
1 AATATTAAATAAAAATAA--TTATATC
*
28883840 AATATTAAATAAAAATAATTATATT
1 AATATTAAATAAAAATAATTATATC
*
28883865 AATATTTAA-AAAAATAA
1 AATATTAAATAAAAATAA
28883882 AAAATAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 8 0.21
25 14 0.37
26 4 0.11
27 12 0.32
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (25 bp):
AATATTAAATAAAAATAATTATATC
Found at i:28888352 original size:16 final size:16
Alignment explanation
Indices: 28888331--28888362 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
28888321 TAAACCAGCT
28888331 TAAACTTCTCTATCAA
1 TAAACTTCTCTATCAA
28888347 TAAACTTCTCTATCAA
1 TAAACTTCTCTATCAA
28888363 CAATTAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAACTTCTCTATCAA
Found at i:28889112 original size:2 final size:2
Alignment explanation
Indices: 28889105--28889135 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
28889095 TCAAAGGTTG
28889105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
28889136 CCACAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:28910822 original size:2 final size:2
Alignment explanation
Indices: 28910817--28910841 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
28910807 TATGTGTGTG
28910817 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
28910842 TTCTTTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:28914140 original size:18 final size:18
Alignment explanation
Indices: 28914085--28914157 Score: 62
Period size: 18 Copynumber: 4.0 Consensus size: 18
28914075 AAGTCGTAAG
*
28914085 AAAATATATAAAAATGTA
1 AAAATATATAAAAATATA
*
28914103 AAGAA-ATATAAAATTCATA
1 AA-AATATATAAAAAT-ATA
28914122 ATAAAT-TATAAAAATATA
1 A-AAATATATAAAAATATA
*
28914140 AAAATGTA-AAGAAATATA
1 AAAATATATAA-AAATATA
28914158 TATTAACTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
17 6 0.13
18 24 0.52
19 15 0.33
20 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATATATAAAAATATA
Found at i:28918447 original size:86 final size:86
Alignment explanation
Indices: 28918302--28918472 Score: 333
Period size: 86 Copynumber: 2.0 Consensus size: 86
28918292 CAATCGTTGG
*
28918302 GTCAAAATATCAAAATGCTACATCTGTTGTTGAAGCAACGACAATTAATTTTAGTCCATTTTATC
1 GTCAAAATATCAAAATGCTACATCTGTTGTTGAAGCAAAGACAATTAATTTTAGTCCATTTTATC
28918367 ACTTCATTCAAGTTATTAGGT
66 ACTTCATTCAAGTTATTAGGT
28918388 GTCAAAATATCAAAATGCTACATCTGTTGTTGAAGCAAAGACAATTAATTTTAGTCCATTTTATC
1 GTCAAAATATCAAAATGCTACATCTGTTGTTGAAGCAAAGACAATTAATTTTAGTCCATTTTATC
28918453 ACTTCATTCAAGTTATTAGG
66 ACTTCATTCAAGTTATTAGG
28918473 ATCATTATAT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (86 bp):
GTCAAAATATCAAAATGCTACATCTGTTGTTGAAGCAAAGACAATTAATTTTAGTCCATTTTATC
ACTTCATTCAAGTTATTAGGT
Found at i:28919049 original size:27 final size:27
Alignment explanation
Indices: 28918978--28919059 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
28918968 GGTTTGTTAG
* *
28918978 TGTTTAGACGAACCAAGGATTCGCCAA
1 TGTTTCGACGAACCAGGGATTCGCCAA
28919005 TGTTTCGACGAACCAGGGATTCGCCAA
1 TGTTTCGACGAACCAGGGATTCGCCAA
* *
28919032 TGTTTCGACGAACTAGGGGGTTCGCCAA
1 TGTTTCGACGAACCA-GGGATTCGCCAA
28919060 AAGAATATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 39 0.78
28 11 0.22
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (27 bp):
TGTTTCGACGAACCAGGGATTCGCCAA
Found at i:28919528 original size:19 final size:19
Alignment explanation
Indices: 28919479--28919529 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
28919469 TGTTGCATTC
*
28919479 TATGTATGTTTTGTCTGTT
1 TATGTATGTTGTGTCTGTT
* *
28919498 TAAGTAAT-TTGTGTGTGTT
1 TATGT-ATGTTGTGTCTGTT
28919517 TATGTATGTTGTG
1 TATGTATGTTGTG
28919530 AACCAGCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.08
19 22 0.85
20 2 0.08
ACGTcount: A:0.16, C:0.02, G:0.25, T:0.57
Consensus pattern (19 bp):
TATGTATGTTGTGTCTGTT
Found at i:28936987 original size:22 final size:22
Alignment explanation
Indices: 28936962--28937003 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
28936952 GCTTGTACGG
28936962 GTTTAGCACCTCGGTGCCCTTT
1 GTTTAGCACCTCGGTGCCCTTT
*
28936984 GTTTAGCACTTCGGTGCCCT
1 GTTTAGCACCTCGGTGCCCT
28937004 CTTTTCAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.31, G:0.24, T:0.36
Consensus pattern (22 bp):
GTTTAGCACCTCGGTGCCCTTT
Found at i:28937013 original size:22 final size:22
Alignment explanation
Indices: 28936966--28937015 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
28936956 GTACGGGTTT
* *
28936966 AGCACCTCGGTGCCCTTTGTTT
1 AGCACTTCGGTGCCCTTTGTTC
28936988 AGCACTTCGGTGCCCTCTT-TTC
1 AGCACTTCGGTGCCCT-TTGTTC
28937010 AGCACT
1 AGCACT
28937016 ACAGTGCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.12, C:0.34, G:0.20, T:0.34
Consensus pattern (22 bp):
AGCACTTCGGTGCCCTTTGTTC
Found at i:28937022 original size:22 final size:22
Alignment explanation
Indices: 28936975--28937028 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
28936965 TAGCACCTCG
* * *
28936975 GTGCCCTTTGTTTAGCACTTCG
1 GTGCCCTTTGTTCAGCACTACA
28936997 GTGCCCTCTT-TTCAGCACTACA
1 GTGCCCT-TTGTTCAGCACTACA
*
28937019 GTGCTCTTTG
1 GTGCCCTTTG
28937029 GTGCAGCGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (22 bp):
GTGCCCTTTGTTCAGCACTACA
Found at i:28942542 original size:18 final size:18
Alignment explanation
Indices: 28942515--28942549 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
28942505 TCAATTCTTA
28942515 TTTTCCTTTATATTTTAG
1 TTTTCCTTTATATTTTAG
* *
28942533 TTTTCTTTTATTTTTTA
1 TTTTCCTTTATATTTTA
28942550 TCTACCTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTCCTTTATATTTTAG
Found at i:28942583 original size:23 final size:24
Alignment explanation
Indices: 28942543--28942588 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
28942533 TTTTCTTTTA
*
28942543 TTTTTTATCTACCTTTGTGGCACG
1 TTTTTTATCTACCTTTGTAGCACG
* *
28942567 TTTTTTTTCTGCC-TTGTAGCAC
1 TTTTTTATCTACCTTTGTAGCAC
28942589 ACTTTTGCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.11, C:0.22, G:0.15, T:0.52
Consensus pattern (24 bp):
TTTTTTATCTACCTTTGTAGCACG
Found at i:28947237 original size:29 final size:28
Alignment explanation
Indices: 28947148--28947239 Score: 78
Period size: 31 Copynumber: 3.1 Consensus size: 28
28947138 TCTTTAAATG
*
28947148 TATATAATTGATAAAATTAAAGTTT-TA
1 TATATAATTGATCAAATTAAAGTTTATA
* * * *
28947175 TGTATAAATTTGAACCACAATTAAAATTCCATA
1 TATAT-AA-TTG-ATCA-AATTAAAGTT-TATA
28947208 TATATAATTGTATCAAATTAAAGTTTATA
1 TATATAATTG-ATCAAATTAAAGTTTATA
28947237 TAT
1 TAT
28947240 CAAATTACAT
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
27 4 0.08
28 2 0.04
29 9 0.18
30 11 0.22
31 15 0.31
32 2 0.04
33 6 0.12
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (28 bp):
TATATAATTGATCAAATTAAAGTTTATA
Found at i:28954648 original size:20 final size:20
Alignment explanation
Indices: 28954603--28954650 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
28954593 AAATTGTTGA
*
28954603 ATTTTTAATATGTTTAATAT
1 ATTTTTAATATATTTAATAT
* *
28954623 AATTTTAATA-ATTTATTATT
1 ATTTTTAATATATTTAATA-T
28954643 ATTTTTAA
1 ATTTTTAA
28954651 GATTTTTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTAATATATTTAATAT
Found at i:28955206 original size:19 final size:21
Alignment explanation
Indices: 28955182--28955226 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
28955172 TAATTCTAAA
*
28955182 TAAAATTTAAA-AAAATAT-T
1 TAAAATATAAATAAAATATAT
*
28955201 TAAAATATAAATAAATTATAT
1 TAAAATATAAATAAAATATAT
28955222 TAAAA
1 TAAAA
28955227 ATTCAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 10 0.45
20 6 0.27
21 6 0.27
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAATATAAATAAAATATAT
Found at i:28956294 original size:14 final size:14
Alignment explanation
Indices: 28956275--28956303 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
28956265 AGTGATTTTT
28956275 ACTTAGTTTTTATA
1 ACTTAGTTTTTATA
28956289 ACTTAGTTTTTATA
1 ACTTAGTTTTTATA
28956303 A
1 A
28956304 AATCTGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (14 bp):
ACTTAGTTTTTATA
Found at i:28956691 original size:15 final size:16
Alignment explanation
Indices: 28956671--28956703 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
28956661 ACTATATTAT
28956671 ATTAAAA-AACATAAA
1 ATTAAAATAACATAAA
28956686 ATTAAAATAACATAAA
1 ATTAAAATAACATAAA
28956702 AT
1 AT
28956704 ATTTATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (16 bp):
ATTAAAATAACATAAA
Found at i:28956940 original size:23 final size:23
Alignment explanation
Indices: 28956914--28956962 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
28956904 AACACTTAAA
28956914 TTTTCAATTTATCAATCCACAGT
1 TTTTCAATTTATCAATCCACAGT
28956937 TTTTCAATTTATCAATCCACAGT
1 TTTTCAATTTATCAATCCACAGT
28956960 TTT
1 TTT
28956963 GTGGCTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (23 bp):
TTTTCAATTTATCAATCCACAGT
Found at i:28957516 original size:17 final size:17
Alignment explanation
Indices: 28957494--28957587 Score: 116
Period size: 17 Copynumber: 5.5 Consensus size: 17
28957484 AACTTTTAAT
*
28957494 TTTTAAATTTTAATTTA
1 TTTTAAATTTAAATTTA
*
28957511 TTTTAAATTTTAATTTA
1 TTTTAAATTTAAATTTA
*
28957528 TTTTAAATTTAAATTCA
1 TTTTAAATTTAAATTTA
* * *
28957545 TGTTGAGTTTAAATTTA
1 TTTTAAATTTAAATTTA
*
28957562 TTTTAAATTTGAATTTA
1 TTTTAAATTTAAATTTA
*
28957579 TTTTGAATT
1 TTTTAAATT
28957588 AAAAACTTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 66 1.00
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:28959512 original size:29 final size:29
Alignment explanation
Indices: 28959452--28959734 Score: 132
Period size: 30 Copynumber: 9.6 Consensus size: 29
28959442 AAACTTTTTT
* *
28959452 AAAATTATATTTTTGACCCCAAAACATT-TA
1 AAAATTACATTTTT-ACCCTAAAAC-TTCTA
* **
28959482 AACATTACATTTTTACCCTCGAACTTCTA
1 AAAATTACATTTTTACCCTAAAACTTCTA
* *
28959511 AAAATTCCATTTTTGACCCTAAAACTTCCA
1 AAAATTACATTTTT-ACCCTAAAACTTCTA
** * * *
28959541 AAAATTACCGTTTTACCCTTATACTTCCA
1 AAAATTACATTTTTACCCTAAAACTTCTA
* *
28959570 AAAATTCCATTTTTGACCCCAAAACTT-TCA
1 AAAATTACATTTTT-ACCCTAAAACTTCT-A
* * * *** *
28959600 AAAATTGCCA-TTTTGCCTTCGGA-TGTCAA
1 AAAATT-ACATTTTTACCCTAAAACT-TCTA
* *
28959629 AAAATTCCATTTTTGACCCCAAAACTT-TCA
1 AAAATTACATTTTT-ACCCTAAAACTTCT-A
** * *
28959659 AAAATTACTATTTTT--CCTCGAATTTCCA
1 AAAATTAC-ATTTTTACCCTAAAACTTCTA
* *
28959687 AAAATTCCATTTTTGA-CCTCAAAACTTTTA
1 AAAATTACATTTTT-ACCCT-AAAACTTCTA
*
28959717 AAAATTACACTTTTACCC
1 AAAATTACATTTTTACCC
28959735 AAGATGTCCA
Statistics
Matches: 186, Mismatches: 50, Indels: 34
0.69 0.19 0.13
Matches are distributed among these distances:
27 6 0.03
28 20 0.11
29 64 0.34
30 86 0.46
31 10 0.05
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (29 bp):
AAAATTACATTTTTACCCTAAAACTTCTA
Found at i:28959548 original size:59 final size:59
Alignment explanation
Indices: 28959460--28959760 Score: 321
Period size: 59 Copynumber: 5.1 Consensus size: 59
28959450 TTAAAATTAT
* *
28959460 ATTTTTGACCCCAAAACATTT-AAACATTACATTTTTACCCTCGAACTTCTAAAAATTCC
1 ATTTTTGACCCCAAAAC-TTTCAAAAATTACATTTTTACCCTCGAACTTCCAAAAATTCC
* * ** *
28959519 ATTTTTGACCCTAAAACTTCCAAAAATTACCGTTTTACCCT-TATACTTCCAAAAATTCC
1 ATTTTTGACCCCAAAACTTTCAAAAATTACATTTTTACCCTCGA-ACTTCCAAAAATTCC
* * * * *
28959578 ATTTTTGACCCCAAAACTTTCAAAAATTGCCA-TTTTGCCTTCGGA-TGTCAAAAAATTCC
1 ATTTTTGACCCCAAAACTTTCAAAAATT-ACATTTTTACCCTCGAACT-TCCAAAAATTCC
*
28959637 ATTTTTGACCCCAAAACTTTCAAAAATTACTATTTTT--CCTCGAATTTCCAAAAATTCC
1 ATTTTTGACCCCAAAACTTTCAAAAATTAC-ATTTTTACCCTCGAACTTCCAAAAATTCC
* * * **
28959695 ATTTTTGACCTCAAAACTTTTAAAAATTACACTTTTACCCAAG-A-TGTCCAAAAATTCC
1 ATTTTTGACCCCAAAACTTTCAAAAATTACATTTTTACCCTCGAACT-TCCAAAAATTCC
*
28959753 GTTTTTGA
1 ATTTTTGA
28959761 TCCCGATTAT
Statistics
Matches: 205, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
57 6 0.03
58 69 0.34
59 125 0.61
60 5 0.02
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (59 bp):
ATTTTTGACCCCAAAACTTTCAAAAATTACATTTTTACCCTCGAACTTCCAAAAATTCC
Found at i:28959720 original size:117 final size:118
Alignment explanation
Indices: 28959510--28959722 Score: 322
Period size: 117 Copynumber: 1.8 Consensus size: 118
28959500 TCGAACTTCT
* * *
28959510 AAAAATTCCATTTTTGACCCTAAAACTTCCAAAAATTACCGTTTTACCCTTATACTTCCAAAAAT
1 AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACCATTTTACCCTGATACTTCCAAAAAT
28959575 TCCATTTTTGACCCCAAAACTTTCAAAAATTGCCATTTTGCCTTCGGATGTCA
66 TCCATTTTTGACCCCAAAACTTTCAAAAATTGCCATTTTGCCTTCGGATGTCA
* * * *
28959628 AAAAATTCCATTTTTGACCCCAAAACTTTCAAAAATTACTATTTT-TCCTCGA-ATTTCCAAAAA
1 AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACCATTTTACCCT-GATACTTCCAAAAA
* *
28959691 TTCCATTTTTGACCTCAAAACTTTTAAAAATT
65 TTCCATTTTTGACCCCAAAACTTTCAAAAATT
28959723 ACACTTTTAC
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
117 43 0.51
118 42 0.49
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.36
Consensus pattern (118 bp):
AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACCATTTTACCCTGATACTTCCAAAAAT
TCCATTTTTGACCCCAAAACTTTCAAAAATTGCCATTTTGCCTTCGGATGTCA
Found at i:28964085 original size:49 final size:51
Alignment explanation
Indices: 28964011--28964110 Score: 152
Period size: 49 Copynumber: 2.0 Consensus size: 51
28964001 TCCGTATAAA
*
28964011 ACTACACTTTTTCTATTTGACATTGATTAGAATAA-G-TTTTTTCAACCTT
1 ACTACACTTATTCTATTTGACATTGATTAGAATAAGGTTTTTTTCAACCTT
*
28964060 ACTACACTTCATT-TATTTGATATTGATTAGAATAAGGTTTTTTTCAACCTT
1 ACTACACTT-ATTCTATTTGACATTGATTAGAATAAGGTTTTTTTCAACCTT
28964111 TAAATAGATG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
49 30 0.65
50 3 0.07
51 13 0.28
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (51 bp):
ACTACACTTATTCTATTTGACATTGATTAGAATAAGGTTTTTTTCAACCTT
Found at i:28965387 original size:22 final size:22
Alignment explanation
Indices: 28965362--28965410 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
28965352 TGTTTTCTTC
28965362 TTATTTTGCTACAATTTCATTA
1 TTATTTTGCTACAATTTCATTA
* * * * *
28965384 TTATATTGTTACTATTTTATTG
1 TTATTTTGCTACAATTTCATTA
28965406 TTATT
1 TTATT
28965411 GTTTGAATAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.61
Consensus pattern (22 bp):
TTATTTTGCTACAATTTCATTA
Found at i:28965527 original size:10 final size:10
Alignment explanation
Indices: 28965512--28965554 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
28965502 TTAAGAATAC
28965512 ATATTTTTTA
1 ATATTTTTTA
28965522 ATATTTATTTTA
1 ATA-TT-TTTTA
28965534 ATA-TTTTTA
1 ATATTTTTTA
*
28965543 GTATTTTTTA
1 ATATTTTTTA
28965553 AT
1 AT
28965555 GTATTATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 7 0.25
10 11 0.39
11 2 0.07
12 8 0.29
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
ATATTTTTTA
Found at i:28965855 original size:19 final size:18
Alignment explanation
Indices: 28965831--28965896 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
28965821 AATATTAGAC
28965831 TAAAATTATTAGAAAAATA
1 TAAAATTATTA-AAAAATA
*
28965850 TAAAATAATTAAAAAATCA
1 TAAAATTATTAAAAAAT-A
* * *
28965869 -CAATTTTTTAAAAAATA
1 TAAAATTATTAAAAAATA
28965886 TAAAAATTATT
1 T-AAAATTATT
28965897 TAAATATGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
17 1 0.03
18 18 0.50
19 17 0.47
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAAATTATTAAAAAATA
Found at i:28965866 original size:18 final size:19
Alignment explanation
Indices: 28965831--28965866 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
28965821 AATATTAGAC
*
28965831 TAAAATTATTAGAAAAATA
1 TAAAATAATTAGAAAAATA
28965850 TAAAATAATTA-AAAAAT
1 TAAAATAATTAGAAAAAT
28965867 CACAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAATAATTAGAAAAATA
Found at i:28974792 original size:23 final size:23
Alignment explanation
Indices: 28974762--28974813 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
28974752 ACATTTATTA
28974762 TTCATTGCAGAGAATCTTCAGTG
1 TTCATTGCAGAGAATCTTCAGTG
*
28974785 TTCATTGCAGAGAATCTTCATTG
1 TTCATTGCAGAGAATCTTCAGTG
28974808 TTCATT
1 TTCATT
28974814 TTTGTTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
TTCATTGCAGAGAATCTTCAGTG
Found at i:28977768 original size:31 final size:29
Alignment explanation
Indices: 28977723--28977799 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
28977713 AAATTTTAAA
*
28977723 TTAATAAA-GATAAAATTATATTTTAATCCCT
1 TTAA-AAATGATAAAATT-TAATTTAAT-CCT
*
28977754 TTAAAAATGATAAAAATTTAATTTAATTCT
1 TTAAAAATGAT-AAAATTTAATTTAATCCT
*
28977784 TTAAAAATTATAAAAT
1 TTAAAAATGATAAAAT
28977800 AATAAATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.12
30 15 0.37
31 15 0.37
32 6 0.15
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (29 bp):
TTAAAAATGATAAAATTTAATTTAATCCT
Found at i:28977788 original size:30 final size:32
Alignment explanation
Indices: 28977734--28977798 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
28977724 TAATAAAGAT
*
28977734 AAAATTATATTTTAATCCCTTTAAAAATGATA
1 AAAATTATAATTTAATCCCTTTAAAAATGATA
* *
28977766 AAAATT-TAATTTAAT-TCTTTAAAAATTATA
1 AAAATTATAATTTAATCCCTTTAAAAATGATA
28977796 AAA
1 AAA
28977799 TAATAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 16 0.53
31 8 0.27
32 6 0.20
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (32 bp):
AAAATTATAATTTAATCCCTTTAAAAATGATA
Found at i:28985410 original size:28 final size:30
Alignment explanation
Indices: 28985353--28985413 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
28985343 CTCTTCTTAT
** *
28985353 TTTTATAAAATTTGAAATTTAATTTCTTTA
1 TTTTATAAAATTAAAAATTCAATTTCTTTA
28985383 TTTTA-AAAATTAAAAATTCAATTT-TTTA
1 TTTTATAAAATTAAAAATTCAATTTCTTTA
28985411 TTT
1 TTT
28985414 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.25
29 16 0.57
30 5 0.18
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (30 bp):
TTTTATAAAATTAAAAATTCAATTTCTTTA
Found at i:28986378 original size:15 final size:15
Alignment explanation
Indices: 28986358--28986387 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
28986348 AATGTAAATT
*
28986358 TTAAAAAAAACTAAA
1 TTAAAAAAAAATAAA
28986373 TTAAAAAAAAATAAA
1 TTAAAAAAAAATAAA
28986388 CTTGAGAGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
TTAAAAAAAAATAAA
Found at i:28990461 original size:22 final size:19
Alignment explanation
Indices: 28990436--28990489 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
28990426 TAAAAATATT
28990436 AAAATTAATCTAAACTTATAAA
1 AAAATTAA--TAAA-TTATAAA
*
28990458 AAAATCTAATAAATTATATA
1 AAAAT-TAATAAATTATAAA
*
28990478 AAAATTTATAAA
1 AAAATTAATAAA
28990490 ATTAATATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 6 0.21
20 11 0.38
21 4 0.14
22 5 0.17
23 3 0.10
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTAATAAATTATAAA
Found at i:28990566 original size:9 final size:10
Alignment explanation
Indices: 28990553--28990617 Score: 64
Period size: 10 Copynumber: 6.7 Consensus size: 10
28990543 TTAAAAATAC
28990553 TAAAAAATTA
1 TAAAAAATTA
28990563 -AAAAAATTA
1 TAAAAAATTA
28990572 TAAAAAA-TA
1 TAAAAAATTA
*
28990581 T-TAAAATTGA
1 TAAAAAATT-A
* *
28990591 TATAAACTTA
1 TAAAAAATTA
*
28990601 TAAAAAATCA
1 TAAAAAATTA
28990611 TAAAAAA
1 TAAAAAA
28990618 ATTGTATTGG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
8 4 0.09
9 13 0.28
10 23 0.50
11 6 0.13
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:28991144 original size:19 final size:20
Alignment explanation
Indices: 28991122--28991163 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
28991112 TTATTAGATT
28991122 TTTTTATAAT-ATTTATAAG
1 TTTTTATAATAATTTATAAG
*
28991141 TTTTTATAATAATTTTTAAG
1 TTTTTATAATAATTTATAAG
28991161 TTT
1 TTT
28991164 ATATCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTATAATAATTTATAAG
Found at i:28991144 original size:20 final size:21
Alignment explanation
Indices: 28991121--28991163 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
28991111 TTTATTAGAT
28991121 TTTTTTATAAT-ATTTATAAG
1 TTTTTTATAATAATTTATAAG
*
28991141 -TTTTTATAATAATTTTTAAG
1 TTTTTTATAATAATTTATAAG
28991161 TTT
1 TTT
28991164 ATATCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 10 0.50
20 8 0.40
21 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTTTTATAATAATTTATAAG
Found at i:28991148 original size:10 final size:9
Alignment explanation
Indices: 28991021--28991150 Score: 57
Period size: 9 Copynumber: 13.4 Consensus size: 9
28991011 ATTTTTTATT
28991021 TAATTTTTA
1 TAATTTTTA
28991030 TAATTTTATA
1 TAATTTT-TA
* *
28991040 TCAAATTTGA
1 T-AATTTTTA
28991050 T-ATTTTTAA
1 TAATTTTT-A
*
28991059 TATTTTTTAA
1 TAATTTTT-A
*
28991069 AAATATTTTAAA
1 TAAT-TTTT--A
*
28991081 TAAGTTTTA
1 TAATTTTTA
28991090 TTAA-TTTTA
1 -TAATTTTTA
* *
28991099 TATTTTTTC
1 TAATTTTTA
28991108 TAATTTATTA
1 TAATTT-TTA
* *
28991118 GATTTTTTTA
1 TA-ATTTTTA
*
28991128 TAATATTTA
1 TAATTTTTA
28991137 TAAGTTTTTA
1 TAA-TTTTTA
28991147 TAAT
1 TAAT
28991151 AATTTTTAAG
Statistics
Matches: 91, Mismatches: 19, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
8 6 0.07
9 33 0.36
10 32 0.35
11 16 0.18
12 4 0.04
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (9 bp):
TAATTTTTA
Found at i:28991152 original size:22 final size:21
Alignment explanation
Indices: 28991110--28991163 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
28991100 ATTTTTTCTA
* *
28991110 ATTTATTAGATTTTTTTATAAT
1 ATTTATAAG-TTTTTTAATAAT
28991132 ATTTATAAGTTTTTATAATAAT
1 ATTTATAAGTTTTT-TAATAAT
28991154 -TTT-TAAGTTT
1 ATTTATAAGTTT
28991164 ATATCAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 7 0.24
21 8 0.28
22 14 0.48
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (21 bp):
ATTTATAAGTTTTTTAATAAT
Found at i:28992296 original size:3 final size:3
Alignment explanation
Indices: 28992288--28992329 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
28992278 TTTGTTTGGC
28992288 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
28992330 CTTTGAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:28997620 original size:6 final size:6
Alignment explanation
Indices: 28997609--28997639 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
28997599 AAATTTTGTG
28997609 AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA A
1 AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA A
28997640 AAACTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.16, G:0.16, T:0.00
Consensus pattern (6 bp):
AGCAAA
Found at i:28997880 original size:20 final size:19
Alignment explanation
Indices: 28997826--28997888 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
28997816 ATTCAAAATA
*
28997826 ATAATTTTTTATAAATTTTT
1 ATAATTTTTTAT-AGTTTTT
*
28997846 ATCATTTTTATATAGTTTTCT
1 ATAATTTTT-TATAGTTTT-T
*
28997867 ATAATTTTTTATAGTTATT
1 ATAATTTTTTATAGTTTTT
28997886 ATA
1 ATA
28997889 TTTAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.11
20 21 0.57
21 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
ATAATTTTTTATAGTTTTT
Found at i:28997888 original size:31 final size:31
Alignment explanation
Indices: 28997830--28997889 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
28997820 AAAATAATAA
* *
28997830 TTTTTTATAAATTTTTATCATTTTTATATAG
1 TTTTCTATAAATTTTTATCATTATTATATAG
*
28997861 TTTTCTATAATTTTTTAT-AGTTATTATAT
1 TTTTCTATAAATTTTTATCA-TTATTATAT
28997890 TTAAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTCTATAAATTTTTATCATTATTATATAG
Found at i:28998062 original size:6 final size:6
Alignment explanation
Indices: 28998051--28998084 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
28998041 GGAGAGAATG
28998051 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
28998085 TATTGTGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:28998178 original size:18 final size:20
Alignment explanation
Indices: 28998133--28998179 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
28998123 ATTAATAATT
*
28998133 TATTTTATAATTTTATTACG
1 TATTTTATATTTTTATTACG
*
28998153 -ATTGTATATTTTTA-TA-G
1 TATTTTATATTTTTATTACG
28998170 TATTTTATAT
1 TATTTTATAT
28998180 AATAATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (20 bp):
TATTTTATATTTTTATTACG
Found at i:29004157 original size:2 final size:2
Alignment explanation
Indices: 29004152--29004177 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
29004142 GAGAGAATAC
29004152 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
29004178 TGATAAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29007887 original size:19 final size:20
Alignment explanation
Indices: 29007871--29007909 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
29007861 AATAATTTTC
*
29007871 AAAAATTTTAAATATTTATA
1 AAAAAATTTAAATATTTATA
29007891 AAAAAATTTAAA-ATTTATA
1 AAAAAATTTAAATATTTATA
29007910 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAAATTTAAATATTTATA
Found at i:29007918 original size:16 final size:16
Alignment explanation
Indices: 29007897--29007934 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
29007887 TATAAAAAAA
29007897 TTTAAAATT-TATATTT
1 TTTAAAATTATAT-TTT
29007913 TTT-AAATTATATTTT
1 TTTAAAATTATATTTT
29007928 TTTAAAA
1 TTTAAAA
29007935 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTATATTTT
Found at i:29008038 original size:3 final size:3
Alignment explanation
Indices: 29008032--29008066 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
29008022 ATTGTCTTCT
29008032 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
29008067 TGAAAAAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:29008097 original size:16 final size:16
Alignment explanation
Indices: 29008076--29008106 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29008066 TTGAAAAAGT
29008076 TTTCAAATGTATATGG
1 TTTCAAATGTATATGG
*
29008092 TTTCAAATTTATATG
1 TTTCAAATGTATATG
29008107 CTCTAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (16 bp):
TTTCAAATGTATATGG
Found at i:29011193 original size:22 final size:21
Alignment explanation
Indices: 29011155--29011197 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
29011145 AAAAAATGTA
29011155 TTTAAAAAAATAATAATGTTAG
1 TTTAAAAAAATAATAAT-TTAG
*
29011177 TTTATAAAAAAT-TTAATTTAG
1 TTTA-AAAAAATAATAATTTAG
29011198 CCAAAGCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 7 0.37
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
TTTAAAAAAATAATAATTTAG
Found at i:29012140 original size:61 final size:61
Alignment explanation
Indices: 29012026--29012141 Score: 135
Period size: 61 Copynumber: 1.9 Consensus size: 61
29012016 TAAAAAATTC
* * * * * *
29012026 AATAAATTTAGCCCTCAATGTTTACAAAATTTGTCATTTTAGTTCTAATTCTAAATAAATA
1 AATAAATTTAGCCCTCAATATTTACAAAATCTATCAATTTAATTCTAACTCTAAATAAATA
* **
29012087 AATAAATTTGGCTTTCAATATTTACAAAATCTATCAATTTAA-TCTTAACTCTAAA
1 AATAAATTTAGCCCTCAATATTTACAAAATCTATCAATTTAATTC-TAACTCTAAA
29012142 AATTAAAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
60 2 0.04
61 43 0.96
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (61 bp):
AATAAATTTAGCCCTCAATATTTACAAAATCTATCAATTTAATTCTAACTCTAAATAAATA
Found at i:29013266 original size:61 final size:61
Alignment explanation
Indices: 29013188--29013318 Score: 185
Period size: 61 Copynumber: 2.2 Consensus size: 61
29013178 AAATTTAAAA
* * * **
29013188 TTTTAG-AGTTAGGACTAAATTGACAGATTTTATAAATGTTGAGGGCTAAATTTATTGAATT
1 TTTTAGTA-TTAGAACTAAAATGACAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
*
29013249 TTTTAGTATTAGAACTAAAATGACAAATTTTGTAAACATTGAGGGCTAAATTTATTGAATT
1 TTTTAGTATTAGAACTAAAATGACAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
29013310 TTTTA-TATT
1 TTTTAGTATT
29013319 TAGGATCAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
60 4 0.06
61 58 0.92
62 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (61 bp):
TTTTAGTATTAGAACTAAAATGACAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
Found at i:29020145 original size:28 final size:28
Alignment explanation
Indices: 29020113--29020203 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
29020103 GCCTTATGTC
29020113 CCAAAAAGAAGTTACGCACTTACATTTT
1 CCAAAAAGAAGTTACGCACTTACATTTT
* ** *
29020141 CCAAAAATACA-TT--TTA-TTACCTTATGT
1 CCAAAAAGA-AGTTACGCACTTACATT-T-T
29020168 CCCAAAAAGAAGTTACGCACTTACATTTT
1 -CCAAAAAGAAGTTACGCACTTACATTTT
29020197 CCAAAAA
1 CCAAAAA
29020204 TCCGTTTTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
25 6 0.13
26 2 0.04
27 2 0.04
28 27 0.57
29 2 0.04
30 2 0.04
31 6 0.13
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (28 bp):
CCAAAAAGAAGTTACGCACTTACATTTT
Found at i:29020165 original size:56 final size:56
Alignment explanation
Indices: 29020104--29020215 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
29020094 AGATACTAAG
29020104 CCTTATGTCCCAAAAAGAAGTTACGCACTTACATTTTCCAAAAATACATTTTATTA
1 CCTTATGTCCCAAAAAGAAGTTACGCACTTACATTTTCCAAAAATACATTTTATTA
* *
29020160 CCTTATGTCCCAAAAAGAAGTTACGCACTTACATTTTCCAAAAATCCGTTTTATTA
1 CCTTATGTCCCAAAAAGAAGTTACGCACTTACATTTTCCAAAAATACATTTTATTA
29020216 GTAGCTAGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (56 bp):
CCTTATGTCCCAAAAAGAAGTTACGCACTTACATTTTCCAAAAATACATTTTATTA
Found at i:29020814 original size:24 final size:24
Alignment explanation
Indices: 29020782--29020830 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
29020772 TTATTCAAGT
29020782 ATTGAAATTGAGCTCGAAAATGAA
1 ATTGAAATTGAGCTCGAAAATGAA
29020806 ATTGAAATTGAGCTCGAAAATGAA
1 ATTGAAATTGAGCTCGAAAATGAA
29020830 A
1 A
29020831 GTAATCGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.24
Consensus pattern (24 bp):
ATTGAAATTGAGCTCGAAAATGAA
Found at i:29024192 original size:28 final size:28
Alignment explanation
Indices: 29024161--29024215 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
29024151 GAGCGGAGAA
* * *
29024161 GGCGACGGAGGAAGGAGGAAGCAGCAGT
1 GGCGACAGAGGAAGCAGGAAGAAGCAGT
29024189 GGCGACAGAGGAAGCAGGAAGAAGCAG
1 GGCGACAGAGGAAGCAGGAAGAAGCAG
29024216 GAAGAAGGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.47, T:0.02
Consensus pattern (28 bp):
GGCGACAGAGGAAGCAGGAAGAAGCAGT
Found at i:29030567 original size:2 final size:2
Alignment explanation
Indices: 29030560--29030585 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
29030550 AAAAGAAAAG
29030560 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
29030586 GAAACAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29031504 original size:25 final size:24
Alignment explanation
Indices: 29031457--29031504 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
29031447 TATTTATTTT
* *
29031457 TTTAAGGTTAGGGTTTATAGTTTC
1 TTTAAGATTAGGGTTTAGAGTTTC
*
29031481 TTTAAGATATAGGGTTTAGGGTTT
1 TTTAAGAT-TAGGGTTTAGAGTTT
29031505 TTAACTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (24 bp):
TTTAAGATTAGGGTTTAGAGTTTC
Found at i:29032719 original size:18 final size:19
Alignment explanation
Indices: 29032682--29032721 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
29032672 ATTTAATCCT
29032682 AATTCTAATAAAATTTAAA
1 AATTCTAATAAAATTTAAA
*
29032701 AATTCTCATAAAA-TTAAA
1 AATTCTAATAAAATTTAAA
29032719 AAT
1 AAT
29032722 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AATTCTAATAAAATTTAAA
Found at i:29033771 original size:116 final size:116
Alignment explanation
Indices: 29033567--29033798 Score: 446
Period size: 116 Copynumber: 2.0 Consensus size: 116
29033557 ATCTTTATAA
* *
29033567 GGTCCTCTCTTTCTCAATCTATTTCTCCTCCAAGGGAAAAAAAAGAAAGAAATTTCGGGTTGGGT
1 GGTCCTCTCTTCCTCAATCTATTACTCCTCCAAGGGAAAAAAAAGAAAGAAATTTCGGGTTGGGT
29033632 TTCTGAAAGTGATTCATTTATATCTGAAAAGAATGATTTTTGAACCATTGG
66 TTCTGAAAGTGATTCATTTATATCTGAAAAGAATGATTTTTGAACCATTGG
29033683 GGTCCTCTCTTCCTCAATCTATTACTCCTCCAAGGGAAAAAAAAGAAAGAAATTTCGGGTTGGGT
1 GGTCCTCTCTTCCTCAATCTATTACTCCTCCAAGGGAAAAAAAAGAAAGAAATTTCGGGTTGGGT
29033748 TTCTGAAAGTGATTCATTTATATCTGAAAAGAATGATTTTTGAACCATTGG
66 TTCTGAAAGTGATTCATTTATATCTGAAAAGAATGATTTTTGAACCATTGG
29033799 TGTTTTCTTT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (116 bp):
GGTCCTCTCTTCCTCAATCTATTACTCCTCCAAGGGAAAAAAAAGAAAGAAATTTCGGGTTGGGT
TTCTGAAAGTGATTCATTTATATCTGAAAAGAATGATTTTTGAACCATTGG
Found at i:29042065 original size:76 final size:77
Alignment explanation
Indices: 29041944--29042096 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 77
29041934 TATTCTCTAA
*
29041944 AATTAGGGGTTGTTGATGGAAATTGTAGGGTAGACAAGTAGAGTTAGTG-TTCTTGTAGGGTATT
1 AATTAGGGGTGGTTGATGGAAATTGTAGGGTAGACAAGTAGAGTTAGTGTTTCTTGTAGGGTATT
29042008 TGTGGTTTTCTC
66 TGTGGTTTTCTC
* *
29042020 AATTAGGGGTGGTTGATGGATATTGTAGGGTTGACAAGTAGAGTTAGTGTTTCTTGTAGGGTATT
1 AATTAGGGGTGGTTGATGGAAATTGTAGGGTAGACAAGTAGAGTTAGTGTTTCTTGTAGGGTATT
29042085 TGTGGTTTTCTC
66 TGTGGTTTTCTC
29042097 GGAAGATTAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
76 46 0.63
77 27 0.37
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.41
Consensus pattern (77 bp):
AATTAGGGGTGGTTGATGGAAATTGTAGGGTAGACAAGTAGAGTTAGTGTTTCTTGTAGGGTATT
TGTGGTTTTCTC
Found at i:29045965 original size:59 final size:60
Alignment explanation
Indices: 29045902--29046019 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 60
29045892 TCCTTTACTT
*
29045902 TGAGATTGAGAGTTCTGTGGCTATTGTCAATTGTGTGTGAT-AAAGAAAGCTATGGGTAC
1 TGAGATTGAGAGTTCTGTGGCTATTGTCAATTGTGTGTGATAAAAGAAAGCAATGGGTAC
29045961 TGAGATTGAGAGTTCTGTGGCTATTGTCAATTGTGTGTGATAAAAGAAAGCAATGGGTA
1 TGAGATTGAGAGTTCTGTGGCTATTGTCAATTGTGTGTGATAAAAGAAAGCAATGGGTA
29046020 TTATGACTTG
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 41 0.72
60 16 0.28
ACGTcount: A:0.29, C:0.08, G:0.31, T:0.33
Consensus pattern (60 bp):
TGAGATTGAGAGTTCTGTGGCTATTGTCAATTGTGTGTGATAAAAGAAAGCAATGGGTAC
Found at i:29046514 original size:58 final size:58
Alignment explanation
Indices: 29046429--29046604 Score: 262
Period size: 67 Copynumber: 2.9 Consensus size: 58
29046419 GGTTCCAAAT
*
29046429 CTCTATTTCTACTGTGATTTGTTCCAATACTTCCTTTTTGAGGTGTGCATTCAAATCC
1 CTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGAGGTGTGCATTCAAATCC
29046487 CTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGAGGTTTTTGAGGTGTGCATTCAAAT
1 CTCTATTTCTACTGTGATTTGTGCCAATACTTCC---------TTTTTGAGGTGTGCATTCAAAT
29046552 CC
57 CC
29046554 CTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGAGGTGTGCATT
1 CTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGAGGTGTGCATT
29046605 TTAAAAAATA
Statistics
Matches: 108, Mismatches: 1, Indels: 18
0.85 0.01 0.14
Matches are distributed among these distances:
58 50 0.46
67 58 0.54
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (58 bp):
CTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGAGGTGTGCATTCAAATCC
Found at i:29046571 original size:67 final size:67
Alignment explanation
Indices: 29046463--29046597 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
29046453 CAATACTTCC
29046463 TTTTTGAGGTGTGCATTCAAATCCCTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGA
1 TTTTTGAGGTGTGCATTCAAATCCCTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGA
29046528 GG
66 GG
29046530 TTTTTGAGGTGTGCATTCAAATCCCTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGA
1 TTTTTGAGGTGTGCATTCAAATCCCTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGA
29046595 GG
66 GG
29046597 T
1 T
29046598 GTGCATTTTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (67 bp):
TTTTTGAGGTGTGCATTCAAATCCCTCTATTTCTACTGTGATTTGTGCCAATACTTCCTTTTTGA
GG
Found at i:29047112 original size:28 final size:28
Alignment explanation
Indices: 29047079--29047137 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
29047069 ATCGTCATGT
29047079 TAATTGTTTATGTTGATCGTTAGTCAAC
1 TAATTGTTTATGTTGATCGTTAGTCAAC
29047107 TAATTGTTTATGTTGATCGTTAGTCAAC
1 TAATTGTTTATGTTGATCGTTAGTCAAC
29047135 TAA
1 TAA
29047138 CGGTTATGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (28 bp):
TAATTGTTTATGTTGATCGTTAGTCAAC
Found at i:29061153 original size:15 final size:16
Alignment explanation
Indices: 29061129--29061162 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
29061119 ATATATTACA
29061129 TTTAACTTTTAGTTAT
1 TTTAACTTTTAGTTAT
*
29061145 TTTAA-TTTTATTTAT
1 TTTAACTTTTAGTTAT
29061160 TTT
1 TTT
29061163 CTAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTAACTTTTAGTTAT
Found at i:29073704 original size:2 final size:2
Alignment explanation
Indices: 29073699--29073743 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
29073689 TTTTAAACTT
29073699 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29073741 TA T
1 TA T
29073744 TTAAAGTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29073833 original size:19 final size:19
Alignment explanation
Indices: 29073784--29073834 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
29073774 AAATTTTGGG
29073784 ATTTTTATAAA-TATATTGA
1 ATTTTTA-AAATTATATTGA
*
29073803 ATTTTTAAAATTATTTTGA
1 ATTTTTAAAATTATATTGA
29073822 ATTTTTAAAATTA
1 ATTTTTAAAATTA
29073835 AATTATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 3 0.10
19 27 0.90
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
ATTTTTAAAATTATATTGA
Found at i:29074317 original size:23 final size:23
Alignment explanation
Indices: 29074286--29074329 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
29074276 TGAACAACAT
*
29074286 CCTCTTTTCCACTAGAGTCACAC
1 CCTCATTTCCACTAGAGTCACAC
29074309 CCTCATTTCCACTAGAGTCAC
1 CCTCATTTCCACTAGAGTCAC
29074330 TTGCTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.39, G:0.09, T:0.30
Consensus pattern (23 bp):
CCTCATTTCCACTAGAGTCACAC
Found at i:29080820 original size:31 final size:31
Alignment explanation
Indices: 29080785--29080856 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
29080775 TGCATATTCA
29080785 TTCATGCATTCATAAAATTCCGCATCGCATT
1 TTCATGCATTCATAAAATTCCGCATCGCATT
* **
29080816 TTCATGCATTCATAAAGTTTTGCATCGCATT
1 TTCATGCATTCATAAAATTCCGCATCGCATT
*
29080847 TTCACGCATT
1 TTCATGCATT
29080857 AAAAGTTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (31 bp):
TTCATGCATTCATAAAATTCCGCATCGCATT
Found at i:29087797 original size:50 final size:50
Alignment explanation
Indices: 29087700--29087834 Score: 134
Period size: 50 Copynumber: 2.7 Consensus size: 50
29087690 CTCTAAAGTT
* * ***
29087700 GTAGAGGAACAGATTGAAGCCATGATGGCGAATCTCATATGCCTAAAGCA
1 GTAGAGGGACAGATTAAAGCCGCAATGGCGAATCTCATATGCCTAAAGCA
*
29087750 GTAGAGGGACAGATTAAAGCCGCAATGGCGAATCTCAT-T-CACTTAAAGCT
1 GTAGAGGGACAGATTAAAGCCGCAATGGCGAATCTCATATGC-C-TAAAGCA
* *
29087800 GTAGAGAGG-CAGATTTAAGTCGCAA-GGACGAATCT
1 GTAGAG-GGACAGATTAAAGCCGCAATGG-CGAATCT
29087835 TATACTCCTG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
48 1 0.01
49 4 0.05
50 66 0.90
51 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (50 bp):
GTAGAGGGACAGATTAAAGCCGCAATGGCGAATCTCATATGCCTAAAGCA
Found at i:29087914 original size:40 final size:41
Alignment explanation
Indices: 29087859--29088203 Score: 327
Period size: 40 Copynumber: 8.7 Consensus size: 41
29087849 TGAAATGGGT
*
29087859 AGATTGAAGACCATCCGATCTCTTACCTCAACCA-GAGGGC
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
* *
29087899 AGATTGAAGACCATCCGATCTCTTACCCCGACCATGGGGGC
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
* *
29087940 AGATTGAAGACCATCCAATCTTTTA-CCCAGACCA-GAGGGC
1 AGATTGAAGACCATCCGATCTCTTACCCCA-ACCATGAGGGC
* * *
29087980 AGATTGAAGATCATCTGATCTCTTACCCCAAACATG-GGGC
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
* * * * * *
29088020 AGATTGAAG-CAATCCAATTTTTTACCCTAACCA-GAGAGC
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
* ** * * *
29088059 AGATTAAAGACCATTTGATCCCTTACCCCGACCATG-GGGT
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
** * * *
29088099 AGATTGAAGTA--ATCTAATCTTTTACCCTAACCA-GAGGAC
1 AGATTGAAG-ACCATCCGATCTCTTACCCCAACCATGAGGGC
*
29088138 AGATTGAAGACCATCCGATCTCTTACCCCGACCATG-GGGC
1 AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
* * *
29088178 AGATTGAA-ACGATCCAATCTTTTACC
1 AGATTGAAGACCATCCGATCTCTTACC
29088204 TCTAAAACTA
Statistics
Matches: 242, Mismatches: 51, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
38 3 0.01
39 69 0.29
40 130 0.54
41 40 0.17
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (41 bp):
AGATTGAAGACCATCCGATCTCTTACCCCAACCATGAGGGC
Found at i:29088078 original size:79 final size:79
Alignment explanation
Indices: 29087859--29088208 Score: 452
Period size: 79 Copynumber: 4.4 Consensus size: 79
29087849 TGAAATGGGT
* * *
29087859 AGATTGAAGACCATCCGATCTCTTA-CCTCAACCAGAGGGCAGATTGAAGACCATCCGATCTCTT
1 AGATTGAAG-CAATCCAATCTTTTACCCT-AACCAGAGGGCAGATTGAAGACCATCCGATCTCTT
29087923 ACCCCGACCATGGGGGC
64 ACCCCGACCAT-GGGGC
* * *
29087940 AGATTGAAGACCATCCAATCTTTTACCC-AGACCAGAGGGCAGATTGAAGATCATCTGATCTCTT
1 AGATTGAAG-CAATCCAATCTTTTACCCTA-ACCAGAGGGCAGATTGAAGACCATCCGATCTCTT
* *
29088004 ACCCCAAACATGGGGC
64 ACCCCGACCATGGGGC
* * * ** *
29088020 AGATTGAAGCAATCCAATTTTTTACCCTAACCAGAGAGCAGATTAAAGACCATTTGATCCCTTAC
1 AGATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTCTTAC
*
29088085 CCCGACCATGGGGT
66 CCCGACCATGGGGC
* * *
29088099 AGATTGAAGTAATCTAATCTTTTACCCTAACCAGAGGACAGATTGAAGACCATCCGATCTCTTAC
1 AGATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTCTTAC
29088164 CCCGACCATGGGGC
66 CCCGACCATGGGGC
* *
29088178 AGATTGAAACGATCCAATCTTTTACCTCTAA
1 AGATTGAAGCAATCCAATCTTTTACC-CTAA
29088209 AACTATAGAG
Statistics
Matches: 235, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
79 149 0.63
80 20 0.09
81 64 0.27
82 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (79 bp):
AGATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTCTTAC
CCCGACCATGGGGC
Found at i:29092589 original size:15 final size:16
Alignment explanation
Indices: 29092569--29092598 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29092559 ATATCATCAT
29092569 GAATA-TTTAAAATTA
1 GAATATTTTAAAATTA
29092584 GAATATTTTAAAATT
1 GAATATTTTAAAATT
29092599 TAGGGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
GAATATTTTAAAATTA
Found at i:29096274 original size:25 final size:25
Alignment explanation
Indices: 29096246--29096293 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
29096236 ATTCATTCCC
29096246 TCACAAAAGTAGAAAATTATAATTG
1 TCACAAAAGTAGAAAATTATAATTG
29096271 TCACAAAAGTAGAAAATTATAAT
1 TCACAAAAGTAGAAAATTATAAT
29096294 CGTATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.27
Consensus pattern (25 bp):
TCACAAAAGTAGAAAATTATAATTG
Found at i:29099364 original size:17 final size:17
Alignment explanation
Indices: 29099342--29099375 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
29099332 CAATTAAGGA
29099342 CAATTAATCACGGTGCT
1 CAATTAATCACGGTGCT
*
29099359 CAATTAATCATGGTGCT
1 CAATTAATCACGGTGCT
29099376 AACGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (17 bp):
CAATTAATCACGGTGCT
Found at i:29105175 original size:52 final size:52
Alignment explanation
Indices: 29105111--29105209 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
29105101 TAAAAAATTA
* *
29105111 ATAATATTTAACTAATTAATATTAAATAATTTAATAATATTTTCTTAACCAC
1 ATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTTCTTAACCAC
29105163 ATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTTCTTA
1 ATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTTCTTA
29105210 TCATTTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (52 bp):
ATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTTCTTAACCAC
Found at i:29105353 original size:21 final size:20
Alignment explanation
Indices: 29105321--29105359 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
29105311 GACAATGATT
29105321 TAAAAAAAAAGAATTGAGAA
1 TAAAAAAAAAGAATTGAGAA
*
29105341 TAAAAAATTAAGAATTGAG
1 TAAAAAA-AAAGAATTGAG
29105360 TTGAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (20 bp):
TAAAAAAAAAGAATTGAGAA
Found at i:29107307 original size:59 final size:59
Alignment explanation
Indices: 29107224--29107589 Score: 551
Period size: 59 Copynumber: 6.2 Consensus size: 59
29107214 AGACTGTCTG
* *
29107224 AAAATTACCA-TTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
*
29107282 AAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
* * * *
29107341 AAAATTACCATCTTACCCCTAAACTTTCCAAAATTCCA-TTTTGACCTCAATTTCACCA
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
29107399 AAAATTACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
* **
29107458 AAAGTTACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTCGACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
* * * * *
29107517 AAAATTACTATTTTACCCTTGAATTTTCCAAAATTCCATTTTTAACCCCGATTTCACCG
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
29107576 AAAATTACCATTTT
1 AAAATTACCATTTT
29107590 GCCTCGGTTA
Statistics
Matches: 282, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
57 4 0.01
58 59 0.21
59 216 0.77
60 3 0.01
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
Found at i:29107430 original size:117 final size:116
Alignment explanation
Indices: 29107224--29107588 Score: 554
Period size: 117 Copynumber: 3.1 Consensus size: 116
29107214 AGACTGTCTG
* * *
29107224 AAAATTACCATTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTA
1 AAAATTACCATTTACCCCTGAACTTTCCAAAATTCCA-TTTTGACCTCGATTTCACCAAAAATTA
*
29107289 CCATTTTACCC-CTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
65 CCATTTTACCCTC-GAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
* *
29107341 AAAATTACCATCTTACCCCTAAACTTTCCAAAATTCCATTTTGACCTCAATTTCACCAAAAATTA
1 AAAATTACCAT-TTACCCCTGAACTTTCCAAAATTCCATTTTGACCTCGATTTCACCAAAAATTA
29107406 CCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
65 CCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
*
29107458 AAAGTTACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTCGACCTCGATTTCACCAAAAAT
1 AAAATTACCA-TTTACCCCT-GAACTTTCCAAAATTCCATTTT-GACCTCGATTTCACCAAAAAT
* * * * *
29107522 TACTATTTTACCCTTGAATTTTCCAAAATTCCATTTTTAACCCCGATTTCACCG
63 TACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
29107576 AAAATTACCATTT
1 AAAATTACCATTT
29107589 TGCCTCGGTT
Statistics
Matches: 228, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
116 4 0.02
117 120 0.53
118 104 0.46
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (116 bp):
AAAATTACCATTTACCCCTGAACTTTCCAAAATTCCATTTTGACCTCGATTTCACCAAAAATTAC
CATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCA
Found at i:29107547 original size:176 final size:177
Alignment explanation
Indices: 29107224--29107589 Score: 567
Period size: 176 Copynumber: 2.1 Consensus size: 177
29107214 AGACTGTCTG
29107224 AAAATTACCA-TTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATT
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATT
*
29107288 ACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCAAAAATTACCATC
66 ACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTCAACCTCGATTTCACCAAAAATTACCATC
* *
29107353 TTACCCCTAAACTTTCCAAAATTCCA-TTTTGACCTCAATTTCACCA
131 TTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCA
* * *
29107399 AAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCTCGATTTCACCAAAAGTT
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATT
* * *
29107464 ACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTCGACCTCGATTTCACCAAAAATTACTAT
66 ACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTCAACCTCGATTTCACCAAAAATTACCAT
* * * * * *
29107528 TTTACCCTTGAATTTTCCAAAATTCCATTTTTAACCCCGATTTCACCG
130 CTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCA
29107576 AAAATTACCATTTT
1 AAAATTACCATTTT
29107590 GCCTCGGTTA
Statistics
Matches: 173, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
175 14 0.08
176 129 0.75
177 30 0.17
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (177 bp):
AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATT
ACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTCAACCTCGATTTCACCAAAAATTACCATC
TTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCA
Found at i:29107696 original size:15 final size:16
Alignment explanation
Indices: 29107669--29107714 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
29107659 ATTTATTTGC
*
29107669 ATCTGCATTTTATATT
1 ATCTGCATATTATATT
*
29107685 TTC-GCATATTAT-TT
1 ATCTGCATATTATATT
*
29107699 ATCTGCTTATTATATT
1 ATCTGCATATTATATT
29107715 GCTTCGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.24, C:0.13, G:0.07, T:0.57
Consensus pattern (16 bp):
ATCTGCATATTATATT
Done.