Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 27 of 120
Found at i:7044208 original size:88 final size:83
Alignment explanation
Indices: 7044078--7044291 Score: 204
Period size: 88 Copynumber: 2.5 Consensus size: 83
7044068 TAATAAAAGC
* * * ** *
7044078 AAGGGCTTAATTGCTTTTTATGAAAAAGTTTGAAGGTCTTTTTTATGCATTTT-AAATGTTCAAG
1 AAGGGTTTAATTGCTTTTTTTGAAAAA-TTTGAAGGTCTTTTTGATAAATTTTGAAA-GTTCAAA
* *
7044142 TA-CCAATTGAGTGCAAAAAAAA
64 TATCCAAATGAATGC---AAAAA
7044164 ATAGGGGTTTAATTGCTTTTTTTGAAAAGATTT-AATGG-CGTTTTTGATAAATTTTGAAAGTTC
1 A-A-GGGTTTAATTGCTTTTTTTGAAAA-ATTTGAA-GGTC-TTTTTGATAAATTTTGAAAGTTC
*
7044227 AAATATCTAAATGAATGCAAAAA
61 AAATATCCAAATGAATGCAAAAA
*
7044250 AAGGGTTTAATTGCTTTTTTTGTAAAAATTTG-AGGGCTTTTT
1 AAGGGTTTAATTGCTTTTTTTG-AAAAATTTGAAGGTCTTTTT
7044292 ACACCCTTAA
Statistics
Matches: 109, Mismatches: 9, Indels: 23
0.77 0.06 0.16
Matches are distributed among these distances:
83 7 0.06
84 26 0.24
85 5 0.05
86 7 0.06
87 4 0.04
88 47 0.43
89 13 0.12
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (83 bp):
AAGGGTTTAATTGCTTTTTTTGAAAAATTTGAAGGTCTTTTTGATAAATTTTGAAAGTTCAAATA
TCCAAATGAATGCAAAAA
Found at i:7052975 original size:27 final size:28
Alignment explanation
Indices: 7052944--7052996 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
7052934 TATAAACAAA
* *
7052944 AGTTTAGGTTTTAGG-TTTTATATTTTG
1 AGTTTAGGGTTTAGGATTTTAAATTTTG
*
7052971 AGTTTAGGGTTTGGGATTTTAAATTT
1 AGTTTAGGGTTTAGGATTTTAAATTT
7052997 ATTGTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (28 bp):
AGTTTAGGGTTTAGGATTTTAAATTTTG
Found at i:7056107 original size:18 final size:18
Alignment explanation
Indices: 7056084--7056119 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7056074 CAATTGTGAT
7056084 GTTATCTATGGGGTGGTA
1 GTTATCTATGGGGTGGTA
7056102 GTTATCTATGGGGTGGTA
1 GTTATCTATGGGGTGGTA
7056120 AGGGGTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.39, T:0.39
Consensus pattern (18 bp):
GTTATCTATGGGGTGGTA
Found at i:7056177 original size:3 final size:3
Alignment explanation
Indices: 7056169--7056199 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7056159 GGATTGACTT
7056169 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7056200 GACAGGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7058098 original size:13 final size:14
Alignment explanation
Indices: 7058073--7058105 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
7058063 TTGTTTCATT
7058073 GAAAATAATTTTTA
1 GAAAATAATTTTTA
*
7058087 TAAAAT-ATTTTTA
1 GAAAATAATTTTTA
7058100 GAAAAT
1 GAAAAT
7058106 CTATCAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
GAAAATAATTTTTA
Found at i:7058889 original size:16 final size:17
Alignment explanation
Indices: 7058853--7058889 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7058843 CAATTTATTT
*
7058853 TAATAATAAATTTTATA
1 TAATAATAAATTTTAAA
7058870 -AATAAT-AATTTTAAA
1 TAATAATAAATTTTAAA
7058885 TAATA
1 TAATA
7058890 TTCTTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATAAATTTTAAA
Found at i:7058940 original size:15 final size:15
Alignment explanation
Indices: 7058922--7058975 Score: 63
Period size: 15 Copynumber: 3.3 Consensus size: 15
7058912 ATTCAATATT
7058922 AATATATTAATTATA
1 AATATATTAATTATA
7058937 AATATTTATTACAATTATA
1 AATA--TATT--AATTATA
*
7058956 AATATATTAATAATA
1 AATATATTAATTATA
7058971 AATAT
1 AATAT
7058976 TTTGTAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 15 0.44
17 8 0.24
19 11 0.32
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATATTAATTATA
Found at i:7065164 original size:17 final size:16
Alignment explanation
Indices: 7065130--7065164 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7065120 CTCGCTACTA
*
7065130 TTATTAATTGCTATTT
1 TTATTAATTGATATTT
7065146 TTATTAATTGATCATTT
1 TTATTAATTGAT-ATTT
7065163 TT
1 TT
7065165 TGAAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (16 bp):
TTATTAATTGATATTT
Found at i:7070027 original size:22 final size:22
Alignment explanation
Indices: 7070002--7070048 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
7069992 TGATTGGAAC
7070002 TCTTTAACTACTTCTTCGTTTT
1 TCTTTAACTACTTCTTCGTTTT
* *
7070024 TCTTTAACTACTTTTTCTTTTT
1 TCTTTAACTACTTCTTCGTTTT
7070046 TCT
1 TCT
7070049 AAAAGTATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.21, G:0.02, T:0.64
Consensus pattern (22 bp):
TCTTTAACTACTTCTTCGTTTT
Found at i:7073596 original size:20 final size:20
Alignment explanation
Indices: 7073566--7073689 Score: 126
Period size: 20 Copynumber: 6.2 Consensus size: 20
7073556 TCGAAGTACG
*
7073566 TACAGGAGCACCGAAATGCA
1 TACAGGAGCACCGAAGTGCA
* * *
7073586 TATAGGGGCACAGAAGTGCA
1 TACAGGAGCACCGAAGTGCA
* *
7073606 TACAGGAGCACC-ATTGTGCG
1 TACAGGAGCACCGA-AGTGCA
*
7073626 TACAGGGGCACCGAAGTGCA
1 TACAGGAGCACCGAAGTGCA
* *
7073646 TACAGGAGCACC-ATTGTGCG
1 TACAGGAGCACCGA-AGTGCA
*
7073666 TACAGGGGCACCGAAGTGCA
1 TACAGGAGCACCGAAGTGCA
7073686 TACA
1 TACA
7073690 AAGGCACCAT
Statistics
Matches: 82, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.02
20 78 0.95
21 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (20 bp):
TACAGGAGCACCGAAGTGCA
Found at i:7073610 original size:40 final size:40
Alignment explanation
Indices: 7073589--7073723 Score: 200
Period size: 40 Copynumber: 3.4 Consensus size: 40
7073579 AAATGCATAT
*
7073589 AGGGGCACAGAAGTGCATACAGGAGCACCATTGTGCGTAC
1 AGGGGCACCGAAGTGCATACAGGAGCACCATTGTGCGTAC
7073629 AGGGGCACCGAAGTGCATACAGGAGCACCATTGTGCGTAC
1 AGGGGCACCGAAGTGCATACAGGAGCACCATTGTGCGTAC
* ** *
7073669 AGGGGCACCGAAGTGCATACA-AAGGCACCATAATGAGTAC
1 AGGGGCACCGAAGTGCATACAGGA-GCACCATTGTGCGTAC
*
7073709 AGGGGCACCGTAGTG
1 AGGGGCACCGAAGTG
7073724 AGATTCAGAC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 87 0.99
ACGTcount: A:0.30, C:0.23, G:0.33, T:0.14
Consensus pattern (40 bp):
AGGGGCACCGAAGTGCATACAGGAGCACCATTGTGCGTAC
Found at i:7073695 original size:20 final size:20
Alignment explanation
Indices: 7073548--7073697 Score: 94
Period size: 20 Copynumber: 7.5 Consensus size: 20
7073538 GATAAAAATT
* * *
7073548 CAAGGGCATCGAAGTACGTA
1 CAAGGGCACCGAAGTGCATA
*
7073568 C-AGGAGCACCGAAATGCATA
1 CAAGG-GCACCGAAGTGCATA
* * *
7073588 TAGGGGCACAGAAGTGCATA
1 CAAGGGCACCGAAGTGCATA
* *
7073608 C-AGGAGCACC-ATTGTGCGTA
1 CAAGG-GCACCGA-AGTGCATA
*
7073628 CAGGGGCACCGAAGTGCATA
1 CAAGGGCACCGAAGTGCATA
* *
7073648 C-AGGAGCACC-ATTGTGCGTA
1 CAAGG-GCACCGA-AGTGCATA
*
7073668 CAGGGGCACCGAAGTGCATA
1 CAAGGGCACCGAAGTGCATA
*
7073688 CAAAGGCACC
1 CAAGGGCACC
7073698 ATAATGAGTA
Statistics
Matches: 96, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
19 9 0.09
20 79 0.82
21 8 0.08
ACGTcount: A:0.32, C:0.24, G:0.31, T:0.13
Consensus pattern (20 bp):
CAAGGGCACCGAAGTGCATA
Found at i:7073725 original size:20 final size:20
Alignment explanation
Indices: 7073606--7073725 Score: 86
Period size: 20 Copynumber: 6.0 Consensus size: 20
7073596 CAGAAGTGCA
* * *
7073606 TACAGGAGCACCATTGTGCG
1 TACAGGGGCACCATAGTGAG
7073626 TACAGGGGCACCGA-AGTGCA-
1 TACAGGGGCACC-ATAGTG-AG
* * *
7073646 TACAGGAGCACCATTGTGCG
1 TACAGGGGCACCATAGTGAG
7073666 TACAGGGGCACCGA-AGTGCA-
1 TACAGGGGCACC-ATAGTG-AG
** *
7073686 TACAAAGGCACCATAATGAG
1 TACAGGGGCACCATAGTGAG
*
7073706 TACAGGGGCACCGTAGTGAG
1 TACAGGGGCACCATAGTGAG
7073726 ATTCAGACTA
Statistics
Matches: 76, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
19 3 0.04
20 71 0.93
21 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.32, T:0.15
Consensus pattern (20 bp):
TACAGGGGCACCATAGTGAG
Found at i:7076105 original size:35 final size:35
Alignment explanation
Indices: 7076059--7076130 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
7076049 ATCATTAATC
*
7076059 ACAATCTTATCCCCTTTCCCTACGCTCCAGCAACT
1 ACAATCTTATCCCCTTTCCCTACCCTCCAGCAACT
*
7076094 ACAATCTTATCCCCTTTCCCTACCCTCCAGTAACT
1 ACAATCTTATCCCCTTTCCCTACCCTCCAGCAACT
7076129 AC
1 AC
7076131 CATCATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.43, G:0.04, T:0.29
Consensus pattern (35 bp):
ACAATCTTATCCCCTTTCCCTACCCTCCAGCAACT
Found at i:7108313 original size:13 final size:13
Alignment explanation
Indices: 7108295--7108324 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7108285 TCTGGAAAAA
7108295 CTCCACAAATTGT
1 CTCCACAAATTGT
7108308 CTCCACAAATTGT
1 CTCCACAAATTGT
7108321 CTCC
1 CTCC
7108325 CAACTAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.37, G:0.07, T:0.30
Consensus pattern (13 bp):
CTCCACAAATTGT
Found at i:7118822 original size:23 final size:23
Alignment explanation
Indices: 7118796--7118872 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
7118786 AGTGCTGGGT
*
7118796 AACAGAGGGCACACAAAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
*
7118819 AACAGAGAGTACACAAAGTGCTAA
1 AACAGAGAGCACACAAAGTGCT-A
* * *
7118843 TAATAGAGAGCGCACACAGTGCTA
1 -AACAGAGAGCACACAAAGTGCTA
*
7118867 ATCAGA
1 AACAGA
7118873 ACGGTTCATC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
23 24 0.55
24 2 0.05
25 18 0.41
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.13
Consensus pattern (23 bp):
AACAGAGAGCACACAAAGTGCTA
Found at i:7120690 original size:19 final size:19
Alignment explanation
Indices: 7120649--7120688 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7120639 TCTTTTTAAA
*
7120649 TTTAATCTTTTTCAATTCT
1 TTTAATCTCTTTCAATTCT
7120668 TTTAATCTCTTT-AATTCT
1 TTTAATCTCTTTCAATTCT
7120686 TTT
1 TTT
7120689 TAGGGTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.20, C:0.15, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTAATCTCTTTCAATTCT
Found at i:7122026 original size:29 final size:31
Alignment explanation
Indices: 7121989--7122063 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
7121979 AAAATTAAAA
*
7121989 AAAAATTATGTATAAAATTACACA-A-AATC
1 AAAATTTATGTATAAAATTACACATATAATC
* *
7122018 AAAATTTATATATAAAATTACTCATTATAATC
1 AAAATTTATGTATAAAATTACACA-TATAATC
7122050 -AAATTTATGTATAA
1 AAAATTTATGTATAA
7122064 TTTTAAGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 21 0.54
31 14 0.36
32 4 0.10
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (31 bp):
AAAATTTATGTATAAAATTACACATATAATC
Found at i:7124884 original size:3 final size:3
Alignment explanation
Indices: 7124876--7124920 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
7124866 TATGCAGTAA
* * *
7124876 AAG AAG AAG -AG AAA AAG AAG AAG AAG AAG AAA AAG AGG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7124921 GAAAAAATGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7124898 original size:17 final size:17
Alignment explanation
Indices: 7124876--7124926 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
7124866 TATGCAGTAA
7124876 AAGAAGAAGAGAAAAAG
1 AAGAAGAAGAGAAAAAG
7124893 AAGAAGAAGAAGAAAAAG
1 AAGAAGAAG-AGAAAAAG
*
7124911 AGGAAGAAGAGAAAAA
1 AAGAAGAAGAGAAAAA
7124927 ATGGAGATGC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 16 0.50
18 16 0.50
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAGAAAAAG
Found at i:7130390 original size:14 final size:14
Alignment explanation
Indices: 7130371--7130400 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7130361 TAGATTTAAC
7130371 GGTTTGACTAATGG
1 GGTTTGACTAATGG
7130385 GGTTTGACTAATGG
1 GGTTTGACTAATGG
7130399 GG
1 GG
7130401 GTACCAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33
Consensus pattern (14 bp):
GGTTTGACTAATGG
Found at i:7133729 original size:17 final size:18
Alignment explanation
Indices: 7133707--7133746 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
7133697 TAATTTTTTA
*
7133707 TTTTTTTATTTTCCTTT-
1 TTTTTTTATTCTCCTTTG
*
7133724 TTTTTTTCTTCTCCTTTG
1 TTTTTTTATTCTCCTTTG
7133742 TTTTT
1 TTTTT
7133747 CTATCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTTTTATTCTCCTTTG
Found at i:7135609 original size:21 final size:21
Alignment explanation
Indices: 7135582--7135761 Score: 173
Period size: 21 Copynumber: 8.6 Consensus size: 21
7135572 AATATCTAAA
7135582 AGAGTTCACATAACATATAAG
1 AGAGTTCACATAACATATAAG
* * * * *
7135603 AGTGTTCGCACAACATCTAAA
1 AGAGTTCACATAACATATAAG
*
7135624 AGAGTTCTCATAACATATAAG
1 AGAGTTCACATAACATATAAG
* *
7135645 AGGGTTCGCATAACATATAAG
1 AGAGTTCACATAACATATAAG
* * * *
7135666 AGAGTTTACACAACATCTAAA
1 AGAGTTCACATAACATATAAG
* *
7135687 AGAGTTCGCATAATATATAAG
1 AGAGTTCACATAACATATAAG
*
7135708 AGAGTTCACATAACATGTAA-
1 AGAGTTCACATAACATATAAG
* * * *
7135728 AGTAGTTCACACATCATGTAAA
1 AG-AGTTCACATAACATATAAG
7135750 AGAGTTCACATA
1 AGAGTTCACATA
7135762 TGCATGTATC
Statistics
Matches: 127, Mismatches: 30, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
20 2 0.02
21 123 0.97
22 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (21 bp):
AGAGTTCACATAACATATAAG
Found at i:7135621 original size:42 final size:42
Alignment explanation
Indices: 7135578--7135761 Score: 199
Period size: 42 Copynumber: 4.4 Consensus size: 42
7135568 ATGCAATATC
*
7135578 TAAAAGAGTTCACATAACATATAAGAGTGTTCGCACAACATC
1 TAAAAGAGTTCACATAACATATAAGAGTGTTCGCACAACATA
* * *
7135620 TAAAAGAGTTCTCATAACATATAAGAGGGTTCGCATAACATA
1 TAAAAGAGTTCACATAACATATAAGAGTGTTCGCACAACATA
* * * * * * * *
7135662 TAAGAGAGTTTACACAACATCTAAAAGAGTTCGCATAATATA
1 TAAAAGAGTTCACATAACATATAAGAGTGTTCGCACAACATA
* * * * *
7135704 TAAGAGAGTTCACATAACATGTAA-AGTAGTTCACACATCATG
1 TAAAAGAGTTCACATAACATATAAGAGT-GTTCGCACAACATA
7135746 TAAAAGAGTTCACATA
1 TAAAAGAGTTCACATA
7135762 TGCATGTATC
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
41 2 0.02
42 117 0.98
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (42 bp):
TAAAAGAGTTCACATAACATATAAGAGTGTTCGCACAACATA
Found at i:7135657 original size:63 final size:63
Alignment explanation
Indices: 7135582--7135761 Score: 245
Period size: 63 Copynumber: 2.9 Consensus size: 63
7135572 AATATCTAAA
* *
7135582 AGAGTTCACATAACATATAAGAGTGTTCGCACAACATCTAAAAGAGTTCTCATAACATATAAG
1 AGAGTTCACATAACATATAAGAGTGTTCACACAACATCTAAAAGAGTTCACATAACATATAAG
* * * * * *
7135645 AGGGTTCGCATAACATATAAGAGAGTTTACACAACATCTAAAAGAGTTCGCATAATATATAAG
1 AGAGTTCACATAACATATAAGAGTGTTCACACAACATCTAAAAGAGTTCACATAACATATAAG
* * *
7135708 AGAGTTCACATAACATGTAA-AGTAGTTCACACATCATGTAAAAGAGTTCACATA
1 AGAGTTCACATAACATATAAGAGT-GTTCACACAACATCTAAAAGAGTTCACATA
7135762 TGCATGTATC
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
62 2 0.02
63 99 0.98
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (63 bp):
AGAGTTCACATAACATATAAGAGTGTTCACACAACATCTAAAAGAGTTCACATAACATATAAG
Found at i:7138785 original size:14 final size:15
Alignment explanation
Indices: 7138750--7138789 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
7138740 ATTTTATAAC
7138750 TTAAA-TTT-AATAT
1 TTAAATTTTCAATAT
7138763 TTAAATTTTCAATAT
1 TTAAATTTTCAATAT
*
7138778 TTAATTTTTCAA
1 TTAAATTTTCAA
7138790 GACTTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.21
14 3 0.12
15 16 0.67
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAAATTTTCAATAT
Found at i:7140265 original size:22 final size:21
Alignment explanation
Indices: 7140212--7140266 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
7140202 TTAAAACTAT
7140212 AATTTTAAAATTATGAAAAAA
1 AATTTTAAAATTATGAAAAAA
* *
7140233 ACTATTCAAAATT-TGATAAATAA
1 AAT-TTTAAAATTATGA-AAA-AA
7140256 AATTTTAAAAT
1 AATTTTAAAAT
7140267 AGTGTATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 5 0.19
22 18 0.67
23 4 0.15
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (21 bp):
AATTTTAAAATTATGAAAAAA
Found at i:7140418 original size:22 final size:24
Alignment explanation
Indices: 7140384--7140438 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
7140374 GAAAAAGTTC
* *
7140384 TTTTATAATTTTTGTAAG-TTTT-T
1 TTTTA-AAATTTTGGAAGCTTTTAT
7140407 TTTTAAAATTTTGGAAGCTTTTAT
1 TTTTAAAATTTTGGAAGCTTTTAT
7140431 TTTCTAAA
1 TTT-TAAA
7140439 TATAAAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 10 0.37
23 9 0.33
24 4 0.15
25 4 0.15
ACGTcount: A:0.27, C:0.04, G:0.09, T:0.60
Consensus pattern (24 bp):
TTTTAAAATTTTGGAAGCTTTTAT
Found at i:7140451 original size:24 final size:23
Alignment explanation
Indices: 7140424--7140471 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
7140414 ATTTTGGAAG
7140424 CTTTT-ATTTTCTAAATATAAAATT
1 CTTTTAATTTTC-AAAT-TAAAATT
7140448 CTTTTACATTTTCAAATTAAAATT
1 CTTTTA-ATTTTCAAATTAAAATT
7140472 AAAAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 12 0.55
25 4 0.18
26 6 0.27
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (23 bp):
CTTTTAATTTTCAAATTAAAATT
Found at i:7141434 original size:21 final size:21
Alignment explanation
Indices: 7141410--7141450 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7141400 TTTTTTATTC
7141410 TATTCGAAAAATTTCAAATTG
1 TATTCGAAAAATTTCAAATTG
* *
7141431 TATTTGAAAATTTTCAAATT
1 TATTCGAAAAATTTCAAATT
7141451 AAGTTCAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (21 bp):
TATTCGAAAAATTTCAAATTG
Found at i:7147517 original size:14 final size:15
Alignment explanation
Indices: 7147498--7147527 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7147488 ATATTGAATA
7147498 TTTTAAA-TTATTAT
1 TTTTAAATTTATTAT
7147512 TTTTAAATTTATTAT
1 TTTTAAATTTATTAT
7147527 T
1 T
7147528 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATTTATTAT
Found at i:7154502 original size:12 final size:12
Alignment explanation
Indices: 7154485--7154510 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7154475 AAATCTACCA
7154485 GTAGTTGAGAAT
1 GTAGTTGAGAAT
7154497 GTAGTTGAGAAT
1 GTAGTTGAGAAT
7154509 GT
1 GT
7154511 GCCTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (12 bp):
GTAGTTGAGAAT
Found at i:7158538 original size:21 final size:21
Alignment explanation
Indices: 7158512--7158557 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7158502 CTCTCCTTCC
* *
7158512 TCCTTG-TACTTCTTCTTTTTG
1 TCCTTGCT-CTTCCTCTTCTTG
7158533 TCCTTGCTCTTCCTCTTCTTG
1 TCCTTGCTCTTCCTCTTCTTG
7158554 TCCT
1 TCCT
7158558 GCGAACCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.02, C:0.33, G:0.09, T:0.57
Consensus pattern (21 bp):
TCCTTGCTCTTCCTCTTCTTG
Found at i:7160694 original size:14 final size:14
Alignment explanation
Indices: 7160677--7160716 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
7160667 AACATCAATG
*
7160677 GTCAAAGGTCAACA
1 GTCAATGGTCAACA
*
7160691 GTCAATGGTTAACA
1 GTCAATGGTCAACA
7160705 GTCAATGGTCAA
1 GTCAATGGTCAA
7160717 TGATTCGATC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (14 bp):
GTCAATGGTCAACA
Found at i:7160804 original size:20 final size:20
Alignment explanation
Indices: 7160770--7160814 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
7160760 TGGTCCACTT
7160770 GGTTTGGGTCAAAGG-TTTG
1 GGTTTGGGTCAAAGGTTTTG
*
7160789 GGTTTGGTTCCAAAGGTTTTG
1 GGTTTGGGT-CAAAGGTTTTG
7160810 GGTTT
1 GGTTT
7160815 ATTGGGTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 6 0.26
21 9 0.39
ACGTcount: A:0.13, C:0.07, G:0.38, T:0.42
Consensus pattern (20 bp):
GGTTTGGGTCAAAGGTTTTG
Found at i:7165875 original size:354 final size:354
Alignment explanation
Indices: 7165219--7165926 Score: 1281
Period size: 354 Copynumber: 2.0 Consensus size: 354
7165209 ATATGCTTTA
7165219 TCAGCTAGCCTATCCAGCATCTGGTCAATAAAAGGTAGTGGAAAGTGGTCCTTTTTTGTAGCCGC
1 TCAGCTAGCCTATCCAGCATCTGGTCAATAAAAGGTAGTGGAAAGTGGTCCTTTTTTGTAGCCGC
*
7165284 ATTCAGTCAACGATAATCCATGCATGCTCGCCAGCTAGTCACAATGCAAGTAGGGATTAACTCGT
66 ATTCAGTCAACGATAATCCATGCATGCTCGCCAGCTAGTCACAATGCAAGTAGGGATTAACTCAT
* * *
7165349 TTTTATCATTGCTCACAACAGTGAAACCATTTTTCTTGGGGACACATTGGATAAGGCTCACCCAA
131 TTTTATCATTGCTCACAACAGTGAAACCACTCTTCTTGGGGACACATTAGATAAGGCTCACCCAA
* *
7165414 TTGCTATCAAAAATGGGGTAGATGATGCCCGCGTCTAGCCACTTGATAATCTCTTTTTTCACTAC
196 TTGCTATCAAAAATGGGGTAGATGATGCCCGCGTCTAGCCACTTGATAATATCTTTCTTCACTAC
*
7165479 TTCTTTCATCTTCTCATTGAGTCGTCGCTGTTGCTCAATAGATTACTTCCCTTCATCTTCAAACC
261 TTCTTTCATCTTCTCATAGAGTCGTCGCTGTTGCTCAATAGATTACTTCCCTTCATCTTCAAACC
*
7165544 TGATCTTGTGCATGCAAAAAGAGGGACTG
326 TAATCTTGTGCATGCAAAAAGAGGGACTG
7165573 TCAGCTAGCCTATCCAGCATCTGGTCAATAAAAGGTAGTGGAAAGTGGTCCTTTTTTGTAGCCGC
1 TCAGCTAGCCTATCCAGCATCTGGTCAATAAAAGGTAGTGGAAAGTGGTCCTTTTTTGTAGCCGC
* * *
7165638 ATTCAGTCAACGATAATCCATGCATGCTTGCCAGCTAGTCAGAATGCGAGTAGGGATTAACTCAT
66 ATTCAGTCAACGATAATCCATGCATGCTCGCCAGCTAGTCACAATGCAAGTAGGGATTAACTCAT
*
7165703 TTTTATCATTGCTCACAATAGTGAAACCACTCTTCTTGGGGACACATTAGATAAGGCTCACCCAA
131 TTTTATCATTGCTCACAACAGTGAAACCACTCTTCTTGGGGACACATTAGATAAGGCTCACCCAA
* *
7165768 TTGCTATCAGAAATGGGGTAGATGATGCCCGTGTCTAGCCACTTGATAATATCTTTCTTCACTAC
196 TTGCTATCAAAAATGGGGTAGATGATGCCCGCGTCTAGCCACTTGATAATATCTTTCTTCACTAC
*
7165833 TTCTTTCATCTTCTCATAGAGTCGTCGCTGTTGCTTAATAGATTACTTCCCTTCATCTTCAAACC
261 TTCTTTCATCTTCTCATAGAGTCGTCGCTGTTGCTCAATAGATTACTTCCCTTCATCTTCAAACC
7165898 TAATCTTGTGCATGCAAAAAGAGGGACTG
326 TAATCTTGTGCATGCAAAAAGAGGGACTG
7165927 ATTCCTCTGA
Statistics
Matches: 339, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
354 339 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (354 bp):
TCAGCTAGCCTATCCAGCATCTGGTCAATAAAAGGTAGTGGAAAGTGGTCCTTTTTTGTAGCCGC
ATTCAGTCAACGATAATCCATGCATGCTCGCCAGCTAGTCACAATGCAAGTAGGGATTAACTCAT
TTTTATCATTGCTCACAACAGTGAAACCACTCTTCTTGGGGACACATTAGATAAGGCTCACCCAA
TTGCTATCAAAAATGGGGTAGATGATGCCCGCGTCTAGCCACTTGATAATATCTTTCTTCACTAC
TTCTTTCATCTTCTCATAGAGTCGTCGCTGTTGCTCAATAGATTACTTCCCTTCATCTTCAAACC
TAATCTTGTGCATGCAAAAAGAGGGACTG
Found at i:7168957 original size:21 final size:21
Alignment explanation
Indices: 7168918--7169007 Score: 58
Period size: 21 Copynumber: 4.3 Consensus size: 21
7168908 GTTGACCAAT
* * *
7168918 CGTTAATCGTTGACAGTTGAT
1 CGTTGATCATTGACAGTTGAC
* *
7168939 TGTTGATCATTGACTGTTGAC
1 CGTTGATCATTGACAGTTGAC
* *
7168960 CGTTGATCGTTGACCA-TTGAT
1 CGTTGATCATTGA-CAGTTGAC
* * *
7168981 CGTT-AACTATTGACCGCTGAC
1 CGTTGATC-ATTGACAGTTGAC
7169002 CGTTGA
1 CGTTGA
7169008 CAGTTGATTT
Statistics
Matches: 51, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
20 3 0.06
21 46 0.90
22 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (21 bp):
CGTTGATCATTGACAGTTGAC
Found at i:7168970 original size:7 final size:7
Alignment explanation
Indices: 7168916--7168984 Score: 52
Period size: 7 Copynumber: 9.9 Consensus size: 7
7168906 CCGTTGACCA
*
7168916 ATCGTTA
1 ATCGTTG
7168923 ATCGTTG
1 ATCGTTG
7168930 A-CAGTTG
1 ATC-GTTG
*
7168937 ATTGTTG
1 ATCGTTG
*
7168944 ATCATTG
1 ATCGTTG
7168951 A-CTGTTG
1 ATC-GTTG
*
7168958 ACCGTTG
1 ATCGTTG
7168965 ATCGTTG
1 ATCGTTG
* *
7168972 ACCATTG
1 ATCGTTG
7168979 ATCGTT
1 ATCGTT
7168985 AACTATTGAC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
6 2 0.04
7 45 0.94
8 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (7 bp):
ATCGTTG
Found at i:7168981 original size:14 final size:14
Alignment explanation
Indices: 7168923--7169007 Score: 66
Period size: 14 Copynumber: 6.1 Consensus size: 14
7168913 CCAATCGTTA
7168923 ATCGTTGA-CAGTTG
1 ATCGTTGACCA-TTG
* *
7168937 ATTGTTGATCATTG
1 ATCGTTGACCATTG
*
7168951 A-CTGTTGACCGTTG
1 ATC-GTTGACCATTG
7168965 ATCGTTGACCATTG
1 ATCGTTGACCATTG
* *
7168979 ATCGTTAACTATTG
1 ATCGTTGACCATTG
* * *
7168993 ACCGCTGACCGTTG
1 ATCGTTGACCATTG
7169007 A
1 A
7169008 CAGTTGATTT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
14 53 0.95
15 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (14 bp):
ATCGTTGACCATTG
Found at i:7169014 original size:21 final size:21
Alignment explanation
Indices: 7168956--7169014 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
7168946 CATTGACTGT
*
7168956 TGACCGTTGATC-GTTGACCAT
1 TGACCGTTGA-CAGTTGACCAC
* * *
7168977 TGATCGTTAACTA-TTGACCGC
1 TGACCGTTGAC-AGTTGACCAC
7168998 TGACCGTTGACAGTTGA
1 TGACCGTTGACAGTTGA
7169015 TTTTGACCGT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (21 bp):
TGACCGTTGACAGTTGACCAC
Found at i:7169032 original size:13 final size:13
Alignment explanation
Indices: 7168948--7169057 Score: 76
Period size: 14 Copynumber: 8.2 Consensus size: 13
7168938 TTGTTGATCA
* *
7168948 TTGACTGTTGACCG
1 TTGACCGTTGA-CT
* *
7168962 TTGATCGTTGACCA
1 TTGACCGTTGA-CT
* *
7168976 TTGATCGTTAACT
1 TTGACCGTTGACT
* *
7168989 ATTGACCGCTGACCG
1 -TTGACCGTTGA-CT
* *
7169004 TTGACAGTTGATT
1 TTGACCGTTGACT
*
7169017 TTGACCGTTAACT
1 TTGACCGTTGACT
7169030 TTGACCGTTGACT
1 TTGACCGTTGACT
*
7169043 TTGACTGTTGACT
1 TTGACCGTTGACT
7169056 TT
1 TT
7169058 TTTCAAAAAA
Statistics
Matches: 76, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
13 37 0.49
14 38 0.50
15 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (13 bp):
TTGACCGTTGACT
Found at i:7169039 original size:26 final size:26
Alignment explanation
Indices: 7169004--7169057 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
7168994 CCGCTGACCG
*
7169004 TTGACAGTTGATTTTGACCGTTAACT
1 TTGACAGTTGACTTTGACCGTTAACT
* * *
7169030 TTGACCGTTGACTTTGACTGTTGACT
1 TTGACAGTTGACTTTGACCGTTAACT
7169056 TT
1 TT
7169058 TTTCAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (26 bp):
TTGACAGTTGACTTTGACCGTTAACT
Found at i:7169735 original size:2 final size:2
Alignment explanation
Indices: 7169728--7169797 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
7169718 GATTGAGGCA
7169728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7169770 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7169798 GATAATCATG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7176402 original size:22 final size:22
Alignment explanation
Indices: 7176370--7176411 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7176360 AAACCATTGA
*
7176370 CCGACCGTTGACCGATCGTTGG
1 CCGACCATTGACCGATCGTTGG
*
7176392 CCGACCATTGACTGATCGTT
1 CCGACCATTGACCGATCGTT
7176412 AACTAATCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.31, G:0.26, T:0.26
Consensus pattern (22 bp):
CCGACCATTGACCGATCGTTGG
Found at i:7176446 original size:14 final size:14
Alignment explanation
Indices: 7176427--7176525 Score: 76
Period size: 14 Copynumber: 7.2 Consensus size: 14
7176417 ATCGTTGATC
*
7176427 GACCATTGACTGTT
1 GACCATTGACCGTT
*
7176441 GACCATTGACAGTT
1 GACCATTGACCGTT
** *
7176455 GACTGTTGATCGTT
1 GACCATTGACCGTT
* *
7176469 GATCATTGGCCGTT
1 GACCATTGACCGTT
* *
7176483 GACTATTGACCGCT
1 GACCATTGACCGTT
* *
7176497 GACCATTAACCGCT
1 GACCATTGACCGTT
*
7176511 GA-C-TTGACCATT
1 GACCATTGACCGTT
7176523 GAC
1 GAC
7176526 TTATTTTGAA
Statistics
Matches: 65, Mismatches: 19, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
12 8 0.12
13 1 0.02
14 56 0.86
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (14 bp):
GACCATTGACCGTT
Found at i:7177636 original size:3 final size:3
Alignment explanation
Indices: 7177593--7177621 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7177583 ATTTATGTTA
7177593 TAT TAT T-T TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7177622 GATTTTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:7179264 original size:52 final size:52
Alignment explanation
Indices: 7179189--7179484 Score: 375
Period size: 52 Copynumber: 5.7 Consensus size: 52
7179179 TAAACGAAGA
*
7179189 GGTCCGATGA-TAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAAC
* * *
7179240 GGTCCGATGACTAAGTGTCTTCGTGAGTATATGAATCCTTTACAGATTAAAT
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAAC
*
7179292 GGTCTGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAAC
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAAC
* *
7179344 GGTCTGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAGA-
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAA-AC
* * * * *
7179396 GGTCCGATGACTCTAA--GTCATCGTGAGTATACGAATCCCTTGCAGATTATAAA
1 GGTCCGATGA--CTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTA-AAC
* * * * *
7179449 GGTCTGGTGCCTATGTGTCATCATGAGTATATGAAT
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAAT
7179485 GAAGTGAAAT
Statistics
Matches: 216, Mismatches: 21, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
51 13 0.06
52 172 0.80
53 27 0.12
54 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (52 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAAC
Found at i:7180222 original size:21 final size:22
Alignment explanation
Indices: 7180195--7180253 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
7180185 TAGATGTATG
7180195 ACATGTATCGGTAGAAACTA-T
1 ACATGTATCGGTAGAAACTAGT
* *
7180216 ACTTGTATCGATAG-AACTAGT
1 ACATGTATCGGTAGAAACTAGT
* *
7180237 ACAGGTACCGGTAGAAA
1 ACATGTATCGGTAGAAA
7180254 TCTGCATCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 5 0.17
21 23 0.77
22 2 0.07
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.25
Consensus pattern (22 bp):
ACATGTATCGGTAGAAACTAGT
Found at i:7186302 original size:52 final size:52
Alignment explanation
Indices: 7186229--7186574 Score: 349
Period size: 52 Copynumber: 6.6 Consensus size: 52
7186219 TAAACGAAGA
7186229 GGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
1 GGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
* *
7186281 GGTTCAATGACTAAATGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
1 GGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
* * * **
7186333 GGTTCGATGACTAAGTGTCATCGTAAGTATATGAATCCTTTATGCTTTAAAC
1 GGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
* * * *
7186385 GG-CCAGAAGACTAAGTGTCAACGTGAGTATATGAATCCTTTACGGATTAAAC
1 GGTTC-GATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
* * * *
7186437 GG-TCTGTTTACTAAGTGTCATCATGAGTATATGGATCCTTTATGGATTAAGA-
1 GGTTC-GATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAA-AC
** * * * * * * * *
7186489 GG-TCTGATGACTTTGTGTCATTGTAAGTATACGAATCCCTTGCAGATTATAAA
1 GGTTC-GATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTA-AAC
* * * * *
7186542 TGTACGGTGGCTATGTGTCATCGTGAGTATATG
1 GGTTCGATGACTAAGTGTCATCGTGAGTATATG
7186575 AATGAAGTGA
Statistics
Matches: 243, Mismatches: 46, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
51 1 0.00
52 216 0.89
53 25 0.10
54 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (52 bp):
GGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAAC
Found at i:7186525 original size:156 final size:156
Alignment explanation
Indices: 7186237--7186526 Score: 424
Period size: 156 Copynumber: 1.9 Consensus size: 156
7186227 GAGGTTCGAT
* *
7186237 GACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAAACGGTTCAATGACTAAATGTCAT
1 GACTAAGTGTCAACGTGAGTATATGAATCCTTTACGGATTAAACGGTTCAATGACTAAATGTCAT
* *
7186302 CGTGAGTATATGGATCCTTTACGGATTAAACGGTTCGATGACTAAGTGTCATCGTAAGTATATGA
66 CATGAGTATATGGATCCTTTACGGATTAAACGGTTCGATGACTAAGTGTCATCGTAAGTATACGA
7186367 ATCCTTTATGCTTTAAACGGCCAGAA
131 ATCCTTTATGCTTTAAACGGCCAGAA
** * *
7186393 GACTAAGTGTCAACGTGAGTATATGAATCCTTTACGGATTAAACGG-TCTGTTTACTAAGTGTCA
1 GACTAAGTGTCAACGTGAGTATATGAATCCTTTACGGATTAAACGGTTC-AATGACTAAATGTCA
* ** *
7186457 TCATGAGTATATGGATCCTTTATGGATTAAGA-GG-TCTGATGACTTTGTGTCATTGTAAGTATA
65 TCATGAGTATATGGATCCTTTACGGATTAA-ACGGTTC-GATGACTAAGTGTCATCGTAAGTATA
7186520 CGAATCC
128 CGAATCC
7186527 CTTGCAGATT
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
155 4 0.03
156 114 0.96
157 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (156 bp):
GACTAAGTGTCAACGTGAGTATATGAATCCTTTACGGATTAAACGGTTCAATGACTAAATGTCAT
CATGAGTATATGGATCCTTTACGGATTAAACGGTTCGATGACTAAGTGTCATCGTAAGTATACGA
ATCCTTTATGCTTTAAACGGCCAGAA
Found at i:7191362 original size:17 final size:17
Alignment explanation
Indices: 7191340--7191374 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7191330 TATAGACTCG
*
7191340 TTTAGATATATTTAGTA
1 TTTAGATATAATTAGTA
7191357 TTTAGATATAATTAGTA
1 TTTAGATATAATTAGTA
7191374 T
1 T
7191375 AATATAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
TTTAGATATAATTAGTA
Found at i:7193634 original size:36 final size:36
Alignment explanation
Indices: 7193587--7193658 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
7193577 ATAAGATCAT
*
7193587 TTCAATTGGTGAGAATCCGTTACTTGAATGAAACTA
1 TTCAATTGGTGAGAATCCATTACTTGAATGAAACTA
7193623 TTCAATTGGTGAGAATCCATTACTTGAATGAAACTA
1 TTCAATTGGTGAGAATCCATTACTTGAATGAAACTA
7193659 GATCTTGTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (36 bp):
TTCAATTGGTGAGAATCCATTACTTGAATGAAACTA
Found at i:7203590 original size:21 final size:21
Alignment explanation
Indices: 7203564--7203603 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7203554 TAATGCAGAC
7203564 TTCTACCGATACAAGTGACAG
1 TTCTACCGATACAAGTGACAG
7203585 TTCTACCGATACAAGTGAC
1 TTCTACCGATACAAGTGAC
7203604 TCTCTTACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (21 bp):
TTCTACCGATACAAGTGACAG
Found at i:7203612 original size:21 final size:20
Alignment explanation
Indices: 7203564--7203621 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
7203554 TAATGCAGAC
7203564 TTCTACCGATACAAGTGACA
1 TTCTACCGATACAAGTGACA
7203584 GTTCTACCGATACAAGTGAC-
1 -TTCTACCGATACAAGTGACA
*
7203604 TCTCTTACCAATACAAGT
1 T-TC-TACCGATACAAGT
7203622 CTTACTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.03
20 2 0.06
21 31 0.91
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (20 bp):
TTCTACCGATACAAGTGACA
Found at i:7210121 original size:424 final size:424
Alignment explanation
Indices: 7209323--7210171 Score: 1385
Period size: 424 Copynumber: 2.0 Consensus size: 424
7209313 CTCCTCGCTT
* *
7209323 ACTTTATAGTTGTCAACAGAAGTACCTAGGAGTTCACCATTGCTATAGTCTTCTACTACATCAGC
1 ACTTTATAGTTGTCAACAGAAGTACCTAGGAGTTCACCATCGCTATAGTCTTCTACTACATCAAC
* * * * *
7209388 TTCACCGGATTATTTTGGTTGTTTTCCTTTTTGATTTGCAGTCTCCCTTTTGATCTTGTTCTATA
66 TTCACCGGATTATTCTGATTGTTTTCCCTTTTGATTCGCAGTCTCCCTTTTGATCTTATTCTATA
* * * *
7209453 ACTTATAGCACTCAAACTTAATGTGCCTTTTCTTTTTGTAAAAATTACAGGTTTTGCCTTTGTTT
131 ACTTATAGCACTCAAACTTAATGTGCCCTTTATTTTTGTAAAAATTACAAGTTTTGCCTCTGTTT
* * *
7209518 GAAGATCTCGATCTACCCTTAGATTTATTGCATGGATTTCATTCTTGTGTCCTCCTATGATTATC
196 GAAGATCTCGATCTACCCTTAGATTTATTGCAAGGATTTCATTCTTGTGTCCTCCCACGATTATC
* *
7209583 ACTAATATTTCATTCTTGTCTTCTAAGAACAATGAGACCCTCTCCCTAAAAGTCGAATCCAACCA
261 ACTAATATTTCATTCTTGTCTCCCAAGAACAATGAGACCCTCTCCCTAAAAGTCGAATCCAACCA
* * * *
7209648 CAAGATGCTTCATCTTGTCATACGTGGCTAACAAAGTTTAGACTTCTTCAACTGTGAGAGATTCG
326 CAAGATGATTCATCTTGTCATACGAGGCTAACAAAGTATAGACTTCTTCAACTATGAGAGATTCG
7209713 CGACTATACAAATTGTATCTCTAAAGGTTGAATA
391 CGACTATACAAATTGTATCTCTAAAGGTTGAATA
* * *
7209747 ACTTTATAGTTGTCAACAGAAGTA-ATCAGGAGTTCACTATCGTTATAGTCTTCTACTACATCAA
1 ACTTTATAGTTGTCAACAGAAGTACCT-AGGAGTTCACCATCGCTATAGTCTTCTACTACATCAA
*
7209811 CTTCACCGGATTATTCTGATTGTTTTCCCTTTTGATTCGCAGTCTCCCTTTTGATCTTATTCTGT
65 CTTCACCGGATTATTCTGATTGTTTTCCCTTTTGATTCGCAGTCTCCCTTTTGATCTTATTCTAT
*
7209876 AACTTATAGCACTCAAACTTAATGTGCCCTTTATTTTTGTAGAAATTACAAGTTTTGCCTCTGTT
130 AACTTATAGCACTCAAACTTAATGTGCCCTTTATTTTTGTAAAAATTACAAGTTTTGCCTCTGTT
*
7209941 TGAAGATCTCGATCTACCTTTAGATTTATTGCAAGGATTTCATTCTTGTGTCCTCCCACGATTAT
195 TGAAGATCTCGATCTACCCTTAGATTTATTGCAAGGATTTCATTCTTGTGTCCTCCCACGATTAT
* * *
7210006 CACTAATATTTCATTCTTGTCTCCCAAGAACAATGAGACCTTCTCCCTAAGAGTCTAATCCAACC
260 CACTAATATTTCATTCTTGTCTCCCAAGAACAATGAGACCCTCTCCCTAAAAGTCGAATCCAACC
** *
7210071 ACAAGATGATTCATCTTGTCATACGAGGCTAAGGAAGTATAGAGTTCTTCAACTATGAGAGATTC
325 ACAAGATGATTCATCTTGTCATACGAGGCTAACAAAGTATAGACTTCTTCAACTATGAGAGATTC
*
7210136 GCGACTATACAAATTTTATCTCTAAAGGTTGAATA
390 GCGACTATACAAATTGTATCTCTAAAGGTTGAATA
7210171 A
1 A
7210172 GATAGGGCAA
Statistics
Matches: 391, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
423 1 0.00
424 390 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (424 bp):
ACTTTATAGTTGTCAACAGAAGTACCTAGGAGTTCACCATCGCTATAGTCTTCTACTACATCAAC
TTCACCGGATTATTCTGATTGTTTTCCCTTTTGATTCGCAGTCTCCCTTTTGATCTTATTCTATA
ACTTATAGCACTCAAACTTAATGTGCCCTTTATTTTTGTAAAAATTACAAGTTTTGCCTCTGTTT
GAAGATCTCGATCTACCCTTAGATTTATTGCAAGGATTTCATTCTTGTGTCCTCCCACGATTATC
ACTAATATTTCATTCTTGTCTCCCAAGAACAATGAGACCCTCTCCCTAAAAGTCGAATCCAACCA
CAAGATGATTCATCTTGTCATACGAGGCTAACAAAGTATAGACTTCTTCAACTATGAGAGATTCG
CGACTATACAAATTGTATCTCTAAAGGTTGAATA
Found at i:7215021 original size:39 final size:39
Alignment explanation
Indices: 7214967--7215105 Score: 152
Period size: 39 Copynumber: 3.6 Consensus size: 39
7214957 GTTATCTATG
* * *
7214967 GAACTGGCAGTGACACTATAAACACTATAACGCTAGACT
1 GAACTGGCAGTGACACTGTAAACACTACAACGCGAGACT
* * *
7215006 GAACTGGCAATGACACTGTAAACACTGCAACGCGATACT
1 GAACTGGCAGTGACACTGTAAACACTACAACGCGAGACT
* * * * * * *
7215045 GAATTGGCAGTGACACTGTAAACATTGCAATGCAATATT
1 GAACTGGCAGTGACACTGTAAACACTACAACGCGAGACT
*
7215084 GAACTAGCAGTGACACTGTAAA
1 GAACTGGCAGTGACACTGTAAA
7215106 TATTAGAAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (39 bp):
GAACTGGCAGTGACACTGTAAACACTACAACGCGAGACT
Found at i:7229286 original size:26 final size:27
Alignment explanation
Indices: 7229252--7229302 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
7229242 TGTAAAATAG
7229252 AAAAAATATCTTT-AGAG-ATTTTCTAA
1 AAAAAATAT-TTTCAGAGAATTTTCTAA
7229278 AAAAAATATTTTCAGAGAATTTTCT
1 AAAAAATATTTTCAGAGAATTTTCT
7229303 CTCTACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.13
26 13 0.57
27 7 0.30
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (27 bp):
AAAAAATATTTTCAGAGAATTTTCTAA
Found at i:7229484 original size:18 final size:20
Alignment explanation
Indices: 7229457--7229502 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7229447 AGATTAAATT
*
7229457 AATATTAAATC-TTA-TTAA
1 AATATAAAATCTTTATTTAA
*
7229475 AATATAAAATCTTTATTTAC
1 AATATAAAATCTTTATTTAA
7229495 AATATAAA
1 AATATAAA
7229503 TATTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 10 0.42
19 3 0.12
20 11 0.46
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
AATATAAAATCTTTATTTAA
Found at i:7229562 original size:20 final size:18
Alignment explanation
Indices: 7229515--7229613 Score: 62
Period size: 20 Copynumber: 5.3 Consensus size: 18
7229505 TTAGATAAAC
7229515 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
7229532 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
7229552 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
7229571 ATTAAAATAAT-TATTAA-
1 ATTAAATTAATAT-TTAAT
*
7229588 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
7229608 ATTAAA
1 ATTAAA
7229614 ATAGTGTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
17 14 0.23
18 10 0.16
19 16 0.26
20 22 0.35
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:7232301 original size:19 final size:18
Alignment explanation
Indices: 7232259--7232311 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
7232249 AAAAAATCAT
*
7232259 TTAAT-ATACAATTTAATT
1 TTAATAATA-AATTTAATA
7232277 TTAATAATAAATTTCAATA
1 TTAATAATAAATTT-AATA
*
7232296 TTAATAATAATTTTAA
1 TTAATAATAAATTTAA
7232312 GTTCAAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 12 0.39
19 19 0.61
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATAATAAATTTAATA
Found at i:7232412 original size:17 final size:17
Alignment explanation
Indices: 7232329--7232414 Score: 51
Period size: 17 Copynumber: 5.3 Consensus size: 17
7232319 TGATATTCTT
*
7232329 AATATTTTATTG-A-AA
1 AATATTTTATAGTATAA
*
7232344 AATATTTTATA-AATAA
1 AATATTTTATAGTATAA
* * *
7232360 ATATATTTTACAATTTACA
1 A-ATATTTTATAGTATA-A
7232379 AATA--TT-TAGTA-AGA
1 AATATTTTATAGTATA-A
7232393 AATATTTTATAGTATAA
1 AATATTTTATAGTATAA
7232410 AATAT
1 AATAT
7232415 GAACATTTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
14 6 0.11
15 13 0.24
16 7 0.13
17 20 0.37
18 6 0.11
19 2 0.04
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (17 bp):
AATATTTTATAGTATAA
Found at i:7235844 original size:15 final size:16
Alignment explanation
Indices: 7235824--7235857 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7235814 AATATTTTAA
7235824 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
7235839 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
7235855 AAA
1 AAA
7235858 ATTACATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:7240114 original size:99 final size:99
Alignment explanation
Indices: 7239943--7240134 Score: 348
Period size: 99 Copynumber: 1.9 Consensus size: 99
7239933 TCTCTTTCTC
*
7239943 TATATATAGGGAGATTAGACTCCTTATTTTTTAATACATAAATAGGAAAGAGGTTACAAGAATGT
1 TATATATAGGGAGATTAGACTCCTTATTTTTTAATACATAAATAGGAAAGAGGTTACAAGAATAT
* *
7240008 GAAAGGTGAAGAGTTAAGGAATATGAAATAAATA
66 GAAAGGTGAAAAGTTAAGGAAGATGAAATAAATA
*
7240042 TATATATAGGGAGATTAGACTCCTTATTTTTTAATACATAAATAGGAAAGGGGTTACAAGAATAT
1 TATATATAGGGAGATTAGACTCCTTATTTTTTAATACATAAATAGGAAAGAGGTTACAAGAATAT
7240107 GAAAGGTGAAAAGTTAAGGAAGATGAAA
66 GAAAGGTGAAAAGTTAAGGAAGATGAAA
7240135 GGTGAAAAAT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 89 1.00
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (99 bp):
TATATATAGGGAGATTAGACTCCTTATTTTTTAATACATAAATAGGAAAGAGGTTACAAGAATAT
GAAAGGTGAAAAGTTAAGGAAGATGAAATAAATA
Found at i:7240136 original size:24 final size:24
Alignment explanation
Indices: 7240105--7240161 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
7240095 TTACAAGAAT
* *
7240105 ATGAAAGGTGAAAAGTTAAGGAAG
1 ATGAAAGGTGAAAAATTAACGAAG
7240129 ATGAAAGGTGAAAAATTAACGAAG
1 ATGAAAGGTGAAAAATTAACGAAG
*
7240153 ATAAAAGGT
1 ATGAAAGGT
7240162 TGAACATCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.53, C:0.02, G:0.28, T:0.18
Consensus pattern (24 bp):
ATGAAAGGTGAAAAATTAACGAAG
Found at i:7264294 original size:24 final size:24
Alignment explanation
Indices: 7264267--7264317 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7264257 AGTTTGACTC
* *
7264267 AAACAAATAAATAGAATTTAATTG
1 AAACAAATAAACAGAATTTAACTG
* *
7264291 AAACAATTAAACAGAGTTTAACTG
1 AAACAAATAAACAGAATTTAACTG
7264315 AAA
1 AAA
7264318 GATTATCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.08, G:0.10, T:0.25
Consensus pattern (24 bp):
AAACAAATAAACAGAATTTAACTG
Found at i:7266980 original size:43 final size:43
Alignment explanation
Indices: 7266930--7267021 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
7266920 GAAAAAGCGT
7266930 CGCTAAAGAACATGGCCTTTAGCGACGCTTTTCCCACAAACGC
1 CGCTAAAGAACATGGCCTTTAGCGACGCTTTTCCCACAAACGC
** ** * *
7266973 CGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCACAAGCGC
1 CGCTAAAGAACATGGCCTTTAGCGACGCTTTTCCCACAAACGC
7267016 CGCTAA
1 CGCTAA
7267022 CGGCCATGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (43 bp):
CGCTAAAGAACATGGCCTTTAGCGACGCTTTTCCCACAAACGC
Found at i:7267027 original size:43 final size:43
Alignment explanation
Indices: 7266946--7267192 Score: 356
Period size: 43 Copynumber: 5.8 Consensus size: 43
7266936 AGAACATGGC
* *
7266946 CTTTAGCGACGCTTT-TCCCACAAACGCCGCTAAAGGCCATGTT
1 CTTTAGCGGCGCTTTCT-CCACAAGCGCCGCTAAAGGCCATGTT
*
7266989 CTTTAGCGGCGCTTT-TCCCACAAGCGCCGCTAACGGCCATGTT
1 CTTTAGCGGCGCTTTCT-CCACAAGCGCCGCTAAAGGCCATGTT
* *
7267032 CTTTAACGGTGCTTTCTCCACAAGCGCCGCTAAAGG-CATGTT
1 CTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGGCCATGTT
* * *
7267074 TTTTAGCGGCGCTTTCTCCACAAGTGCCGCTAAAGCCCATGTT
1 CTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGGCCATGTT
* *
7267117 CTTTAGCGGCGCTTTCTCCATAAGTGCCGCTAAAGGCCATGTT
1 CTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGGCCATGTT
*
7267160 CTTTAGCGGCGCTTTCTCCAAAAGCGCCGCTAA
1 CTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAA
7267193 TATAATAGAT
Statistics
Matches: 186, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
42 37 0.20
43 148 0.80
44 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGGCCATGTT
Found at i:7267106 original size:85 final size:86
Alignment explanation
Indices: 7266959--7267192 Score: 348
Period size: 85 Copynumber: 2.7 Consensus size: 86
7266949 TAGCGACGCT
*
7266959 TTTC-CCACAAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTT-TCCCACAAGCGCCGCTAA
1 TTTCTCCACAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCT-CCACAAGCGCCGCTAA
* * *
7267022 CGGCCATGTTCTTTAACGGTGC
65 AGCCCATGTTCTTTAACGGCGC
* *
7267044 TTTCTCCACAAGCGCCGCTAAAGG-CATGTTTTTTAGCGGCGCTTTCTCCACAAGTGCCGCTAAA
1 TTTCTCCACAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAA
*
7267108 GCCCATGTTCTTTAGCGGCGC
66 GCCCATGTTCTTTAACGGCGC
* * *
7267129 TTTCTCCATAAGTGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAAAAGCGCCGCTAA
1 TTTCTCCACAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAA
7267193 TATAATAGAT
Statistics
Matches: 134, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
85 79 0.59
86 55 0.41
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.27
Consensus pattern (86 bp):
TTTCTCCACAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAA
GCCCATGTTCTTTAACGGCGC
Found at i:7267119 original size:128 final size:128
Alignment explanation
Indices: 7266947--7267192 Score: 370
Period size: 128 Copynumber: 1.9 Consensus size: 128
7266937 GAACATGGCC
*
7266947 TTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTT-TCCCACA
1 TTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGCCCATGTTCTTTAGCGGCGCTTTCT-CCACA
* * *
7267011 AGCGCCGCTAACGGCCATGTTCTTTAACGGTGCTTTCTCCACAAGCGCCGCTAAAGGCATGTTT
65 AGCGCCGCTAAAGGCCATGTTCTTTAACGGCGCTTTCTCCAAAAGCGCCGCTAAAGGCATGTTT
* ** *
7267075 TTTAGCGGCGC-TTTCTCCACAAGTGCCGCTAAAGCCCATGTTCTTTAGCGGCGCTTTCTCCATA
1 TTTAGCGACGCTTTTC-CCACAAACGCCGCTAAAGCCCATGTTCTTTAGCGGCGCTTTCTCCACA
* *
7267139 AGTGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAAAAGCGCCGCTAA
65 AGCGCCGCTAAAGGCCATGTTCTTTAACGGCGCTTTCTCCAAAAGCGCCGCTAA
7267193 TATAATAGAT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
127 4 0.04
128 101 0.95
129 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.28
Consensus pattern (128 bp):
TTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGCCCATGTTCTTTAGCGGCGCTTTCTCCACAA
GCGCCGCTAAAGGCCATGTTCTTTAACGGCGCTTTCTCCAAAAGCGCCGCTAAAGGCATGTTT
Found at i:7267281 original size:15 final size:15
Alignment explanation
Indices: 7267261--7267289 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7267251 CCTGTAAATT
7267261 CAAATCCAACCAATG
1 CAAATCCAACCAATG
7267276 CAAATCCAACCAAT
1 CAAATCCAACCAAT
7267290 AACTTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.34, G:0.03, T:0.14
Consensus pattern (15 bp):
CAAATCCAACCAATG
Found at i:7267525 original size:21 final size:21
Alignment explanation
Indices: 7267500--7267542 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7267490 CTGCTTCCTT
7267500 CGCTTGCCTCGCTACTGCCTC
1 CGCTTGCCTCGCTACTGCCTC
*
7267521 CGCTTGCCTCGCTGCTGCCTC
1 CGCTTGCCTCGCTACTGCCTC
7267542 C
1 C
7267543 ACTTTAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.49, G:0.21, T:0.28
Consensus pattern (21 bp):
CGCTTGCCTCGCTACTGCCTC
Found at i:7267677 original size:66 final size:65
Alignment explanation
Indices: 7267528--7267684 Score: 251
Period size: 66 Copynumber: 2.4 Consensus size: 65
7267518 CTCCGCTTGC
* *
7267528 CTCGCTGCTGCCTCCACTTTAAGTTGTAGATGGAGTTCTTCATATTTTTTTGAGACTCTGCTTCT
1 CTCGCTGCTGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTGAGACTCTGCTTCT
* * *
7267593 CTCACTGCTGCCTCCTCTTTAAGTTTTAGATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTC
1 CTCGCTGCTGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATA-TTTTTTTGAGACTCTGCTTC
7267658 T
65 T
*
7267659 CTCGCTGCAGCCTCCTCTTTAAGTTG
1 CTCGCTGCTGCCTCCTCTTTAAGTTG
7267685 AGCAATTTGC
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
65 40 0.48
66 43 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.43
Consensus pattern (65 bp):
CTCGCTGCTGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTGAGACTCTGCTTCT
Found at i:7273161 original size:31 final size:34
Alignment explanation
Indices: 7273119--7273193 Score: 120
Period size: 35 Copynumber: 2.3 Consensus size: 34
7273109 TTGATTTAAA
7273119 TTTAAA-A-ATATATATTAGTGACAACATTTTAC
1 TTTAAATATATATATATTAGTGACAACATTTTAC
7273151 TTTAAAATATATATATATTAGTGACAACATTTTAC
1 TTT-AAATATATATATATTAGTGACAACATTTTAC
7273186 -TTAAATAT
1 TTTAAATAT
7273194 TTTGGTTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
32 3 0.08
33 9 0.22
34 3 0.08
35 25 0.62
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (34 bp):
TTTAAATATATATATATTAGTGACAACATTTTAC
Found at i:7273222 original size:8 final size:8
Alignment explanation
Indices: 7273209--7273287 Score: 56
Period size: 8 Copynumber: 9.8 Consensus size: 8
7273199 TTGTTTTCAT
7273209 TAATTAAA
1 TAATTAAA
7273217 TAATTAAA
1 TAATTAAA
*
7273225 T-ATTTAA
1 TAATTAAA
*
7273232 T--TTAGTA
1 TAATTA-AA
7273239 TAATTAAA
1 TAATTAAA
7273247 TAATTAAA
1 TAATTAAA
* *
7273255 TAAATAAT
1 TAATTAAA
*
7273263 TAAAATAAA
1 T-AATTAAA
7273272 TAATTATATA
1 TAATTA-A-A
7273282 TAATTA
1 TAATTA
7273288 TTTACGAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
6 2 0.04
7 8 0.14
8 29 0.51
9 11 0.19
10 7 0.12
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (8 bp):
TAATTAAA
Found at i:7273245 original size:30 final size:30
Alignment explanation
Indices: 7273209--7273340 Score: 98
Period size: 30 Copynumber: 4.5 Consensus size: 30
7273199 TTGTTTTCAT
*
7273209 TAATTAAATAATTAAATATTTAATTTAGTA
1 TAATTAAATAATTAAATAATTAATTTAGTA
*
7273239 TAATTAAATAATTAAATAAATAA-TTA--A
1 TAATTAAATAATTAAATAATTAATTTAGTA
*
7273266 -AA-TAAATAATTATATATAATT-ATTTACGAA
1 TAATTAAATAATTA-A-ATAATTAATTTA-GTA
* ** * * *
7273296 AATATTTTA-AATTAAATATTTAATTAAATA
1 TA-ATTAAATAATTAAATAATTAATTTAGTA
7273326 TAATTAAATAATTAA
1 TAATTAAATAATTAA
7273341 TTGATACTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
25 10 0.13
26 4 0.05
27 9 0.11
29 7 0.09
30 35 0.44
31 6 0.08
32 6 0.08
33 2 0.03
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (30 bp):
TAATTAAATAATTAAATAATTAATTTAGTA
Found at i:7273270 original size:13 final size:13
Alignment explanation
Indices: 7273243--7273277 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
7273233 TTAGTATAAT
7273243 TAAATAATT-AAA
1 TAAATAATTAAAA
7273255 TAAATAATTAAAA
1 TAAATAATTAAAA
7273268 TAAATAATTA
1 TAAATAATTA
7273278 TATATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAATAATTAAAA
Found at i:7273388 original size:18 final size:18
Alignment explanation
Indices: 7273365--7273870 Score: 106
Period size: 18 Copynumber: 27.6 Consensus size: 18
7273355 AATTAAATAC
*
7273365 ATAATTAAACATAATTAA
1 ATAATTAAATATAATTAA
* *
7273383 ATAATTTAATATAATTAT
1 ATAATTAAATATAATTAA
* * *
7273401 TTACTTTAATATAAATTAA
1 ATAATTAAATAT-AATTAA
*
7273420 ATAATTAAATCTTTTAATTAA
1 ATAATTAAA---TATAATTAA
*
7273441 AT-ATTTAAT-TAATTGATA
1 ATAATTAAATATAATT-A-A
* ** * *
7273459 CTGTTTACAAT-TAAATAC
1 ATAATTA-AATATAATTAA
*
7273477 ATAATTAAACATAATTAA
1 ATAATTAAATATAATTAA
* * * *
7273495 TTGATTTAATATAATTAT
1 ATAATTAAATATAATTAA
* * *
7273513 TTACTTTAATATAATTAA
1 ATAATTAAATATAATTAA
*
7273531 ATAATTAAATAT-TTTAA
1 ATAATTAAATATAATTAA
7273548 ATTAATTATTTAAT-TAATTGATA
1 A-TAATTA---AATATAATT-A-A
* ** * *
7273571 CTGTTTATAAT-TAAATAC
1 ATAATTA-AATATAATTAA
*
7273589 ATAATTAAACATAATTAA
1 ATAATTAAATATAATTAA
* *
7273607 ATAATTTAATATAATTAT
1 ATAATTAAATATAATTAA
* * *
7273625 TTAGTTTAATATAATTAA
1 ATAATTAAATATAATTAA
* *
7273643 ATATTTTAAAT-TAATTAT
1 ATA-ATTAAATATAATTAA
* **
7273661 TTAATT-AAT-T-GGT-A
1 ATAATTAAATATAATTAA
* ** * *
7273675 CTGTTTATAATTTAA-TAC
1 ATAATTA-AATATAATTAA
* *
7273693 ATCATTAAACATAATTAA
1 ATAATTAAATATAATTAA
* *
7273711 ATAATTTAATATAATTAT
1 ATAATTAAATATAATTAA
* * *
7273729 TTACTTTAATATAAATTAA
1 ATAATTAAATAT-AATTAA
*
7273748 ATAATTAAATCTTTTAAATTAA
1 ATAATTAAA---TAT-AATTAA
*
7273770 AT-ATTTAAT-TAATTGAA
1 ATAATTAAATATAATT-AA
** * *
7273787 ACTGTTTACAAT-TAAATAC
1 A-TAATTA-AATATAATTAA
*
7273806 ATAATTAAACATAATTAA
1 ATAATTAAATATAATTAA
* * * *
7273824 TTGATTTAATATAATTAT
1 ATAATTAAATATAATTAA
* * *
7273842 TTACTTTAATATAAATTAA
1 ATAATTAAATAT-AATTAA
7273861 ATAATTAAAT
1 ATAATTAAAT
7273871 CTTTTAAATT
Statistics
Matches: 350, Mismatches: 104, Indels: 67
0.67 0.20 0.13
Matches are distributed among these distances:
14 3 0.01
15 1 0.00
16 16 0.05
17 26 0.07
18 192 0.55
19 47 0.13
20 28 0.08
21 18 0.05
22 18 0.05
23 1 0.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (18 bp):
ATAATTAAATATAATTAA
Found at i:7273437 original size:13 final size:12
Alignment explanation
Indices: 7273217--7273452 Score: 89
Period size: 12 Copynumber: 19.6 Consensus size: 12
7273207 ATTAATTAAA
7273217 TAATTAAATATT
1 TAATTAAATATT
* *
7273229 TAATTTAGTA--
1 TAATTAAATATT
*
7273239 TAATTAAATAAT
1 TAATTAAATATT
*
7273251 TAAATAAATAATT
1 TAATTAAAT-ATT
* * *
7273264 AAAATAAATAAT
1 TAATTAAATATT
*
7273276 TATATATAATTATT
1 TA-AT-TAAATATT
***
7273290 TACGAAAATATTT
1 TAATTAAATA-TT
7273303 TAAATTAAATATT
1 T-AATTAAATATT
7273316 TAATTAAATA--
1 TAATTAAATATT
*
7273326 TAATTAAATAAT
1 TAATTAAATATT
* *
7273338 TAATTGATACTGTT
1 TAATT-A-AATATT
**
7273352 TACAATTAAATACA
1 T--AATTAAATATT
*
7273366 TAATTAAACA--
1 TAATTAAATATT
7273376 TAATTAAATAATT
1 TAATTAAAT-ATT
*
7273389 TAATATAATTATT
1 TAAT-TAAATATT
* *
7273402 TACTTTAATA-T
1 TAATTAAATATT
*
7273413 AAATT-AA-A--
1 TAATTAAATATT
*
7273421 TAATTAAATCTTT
1 TAATTAAAT-ATT
7273434 TAATTAAATATT
1 TAATTAAATATT
7273446 TAATTAA
1 TAATTAA
7273453 TTGATACTGT
Statistics
Matches: 165, Mismatches: 37, Indels: 44
0.67 0.15 0.18
Matches are distributed among these distances:
8 4 0.02
9 3 0.02
10 28 0.17
11 5 0.03
12 58 0.35
13 37 0.22
14 25 0.15
15 1 0.01
16 4 0.02
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (12 bp):
TAATTAAATATT
Found at i:7273450 original size:112 final size:113
Alignment explanation
Indices: 7273334--7274090 Score: 1118
Period size: 113 Copynumber: 6.8 Consensus size: 113
7273324 TATAATTAAA
*
7273334 TAATTAATTGATACTGTTTACAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
7273399 ATTTACTTTAATATAAATTAAATAATTAAATCTTTT-AATTAAATATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
* * *
7273446 TAATTAATTGATACTGTTTACAATTAAATACATAATTAAACATAATTAATTGATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
* *
7273511 ATTTACTTTAATAT-AATTAAATAATTAAATATTTTAAATTAATTATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
7273558 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
* *
7273623 ATTTAGTTTAATAT-AATT--A-AA-T--A--TTTTAAATTAATTATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
* * *
7273662 TAATTAATTGGTACTGTTTATAATTTAATACATCATTAAACATAATTAAATAATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
7273727 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
* * * *
7273775 TAATTAATTGAAACTGTTTACAATTAAATACATAATTAAACATAATTAATTGATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
7273840 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
* * *
7273888 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAATTGATTTAATATAACT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
* *
7273953 ATTTAGTTT-A-AT--ATT---TAATTAAATCTTTCAAATTAAATATT
66 ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
* * * * * *
7273994 TAATTAACTAATAATGTTTATAATTAAATATATAATTAAACATAGTTAAATAATTAAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
*
7274059 ATTTACTTTAATATTTTAAATTAAATATTTAA
66 ATTTACTTTAATA---TAAATTAAATAATTAA
7274091 TTAAATATAA
Statistics
Matches: 589, Mismatches: 36, Indels: 36
0.89 0.05 0.05
Matches are distributed among these distances:
104 91 0.15
105 4 0.01
106 90 0.15
107 2 0.00
108 4 0.01
109 6 0.01
110 1 0.00
111 24 0.04
112 167 0.28
113 194 0.33
116 6 0.01
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.46
Consensus pattern (113 bp):
TAATTAATTGATACTGTTTATAATTAAATACATAATTAAACATAATTAAATAATTTAATATAATT
ATTTACTTTAATATAAATTAAATAATTAAATCTTTTAAATTAAATATT
Found at i:7273801 original size:32 final size:30
Alignment explanation
Indices: 7273744--7273813 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 30
7273734 TTAATATAAA
* *
7273744 TTAAATAATTAAATCTTTTAAATTAAATAT
1 TTAATTAATTAAATCTTTTAAATTAAATAC
7273774 TTAATTAATTGAAA-CTGTTTACAATTAAATAC
1 TTAATTAATT-AAATCT-TTTA-AATTAAATAC
*
7273806 ATAATTAA
1 TTAATTAA
7273814 ACATAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.32
31 7 0.21
32 16 0.47
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (30 bp):
TTAATTAATTAAATCTTTTAAATTAAATAC
Found at i:7273891 original size:26 final size:26
Alignment explanation
Indices: 7273862--7274000 Score: 85
Period size: 26 Copynumber: 5.3 Consensus size: 26
7273852 ATAAATTAAA
7273862 TAATTAAATCTTTTAAATTAAATATT
1 TAATTAAATCTTTTAAATTAAATATT
**
7273888 TAATTAATTGATACTGTTTATAATTAAATACA
1 TAATTAA---AT-CT-TTTA-AATTAAATATT
* *
7273920 TAATTAAA-C--AT-AATTAATTGATT
1 TAATTAAATCTTTTAAATTAAAT-ATT
* *
7273943 TAA-TATAA-CTATTT-AGTTTAATATT
1 TAATTA-AATCT-TTTAAATTAAATATT
*
7273968 TAATTAAATCTTTCAAATTAAATATT
1 TAATTAAATCTTTTAAATTAAATATT
7273994 TAATTAA
1 TAATTAA
7274001 CTAATAATGT
Statistics
Matches: 86, Mismatches: 13, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
22 9 0.10
23 7 0.08
24 1 0.01
25 10 0.12
26 33 0.38
27 1 0.01
29 3 0.03
30 2 0.02
31 4 0.05
32 16 0.19
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (26 bp):
TAATTAAATCTTTTAAATTAAATATT
Found at i:7274031 original size:44 final size:43
Alignment explanation
Indices: 7273968--7274232 Score: 203
Period size: 44 Copynumber: 5.7 Consensus size: 43
7273958 GTTTAATATT
* *
7273968 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTA
1 TAATTAAATATTT-AAATTAAATATTTAATTAAAT-ATAAT-TTTA
*
7274014 TAATTAAATATAT-AATTAAACATAGTTAAATAATTAAATATAATTATT-
1 TAATTAAATATTTAAATT-AA-ATA-TT---TAATTAAATATAATT-TTA
* * **
7274062 TACTTTAATATTTTAAATTAAATATTTAATTAAATATAATTAAA
1 TAATTAAATA-TTTAAATTAAATATTTAATTAAATATAATTTTA
* *
7274106 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTA
1 TAATTAAATATTT-AAATTAAATATTTAATTAAAT-ATAAT-TTTA
**
7274152 TAATTAAATATTT-AATTAAACATAATTAAATAATTAAATATAATTAAA
1 TAATTAAATATTTAAATT-AA-AT-ATT---TAATTAAATATAATTTTA
* *
7274200 TAATTAAATCTTTCAAATTAAATATTAAATTAA
1 TAATTAAATATTT-AAATTAAATATTTAATTAA
7274233 CTAATACTGA
Statistics
Matches: 178, Mismatches: 20, Indels: 44
0.74 0.08 0.18
Matches are distributed among these distances:
43 3 0.02
44 56 0.31
45 9 0.05
46 30 0.17
47 10 0.06
48 28 0.16
49 18 0.10
50 24 0.13
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (43 bp):
TAATTAAATATTTAAATTAAATATTTAATTAAATATAATTTTA
Found at i:7274050 original size:62 final size:62
Alignment explanation
Indices: 7273983--7274232 Score: 199
Period size: 62 Copynumber: 3.8 Consensus size: 62
7273973 AAATCTTTCA
* *
7273983 AATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATATAATTAAACATAGTTAAAT
1 AATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATTTAATTAAACATAATTAAAT
* *
7274045 AATTAAATATAATT-ATTTACTTTAAT-AT-TTTA-AATTAAATATTTAATTAAATATAATTAAA
1 AATTAAATAT--TTAATTAAC--TAATAATGTTTATAATTAAATATTTAATTAAACATAATT--A
7274106 TAATT
60 -AA-T
7274111 AAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATTTAATTAAACATA
1 -AA---TT--AA--A--TATTTAATTAACTAATAATGTTTATAATTAAATATTTAATTAAACATA
7274176 ATTAAAT
56 ATTAAAT
* * *
7274183 AATTAAATA--TAATTAAATAATTAAATCTTTCA-AATTAAATATTAAATTAA
1 AATTAAATATTTAATTAACTAA-T-AATGTTT-ATAATTAAATATTTAATTAA
7274233 CTAATACTGA
Statistics
Matches: 154, Mismatches: 9, Indels: 50
0.72 0.04 0.23
Matches are distributed among these distances:
60 10 0.06
61 1 0.01
62 58 0.38
63 10 0.06
64 6 0.04
65 6 0.04
66 3 0.02
67 2 0.01
68 2 0.01
70 2 0.01
71 2 0.01
72 3 0.02
73 6 0.04
74 6 0.04
75 9 0.06
76 28 0.18
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (62 bp):
AATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATTTAATTAAACATAATTAAAT
Found at i:7274087 original size:14 final size:14
Alignment explanation
Indices: 7274068--7274132 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
7274058 TATTTACTTT
7274068 AATATTTTAAATTA
1 AATATTTTAAATTA
7274082 AATA-TTT-AATTA
1 AATATTTTAAATTA
*
7274094 AATATAATTAAATAATTA
1 AATAT--TT-TA-AATTA
* *
7274112 AATCTTTCAAATTA
1 AATATTTTAAATTA
7274126 AATATTT
1 AATATTT
7274133 AATTAACTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
12 9 0.22
13 3 0.07
14 15 0.37
15 3 0.07
16 2 0.05
18 9 0.22
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (14 bp):
AATATTTTAAATTA
Found at i:7274087 original size:26 final size:27
Alignment explanation
Indices: 7274039--7274232 Score: 75
Period size: 26 Copynumber: 7.1 Consensus size: 27
7274029 TTAAACATAG
* * *
7274039 TTAAATA-ATTAAATATAATTATTTAC
1 TTAAATATTTTAAATATAAATATTTAA
*
7274065 TTTAATATTTTAAAT-TAAATATTTAA
1 TTAAATATTTTAAATATAAATATTTAA
* *
7274091 TTAAATATAATTAAATAATTAAATCTTTCAAA
1 TTAAATAT-TTTAAAT-A-TAAATATTT--AA
* *
7274123 TTAAATA-TTTAATTAACTAATAATGTTTATAA
1 TTAAATATTTTAAAT-A-T-A-AAT-ATT-TAA
*
7274155 TTAAATA-TTT-AAT-TAAACA--TAA
1 TTAAATATTTTAAATATAAATATTTAA
* * **
7274177 TTAAATA-ATTAAATATAATTAAATAA
1 TTAAATATTTTAAATATAAATATTTAA
* * *
7274203 TTAAATCTTTCAAAT-TAAATATTAAA
1 TTAAATATTTTAAATATAAATATTTAA
7274229 TTAA
1 TTAA
7274233 CTAATACTGA
Statistics
Matches: 128, Mismatches: 24, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
22 12 0.09
23 3 0.02
24 4 0.03
26 44 0.34
27 18 0.14
28 1 0.01
30 16 0.12
31 3 0.02
32 24 0.19
33 2 0.02
34 1 0.01
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (27 bp):
TTAAATATTTTAAATATAAATATTTAA
Found at i:7274102 original size:22 final size:22
Alignment explanation
Indices: 7274012--7274138 Score: 70
Period size: 22 Copynumber: 6.0 Consensus size: 22
7274002 TAATAATGTT
*
7274012 TATAATTAAATATATAATTAAA
1 TATAATTAAATATTTAATTAAA
* *
7274034 CATAGTT-AA-A--TAATTAAA
1 TATAATTAAATATTTAATTAAA
** *
7274052 TATAATTATTTACTTTAA-T-AT
1 TATAATTAAATA-TTTAATTAAA
*
7274073 TTTAAATTAAATATTTAATTAAA
1 TAT-AATTAAATATTTAATTAAA
* * ***
7274096 TATAATTAAATAATTAAATCTT
1 TATAATTAAATATTTAATTAAA
7274118 TCA-AATTAAATATTTAATTAA
1 T-ATAATTAAATATTTAATTAA
7274139 CTAATAATGT
Statistics
Matches: 75, Mismatches: 21, Indels: 18
0.66 0.18 0.16
Matches are distributed among these distances:
18 13 0.17
20 2 0.03
21 10 0.13
22 43 0.57
23 7 0.09
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (22 bp):
TATAATTAAATATTTAATTAAA
Found at i:7274111 original size:18 final size:18
Alignment explanation
Indices: 7274088--7274208 Score: 81
Period size: 18 Copynumber: 6.5 Consensus size: 18
7274078 ATTAAATATT
7274088 TAATTAAATATAATTAAA
1 TAATTAAATATAATTAAA
* *
7274106 TAATTAAATCT--TT-CA
1 TAATTAAATATAATTAAA
*
7274121 -AATTAAATATTTAATTAAC
1 TAATTAAATA--TAATTAAA
*
7274140 TAA-TAATGTTTATAATTAAATA
1 TAATTAA---ATATAATT-AA-A
*
7274162 TTTAATTAAACATAATTAAA
1 -T-AATTAAATATAATTAAA
7274182 TAATTAAATATAATTAAA
1 TAATTAAATATAATTAAA
7274200 TAATTAAAT
1 TAATTAAAT
7274209 CTTTCAAATT
Statistics
Matches: 79, Mismatches: 10, Indels: 28
0.68 0.09 0.24
Matches are distributed among these distances:
14 8 0.10
15 1 0.01
16 3 0.04
18 37 0.47
19 4 0.05
20 8 0.10
21 4 0.05
22 8 0.10
23 1 0.01
24 2 0.03
25 3 0.04
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
TAATTAAATATAATTAAA
Found at i:7274125 original size:94 final size:91
Alignment explanation
Indices: 7273964--7274238 Score: 253
Period size: 94 Copynumber: 3.0 Consensus size: 91
7273954 TTTAGTTTAA
* * * ** * *
7273964 TATTTAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATAT--
1 TATTTAATTAAATATTTTAAATTAAATATTTAATTAAAT-ATAAT-TAAATAATTAAATCTTTCA
7274027 AATTAAACATAGTTAAATAATTAAAT-ATAAT-
64 AATTAAA-ATA-TT---TAATTAAATAATAATG
* *
7274058 TATTTACTTTAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAATCTTTCAAA
1 TATTTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAATCTTTCAAA
*
7274123 TT-AAATATTTAATTAACTAATAATG
66 TTAAAATATTTAATTAAATAATAATG
7274148 T-TTATAATTAAATA-TTT-AATTAAACATAATTAAATAATTAAATATAATTAAATAATTAAATC
1 TATT-TAATTAAATATTTTAAATT-AA-AT-ATT---TAATTAAATATAATTAAATAATTAAATC
* *
7274210 TTTCAAATT-AAATATTAAATTAACTAATA
59 TTTCAAATTAAAATATTTAATTAAATAATA
7274239 CTGATTGTTT
Statistics
Matches: 157, Mismatches: 13, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
88 12 0.08
89 12 0.08
90 11 0.07
91 5 0.03
92 16 0.10
93 7 0.04
94 94 0.60
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (91 bp):
TATTTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAATCTTTCAAA
TTAAAATATTTAATTAAATAATAATG
Found at i:7274184 original size:8 final size:8
Alignment explanation
Indices: 7274151--7274208 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
7274141 AATAATGTTT
7274151 ATAATTAA
1 ATAATTAA
*
7274159 ATATTTAA
1 ATAATTAA
* *
7274167 TTAA--AC
1 ATAATTAA
7274173 ATAATTAA
1 ATAATTAA
7274181 ATAATTAAA
1 ATAATT-AA
7274190 TATAATTAA
1 -ATAATTAA
7274199 ATAATTAA
1 ATAATTAA
7274207 AT
1 AT
7274209 CTTTCAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
6 4 0.10
8 26 0.65
9 4 0.10
10 6 0.15
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATTAA
Found at i:7274252 original size:138 final size:138
Alignment explanation
Indices: 7273968--7274232 Score: 440
Period size: 138 Copynumber: 1.9 Consensus size: 138
7273958 GTTTAATATT
7273968 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATATAATTAA
1 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATATAATTAA
* ** * * * *
7274033 ACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAAATTAAATATTTAATTAAATA
66 ACATAATTAAATAATTAAATATAATTAAATAATTAAATATTTCAAATTAAATATTAAATTAAATA
*
7274098 TAATTAAA
131 TAACTAAA
*
7274106 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATTTAATTAA
1 TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATATAATTAA
*
7274171 ACATAATTAAATAATTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAA
66 ACATAATTAAATAATTAAATATAATTAAATAATTAAATATTTCAAATTAAATATTAAATTAA
7274233 CTAATACTGA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 118 1.00
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (138 bp):
TAATTAAATCTTTCAAATTAAATATTTAATTAACTAATAATGTTTATAATTAAATATATAATTAA
ACATAATTAAATAATTAAATATAATTAAATAATTAAATATTTCAAATTAAATATTAAATTAAATA
TAACTAAA
Found at i:7274517 original size:18 final size:18
Alignment explanation
Indices: 7274496--7274543 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
7274486 TAAATTAAAC
7274496 ATAATTAAATAATTTAAT
1 ATAATTAAATAATTTAAT
** *
7274514 ATAATTATTTACTTTAAT
1 ATAATTAAATAATTTAAT
7274532 ATAATTAAATAA
1 ATAATTAAATAA
7274544 CTAAATCTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
ATAATTAAATAATTTAAT
Found at i:7274612 original size:76 final size:76
Alignment explanation
Indices: 7274532--7275045 Score: 433
Period size: 76 Copynumber: 7.2 Consensus size: 76
7274522 TTACTTTAAT
*
7274532 ATAATTAAATAACTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
7274597 TTTAATTAAAC
66 TTTAATTAAAC
* * *
7274608 ATAATTAAATAATTAAATCTTTTAAATTAAATATTAAATTAAGTAATACTGTTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
7274673 TTTAATTAAAC
66 TTTAATTAAAC
* *
7274684 ATAATTAAATAATTAAATCTTTTAAATTAAATATTAAA-TAACTAATACTGTTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
*
7274748 TATAATTAAAC
66 TTTAATTAAAC
* * ** ** *
7274759 ATAGTTAAATAATTAAA--TAT--AATT--AT-TTACTTTAA-T-ATTTTAATTT-T-ATT-CAT
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACT-ATTTATAATTAAAT
*
7274812 -TTAAATAT----
65 ATTTAAT-TAAAC
* *
7274820 --AATTAAATAATTAAATCTTTCAAATTAAATATTTAATTAACTGATACTATTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
*
7274883 TATAATTAAAC
66 TTTAATTAAAC
* * ** ** *
7274894 ATAGTTAAATAATTAAA--TAT--AATT--AT-TTACTTTAA-T-ATTTTAATTT-T-ATT-CAT
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACT-ATTTATAATTAAAT
*
7274947 -TTAAATAT----
65 ATTTAAT-TAAAC
* * * * *
7274955 --AATTAAATAATTAAAT-TTTTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAATA
1 ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
7275017 TTTAATTAAAC
66 TTTAATTAAAC
7275028 ATAATTAAATAATTAAAT
1 ATAATTAAATAATTAAAT
7275046 ATAATTAAAT
Statistics
Matches: 350, Mismatches: 46, Indels: 85
0.73 0.10 0.18
Matches are distributed among these distances:
59 28 0.08
60 2 0.01
61 2 0.01
62 4 0.01
63 4 0.01
64 10 0.03
65 14 0.04
66 16 0.05
67 17 0.05
68 19 0.05
69 17 0.05
70 10 0.03
71 8 0.02
72 4 0.01
73 2 0.01
74 2 0.01
75 67 0.19
76 124 0.35
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.45
Consensus pattern (76 bp):
ATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAAATA
TTTAATTAAAC
Found at i:7274898 original size:135 final size:135
Alignment explanation
Indices: 7274678--7275052 Score: 664
Period size: 135 Copynumber: 2.8 Consensus size: 135
7274668 AAATATTTAA
* * *
7274678 TTAAACATAATTAAATAATTAAATCTTTTAAATTAAATA-TTAAATAACTAATACTGTTTATAAT
1 TTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAATTAACTGATACTGTTTATAAT
7274742 TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAATTTTA
66 TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAATTTTA
7274807 TTCAT
131 TTCAT
* *
7274812 TTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTTAATTAACTGATACTATTTATAAT
1 TTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAATTAACTGATACTGTTTATAAT
7274877 TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAATTTTA
66 TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAATTTTA
7274942 TTCAT
131 TTCAT
*
7274947 TTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATTTAATTAATTGATACTGTTTATAAT
1 TTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAATTAACTGATACTGTTTATAAT
* *
7275011 TAAATATTTAATTAAACATAATTAAATAATTAAATATAATTA
66 TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTA
7275053 AATAATTAAA
Statistics
Matches: 230, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
134 114 0.50
135 116 0.50
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (135 bp):
TTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAATTAACTGATACTGTTTATAAT
TAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATATTTTAATTTTA
TTCAT
Found at i:7275009 original size:94 final size:94
Alignment explanation
Indices: 7274947--7275146 Score: 348
Period size: 94 Copynumber: 2.1 Consensus size: 94
7274937 TTTTATTCAT
* * * *
7274947 TTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATTTAATTAATTGATACTGTTTATAAT
1 TTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAAT
7275011 TAAATATTTAATTAAACATAATTAAATAA
66 TAAATATTTAATTAAACATAATTAAATAA
7275040 TTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAAT
1 TTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAAT
*
7275105 TAAATATATAATTAAACATAATTAAATAA
66 TAAATATTTAATTAAACATAATTAAATAA
7275134 TTAAATATAATTA
1 TTAAATATAATTA
7275147 TTTACTTTAA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 24 0.24
94 77 0.76
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (94 bp):
TTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAAT
TAAATATTTAATTAAACATAATTAAATAA
Found at i:7275034 original size:210 final size:209
Alignment explanation
Indices: 7274529--7275179 Score: 647
Period size: 210 Copynumber: 3.0 Consensus size: 209
7274519 TATTTACTTT
* * * *
7274529 AATATAATTAAATAACTAAATCTTTCAAATTAAATATTAAATTAACTAATACTATTTATAATTAA
1 AATATAATTAAATAATTAAAT-TTTTAAATTAAATATTTAATTAA-TTATACTATTTATAATTAA
* *
7274594 ATATTTAATTAAACATAATTAAATAATTAAATCTTTTAAATTAAATATTAAATTAAGTAATACTG
64 ATATTTAATTAAACATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTG
* * ** *
7274659 TTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATCTTTTAAATTAAATA-TTAAAT
129 TTTATAATTAAATATATAATTAAACATAATTAAATAATTAAA---TAT-AATTATTTACTTTAAT
** * *
7274723 AACTAATACTGTTTA-TAATTAA
190 -A-TTTTAAT-TTTATTCATTAA
* ** * *
7274745 ATATATAATTAAACATAGTTAAATAATTAAATATAATTATTT-ACT--TTA-A-TATTT-TAATT
1 A-ATATAATT-AA-ATAATTAAATTTTTAAAT-TAAATATTTAATTAATTATACTATTTATAATT
* * * * * *
7274804 --TTATTCATTTAAATATAATTAAATAATTAAATCTTTCAAATTAAATATTTAATTAACTGATAC
62 AAATATTTAATTAAACATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATAC
* *
7274867 TATTTATAATTAAATATATAATTAAACATAGTTAAATAATTAAATATAATTATTTACTTTAATAT
127 TGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATTATTTACTTTAATAT
*
7274932 TTTAATTTTATTCATTTA
192 TTTAATTTTATTCATTAA
*
7274950 AATATAATTAAATAATTAAATTTTTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAA
1 AATATAATTAAATAATTAAATTTTTAAATTAAATATTTAATTAATT-ATACTATTTATAATTAAA
* *
7275015 TATTTAATTAAACATAATTAAATAATTAAATATAATTAAATAATTAAATCTTTCAAATTAAATAT
65 TATTTAATTAAACATAATTAAATAATT-AA-AT--CT---T--TCAAA---TT---A--A-ATAT
7275080 TAAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAAT
112 TAAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAAT
*
7275145 TATTTACTTTAATATTTTAATTTTATTCATCAA
177 TATTTACTTTAATATTTTAATTTTATTCATTAA
7275178 AA
1 AA
7275180 GGAAAGCCAT
Statistics
Matches: 355, Mismatches: 47, Indels: 54
0.78 0.10 0.12
Matches are distributed among these distances:
201 8 0.02
202 17 0.05
203 2 0.01
204 14 0.04
205 11 0.03
206 9 0.03
207 11 0.03
208 5 0.01
210 120 0.34
211 2 0.01
212 7 0.02
213 5 0.01
214 2 0.01
215 2 0.01
216 1 0.00
217 9 0.03
218 9 0.03
219 19 0.05
222 2 0.01
225 1 0.00
227 1 0.00
228 98 0.28
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (209 bp):
AATATAATTAAATAATTAAATTTTTAAATTAAATATTTAATTAATTATACTATTTATAATTAAAT
ATTTAATTAAACATAATTAAATAATTAAATCTTTCAAATTAAATATTAAATTAACTAATACTGTT
TATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATTATTTACTTTAATATTTTA
ATTTTATTCATTAA
Found at i:7275039 original size:8 final size:8
Alignment explanation
Indices: 7275006--7275063 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
7274996 GATACTGTTT
7275006 ATAATTAA
1 ATAATTAA
*
7275014 ATATTTAA
1 ATAATTAA
* *
7275022 TTAA--AC
1 ATAATTAA
7275028 ATAATTAA
1 ATAATTAA
7275036 ATAATTAAA
1 ATAATT-AA
7275045 TATAATTAA
1 -ATAATTAA
7275054 ATAATTAA
1 ATAATTAA
7275062 AT
1 AT
7275064 CTTTCAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
6 4 0.10
8 26 0.65
9 4 0.10
10 6 0.15
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATTAA
Found at i:7275042 original size:18 final size:18
Alignment explanation
Indices: 7275019--7275146 Score: 82
Period size: 18 Copynumber: 6.9 Consensus size: 18
7275009 ATTAAATATT
7275019 TAATTAAACATAATTAAA
1 TAATTAAACATAATTAAA
*
7275037 TAATTAAATATAATTAAA
1 TAATTAAACATAATTAAA
*
7275055 TAATTAAATCTTTCAAATTAAA
1 TAATTAAA-C-AT--AATTAAA
* *
7275077 T-ATTAAA-TTAACTAATA
1 TAATTAAACATAATTAA-A
** * * *
7275094 CTGTTTATAA-TTAAATATA
1 -TAATTA-AACATAATTAAA
7275113 TAATTAAACATAATTAAA
1 TAATTAAACATAATTAAA
*
7275131 TAATTAAATATAATTA
1 TAATTAAACATAATTA
7275147 TTTACTTTAA
Statistics
Matches: 88, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
16 5 0.06
17 3 0.03
18 53 0.60
19 4 0.05
20 9 0.10
21 6 0.07
22 8 0.09
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.40
Consensus pattern (18 bp):
TAATTAAACATAATTAAA
Found at i:7275106 original size:32 final size:31
Alignment explanation
Indices: 7275001--7275141 Score: 91
Period size: 32 Copynumber: 4.5 Consensus size: 31
7274991 TAATTGATAC
*
7275001 TGTTTATAATTAAATATTTAATTAA-ACATAA
1 TGTTTATAATTAAATATTAAATTAATA-ATAA
**
7275032 T-TAAATAATTAAATA-T-AATTAAATAATTAAA
1 TGTTTATAATTAAATATTAAATT-AATAA-T-AA
* *
7275063 TCTTTCA-AATTAAATATTAAATTAACTAATAC
1 TGTTT-ATAATTAAATATTAAATTAA-TAATAA
7275095 TGTTTATAATTAAATA-TATAATTAA-ACATAA
1 TGTTTATAATTAAATATTA-AATTAATA-ATAA
**
7275126 T-TAAATAATTAAATAT
1 TGTTTATAATTAAATAT
7275142 AATTATTTAC
Statistics
Matches: 88, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
28 4 0.05
29 4 0.05
30 27 0.31
31 11 0.12
32 30 0.34
33 5 0.06
34 7 0.08
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (31 bp):
TGTTTATAATTAAATATTAAATTAATAATAA
Found at i:7277549 original size:15 final size:17
Alignment explanation
Indices: 7277517--7277549 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7277507 TTATTTGTTT
7277517 TTTTCTTTTAAATCTAA
1 TTTTCTTTTAAATCTAA
7277534 TTTT-TTTTAAAT-TAA
1 TTTTCTTTTAAATCTAA
7277549 T
1 T
7277550 CAAACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTCTTTTAAATCTAA
Found at i:7278981 original size:41 final size:41
Alignment explanation
Indices: 7278666--7278971 Score: 364
Period size: 41 Copynumber: 7.4 Consensus size: 41
7278656 ACTAATTCAC
* * *
7278666 ACCTTTAGTGGCGCTTTTCTAATAAGCGCCGCTAAAGACCTG
1 ACCTTTAGCGGCGCTTTTCT-ATAAGCGCCGCTAATGACCCG
* * * * * **
7278708 ACCTTTAGCGGTGCTTATTATAAAAGCGCAGTTAATGACAAG
1 ACCTTTAGCGGCGCTT-TTCTATAAGCGCCGCTAATGACCCG
* * **
7278750 ACCTTTAGCGGCG-TATTTTTATAAGCACCGCTAATGACAAG
1 ACCTTTAGCGGCGCT-TTTCTATAAGCGCCGCTAATGACCCG
* **
7278791 ACCTTTAGCGGCG-TATTTTTATAAGCGCCGCTAATGACAAG
1 ACCTTTAGCGGCGCT-TTTCTATAAGCGCCGCTAATGACCCG
*
7278832 ACCTTTAGCGGCGCTTTTCTATAAGCACCGCTAATGACCCG
1 ACCTTTAGCGGCGCTTTTCTATAAGCGCCGCTAATGACCCG
* * *
7278873 ATCTTTAGTGGCGTTTTTCTATAAGCGCCGCTAATGACCCG
1 ACCTTTAGCGGCGCTTTTCTATAAGCGCCGCTAATGACCCG
*
7278914 ACCTTTAGCGGCGCTTTTCTATAAGCGCTGCTAATGACCCG
1 ACCTTTAGCGGCGCTTTTCTATAAGCGCCGCTAATGACCCG
7278955 ACCTTTAGCGGCGCTTT
1 ACCTTTAGCGGCGCTTT
7278972 GTGGAAAGCG
Statistics
Matches: 233, Mismatches: 28, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
41 187 0.80
42 43 0.18
43 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (41 bp):
ACCTTTAGCGGCGCTTTTCTATAAGCGCCGCTAATGACCCG
Found at i:7278981 original size:82 final size:81
Alignment explanation
Indices: 7278631--7278990 Score: 350
Period size: 82 Copynumber: 4.4 Consensus size: 81
7278621 GTTAAATAAA
* * * * * *
7278631 TTAGCGGCGCTTATGGGAAAGCGCCACTAAT-TC-ACACCTTTAGTGGCGCTTTTCTAATAAGCG
1 TTAGCGGCGCTT-TTGGAAAGCGCCGCTAATGACAAGACCTTTAGCGGCGCTTTTCT-ATAAGCA
* *
7278694 CCGCTAAAGACCTGACCT
64 CCGCTAATGACCCGACCT
* ** * * *
7278712 TTAGCGGTGCTTATTATAAAAGCGCAGTTAATGACAAGACCTTTAGCGGCG-TATTTTTATAAGC
1 TTAGCGGCGCTT-TT-GGAAAGCGCCGCTAATGACAAGACCTTTAGCGGCGCT-TTTCTATAAGC
**
7278776 ACCGCTAATGACAAGACCT
63 ACCGCTAATGACCCGACCT
**
7278795 TTAGCGGCG-TATTTTTATAAGCGCCGCTAATGACAAGACCTTTAGCGGCGCTTTTCTATAAGCA
1 TTAGCGGCGCT-TTTGGA-AAGCGCCGCTAATGACAAGACCTTTAGCGGCGCTTTTCTATAAGCA
*
7278859 CCGCTAATGACCCGATCT
64 CCGCTAATGACCCGACCT
* * ** ** *
7278877 TTAGTGGCGTTTTTCTATAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTTTCTATAAGCGC
1 TTAGCGGCGCTTTTGGA-AAGCGCCGCTAATGACAAGACCTTTAGCGGCGCTTTTCTATAAGCAC
*
7278942 TGCTAATGACCCGACCT
65 CGCTAATGACCCGACCT
* *
7278959 TTAGCGGCGCTTTGTGGAAAGCGACGCGAATG
1 TTAGCGGCGCTTT-TGGAAAGCGCCGCTAATG
7278991 CTTTACCTTT
Statistics
Matches: 234, Mismatches: 36, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
81 15 0.06
82 166 0.71
83 36 0.15
84 17 0.07
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (81 bp):
TTAGCGGCGCTTTTGGAAAGCGCCGCTAATGACAAGACCTTTAGCGGCGCTTTTCTATAAGCACC
GCTAATGACCCGACCT
Found at i:7280109 original size:16 final size:16
Alignment explanation
Indices: 7280088--7280118 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7280078 CCATATGCTT
*
7280088 ATTTATTTGATTTTTA
1 ATTTATTTAATTTTTA
7280104 ATTTATTTAATTTTT
1 ATTTATTTAATTTTT
7280119 TCTGTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTTATTTAATTTTTA
Found at i:7298949 original size:41 final size:41
Alignment explanation
Indices: 7298863--7298940 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
7298853 CATACAGGCT
*
7298863 GGCACACGGGCGTGGGTCAAGGTGTGTGTATACTGTTCTAA
1 GGCACACGGGCGTGGGTCAAGGTGTGTGTATACTATTCTAA
* * *
7298904 GGCACACGGGCGTGTGTTAGGGTGTGTGTATACTATT
1 GGCACACGGGCGTGGGTCAAGGTGTGTGTATACTATT
7298941 TTGGGGCACG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.18, C:0.15, G:0.37, T:0.29
Consensus pattern (41 bp):
GGCACACGGGCGTGGGTCAAGGTGTGTGTATACTATTCTAA
Found at i:7298983 original size:94 final size:96
Alignment explanation
Indices: 7298808--7298993 Score: 243
Period size: 94 Copynumber: 2.0 Consensus size: 96
7298798 CACACGGGTT
* *
7298808 GGCACACAGGCGTGTGTCAGGGTGTGTGTGTATACTGTTTGGTGGCATACAGGCTGGCACACGGG
1 GGCACACAGGCGTGTGTCAGGGTGTGTGTGTATACTGTTTGGTGGCACACAGGCTGACACACGGG
7298873 CGTGGGTCAAGGTGTGTGTATACTGTTCTAA
66 CGTGGGTCAAGGTGTGTGTATACTGTTCTAA
* * * * * * *
7298904 GGCACACGGGCGTGTGTTA-GG-GTGTGTGTATACTATTTTGG-GGCACGCGGGTTGACACATGG
1 GGCACACAGGCGTGTGTCAGGGTGTGTGTGTATACT-GTTTGGTGGCACACAGGCTGACACACGG
* *
7298966 GCGTGTGTCAGGGTGTGTGTATACTGTT
65 GCGTGGGTCAAGGTGTGTGTATACTGTT
7298994 TTAGGGAACA
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
94 54 0.69
95 7 0.09
96 17 0.22
ACGTcount: A:0.16, C:0.16, G:0.39, T:0.30
Consensus pattern (96 bp):
GGCACACAGGCGTGTGTCAGGGTGTGTGTGTATACTGTTTGGTGGCACACAGGCTGACACACGGG
CGTGGGTCAAGGTGTGTGTATACTGTTCTAA
Found at i:7299693 original size:29 final size:29
Alignment explanation
Indices: 7299661--7299739 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
7299651 GTCTGTATAT
*
7299661 GTAACTGTATCTGT-ATCATGTCTACATCC
1 GTAACTGTATCTGTGA-CATGACTACATCC
* * * *
7299690 GTAACTATATTTGTGACATGACTATATCT
1 GTAACTGTATCTGTGACATGACTACATCC
* *
7299719 GTGACTGTATCTTTGACATGA
1 GTAACTGTATCTGTGACATGA
7299740 TTGTATCTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 39 0.98
30 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (29 bp):
GTAACTGTATCTGTGACATGACTACATCC
Found at i:7302616 original size:17 final size:17
Alignment explanation
Indices: 7302571--7302623 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7302561 ATATGCTTAG
*
7302571 TTATTTGTGTTTTAATT
1 TTATTTGTTTTTTAATT
* *
7302588 TAATTTAATTTTTT-ATT
1 TTATTT-GTTTTTTAATT
7302605 TTATTTGTTTTTTCAATT
1 TTATTTGTTTTTT-AATT
7302623 T
1 T
7302624 GAAAAATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 6 0.21
17 13 0.46
18 9 0.32
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.72
Consensus pattern (17 bp):
TTATTTGTTTTTTAATT
Found at i:7306291 original size:14 final size:15
Alignment explanation
Indices: 7306257--7306286 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7306247 GTCACATCCC
7306257 AAAAATTGGGATAGT
1 AAAAATTGGGATAGT
*
7306272 AAAAATTGGGTTAGT
1 AAAAATTGGGATAGT
7306287 GAAATCAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (15 bp):
AAAAATTGGGATAGT
Found at i:7309122 original size:23 final size:23
Alignment explanation
Indices: 7309087--7309177 Score: 101
Period size: 23 Copynumber: 4.0 Consensus size: 23
7309077 GAGTAAGATC
* *
7309087 TGAATCTGATTCTGATATGCATT
1 TGAATATGTTTCTGATATGCATT
*
7309110 TGAATATGTTTCTGACATGCATT
1 TGAATATGTTTCTGATATGCATT
* * *
7309133 TGAATATGTTTTTGTTATGCATC
1 TGAATATGTTTCTGATATGCATT
* * *
7309156 CGACTATGTTTCTAATATGCAT
1 TGAATATGTTTCTGATATGCAT
7309178 CTAAGTCTAT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.45
Consensus pattern (23 bp):
TGAATATGTTTCTGATATGCATT
Found at i:7314983 original size:25 final size:27
Alignment explanation
Indices: 7314955--7315015 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 27
7314945 TTCTGCGTAC
*
7314955 TAATATAAGACTTT-A-TAGATCAAAA
1 TAATATAAGACTTTAATTAAATCAAAA
7314980 TAATATAAGACTTTAATTAAATCAAAA
1 TAATATAAGACTTTAATTAAATCAAAA
7315007 TAATA-AAGA
1 TAATATAAGA
7315016 GTTTTTTTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 14 0.42
26 5 0.15
27 14 0.42
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (27 bp):
TAATATAAGACTTTAATTAAATCAAAA
Found at i:7330342 original size:85 final size:85
Alignment explanation
Indices: 7330186--7330353 Score: 185
Period size: 85 Copynumber: 2.0 Consensus size: 85
7330176 GAGCTTCAAT
* * * * * * *
7330186 GATTTGGTCTACTTCTCTGTATCTTATCAGGAAGATGACCGGCTCATTATTTCAATCCACTTTTT
1 GATTTGGTCCACTTCTATGTATCTCATCAGGAAGATGACCGACTCATTATTTCAACCCACTTCTC
* *
7330251 TGTATCTCGTCAAGAAGACG
66 TATATCTCATCAAGAAGACG
* * * * *
7330271 GATTTGGTCCACTTCTATGTATCTCATCAGGAAGATGATCGATTTATTGCTTT-GACCCACTTCT
1 GATTTGGTCCACTTCTATGTATCTCATCAGGAAGATGACCGACTCATT-ATTTCAACCCACTTCT
*
7330335 CTATATCTCATCAGGAAGA
65 CTATATCTCATCAAGAAGA
7330354 TGGGGTTTGA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
85 64 0.96
86 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (85 bp):
GATTTGGTCCACTTCTATGTATCTCATCAGGAAGATGACCGACTCATTATTTCAACCCACTTCTC
TATATCTCATCAAGAAGACG
Found at i:7330414 original size:208 final size:208
Alignment explanation
Indices: 7330056--7330466 Score: 626
Period size: 208 Copynumber: 2.0 Consensus size: 208
7330046 ATTGAATCAG
* *
7330056 GAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGATGACTGCTTTATTGCTTTGACCC
1 GAAGACGAATTTGGTCCACTTCTATGCATCTCATCAGGAAGATGACTGATTTATTGCTTTGACCC
* * * *
7330121 ACTTCTCTATATCTGATCAGGAAGATGGGGTTTGAATTTTCACTCACATTGAGCTGAGCTTCAAT
66 ACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCTGACCTTCAAT
* * * * *
7330186 GATTTGGTCTACTTCTCTGTATCTTATCAGGAAGATGACCGGCTCATTATTTCAATCCACTTTTT
131 AATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCTC
7330251 TGTATCTCGTCAA
196 TGTATCTCGTCAA
* *
7330264 GAAGACGGATTTGGTCCACTTCTATGTATCTCATCAGGAAGATGA-TCGATTTATTGCTTTGACC
1 GAAGACGAATTTGGTCCACTTCTATGCATCTCATCAGGAAGATGACT-GATTTATTGCTTTGACC
* ** ** *
7330328 CACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCCCTTCAT
65 CACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCTGACCTTCAA
*
7330393 TAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCACTTCT
130 TAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCT
7330458 CTGTATCTC
195 CTGTATCTC
7330467 ATGAGGACGA
Statistics
Matches: 182, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
207 1 0.01
208 181 0.99
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (208 bp):
GAAGACGAATTTGGTCCACTTCTATGCATCTCATCAGGAAGATGACTGATTTATTGCTTTGACCC
ACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCTGACCTTCAAT
AATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCTC
TGTATCTCGTCAA
Found at i:7330456 original size:48 final size:48
Alignment explanation
Indices: 7330404--7330526 Score: 149
Period size: 48 Copynumber: 2.6 Consensus size: 48
7330394 AATTTGGTCT
* *
7330404 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATT-ATTTCAATCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTT-AACCC
* * * * * *
7330452 ACTTCTCTGTATCTCATGAGGACGATGACCGCTTTATTGCTTTGACCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAACCC
*
7330500 ACTTCTCTATATCTCATCAGGAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
7330527 GGGTTTGAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 60 0.95
49 3 0.05
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAACCC
Found at i:7330572 original size:171 final size:171
Alignment explanation
Indices: 7330278--7330612 Score: 521
Period size: 171 Copynumber: 2.0 Consensus size: 171
7330268 ACGGATTTGG
*
7330278 TCCACTTCTATGTATCTCATCAGGAAGATGATCGATTTATTGCTTTGACCCACTTCTCTATATCT
1 TCCACTTCTATGTATCTCATCAGGAAGATGACCGATTTATTGCTTTGACCCACTTCTCTATATCT
* ** *
7330343 CATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCCCTTCATTAATTTGGTCTACTT
66 CATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCTTCCCTTCAATAATTTGGTCTACTT
7330408 CTCTGTATCTCATCAGGAAGATGA-CTGCCTCATTATTTCAA
131 CTCTGTATCTCATCAGGAAGATGATC-GCCTCATTATTTCAA
* * * *
7330449 TCCACTTCTCTGTATCTCATGAGGACGATGACCGCTTTATTGCTTTGACCCACTTCTCTATATCT
1 TCCACTTCTATGTATCTCATCAGGAAGATGACCGATTTATTGCTTTGACCCACTTCTCTATATCT
* * * *
7330514 CATCAGGAAGATGGGGTTTGAATTTTCACTCACATTGAGCTGT-GCTTCAATGATTTGGTCTACT
66 CATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCT-TCCCTTCAATAATTTGGTCTACT
7330578 TCTCTGTATCTCATCAGGAAGATGATCGCCTCATT
130 TCTCTGTATCTCATCAGGAAGATGATCGCCTCATT
7330613 CCACTTCTTT
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
171 147 0.99
172 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (171 bp):
TCCACTTCTATGTATCTCATCAGGAAGATGACCGATTTATTGCTTTGACCCACTTCTCTATATCT
CATCAGGAAGATGGGGTTTGAAGTCTCACTCACATTGAGCTTCCCTTCAATAATTTGGTCTACTT
CTCTGTATCTCATCAGGAAGATGATCGCCTCATTATTTCAA
Found at i:7330764 original size:39 final size:39
Alignment explanation
Indices: 7330701--7330894 Score: 196
Period size: 39 Copynumber: 5.0 Consensus size: 39
7330691 CTTCGAATGA
*
7330701 CTGCAATCTGCCCCATGATTGGGGTAAGAAATTAGATGG
1 CTGCAATCTGCCCCATGATCGGGGTAAGAAATTAGATGG
* * *
7330740 CTGTAATCTGCCCCATGATCGGGGTAA-AAGA-TCGAGTGA
1 CTGCAATCTGCCCCATGATCGGGGTAAGAA-ATTAGA-TGG
* * * *
7330779 CTGCAATCTGACTCATGATCGGGGTAAGAGATTGGATGG
1 CTGCAATCTGCCCCATGATCGGGGTAAGAAATTAGATGG
* * * *
7330818 TTGCAATCTACCCCATGATCGGGGTAA-AAGATCAGGTGG
1 CTGCAATCTGCCCCATGATCGGGGTAAGAA-ATTAGATGG
* * * *
7330857 CTGCAATCTGCCCTATGATCAGGGTAAGAGATTGGATG
1 CTGCAATCTGCCCCATGATCGGGGTAAGAAATTAGATG
7330895 ATGATGTAAC
Statistics
Matches: 123, Mismatches: 26, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
38 6 0.05
39 112 0.91
40 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGCAATCTGCCCCATGATCGGGGTAAGAAATTAGATGG
Found at i:7330832 original size:78 final size:77
Alignment explanation
Indices: 7330693--7330894 Score: 271
Period size: 78 Copynumber: 2.6 Consensus size: 77
7330683 CTTTATTGCT
* * * * * *
7330693 TCGAATGACTGCAATCTGCCCCATGATTGGGGTAAGAAATTAGATGGCTGTAATCTGCCCCATGA
1 TCGAGTGACTGCAATCTG-CCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTACCCCATGA
7330758 TCGGGGTAAAAGA
65 TCGGGGTAAAAGA
* *
7330771 TCGAGTGACTGCAATCTGACTCATGATCGGGGTAAGAGATTGGATGGTTGCAATCTACCCCATGA
1 TCGAGTGACTGCAATCTG-CCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTACCCCATGA
7330836 TCGGGGTAAAAGA
65 TCGGGGTAAAAGA
* *
7330849 TC-AGGTGGCTGCAATCTGCCCTATGATCAGGGTAAGAGATTGGATG
1 TCGA-GTGACTGCAATCTGCCC-ATGATCGGGGTAAGAGATTGGATG
7330895 ATGATGTAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
77 3 0.03
78 107 0.97
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (77 bp):
TCGAGTGACTGCAATCTGCCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTACCCCATGAT
CGGGGTAAAAGA
Found at i:7331314 original size:99 final size:99
Alignment explanation
Indices: 7331130--7331379 Score: 272
Period size: 99 Copynumber: 2.5 Consensus size: 99
7331120 TGTCATGTTC
* * * * *
7331130 CTAAGGTACCAGGTTCGCCGTTGCAGCCTCAACCTTTCCCAT-ACAT-TTCATGGTACCGTA-TT
1 CTAAGGTACCAGGTTCGCCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCG-AGTT
* * ** * * *
7331192 CACCGTTAAGGCCTCAATCTTTCCCATCACGTTTT
65 CGCCATTGCGGCCTCAACCTTTCCCATCACATCTT
* ** * * **
7331227 TTAAGGTACTGGGTTTGTCGTTACGGCCTCAACCTTTCCCTTCATGTCTTCATGGTATCGAGTTC
1 CTAAGGTACCAGGTTCGCCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCGAGTTC
*
7331292 GCCATTGCGGCCTCAACCTTTCCCATCTCATCTT
66 GCCATTGCGGCCTCAACCTTTCCCATCACATCTT
* *
7331326 CTAAGTTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATG
1 CTAAGGTACCAGGTTCGCCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCATG
7331380 TTTTCTTGAT
Statistics
Matches: 122, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
97 34 0.28
98 3 0.02
99 85 0.70
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.34
Consensus pattern (99 bp):
CTAAGGTACCAGGTTCGCCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCGAGTTC
GCCATTGCGGCCTCAACCTTTCCCATCACATCTT
Found at i:7331375 original size:50 final size:49
Alignment explanation
Indices: 7331130--7331376 Score: 205
Period size: 50 Copynumber: 5.0 Consensus size: 49
7331120 TGTCATGTTC
*
7331130 CTAAGGTACCAGGTTCGCCGTTGCAGCCTCAACCTTTCCCAT-ACAT-TT
1 CTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
* * * ** * * *
7331178 C-ATGGTACCGTATTCACCGTTAAGGCCTCAATCTTTCCCATCACGTTTT
1 CTAAGGTACCG-GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
* * * * * * **
7331227 TTAAGGTACTGGGTTTGTCGTTACGGCCTCAACCTTTCCCTTCATGTCTT
1 CTAAGGTAC-CGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
* * * *
7331277 C-ATGGTATCGAGTTCGCCATTGCGGCCTCAACCTTTCCCATCTCATCTT
1 CTAAGGTACCG-GTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
* * *
7331326 CTAAGTTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTT
1 CTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
7331376 C
1 C
7331377 ATGTTTTCTT
Statistics
Matches: 152, Mismatches: 39, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
46 1 0.01
47 31 0.20
48 5 0.03
49 38 0.25
50 75 0.49
51 2 0.01
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.34
Consensus pattern (49 bp):
CTAAGGTACCGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT
Found at i:7332317 original size:11 final size:11
Alignment explanation
Indices: 7332303--7332362 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
7332293 TCTTTTTCCC
7332303 TTTTTTTCTTT
1 TTTTTTTCTTT
*
7332314 TTTTCTT-TTT
1 TTTTTTTCTTT
*
7332324 TATTTTTCTTT
1 TTTTTTTCTTT
*
7332335 TATTTTTCTTT
1 TTTTTTTCTTT
* *
7332346 CTTTTTTATTT
1 TTTTTTTCTTT
7332357 ATTTTT
1 -TTTTT
7332363 CTTCATTGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
10 8 0.20
11 28 0.70
12 4 0.10
ACGTcount: A:0.07, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:7332350 original size:21 final size:21
Alignment explanation
Indices: 7332305--7332365 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
7332295 TTTTTCCCTT
*
7332305 TTTTTCTTTT-TTTCTTTTTTA
1 TTTTTCTTTTATTT-TTCTTTA
*
7332326 TTTTTCTTTTATTTTTCTTTC
1 TTTTTCTTTTATTTTTCTTTA
7332347 TTTTT-TATTTATTTTTCTT
1 TTTTTCT-TTTATTTTTCTT
7332366 CATTGAATCC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 32 0.89
22 3 0.08
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTCTTTTATTTTTCTTTA
Found at i:7332358 original size:32 final size:32
Alignment explanation
Indices: 7332305--7332365 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
7332295 TTTTTCCCTT
*
7332305 TTTTTCTTTTTTTCTTTTTTATTTTTCTTTTA
1 TTTTTCTTTTTTTCTTATTTATTTTTCTTTTA
7332337 TTTTTCTTTCTTTT-TTATTTATTTTTCTT
1 TTTTTCTTT-TTTTCTTATTTATTTTTCTT
7332366 CATTGAATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.84
Consensus pattern (32 bp):
TTTTTCTTTTTTTCTTATTTATTTTTCTTTTA
Done.