Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 42 of 120
Found at i:11562604 original size:197 final size:194
Alignment explanation
Indices: 11562242--11562688 Score: 562
Period size: 195 Copynumber: 2.3 Consensus size: 194
11562232 GAAACCGACG
* * * *
11562242 CGATGGTTGAGG-ACTACATATGTTGTGAGTTCTCAACAGCTCGTGTGAGTAGCATCGTGAGTCG
1 CGATGGTTGAGGTACCACATATGTTGTGAGTCCTCGACAGCTCGTGTGAGTAGCATCATGAGTCG
* ** * * *
11562306 GGAAATGAGAAATGAATCCAAGATTATATTATAGGCCCTACGATGGTTGAGATTTATGCATAAGT
66 GAAAAAAAGAAATGAATCCAAGATCAGATTATAGGCCCTACGATGGTTGAGATTTATGCATAAAT
* *
11562371 GCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGCGAAACAGTTATA-TGCACAGATACCGT
131 GCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAG-GAAACAGTT-TACAG-ACAGACACCGT
11562435 AT
193 AT
* * *
11562437 CGATGGCTGAGGTACCACGTATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATCATGAGTC-
1 CGATGGTTGAGGTACCACATATGTTGTGAGTCCTCGACAGCTCGTGTGAGTAGCATCATGAGTCG
* * *
11562501 GAAAAAAAGATATGAATCCTAA-A-CAGATTATAGGCCCTACGATGGTTGGGATTTATGCTTAAA
66 GAAAAAAAGAAATGAATCC-AAGATCAGATTATAGGCCCTACGATGGTTGAGATTTATGCATAAA
* ** *
11562564 TGCATCATATTCTTGACAGCTCGTGTGAGCAGCATCGTTAGGGGACAGTTTACAGACAGACATCG
130 TG---CATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGGAAACAGTTTACAGACAGACACCG
11562629 TAT
192 TAT
* * * *
11562632 TGATGGTTGGGGTACCGCATATGTTGTGAGTCCTCGATAGCTCGTGTGAGTAGCATC
1 CGATGGTTGAGGTACCACATATGTTGTGAGTCCTCGACAGCTCGTGTGAGTAGCATC
11562689 GGGTATTGGT
Statistics
Matches: 217, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
194 37 0.17
195 90 0.41
196 55 0.25
197 35 0.16
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (194 bp):
CGATGGTTGAGGTACCACATATGTTGTGAGTCCTCGACAGCTCGTGTGAGTAGCATCATGAGTCG
GAAAAAAAGAAATGAATCCAAGATCAGATTATAGGCCCTACGATGGTTGAGATTTATGCATAAAT
GCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGGAAACAGTTTACAGACAGACACCGTAT
Found at i:11563399 original size:21 final size:21
Alignment explanation
Indices: 11563352--11563401 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
11563342 GAGTTTTTAA
* *
11563352 TATCGGTATAAGTATGACATG
1 TATCGGTAAAAGTATCACATG
* * *
11563373 TTTCGGTAAAAGTCTCACTTG
1 TATCGGTAAAAGTATCACATG
11563394 TATCGGTA
1 TATCGGTA
11563402 GTACTGCTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (21 bp):
TATCGGTAAAAGTATCACATG
Found at i:11566995 original size:28 final size:28
Alignment explanation
Indices: 11566974--11567028 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
11566964 TAACGAATAG
*
11566974 TTGCCACAAAGGCATTCTTAACAGAGAT
1 TTGCCACAAAGACATTCTTAACAGAGAT
* *
11567002 TTGCCACAATGACATTCTTAATAGAGA
1 TTGCCACAAAGACATTCTTAACAGAGA
11567029 GTTTCCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (28 bp):
TTGCCACAAAGACATTCTTAACAGAGAT
Found at i:11568903 original size:78 final size:79
Alignment explanation
Indices: 11568716--11568951 Score: 393
Period size: 79 Copynumber: 3.0 Consensus size: 79
11568706 CTTCCTTTAC
*
11568716 AGAGAATGCCACAAGGGCGCTGATAGCATTACAAATGACATATATTTTCTCTCTAAATTGGTGTT
1 AGAGAATGCCACAAGGGCGTTGATAGCATTACAAATGACATATATTTTCTCTCTAAATTGGTGTT
11568781 TTAATTGTCTCTTT
66 TTAATTGTCTCTTT
* * * *
11568795 AGAGAATACCACAAGGGCATTAATAGCATTACAAATGACATATATTTTCTCCCTAAATTGGT-TT
1 AGAGAATGCCACAAGGGCGTTGATAGCATTACAAATGACATATATTTTCTCTCTAAATTGGTGTT
11568859 TTAATTGTCTCTTT
66 TTAATTGTCTCTTT
* * *
11568873 AGAGAATGCCCCAAGGGCGTTGATAGCATTACAAATGACATATACTTTCTCTCTATATTGGTGTT
1 AGAGAATGCCACAAGGGCGTTGATAGCATTACAAATGACATATATTTTCTCTCTAAATTGGTGTT
11568938 TTAATTGTCTCTTT
66 TTAATTGTCTCTTT
11568952 TGTACCTTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
78 71 0.49
79 73 0.51
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (79 bp):
AGAGAATGCCACAAGGGCGTTGATAGCATTACAAATGACATATATTTTCTCTCTAAATTGGTGTT
TTAATTGTCTCTTT
Found at i:11572979 original size:41 final size:41
Alignment explanation
Indices: 11572928--11573170 Score: 326
Period size: 41 Copynumber: 5.9 Consensus size: 41
11572918 CGTCTTAAAC
* * * *
11572928 AATCTTATGCTC-TACCGAGTCATAAGTCTTCCTTTAAATAT
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTT-AATAT
* *
11572969 AATCTCATGCTCATCCCGAGTCACGAGTCTTCCTTTAATAT
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTTAATAT
*
11573010 AATCTCATGCTCATCCCGAGACATGAGTGTTCCTTTAATAT
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTTAATAT
* *
11573051 AATCTCATACTCATCCCGAGACATGAGTCTTCCTTTAATTT
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTTAATAT
* *** * *
11573092 AATTTCATGCTCATTTTGAGTCACGAGTCTTCCTTTAATAT
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTTAATAT
11573133 AATCTCATGCTCATCCCGAGACATGAGTCTTCCATTTA
1 AATCTCATGCTCATCCCGAGACATGAGTCTTCC-TTTA
11573171 TACTTAAAGT
Statistics
Matches: 176, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 152 0.86
42 24 0.14
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (41 bp):
AATCTCATGCTCATCCCGAGACATGAGTCTTCCTTTAATAT
Found at i:11573121 original size:123 final size:125
Alignment explanation
Indices: 11572942--11573170 Score: 372
Period size: 123 Copynumber: 1.8 Consensus size: 125
11572932 TTATGCTCTA
*
11572942 CCGAGTCATAAGTCTTCCTTTAAATATAATCTCATGCTCATCCCGAGTCACGAGTCTTCCTTTAA
1 CCGAGACATAAGTCTTCCTTTAAATATAATCTCATGCTCATCCCGAGTCACGAGTCTTCCTTTAA
*
11573007 TATAATCTCATGCTCATCCCGAGACATGAGTGTTCC-TTTAATATAATCTCATACTCATC
66 TATAATCTCATGCTCATCCCGAGACATGAGTCTTCCATTTAATATAATCTCATACTCATC
* * * ***
11573066 CCGAGACATGAGTCTTCCTTT-AATTTAATTTCATGCTCATTTTGAGTCACGAGTCTTCCTTTAA
1 CCGAGACATAAGTCTTCCTTTAAATATAATCTCATGCTCATCCCGAGTCACGAGTCTTCCTTTAA
11573130 TATAATCTCATGCTCATCCCGAGACATGAGTCTTCCATTTA
66 TATAATCTCATGCTCATCCCGAGACATGAGTCTTCCATTTA
11573171 TACTTAAAGT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
123 73 0.76
124 23 0.24
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (125 bp):
CCGAGACATAAGTCTTCCTTTAAATATAATCTCATGCTCATCCCGAGTCACGAGTCTTCCTTTAA
TATAATCTCATGCTCATCCCGAGACATGAGTCTTCCATTTAATATAATCTCATACTCATC
Found at i:11584759 original size:28 final size:26
Alignment explanation
Indices: 11584693--11584772 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
11584683 AAATGCGTGC
**
11584693 CCTTTCAA-AGTCAGCCATAAAGGCTT
1 CCTTTCAAGAGTTTGCCATAAAGG-TT
11584719 CCTTT-AAGGAGTTTGCCATAAAGGTT
1 CCTTTCAA-GAGTTTGCCATAAAGGTT
*
11584745 CACCTTTCAAGAGTTTAGCCACAAAGGT
1 --CCTTTCAAGAGTTT-GCCATAAAGGT
11584773 CGTTCCGTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
25 2 0.04
26 7 0.16
27 13 0.29
28 11 0.24
29 12 0.27
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CCTTTCAAGAGTTTGCCATAAAGGTT
Found at i:11585483 original size:23 final size:25
Alignment explanation
Indices: 11585457--11585502 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11585447 CCAATTAGGG
11585457 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
11585480 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
11585503 TGAATCTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:11589448 original size:7 final size:8
Alignment explanation
Indices: 11589420--11589458 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
11589410 AAAAAATGAA
*
11589420 AAAAAATA
1 AAAAAATT
11589428 AAAAAATTT
1 AAAAAA-TT
*
11589437 GAAAAATT
1 AAAAAATT
11589445 AAAAAATT
1 AAAAAATT
11589453 AAAAAA
1 AAAAAA
11589459 AATTAGTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (8 bp):
AAAAAATT
Found at i:11589462 original size:18 final size:18
Alignment explanation
Indices: 11589408--11589463 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
11589398 ATGTTATTTT
*
11589408 TTAAAAAATGAAAAAAAA
1 TTAAAAAATTAAAAAAAA
* **
11589426 TAAAAAAATT-TGAAAAA
1 TTAAAAAATTAAAAAAAA
11589443 TTAAAAAATTAAAAAAAA
1 TTAAAAAATTAAAAAAAA
11589461 TTA
1 TTA
11589464 GTACATTTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 14 0.47
18 16 0.53
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (18 bp):
TTAAAAAATTAAAAAAAA
Found at i:11589491 original size:7 final size:7
Alignment explanation
Indices: 11589479--11589599 Score: 217
Period size: 7 Copynumber: 17.4 Consensus size: 7
11589469 TTTATTTTCA
*
11589479 TTTTCAT
1 TTTTCGT
*
11589486 TTTTCAT
1 TTTTCGT
11589493 TTTTCG-
1 TTTTCGT
11589499 TTTTCGT
1 TTTTCGT
11589506 TTTTCGT
1 TTTTCGT
11589513 TTTTCGT
1 TTTTCGT
11589520 TTTTCGT
1 TTTTCGT
11589527 TTTTCGT
1 TTTTCGT
11589534 TTTTCGT
1 TTTTCGT
11589541 TTTTCGT
1 TTTTCGT
11589548 TTTTCGT
1 TTTTCGT
11589555 TTTTCGT
1 TTTTCGT
11589562 TTTTCGT
1 TTTTCGT
11589569 TTTTCGT
1 TTTTCGT
11589576 TTTTCGT
1 TTTTCGT
11589583 TTTTCGT
1 TTTTCGT
11589590 TTTTCGT
1 TTTTCGT
11589597 TTT
1 TTT
11589600 CATTTTCATT
Statistics
Matches: 112, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
6 6 0.05
7 106 0.95
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.72
Consensus pattern (7 bp):
TTTTCGT
Found at i:11590523 original size:13 final size:13
Alignment explanation
Indices: 11590505--11590539 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
11590495 TTAGAAAAAG
11590505 AAAGAAAAGTCGA
1 AAAGAAAAGTCGA
*
11590518 AAAGAAAAATCGA
1 AAAGAAAAGTCGA
*
11590531 AAAAAAAAG
1 AAAGAAAAG
11590540 AAAAAAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.17, T:0.06
Consensus pattern (13 bp):
AAAGAAAAGTCGA
Found at i:11591604 original size:23 final size:25
Alignment explanation
Indices: 11591578--11591623 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11591568 CCAATTAGGG
11591578 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
11591601 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
11591624 TGAATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:11602240 original size:23 final size:20
Alignment explanation
Indices: 11602213--11602267 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 20
11602203 TGATATGTAT
11602213 TTAATTTGTAATCTTTAGAAGA
1 TTAATTTGTAATC-TTAGAA-A
11602235 TATAATTTTGTAATCTTAGAAA
1 T-TAA-TTTGTAATCTTAGAAA
11602257 TTGAATTTGTA
1 TT-AATTTGTA
11602268 GATAGCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
21 7 0.23
22 5 0.17
23 9 0.30
24 9 0.30
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (20 bp):
TTAATTTGTAATCTTAGAAA
Found at i:11605410 original size:58 final size:59
Alignment explanation
Indices: 11605299--11605411 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 59
11605289 TGGTTGAAAC
* * *
11605299 CACCTTTTTCAATACTTAAAATTTTTTATTTTGGATTTATCCCTACTGATGGCCGGCAT
1 CACCTTTTTCAATACTCAAAATTTTTTATTCTGGATTTAACCCTACTGATGGCCGGCAT
* * * * *
11605358 CACCTTTTTTAGTACTCGAAATTTTTT-TTCTGGTTTTAACCCTATTGATGGCCG
1 CACCTTTTTCAATACTCAAAATTTTTTATTCTGGATTTAACCCTACTGATGGCCG
11605412 ACACCCCAGT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
58 23 0.50
59 23 0.50
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.45
Consensus pattern (59 bp):
CACCTTTTTCAATACTCAAAATTTTTTATTCTGGATTTAACCCTACTGATGGCCGGCAT
Found at i:11607331 original size:14 final size:14
Alignment explanation
Indices: 11607312--11607364 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
11607302 TTTATATATT
11607312 TTAAAAATATATAA
1 TTAAAAATATATAA
11607326 TTAAAAAATAATATAA
1 TT-AAAAAT-ATATAA
**
11607342 TTTTTAAA-ATATAA
1 -TTAAAAATATATAA
11607356 TTAAAAATA
1 TTAAAAATA
11607365 AATTTTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 5 0.16
14 9 0.29
15 6 0.19
16 9 0.29
17 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAAAATATATAA
Found at i:11607339 original size:16 final size:15
Alignment explanation
Indices: 11607304--11607362 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
11607294 CAACCCAATT
* *
11607304 TATATATTTTAAAAA
1 TATATAATTAAAAAA
11607319 TATATAATTAAAAAA
1 TATATAATTAAAAAA
***
11607334 TAATATAATTTTTAAA
1 T-ATATAATTAAAAAA
11607350 -ATATAATTAAAAA
1 TATATAATTAAAAA
11607363 TAAATTTTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 10 0.29
15 14 0.40
16 11 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TATATAATTAAAAAA
Found at i:11607554 original size:34 final size:34
Alignment explanation
Indices: 11607491--11607555 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
11607481 TCAAATCAAA
*
11607491 TGAAAATTAAATTAAATGAAAAAAGAATATAAGT
1 TGAAAATTAAATAAAATGAAAAAAGAATATAAGT
*
11607525 TGAAATTTAAAATAAAAT-AAAATAA-AATATA
1 TGAAAATT-AAATAAAATGAAAA-AAGAATATA
11607556 TTTTAACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 17 0.63
35 10 0.37
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.28
Consensus pattern (34 bp):
TGAAAATTAAATAAAATGAAAAAAGAATATAAGT
Found at i:11607617 original size:24 final size:25
Alignment explanation
Indices: 11607590--11607637 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
11607580 AAATTTATTT
*
11607590 AAAAACAAAACAATATATA-AAATA
1 AAAAAAAAAACAATATATATAAATA
*
11607614 AAAAAAAAAATAATATATATAAAT
1 AAAAAAAAAACAATATATATAAAT
11607638 TTTAGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (25 bp):
AAAAAAAAAACAATATATATAAATA
Found at i:11612104 original size:12 final size:12
Alignment explanation
Indices: 11612048--11612115 Score: 52
Period size: 12 Copynumber: 5.9 Consensus size: 12
11612038 ATAACATCCA
11612048 AACAA-AAAAAT
1 AACAACAAAAAT
* *
11612059 AACAACCAAAAC
1 AACAACAAAAAT
* *
11612071 AGCAGCAAAAAT
1 AACAACAAAAAT
*
11612083 AA-TA-AAAAAT
1 AACAACAAAAAT
*
11612093 AGCAACAAAAAT
1 AACAACAAAAAT
*
11612105 AACAATAAAAA
1 AACAACAAAAA
11612116 ATCAAAATAG
Statistics
Matches: 41, Mismatches: 13, Indels: 5
0.69 0.22 0.08
Matches are distributed among these distances:
10 7 0.17
11 6 0.15
12 28 0.68
ACGTcount: A:0.72, C:0.15, G:0.04, T:0.09
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:11612156 original size:54 final size:54
Alignment explanation
Indices: 11612024--11612185 Score: 142
Period size: 53 Copynumber: 3.1 Consensus size: 54
11612014 AAACAATAAT
* * * * * *
11612024 AAAAA-AGCATAAAAATAACATCCAAACAA-AAAAAT-AACAACCAAAACAGCAGC
1 AAAAATAGCATAAAAATAACAACCAAA-AATAAAAATAAAAAATCAAAATAGTA-A
* *
11612077 AAAAATA--ATAAAAAATAGCAA-CAAAAATAACAATAAAAAATCAAAATAGTAA
1 AAAAATAGCAT-AAAAATAACAACCAAAAATAAAAATAAAAAATCAAAATAGTAA
*
11612129 AAAAATAGCATAAAAATAACAACC-AAAATAATAAA-AAAAGCATCAAAATAGTAA
1 AAAAATAGCATAAAAATAACAACCAAAAATAA-AAATAAAA-AATCAAAATAGTAA
11612183 AAA
1 AAA
11612186 CACAACACCA
Statistics
Matches: 89, Mismatches: 11, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
51 2 0.02
52 18 0.20
53 47 0.53
54 22 0.25
ACGTcount: A:0.70, C:0.13, G:0.05, T:0.12
Consensus pattern (54 bp):
AAAAATAGCATAAAAATAACAACCAAAAATAAAAATAAAAAATCAAAATAGTAA
Found at i:11612162 original size:21 final size:20
Alignment explanation
Indices: 11612138--11612220 Score: 62
Period size: 20 Copynumber: 3.9 Consensus size: 20
11612128 AAAAAATAGC
11612138 ATAAAAATAACAACCAAAATA
1 ATAAAAA-AACAACCAAAATA
*
11612159 ATAAAAAAAGC-ATCAAAATA
1 ATAAAAAAA-CAACCAAAATA
* *
11612179 GTAAAAACACAACACCAAAATA
1 ATAAAAAAAC-A-ACCAAAATA
11612201 GCA-AAAAATAACAACCAAAA
1 --ATAAAAA-AACAACCAAAA
11612221 CAGCAAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
19 1 0.02
20 17 0.35
21 8 0.16
22 15 0.31
23 6 0.12
24 2 0.04
ACGTcount: A:0.69, C:0.17, G:0.04, T:0.11
Consensus pattern (20 bp):
ATAAAAAAACAACCAAAATA
Found at i:11612165 original size:22 final size:21
Alignment explanation
Indices: 11612130--11612230 Score: 87
Period size: 22 Copynumber: 4.7 Consensus size: 21
11612120 AAATAGTAAA
*
11612130 AAAATAGCATAAAAATAACAACC
1 AAAATAGTA-AAAAATAAC-ACC
* * *
11612153 AAAATAATAAAAAA-AGCATC
1 AAAATAGTAAAAAATAACACC
*
11612173 AAAATAGTAAAAACACAACACC
1 AAAATAGTAAAAA-ATAACACC
*
11612195 AAAATAGCAAAAAATAACAACC
1 AAAATAGTAAAAAATAAC-ACC
* *
11612217 AAAACAGCAAAAAA
1 AAAATAGTAAAAAA
11612231 AAAAGCACCA
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
20 14 0.22
21 7 0.11
22 37 0.57
23 7 0.11
ACGTcount: A:0.68, C:0.17, G:0.05, T:0.10
Consensus pattern (21 bp):
AAAATAGTAAAAAATAACACC
Found at i:11612199 original size:54 final size:53
Alignment explanation
Indices: 11612087--11612214 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
11612077 AAAAATAATA
* * * *
11612087 AAAAATAGCAACAAAAATAACAATAAAAAATCAAAATAGTAAAAAAATAGCAT
1 AAAAATAACAACAAAAATAACAATAAAAAATCAAAATAGTAAAAAAACAACAC
* * *
11612140 AAAAATAACAACCAAAATAATAA-AAAAAGCATCAAAATAGTAAAAACACAACAC
1 AAAAATAACAACAAAAATAACAATAAAAA--ATCAAAATAGTAAAAAAACAACAC
* *
11612194 CAAAATAGC-A-AAAAATAACAA
1 AAAAATAACAACAAAAATAACAA
11612215 CCAAAACAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
52 14 0.23
53 21 0.34
54 27 0.44
ACGTcount: A:0.70, C:0.13, G:0.05, T:0.12
Consensus pattern (53 bp):
AAAAATAACAACAAAAATAACAATAAAAAATCAAAATAGTAAAAAAACAACAC
Found at i:11614698 original size:5 final size:5
Alignment explanation
Indices: 11614688--11614715 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
11614678 TAAATGTAAA
11614688 AAAAG AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAA
11614716 GAACCTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:11619455 original size:13 final size:13
Alignment explanation
Indices: 11619439--11619482 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
11619429 TGTGGTGGAA
11619439 AAGTTCTTTTGAG
1 AAGTTCTTTTGAG
11619452 AAGTTCTTTTGAG
1 AAGTTCTTTTGAG
* *
11619465 AAGTACTTTTGAA
1 AAGTTCTTTTGAG
11619478 AAGTT
1 AAGTT
11619483 TGGTTAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (13 bp):
AAGTTCTTTTGAG
Found at i:11621001 original size:100 final size:99
Alignment explanation
Indices: 11620882--11621097 Score: 342
Period size: 100 Copynumber: 2.2 Consensus size: 99
11620872 ATATGAAAAT
*
11620882 AAAACAATTTAAATAAATATTTATATGTATATAAAACACCAAAGCTGAACAAAAACAATTTAAAT
1 AAAACAATTTAAATAAATATTTATATGTACATAAAACACCAAAGCTGAACAAAAACAATTTAAAT
11620947 AAATATTTTTTTAATATAAAACACTAGATCTGAAC
66 AAATA-TTTTTTAATATAAAACACTAGATCTGAAC
* ** * **
11620982 AAAACAATTTAAATAAATATTTATATTTACATAAAACATTAGATTTGAACAAAAACAATTTAAAT
1 AAAACAATTTAAATAAATATTTATATGTACATAAAACACCAAAGCTGAACAAAAACAATTTAAAT
11621047 AAATATTTTTTAATATAAAACACTAGATCTGAAC
66 AAATATTTTTTAATATAAAACACTAGATCTGAAC
* *
11621081 AAAGCAATTTAGATAAA
1 AAAACAATTTAAATAAA
11621098 CAAGATCTGA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 44 0.41
100 63 0.59
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.32
Consensus pattern (99 bp):
AAAACAATTTAAATAAATATTTATATGTACATAAAACACCAAAGCTGAACAAAAACAATTTAAAT
AAATATTTTTTAATATAAAACACTAGATCTGAAC
Found at i:11625770 original size:23 final size:22
Alignment explanation
Indices: 11625731--11625773 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
11625721 TGATCATGGC
11625731 AATGCAATTTTTATAAAACAGT
1 AATGCAATTTTTATAAAACAGT
11625753 AATGCAGATTTATT-TAAAACA
1 AATGCA-ATTT-TTATAAAACA
11625774 TCCTACGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 11 0.58
24 2 0.11
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (22 bp):
AATGCAATTTTTATAAAACAGT
Found at i:11625954 original size:40 final size:40
Alignment explanation
Indices: 11625900--11625991 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
11625890 GAGCAATAAG
* *
11625900 TAATGCAGAAAAACTGCCAGTAATGCAGACAAGCCACCAA
1 TAATGCAGATAAACTACCAGTAATGCAGACAAGCCACCAA
* * ** *
11625940 TATTGCATATAAACTACCAGTAATGTGGTCAAGCCACCAA
1 TAATGCAGATAAACTACCAGTAATGCAGACAAGCCACCAA
11625980 TAATGCAGATAA
1 TAATGCAGATAA
11625992 GGCTGCCAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (40 bp):
TAATGCAGATAAACTACCAGTAATGCAGACAAGCCACCAA
Found at i:11630320 original size:81 final size:80
Alignment explanation
Indices: 11630133--11630375 Score: 333
Period size: 81 Copynumber: 3.0 Consensus size: 80
11630123 TTATCACCAT
* * * * *
11630133 ATAAATCTATCAATTCCTAGCACCCGGTGCCTAGCGAATAAACTGCAATAAGTGAGCCTAGCTCT
1 ATAATTCTGTCAATTCCTAGCACCCAGTGCCTAGCGGATAAA-TGCAATAAGTGAGCC-CGCTCT
*
11630198 AGTTGGATTAACCAATG
64 AGTTGGATTAACCAACG
* *
11630215 ATAATTCTGTCAATTCCTGGCACCCAGTGCCTAGAGGATAAATAGCAATAAGTGAGCCCGCTCTA
1 ATAATTCTGTCAATTCCTAGCACCCAGTGCCTAGCGGATAAAT-GCAATAAGTGAGCCCGCTCTA
11630280 GTTGGATTAACCAACG
65 GTTGGATTAACCAACG
* * *
11630296 ATAATTCTGTCAATTCCTAACACCCAATGACTAGCGGATAAATTGCAATAAGTGAGCCCAGCTCT
1 ATAATTCTGTCAATTCCTAGCACCCAGTGCCTAGCGGATAAA-TGCAATAAGTGAGCCC-GCTCT
*
11630361 AGGTGGATTAACCAA
64 AGTTGGATTAACCAA
11630376 TGGTTTTGCG
Statistics
Matches: 144, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
81 74 0.51
82 70 0.49
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (80 bp):
ATAATTCTGTCAATTCCTAGCACCCAGTGCCTAGCGGATAAATGCAATAAGTGAGCCCGCTCTAG
TTGGATTAACCAACG
Found at i:11631045 original size:2 final size:2
Alignment explanation
Indices: 11631038--11631073 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
11631028 AACTATTTAA
11631038 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11631074 CTGCGTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11638090 original size:25 final size:26
Alignment explanation
Indices: 11638041--11638097 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
11638031 CACCAACTCG
*
11638041 AAGCCTACTAAATAATCATCGGCTCA
1 AAGCCTACTAAATAATCATCAGCTCA
*
11638067 AAGCCTACTAAA-AATCA-CTAGCTCG
1 AAGCCTACTAAATAATCATC-AGCTCA
11638092 AAGCCT
1 AAGCCT
11638098 GTTAAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 15 0.54
26 12 0.43
ACGTcount: A:0.39, C:0.28, G:0.12, T:0.21
Consensus pattern (26 bp):
AAGCCTACTAAATAATCATCAGCTCA
Found at i:11640705 original size:26 final size:25
Alignment explanation
Indices: 11640663--11640723 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 25
11640653 ATTTAGCTCA
*
11640663 TACGAGCCCAGTAAGTAAATCGATCT
1 TACGAG-CCAATAAGTAAATCGATCT
** *
11640689 TACGAGCCAATATAGTATGTCGCTCT
1 TACGAGCCAATA-AGTAAATCGATCT
*
11640715 TACAAGCCA
1 TACGAGCCA
11640724 GTGCAGTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (25 bp):
TACGAGCCAATAAGTAAATCGATCT
Found at i:11640731 original size:26 final size:26
Alignment explanation
Indices: 11640702--11640751 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
11640692 GAGCCAATAT
* *
11640702 AGTATGTCGCTCTTACAAGCCAGTGC
1 AGTATATCGCACTTACAAGCCAGTGC
* *
11640728 AGTATATTGCACTTACGAGCCAGT
1 AGTATATCGCACTTACAAGCCAGT
11640752 ATCGCTCTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AGTATATCGCACTTACAAGCCAGTGC
Found at i:11640766 original size:19 final size:19
Alignment explanation
Indices: 11640739--11640806 Score: 109
Period size: 19 Copynumber: 3.6 Consensus size: 19
11640729 GTATATTGCA
11640739 CTTACGAGCCAGTATCGCT
1 CTTACGAGCCAGTATCGCT
* *
11640758 CTCACGAGCCAGTATCTCT
1 CTTACGAGCCAGTATCGCT
*
11640777 CTTATGAGCCAGTATCGCT
1 CTTACGAGCCAGTATCGCT
11640796 CTTACGAGCCA
1 CTTACGAGCCA
11640807 ATACAGTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (19 bp):
CTTACGAGCCAGTATCGCT
Found at i:11642217 original size:3 final size:3
Alignment explanation
Indices: 11642209--11642301 Score: 116
Period size: 3 Copynumber: 31.3 Consensus size: 3
11642199 TTTTCACATT
* *
11642209 TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC TTC ATC TTC TTC TTC ATC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * *
11642256 ATC ATC ATC TTC TTA TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
11642302 CTACACGGCT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
2 2 0.02
3 79 0.98
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:11643069 original size:41 final size:41
Alignment explanation
Indices: 11643014--11643153 Score: 190
Period size: 41 Copynumber: 3.4 Consensus size: 41
11643004 ATAACTCGGA
* * *
11643014 ATGAGTATGGGATTATGAATAAGAAAGACTCATGTCTTGAG
1 ATGAGAATGAGATTATGAATAAGGAAGACTCATGTCTTGAG
* *
11643055 ATAATAATGAGATTATGAATAAGGAAGACTCATGTCTTGAG
1 ATGAGAATGAGATTATGAATAAGGAAGACTCATGTCTTGAG
* * * *
11643096 TTGGGAATGAGATTATGATTAAGGAAGACTCATGTCTCGAG
1 ATGAGAATGAGATTATGAATAAGGAAGACTCATGTCTTGAG
*
11643137 ATGAGAATGAGAATATG
1 ATGAGAATGAGATTATG
11643154 GTTAAAGGAA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 85 1.00
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (41 bp):
ATGAGAATGAGATTATGAATAAGGAAGACTCATGTCTTGAG
Found at i:11646435 original size:245 final size:245
Alignment explanation
Indices: 11646005--11646492 Score: 958
Period size: 245 Copynumber: 2.0 Consensus size: 245
11645995 ATGTGAAAAC
11646005 GCTTTATCCCAACACATTATTATAGGGAGTTCAAAACCAGACATCGACGACTTGTTCAAGGAAGT
1 GCTTTATCCCAACACATTATTATAGGGAGTTCAAAACCAGACATCGACGACTTGTTCAAGGAAGT
11646070 AGATCAGTTGATGAGTACTTCACGAAGAGATGGCCAAAAGAAAGGAGGATTCCAAGTGATCTCTC
66 AGATCAGTTGATGAGTACTTCACGAAGAGATGGCCAAAAGAAAGGAGGATTCCAAGTGATCTCTC
*
11646135 ACATTTTGAGTAATGTTGTTAGTGTAGTTCAAAAGATCATGAGAGTTTTTGATGTCCAATCCAAT
131 ACATTTTGAGTAATGTTGTTAGTGTAGTTCAAAAGATCACGAGAGTTTTTGATGTCCAATCCAAT
11646200 ATCCAACTAGAGAAAAAAGTATAACTTTGTTCGTTTTGTTGACTCTTAAA
196 ATCCAACTAGAGAAAAAAGTATAACTTTGTTCGTTTTGTTGACTCTTAAA
11646250 GCTTTATCCCAACACATTATTATAGGGAGTTCAAAACCAGACATCGACGACTTGTTCAAGGAAGT
1 GCTTTATCCCAACACATTATTATAGGGAGTTCAAAACCAGACATCGACGACTTGTTCAAGGAAGT
11646315 AGATCAGTTGATGAGTACTTCACGAAGAGATGGCCAAAAGAAAGGAGGATTCCAAGTGATCTCTC
66 AGATCAGTTGATGAGTACTTCACGAAGAGATGGCCAAAAGAAAGGAGGATTCCAAGTGATCTCTC
11646380 ACATTTTGAGTAATGTTGTTAGTGTAGTTCAAAAGATCACGAGAGTTTTTGATGTCCAATCCAAT
131 ACATTTTGAGTAATGTTGTTAGTGTAGTTCAAAAGATCACGAGAGTTTTTGATGTCCAATCCAAT
*
11646445 ATCCAACTAGAGAAAAAAGTATGACTTTGTTCGTTTTGTTGACTCTTA
196 ATCCAACTAGAGAAAAAAGTATAACTTTGTTCGTTTTGTTGACTCTTA
11646493 CTCTAGTGAA
Statistics
Matches: 241, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
245 241 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (245 bp):
GCTTTATCCCAACACATTATTATAGGGAGTTCAAAACCAGACATCGACGACTTGTTCAAGGAAGT
AGATCAGTTGATGAGTACTTCACGAAGAGATGGCCAAAAGAAAGGAGGATTCCAAGTGATCTCTC
ACATTTTGAGTAATGTTGTTAGTGTAGTTCAAAAGATCACGAGAGTTTTTGATGTCCAATCCAAT
ATCCAACTAGAGAAAAAAGTATAACTTTGTTCGTTTTGTTGACTCTTAAA
Found at i:11656314 original size:23 final size:23
Alignment explanation
Indices: 11656284--11656329 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
11656274 CGTGTGTAGA
11656284 CTAGTTTAACTATAACACAAGTC
1 CTAGTTTAACTATAACACAAGTC
* * *
11656307 CTAGTTTACCTCTAGCACAAGTC
1 CTAGTTTAACTATAACACAAGTC
11656330 ATTCTTTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (23 bp):
CTAGTTTAACTATAACACAAGTC
Found at i:11657125 original size:26 final size:26
Alignment explanation
Indices: 11657086--11657171 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
11657076 AGTACATAGT
* *
11657086 TGCTAAACATTCACCAGCTCGAAGCC
1 TGCTAAATAATCACCAGCTCGAAGCC
* *
11657112 TGCTAAATAATCACCGGCTCAAAGCC
1 TGCTAAATAATCACCAGCTCGAAGCC
* * *
11657138 TGCTAAA-AACCACCTGCTCGAAGCT
1 TGCTAAATAATCACCAGCTCGAAGCC
11657163 TGCTAAATA
1 TGCTAAATA
11657172 GTCAACTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 21 0.41
26 30 0.59
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (26 bp):
TGCTAAATAATCACCAGCTCGAAGCC
Found at i:11657161 original size:25 final size:26
Alignment explanation
Indices: 11657097--11657171 Score: 98
Period size: 25 Copynumber: 2.9 Consensus size: 26
11657087 GCTAAACATT
*
11657097 CACCAGCTCGAAGCCTGCTAAATAAT
1 CACCAGCTCGAAGCCTGCTAAATAAC
* *
11657123 CACCGGCTCAAAGCCTGCTAAA-AAC
1 CACCAGCTCGAAGCCTGCTAAATAAC
* *
11657148 CACCTGCTCGAAGCTTGCTAAATA
1 CACCAGCTCGAAGCCTGCTAAATA
11657172 GTCAACTCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 21 0.50
26 21 0.50
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.19
Consensus pattern (26 bp):
CACCAGCTCGAAGCCTGCTAAATAAC
Found at i:11665825 original size:24 final size:24
Alignment explanation
Indices: 11665795--11665896 Score: 159
Period size: 24 Copynumber: 4.2 Consensus size: 24
11665785 TTTAGCCAAC
* *
11665795 ACGAGCCTAGAAGGATTAGCTTTT
1 ACGAGCCCAGAAGGATTAGCTCTT
*
11665819 ACAAGCCCAGAAGGATTAGCTCTT
1 ACGAGCCCAGAAGGATTAGCTCTT
11665843 ACGAGCCCAGAAGGATTAGCTCTT
1 ACGAGCCCAGAAGGATTAGCTCTT
* *
11665867 ACGAGCCCAAAATGATTAGCTCTT
1 ACGAGCCCAGAAGGATTAGCTCTT
11665891 ACGAGC
1 ACGAGC
11665897 TAAGATAGAG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (24 bp):
ACGAGCCCAGAAGGATTAGCTCTT
Found at i:11667902 original size:15 final size:15
Alignment explanation
Indices: 11667884--11667919 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
11667874 AATTCGTTAG
*
11667884 AACCAATTTTACCAA
1 AACCAATTTCACCAA
*
11667899 AACCAGTTTCACCAA
1 AACCAATTTCACCAA
11667914 AACCAA
1 AACCAA
11667920 AAGAGGTGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (15 bp):
AACCAATTTCACCAA
Found at i:11672469 original size:24 final size:24
Alignment explanation
Indices: 11672436--11672490 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
11672426 GTTAAGAGTA
11672436 AAAATTGTCAGTGCAAATGTAATAC
1 AAAA-TGTCAGTGCAAATGTAATAC
* *
11672461 AAAATGTCAGTGCAATTGTAATAT
1 AAAATGTCAGTGCAAATGTAATAC
11672485 AAAATG
1 AAAATG
11672491 AATTGATTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.29
Consensus pattern (24 bp):
AAAATGTCAGTGCAAATGTAATAC
Found at i:11676853 original size:17 final size:19
Alignment explanation
Indices: 11676823--11676860 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
11676813 TAGCTAAAAA
*
11676823 TAAAGTTATTTA-TTTATT
1 TAAAGTTATCTATTTTATT
11676841 TAAA-TTATCTATTTTATT
1 TAAAGTTATCTATTTTATT
11676859 TA
1 TA
11676861 CTTTTCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (19 bp):
TAAAGTTATCTATTTTATT
Found at i:11676929 original size:19 final size:20
Alignment explanation
Indices: 11676882--11676929 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
11676872 TTGATAATTC
11676882 TTAA-TATTA-AATTATAAA
1 TTAATTATTATAATTATAAA
*
11676900 TTAAATT-TTATAATT-TATA
1 TT-AATTATTATAATTATAAA
11676919 TTAATTATTAT
1 TTAATTATTAT
11676930 CAAGAGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.24
19 14 0.56
20 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTATTATAATTATAAA
Found at i:11677175 original size:107 final size:108
Alignment explanation
Indices: 11676857--11677175 Score: 463
Period size: 107 Copynumber: 3.0 Consensus size: 108
11676847 ATCTATTTTA
* *
11676857 TTTACTTTTC-AAGTTTTGATAATTCTTAATATTAAATTATAAATTAAATTTTATAATTTATATT
1 TTTATTTTTCAAAATTTTGATAATTCTTAATATT-AATTATAAATTAAATTTTATAATTTATATT
* *
11676921 AATTATTATCAAGAGTTTAAATTAAGATTTTTCTTTTAATA---
65 AATTATTATCAAGAGTTTGAATTAAGATTTATCTTTTAATATTT
*
11676962 TTT-TTTTTCAAAATTTCGATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTA
1 TTTATTTTTCAAAATTTTGATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTA
* * *
11677026 ATTATTATCAAGATTTTGAGTTAAGATTTATCATTTAA-ATTT
66 ATTATTATCAAGAGTTTGAATTAAGATTTATCTTTTAATATTT
* *
11677068 TTTATTTTTCAAAATTTTGATAGTTCTTAATATTAATTATAAATTAAATTTTATAATTTATACTA
1 TTTATTTTTCAAAATTTTGATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTA
* * *
11677133 ATTATTATCAAAAGTTTGAATTAGGATTTGT-TTTTAATATTT
66 ATTATTATCAAGAGTTTGAATTAAGATTTATCTTTTAATATTT
11677175 T
1 T
11677176 GAATTTAAAT
Statistics
Matches: 191, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
103 1 0.01
104 69 0.36
105 24 0.13
106 8 0.04
107 89 0.47
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (108 bp):
TTTATTTTTCAAAATTTTGATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTA
ATTATTATCAAGAGTTTGAATTAAGATTTATCTTTTAATATTT
Found at i:11678626 original size:18 final size:18
Alignment explanation
Indices: 11678603--11678643 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
11678593 TTCTGTTAAA
**
11678603 GAAGAAGAAGATCTTGAG
1 GAAGAAGAAGATCCCGAG
11678621 GAAGAAGAAGATCCCGAG
1 GAAGAAGAAGATCCCGAG
11678639 GAAGA
1 GAAGA
11678644 TCTTGTGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.34, T:0.10
Consensus pattern (18 bp):
GAAGAAGAAGATCCCGAG
Found at i:11688761 original size:21 final size:21
Alignment explanation
Indices: 11688689--11688744 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
11688679 GTCCAGATTA
*
11688689 CTACCGATACAAGTGGCAGTT
1 CTACCGATACAAGTGACAGTT
11688710 CTACCGATACAAGTGACAGTT
1 CTACCGATACAAGTGACAGTT
*
11688731 CAACCGATACAAGT
1 CTACCGATACAAGT
11688745 CTTACTTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (21 bp):
CTACCGATACAAGTGACAGTT
Found at i:11689481 original size:41 final size:41
Alignment explanation
Indices: 11689412--11689589 Score: 277
Period size: 41 Copynumber: 4.4 Consensus size: 41
11689402 CAAGTCATGT
* *
11689412 GTCTTCCTTTTTAA-CAATCTTATGCTCTATTAAGTCATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCAAGTAATAA
* *
11689452 GACTTCCTTTGTAATCAATCTTATGCTCTATCAAGTAATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCAAGTAATAA
* *
11689493 GTCTTCATTTTTAATCAATCTTATGCTCTATCGAGTAATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCAAGTAATAA
* *
11689534 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCAAGTAATAA
11689575 GTCTTCCTTTTTAAT
1 GTCTTCCTTTTTAAT
11689590 AACAAACCTC
Statistics
Matches: 127, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 12 0.09
41 115 0.91
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (41 bp):
GTCTTCCTTTTTAATCAATCTTATGCTCTATCAAGTAATAA
Found at i:11689708 original size:43 final size:42
Alignment explanation
Indices: 11689533--11689717 Score: 160
Period size: 41 Copynumber: 4.4 Consensus size: 42
11689523 TCGAGTAATA
* * * * *
11689533 AGTCTTCCTTTT-TAATCAATCTTATGCTCTA-TCGAGTCATA
1 AGTCTTCCTTTTATAA-AAATCTCATGCTCAACTCGAGACATG
* *
11689574 AGTCTTCCTTTTTAATAACAAACCTCATGCTCAATTCGAGACATG
1 AGTCTTCC-TTTT-ATAA-AAATCTCATGCTCAACTCGAGACATG
* * * * *
11689619 AGTCTTCCTTTAAT-ATAATCTCATTCTCATCCCGAGACATG
1 AGTCTTCCTTTTATAAAAATCTCATGCTCAACTCGAGACATG
* * *
11689660 GGTCTTCCTTTTATAAAAATTCTCATGCTCAACTCAAGGCATG
1 AGTCTTCCTTTTATAAAAA-TCTCATGCTCAACTCGAGACATG
*
11689703 AGTCTTCCATTTATA
1 AGTCTTCCTTTTATA
11689718 CATCTAGTTT
Statistics
Matches: 114, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
41 40 0.35
42 8 0.07
43 33 0.29
44 17 0.15
45 16 0.14
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.38
Consensus pattern (42 bp):
AGTCTTCCTTTTATAAAAATCTCATGCTCAACTCGAGACATG
Found at i:11697557 original size:191 final size:191
Alignment explanation
Indices: 11697233--11697611 Score: 758
Period size: 191 Copynumber: 2.0 Consensus size: 191
11697223 TCTTGGATAG
11697233 TGTGATGTCTTCGAGGTAATCCCATCTTCAACCAGCCAAAATGAAATATACAAAACAGCAACAAT
1 TGTGATGTCTTCGAGGTAATCCCATCTTCAACCAGCCAAAATGAAATATACAAAACAGCAACAAT
11697298 ACACAGGTAAGCTTTCTAGCTTAGTAAGTTCGCAAATAGGATGTCACTGCTTATCATTAAGCATA
66 ACACAGGTAAGCTTTCTAGCTTAGTAAGTTCGCAAATAGGATGTCACTGCTTATCATTAAGCATA
11697363 GTGATGACAGTTAACATTAGAGTCGTAAAACTTCCTCTTTGATTGATCTCAACTGCACGAA
131 GTGATGACAGTTAACATTAGAGTCGTAAAACTTCCTCTTTGATTGATCTCAACTGCACGAA
11697424 TGTGATGTCTTCGAGGTAATCCCATCTTCAACCAGCCAAAATGAAATATACAAAACAGCAACAAT
1 TGTGATGTCTTCGAGGTAATCCCATCTTCAACCAGCCAAAATGAAATATACAAAACAGCAACAAT
11697489 ACACAGGTAAGCTTTCTAGCTTAGTAAGTTCGCAAATAGGATGTCACTGCTTATCATTAAGCATA
66 ACACAGGTAAGCTTTCTAGCTTAGTAAGTTCGCAAATAGGATGTCACTGCTTATCATTAAGCATA
11697554 GTGATGACAGTTAACATTAGAGTCGTAAAACTTCCTCTTTGATTGATCTCAACTGCAC
131 GTGATGACAGTTAACATTAGAGTCGTAAAACTTCCTCTTTGATTGATCTCAACTGCAC
11697612 AGGTCATGTG
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 188 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (191 bp):
TGTGATGTCTTCGAGGTAATCCCATCTTCAACCAGCCAAAATGAAATATACAAAACAGCAACAAT
ACACAGGTAAGCTTTCTAGCTTAGTAAGTTCGCAAATAGGATGTCACTGCTTATCATTAAGCATA
GTGATGACAGTTAACATTAGAGTCGTAAAACTTCCTCTTTGATTGATCTCAACTGCACGAA
Found at i:11697696 original size:41 final size:41
Alignment explanation
Indices: 11697621--11697799 Score: 279
Period size: 41 Copynumber: 4.4 Consensus size: 41
11697611 CAGGTCATGT
* *
11697621 GTCTTCCTTTTTAA-AAATCTTATGCTCTACCGAGTCATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
* *
11697661 GTCTTCCTTTTTAATCAATCTTATGCTTTATCGAGTTATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
*
11697702 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTAATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
* *
11697743 GTCTTCCTTTTTAGTCAATCTTACGCTCTATCGAGTCATAA
1 GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
11697784 GGTCTTCCTTTTTAAT
1 -GTCTTCCTTTTTAAT
11697800 AACAAAACAC
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 14 0.11
41 99 0.78
42 14 0.11
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.45
Consensus pattern (41 bp):
GTCTTCCTTTTTAATCAATCTTATGCTCTATCGAGTCATAA
Found at i:11703266 original size:18 final size:18
Alignment explanation
Indices: 11703238--11703280 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
11703228 TTATCCAAAC
11703238 ATTACAAGTCTT-AAAATAA
1 ATTA-AAGTCTTGAAAA-AA
11703257 ATTAAAGTCTTGAAAAAA
1 ATTAAAGTCTTGAAAAAA
11703275 ATTAAA
1 ATTAAA
11703281 TTTTAATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (18 bp):
ATTAAAGTCTTGAAAAAA
Found at i:11704639 original size:18 final size:18
Alignment explanation
Indices: 11704616--11704653 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
11704606 AGCACGCCAT
11704616 TACTTATTCATTTAGAGA
1 TACTTATTCATTTAGAGA
11704634 TACTTATTCATTTAGAGA
1 TACTTATTCATTTAGAGA
11704652 TA
1 TA
11704654 TTTTGTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (18 bp):
TACTTATTCATTTAGAGA
Found at i:11723252 original size:15 final size:15
Alignment explanation
Indices: 11723226--11723266 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
11723216 CTAAAAAAAT
*
11723226 ATTTTTCTTTTTACAA
1 ATTTTTCTTTTAAC-A
11723242 ATTTTTCTTTTAACA
1 ATTTTTCTTTTAACA
*
11723257 TTTTTTCTTT
1 ATTTTTCTTT
11723267 CTTTTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTCTTTTAACA
Found at i:11724152 original size:15 final size:15
Alignment explanation
Indices: 11724129--11724160 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
11724119 ATTCTATTAT
*
11724129 TCTTTTTCTTCCTTC
1 TCTTCTTCTTCCTTC
11724144 TCTTCTTCTTCCTTC
1 TCTTCTTCTTCCTTC
11724159 TC
1 TC
11724161 CTTTTACTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTTCTTCTTCCTTC
Found at i:11734461 original size:34 final size:35
Alignment explanation
Indices: 11734423--11734499 Score: 120
Period size: 34 Copynumber: 2.2 Consensus size: 35
11734413 GCTCAAAAGA
*
11734423 CATGTCTCTTCATTTATCTTTGAGTAGATG-AGGG
1 CATGTCTCTTCATTTATCTTAGAGTAGATGAAGGG
*
11734457 CATGTCTCTTCATTTTTCTTAGAGTAGATGAAAGGG
1 CATGTCTCTTCATTTATCTTAGAGTAGATG-AAGGG
11734493 CATGTCT
1 CATGTCT
11734500 TTGAGTAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
34 28 0.72
36 11 0.28
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (35 bp):
CATGTCTCTTCATTTATCTTAGAGTAGATGAAGGG
Found at i:11734505 original size:24 final size:24
Alignment explanation
Indices: 11734473--11734525 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
11734463 TCTTCATTTT
*
11734473 TCTTAGAGTAGATGAAAGGGCATG
1 TCTTTGAGTAGATGAAAGGGCATG
11734497 TCTTTGAGTAGATGAAAGGGCATG
1 TCTTTGAGTAGATGAAAGGGCATG
11734521 TCTTT
1 TCTTT
11734526 TCATTAGTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.32
Consensus pattern (24 bp):
TCTTTGAGTAGATGAAAGGGCATG
Found at i:11734943 original size:17 final size:18
Alignment explanation
Indices: 11734921--11734961 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
11734911 AGTCAAATTA
11734921 AATAACAC-A-CATATTT
1 AATAACACAAGCATATTT
*
11734937 AACTAACTCAAGCATATTT
1 AA-TAACACAAGCATATTT
11734956 AATAAC
1 AATAAC
11734962 TAAGATGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 5 0.24
18 5 0.24
19 9 0.43
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAACACAAGCATATTT
Found at i:11735135 original size:50 final size:52
Alignment explanation
Indices: 11735022--11735140 Score: 154
Period size: 50 Copynumber: 2.3 Consensus size: 52
11735012 TTACTAAATG
* *
11735022 CATGACTTGT-TTTAATGATGCAAACTTAACTAATCATGAGAGTTACATAATG
1 CATGACTT-TATTTAATGATGCAAACTTAACTAATCATGAAAGTTACATAATA
* * *
11735074 CATGTCATTATTT-ATGATGCATACTTAACTAA-CATGAAAGTTACATAATA
1 CATGACTTTATTTAATGATGCAAACTTAACTAATCATGAAAGTTACATAATA
*
11735124 CATGACTTTATTAAATG
1 CATGACTTTATTTAATG
11735141 CAGAACACAT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
50 26 0.46
51 22 0.39
52 9 0.16
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (52 bp):
CATGACTTTATTTAATGATGCAAACTTAACTAATCATGAAAGTTACATAATA
Found at i:11737212 original size:23 final size:23
Alignment explanation
Indices: 11737172--11737711 Score: 679
Period size: 23 Copynumber: 23.5 Consensus size: 23
11737162 TGTATCTATC
* *
11737172 CTTAAATATTATTGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
* * *
11737195 CTTAAATGTTAATATGATTTATG
1 CTTAAATATTAATGTGATTTGTG
* *
11737218 CTTAAATATTAATTTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
* * * **
11737241 CTTGAATGTTAATATGATTTACG
1 CTTAAATATTAATGTGATTTGTG
*
11737264 CTTAAATATTAATGAGATTTGT-
1 CTTAAATATTAATGTGATTTGTG
11737286 CTTAAATATTAATGTGATTTGAT-
1 CTTAAATATTAATGTGATTTG-TG
* *
11737309 CTTAAATATTAATATGATTTGTT
1 CTTAAATATTAATGTGATTTGTG
11737332 CTTAAATATTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
*
11737355 CTTAAATATTAATATGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
* *
11737378 CTTAAATATTAATATGATTTGTA
1 CTTAAATATTAATGTGATTTGTG
* *
11737401 CTCAAATATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
11737424 CTTAAATATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
* *
11737447 TTTAAATATTAATATGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
* * *
11737470 CTCAAATATTAATCTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
11737493 CTTAAATATTAGTGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
*
11737516 CTTAAATATTAATGTGATTTGTA
1 CTTAAATATTAATGTGATTTGTG
* * * *
11737539 CTTAAGTGTTGATGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
11737562 CTTAAATATTAATATGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
*
11737585 CTCAAATATTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
**
11737608 CTTAAATATTAATAAGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
* * *
11737631 CTCAAATATTAACGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
11737654 CTTAAATATTAATATGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
*
11737677 CTTAAATATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
11737700 CTCAAATATTAA
1 CTTAAATATTAA
11737712 GATTTGATAT
Statistics
Matches: 449, Mismatches: 66, Indels: 4
0.87 0.13 0.01
Matches are distributed among these distances:
22 21 0.05
23 428 0.95
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.47
Consensus pattern (23 bp):
CTTAAATATTAATGTGATTTGTG
Found at i:11739374 original size:7 final size:7
Alignment explanation
Indices: 11739362--11739386 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11739352 ACTCATTTAA
11739362 AATATTT
1 AATATTT
11739369 AATATTT
1 AATATTT
11739376 AATATTT
1 AATATTT
11739383 AATA
1 AATA
11739387 AATTTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
AATATTT
Found at i:11739717 original size:20 final size:18
Alignment explanation
Indices: 11739692--11739763 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 18
11739682 TTTTGGTGCT
11739692 TTTTTTTACTGTTTTGATTG
1 TTTTTTTACTGTTTTG--TG
**
11739712 TTTTTTTGTTGTTTTG-G
1 TTTTTTTACTGTTTTGTG
11739729 TTTTTTGTACTGTTTTGGTG
1 TTTTTT-TACTGTTTT-GTG
*
11739749 CTTTTTT-CTGTTTTG
1 TTTTTTTACTGTTTTG
11739764 GTGCTATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
17 8 0.18
18 14 0.32
19 2 0.05
20 20 0.45
ACGTcount: A:0.04, C:0.06, G:0.19, T:0.71
Consensus pattern (18 bp):
TTTTTTTACTGTTTTGTG
Found at i:11739733 original size:18 final size:19
Alignment explanation
Indices: 11739676--11739780 Score: 81
Period size: 18 Copynumber: 5.4 Consensus size: 19
11739666 AAAAAATATA
11739676 TTGTTGTTTTGGTGCTTTTT
1 TTGTTGTTTTGGTG-TTTTT
*
11739696 TT-TACTGTTTTGATTGTTTTT
1 TTGT--TGTTTTG-GTGTTTTT
11739717 TTGTTGTTTTGGT-TTTTT
1 TTGTTGTTTTGGTGTTTTT
* ** *
11739735 GTACTGTTTTGGTGCTTTT
1 TTGTTGTTTTGGTGTTTTT
* *
11739754 TT-CTGTTTTGGTGCTATTT
1 TTGTTGTTTTGGTG-TTTTT
11739773 TTGTTGTT
1 TTGTTGTT
11739781 ATTTTTGTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
18 26 0.38
19 12 0.18
20 13 0.19
21 14 0.21
22 3 0.04
ACGTcount: A:0.04, C:0.06, G:0.22, T:0.69
Consensus pattern (19 bp):
TTGTTGTTTTGGTGTTTTT
Found at i:11739754 original size:38 final size:41
Alignment explanation
Indices: 11739676--11739776 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 41
11739666 AAAAAATATA
* *
11739676 TTGTTGTTTTGGTGCTTTTTTTTACTGTTTTGATTGTTTTT
1 TTGTTGTTTTGGTGCTTTTTTGTACTGTTTTGAGTGTTTTT
*
11739717 TTGTTGTTTT-G-G-TTTTTTGTACTGTTTTG-GTGCTTTT
1 TTGTTGTTTTGGTGCTTTTTTGTACTGTTTTGAGTGTTTTT
*
11739754 TT-CTGTTTTGGTGCTATTTTTGT
1 TTGTTGTTTTGGTGCT-TTTTTGT
11739777 TGTTATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
36 6 0.12
37 9 0.17
38 17 0.33
39 2 0.04
40 8 0.15
41 10 0.19
ACGTcount: A:0.04, C:0.06, G:0.22, T:0.68
Consensus pattern (41 bp):
TTGTTGTTTTGGTGCTTTTTTGTACTGTTTTGAGTGTTTTT
Found at i:11739773 original size:11 final size:12
Alignment explanation
Indices: 11739759--11739801 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
11739749 CTTTTTTCTG
*
11739759 TTTTGGTGCTAT
1 TTTTGTTGCTAT
*
11739771 TTTTGTTGTTAT
1 TTTTGTTGCTAT
11739783 TTTTGTTGCTAT
1 TTTTGTTGCTAT
11739795 TTTTGTT
1 TTTTGTT
11739802 TTTTTGTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.07, C:0.05, G:0.19, T:0.70
Consensus pattern (12 bp):
TTTTGTTGCTAT
Found at i:11739783 original size:12 final size:12
Alignment explanation
Indices: 11739768--11739852 Score: 72
Period size: 12 Copynumber: 7.5 Consensus size: 12
11739758 GTTTTGGTGC
11739768 TATTTTTGTTGT
1 TATTTTTGTTGT
*
11739780 TATTTTTGTTGC
1 TATTTTTGTTGT
11739792 TA--TTT-TTGT
1 TATTTTTGTTGT
11739801 T-TTTTTGTTGT
1 TATTTTTGTTGT
* * *
11739812 T-GTTTTGGTAT
1 TATTTTTGTTGT
*
11739823 TATTTTTGTTGC
1 TATTTTTGTTGT
* *
11739835 TGTTTTGGTTGT
1 TATTTTTGTTGT
11739847 TATTTT
1 TATTTT
11739853 GATTGTTTGG
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
9 4 0.07
10 6 0.11
11 13 0.23
12 33 0.59
ACGTcount: A:0.07, C:0.02, G:0.19, T:0.72
Consensus pattern (12 bp):
TATTTTTGTTGT
Found at i:11739853 original size:12 final size:12
Alignment explanation
Indices: 11739759--11739859 Score: 61
Period size: 12 Copynumber: 8.9 Consensus size: 12
11739749 CTTTTTTCTG
*
11739759 TTTTGG-TGCTA
1 TTTTGGTTGTTA
*
11739770 TTTTTGTTGTTA
1 TTTTGGTTGTTA
* *
11739782 TTTTTGTTGCTA
1 TTTTGGTTGTTA
11739794 -TTT--TTGTT-
1 TTTTGGTTGTTA
* *
11739802 TTTTTGTTGTTG
1 TTTTGGTTGTTA
*
11739814 TTTTGG-TATTA
1 TTTTGGTTGTTA
* * *
11739825 TTTTTGTTGCTG
1 TTTTGGTTGTTA
11739837 TTTTGGTTGTTA
1 TTTTGGTTGTTA
*
11739849 TTTTGATTGTT
1 TTTTGGTTGTT
11739860 TGGATGATAT
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
9 7 0.10
11 21 0.30
12 41 0.59
ACGTcount: A:0.07, C:0.03, G:0.21, T:0.69
Consensus pattern (12 bp):
TTTTGGTTGTTA
Found at i:11740004 original size:26 final size:27
Alignment explanation
Indices: 11739969--11740035 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
11739959 TTTTTTTGCA
*
11739969 ATTATCTTAATATAAAGATTTTTTAAT
1 ATTATTTTAATATAAAGATTTTTTAAT
****
11739996 A-TATTTTAATATTTTTATTTTTTAAT
1 ATTATTTTAATATAAAGATTTTTTAAT
11740022 ATTTATTTTAATAT
1 A-TTATTTTAATAT
11740036 TTTTAAGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 21 0.64
27 1 0.03
28 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (27 bp):
ATTATTTTAATATAAAGATTTTTTAAT
Found at i:11740016 original size:14 final size:14
Alignment explanation
Indices: 11739997--11740040 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
11739987 TTTTTTAATA
11739997 TATTTTAATATTTT
1 TATTTTAATATTTT
11740011 TATTTTTTAATA--TT
1 TA--TTTTAATATTTT
11740025 TATTTTAATATTTT
1 TATTTTAATATTTT
11740039 TA
1 TA
11740041 AGTGTATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 8 0.31
14 10 0.38
16 8 0.31
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTTTAATATTTT
Found at i:11740018 original size:28 final size:27
Alignment explanation
Indices: 11739986--11740040 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 27
11739976 TAATATAAAG
11739986 ATTTTTTAATA-TATTTTAATATTTTT
1 ATTTTTTAATATTATTTTAATATTTTT
11740012 ATTTTTTAATATTTATTTTAATATTTTT
1 ATTTTTTAATA-TTATTTTAATATTTTT
11740040 A
1 A
11740041 AGTGTATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 11 0.41
28 16 0.59
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (27 bp):
ATTTTTTAATATTATTTTAATATTTTT
Found at i:11747637 original size:30 final size:30
Alignment explanation
Indices: 11747603--11747662 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
11747593 TGTCATGTAC
*
11747603 TAGATTTCCTA-CACTAAGGCTCACATATAA
1 TAGA-TTCCTACCACTAAGGCGCACATATAA
*
11747633 TAGATTCCTACCACTAGGGCGCACATATAA
1 TAGATTCCTACCACTAAGGCGCACATATAA
11747663 CAGAGAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (30 bp):
TAGATTCCTACCACTAAGGCGCACATATAA
Found at i:11747746 original size:28 final size:27
Alignment explanation
Indices: 11747702--11747798 Score: 88
Period size: 28 Copynumber: 3.5 Consensus size: 27
11747692 TCAAGTTCCC
*
11747702 ACCACAAA-GCTTACACATAACAAATCA
1 ACCACAAAGGCTTCCACATAACAAA-CA
* *
11747729 ACCAAAAAGGCTTCCACATATCAGAACA
1 ACCACAAAGGCTTCCACATAACA-AACA
* * *
11747757 GCCACAAAGGCTTTCGCATAACAAAACA
1 ACCACAAAGGCTTCCACATAAC-AAACA
* *
11747785 GCCATAAAGGCTTC
1 ACCACAAAGGCTTC
11747799 AATATAGAGG
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 7 0.12
28 47 0.82
29 3 0.05
ACGTcount: A:0.44, C:0.29, G:0.11, T:0.15
Consensus pattern (27 bp):
ACCACAAAGGCTTCCACATAACAAACA
Found at i:11756950 original size:24 final size:24
Alignment explanation
Indices: 11756923--11756973 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
11756913 AACATACAAT
*
11756923 ATAATCATA-ACAAAAATAAGTAAA
1 ATAATCATATA-AAAAATAAATAAA
**
11756947 ATAATTGTATAAAAAATAAATAAA
1 ATAATCATATAAAAAATAAATAAA
11756971 ATA
1 ATA
11756974 GAGTACATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (24 bp):
ATAATCATATAAAAAATAAATAAA
Found at i:11757257 original size:22 final size:23
Alignment explanation
Indices: 11757216--11757259 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
11757206 AATATAAATA
*
11757216 AGAAAAAACATAAAATAAATAAT
1 AGAAAAAACATAAAAAAAATAAT
*
11757239 AGAAAGAA-ATAAAAAAAATAA
1 AGAAAAAACATAAAAAAAATAA
11757260 AACATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (23 bp):
AGAAAAAACATAAAAAAAATAAT
Found at i:11757272 original size:17 final size:18
Alignment explanation
Indices: 11757201--11757271 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
11757191 TAAAACAGGC
11757201 ATAAAA-ATATAAATAAGA
1 ATAAAACATATAAA-AAGA
* *
11757219 A-AAAACATAAAATAAATA
1 ATAAAACATATAA-AAAGA
* * *
11757237 ATAGAAAGAAATAAAAAAA
1 ATA-AAACATATAAAAAGA
11757256 ATAAAACATATAAAAA
1 ATAAAACATATAAAAA
11757272 AGGACTGAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
17 4 0.10
18 21 0.51
19 9 0.22
20 7 0.17
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (18 bp):
ATAAAACATATAAAAAGA
Found at i:11757926 original size:18 final size:19
Alignment explanation
Indices: 11757903--11757956 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 19
11757893 TTTATTATTT
11757903 AGAAAAAGAAAA-AAAAGA
1 AGAAAAAGAAAAGAAAAGA
* *
11757921 AGAAAATTGGAAAAGAGAAGA
1 AGAAAA--AGAAAAGAAAAGA
*
11757942 AGAAAAAGATAAGAA
1 AGAAAAAGAAAAGAA
11757957 TATGTTTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 6 0.21
19 6 0.21
20 5 0.18
21 11 0.39
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (19 bp):
AGAAAAAGAAAAGAAAAGA
Found at i:11758130 original size:12 final size:12
Alignment explanation
Indices: 11758113--11758138 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11758103 CCAATTCTTC
11758113 TAGCCTTTTCCA
1 TAGCCTTTTCCA
11758125 TAGCCTTTTCCA
1 TAGCCTTTTCCA
11758137 TA
1 TA
11758139 CCATTAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.31, G:0.08, T:0.42
Consensus pattern (12 bp):
TAGCCTTTTCCA
Found at i:11761063 original size:28 final size:26
Alignment explanation
Indices: 11761028--11761084 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 26
11761018 ATTTAGCCAC
*
11761028 TTTTATTT-TTATTTTCATATTTTTTGT
1 TTTTATTTATT-TTTACAT-TTTTTTGT
11761055 TTTTAATTTAATTTTTACATTTTTTTGT
1 TTTT-ATTT-ATTTTTACATTTTTTTGT
11761083 TT
1 TT
11761085 ATAGGTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 4 0.15
28 14 0.54
29 6 0.23
30 2 0.08
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (26 bp):
TTTTATTTATTTTTACATTTTTTTGT
Found at i:11763191 original size:10 final size:10
Alignment explanation
Indices: 11763176--11763208 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11763166 CATGTTTTTG
11763176 AAAAAAATGA
1 AAAAAAATGA
11763186 AAAAAAAT-A
1 AAAAAAATGA
11763195 AAAAAAATTGA
1 AAAAAAA-TGA
11763206 AAA
1 AAA
11763209 TTTTTGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.38
10 9 0.43
11 4 0.19
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:11763252 original size:6 final size:6
Alignment explanation
Indices: 11763241--11763273 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
11763231 TAGTATATTT
11763241 ATTTTC ATTTTC ATTTTC ATTTT- ATTTT- ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
11763274 AATTATGCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 10 0.37
6 17 0.63
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (6 bp):
ATTTTC
Found at i:11763258 original size:12 final size:11
Alignment explanation
Indices: 11763238--11763274 Score: 58
Period size: 12 Copynumber: 3.4 Consensus size: 11
11763228 AAATAGTATA
11763238 TTTATTTTCAT
1 TTTATTTTCAT
11763249 TTTCATTTTCAT
1 TTT-ATTTTCAT
11763261 TTTATTTT-AT
1 TTTATTTTCAT
11763271 TTTA
1 TTTA
11763275 ATTATGCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 6 0.24
11 8 0.32
12 11 0.44
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTATTTTCAT
Found at i:11764217 original size:16 final size:17
Alignment explanation
Indices: 11764196--11764229 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11764186 TTTATTATTT
11764196 AGAAAAA-GAAAAAAAA
1 AGAAAAATGAAAAAAAA
11764212 AGAAAAATTGAAAAAAAA
1 AGAAAAA-TGAAAAAAAA
11764230 TTGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (17 bp):
AGAAAAATGAAAAAAAA
Found at i:11764228 original size:11 final size:11
Alignment explanation
Indices: 11764214--11764239 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11764204 AAAAAAAAAG
11764214 AAAAATTGAAA
1 AAAAATTGAAA
11764225 AAAAATTGAAA
1 AAAAATTGAAA
11764236 AAAA
1 AAAA
11764240 GGAAAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAATTGAAA
Found at i:11764237 original size:20 final size:20
Alignment explanation
Indices: 11764221--11764258 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11764211 AAGAAAAATT
*
11764221 GAAAAAAAATTGAAAAAAAG
1 GAAAAAAAATGGAAAAAAAG
*
11764241 GAAAACAAATGGAAAAAA
1 GAAAAAAAATGGAAAAAA
11764259 GAAGAAGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.16, T:0.08
Consensus pattern (20 bp):
GAAAAAAAATGGAAAAAAAG
Found at i:11766374 original size:12 final size:13
Alignment explanation
Indices: 11766357--11766387 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
11766347 ATACTTCTTT
11766357 ATTTTTA-ATTTA
1 ATTTTTACATTTA
11766369 ATTTTTACATTTA
1 ATTTTTACATTTA
11766382 ATTTTT
1 ATTTTT
11766388 TTTATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTTACATTTA
Found at i:11769632 original size:24 final size:24
Alignment explanation
Indices: 11769600--11769655 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
11769590 TGTATGGGTA
11769600 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCATTTTCATTT
* *
11769624 TCTTCTTGTTTTTCTTTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
11769648 TCCTCTTG
1 TCTTCTTG
11769656 AGAACTCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCATTT
Found at i:11769636 original size:12 final size:12
Alignment explanation
Indices: 11769600--11769655 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
11769590 TGTATGGGTA
11769600 TCTTCTTGTTTT
1 TCTTCTTGTTTT
**
11769612 TCATT-TTCATTT
1 TC-TTCTTGTTTT
11769624 TCTTCTTGTTTT
1 TCTTCTTGTTTT
* *
11769636 TCTTTTTCTTTT
1 TCTTCTTGTTTT
*
11769648 TCCTCTTG
1 TCTTCTTG
11769656 AGAACTCTCC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
11 2 0.06
12 29 0.88
13 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (12 bp):
TCTTCTTGTTTT
Found at i:11771270 original size:17 final size:18
Alignment explanation
Indices: 11771238--11771281 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
11771228 ACCCAGAGAA
11771238 TATTTTT-T-TTATTTTT
1 TATTTTTCTCTTATTTTT
11771254 TATTTTTCTCTTA-TTTT
1 TATTTTTCTCTTATTTTT
*
11771271 TCTTTTTCTCT
1 TATTTTTCTCT
11771282 ACTTTTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 7 0.28
17 15 0.60
18 3 0.12
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (18 bp):
TATTTTTCTCTTATTTTT
Found at i:11773627 original size:9 final size:9
Alignment explanation
Indices: 11773613--11773663 Score: 70
Period size: 10 Copynumber: 5.7 Consensus size: 9
11773603 TCATTTTTTT
11773613 AAAAAATTC
1 AAAAAATTC
11773622 AAAAAAATTC
1 -AAAAAATTC
11773632 AAAAAAATTC
1 -AAAAAATTC
11773642 AAAAAATTC
1 AAAAAATTC
11773651 -AAAAATT-
1 AAAAAATTC
11773658 AAAAAA
1 AAAAAA
11773664 AAATTAGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 12 0.30
9 9 0.22
10 19 0.47
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAAAATTC
Found at i:11773628 original size:10 final size:10
Alignment explanation
Indices: 11773613--11773655 Score: 79
Period size: 10 Copynumber: 4.4 Consensus size: 10
11773603 TCATTTTTTT
11773613 AAAAAATTCA
1 AAAAAATTCA
11773623 AAAAAATTCA
1 AAAAAATTCA
11773633 AAAAAATTC-
1 AAAAAATTCA
11773642 AAAAAATTCA
1 AAAAAATTCA
11773652 AAAA
1 AAAA
11773656 TTAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 9 0.28
10 23 0.72
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAAATTCA
Found at i:11773637 original size:19 final size:20
Alignment explanation
Indices: 11773613--11773655 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
11773603 TCATTTTTTT
11773613 AAAAAATTCAAAAAAATTCA
1 AAAAAATTCAAAAAAATTCA
11773633 AAAAAATTC-AAAAAATTCA
1 AAAAAATTCAAAAAAATTCA
11773652 AAAA
1 AAAA
11773656 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAAAATTCAAAAAAATTCA
Found at i:11773701 original size:6 final size:6
Alignment explanation
Indices: 11773675--11773730 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
11773665 AATTAGTATA
* * * * *
11773675 TTTATT TTCATT TTCATT TTTATT TTTAGT TTTAGT TTTATA TTT-TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
11773722 TTTATT TTT
1 TTTATT TTT
11773731 TTTCTAATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:11774707 original size:18 final size:18
Alignment explanation
Indices: 11774660--11774720 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
11774650 TATTATTTAG
* *
11774660 AAAAATAAAAAAAAGAAA
1 AAAAATGAAAAAATGAAA
* * * *
11774678 AAAATTCCAAAAATTTAAA
1 AAAAAT-GAAAAAATGAAA
11774697 AAAAATGAAAAAATGAAA
1 AAAAATGAAAAAATGAAA
11774715 AAAAAT
1 AAAAAT
11774721 AAGAAGAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
18 20 0.61
19 13 0.39
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAAATGAAAAAATGAAA
Found at i:11776884 original size:12 final size:13
Alignment explanation
Indices: 11776867--11776896 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
11776857 ATATTTTTTG
11776867 TTTTTA-ATTTAA
1 TTTTTACATTTAA
11776879 TTTTTACATTTAA
1 TTTTTACATTTAA
11776892 TTTTT
1 TTTTT
11776897 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTACATTTAA
Found at i:11778768 original size:17 final size:17
Alignment explanation
Indices: 11778749--11778782 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11778739 TAGTATATTA
*
11778749 TTTTCATTTTCATTTTAT
1 TTTTAATTTT-ATTTTAT
11778767 TTTTAATTTTATTTTA
1 TTTTAATTTTATTTTA
11778783 ATTATGCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTAATTTTATTTTAT
Found at i:11779725 original size:11 final size:11
Alignment explanation
Indices: 11779709--11779755 Score: 57
Period size: 10 Copynumber: 4.6 Consensus size: 11
11779699 TTTAGAAAAA
11779709 GAAAAAAATTC
1 GAAAAAAATTC
11779720 G-AAAAAATT-
1 GAAAAAAATTC
*
11779729 GAAAAAAA--A
1 GAAAAAAATTC
11779738 GAAAAAAATTC
1 GAAAAAAATTC
11779749 GAAAAAA
1 GAAAAAA
11779756 GAAGAAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
9 9 0.29
10 14 0.45
11 8 0.26
ACGTcount: A:0.72, C:0.04, G:0.11, T:0.13
Consensus pattern (11 bp):
GAAAAAAATTC
Found at i:11782113 original size:12 final size:11
Alignment explanation
Indices: 11782067--11782117 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
11782057 CGATCTCTCA
*
11782067 TTTCTTTTTCTT
1 TTTCTTTTT-TC
11782079 TTTCTTTTTT-
1 TTTCTTTTTTC
11782089 TTTCACTTTTTTC
1 TTT--CTTTTTTC
11782102 TTTCTTTATTTC
1 TTTCTTT-TTTC
11782114 TTTC
1 TTTC
11782118 CTCCTCTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.09
11 5 0.14
12 24 0.69
13 3 0.09
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:11782117 original size:25 final size:24
Alignment explanation
Indices: 11782070--11782117 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
11782060 TCTCTCATTT
*
11782070 CTTTTTCTTTTTCTTTTTTTTTCA
1 CTTTTTCTCTTTCTTTTTTTTTCA
11782094 CTTTTT-TCTTTCTTTATTTCTTTC
1 CTTTTTCTCTTTCTTT-TTT-TTTC
11782118 CTCCTCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 9 0.43
25 4 0.19
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (24 bp):
CTTTTTCTCTTTCTTTTTTTTTCA
Found at i:11784110 original size:13 final size:13
Alignment explanation
Indices: 11784081--11784122 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
11784071 GAGCATGCAA
*
11784081 AAAACATATCCTT-
1 AAAACATA-ACTTG
11784094 AAAACATAACTTG
1 AAAACATAACTTG
*
11784107 AAAACCTAACTTG
1 AAAACATAACTTG
11784120 AAA
1 AAA
11784123 CTAGAGTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 3 0.12
13 23 0.88
ACGTcount: A:0.52, C:0.19, G:0.05, T:0.24
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:11787559 original size:28 final size:28
Alignment explanation
Indices: 11787518--11787584 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
11787508 CTATGGGAAA
* * *
11787518 GCTTTTGTGGCAATCTCTATTATGGACT
1 GCTTTTGTGTCAATATCTATTAAGGACT
11787546 GCTTTTGTGTCAATATCTATTAAGGACT
1 GCTTTTGTGTCAATATCTATTAAGGACT
*
11787574 ACTTTTGTGTC
1 GCTTTTGTGTC
11787585 GGAGATGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.45
Consensus pattern (28 bp):
GCTTTTGTGTCAATATCTATTAAGGACT
Found at i:11799733 original size:6 final size:6
Alignment explanation
Indices: 11799722--11799761 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
11799712 CGGTCAACGA
* * *
11799722 TCAAAG TCAAAG TTAAAG TCAAAA TCAAAA TCAAAG TCAA
1 TCAAAG TCAAAG TCAAAG TCAAAG TCAAAG TCAAAG TCAA
11799762 CGAGTCTGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.55, C:0.15, G:0.10, T:0.20
Consensus pattern (6 bp):
TCAAAG
Found at i:11804577 original size:5 final size:5
Alignment explanation
Indices: 11804567--11804617 Score: 66
Period size: 5 Copynumber: 10.0 Consensus size: 5
11804557 AGGTGCTTAT
* * *
11804567 GGGTC GGGTC GGATC GTGTTC GGTTC GGGTC GGGTC GGGTC GGGTC GGGTC
1 GGGTC GGGTC GGGTC G-GGTC GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
11804618 TAAGCCTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
5 38 0.90
6 4 0.10
ACGTcount: A:0.02, C:0.20, G:0.53, T:0.25
Consensus pattern (5 bp):
GGGTC
Found at i:11806651 original size:44 final size:44
Alignment explanation
Indices: 11806588--11806692 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 44
11806578 AAATAAGAAA
* *
11806588 GTTTAAATACAAAATGGAACCATCACAAGTTCCTAACTGAAGGT
1 GTTTAAATACAAAATGGAACCAGCACAAGTTCCAAACTGAAGGT
* * * *
11806632 GTTTAAGTACAAAATGGAACCCGCAGAAGTTCCAAACTGAATGTT
1 GTTTAAATACAAAATGGAACCAGCACAAGTTCCAAACTGAA-GGT
* *
11806677 CTTTGAATACAAAATG
1 GTTTAAATACAAAATG
11806693 TAACAGATCA
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 36 0.71
45 15 0.29
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (44 bp):
GTTTAAATACAAAATGGAACCAGCACAAGTTCCAAACTGAAGGT
Found at i:11809407 original size:18 final size:18
Alignment explanation
Indices: 11809384--11809421 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
11809374 AAACTAAAAT
*
11809384 CAAACCTCTTGTCTAATG
1 CAAACCTCTTGGCTAATG
11809402 CAAACCTCTTGGCTAATG
1 CAAACCTCTTGGCTAATG
11809420 CA
1 CA
11809422 TACTTATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (18 bp):
CAAACCTCTTGGCTAATG
Found at i:11809884 original size:27 final size:27
Alignment explanation
Indices: 11809843--11809898 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
11809833 ATCACTATCA
*
11809843 CTATCTCCCTTTGGAACAACTTCCTTC
1 CTATCTCCCTCTGGAACAACTTCCTTC
*
11809870 CTATCTCCCTCTGGAACAGCTTCCTTC
1 CTATCTCCCTCTGGAACAACTTCCTTC
11809897 CT
1 CT
11809899 TCCCTTTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.16, C:0.39, G:0.09, T:0.36
Consensus pattern (27 bp):
CTATCTCCCTCTGGAACAACTTCCTTC
Found at i:11811357 original size:27 final size:27
Alignment explanation
Indices: 11811295--11811347 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
11811285 TTAAAATCTC
*
11811295 AATTTTTTTAAACCTTCTCTTTTTTCA
1 AATTTTTTTAAACCTTCTCTTATTTCA
*
11811322 AAATTTTTTAAACCTTCTCTTATTTC
1 AATTTTTTTAAACCTTCTCTTATTTC
11811348 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.57
Consensus pattern (27 bp):
AATTTTTTTAAACCTTCTCTTATTTCA
Found at i:11811496 original size:133 final size:133
Alignment explanation
Indices: 11811323--11811562 Score: 376
Period size: 133 Copynumber: 1.8 Consensus size: 133
11811313 CTTTTTTCAA
* * **
11811323 AATTTTTTAAACCTTCTCTTATTTCTTTTTTTTTTGAAACCCTAAATA-ACA-ACTAATTTATTC
1 AATTTTTTAAACCTTCTCTTATTTATTCTTTTTTCAAAACCCTAAATAGA-AGA-TAATTTATTC
*
11811386 CTAAATTTTATGGATTTCAAGTTCTTCCAGCCACATGTTGTATATTGTTTTCAAGTTCTTGTCTT
64 CTAAATTTTACGGATTTCAAGTTCTTCCAGCCACATGTTGTATATTGTTTTCAAGTTCTTGTCTT
11811451 ATTTC
129 ATTTC
* *
11811456 AATTTTTTTAACCTTCTCTTATTTATTCTTTTTTCAAAACCCTAAATAGAAGATACTTTATTCCT
1 AATTTTTTAAACCTTCTCTTATTTATTCTTTTTTCAAAACCCTAAATAGAAGATAATTTATTCCT
*
11811521 AAATTTTACGGATTTCAAGTTCTTCCAGTCACATGTTGTATA
66 AAATTTTACGGATTTCAAGTTCTTCCAGCCACATGTTGTATA
11811563 GTATTTTCTA
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
133 95 0.98
134 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.48
Consensus pattern (133 bp):
AATTTTTTAAACCTTCTCTTATTTATTCTTTTTTCAAAACCCTAAATAGAAGATAATTTATTCCT
AAATTTTACGGATTTCAAGTTCTTCCAGCCACATGTTGTATATTGTTTTCAAGTTCTTGTCTTAT
TTC
Found at i:11813588 original size:28 final size:29
Alignment explanation
Indices: 11813531--11813588 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
11813521 TTTACTTTTT
* *
11813531 CCCCAAAACTTTTACTTCTTCCCACTTCC
1 CCCCAAAACATTTACTTCTTCCCACATCC
* *
11813560 CCCCAAAACATTTAC-TCTTCTCTCATCC
1 CCCCAAAACATTTACTTCTTCCCACATCC
11813588 C
1 C
11813589 ACCCCCATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.22, C:0.45, G:0.00, T:0.33
Consensus pattern (29 bp):
CCCCAAAACATTTACTTCTTCCCACATCC
Found at i:11814589 original size:20 final size:20
Alignment explanation
Indices: 11814552--11814591 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
11814542 ATGTGTTTAC
*
11814552 ATAATATATATATATATAAA
1 ATAATATAAATATATATAAA
11814572 ATAATATAAAGTAT-TATAAA
1 ATAATATAAA-TATATATAAA
11814592 CTTAAAACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
ATAATATAAATATATATAAA
Found at i:11816034 original size:20 final size:20
Alignment explanation
Indices: 11816001--11816049 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
11815991 TTAATCCTAG
**
11816001 GAATAATGGGATCAAGTCAT
1 GAATAATGAAATCAAGTCAT
* *
11816021 GAATAATGAAATCATGTCGT
1 GAATAATGAAATCAAGTCAT
*
11816041 GAACAATGA
1 GAATAATGA
11816050 TAAAATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.24
Consensus pattern (20 bp):
GAATAATGAAATCAAGTCAT
Found at i:11820621 original size:16 final size:16
Alignment explanation
Indices: 11820600--11820630 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
11820590 GCTCATTTGA
11820600 CATAGATTCAAATTGG
1 CATAGATTCAAATTGG
11820616 CATAGATTCAAATTG
1 CATAGATTCAAATTG
11820631 TGTGACTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (16 bp):
CATAGATTCAAATTGG
Found at i:11824104 original size:216 final size:216
Alignment explanation
Indices: 11823548--11829550 Score: 5713
Period size: 216 Copynumber: 27.6 Consensus size: 216
11823538 AACATTTATG
* * * *
11823548 AGTTCTTTGATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGA-AAAATTTTCT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* * * *
11823612 GAACATTCCATGCTCGAGAAATCGCAGT-ATTTGTTCCAAATAGTTTGTCATTTTCTAAACAACT
65 GAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
11823676 TTCGGTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTCTCTCTTAGTTCTTAGG-CAAAC
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCCGAAC
*
11823740 TTTCGAACTTGTCAAACTTTTACG
193 TTTCGAACTTGTCAAACTTTTACA
** * * * * * *
11823764 AGTTC-TAAATAACTTCGATTCCATACAGTATTCAAGACGATCCATTCCTTAGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
** * * *
11823828 AACATTCCATGCTCGAAAAATCGCATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAACATT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * *
11823893 TAGTCATCGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACTAACTTT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
*
11823958 CAAACTTGTCAAACTTTTACA
196 CGAACTTGTCAAACTTTTACA
* * * * * * * *
11823979 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGTCTATTCATTCTTTTGACCACTTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * * * *
11824044 AACATTCAATGCTTGGGAAATTGCATCATTTCGTCCAAATAGTTTGTTAGTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
** *
11824109 TTCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* *
11824173 CTGAACTAGTCAAACTTTTACG
196 C-GAACTTGTCAAACTTTTACA
** * * *
11824195 AGTTCTTAGATAACTTAT-TTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG-AAATTTTC
1 AGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * *
11824258 TAAGCATTCCATGCTCGGGAAATCACATCATTTGTTCCAAATAGTTTGTCATTTTGTAAACAATT
65 GAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
11824323 TTTGGTCTTTGAAATAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * *
11824388 TTTGAACTTCTCATACTTTTACG
194 TTCGAACTTGTCAAACTTTTACA
* * * * *
11824411 AGTTCTTTGATAACTTTGGTTCCTTAGAGTATTCAAGAAGATCCATTCATTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
** * * * *
11824476 AACATTCCATGCTCGAAAAAAT-GCATCATTTCGTCCAAATAGTTTATCATTTTGTAAATAACTT
66 AACATTCCATGCTCG-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * * **
11824540 TTGGTGTTTGAATTAAAGACTTATTTATGTGAGAATTGTTTCTCTTTTGATTCTTGGACTAACAC
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * *
11824605 TCAAACTTGTCAAACATTTACG
195 TCGAACTTGTCAAACTTTTACA
* * *
11824627 AGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* ** * *
11824692 AACATTTCATGCTTAGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* *
11824757 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTT-TATGG-TGAACTT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGCCGAACTT
* *
11824820 TCGAACTTCTTAAACTTTTACA
195 TCGAACTTGTCAAACTTTTACA
* * * * *
11824842 AGTTCTTTTATAACATCGG-TCCATTAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTT
1 AGTTCTTTTATAACTTTGGTTCC-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * *
11824906 GAACATTCTCAT-CTCGAGAAATCGCATCATCTGGTCCAAATAGTTTGTCATTTTGTGATCAACT
65 GAACATTC-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
11824970 TTTGCTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * *
11825035 TCCGAACTTGTCAAACTCTTACG
194 TTCGAACTTGTCAAACTTTTACA
* * * *
11825058 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGATCCATTCCTTCAAGCAATTTTTTT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTC
* * * * * * *
11825123 GAATATTCTATGCTCGGGAAATCACATCATTTGATCCAAATAGTTGGTCATTTTGTAAATAACTT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * **
11825188 TGGGTCTTTGAATTAAAAACTTCTTTTGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
*
11825253 TCGAACTTGTCAAACTTTTACG
195 TCGAACTTGTCAAACTTTTACA
* *
11825275 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * *
11825340 AACATTCCATGCTCGGGAAATTGCATGATTTGGTCCAAATAGTTTGTCATTTTATAAATAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
11825405 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAAATGTCTCTCTCTTGGTTCTTCGCCGAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
*
11825470 CGAACATGTCAAACTTTTA-A
196 CGAACTTGTCAAACTTTTACA
* ** * * * *
11825490 GAGTTTTTTTATAACTTTATTTCC-TAAAGGTATTGAAGACTATCCATTCCTTCAAG-AAATTTT
1 -AGTTCTTTTATAACTTTGGTTCCTTAAA-GTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* ** * * * *
11825553 CTAAACATTCCATGCTCAAGAAATCGCATCATTCGGTCTAAAAAGGTTGTCATTTTTTTAAA-AA
64 C-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAA
*** * * * * *
11825617 AAATTGGCCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTATTGGATCTTGGCTGAA
127 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
* * *
11825682 CTTTTGAACTTTTCAAACATTTACA
192 CTTTCGAACTTGTCAAACTTTTACA
* * *
11825707 AGTTCTTTTATAACATTT-GTTCCTTACAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCC
1 AGTTCTTTTATAAC-TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * *
11825771 GAACATTCAATGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
11825836 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCTT-G--G--C--
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
*
11825894 -CGAACTTGTCAAACTTTTACG
195 TCGAACTTGTCAAACTTTTACA
* * * *
11825915 AGTTCTTTCATAACTTTGGTTTCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAA-TTTTCT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* * * * * * *
11825979 AAACATTCAATGCTCGGGAGATCACATCTTTTGGTGTAAATAGTTTTTCATTTTGTAAACAACTT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
11826044 TTTGTCTTTGAATTAAAAACTTATTTTCGTGATAATTATTTCTCTCTTTGTTCTTGGCCGAACGT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* *
11826109 CCGAACTTGTCAAACTTTTACT
195 TCGAACTTGTCAAACTTTTACA
* * * * *
11826131 AGTTATTTT-TAAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCTACCAA-TTTTC
1 AGTTCTTTTAT-AACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * *
11826194 TGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAACT
65 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
11826259 TTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGTCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
*
11826324 TTCGAACATGTCAAACTTTTACA
194 TTCGAACTTGTCAAACTTTTACA
* * * ** *
11826347 AGTTTTTTTGTAACTTT--TTCCCTAAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTT
1 AGTTCTTTTATAACTTTGGTT-CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* ** * * * ** * *
11826410 GAACATTTCATGCTCAAGAAATCGCAACATTAGGTCTAAAAAGGCTGTCATTTTGTCGAA-AACA
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACT
* * * * *
11826474 TTTGGTCTTTGAATTTAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGATCTTGGCTGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
** *
11826539 TTCGATTTTTTCAAACTTTTACA
194 TTCGAACTTGTCAAACTTTTACA
* ** ** *
11826562 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAAACATTCCTTCGAGCAATTTCCCA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * **
11826627 AACATT-AACTGCTCGGGAAATCACATCTTTTGGTCTACGTAGTTTTGTCATTTTGTAAACAACT
66 AACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * *
11826691 TTTGGTCTTTTAATTAAAAACTGATTTTCGTGAGAATTCTTTCTCTCTTGGTTCTTGGCCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * *
11826756 TTC-AATCTTTTAAAACCTTTACA
194 TTCGAA-CTTGTCAAACTTTTACA
* * * *
11826779 AGTTCTTTTATAACTTTTGTTCCTTATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* *** * *
11826844 AACATTTCATGCTTAAG-AAT---AAC-TTCGGTTCCTAAA-AGCTTTCAAGACGATCCATTCTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGG-T-CTAAATAG-TTT------G-T-CATT-TT
* * * * ** * ** ** * * *
11826903 TTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATC-T-A-AATAGTTTGT
119 GTAAACAACTTTT-GGTCTTTGAAT--T----AAA-AAC-TTATTT-A-CGTGAGAATTGTTTCT
* * *** * ** *
11826965 CAT-TTTGTAAACAACTT-TTTG-TCTTT-GAA-TT-AAAAACTTATATTCGTGA
173 C-TCTTGGT-----TCTTGGCCGAACTTTCGAACTTGTCAAACTT-T-TAC---A
* * * * * * * * ** * * *
11827014 GAATTGTTTCTGT--C-TTGGTT-ATTGGCCAAACT-TTTACGA-GTTACTTTTTAACTTTTGTT
1 -AGTTCTTT-TATAACTTTGGTTCCTT----AAAGTATTCAAGACGAT-C-CATT--CCTTCG-A
* * * * * *
11827073 TCTTAAAGTATTC-AAGGCGATT-CATTCCTTCGAGCAATTTATTGAACATTTCATGCTCAAGAA
55 GC---AATTTTTCGAA--C-ATTCCA-TGC-TCG-GGAA---ATCG--CA--TCA---T------
* * * * *
11827136 ATTGAATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAACTTTAGGTCTTTGAATTAAAAAC
95 -TTG-GTC------T-AAAT-AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * * *
11827201 TTATTTACATGAAAATTGATTCTCTCTTGGTTGTTGGTCGAGC-TTCAGAACTTGTAAAACTTTT
150 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTTTT
*
11827265 ACG
214 ACA
* * *
11827268 AGTT-TTTTATAACTTT-GTT-TTGTAGATGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTT
1 AGTTCTTTTATAACTTTGGTTCCT-TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* ** * *
11827329 CTGAACATTCCATTCTTTGGAAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTGAAAAAA
64 C-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAA
* * * * *
11827394 GTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTTTTTCTCTCTTGGTTCATGGCCAAA
127 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
*
11827459 CTTGCGAACTTGTCAAACTTTTACA
192 CTTTCGAACTTGTCAAACTTTTACA
* * * * * *
11827484 AGTTCTTTTACAGCTTTAGTTCCTTAGAGTATTCAAGACGAT-CAATCATTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * * * * *
11827548 GACATTCAATGCTCAGGAAATCACATCTTTTGCTCTAAATAGTTTGTCATATTGTAAACAATTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
11827613 TTGTATTTAAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGCC-AAGATT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTT
* *
11827677 TCGAACTTTTCAAACTTTTACG
195 TCGAACTTGTCAAACTTTTACA
* * * * * *
11827699 AGTACTTTTATAACTTCGATTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * ** *
11827764 AACATTCAATGCTTGAGATATCAAATCATTTGGTCTAAATAGTTTATCATTTTGTAAA-AACCTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTT
** * * *
11827828 TTGGTCTTTGAATTAAAAACTTATTTTTGTTAGAATTGTTTCTCTCTTGGATCTTGGCTGAAC-T
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
11827892 TCAGAACCTT-TCAAAACTTTTACA
195 TC-GAA-CTTGTC-AAACTTTTACA
* * * *
11827916 TGTTCTTTTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-AAATTT
1 AGTTC---TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * ** *
11827980 TCTGAACATTTCATGCTCGAGAAATCGCATTAGGTGGTCTAAATAGTTTATCATTTTGTAAACAA
63 TC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
** * * * *
11828045 AATTTGGCCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGTCGAA
127 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
* *
11828110 CTTCCGAACTTGTCAAACTTTTACT
192 CTTTCGAACTTGTCAAACTTTTACA
* * *
11828135 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * *
11828200 AACATTCAATGCTCGAGAAGTCGCATCTTTTGGTCTAAATAGTTTGTCATTTTATAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * *
11828265 TGGTCTTTGAATTAAAAACTTATTTACGTAAGAATGGTTTCTCTCTTGGTTCTTAGTCGAGA-TT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTT
* * *
11828329 TTGAACTTGTCACACTTATACA
195 TCGAACTTGTCAAACTTTTACA
* ** * * * *
11828351 AGTTCTTTTACAACTTCAGTAT-CTTAAAGTATTCAATATGATCCATTCTTTCGTGCAATTTTTC
1 AGTTCTTTTATAACTTTGGT-TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * *
11828415 GAACA-TCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTATCATTTTGTAAATAACT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * *
11828479 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCAAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * *
11828544 TCCAAACTTTTCAAACTTTTACA
194 TTCGAACTTGTCAAACTTTTACA
* *
11828567 AGTTCTTTTATAACTTTGGTTGCTTAAAGT-TTCAAGACGATCCATTCCTTTGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* ** * * *
11828631 AACATTCAATGCTCGGGAAATTTCATCTTTTGGTCTAAATAGTTTGTCAGTTTGTAAATAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
11828696 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TGATTTCTCTTTTGGTTCTTAGCTGAGA-T
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGCCGA-ACT
** * *
11828759 TTTAAACTTGT-ACAC-TTTACG
194 TTCGAACTTGTCAAACTTTTACA
** *
11828780 AGTTCTTTTATAACTTTGGAACCTTAAAGTATTCAAGACGATTCATTCCTTCGTA-CAATTTTTC
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTTC
* * * * *
11828844 GAATATTCCATACTCTGGAAATCACATCATTTGGTCTAAATAGTTTTATCATTTTGTAAACAACT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * * *
11828909 TTTGGTCTTTGAATTAAAAATTTATTTACGTAAGAATTATTTCTCTCTTAGATCTTGGCCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * *
11828974 TCCCAACTTTTCAAACTTTTACT
194 TTCGAACTTGTCAAACTTTTACA
* *
11828997 AGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * *
11829062 AGCATTCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
11829127 TGGTCTTTGAATTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTTTTGGCCTAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* *
11829192 CGAACTTGTCAAATTTTTACG
196 CGAACTTGTCAAACTTTTACA
* * * * * *
11829213 AGTTATTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCAATTCCTTCGAGCGA-TTTTCT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* * ** * *
11829277 AAACATTTCATGCTCAAGAAATTGCATCATTTGGTCTAAATA-TTTGTCATTTTGTACACAACTT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
11829341 TAGGTCTTCGAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCTTGGTTCTTGGACAAACTT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
*
11829406 TCGAACTTGTC-AACTTTTTACG
195 TCGAACTTGTCAAAC-TTTTACA
* *** * * * * * * **
11829428 AGTTCTTTTATAACATCAATTGCTAAAAGTATTCAAGAAGATCCACTGCATCGAGCAATTTTAGG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
**** * **
11829493 AACATTCCATGCTTAAAAAATGGCATCATTTGGTCTAGAA-AGGCTGTCATTTTGTAAA
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAA
11829551 AATGATAATT
Statistics
Matches: 4775, Mismatches: 813, Indels: 398
0.80 0.14 0.07
Matches are distributed among these distances:
207 7 0.00
208 171 0.04
209 1 0.00
211 2 0.00
212 4 0.00
213 42 0.01
214 85 0.02
215 1102 0.23
216 2347 0.49
217 547 0.11
218 6 0.00
219 25 0.01
220 158 0.03
221 8 0.00
222 11 0.00
223 8 0.00
224 3 0.00
225 1 0.00
229 3 0.00
230 19 0.00
231 11 0.00
232 3 0.00
233 9 0.00
234 9 0.00
235 7 0.00
236 14 0.00
237 7 0.00
238 3 0.00
239 4 0.00
240 1 0.00
241 3 0.00
242 3 0.00
243 10 0.00
244 10 0.00
245 7 0.00
246 3 0.00
248 2 0.00
249 3 0.00
250 1 0.00
251 8 0.00
252 9 0.00
253 10 0.00
254 5 0.00
255 4 0.00
256 3 0.00
257 7 0.00
258 11 0.00
259 20 0.00
260 3 0.00
262 1 0.00
264 1 0.00
266 6 0.00
267 9 0.00
268 5 0.00
269 4 0.00
270 1 0.00
274 1 0.00
275 2 0.00
276 3 0.00
277 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
CGAACTTGTCAAACTTTTACA
Found at i:11824417 original size:432 final size:429
Alignment explanation
Indices: 11823548--11830716 Score: 5729
Period size: 432 Copynumber: 16.6 Consensus size: 429
11823538 AACATTTATG
* * * * *
11823548 AGTTCTTTGATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGA-AAAATTTTCT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTC-
* * * *
11823612 GAACATTCCATGCTCGAGAAATCGCAGT-ATTTGTTCCAAATAGTTTGTCATTTTCTAAACAACT
65 GAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
11823676 TTCGGTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTCTCTCTTAGTTCTTAGG-CAAAC
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCCGAAC
** ** * *
11823740 TT-TCGAACTTGTCAAACTTTTACGAGTTC-TAAATAACTTCGATTCCATACAGTATTCAAGACG
193 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TTTTCCTTAAAGTATTCAAGACG
* * ** *
11823803 ATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGAAAAATCGCATCATTTGGTCCAAAT
256 ATCCATTCCTTCGAGCAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * * *
11823868 AGTTTTTCATTTTGTAAACAACATTTAGTCATCGAATTAAAAACATATTTACGTGAGAATTGTTT
320 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * *
11823933 CTCTCTTGGTTCTTCGACTAACTTTCAAACTTGTCAAACTTTTACA
385 CTCTCTTGGTTCTT-GGCGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * * *
11823979 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGTCTATTCATTCTTTTGACCACTTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
* * * * * * *
11824044 AACATTCAATGCTTGGGAAATTGCATCATTTCGTCCAAATAGTTTGTTAGTTTGTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
** *
11824109 TTCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC
* **
11824174 TGAACTAGTCAAACTTTTACGAGTTCTTAGATAACTTATTTTCCTTAAAGTATTCAAGACGATCC
196 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TTTTCCTTAAAGTATTCAAGACGATCC
* * * * *
11824239 ATTCCTTCAAGAAATTTTCTAAGCATTCCATGCTCGGGAAATCACATCATTTGTTCCAAATAGTT
260 ATTCCTTCGAGCAATTTTCTAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
11824304 TGTCATTTTGTAAACAATTTTTGGTCTTTGAAATAAAAACTTATATACGTGAGAATTGTTTCTCT
324 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * *
11824369 CTTGGTTCTCGGACGAACTTTTGAACTTCTCATACTTTTACG
389 CTTGGTTCTTGG-CGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * *
11824411 AGTTCTTTGATAACTTTGGTTCCTTAGAGTATTCAAGAAGATCCATTCATTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
** * * * *
11824476 AACATTCCATGCTCGAAAAAAT-GCATCATTTCGTCCAAATAGTTTATCATTTTGTAAATAACTT
66 AACATTCCATGCTCG-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * * *
11824540 TTGGTGTTTGAATTAAAGACTTATTTATGTGAGAATTGTTTCTCTTTTGATTCTTGGACTAAC-A
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * *
11824604 CTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGATGAT
195 CT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTT-TTCCTTAAAGTATTCAAGACGAT
* * ** * *
11824669 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTTAGGAAATTGCATCATTTGGTCCAAATAG
258 CCATTCCTTCGAGCAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
*
11824734 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCT
322 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * *
11824799 CTCTTGGTT-TATGGTGAACTTTCGAACTTCTTAAACTTTTACA
387 CTCTTGGTTCT-TGGCGAACTTTCGAACTTGTCAAACTTTTACA
* * *
11824842 AGTTCTTTTATAACATCGG-TCCATTAAAGTATTCAAGACGA-TCGATTCCTTCAAGCAATTTTT
1 AGTTCTTTTATAACTTTGGTTCC-TTAAAGTATTCAAGACGATTC-ATTCCTTCGAGCAATTTTT
* * * * * *
11824905 TGAACATTCTCAT-CTCGAGAAATCGCATCATCTGGTCCAAATAGTTTGTCATTTTGTGATCAAC
64 CGAACATTC-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * *
11824969 TTTTGCTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
128 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* * * * *
11825034 TTCCGAACTTGTCAAACTCTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGA
193 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TTTCCTTAAAGTATTCAAGACGA
* * * * * * *
11825099 TCCATTCCTTCAAGCAATTTTTTTGAATATTCTATGCTCGGGAAATCACATCATTTGATCCAAAT
257 TCCATTCCTTCGAGCAA-TTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * **
11825164 AGTTGGTCATTTTGTAAATAACTTTGGGTCTTTGAATTAAAAACTTCTTTTGGTGAGAATTGTTT
320 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
*
11825229 CTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACG
385 CTCTCTTGGTTCTTGG-CGAACTTTCGAACTTGTCAAACTTTTACA
* * *
11825275 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
* * * * *
11825340 AACATTCCATGCTCGGGAAATTGCATGATTTGGTCCAAATAGTTTGTCATTTTATAAATAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * *
11825405 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAAATGTCTCTCTCTTGGTTCTTCGCCGAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC
* * * * * *
11825470 CGAACATGTCAAACTTTTAAGAGTTTTTTTATAACTTTATTTCC-TAAAGGTATTGAAGACTATC
196 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TTTCCTTAAA-GTATTCAAGACGATC
* * ** * * *
11825534 CATTCCTTCAAGAAATTTTCTAAACATTCCATGCTCAAGAAATCGCATCATTCGGTCTAAAAAGG
259 CATTCCTTCGAGCAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* *** * *
11825599 TTGTCATTTTTTTAAA-AAAAATTGGCCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCT
323 TTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
11825663 CTATTGGATCTTGGCTGAACTTTTGAACTTTTCAAACATTTACA
387 CTCTTGGTTCTTGGC-GAACTTTCGAACTTGTCAAACTTTTACA
* *
11825707 AGTTCTTTTATAACATTT-GTTCCTTACAGTATTCAAGACGA-TCAATTCCTTCGAGCAATTTTC
1 AGTTCTTTTATAAC-TTTGGTTCCTTAAAGTATTCAAGACGATTC-ATTCCTTCGAGCAATTTTT
* * *
11825770 CGAACATTCAATGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
64 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
11825835 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCTT-G--G--C-
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* *
11825894 -C-GAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTT-CTTAAAGTATTCAAGATGA
194 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT--TTTCCTTAAAGTATTCAAGACGA
* * * * * *
11825956 TCCATTCCTTCAAGCAATTTTCTAAACATTCAATGCTCGGGAGATCACATCTTTTGGTGTAAATA
257 TCCATTCCTTCGAGCAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * * *
11826021 GTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTCGTGATAATTATTTC
321 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * *
11826086 TCTCTTTGTTCTTGGCCGAACGTCCGAACTTGTCAAACTTTTACT
386 TCTCTTGGTTCTTGG-CGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * *
11826131 AGTTATTTT-TAAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCTACCAA-TTTTC
1 AGTTCTTTTAT-AACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTC
* * *
11826194 TGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAACT
65 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
11826259 TTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGTCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * * * **
11826324 T-TCGAACATGTCAAACTTTTACAAGTTTTTTTGTAACTTTTTCCCTAAAAGTATTCAAGATAAT
194 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTTTCCTTAAAGTATTCAAGACGAT
* * ** * * *
11826388 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAAGAAATCGCAACATTAGGTCTAAAAAG
258 CCATTCCTTCGAGCAATTTTCT-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
** * * * * *
11826453 GCTGTCATTTTGTCGAA-AACATTTGGTCTTTGAATTTAAAACTTATTTATGTGAGAATTATTTC
322 TTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* ** *
11826517 TCTCTTGGATCTTGGCTGAACTTTCGATTTTTTCAAACTTTTACA
386 TCTCTTGGTTCTTGGC-GAACTTTCGAACTTGTCAAACTTTTACA
* ** ** *
11826562 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAAACATTCCTTCGAGCAATTTCCCA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
* * * **
11826627 AACATT-AACTGCTCGGGAAATCACATCTTTTGGTCTACGTAGTTTTGTCATTTTGTAAACAACT
66 AACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * *
11826691 TTTGGTCTTTTAATTAAAAACTGATTTTCGTGAGAATTCTTTCTCTCTTGGTTCTTGGCCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * * *
11826756 T-TCAATCTTTTAAAACCTTTACAAGTTCTTTTATAACTTTTGTTCCTTATAGTATTCAAGACGA
194 TCTGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTT-TTCCTTAAAGTATTCAAGACGA
* * *** * *
11826820 TCCATTCCTTCGAGCAATTTTCCAAACATTTCATGCTTAAG-AAT---AAC-TTCGGTTCCTAAA
257 TCCATTCCTTCGAGCAATTTT-CTAACATTCCATGCTCGGGAAATCGCATCATTTGG-T-CTAAA
* * * * ** * ** **
11826880 -AGCTTTCAAGACGATCCATTCTTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
319 TAG-TTT------G-T-CATT-TTGTAAACAACTTTT-GGTCTTTGAAT--T----AAA-AAC-T
* * * * * * * ***
11826944 CATTTGATC-T-A-AATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAA-TTAAAAACTTA
365 TATTT-A-CGTGAGAATTGTTTCTC-TCTTG-------GTTCTTGGC---GAACTTTCGAAC---
* *
11827005 TATTCGTGAGAA-TTGTTTC-
414 --TT-GTCA-AACTT-TTACA
* * *
11827024 TG-TCTTGGTTATTGGCCAAACTTTTACGAGTTACTTTTTAACTTTTGT-TTCTTAA-A-G--T-
1 AGTTCTT--TTA-T-----AAC-TTT--G-GTT-C--CTTAA----AGTATTC--AAGACGATTC
*** * * * * *** * *
11827082 ATTCAAGGCGATTC-ATTCCTTCGAGCAATT-TATTGAACATTTCATGCTCAAGAAATTGAATCA
45 ATTC-CTTCGA-GCAATT-TTTCGAAC-ATTCCA-TG--CTCG----G-----GAAATCGCATCA
* * *
11827145 TTTGGTCTAAATAGTTTGTCATTTTGTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACA
94 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * *
11827210 TGAAAATTGATTCTCTCTTGGTTGTTGGTCGAGCTTCAGAACTTGTAAAACTTTTACGAGTT-TT
159 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT
* *
11827274 TTATAACTTTGTTT--TGTAGATGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGAACAT
224 TTATAACTTT-TTTCCT-TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AACAT
* ** * * *
11827337 TCCATTCTTTGGAAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTGAAAAAAGTTTTGGT
285 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGT
* * * * *
11827402 CTTTGAATTAAAAACTTATTTACATGAGAATTTTTTCTCTCTTGGTTCATGGCCAAACTTGCGAA
349 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAACTTTCGAA
11827467 CTTGTCAAACTTTTACA
413 CTTGTCAAACTTTTACA
* * * * * *
11827484 AGTTCTTTTACAGCTTTAGTTCCTTAGAGTATTCAAGACGA-TCAATCATTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
* * * * * * * *
11827548 GACATTCAATGCTCAGGAAATCACATCTTTTGCTCTAAATAGTTTGTCATATTGTAAACAATTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
11827613 TTGTATTTAAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAGATTT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTT
* * ** *
11827678 C-GAACTTTTCAAACTTTTACGAGTACTTTTATAACTTCGATTCCATAAAGTATTCAAGACGATC
195 CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TTTTCCTTAAAGTATTCAAGACGATC
* * * * * **
11827742 CATTCCTTCGAGCAATTTTCCAAACATTCAATGCTTGAGATATCAAATCATTTGGTCTAAATAGT
259 CATTCCTTCGAGCAATTTT-CTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* ** *
11827807 TTATCATTTTGTAAA-AACCTTTTGGTCTTTGAATTAAAAACTTATTTTTGTTAGAATTGTTTCT
323 TTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
*
11827871 CTCTTGGATCTTGGCTGAAC-TTCAGAACCTT-TCAAAACTTTTACA
387 CTCTTGGTTCTTGGC-GAACTTTC-GAA-CTTGTC-AAACTTTTACA
* * * * *
11827916 TGTTCTTTTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-AAATTT
1 AGTTC---TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTT
* * * ** *
11827980 TCTGAACATTTCATGCTCGAGAAATCGCATTAGGTGGTCTAAATAGTTTATCATTTTGTAAACAA
63 TC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
** * * * *
11828045 AATTTGGCCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGTCGAA
127 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
* * ** *
11828110 CTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
192 CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TTTTCCTTAAAGTATTCAAGACG
* * * * * *
11828175 ATCCATTCTTTCGAGCAATTTTTCGAACATTCAATGCTCGAGAAGTCGCATCTTTTGGTCTAAAT
256 ATCCATTCCTTCGAGCAA-TTTTCTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
11828240 AGTTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATGGTTT
320 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * *
11828305 CTCTCTTGGTTCTTAGTCGAGA-TTTTGAACTTGTCACACTTATACA
385 CTCTCTTGGTTCTT-GGCGA-ACTTTCGAACTTGTCAAACTTTTACA
* ** * * * * *
11828351 AGTTCTTTTACAACTTCAGTAT-CTTAAAGTATTCAATATGATCCATTCTTTCGTGCAATTTTTC
1 AGTTCTTTTATAACTTTGGT-TCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTC
* * *
11828415 GAACA-TCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTATCATTTTGTAAATAACT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * *
11828479 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCAAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
** * * * *
11828544 TCCAAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTGCTTAAAGT-TTCAAGACGAT
194 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TTTCCTTAAAGTATTCAAGACGAT
* * * ** *
11828608 CCATTCCTTTGAGCAATTTTTCGAACATTCAATGCTCGGGAAATTTCATCTTTTGGTCTAAATAG
258 CCATTCCTTCGAGCAA-TTTTCTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* *
11828673 TTTGTCAGTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TGATTTC
322 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTTC
* * ** * *
11828737 TCTTTTGGTTCTTAGCTGAGA-TTTTAAACTTGT-ACAC-TTTACG
386 TCTCTTGGTTCTTGGC-GA-ACTTTCGAACTTGTCAAACTTTTACA
**
11828780 AGTTCTTTTATAACTTTGGAACCTTAAAGTATTCAAGACGATTCATTCCTTCGTA-CAATTTTTC
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCG-AGCAATTTTTC
* * * * *
11828844 GAATATTCCATACTCTGGAAATCACATCATTTGGTCTAAATAGTTTTATCATTTTGTAAACAACT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * * *
11828909 TTTGGTCTTTGAATTAAAAATTTATTTACGTAAGAATTATTTCTCTCTTAGATCTTGGCCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
** * * *
11828974 TCCCAACTTTTCAAACTTTTACTAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAAGACGAT
194 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTT-TTCCTTAAAGTATTCAAGACGAT
* * * *
11829039 CCATTCCTTCGAGCAATTTTTCGAGCATTCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAG
258 CCATTCCTTCGAGCAA-TTTTCTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * *
11829104 TTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTTCGTGAGAATTATTTCT
322 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
11829169 CTCTTGGTTTTTGGCCTAACTTCCGAACTTGTCAAATTTTTACG
387 CTCTTGGTTCTTGG-CGAACTTTCGAACTTGTCAAACTTTTACA
* * * * *
11829213 AGTTATTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGA-TCAATTCCTTCGAGCGA-TTTTC
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTC-ATTCCTTCGAGCAATTTTTC
* * ** * *
11829276 TAAACATTTCATGCTCAAGAAATTGCATCATTTGGTCTAAATA-TTTGTCATTTTGTACACAACT
65 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * *
11829340 TTAGGTCTTCGAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCTTGGTTCTTGGACAAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
*** * * *
11829405 T-TCGAACTTGTC-AACTTTTTACGAGTTCTTTTATAACATCAATTGCTAAAAGTATTCAAGAAG
194 TCT-GAACTTGTCAAAC-TTTTACGAGTTCTTTTATAAC-TTTTTTCCTTAAAGTATTCAAGACG
* * * ** **** *
11829468 ATCCACTGCATCGAGCAATTTTAGGAACATTCCATGCTTAAAAAATGGCATCATTTGGTCTAGAA
256 ATCCATTCCTTCGAGCAATTTT-CTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AA
** * ** ***** * *
11829533 -AGGCTGTCATTTTGTAAA-AA----TGATAATTG--TTTCTCTCTTAGATCTT-GGT-CGAA--
319 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT--AT-TTACGTGAGAATT
* ** ** * * * *** *
11829586 CTTTCGATC-T--TT-TT--AAAATTTTAC-AAGTTCTTTTA-TTATTA-T
381 GTTTCTCTCTTGGTTCTTGGCGAACTTT-CGAACTTGTCAAACTT-TTACA
* * * * * * *** ** * *
11829628 TGTTC-CTTA-AAGTATTCAAGACGATCCATTCCATCGAGCATTTTTTTCGAAAATTCAATGC-T
1 AGTTCTTTTATAACT-TT---G--GTTCC-TT--A---A--AGTATTCAAGACGATTCATTCCTT
* ** * * * ** * * *
11829690 CGAG-AA---ATCG--CA-TCTTTTGGTC--TAAATAGTTTGTCATTT--TGTAAACAACTTTTG
52 CGAGCAATTTTTCGAACATTC-CATGCTCGGGAAATCG--CATCATTTGGTCTAAA-TA-GTTT-
* * ** *
11829744 GTC-TTTGAGTTAAA-AA--------CTTA--------------TTTACGTGAGAATTAATTATC
111 GTCATTT-TG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * *
11829785 TCTTGGATT-TTGACCGAACTT-TCGATCTTTTCAAACTTTTACAAGTTCTTTTATAACTTTGGT
174 TCTTGG-TTCTTGGCCGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TT
* * * * * *
11829848 TCCTTAAAGTATCCATGACGATCCATTGCTTCAAGTAATTTTTCGAACATT-CAGTGCTCGGGAA
236 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTAACATTCCA-TGCTCGGGAA
* * * *
11829912 A--GCAGTTCTTTTGGTCTAAATTGTTTGTCATTCTGTAAA-AA-TTTGGGTCTTTGAATTAAAA
299 ATCGCA--TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * ** * *
11829973 ACTTATTTTCGTGATAATTATTGCTCTCTTATTTCTTGGCCGAAC-TTCTGAACTTTTCAAACAT
362 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAACTTTC-GAACTTGTCAAACTT
**
11830037 TTATG
425 TTACA
* * * * * * * * * *
11830042 AGCTATTTTTTAACTTTTGTTCCTTAAAGTTTTCAAGGCGATCCATTCCTTCAATCAA-ATTTCT
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTC-
* * * * * * *
11830106 GAATATTCCATGCTCAGGAAGTTGCATCATTTGGTATAAATAGTTTGTTATTTTGTACACAACTT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * ** * * * *
11830171 TAGATCTTTGACGTAAAAACTCATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGGCAAACTT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * * *** * * *
11830236 -TCGAACTTGTAAAACATTTACAAGTTCTTTTATAACATCAATTCCTAAAAGTTTTCAACACGAT
195 CT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTTTTTCCTTAAAGTATTCAAGACGAT
* * * * * * *
11830300 CCATGCCTTCGAGTAATTTTTCGAACATTCAATACTCGGGAAATCGCAT-ATTTAAGACTAAATA
258 CCATTCCTTCGAGCAA-TTTTCTAACATTCCATGCTCGGGAAATCGCATCATTT-GGTCTAAATA
* * *
11830364 GTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGGATTGTTTC
321 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
** * * **
11830429 TCTCTTAATTCTTGGCTGAAC-TTCTAAACTTGTCAAACTATTATG
386 TCTCTTGGTTCTTGGC-GAACTTTC-GAACTTGTCAAACTTTTACA
* * ** * *
11830474 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGATGACCCATTCCTTCGAGTAATGTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
** * * * *
11830539 AACATTGAATGCTCGGGAAATCACATCTTTTGGTCCAAATAGTTTGTCATTTTGTAAAAAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
11830604 TGGTCTTTGAATTAAAAACCTATTTATGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTT-
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC
* * * * * *
11830668 TCGATCTTTTAAAACTTTTACAAGCTCTTTTATAACTTTGGTTCCTTAA
196 T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TTTCCTTAA
11830717 TGTAACAACC
Statistics
Matches: 5439, Mismatches: 985, Indels: 627
0.77 0.14 0.09
Matches are distributed among these distances:
398 3 0.00
399 5 0.00
400 131 0.02
401 9 0.00
402 14 0.00
403 12 0.00
404 5 0.00
405 5 0.00
406 7 0.00
407 6 0.00
408 5 0.00
409 21 0.00
410 9 0.00
411 10 0.00
412 2 0.00
413 14 0.00
414 10 0.00
415 9 0.00
416 19 0.00
417 1 0.00
418 10 0.00
419 8 0.00
420 16 0.00
421 6 0.00
422 8 0.00
423 27 0.00
424 339 0.06
425 16 0.00
426 15 0.00
427 13 0.00
428 6 0.00
429 73 0.01
430 349 0.06
431 1373 0.25
432 1640 0.30
433 428 0.08
434 4 0.00
435 58 0.01
436 296 0.05
437 12 0.00
438 6 0.00
439 8 0.00
440 7 0.00
441 2 0.00
442 9 0.00
443 11 0.00
444 8 0.00
445 3 0.00
446 5 0.00
447 9 0.00
448 11 0.00
449 5 0.00
452 3 0.00
453 2 0.00
455 5 0.00
456 3 0.00
457 4 0.00
459 8 0.00
460 6 0.00
461 12 0.00
462 5 0.00
463 8 0.00
464 1 0.00
465 2 0.00
466 5 0.00
467 4 0.00
468 1 0.00
469 3 0.00
470 3 0.00
472 2 0.00
473 5 0.00
474 11 0.00
475 9 0.00
476 11 0.00
477 6 0.00
478 4 0.00
479 9 0.00
480 4 0.00
481 3 0.00
482 9 0.00
483 11 0.00
484 1 0.00
485 2 0.00
486 1 0.00
487 3 0.00
488 60 0.01
489 97 0.02
490 22 0.00
491 8 0.00
492 5 0.00
493 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (429 bp):
AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC
TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTCGAGCAATTTTCTAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGCGAACTTTCGAACTTGTCAAACTTTTACA
Found at i:11825045 original size:431 final size:431
Alignment explanation
Indices: 11823548--11829550 Score: 5690
Period size: 431 Copynumber: 13.8 Consensus size: 431
11823538 AACATTTATG
* * ** *
11823548 AGTTCTTTGATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAAAAATTTTCTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * *
11823613 AACATTCCATGCTCGAGAAATCGCAGT-ATTTGTTCCAAATAGTTTGTCATTTTCTAAACAACTT
66 AACATTCCATGCTCGAGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * *
11823677 TCGGTCTTTGAATTAAAAACTTATTTACATGAGACTTGTTTCTCTCTTAGTTCTTAGG-CAAACT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACT
* ** * * *
11823741 TTCGAACTTGTCAAACTTTTACGAGTTC-TAAATAAC-TTCGATTCCATACAGTATTCAAGACGA
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGA
* * * *
11823804 TCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTC-GAAAAATCGCATCATTTGGTCCAAAT
258 TCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAG-GAAATCGCATCATTTGGTCTAAAT
* * * * * * *
11823868 AGTTTTTCATTTTGTAAACAACATTTAGTCATCGAATTAAAAACATATTTACGTGAGAATTGTTT
322 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTT
* *
11823933 CTCTCTTGGTTCTTCGACT-AACTTTCAAACTTGTCAAACTTTTACA
387 CTCTCTTGGTT-TT-GGCTGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * * * * *
11823979 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGTCTATTCATTCTTTTGACCACTTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * * * * * *
11824044 AACATTCAATGCTTGGGAAATTGCATCATTTCGTCCAAATAGTTTGTTAGTTTGTAAACAACTTT
66 AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
**
11824109 TTCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * **
11824174 TGAACTAGTCAAACTTTTACGAGTTCTTAGATAACTTATT-TTCCTTAAAGTATTCAAGACGATC
196 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TTGTTCCTTAAAGTATTCAAGACGATC
* * * * * * * *
11824238 CATTCCTTCAAGAAATTTTCT-AAGCATTCCATGCTCGGGAAATCACATCATTTGTTCCAAATAG
260 CATTCCTTCGAGCAATTTTTTGAA-CATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
* * * *
11824302 TTTGTCATTTTGTAAACAATTTTTGGTCTTTGAAATAAAAACTTATATACGTGAGAATTGTTTCT
324 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCT
* * * * *
11824367 CTCTTGGTTCTCGGAC-GAACTTTTGAACTTCTCATACTTTTACG
389 CTCTTGGTT-TTGG-CTGAACTTTCGAACTTGTCAAACTTTTACA
* * * *
11824411 AGTTCTTTGATAACTTTGGTTCCTTAGAGTATTCAAGAAGATCCATTCATTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * * *
11824476 AACATTCCATGCTCGAAAAAAT-GCATCATTTCGTCCAAATAGTTTATCATTTTGTAAATAACTT
66 AACATTCCATGCTCG-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * *
11824540 TTGGTGTTTGAATTAAAGACTTATTTATGTGAGAATTGTTTCTCTTTTGATTCTTGGACTAAC-A
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
11824604 CTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGATGAT
195 C-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * *
11824669 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTTAGGAAATTGCATCATTTGGTCCAAATAG
259 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
11824734 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCT
324 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCT
* *
11824799 CTCTTGGTTTATGG-TGAACTTTCGAACTTCTTAAACTTTTACA
389 CTCTTGGTTT-TGGCTGAACTTTCGAACTTGTCAAACTTTTACA
* * * *
11824842 AGTTCTTTTATAACATCGG-TCCATTAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTT
1 AGTTCTTTTATAACTTTGGTTCC-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTT
* * * *
11824906 GAACATTCTCAT-CTCGAGAAATCGCATCATCTGGTCCAAATAGTTTGTCATTTTGTGATCAACT
65 GAACATTC-CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
11824970 TTTGCTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
11825035 TCCGAACTTGTCAAACTCTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGAT
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * * * *
11825100 CCATTCCTTCAAGCAATTTTTTTGAATA-TTCTATGCTCGGGAAATCACATCATTTGATCCAAAT
259 CCATTCCTTCGAGCAA-TTTTTTGAACATTTC-ATGCTCAGGAAATCGCATCATTTGGTCTAAAT
* * * * ** *
11825164 AGTTGGTCATTTTGTAAATAACTTTGGGTCTTTGAATTAAAAACTTCTTTTGGTGAGAATTGTTT
322 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTT
* *
11825229 CTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACG
387 CTCTCTTGGTT-TTGGCTGAACTTTCGAACTTGTCAAACTTTTACA
*
11825275 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * * * *
11825340 AACATTCCATGCTCGGGAAATTGCATGATTTGGTCCAAATAGTTTGTCATTTTATAAATAACTTT
66 AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
11825405 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAAATGTCTCTCTCTTGGTTCTTCGCCGAACTTC
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * *
11825470 CGAACATGTCAAACTTTTAAGAGTTTTTTTATAACTTTAT-TTCC-TAAAGGTATTGAAGACTAT
196 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-TGTTCCTTAAA-GTATTCAAGACGAT
* * * * * * * *
11825533 CCATTCCTTCAAGAAATTTTCTAAACATTCCATGCTCAAGAAATCGCATCATTCGGTCTAAAAAG
259 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
* * *** * * *
11825598 GTTGTCATTTTTTTAAA-AAAAATTGGCCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTC
324 TTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC
* * * * *
11825662 TCTATTGGATCTTGGCTGAACTTTTGAACTTTTCAAACATTTACA
388 TCTCTTGG-TTTTGGCTGAACTTTCGAACTTGTCAAACTTTTACA
* * **
11825707 AGTTCTTTTATAACATTT-GTTCCTTACAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCC
1 AGTTCTTTTATAAC-TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTT
* *
11825771 GAACATTCAATGCTC-AGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
65 GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
11825835 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCTT-G--G----
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
11825893 -CCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTTCTTAAAGTATTCAAGATGAT
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * * * * * *
11825957 CCATTCCTTCAAGCAATTTTCTAAACA-TTCAATGCTCGGGAGATCACATCTTTTGGTGTAAATA
259 CCATTCCTTCGAGCAATTTTTTGAACATTTC-ATGCTCAGGAAATCGCATCATTTGGTCTAAATA
* * * *
11826021 GTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTCGTGATAATTATTTC
323 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC
* * * * *
11826086 TCTCTTTGTTCTTGGCCGAACGTCCGAACTTGTCAAACTTTTACT
388 TCTCTTGGTT-TTGGCTGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * *
11826131 AGTTATTTT-TAAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCTACCAATTTTCT
1 AGTTCTTTTAT-AACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTT
* *
11826195 GAACATTCCATGCTC-AGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAACT
65 GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
11826259 TTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGTCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * **
11826324 TTCGAACATGTCAAACTTTTACAAGTTTTTTTGTAACTTTT-TCCCTAAAAGTATTCAAGATAAT
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * *
11826388 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAAGAAATCGCAACATTAGGTCTAAAAAG
259 CCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
** * * * *
11826453 GCTGTCATTTTGTCGAA-AACATTTGGTCTTTGAATTTAAAACTTATTTATGTGAGAATTATTTC
324 TTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC
* ** *
11826517 TCTCTTGGATCTTGGCTGAACTTTCGATTTTTTCAAACTTTTACA
388 TCTCTTGG-TTTTGGCTGAACTTTCGAACTTGTCAAACTTTTACA
* ** ****
11826562 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAAACATTCCTTCGAGCAATTTCCCA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * * **
11826627 AACATT-AACTGCTCGGGAAATCACATCTTTTGGTCTACGTAGTTTTGTCATTTTGTAAACAACT
66 AACATTCCA-TGCTCGAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * * *
11826691 TTTGGTCTTTTAATTAAAAACTGATTTTCGTGAGAATTCTTTCTCTCTTGGTTCTTGGCCGAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
11826756 TTC-AATCTTTTAAAACCTTTACAAGTTCTTTTATAACTTTTGTTCCTTATAGTATTCAAGACGA
194 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
*** * * * *
11826820 TCCATTCCTTCGAGCAATTTTCCAAACATTTCATGCTTAAG-AAT---AAC-TTCGGTTCCTAAA
258 TCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGG-T-CTAAA
* * * * ** * ** **
11826880 -AGCTTTCAAGACGATCCATTCTTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
321 TAG-TTT------G-T-CATT-TTGTAAACAACTTTT-GGTCTTTGAAT--T----AAA-AAC-T
* * * * * ***
11826944 CATTTGATC-T-A-AA-TAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAA-TTAAAAACTT
367 TATTT-A-CGTGAGAATTA-TTTCTC-TCTTG--------GTTTTGGC--TGAACTTTCGAAC--
* *
11827004 ATATTCGTGAGAA-TTGTTTC-
416 ---TT-GTCA-AACTT-TTACA
* * * * ***** * ** * *
11827024 TG-TCTTGGTTATTGGCCAAACTTTTACGAGTTACTTTTTAACT-TTTGTTTC-TTAAAGT-ATT
1 AGTTCTT--TTA-T-----AAC-TTT--G-GTT-C-CTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * * *
11827085 CAAGGCGATTCATTCCTTCGAGCAATTTATTGAACATTTCATGCTCAAGAAATTGAATCATTTGG
52 CGA-GCAATT--TT--TT---G-AA--CATT--CCA-T----GCTCGAGAAATCGCATCATTTGG
* * * *
11827150 TCTAAATAGTTTGTCATTTTGTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACATGAAA
99 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * *
11827215 ATTGATTCTCTCTTGGTTGTTGGTCGAGCTTCAGAACTTGTAAAACTTTTACGAGTT-TTTTATA
164 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * *
11827279 AC-TTTGTT-TTGTAGATGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGAACATTCCAT
229 ACTTTTGTTCCT-TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTTCAT
* ** * * *
11827342 TCTTTGGAAATCGCATCATTTGTTCTAAATAGTTTGTCATTTTGTGAAAAAAGTTTTGGTCTTTG
292 GCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTG
* * * ** *
11827407 AATTAAAAACTTATTTACATGAGAATTTTTTCTCTCTTGGTTCATGGCCAAACTTGCGAACTTGT
356 AATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTT-TTGGCTGAACTTTCGAACTTGT
11827472 CAAACTTTTACA
420 CAAACTTTTACA
* * * * * * *
11827484 AGTTCTTTTACAGCTTTAGTTCCTTAGAGTATTCAAGACGAT-CAATCATTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * * * * *
11827548 GACATTCAATGCTC-AGGAAATCACATCTTTTGCTCTAAATAGTTTGTCATATTGTAAACAATTT
66 AACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
11827612 TTTGTATTTAAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTGGTTCTTGG-CCAAGAT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CT
* * * * *
11827676 TTCGAACTTTTCAAACTTTTACGAGTACTTTTATAAC-TTCGATTCCATAAAGTATTCAAGACGA
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGA
*** * * **
11827740 TCCATTCCTTCGAGCAATTTTCCAAACA-TTCAATGCT-TGAGATATCAAATCATTTGGTCTAAA
258 TCCATTCCTTCGAGCAATTTTTTGAACATTTC-ATGCTCAG-GAAATCGCATCATTTGGTCTAAA
* ** * *
11827803 TAGTTTATCATTTTGTAAA-AACCTTTTGGTCTTTGAATTAAAAACTTATTTTTGTTAGAATTGT
321 TAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTAT
*
11827867 TTCTCTCTTGGATCTTGGCTGAAC-TTCAGAACCTT-TCAAAACTTTTACA
385 TTCTCTCTTGG-TTTTGGCTGAACTTTC-GAA-CTTGTC-AAACTTTTACA
* * * *
11827916 TGTTCTTTTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTT
1 AGTTC---TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * ** * *
11827981 CTGAACATTTCATGCTCGAGAAATCGCATTAGGTGGTCTAAATAGTTTATCATTTTGTAAACAAA
63 TTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * *
11828046 ATTTGGCCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGTCGAAC
128 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* ** *
11828111 TTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
193 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
* * * *
11828176 TCCATTCTTTCGAGCAATTTTTCGAACA-TTCAATGCTC-GAGAAGTCGCATCTTTTGGTCTAAA
258 TCCATTCCTTCGAGCAATTTTTTGAACATTTC-ATGCTCAG-GAAATCGCATCATTTGGTCTAAA
* * **
11828239 TAGTTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATGGTT
321 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATT
* * * *
11828304 TCTCTCTTGGTTCTTAG-TCGAGA-TTTTGAACTTGTCACACTTATACA
386 TCTCTCTTGGTT-TTGGCT-GA-ACTTTCGAACTTGTCAAACTTTTACA
* ** * * * * *
11828351 AGTTCTTTTACAACTTCAGTAT-CTTAAAGTATTCAATATGATCCATTCTTTCGTGCAATTTTTC
1 AGTTCTTTTATAACTTTGGT-TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTT
* * * *
11828415 GAACA-TCCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTATCATTTTGTAAATAACT
65 GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACT
* * * *
11828479 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCAAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
11828544 TCCAAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTGCTTAAAGT-TTCAAGACGAT
194 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * ** *
11828608 CCATTCCTTTGAGCAATTTTTCGAACA-TTCAATGCTCGGGAAATTTCATCTTTTGGTCTAAATA
259 CCATTCCTTCGAGCAATTTTTTGAACATTTC-ATGCTCAGGAAATCGCATCATTTGGTCTAAATA
* * *
11828672 GTTTGTCAGTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATGATTTC
323 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC
* * ** * *
11828737 TCTTTTGGTTCTTAGCTGAGA-TTTTAAACTTGT-ACAC-TTTACG
388 TCTCTTGGTT-TTGGCTGA-ACTTTCGAACTTGTCAAACTTTTACA
** * *
11828780 AGTTCTTTTATAACTTTGGAACCTTAAAGTATTCAAGACGATTCATTCCTTCGTA-CAATTTTTC
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTTT
* * * *
11828844 GAATATTCCATACTCTG-GAAATCACATCATTTGGTCTAAATAGTTTTATCATTTTGTAAACAAC
65 GAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAC
* * * * * *
11828908 TTTTGGTCTTTGAATTAAAAATTTATTTACGTAAGAATTATTTCTCTCTTAGATCTTGGCCGAAC
128 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
11828973 TTCCCAACTTTTCAAACTTTTACTAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAAGACGA
193 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
* * * *
11829038 TCCATTCCTTCGAGCAATTTTTCGAGCA-TTCAATGCTCGGGAAATCGCATCTTTTGGTCTAAAT
258 TCCATTCCTTCGAGCAATTTTTTGAACATTTC-ATGCTCAGGAAATCGCATCATTTGGTCTAAAT
* *
11829102 AGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTTCGTGAGAATTATTT
322 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTT
* * *
11829167 CTCTCTTGGTTTTTGGCCT-AACTTCCGAACTTGTCAAATTTTTACG
387 CTCTCTTGG-TTTTGG-CTGAACTTTCGAACTTGTCAAACTTTTACA
* * * * * * * *
11829213 AGTTATTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCAATTCCTTCGAGCGATTTTCTA
1 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
* * * *
11829278 AACATTTCATGCTCAAGAAATTGCATCATTTGGTCTAAATA-TTTGTCATTTTGTACACAACTTT
66 AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
11829342 AGGTCTTCGAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCTTGGTTCTTGGACAAACTTT
131 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* *** * * *
11829407 CGAACTTGTC-AACTTTTTACGAGTTCTTTTATAACATCAATTGCTAAAAGTATTCAAGAAGATC
196 CGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATC
* * * ** * * ** *
11829471 CACTGCATCGAGCAATTTTAGGAACATTCCATGCTTAAAAAATGGCATCATTTGGTCTAGAA-AG
260 CATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTA-AATAG
**
11829535 GCTGTCATTTTGTAAA
324 TTTGTCATTTTGTAAA
11829551 AATGATAATT
Statistics
Matches: 4614, Mismatches: 759, Indels: 398
0.80 0.13 0.07
Matches are distributed among these distances:
423 15 0.00
424 341 0.07
425 5 0.00
427 1 0.00
428 4 0.00
429 67 0.01
430 197 0.04
431 1391 0.30
432 1358 0.29
433 430 0.09
434 4 0.00
435 51 0.01
436 302 0.07
437 12 0.00
438 9 0.00
439 8 0.00
440 7 0.00
441 1 0.00
442 1 0.00
444 1 0.00
446 6 0.00
447 12 0.00
448 21 0.00
449 11 0.00
452 3 0.00
453 2 0.00
455 5 0.00
456 3 0.00
457 4 0.00
459 8 0.00
460 6 0.00
461 12 0.00
462 5 0.00
463 8 0.00
464 1 0.00
465 2 0.00
466 7 0.00
467 3 0.00
469 3 0.00
470 3 0.00
472 6 0.00
473 13 0.00
474 14 0.00
475 14 0.00
476 4 0.00
480 1 0.00
481 2 0.00
482 9 0.00
483 14 0.00
484 1 0.00
485 1 0.00
486 3 0.00
487 8 0.00
488 56 0.01
489 96 0.02
490 26 0.01
491 8 0.00
492 5 0.00
493 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (431 bp):
AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
ATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCT
CTTGGTTTTGGCTGAACTTTCGAACTTGTCAAACTTTTACA
Found at i:11830253 original size:216 final size:216
Alignment explanation
Indices: 11829561--11830716 Score: 1156
Period size: 216 Copynumber: 5.4 Consensus size: 216
11829551 AATGATAATT
* * * * * *
11829561 GTTTCTCTCTTAGATCTTGGTCGAACTTTCGATCTTTTTAAA-ATTTTACAAGTTCTTTTATTA-
1 GTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACA-TTTACAAGTTCTTTTATAAC
* * ** ** *
11829624 TTATTGTTCCTTAAAGTATTCAAGACGATCCATTCCATCGAGCATTTTTTTCGAAAATTCAATGC
65 TT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-AATAAATTTTTCGAACATTCAATGC
* *
11829689 TCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAGT
128 TCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
11829754 TAAAAACTTATTTACGTGAGAATTA
193 TAAAAACTTATTTACGTGAGAA-TA
* * * * *
11829779 -ATTATCTCTTGGATT-TTGACCGAACTTTCGATCTTTTCAAACTTTTACAAGTTCTTTTATAAC
1 GTTTCTCTCTTGG-TTCTTGGCCGAACTTTCGAACTTTTCAAACATTTACAAGTTCTTTTATAAC
* * * *
11829842 TTTGGTTCCTTAAAGTATCCATGACGATCCATTGCTTCAAGT-AATTTTTCGAACATTCAGTGCT
65 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAA-TAAATTTTTCGAACATTCAATGCT
* * *
11829906 CGGGAAA--GCAGTTCTTTTGGTCTAAATTGTTTGTCATTCTGTAAA-AA-TTTGGGTCTTTGAA
129 CGGGAAATCGCA--TCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
11829967 TTAAAAACTTATTTTCGTGATAATTA
192 TTAAAAACTTATTTACGTGAGAA-TA
* ** ** * * *
11829993 -TTGCTCTCTTATTTCTTGGCCGAAC-TTCTGAACTTTTCAAACATTTATGAGCTATTTTTTAAC
1 GTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTTTCAAACATTTACAAGTTCTTTTATAAC
* * * * * *
11830056 TTTTGTTCCTTAAAGTTTTCAAGGCGATCCATTCCTTCAATCAAATTTCT-GAATATTCCATGCT
65 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAT-AAATTTTTCGAACATTCAATGCT
* * * * * * * * * **
11830120 CAGGAAGTTGCATCATTTGGTATAAATAGTTTGTTATTTTGTACACAACTTTAGATCTTTGACGT
129 CGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
11830185 AAAAACTCATTTACGTGAGAATA
194 AAAAACTTATTTACGTGAGAATA
* * * * *
11830208 GTTTCTCTCTTGGTTCTTGGGCAAACTTTCGAACTTGTAAAACATTTACAAGTTCTTTTATAACA
1 GTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACATTTACAAGTTCTTTTATAACT
*** * * * * * *
11830273 TCAATTCCTAAAAGTTTTCAACACGATCCATGCCTTCGAGT-AATTTTTCGAACATTCAATACTC
66 TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-AATAAATTTTTCGAACATTCAATGCTC
* ** * *
11830337 GGGAAATCGCATATTTAAGACTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTA
130 GGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
11830402 AAAACTTATTTACTTGAGGATT
195 AAAACTTATTTACGTGAGAATA
** * * * **
11830424 GTTTCTCTCTTAATTCTTGGCTGAAC-TTCTAAACTTGTCAAAC-TATTATGAGTTCTTTTATAA
1 GTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTTTCAAACAT-TTACAAGTTCTTTTATAA
* * * * * *
11830487 CTTTGGTTCCTTAAAGTATACAAGATGACCCATTCCTTCGAGT-AATGTTTCGAACATTGAATGC
64 CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-AATAAATTTTTCGAACATTCAATGC
* * *
11830551 TCGGGAAATCACATCTTTTGGTCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAT
128 TCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
11830616 TAAAAACCTATTTATGTGAGAATT
193 TAAAAACTTATTTACGTGAGAATA
* * * * *
11830640 GTTTCTCTCTTGGATCTTGGCCGAACTTTCGATCTTTTAAAACTTTTACAAGCTCTTTTATAACT
1 GTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACATTTACAAGTTCTTTTATAACT
11830705 TTGGTTCCTTAA
66 TTGGTTCCTTAA
11830717 TGTAACAACC
Statistics
Matches: 760, Mismatches: 156, Indels: 46
0.79 0.16 0.05
Matches are distributed among these distances:
213 6 0.01
214 159 0.21
215 22 0.03
216 480 0.63
217 90 0.12
218 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
GTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTTTCAAACATTTACAAGTTCTTTTATAACT
TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAATAAATTTTTCGAACATTCAATGCTCG
GGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAGAATA
Found at i:11834391 original size:216 final size:216
Alignment explanation
Indices: 11833669--11838032 Score: 4754
Period size: 216 Copynumber: 20.3 Consensus size: 216
11833659 GGGTGTTACA
* *
11833669 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTT-TCGAACATTCAATGCTC-AGGAAA
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGA-GAAA
* * * * * * *
11833732 TCACATCTTTTTGTCTAAATATTTTTTCATTTTGTAAACAACTTTTGGT-TTTTAAGTTAAAAAG
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAAC
** * * * * *
11833796 TTATTTTTGTGAGAATTATTTCTCTCTTGGTTCTTTGTCGAACTTCCAAACTTTTCAAACTTTTA
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
* * **
11833861 CGATTTGTTTT-TAACTTTTGTTC
193 CGAGTTCTTTTATAACTTCGGTTC
* * * * ** * *
11833884 CTTAAACTGTTCAAGGCGGTCCATTCCTTATAGAAAATTTCT-AATCATTCCATGCTC-AGTAAA
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-CATTCCATGCTCGAG-AAA
* * * ** *
11833947 TCACATCATTTGGTCTATATAGTTT-TCCATTTCGTTCACAACTTTAGGTCTTTGAATTAAAAAC
64 TCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* ** * *
11834011 TTATTTACCTGAGAATTGTTTAACTCTTGCTTCTTGGCCGAACTTCCGAACATGTCAAACTTTTA
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
***
11834076 CGA-TT-TTTTCATAA-TTTTTTTC
193 CGAGTTCTTTT-ATAACTTCGGTTC
* * * * *
11834098 CTAAAAGTATTCAAGACAATCCATTCCTTCAAGCAATTTTCCT-TACATTCCATGCTCAAGAAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CTGAACATTCCATGCTCGAGAAAT
* * * * ** * *
11834162 CGCATCATTTGGTCTAGAAAAG-TTGTCATTATCTAAAAAACAATTGGTCTTTGAATAAAAAATT
65 CGCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * ** * *
11834226 TATTTACGTGAGAATTCTTTCTCTCTTGGATCTTGGTCGAACTTCTAAACTTTTCAAAATTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
* **
11834291 AAGTTCTTTTATAACTT-TTTCTC
194 GAGTTCTTTTATAACTTCGGT-TC
* * * *
11834314 CTTAAAGTATTCAAGACTATCCATTCCTTCGAGCAATTTTCTGAACGTTCAATGCTCGAGAAATT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* * *
11834379 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * ** * * * * *
11834444 TTTTCATGAGAATTGTTTCTCTCTTGGTTCGTAACTG-ACATTTCAAACTTGTCAGACTTTTACA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTCCGAACTTGTCAAACTTTTACG
* *
11834508 AGTACTTTTTTAACTTCGGTTC
195 AGTTCTTTTATAACTTCGGTTC
* * * *
11834530 CTTAAAGCAATCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* **
11834595 GCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTTATCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
11834660 TTTTCGTGAGAATTGTTTATGTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTATTAC-A
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
**
11834724 TGTTCTTTTATAACTTTTGTTC
196 -GTTCTTTTATAACTTCGGTTC
* * * ** *
11834746 TTTAAGGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TCGAACATTTAATGCTCGGGAAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAAT
* * * *
11834810 CGTATCTTTTGGTCTAAATAGTTTGCCATTTTGTACAA-AACTTTAGGTCTTTGAATTAAAAACT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
11834874 TATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCAAACTTGTAAAAGTTTTAT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
* *
11834939 GAGTTTTTTTATAACTT-TGTTC
194 GAGTTCTTTTATAACTTCGGTTC
* * * *
11834961 CGTAAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTATGAACATTCCATTCTCTGA-AAA
1 C-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAGAAA
* *
11835025 TCGCATCATTTGTTCTAAATAGTTTGTCGTTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
11835090 T-TTTACATAAGAATT-TTCTCTCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAAATTTTA
129 TATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTA
* * *
11835153 CAAGTTCTTTTACAACTTCAGTTC
193 CGAGTTCTTTTATAACTTCGGTTC
* * * * *
11835177 CTTAGAGTATTCATCAAGACAATCCAATCCTTCGAGCAATTTTCTGAACATTCAATGCTCAAGAA
1 CTTAAAGTA-T--TCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * *
11835242 ATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTTTTGTCTTTAAATTAAAAAC
63 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* *
11835307 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAGA-TTTCTAACTTGTCAAACTTTT
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTTCCGAACTTGTCAAACTTTT
* * *
11835371 A-TAGGTACTTTTATAACTTCGATTC
192 ACGA-GTTCTTTTATAACTTCGGTTC
* * * * *
11835396 CTTAAAGTATTCAAGACTATCAATTCCCTCGAGCAATTTTC-GAAACATTCAATGCTCGAGATAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AACATTCCATGCTCGAGAAAT
** * **
11835460 CAAATCATTTGGTCTAAATAGTTTATCATTTCATAAA-ACACTTTTGGTCTTTGAATTAAAAACT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACT
* * * * *
11835524 TATTTACGTGAGAATTGTTTCTCTATTTGTTCCTAGCCGAGA-TTTCGAACTTGTCAAACTTTTA
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTTCCGAACTTGTCAAACTTTTA
* *
11835588 CGAGTTATTTTATAACTTAGGTTC
193 CGAGTTCTTTTATAACTTCGGTTC
* * ** * *
11835612 CTTAAAGTATTCAAGATGATCCATTCTTTTTAAGCAATTTTCTGAACACTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGACGATCCATTC-CTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAAT
* * * * *
11835677 CGCATTATTTGGTCTAAATAGTTCGTAATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACGT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * ** *
11835742 ATTTTCATGAGAATTGTTTCTCTCTTGGCTCTTGGCC-ATACATGTGAACTTGTCAAACTTTTAA
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTTCCGAACTTGTCAAACTTTTAC
* **
11835806 GAGTTCATTTATAACTTTTGTTC
194 GAGTTCTTTTATAACTTCGGTTC
* ** ** *
11835829 CTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TCGAACATTAAATGCAGGAGGAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAAT
* * * * ** *
11835893 CGTATCATTTGGTCTAAATAGTTTGTCATTTCGCAGACAACTTTTGCCCTTTGAATTAAAAATTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* ** * * * *
11835958 ATTTACGTGAGAATTATTTCTCTCTTGCATCTTAGCCGAACTTCCAAACTTTTCAAACTTTTACA
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
* * *
11836023 AGTTATTCTATAACTTGGGTT-
195 AGTTCTTTTATAACTTCGGTTC
* ** * * * * *
11836044 CTATAAGGTATTCAAGATAATCCTTTCCTTTGAGTAA-TTTCTCGAACTTTTCATGCTCGAGAAA
1 CT-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAA
* * * *
11836108 TCACATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACTTTTGGACTATGAATTAAAAACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
11836173 TATTTACGTGAGAATTGTTTATCTCTTCGTTCTTGGTCGAACTTCCAAACTTGTCCAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
11836238 GAGTTCTTTTATAACTTC-GTTC
194 GAGTTCTTTTATAACTTCGGTTC
* * * * *
11836260 CTTAAAGTATTCAAGACGATCCATTCCTTCAAGTAATTTTCGGAACATTCCATTCTCGGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* *
11836325 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAATACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * * *
11836390 TTTACAAGAGAATTTTTTCTCTCTTGGTGCTTGGTCGAACTTCCGAACTTGTCAAACTTTTAGGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
11836455 GTTC-TTTATAACTTCGGTTC
196 GTTCTTTTATAACTTCGGTTC
* * * * *
11836475 CTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATTTTTTGAACATTCCATGCTCGGGAAATT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* * *
11836540 GCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACATTTGGTCTTTGAATTAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * *** **
11836605 TTTTTGTGAGAATTGTTTCTCTCTTGGATGTTGTTTGAACTTCTTAACCTT-TCAAACTTTTAC-
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAA-CTTGTCAAACTTTTACG
*
11836668 ATGTTCTTTTATAACTTCAGTTC
195 A-GTTCTTTTATAACTTCGGTTC
* * * * * *
11836691 CTTAAAGTATTTAAGACGATTCGTTCCTTCGAGAAATTTT-TCGAACATTTCATGGTCTG-GAAA
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC-GAGAAA
* * * * *
11836754 TTGCATCAGTTGGTCTAAATAGTTTATCTTTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
11836819 TATGTACGTGAGAATTATTACTCTCTTGGTTCCTGGCTGAAC-TCCCAAGCTTGTCAAACTTTTA
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAA-CTTGTCAAACTTTTA
* *
11836883 CTAGTTC-TTTATAACTTAGGTTC
193 CGAGTTCTTTTATAACTTCGGTTC
* * *
11836906 CTTAAAGTATTCAAGAAGATCCATTCGTTCGAGCAATTTCCTGAACATTCCATGCTCGAGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* * * *
11836971 CCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAAATAAAAACTTA
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
11837036 TTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGCCGAACTTCCGAACTTG-CCAACTTTTTATG
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAAC-TTTTACG
**
11837100 AGTTCTTTTATAACTTCAATTC
195 AGTTCTTTTATAACTTCGGTTC
*
11837122 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGGGAAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAAT
* *
11837186 CGCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
11837251 ATTGACGTGAGAATTGTTTCTCTGTTTGTTCTTGGCCGAGA-TTTCAAACTTGTTAAACTTTTAC
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-ACTTCCGAACTTGTCAAACTTTTAC
* **
11837315 GAGTTATTTTATAACTTAAGTTC
194 GAGTTCTTTTATAACTTCGGTTC
* * * * * *
11837338 CTTAAAATATTCAAGACAATCCATTCCTTTGAGTAATTTTCT-AAAATTTTCATGCTC-AGGAAA
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACA-TTCCATGCTCGA-GAAA
* * * * * *
11837401 TTGCATCATTTGGTCTAAATAGTTTGTCATTTGGTAAATAACTTTTGGACTATGAATTAAACACT
64 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *
11837466 TATTTACGTGAGAATT-TTTTTCTCTTCGTTCTTGGCCGAACTTCCGAACTTGTCCAACTTTTAT
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
11837530 GAGTTCTTTTATAACTTC-GTTC
194 GAGTTCTTTTATAACTTCGGTTC
* * * * * *
11837552 CTTAAACTATTCAAGACGATCAATTCCTTCGAGTAATTTTCTGAGCAATCCATTCTCGAGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
* ** *
11837617 GCATCATTTGGTCTAAATAGTTCGTTGTTTTGTAAACAACTTTTGGTCTTTGAA-T----ACTTT
66 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * *
11837677 TTTACAAGAGAAGTT-TTTCTCTCTTGGTTCTTGGTCGAGCTTCCGAACTTGTTAAACTTTTACG
131 TTTACGTGAGAA-TTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
* *
11837741 AGTTC-TTTATAACTTCGATTA
195 AGTTCTTTTATAACTTCGGTTC
* * * * * *
11837762 CTGAAAGTATTTAAGATGATCCATTCCTTCAAGCAATTTT-TGAAACATTCAATGCTCGAGATAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AACATTCCATGCTCGAGAAAT
11837826 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTT
65 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * ** * **
11837890 TTTTTCGTGAGAACTGTTTCTCTATTGGATCTTCTCCAAACTTTTGAACCTT-TCAAACTTTTAC
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAA-CTTGTCAAACTTTTAC
* * *
11837954 -ATGTTCTTTGATAATTTCAGTTC
194 GA-GTTCTTTTATAACTTCGGTTC
* * * *
11837977 CTTAAAGTATTCAAGACGATCCGTTCCTTCGAGAAATTTTTTGAACATTTCATGCT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT
11838033 TGGAAAATTG
Statistics
Matches: 3482, Mismatches: 582, Indels: 170
0.82 0.14 0.04
Matches are distributed among these distances:
209 27 0.01
210 152 0.04
211 1 0.00
213 7 0.00
214 330 0.09
215 903 0.26
216 1681 0.48
217 194 0.06
218 107 0.03
219 77 0.02
220 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTC
Found at i:11836378 original size:431 final size:430
Alignment explanation
Indices: 11833669--11838032 Score: 4738
Period size: 431 Copynumber: 10.1 Consensus size: 430
11833659 GGGTGTTACA
* * *
11833669 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCAATGCTCAGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* * * * * * *
11833734 ACATCTTTTTGTCTAAATATTTTTTCATTTTGTAAACAACTTTTGGT-TTTTAAGTTAAAAAGTT
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTT
** * * *
11833798 ATTTTTGTGAGAATTATTTCTCTCTTGGTTCTTTGTCGAACTTCCAAACTTTTCAAACTTTTACG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACG
* * ** * * ** * ** * *
11833863 ATTTGTTTT-TAACTTTTGTTCCTTAAACTGTTCAAGGCGGTCCATTCCTTATAGAAAATTTCT-
194 AGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTG
* * * * **
11833926 AATCATTCCATGCTC-AGTAAATCACATCATTTGGTCTATATAGTTT-TCCATTTCGTTCACAAC
259 AA-CATTTCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAC
* * ** *
11833989 TTTAGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTAACTCTTGCTTCTTGGCCGAAC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* * * **
11834054 TTCCGAACATGTCAAACTTTTACGA-TT-TTTTCATAATTTTTTTC
386 TTCCAAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGTTC
* * * ** **
11834098 CTAAAAGTATTCAAGACAATCCATTCCTTCAAGCAATTTTCCTTACATTCCATGCTCAAGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATC
* * * * ** * *
11834163 GCATCATTTGGTCTAGAAAAG-TTGTCATTATCTAAAAAACAATTGGTCTTTGAATAAAAAATTT
65 GCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
11834227 ATTTACGTGAGAATTCTTTCTCTCTTGGATCTTGGTCGAACTTCTAAACTTTTCAAAATTTTACA
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACG
**
11834292 AGTTCTTTTATAACTT-TTTCTCCTTAAAGTATTCAAGACT-ATCCATTCCTTCGAGCAATTTTC
194 AGTTCTTTTATAACTTAGGT-TCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGAGCAATTTTC
* * *
11834355 TGAAC-GTTCAATGCTCGAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
257 TGAACATTTC-ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * ** *
11834419 TTTTTGTCTTTAAATTAAAAACTTATTTTCATGAGAATTGTTTCTCTCTTGGTTCGTAACTG-AC
321 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* * * * *
11834483 ATTTCAAACTTGTCAGACTTTTACAAGTACTTTTTTAACTTCGGTTC
386 -TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTC
* * *
11834530 CTTAAAGCAATCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* **
11834595 GCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTTATCTTTGAATTAAAAACTTA
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
11834660 TTTTCGTGAGAATTGTTTATGTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTATTAC-A
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGA
** * *
11834724 TGTTCTTTTATAACTTTTGTTCTTTAAGGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TC
195 -GTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT-
* * * * *
11834788 GAACATTTAATGCTCGGGAAATCGTATCTTTTGGTCTAAATAGTTTGCCATTTTGTACAA-AACT
258 GAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAACT
* * *
11834852 TTAGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGTCGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * *
11834917 TCCAAACTTGTAAAAGTTTTATGAGTTTTTTTATAACTTTGTTC
387 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTC
* * * * * *
11834961 CGTAAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTATGAACATTCCATTCTCTGAAAAT
1 C-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAAT
* *
11835026 CGCATCATTTGTTCTAAATAGTTTGTCGTTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
64 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
11835091 -TTTACATAAGAATT-TTCTCTCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAAATTTTAC
129 ATTTACGTGAGAATTATT-TCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTAC
* * * ** *
11835154 AAGTTCTTTTACAACTTCA-GTTCCTTAGAGTATTCATCAAGACAATCCAATCCTTCGAGCAATT
193 GAGTTCTTTTATAACTT-AGGTTCCTTAAAGTA-T--TCAAGATGATCCATTCCTTCGAGCAATT
* * * *
11835218 TTCTGAACA-TTCAATGCTCAAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAAG
254 TTCTGAACATTTC-ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
11835282 AACTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
318 AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
* * * *
11835347 AGA-TTTCTAACTTGTCAAACTTTTA-TAGGTACTTTTATAACTTCGATTC
383 A-ACTTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCG-TTC
* * * * * *
11835396 CTTAAAGTATTCAAGACTATCAATTCCCTCGAGCAATTTTCGAAACATTCAATGCTCGAGATATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCG-AACATTCCATGCTCGGGAAATC
** * **
11835461 AAATCATTTGGTCTAAATAGTTTATCATTTCATAAA-ACACTTTTGGTCTTTGAATTAAAAACTT
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
11835525 ATTTACGTGAGAATTGTTTCTCTATTTGTTCCTAGCCGAGA-TTTCGAACTTGTCAAACTTTTAC
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGA-ACTTCCAAACTTGTCAAACTTTTAC
* * **
11835589 GAGTTATTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTTTAAGCAATTTTC
193 GAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTC-CTTCGAGCAATTTTC
* * * * * * *
11835654 TGAACACTCCATGCTCGGGAAATCGCATTATTTGGTCTAAATAGTTCGTAATTTTGTAAAAAACT
257 TGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
11835719 TTTGGTCTTTGAATTAAAAACGTATTTTCATGAGAATTGTTTCTCTCTTGGCTCTTGGCC-ATAC
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGA-AC
* *** * * *
11835783 ATGTGAACTTGTCAAACTTTTAAGAGTTCATTTATAACTTTTGTTC
386 TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGTTC
* ** * *
11835829 CTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTAAATGC-AGGAGGAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGG-GAAAT
* * * * ** *
11835893 CGTATCATTTGGTCTAAATAGTTTGTCATTTCGCAGACAACTTTTGCCCTTTGAATTAAAAATTT
64 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
** * * *
11835958 ATTTACGTGAGAATTATTTCTCTCTTGCATCTTAGCCGAACTTCCAAACTTTTCAAACTTTTACA
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACG
* * * * * * * *
11836023 AGTTATTCTATAACTTGGGTT-CTATAAGGTATTCAAGATAATCCTTTCCTTTGAGTAA-TTTCT
194 AGTTCTTTTATAACTTAGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * *
11836086 CGAACTTTTCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACT
258 -GAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
11836151 TTTGGACTATGAATTAAAAACTTATTTACGTGAGAATTGTTTATCTCTTCGTTCTTGGTCGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
*
11836216 TCCAAACTTGTCCAACTTTTACGAGTTCTTTTATAACTTCGTTC
387 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTC
* * *
11836260 CTTAAAGTATTCAAGACGATCCATTCCTTCAAGTAATTTTCGGAACATTCCATTCTCGGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATC
* *
11836325 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAATACTTA
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * * * *
11836390 TTTACAAGAGAATTTTTTCTCTCTTGGTGCTTGGTCGAACTTCCGAACTTGTCAAACTTTTAGGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGA
* * *
11836455 GTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATTTTTTGA
195 GTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGA
* * * * * *
11836519 ACATTCCATGCTCGGGAAATTGCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAATAACATTT
260 ACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
** * * ***
11836584 GGTCTTTGAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGATGTTGTTTGAACTTCT
325 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC-
* *
11836649 TAACCTT-TCAAACTTTTAC-ATGTTCTTTTATAACTTCAGTTC
389 CAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTC-GTTC
* * * * * * * *
11836691 CTTAAAGTATTTAAGACGATTCGTTCCTTCGAGAAATTTTTCGAACATTTCATGGTCTGGAAATT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* * * *
11836756 GCATCAGTTGGTCTAAATAGTTTATCTTTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTA
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
11836821 TGTACGTGAGAATTATTACTCTCTTGGTTCCTGGCTGAACTCCCAAGCTTGTCAAACTTTTACTA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGA
* * *
11836886 GTTC-TTTATAACTTAGGTTCCTTAAAGTATTCAAGAAGATCCATTCGTTCGAGCAATTTCCTGA
195 GTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGA
* *
11836950 ACATTCCATGCTCGAGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
260 ACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
11837015 TGTCTTTAAAATAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGCCGAACTTCC
325 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
* * * *
11837080 GAACTTG-CCAACTTTTTATGAGTTCTTTTATAACTTCAATTC
390 AAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTC-GTTC
11837122 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* *
11837187 GCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTTA
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
11837252 TTGACGTGAGAATTGTTTCTCTGTTTGTTCTTGGCCGAGA-TTTCAAACTTGTTAAACTTTTACG
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGA-ACTTCCAAACTTGTCAAACTTTTACG
* * * ** * *
11837316 AGTTATTTTATAACTTAAGTTCCTTAAAATATTCAAGACAATCCATTCCTTTGAGTAATTTTCT-
194 AGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTG
* * * *
11837380 AAAATTTTCATGCTC-AGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTGGTAAATAACT
259 AACA-TTTCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
11837444 TTTGGACTATGAATTAAACACTTATTTACGTGAGAATT-TTTTTCTCTTCGTTCTTGGCCGAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * *
11837508 TCCGAACTTGTCCAACTTTTATGAGTTCTTTTATAACTTCGTTC
387 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTC
* * * * * * *
11837552 CTTAAACTATTCAAGACGATCAATTCCTTCGAGTAATTTTCTGAGCAATCCATTCTCGAGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATC
* ** *
11837617 GCATCATTTGGTCTAAATAGTTCGTTGTTTTGTAAACAACTTTTGGTCTTTGAA-T----ACTTT
65 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * * *
11837677 TTTACAAGAGAAGTT-TTTCTCTCTTGGTTCTTGGTCGAGCTTCCGAACTTGTTAAACTTTTACG
130 TTTACGTGAGAA-TTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACG
* * * * * *
11837741 AGTTC-TTTATAACTTCGATTACTGAAAGTATTTAAGATGATCCATTCCTTCAAGCAATTTT-TG
194 AGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTG
*
11837804 AAACA-TTCAATGCTCGAGATATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
259 -AACATTTC-ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * ** *
11837868 TTTGGTCTTTGAATT-AAAACTTTTTTTCGTGAGAACTGTTTCTCTATTGGATCTTCTCCAAACT
322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-
** * * *
11837932 TTTGAACCTT-TCAAACTTTTAC-ATGTTCTTTGATAATTTCAGTTC
386 TTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTC-GTTC
* * * *
11837977 CTTAAAGTATTCAAGACGATCCGTTCCTTCGAGAAATTTTTTGAACATTTCATGCT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCT
11838033 TGGAAAATTG
Statistics
Matches: 3304, Mismatches: 548, Indels: 170
0.82 0.14 0.04
Matches are distributed among these distances:
423 23 0.01
424 148 0.04
425 114 0.03
426 6 0.00
428 4 0.00
429 169 0.05
430 461 0.14
431 873 0.26
432 769 0.23
433 364 0.11
434 288 0.09
435 82 0.02
436 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (430 bp):
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCG
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAA
CATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCA
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTC
Found at i:11838911 original size:32 final size:32
Alignment explanation
Indices: 11838870--11838936 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
11838860 TAGGACTATT
* * *
11838870 CTTTAACTGCTCCTTTTGCATTGCATCGAGCA
1 CTTTAACTGCTCCTCTTGCATTACATCAAGCA
*
11838902 CTTTAACTGCTCCTCTTGCGTTACATCAAGCA
1 CTTTAACTGCTCCTCTTGCATTACATCAAGCA
11838934 CTT
1 CTT
11838937 CTCGTTAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.37
Consensus pattern (32 bp):
CTTTAACTGCTCCTCTTGCATTACATCAAGCA
Done.