Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 45 of 120
Found at i:12527708 original size:27 final size:24
Alignment explanation
Indices: 12527651--12527708 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
12527641 TAGAATGGTT
* * *
12527651 AGCTCTTACGAGCCCAGAATAATT
1 AGCTCTTACAAGCCCAAAATAATA
12527675 AGCTCTTACAAGCCCAAAATCAGATA
1 AGCTCTTACAAGCCCAAAAT-A-ATA
12527701 ACGCTCTT
1 A-GCTCTT
12527709 TTGAGCCAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 18 0.64
25 1 0.04
26 3 0.11
27 6 0.21
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (24 bp):
AGCTCTTACAAGCCCAAAATAATA
Found at i:12527715 original size:27 final size:27
Alignment explanation
Indices: 12527692--12527781 Score: 137
Period size: 27 Copynumber: 3.4 Consensus size: 27
12527682 ACAAGCCCAA
12527692 AATCAG-ATAACGCTCTTTTGAGCCAG
1 AATCAGAATAACGCTCTTTTGAGCCAG
* *
12527718 AATCAGAATTACGCTCTTTTGAGCTAG
1 AATCAGAATAACGCTCTTTTGAGCCAG
**
12527745 AATCAGAATAACGCTCTTTTGAGCTTG
1 AATCAGAATAACGCTCTTTTGAGCCAG
12527772 AATCAGAATA
1 AATCAGAATA
12527782 CTCCTCAATC
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 6 0.10
27 53 0.90
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (27 bp):
AATCAGAATAACGCTCTTTTGAGCCAG
Found at i:12535199 original size:17 final size:17
Alignment explanation
Indices: 12535164--12535201 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
12535154 TAATGTGAAA
*
12535164 ACAATTAAAATGCAGTG
1 ACAATTAAAATGCAATG
*
12535181 ACAATTAAAATGTAATG
1 ACAATTAAAATGCAATG
12535198 ACAA
1 ACAA
12535202 CTAGGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.13, T:0.24
Consensus pattern (17 bp):
ACAATTAAAATGCAATG
Found at i:12554373 original size:32 final size:32
Alignment explanation
Indices: 12554332--12554394 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
12554322 AGCTAAAATT
* *
12554332 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
*
12554364 AATTCGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
12554395 TATAGATGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:12555455 original size:14 final size:14
Alignment explanation
Indices: 12555436--12555470 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
12555426 AGTTCTTGAA
12555436 AAAAAAAATTCGTG
1 AAAAAAAATTCGTG
*
12555450 AAAAAAAATTCGTT
1 AAAAAAAATTCGTG
12555464 AAAAAAA
1 AAAAAAA
12555471 GAGAATAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (14 bp):
AAAAAAAATTCGTG
Found at i:12557691 original size:13 final size:14
Alignment explanation
Indices: 12557672--12557710 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
12557662 GCAAAGAAAG
12557672 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
12557686 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
12557699 TGAAAAGGAAGA
1 TGAAAAGAAAGA
12557711 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:12571300 original size:24 final size:25
Alignment explanation
Indices: 12571273--12571330 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
12571263 TGGGAATAAG
* *
12571273 ATTCAAAGATTTTTTTTATACA-AC
1 ATTCAAAGATTTTTTTGAGACATAC
* * *
12571297 ATTCAGATATTTTTTTGAGATATAC
1 ATTCAAAGATTTTTTTGAGACATAC
12571322 ATTCAAAGA
1 ATTCAAAGA
12571331 AAATTTAAAG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (25 bp):
ATTCAAAGATTTTTTTGAGACATAC
Found at i:12571602 original size:19 final size:18
Alignment explanation
Indices: 12571565--12571605 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
12571555 TTGACTTTTA
*
12571565 ATTTATTGATTTTTGTTT
1 ATTTATTGATTTTTATTT
*
12571583 ATTTATTTATTTTTCATTT
1 ATTTATTGATTTTT-ATTT
12571602 ATTT
1 ATTT
12571606 TCATACCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (18 bp):
ATTTATTGATTTTTATTT
Found at i:12571767 original size:28 final size:26
Alignment explanation
Indices: 12571717--12571775 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
12571707 TTTCATGACA
*
12571717 TATTATTATTATTTATTTAATTTGTATT
1 TATTTTTATTATTTATTTAA-TT-TATT
*
12571745 TATTTTTATTATCTTGTTT-ATTTATT
1 TATTTTTATTAT-TTATTTAATTTATT
12571771 TATTT
1 TATTT
12571776 ATCATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 9 0.32
27 2 0.07
28 12 0.43
29 5 0.18
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (26 bp):
TATTTTTATTATTTATTTAATTTATT
Found at i:12572096 original size:29 final size:29
Alignment explanation
Indices: 12572007--12572097 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
12571997 TATTGCTTAT
* *
12572007 ATTATTAAT-TAATTA-ATATTTATTGTC
1 ATTAATAATATAATTATATTTTTATTGTC
* * * *
12572034 ATTATTAATATGATTATATTGTTATT-TT
1 ATTAATAATATAATTATATTTTTATTGTC
*
12572062 ATTTAATACTATAATTATATTTTTATTGTC
1 A-TTAATAATATAATTATATTTTTATTGTC
12572092 ATTAAT
1 ATTAAT
12572098 TGTTATTAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
27 9 0.18
28 7 0.14
29 33 0.65
30 2 0.04
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (29 bp):
ATTAATAATATAATTATATTTTTATTGTC
Found at i:12574449 original size:15 final size:15
Alignment explanation
Indices: 12574431--12574463 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
12574421 CATCTCTCAC
12574431 GATGA-TATCTATGAA
1 GATGAGTAT-TATGAA
12574446 GATGAGTATTATGAA
1 GATGAGTATTATGAA
12574461 GAT
1 GAT
12574464 TGGGGGATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.33
Consensus pattern (15 bp):
GATGAGTATTATGAA
Found at i:12576174 original size:23 final size:22
Alignment explanation
Indices: 12576143--12576186 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
12576133 AAAGAAATAA
*
12576143 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
12576165 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
12576187 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:12593763 original size:23 final size:22
Alignment explanation
Indices: 12593732--12593775 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
12593722 GCAGAAATAA
*
12593732 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
12593754 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
12593776 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:12612248 original size:51 final size:52
Alignment explanation
Indices: 12612148--12612256 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 52
12612138 ATAGAAATGG
* **
12612148 TGAAAATGGAGAAATGAGAAACATTTGGAAACAAATGTGGTTTTATCCAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGGAAACAAACGTAATTTTATCCAAAA
* ** *
12612200 TGAAAATGGAGAAATTA-AAACATTTGGAAATGAACGTAATTTTCTCCAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGGAAACAAACGTAATTTTATCCAAAA
12612251 TGAAAA
1 TGAAAA
12612257 AAGAAAAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 34 0.68
52 16 0.32
ACGTcount: A:0.48, C:0.08, G:0.18, T:0.26
Consensus pattern (52 bp):
TGAAAATGGAGAAATGAGAAACATTTGGAAACAAACGTAATTTTATCCAAAA
Found at i:12620156 original size:2 final size:2
Alignment explanation
Indices: 12620149--12620186 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
12620139 GGTCAAAGTA
*
12620149 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AA AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12620187 TGGTGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12621390 original size:17 final size:17
Alignment explanation
Indices: 12621368--12621401 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
12621358 GATTGATATG
* *
12621368 GAAAATGTTTTTGAAAT
1 GAAAATGCTATTGAAAT
12621385 GAAAATGCTATTGAAAT
1 GAAAATGCTATTGAAAT
12621402 AGAGAGTGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (17 bp):
GAAAATGCTATTGAAAT
Found at i:12628805 original size:17 final size:17
Alignment explanation
Indices: 12628783--12628816 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
12628773 GGTTGATATG
*
12628783 GAAAATATTATTGAAAT
1 GAAAATACTATTGAAAT
*
12628800 GAAAATGCTATTGAAAT
1 GAAAATACTATTGAAAT
12628817 AACAAGTGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.32
Consensus pattern (17 bp):
GAAAATACTATTGAAAT
Found at i:12630925 original size:22 final size:22
Alignment explanation
Indices: 12630898--12630944 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
12630888 GACTTCCCTA
12630898 TTTTCTATT-TCTTTCAATTCTG
1 TTTTCTATTATCTTTC-ATTCTG
* *
12630920 TTTTCTTTTATTTTTCATTCTG
1 TTTTCTATTATCTTTCATTCTG
12630942 TTT
1 TTT
12630945 CTTTTGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTTCTATTATCTTTCATTCTG
Found at i:12630955 original size:22 final size:23
Alignment explanation
Indices: 12630909--12630956 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
12630899 TTTCTATTTC
12630909 TTTCAATTCTGTTTTCTTTTATT
1 TTTCAATTCTGTTTTCTTTTATT
*
12630932 TTTC-ATTCTG-TTTCTTTTGTT
1 TTTCAATTCTGTTTTCTTTTATT
12630953 TTTC
1 TTTC
12630957 CTCAGATCGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 14 0.58
22 6 0.25
23 4 0.17
ACGTcount: A:0.08, C:0.15, G:0.06, T:0.71
Consensus pattern (23 bp):
TTTCAATTCTGTTTTCTTTTATT
Found at i:12641024 original size:18 final size:17
Alignment explanation
Indices: 12640977--12641025 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
12640967 ATTTACAGGT
12640977 ATAAATAATAAGAAAACA
1 ATAAATAATAA-AAAACA
* *
12640995 ATATATACATAAAATACA
1 ATAAATA-ATAAAAAACA
12641013 ATAAGATAATAAA
1 ATAA-ATAATAAA
12641026 TTGAGTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.22
Consensus pattern (17 bp):
ATAAATAATAAAAAACA
Found at i:12641114 original size:3 final size:3
Alignment explanation
Indices: 12641106--12641140 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
12641096 AAAGGGATTA
12641106 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
12641141 CAAGATAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:12641248 original size:30 final size:30
Alignment explanation
Indices: 12641212--12641357 Score: 179
Period size: 30 Copynumber: 4.9 Consensus size: 30
12641202 ACATTAAAAC
*
12641212 GGGTCAAATTTGAATTTTTGGAAGGTTTGA
1 GGGTCAAATTTGAATTTTTGGAAAGTTTGA
12641242 GGGTCAAATTTGAATTTTTGGAAAGTTTG-
1 GGGTCAAATTTGAATTTTTGGAAAGTTTGA
** *
12641271 GGGTTCAAATTCAAATTTTTGGAAAATTT-A
1 GGG-TCAAATTTGAATTTTTGGAAAGTTTGA
* * **
12641301 GGAGTCAATTTTGAATTTTTAGAAAGTTCAA
1 GG-GTCAAATTTGAATTTTTGGAAAGTTTGA
*
12641332 GGGTCAAATTTGAATTTTTTGAAAGT
1 GGGTCAAATTTGAATTTTTGGAAAGT
12641358 GTGGGGGTTA
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.03
30 93 0.93
31 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTGGAAAGTTTGA
Found at i:12641378 original size:90 final size:90
Alignment explanation
Indices: 12641214--12641378 Score: 226
Period size: 90 Copynumber: 1.8 Consensus size: 90
12641204 ATTAAAACGG
* * ** *
12641214 GTCAAATTTGAATTTTTGGAAGGTTTGAGGGTCAAATTTGAATTTTTGGAAAGTTTGGGGTTCAA
1 GTCAAATTTGAATTTTTAGAAAGTTCAAGGGTCAAATTTGAATTTTTGGAAAGTTGGGGGTTCAA
*
12641279 ATTCAAATTTTTGGAAAATTTAGGA
66 ATGCAAATTTTTGGAAAATTTAGGA
* *
12641304 GTCAATTTTGAATTTTTAGAAAGTTCAAGGGTCAAATTTGAATTTTTTGAAAGTGTGGGGGTT-A
1 GTCAAATTTGAATTTTTAGAAAGTTCAAGGGTCAAATTTGAATTTTTGGAAAGT-TGGGGGTTCA
12641368 AA-GCATAATTT
65 AATGCA-AATTT
12641379 CGAAATAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
89 2 0.03
90 56 0.86
91 7 0.11
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.40
Consensus pattern (90 bp):
GTCAAATTTGAATTTTTAGAAAGTTCAAGGGTCAAATTTGAATTTTTGGAAAGTTGGGGGTTCAA
ATGCAAATTTTTGGAAAATTTAGGA
Found at i:12642826 original size:36 final size:36
Alignment explanation
Indices: 12642777--12642890 Score: 147
Period size: 36 Copynumber: 3.2 Consensus size: 36
12642767 GTGAAAGTGG
* *
12642777 ATATGTGAGTATGTTATTCATGCCATCTGATAGTAA
1 ATATATGAGTATGTTATTCATGCCATGTGATAGTAA
* * *
12642813 ATATATGAGTATGTTATTCATGTCATGAGACAGTAA
1 ATATATGAGTATGTTATTCATGCCATGTGATAGTAA
* * * *
12642849 ATATGTGGGTTTGTTATTCATGCCATGTGATAGTGA
1 ATATATGAGTATGTTATTCATGCCATGTGATAGTAA
12642885 ATATAT
1 ATATAT
12642891 TGTGCTAATG
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (36 bp):
ATATATGAGTATGTTATTCATGCCATGTGATAGTAA
Found at i:12643331 original size:23 final size:23
Alignment explanation
Indices: 12643277--12643346 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
12643267 ATTAAATGTG
*
12643277 TTAAAAGT-TAATGTGATTTTTGC
1 TTAAAAGTAT-ATGTGATTTATGC
12643300 TTAAAAGTATATGTGATTTATGC
1 TTAAAAGTATATGTGATTTATGC
** *
12643323 TTAAAAGTATGCGTTATTTATGC
1 TTAAAAGTATATGTGATTTATGC
12643346 T
1 T
12643347 CAAATTATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 41 0.98
24 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (23 bp):
TTAAAAGTATATGTGATTTATGC
Found at i:12652026 original size:29 final size:29
Alignment explanation
Indices: 12651957--12652352 Score: 186
Period size: 29 Copynumber: 13.6 Consensus size: 29
12651947 AATGGAGTCA
* *
12651957 AAAAT-GTAATTTTTGGATGCT-G-GGGG
1 AAAATGGTAATTTTTGGATGTTCGAGGGT
* * *
12651983 CAAACGATAATTTTTGGATGTTCGAGGGT
1 AAAATGGTAATTTTTGGATGTTCGAGGGT
* * *** *
12652012 AAAACGGTAATTTTTTGA-CACCCATGGGT
1 AAAATGGTAATTTTTGGATGTTCGA-GGGT
* ** ***
12652041 AAAACGGTAATTTTTTTACACTCGAGGGT
1 AAAATGGTAATTTTTGGATGTTCGAGGGT
* * *
12652070 AAAATGGTAATTTTTGGAATGTTTGGGGGCA
1 AAAATGGTAATTTTTGG-ATGTTCGAGGG-T
* *
12652101 AAAAT-GTAATTTTTGGATATTTGAGGGT
1 AAAATGGTAATTTTTGGATGTTCGAGGGT
* *
12652129 AAAATGGTAATGTTTGGATGTTCGGGGGT
1 AAAATGGTAATTTTTGGATGTTCGAGGGT
* * * *
12652158 AAAATGGTAATTTTTGGAAAGTT-TAAGAT
1 AAAATGGTAATTTTTGG-ATGTTCGAGGGT
**
12652187 CAAAAAT-GTAATTTTTGGA-AATCTGAGGGT
1 --AAAATGGTAATTTTTGGATGTTC-GAGGGT
* * *
12652217 AAAACT-ATAATTTTTGGAAAGTTTG-GGGT
1 AAAA-TGGTAATTTTTGG-ATGTTCGAGGGT
* ** *
12652246 CAAAAAT-GAAACTTTTTGGACATTCAAGGGT
1 --AAAATGGTAA-TTTTTGGATGTTCGAGGGT
* * *
12652277 AAAATGGAAATTTTTGGAAAGTT-AAGGGT
1 AAAATGGTAATTTTTGG-ATGTTCGAGGGT
* **
12652306 CAAAAAGGTAATTTTTGGACATTCGAGGGT
1 -AAAATGGTAATTTTTGGATGTTCGAGGGT
12652336 AAAATGGTAATCTTTTG
1 AAAATGGTAAT-TTTTG
12652353 AAATTTTGGG
Statistics
Matches: 283, Mismatches: 62, Indels: 46
0.72 0.16 0.12
Matches are distributed among these distances:
26 3 0.01
27 14 0.05
28 13 0.05
29 150 0.53
30 77 0.27
31 26 0.09
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGATGTTCGAGGGT
Found at i:12652132 original size:88 final size:88
Alignment explanation
Indices: 12652037--12652377 Score: 271
Period size: 88 Copynumber: 3.8 Consensus size: 88
12652027 TGACACCCAT
** * ** *
12652037 GGGTAAAACGGTAATTTTTTTACACTCGAGGGTAAAATGGTAATTTTTGGAATGTTTGGGGGCAA
1 GGGTAAAACGGTAATTTTTGGACACTCGAGGGTAAAATGGTAATTTTTGGAAAGTTTAAGAGCAA
* *
12652102 AAATGTAATTTTTGGATATTTGA
66 AAATGTAATTTTTGGAAATCTGA
* * *** * *
12652125 GGGTAAAATGGTAATGTTTGGATGTTCGGGGGTAAAATGGTAATTTTTGGAAAGTTTAAGATCAA
1 GGGTAAAACGGTAATTTTTGGACACTCGAGGGTAAAATGGTAATTTTTGGAAAGTTTAAGAGCAA
12652190 AAATGTAATTTTTGGAAATCTGA
66 AAATGTAATTTTTGGAAATCTGA
** * * * * * *
12652213 GGGTAAAACTATAATTTTTGGAAAGTTTG-GGGTCAAAAAT-GAAACTTTTTGGACA-TTCAAG-
1 GGGTAAAACGGTAATTTTTGGACA-CTCGAGGGT--AAAATGGTAA-TTTTTGGAAAGTTTAAGA
** * *
12652274 GGTAAAATGGAAATTTTTGGAAAGT-TAA
62 GCAAAAAT-GTAATTTTTGGAAA-TCTGA
* * * **
12652302 GGGTCAAAAAGGTAATTTTTGGACATTCGAGGGTAAAATGGTAATCTTTT-GAAATTTTGGGAGC
1 GGGT-AAAACGGTAATTTTTGGACACTCGAGGGTAAAATGGTAAT-TTTTGGAAAGTTTAAGAGC
12652366 AAAAATGGTAAT
64 AAAAAT-GTAAT
12652378 CTTAGATGTT
Statistics
Matches: 198, Mismatches: 43, Indels: 22
0.75 0.16 0.08
Matches are distributed among these distances:
88 109 0.55
89 43 0.22
90 46 0.23
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (88 bp):
GGGTAAAACGGTAATTTTTGGACACTCGAGGGTAAAATGGTAATTTTTGGAAAGTTTAAGAGCAA
AAATGTAATTTTTGGAAATCTGA
Found at i:12652217 original size:59 final size:58
Alignment explanation
Indices: 12652129--12652534 Score: 263
Period size: 59 Copynumber: 6.9 Consensus size: 58
12652119 ATTTGAGGGT
* ** *
12652129 AAAATGGTAATGTTTGGATGTTCGGGGGTAAAATGGTAATTTTTGGAAAGTTTAAGATCA
1 AAAAT-GTAATTTTTGGAAATTCGAGGGTAAAAT-GTAATTTTTGGAAAGTTTAAGATCA
* ** *
12652189 AAAATGTAATTTTTGGAAA-TCTGAGGGTAAAACTATAATTTTTGGAAAGTTTGGGGTCA
1 AAAATGTAATTTTTGGAAATTC-GAGGGTAAAA-TGTAATTTTTGGAAAGTTTAAGATCA
* * * * *
12652248 AAAATGAAACTTTTTGGACATTCAAGGGTAAAATGGAAATTTTTGGAAAG-TTAAGGGTCA
1 AAAATGTAA-TTTTTGGAAATTCGAGGGTAAAAT-GTAATTTTTGGAAAGTTTAA-GATCA
* * * ** *
12652308 AAAAGGTAATTTTTGGACATTCGAGGGTAAAATGGTAATCTTTT-GAAATTTTGGGAGCA
1 AAAATGTAATTTTTGGAAATTCGAGGGTAAAAT-GTAAT-TTTTGGAAAGTTTAAGATCA
* * ** * * * * * *
12652367 AAAATGGTAA-TCTTAGATGTTCG-GGAGCAAAAATGTGATTTTTGAAAAGTTCAAGGTTA
1 AAAAT-GTAATTTTTGGAAATTCGAGG-G-TAAAATGTAATTTTTGGAAAGTTTAAGATCA
* * * ** *
12652426 AAAAT-AATATTTTTGGAAGTT-TAGGGGTAAAAATGTAATTTTTGG-AAGTTTGGGAGCA
1 AAAATGTA-ATTTTTGGAAATTCGA-GGGT-AAAATGTAATTTTTGGAAAGTTTAAGATCA
* *
12652484 AAAATGTAATTTTTGAGAAGTTTGAGGGTCAAAATGTAA-TTTTGGAAAGTT
1 AAAATGTAATTTTTG-GAAATTCGAGGGT-AAAATGTAATTTTTGGAAAGTT
12652535 CGGGGTCAAA
Statistics
Matches: 269, Mismatches: 56, Indels: 43
0.73 0.15 0.12
Matches are distributed among these distances:
57 1 0.00
58 34 0.13
59 165 0.61
60 67 0.25
61 2 0.01
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAATTCGAGGGTAAAATGTAATTTTTGGAAAGTTTAAGATCA
Found at i:12652278 original size:119 final size:119
Alignment explanation
Indices: 12652154--12652372 Score: 304
Period size: 119 Copynumber: 1.8 Consensus size: 119
12652144 GGATGTTCGG
* *
12652154 GGGTAAAATGGTAATTTTTGGAAAGTTTAA-GATCAAAAATGTAATTTTTGGAAA-TCTGAGGGT
1 GGGTAAAATGGAAATTTTTGGAAAG-TTAAGGATCAAAAAGGTAATTTTTGGAAATTC-GAGGGT
12652217 AAAACT-ATAAT-TTTTGGAAAGTTTGGG-GTCAAAAATGAAACTTTTTGGACATTCAA
64 AAAA-TGATAATCTTTT-GAAAGTTTGGGAG-CAAAAATGAAACTTTTTGGACATTCAA
* *
12652273 GGGTAAAATGGAAATTTTTGGAAAGTTAAGGGTCAAAAAGGTAATTTTTGGACATTCGAGGGTAA
1 GGGTAAAATGGAAATTTTTGGAAAGTTAAGGATCAAAAAGGTAATTTTTGGAAATTCGAGGGTAA
* *
12652338 AATGGTAATCTTTTGAAATTTTGGGAGCAAAAATG
66 AATGATAATCTTTTGAAAGTTTGGGAGCAAAAATG
12652373 GTAATCTTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
118 5 0.06
119 77 0.87
120 7 0.08
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.33
Consensus pattern (119 bp):
GGGTAAAATGGAAATTTTTGGAAAGTTAAGGATCAAAAAGGTAATTTTTGGAAATTCGAGGGTAA
AATGATAATCTTTTGAAAGTTTGGGAGCAAAAATGAAACTTTTTGGACATTCAA
Found at i:12652518 original size:88 final size:86
Alignment explanation
Indices: 12652062--12652555 Score: 262
Period size: 88 Copynumber: 5.6 Consensus size: 86
12652052 TTTTTTACAC
** * *
12652062 TCGAGGGTAAAATGGTAATTTTTGGAATGTTTGGGGGCAAAAATGTAATTTTTGGATA-TTTGAG
1 TCGAGGGTAAAATAATAATTTTTGGAA-GTTTAGGGGTAAAAATGTAATTTTTGGA-AGTTTG-G
* * *
12652126 GG-TAAAATGGTAATGTTTGGATGT
63 GGCAAAAAT-GTAATTTTTGGAAGT
* ** * * * *
12652150 TCGGGGGTAAAATGGTAATTTTTGGAAAGTTTA-AGATCAAAAATGTAATTTTTGGAAATCTGAG
1 TCGAGGGTAAAATAATAATTTTTGG-AAGTTTAGGGGT-AAAAATGTAATTTTTGGAAGTTTG-G
* * *
12652214 GGTAAAACTATAATTTTTGGAAAGT
63 GGCAAAAATGTAATTTTTGG-AAGT
* * * * *
12652239 TTG-GGGTCAAAAATGAA-ACTTTTTGGACA-TTCAAGGGT-AAAATGGAAATTTTTGGAAAGTT
1 TCGAGGGT--AAAAT-AATAATTTTTGGA-AGTTTAGGGGTAAAAAT-GTAATTTTTGG-AAGTT
* * *
12652300 AAGGGTCAAAAAGGTAATTTTTGGACA-T
60 -TGGGGCAAAAATGTAATTTTTGGA-AGT
** * * * * * * *
12652328 TCGAGGGTAAAATGGTAATCTTTT-GAAATTTTGGGAGCAAAAATGGTAA-TCTTAGATGTTCGG
1 TCGAGGGTAAAATAATAAT-TTTTGGAAGTTTAGGG-GTAAAAAT-GTAATTTTTGGAAGTTTGG
* *
12652391 GAGCAAAAATGTGATTTTTGAAAAGT
63 G-GCAAAAATGTAATTTTTG-GAAGT
* *
12652417 TCAAGGTTAAAAATAAT-ATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTGGAAGTTTGGGA
1 TCGAGGGT-AAAATAATAATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTGGAAGTTTGGG-
12652481 GCAAAAATGTAATTTTTGAGAAGT
64 GCAAAAATGTAATTTTTG-GAAGT
* * * * *
12652505 TTGAGGGTCAAAAT-GTAA-TTTTGGAAAG-TTCGGGGT-CAAATGCAATTTTTG
1 TCGAGGGT-AAAATAATAATTTTTGG-AAGTTTAGGGGTAAAAATGTAATTTTTG
12652556 AATGTTCAAG
Statistics
Matches: 313, Mismatches: 65, Indels: 58
0.72 0.15 0.13
Matches are distributed among these distances:
86 13 0.04
87 24 0.08
88 163 0.52
89 57 0.18
90 55 0.18
91 1 0.00
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.35
Consensus pattern (86 bp):
TCGAGGGTAAAATAATAATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTGGAAGTTTGGGGC
AAAAATGTAATTTTTGGAAGT
Found at i:12652554 original size:28 final size:28
Alignment explanation
Indices: 12652066--12652593 Score: 226
Period size: 29 Copynumber: 18.0 Consensus size: 28
12652056 TTACACTCGA
12652066 GGGT-AAAATGGTAATTTTTGGAATGTTTG
1 GGGTCAAAAT-GTAATTTTTGGAA-GTTTG
*
12652095 GGGGCAAAAATGTAATTTTTGGATA-TTTG
1 GGGTC-AAAATGTAATTTTTGGA-AGTTTG
* * *
12652124 AGGGT-AAAATGGTAATGTTTGGATGTTCGG
1 -GGGTCAAAAT-GTAATTTTTGGAAGTT-TG
*
12652154 GGGT-AAAATGGTAATTTTTGGAAAGTTTA
1 GGGTCAAAAT-GTAATTTTTGG-AAGTTTG
* * * *
12652183 AGATCAAAAATGTAATTTTTGGAAATCTG
1 GGGTC-AAAATGTAATTTTTGGAAGTTTG
*
12652212 AGGGT-AAAACTATAATTTTTGGAAAGTTTG
1 -GGGTCAAAA-TGTAATTTTTGG-AAGTTTG
* **
12652242 GGGTCAAAAATGAAACTTTTTGGACA-TTCAA
1 GGGTC-AAAATGTAA-TTTTTGGA-AGTT-TG
* **
12652273 GGGT-AAAATGGAAATTTTTGGAAAGTTAA
1 GGGTCAAAAT-GTAATTTTTGG-AAGTTTG
* *
12652302 GGGTCAAAAAGGTAATTTTTGGACA-TTCG
1 GGGTC-AAAATGTAATTTTTGGA-AGTTTG
* *
12652331 AGGGT-AAAATGGTAATCTTTTGAAATTTTG
1 -GGGTCAAAAT-GTAAT-TTTTGGAAGTTTG
* * * *
12652361 GGAG-CAAAAATGGTAA-TCTTAGATGTTCG
1 GG-GTC-AAAAT-GTAATTTTTGGAAGTTTG
* * **
12652390 GGAG-CAAAAATGTGATTTTTGAAAAGTTCAA
1 GG-GTC-AAAATGTAATTTTTG-GAAGTT-TG
* * *
12652421 GGTTAAAAAT-AATATTTTTGGAAGTTTAG
1 GGGTCAAAATGTA-ATTTTTGGAAGTTT-G
*
12652450 GGGTAAAAATGTAATTTTTGGAAGTTTG
1 GGGTCAAAATGTAATTTTTGGAAGTTTG
12652478 GGAG-CAAAAATGTAATTTTTGAGAAGTTTG
1 GG-GTC-AAAATGTAATTTTTG-GAAGTTTG
*
12652508 AGGGTCAAAATGTAA-TTTTGGAAAGTTCG
1 -GGGTCAAAATGTAATTTTTGG-AAGTTTG
* **
12652537 GGGTC-AAATGCAATTTTT-GAATGTTCA
1 GGGTCAAAATGTAATTTTTGGAA-GTTTG
* *
12652564 AGGTCAAAATTGTAATTTTTGAAAGGTTTG
1 GGGTCAAAA-TGTAATTTTTGGAA-GTTTG
12652594 AGGGCCTTTT
Statistics
Matches: 388, Mismatches: 62, Indels: 97
0.71 0.11 0.18
Matches are distributed among these distances:
26 2 0.01
27 16 0.04
28 32 0.08
29 176 0.45
30 116 0.30
31 46 0.12
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
GGGTCAAAATGTAATTTTTGGAAGTTTG
Found at i:12653712 original size:3 final size:3
Alignment explanation
Indices: 12653700--12653771 Score: 67
Period size: 3 Copynumber: 23.7 Consensus size: 3
12653690 TTTCCTTTTC
* * *
12653700 TAT T-T TAT TAT TAA TAT TAT TAA TGT TA- TATT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
12653744 TATT TAT TAT TAT TAT TAC TATT TAT TA
1 TA-T TAT TAT TAT TAT TAT TA-T TAT TA
12653772 AATATGTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
2 4 0.07
3 45 0.80
4 7 0.12
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:12654446 original size:11 final size:10
Alignment explanation
Indices: 12654410--12654467 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
12654400 TGGACTTTTT
12654410 AATTTAAATA
1 AATTTAAATA
12654420 AATTTAAACTTA
1 AATTTAAA--TA
12654432 AATTTATAATA
1 AATTTA-AATA
12654443 AATTTAAAT-
1 AATTTAAATA
*
12654452 --TTCAAATA
1 AATTTAAATA
12654460 AATTTAAA
1 AATTTAAA
12654468 CCTAAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 6 0.15
10 16 0.40
11 8 0.20
12 8 0.20
13 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
AATTTAAATA
Found at i:12654449 original size:17 final size:17
Alignment explanation
Indices: 12654424--12654504 Score: 108
Period size: 17 Copynumber: 4.8 Consensus size: 17
12654414 TAAATAAATT
* *
12654424 TAAACTTAAATTTATAA
1 TAAATTTAAATTTAAAA
*
12654441 TAAATTTAAATTTCAAA
1 TAAATTTAAATTTAAAA
**
12654458 TAAATTTAAACCTAAAA
1 TAAATTTAAATTTAAAA
12654475 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
12654492 TAAACTTAAATTT
1 TAAATTTAAATTT
12654505 TATTGGGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:12655107 original size:161 final size:161
Alignment explanation
Indices: 12654933--12655276 Score: 516
Period size: 161 Copynumber: 2.2 Consensus size: 161
12654923 CTTCGACCTT
* *
12654933 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTCGCTCACTTTAAGCTTGGCTTCATTG
1 CTTCTCAGTATCTCATCAGGAAGCTGAGGTTCGAAGATTCGCTCACTTGAAGCTTGGCTTCATTG
* *
12654998 ATTTGGTCTTCTTCTCAATACCTCATCAGAAAGATGACCGCATCACTTGTTTC-ATCCCGCTTCT
66 ATTTGGTCTTCTTCTCAATACCTCACCAGAAAGATGACCGCATCACTTATTTCAAT-CCGCTTCT
* * *
12655062 CTATATCTTATCAAGAAGACGAGTTTGGTCCG
130 CTATATCTCATCAAGAAGACGAATTTGGTCCA
* * *
12655094 CTTCTCAGTATCTCATCAAGAAGCTGAGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTG
1 CTTCTCAGTATCTCATCAGGAAGCTGAGGTTCGAAGATTCGCTCACTTGAAGCTTGGCTTCATTG
* * * *
12655159 ATTTGGTCTTCTTCTCAGTATCTCACCAGGAAGATGACCGTATCACTTATTTCAATCCGCTTCTC
66 ATTTGGTCTTCTTCTCAATACCTCACCAGAAAGATGACCGCATCACTTATTTCAATCCGCTTCTC
*
12655224 TATATCTCATCAGGAAGACGAATTTGGTCCA
131 TATATCTCATCAAGAAGACGAATTTGGTCCA
12655255 CTTCT---TATCTCATCAGGAAGCT
1 CTTCTCAGTATCTCATCAGGAAGCT
12655277 AACCATTTTA
Statistics
Matches: 166, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
158 16 0.10
161 148 0.89
162 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (161 bp):
CTTCTCAGTATCTCATCAGGAAGCTGAGGTTCGAAGATTCGCTCACTTGAAGCTTGGCTTCATTG
ATTTGGTCTTCTTCTCAATACCTCACCAGAAAGATGACCGCATCACTTATTTCAATCCGCTTCTC
TATATCTCATCAAGAAGACGAATTTGGTCCA
Found at i:12655459 original size:367 final size:369
Alignment explanation
Indices: 12654784--12655459 Score: 998
Period size: 367 Copynumber: 1.8 Consensus size: 369
12654774 TGGTTTGGTG
* * * * **
12654784 TCATTGATTTGGTCCACTTCTCAGTGTCTCATCAGGAAGATGATCGCATCACTTGTTTTGATCCA
1 TCATTGATTTGGTCCACTTCTCAGTATCTCACCAGGAAGATGACCGCATCACTTATTTCAATCCA
* * * *
12654849 CTTCTCTATGTCTCATCAGGAAGACGGATCTAATTCACTCTCTGTATCTCATCAAGAAGGTAACC
66 CTTCTCTATATCTCATCAGGAAGACGAATCTAATCCACTCTCTGTATCTCATCAAGAAGCTAACC
* * * *
12654914 GCTTTATTTCTTCGACCTTCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTCGCTCAC
131 ACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTCGCTCAC
*
12654979 TTTAAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGAAAGATGACCGCATCAC
196 TTTAAGCCTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGAAAGATGACCGCATCAC
* *
12655044 TTGTTTCATCCCGCTTCTCTATATCTTATCAAGAAGACGAGTTTGGTCCGCTTCTCAGTATCTCA
261 TTGTTTCATCCCGCTTCTCTATATCTCATCAAGAAGACGAATTTGGTCCGCTTCTCAGTATCTCA
12655109 TCAAGAAGCTGAGGTTCGAAGATTTGCTCACTTGGAGCTTGGCT
326 TCAAGAAGCTGAGGTTCGAAGATTTGCTCACTTGGAGCTTGGCT
** * *
12655153 TCATTGATTTGGTCTTCTTCTCAGTATCTCACCAGGAAGATGACCGTATCACTTATTTCAATCCG
1 TCATTGATTTGGTCCACTTCTCAGTATCTCACCAGGAAGATGACCGCATCACTTATTTCAATCCA
* ** *
12655218 CTTCTCTATATCTCATCAGGAAGACGAATTTGGTCCACT-TCT-TATCTCATCAGGAAGCTAACC
66 CTTCTCTATATCTCATCAGGAAGACGAATCTAATCCACTCTCTGTATCTCATCAAGAAGCTAACC
* * *
12655281 ATTTTATTGCTTCGATCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCAC
131 ACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTCGCTCAC
* * * * *
12655346 TTTGAGCCTGGCTTCATTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGTATCAC
196 TTTAAGCCTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGAAAGATGACCGCATCAC
* * *
12655411 TTGTTTCAAT-CTGTTTCTCTATATCTCATCAGGAAGACGAATTTGGTCC
261 TTGTTTC-ATCCCGCTTCTCTATATCTCATCAAGAAGACGAATTTGGTCC
12655460 ATTTCTTAGA
Statistics
Matches: 270, Mismatches: 36, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
367 177 0.66
368 5 0.02
369 88 0.33
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (369 bp):
TCATTGATTTGGTCCACTTCTCAGTATCTCACCAGGAAGATGACCGCATCACTTATTTCAATCCA
CTTCTCTATATCTCATCAGGAAGACGAATCTAATCCACTCTCTGTATCTCATCAAGAAGCTAACC
ACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTCGCTCAC
TTTAAGCCTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGAAAGATGACCGCATCAC
TTGTTTCATCCCGCTTCTCTATATCTCATCAAGAAGACGAATTTGGTCCGCTTCTCAGTATCTCA
TCAAGAAGCTGAGGTTCGAAGATTTGCTCACTTGGAGCTTGGCT
Found at i:12656032 original size:209 final size:209
Alignment explanation
Indices: 12655093--12655977 Score: 1380
Period size: 209 Copynumber: 4.2 Consensus size: 209
12655083 AGTTTGGTCC
* * *
12655093 GCTTCTCAGTATCTCATCAAGAAGCTGAGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATT
1 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
* *
12655158 GATTTGGTCTTCTTCTCAGTATCTCACCAGGAAGATGACCGTATCACTTATTTCAATCCGCTTCT
66 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCGCTTCT
12655223 CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCT---TATCTCATCAGGAAGCTAACCATTT
131 CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
*
12655285 TATTGCTTCGATCT
196 TATTGCTTCGACCT
* *
12655299 GCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTTGAGCCTGGCTTCATT
1 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
* * * *
12655364 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGTATCACTTGTTTCAATCTGTTTCT
66 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCGCTTCT
* * * * *
12655429 CTATATCTCATCAGGAAGACGAATTTGGTCCATTTCTTAGAATATCATTAGGAAGCTAACCATTT
131 CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
12655494 TATTGCTTCGACCT
196 TATTGCTTCGACCT
** * *
12655508 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTAAAAGATTTGCCCACTTGGAGCTTGGCTTCATT
1 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
* * *
12655573 AATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCTCTTCT
66 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCGCTTCT
* * ** * *
12655638 CTGTATCTCATCAAGAAGATAAATTTGGTCTACTTCTCAGTATCTCATCAGGAGGCTAACCATTT
131 CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
**
12655703 TATTGCTTTAACCT
196 TATTGCTTCGACCT
*
12655717 GCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
1 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
* *
12655782 GATTTGGTCTTCTTCTCAGTATCTCATTAGGAAGATGACCGCATCACTTATTTCAATCCGCTTTT
66 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCGCTTCT
* *
12655847 CTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACTATTT
131 CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
*
12655912 TATTGCTTTGACCT
196 TATTGCTTCGACCT
* * *
12655926 ACTTCTCAGTATCTCATCTGGAAGCTGGGGTTCGAAGATTCGCTCACTTTGA
1 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGA
12655978 TTATGGTTTC
Statistics
Matches: 617, Mismatches: 59, Indels: 3
0.91 0.09 0.00
Matches are distributed among these distances:
206 157 0.25
209 460 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (209 bp):
GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATT
GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCGCTTCT
CTATATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
TATTGCTTCGACCT
Found at i:12660137 original size:103 final size:103
Alignment explanation
Indices: 12660004--12660212 Score: 418
Period size: 103 Copynumber: 2.0 Consensus size: 103
12659994 ATGCTTGTCT
12660004 CAATTTTCACCTCTTTCTTTTCATCTTCATTTCCCAAATTAATAACTTCCACTGGGTTTGAATGA
1 CAATTTTCACCTCTTTCTTTTCATCTTCATTTCCCAAATTAATAACTTCCACTGGGTTTGAATGA
12660069 GGTAGGATTTGCTTTTCTTCTTTTTCCATCATTCTTAA
66 GGTAGGATTTGCTTTTCTTCTTTTTCCATCATTCTTAA
12660107 CAATTTTCACCTCTTTCTTTTCATCTTCATTTCCCAAATTAATAACTTCCACTGGGTTTGAATGA
1 CAATTTTCACCTCTTTCTTTTCATCTTCATTTCCCAAATTAATAACTTCCACTGGGTTTGAATGA
12660172 GGTAGGATTTGCTTTTCTTCTTTTTCCATCATTCTTAA
66 GGTAGGATTTGCTTTTCTTCTTTTTCCATCATTCTTAA
12660210 CAA
1 CAA
12660213 ATCCGGAGGC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 106 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (103 bp):
CAATTTTCACCTCTTTCTTTTCATCTTCATTTCCCAAATTAATAACTTCCACTGGGTTTGAATGA
GGTAGGATTTGCTTTTCTTCTTTTTCCATCATTCTTAA
Found at i:12668183 original size:29 final size:29
Alignment explanation
Indices: 12668138--12668235 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
12668128 GGGCAAAATA
*
12668138 ATAA-TTTTGGACGTTCGGGGGTAAAACG
1 ATAATTTTTGGACGTTCGAGGGTAAAACG
* *
12668166 ATAATTTTTGGATGTTCGAGGGTAAAATG
1 ATAATTTTTGGACGTTCGAGGGTAAAACG
* * * * * *
12668195 GTAATTTTTGGACATTCAATGGTACAATG
1 ATAATTTTTGGACGTTCGAGGGTAAAACG
*
12668224 GTAATTTTTGGA
1 ATAATTTTTGGA
12668236 AATCTTAGGG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 4 0.07
29 56 0.93
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (29 bp):
ATAATTTTTGGACGTTCGAGGGTAAAACG
Found at i:12668261 original size:29 final size:30
Alignment explanation
Indices: 12668189--12668572 Score: 167
Period size: 29 Copynumber: 13.1 Consensus size: 30
12668179 GTTCGAGGGT
* * *
12668189 AAAATGGTAATTTTTGGACATTCAATGGT--
1 AAAATGGTAATTTTTGGAAATT-TAGGGTCA
*
12668218 ACAATGGTAATTTTTGGAAATCTTAGGGTCA
1 AAAATGGTAATTTTTGGAAAT-TTAGGGTCA
** ***
12668249 AAAATGG-AA-TTTTCAAACATCCGGGGGT--
1 AAAATGGTAATTTTTGGAA-AT-TTAGGGTCA
* * *
12668277 AAAATGGTAACTTTTGGAAAGTTCAAGGTCA
1 AAAATGGTAATTTTTGGAAA-TTTAGGGTCA
* *
12668308 AAAAT-GAAATTTTTGGACATTTGAGGGT--
1 AAAATGGTAATTTTTGGAAATTT-AGGGTCA
12668336 AAAATGGTAATTTTTGGAAAGTTT-GAGGTCA
1 AAAATGGTAATTTTTGGAAA-TTTAG-GGTCA
* * * **
12668367 AAAA-GGAAATTTCT-AAACATCCGAGGGT--
1 AAAATGGTAATTTTTGGAA-AT-TTAGGGTCA
* *
12668395 AAAATGGTAA-TTTTGGAAATTTTGGGGGC-
1 AAAATGGTAATTTTTGGAAA-TTTAGGGTCA
*
12668424 AAAATGGTAA-TTTT-G-AATGTTCGAGAGT-A
1 AAAATGGTAATTTTTGGAAAT-TT--AGGGTCA
* *
12668453 AAAAT-GTTATTTTTGGAAGTTTAAGGGT-A
1 AAAATGGTAATTTTTGGAAATTT-AGGGTCA
*
12668482 AAAAT-GTAATTTTTGGAAGTTTAAGGG-CA
1 AAAATGGTAATTTTTGGAAATTT-AGGGTCA
12668511 AAAAT-GTAATTTTTGGAAAGTTTAGGGGTC-
1 AAAATGGTAATTTTTGGAAA-TTTA-GGGTCA
*
12668541 AAAAT-GTAATTTTT-GAAAGTTTAAGGTCA
1 AAAATGGTAATTTTTGGAAA-TTTAGGGTCA
12668570 AAA
1 AAA
12668573 TATAATTTTT
Statistics
Matches: 276, Mismatches: 45, Indels: 68
0.71 0.12 0.17
Matches are distributed among these distances:
26 1 0.00
27 4 0.01
28 32 0.12
29 150 0.54
30 70 0.25
31 19 0.07
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (30 bp):
AAAATGGTAATTTTTGGAAATTTAGGGTCA
Found at i:12668292 original size:59 final size:59
Alignment explanation
Indices: 12668215--12668494 Score: 245
Period size: 59 Copynumber: 4.8 Consensus size: 59
12668205 GACATTCAAT
* *
12668215 GGTACAATGGTAATTTTTGGAAA-TCTTAGGGTCAAAAATGGAATTTTCAAACATCCGGG
1 GGTAAAATGGTAATTTTTGGAAAGT-TTAGGGTCAAAAATGGAATTTTCAAACATCCGAG
* * * * *** **
12668274 GGTAAAATGGTAACTTTTGGAAAGTTCAAGGTCAAAAATGAAATTTTTGGACATTTGAG
1 GGTAAAATGGTAATTTTTGGAAAGTTTAGGGTCAAAAATGGAATTTTCAAACATCCGAG
*
12668333 GGTAAAATGGTAATTTTTGGAAAGTTT-GAGGTCAAAAA-GGAAATTTCTAAACATCCGAG
1 GGTAAAATGGTAATTTTTGGAAAGTTTAG-GGTCAAAAATGGAATTTTC-AAACATCCGAG
* * * * ** *
12668392 GGTAAAATGGTAA-TTTTGGAAATTTTGGGGGC-AAAATGGTAATTTT-GAATGTTCGAG
1 GGTAAAATGGTAATTTTTGGAAAGTTTAGGGTCAAAAATGG-AATTTTCAAACATCCGAG
* * *
12668449 AGTAAAAAT-GTTATTTTTGG-AAGTTTAAGGGT-AAAAATGTAATTTT
1 GGT-AAAATGGTAATTTTTGGAAAGTTT-AGGGTCAAAAATGGAATTTT
12668495 TGGAAGTTTA
Statistics
Matches: 177, Mismatches: 34, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
57 27 0.15
58 43 0.24
59 106 0.60
60 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.33
Consensus pattern (59 bp):
GGTAAAATGGTAATTTTTGGAAAGTTTAGGGTCAAAAATGGAATTTTCAAACATCCGAG
Found at i:12668346 original size:118 final size:117
Alignment explanation
Indices: 12668197--12668413 Score: 323
Period size: 118 Copynumber: 1.8 Consensus size: 117
12668187 GTAAAATGGT
* * *
12668197 AATTTTTGGACATTCAATGGTACAATGGTAATTTTTGGAAA-TCTT-AGGGTCAAAAATGGAATT
1 AATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTGGAAAGT-TTGA-GGTCAAAAA-GGAAAT
*
12668260 TTC-AAACATCCGGGGGTAAAATGGTAACTTTTGGAAAGTTCAAGGTCAAAAATGA
63 TTCTAAACATCCGAGGGTAAAATGGTAA-TTTTGGAAAGTTCAAGGTCAAAAATGA
**
12668315 AATTTTTGGACATTTGAGGGTAAAATGGTAATTTTTGGAAAGTTTGAGGTCAAAAAGGAAATTTC
1 AATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTGGAAAGTTTGAGGTCAAAAAGGAAATTTC
12668380 TAAACATCCGAGGGTAAAATGGTAATTTTGGAAA
66 TAAACATCCGAGGGTAAAATGGTAATTTTGGAAA
12668414 TTTTGGGGGC
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
117 17 0.19
118 71 0.79
119 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (117 bp):
AATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTGGAAAGTTTGAGGTCAAAAAGGAAATTTC
TAAACATCCGAGGGTAAAATGGTAATTTTGGAAAGTTCAAGGTCAAAAATGA
Found at i:12668348 original size:88 final size:87
Alignment explanation
Indices: 12668185--12668349 Score: 203
Period size: 88 Copynumber: 1.9 Consensus size: 87
12668175 GGATGTTCGA
* * * *
12668185 GGGTAAAATGGTAATTTTTGGACATTCAATGGTACAATGGTAATTTTTGGAAATCTTAGGGTCAA
1 GGGTAAAATGGTAACTTTTGGAAATTCAATGGTAAAATGGAAATTTTTGGAAATCTTAGGGT-AA
12668250 AAATGGAATTTTCAAACATCCGG
65 AAATGGAATTTTCAAACATCCGG
*
12668273 GGGTAAAATGGTAACTTTTGGAAAGTTCAA-GGTCAAAAAT-GAAATTTTTGGACAT-TTGAGGG
1 GGGTAAAATGGTAACTTTTGGAAA-TTCAATGGT--AAAATGGAAATTTTTGGAAATCTT-AGGG
12668335 T-AAAATGGTAATTTT
62 TAAAAATGG-AATTTT
12668350 TGGAAAGTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
87 7 0.10
88 33 0.49
89 23 0.34
90 4 0.06
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (87 bp):
GGGTAAAATGGTAACTTTTGGAAATTCAATGGTAAAATGGAAATTTTTGGAAATCTTAGGGTAAA
AATGGAATTTTCAAACATCCGG
Found at i:12668457 original size:58 final size:57
Alignment explanation
Indices: 12668220--12668553 Score: 202
Period size: 59 Copynumber: 5.7 Consensus size: 57
12668210 TCAATGGTAC
* * * * *
12668220 AATGGTAATTTTTGGAAATCTTA-GGGTCAAAAATGGAATTTTCAAACATCCGGGGGT-AA
1 AATGGTAATTTTTGGAAAT-TTAGGGGTC-AAAATGTAATTTT-GAA-GTTCGAGGGTAAA
* * * * *
12668279 AATGGTAACTTTTGGAAAGTTCA-AGGTCAAAAATGAAATTTTTGGACA-TTTGAGGGT-AA
1 AATGGTAATTTTTGGAAA-TTTAGGGGTC-AAAATGTAA-TTTT-GA-AGTTCGAGGGTAAA
* * * * * *
12668338 AATGGTAATTTTTGGAAAGTTT-GAGGTCAAAAAGGAAATTTCTAAACATCCGAGGGT-AA
1 AATGGTAATTTTTGGAAA-TTTAGGGGTC-AAAATGTAATTT-TGAA-GTTCGAGGGTAAA
* * *
12668397 AATGGTAA-TTTTGGAAATTTTGGGGGCAAAATGGTAATTTTGAATGTTCGAGAGTAAA
1 AATGGTAATTTTTGGAAATTTAGGGGTCAAAAT-GTAATTTTGAA-GTTCGAGGGTAAA
* * * * ** *
12668455 AAT-GTTATTTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGGAAGTTTAAGGGCAAA
1 AATGGTAATTTTTGGAAATTTAGGGGTCAAAATGTAA-TTTT-GAAGTTCGAGGGTAAA
12668513 AAT-GTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTT
1 AATGGTAATTTTTGGAAA-TTTAGGGGTCAAAATGTAATTTT
12668554 TGAAAGTTTA
Statistics
Matches: 223, Mismatches: 38, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
57 25 0.11
58 79 0.35
59 112 0.50
60 6 0.03
61 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.34
Consensus pattern (57 bp):
AATGGTAATTTTTGGAAATTTAGGGGTCAAAATGTAATTTTGAAGTTCGAGGGTAAA
Found at i:12668573 original size:58 final size:58
Alignment explanation
Indices: 12668395--12668587 Score: 207
Period size: 58 Copynumber: 3.3 Consensus size: 58
12668385 ATCCGAGGGT
* * * ** *
12668395 AAAATGGTAA-TTTTGGAAA-TTTTGGGGGCAAAATGGTAA-TTTTGAATGTTCGAGAGTA
1 AAAAT-GTAATTTTTGGAAAGTTTAGGGGTCAAAAT-GTAATTTTTGAAAGTTTAAG-GTC
* * * * *
12668453 AAAATGTTATTTTTGG-AAGTTTAAGGGTAAAAATGTAATTTTTGGAAGTTTAAGGGC
1 AAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAGTTTAAGGTC
12668510 AAAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAGTTTAAGGTC
1 -AAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAGTTTAAGGTC
*
12668569 AAAATATAATTTTT-GAAAG
1 AAAATGTAATTTTTGGAAAG
12668588 GTTCGAGGGC
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
57 15 0.13
58 61 0.54
59 37 0.33
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.37
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGAAAGTTTAAGGTC
Found at i:12668582 original size:29 final size:28
Alignment explanation
Indices: 12668277--12668587 Score: 173
Period size: 29 Copynumber: 10.7 Consensus size: 28
12668267 ATCCGGGGGT
* *
12668277 AAAATGGTAACTTTTGGAAAGTTCAAGGTC
1 AAAAT-GTAA-TTTTTGAAAGTTTAAGGTC
* * *
12668307 AAAAATGAAATTTTTGGACA-TTTGAGGGT-
1 -AAAATGTAATTTTT-GAAAGTTT-AAGGTC
*
12668336 AAAATGGTAATTTTTGGAAAGTTTGAGGTC
1 AAAAT-GTAATTTTT-GAAAGTTTAAGGTC
* * * * ** *
12668366 AAAAAGGAAATTTCT-AAACATCCGAGGGT-
1 -AAAATGTAATTTTTGAAA-GT-TTAAGGTC
* * ** *
12668395 AAAATGGTAATTTTGGAAATTTTGGGGGC
1 AAAAT-GTAATTTTTGAAAGTTTAAGGTC
* ** *
12668424 AAAATGGTAA-TTTTGAATGTTCGAGAGTA
1 AAAAT-GTAATTTTTGAAAGTTTAAG-GTC
* * *
12668453 AAAATGTTATTTTTGGAAGTTTAAGGGTA
1 AAAATGTAATTTTTGAAAGTTTAA-GGTC
* *
12668482 AAAATGTAATTTTTGGAAGTTTAAGGGC
1 AAAATGTAATTTTTGAAAGTTTAAGGTC
*
12668510 AAAAATGTAATTTTTGGAAAGTTTAGGGGTC
1 -AAAATGTAATTTTT-GAAAGTTTA-AGGTC
12668541 AAAATGTAATTTTTGAAAGTTTAAGGTC
1 AAAATGTAATTTTTGAAAGTTTAAGGTC
*
12668569 AAAATATAATTTTTGAAAG
1 AAAATGTAATTTTTGAAAG
12668588 GTTCGAGGGC
Statistics
Matches: 217, Mismatches: 46, Indels: 37
0.72 0.15 0.12
Matches are distributed among these distances:
28 52 0.24
29 104 0.48
30 49 0.23
31 12 0.06
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (28 bp):
AAAATGTAATTTTTGAAAGTTTAAGGTC
Found at i:12669695 original size:3 final size:3
Alignment explanation
Indices: 12669682--12669751 Score: 63
Period size: 3 Copynumber: 23.0 Consensus size: 3
12669672 CTTTCCTTTT
* * *
12669682 TTA TT- TTA TTA TTA ATA TTA TTA ATG TTA -TA TTAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
12669726 TTAA TTA TTA TTA TTA CTA TTTA TTA
1 TT-A TTA TTA TTA TTA TTA -TTA TTA
12669752 AATACGTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 4 0.07
3 42 0.78
4 8 0.15
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:12669751 original size:13 final size:13
Alignment explanation
Indices: 12669682--12669741 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
12669672 CTTTCCTTTT
12669682 TTATT-TTATT-A
1 TTATTATTATTAA
*
12669693 TTAATATTATTAA
1 TTATTATTATTAA
*
12669706 -TGTTA-TATTAA
1 TTATTATTATTAA
12669717 TTATTATTATTAA
1 TTATTATTATTAA
12669730 TTATTATTATTA
1 TTATTATTATTA
12669742 CTATTTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
11 10 0.24
12 12 0.29
13 19 0.46
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATTATTATTAA
Found at i:12670409 original size:12 final size:10
Alignment explanation
Indices: 12670384--12670434 Score: 59
Period size: 10 Copynumber: 4.9 Consensus size: 10
12670374 TGGACTTTTT
12670384 AATTTAAATA
1 AATTTAAATA
12670394 AATTTAAACTTA
1 AATTTAAA--TA
12670406 AATTTATAATA
1 AATTTA-AATA
*
12670417 AA-TAAAATA
1 AATTTAAATA
12670426 AATTTAAAT
1 AATTTAAAT
12670435 TTTGTTGGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 6 0.17
10 15 0.43
11 4 0.11
12 8 0.23
13 2 0.06
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
AATTTAAATA
Found at i:12680062 original size:17 final size:18
Alignment explanation
Indices: 12680033--12680071 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
12680023 ATCTCTAACA
12680033 AATATAGTATATAGTA-TG
1 AATATAGTATATA-TATTG
12680051 AATATA-TATATATATTG
1 AATATAGTATATATATTG
12680068 AATA
1 AATA
12680072 AATGATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.10
17 12 0.60
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (18 bp):
AATATAGTATATATATTG
Found at i:12680531 original size:2 final size:2
Alignment explanation
Indices: 12680524--12680549 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12680514 GAAAGTATGA
12680524 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12680550 TTCTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12682171 original size:21 final size:22
Alignment explanation
Indices: 12682147--12682188 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
12682137 ATCAAAAAGA
12682147 AAAAGAGAA-ATGAGT-AGAAAC
1 AAAAGA-AACATGAGTAAGAAAC
12682168 AAAAGAAACATGAGTAAGAAA
1 AAAAGAAACATGAGTAAGAAA
12682189 GCACGTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 12 0.63
22 5 0.26
ACGTcount: A:0.64, C:0.05, G:0.21, T:0.10
Consensus pattern (22 bp):
AAAAGAAACATGAGTAAGAAAC
Found at i:12682359 original size:23 final size:25
Alignment explanation
Indices: 12682332--12682381 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
12682322 AGAAAATGAT
12682332 GGTGAGA-GAAGGA-GACATAAAGG
1 GGTGAGATGAAGGAGGACATAAAGG
* *
12682355 GGTGAGATGGAGTAGGACATAAAGG
1 GGTGAGATGAAGGAGGACATAAAGG
12682380 GG
1 GG
12682382 AAGGATAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 7 0.30
24 4 0.17
25 12 0.52
ACGTcount: A:0.38, C:0.04, G:0.46, T:0.12
Consensus pattern (25 bp):
GGTGAGATGAAGGAGGACATAAAGG
Found at i:12687474 original size:17 final size:17
Alignment explanation
Indices: 12687433--12687482 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
12687423 CATGTCTTCA
* *
12687433 TATTCTTATTATTAATGG
1 TATT-TTATTAATAATAG
12687451 T-TTTTATTAATAATAG
1 TATTTTATTAATAATAG
*
12687467 TATTTTATTAAAAATA
1 TATTTTATTAATAATA
12687483 ATAATATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 12 0.43
17 15 0.54
18 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (17 bp):
TATTTTATTAATAATAG
Found at i:12692372 original size:59 final size:57
Alignment explanation
Indices: 12692255--12692373 Score: 141
Period size: 59 Copynumber: 2.1 Consensus size: 57
12692245 AATTAATACA
* * * * *
12692255 TTTTTTAATTTAGTACTTAAATTTTTTTGACGCAATTTGGTATCTAAATTTGATATT
1 TTTTTTAATTTAGTACCTAAATTTTTTTGACGCAATTTGATACCTAAATTAGACATT
* *
12692312 TTTTTTAATTTGGTACCTAAACTTTTTTTAGACTCAATTTGATACCTAAACTTAG-CATT
1 TTTTTTAATTTAGTACCTAAA-TTTTTTT-GACGCAATTTGATACCTAAA-TTAGACATT
12692371 TTT
1 TTT
12692374 GCCTAAGCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 19 0.37
58 7 0.13
59 23 0.44
60 3 0.06
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (57 bp):
TTTTTTAATTTAGTACCTAAATTTTTTTGACGCAATTTGATACCTAAATTAGACATT
Found at i:12692373 original size:57 final size:55
Alignment explanation
Indices: 12692252--12692373 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 55
12692242 TGAAATTAAT
* * * *
12692252 ACATTTTTTAATTTAGTACTTAAATTTTTTTGACGCAATTTGGTATCTAAATTTG
1 ACATTTTTTAATTTAGTACCTAAATTTTTTTGACGCAATTTGATACCTAAATTAG
* * *
12692307 ATATTTTTTTTAATTTGGTACCTAAACTTTTTTTAGACTCAATTTGATACCTAAACTTAG
1 ACA--TTTTTTAATTTAGTACCTAAA-TTTTTTT-GACGCAATTTGATACCTAAA-TTAG
12692367 -CATTTTT
1 ACATTTTT
12692374 GCCTAAGCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
55 2 0.04
57 24 0.44
58 7 0.13
59 18 0.33
60 3 0.06
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (55 bp):
ACATTTTTTAATTTAGTACCTAAATTTTTTTGACGCAATTTGATACCTAAATTAG
Found at i:12693264 original size:21 final size:21
Alignment explanation
Indices: 12693221--12693264 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
12693211 AATTTTTTTT
*
12693221 ACTTTAAACCATAAACCTTAA
1 ACTTTAAACCATAAACCTCAA
** *
12693242 ACTTTAAACTTTAAATCTCAA
1 ACTTTAAACCATAAACCTCAA
12693263 AC
1 AC
12693265 CTTGAATCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (21 bp):
ACTTTAAACCATAAACCTCAA
Found at i:12693396 original size:20 final size:20
Alignment explanation
Indices: 12693373--12693414 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
12693363 TCAAAACCTG
12693373 AACCATGAA-CCTCGAACCCA
1 AACCATGAATCCTC-AACCCA
*
12693393 AACCTTGAATCCTCAACCCA
1 AACCATGAATCCTCAACCCA
12693413 AA
1 AA
12693415 ATCCCAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.40, C:0.38, G:0.07, T:0.14
Consensus pattern (20 bp):
AACCATGAATCCTCAACCCA
Found at i:12693401 original size:27 final size:29
Alignment explanation
Indices: 12693339--12693401 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
12693329 TCAAAACATG
*
12693339 AACCTT-AAACATCGAACCTTGAACTCAA
1 AACCTTGAAACATCGAACCTCGAACTCAA
* *
12693367 AACC-TGAACCAT-GAACCTCGAAC-CCA
1 AACCTTGAAACATCGAACCTCGAACTCAA
12693393 AACCTTGAA
1 AACCTTGAA
12693402 TCCTCAACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 6 0.20
27 15 0.50
28 9 0.30
ACGTcount: A:0.41, C:0.32, G:0.10, T:0.17
Consensus pattern (29 bp):
AACCTTGAAACATCGAACCTCGAACTCAA
Found at i:12693469 original size:20 final size:20
Alignment explanation
Indices: 12693440--12693493 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
12693430 CTAGAACCTC
12693440 AAGTTCAAAGTTTAGGGTTT-
1 AAGTTCAAAGTTTA-GGTTTG
*
12693460 AAGTTTAAAGTTTAGGTTTG
1 AAGTTCAAAGTTTAGGTTTG
*
12693480 AGGTTCAAAGTTTA
1 AAGTTCAAAGTTTA
12693494 AAGTTTAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 5 0.17
20 25 0.83
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.41
Consensus pattern (20 bp):
AAGTTCAAAGTTTAGGTTTG
Found at i:12693490 original size:27 final size:28
Alignment explanation
Indices: 12693460--12693512 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
12693450 TTTAGGGTTT
12693460 AAGTTTAAAGTTTAG-GTTTGAGGTTCA
1 AAGTTTAAAGTTTAGTGTTTGAGGTTCA
*
12693487 AAGTTTAAAGTTTAGTGTTTGGGGTT
1 AAGTTTAAAGTTTAGTGTTTGAGGTT
12693513 TAAGGTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.43
Consensus pattern (28 bp):
AAGTTTAAAGTTTAGTGTTTGAGGTTCA
Found at i:12693554 original size:27 final size:27
Alignment explanation
Indices: 12693503--12693554 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
12693493 AAAGTTTAGT
* *
12693503 GTTTGGGGTTTAAGGTTGAGGTTTTGA
1 GTTTGGGATTTAAGGTTGAGATTTTGA
* *
12693530 GTTTGGGATTTATGGTTTAGATTTT
1 GTTTGGGATTTAAGGTTGAGATTTT
12693555 AGGATTCAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (27 bp):
GTTTGGGATTTAAGGTTGAGATTTTGA
Found at i:12694241 original size:13 final size:13
Alignment explanation
Indices: 12694221--12694269 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
12694211 ATAATAAAAA
12694221 ATTT-TGATTTAT
1 ATTTATGATTTAT
12694233 ATTTATGATTTAT
1 ATTTATGATTTAT
12694246 ATTTATGATTTAT
1 ATTTATGATTTAT
*
12694259 AATTAT-ATTTA
1 ATTTATGATTTA
12694270 GTGATGTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
12 9 0.26
13 26 0.74
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (13 bp):
ATTTATGATTTAT
Found at i:12694245 original size:7 final size:7
Alignment explanation
Indices: 12694221--12694258 Score: 55
Period size: 6 Copynumber: 5.9 Consensus size: 7
12694211 ATAATAAAAA
12694221 ATTT-TG
1 ATTTATG
12694227 ATTTAT-
1 ATTTATG
12694233 ATTTATG
1 ATTTATG
12694240 ATTTAT-
1 ATTTATG
12694246 ATTTATG
1 ATTTATG
12694253 ATTTAT
1 ATTTAT
12694259 AATTATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 16 0.55
7 13 0.45
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (7 bp):
ATTTATG
Found at i:12694249 original size:19 final size:20
Alignment explanation
Indices: 12694227--12694274 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
12694217 AAAAATTTTG
*
12694227 ATTTAT-ATTTATGATTTAT
1 ATTTATGATTTATGAATTAT
12694246 ATTTATGATTTAT-AATTAT
1 ATTTATGATTTATGAATTAT
12694265 ATTTAGTGAT
1 ATTTA-TGAT
12694275 GTAATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTATGATTTATGAATTAT
Found at i:12695037 original size:18 final size:18
Alignment explanation
Indices: 12695016--12695052 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
12695006 AGATAGACGA
*
12695016 AAACGTGCCATAAGACAG
1 AAACGTGCCACAAGACAG
*
12695034 AAACGTTCCACAAGACAG
1 AAACGTGCCACAAGACAG
12695052 A
1 A
12695053 GGAAAAACGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (18 bp):
AAACGTGCCACAAGACAG
Found at i:12695810 original size:21 final size:20
Alignment explanation
Indices: 12695775--12695825 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
12695765 CTTTATCATG
*
12695775 TATATTGTTTTATTATTTAT
1 TATATTGTATTATTATTTAT
12695795 TATATTGTAATTATTATTTAT
1 TATATTGT-ATTATTATTTAT
*
12695816 T-TATTATATT
1 TATATTGTATT
12695826 CAAATTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 13 0.46
21 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TATATTGTATTATTATTTAT
Found at i:12707856 original size:27 final size:27
Alignment explanation
Indices: 12707826--12707879 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
12707816 ATTAAAAGTC
12707826 TAATTTTTTTCCTCTTTTGAAAAGAAT
1 TAATTTTTTTCCTCTTTTGAAAAGAAT
12707853 TAATTTTTTTCCTCTTTTGAAAAGAAT
1 TAATTTTTTTCCTCTTTTGAAAAGAAT
12707880 GACTGTCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (27 bp):
TAATTTTTTTCCTCTTTTGAAAAGAAT
Found at i:12707934 original size:17 final size:19
Alignment explanation
Indices: 12707912--12707948 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
12707902 TCTTTTGCAA
12707912 TTATTT-TCTTTTG-TTCC
1 TTATTTATCTTTTGCTTCC
*
12707929 TTATTTATTTTTTGCTTCC
1 TTATTTATCTTTTGCTTCC
12707948 T
1 T
12707949 GCTATACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.08, C:0.16, G:0.05, T:0.70
Consensus pattern (19 bp):
TTATTTATCTTTTGCTTCC
Found at i:12715841 original size:41 final size:41
Alignment explanation
Indices: 12715753--12715845 Score: 105
Period size: 41 Copynumber: 2.3 Consensus size: 41
12715743 CAATTCAACG
* * *
12715753 GCATAAAGCCTACTGAGCTCGAGGCCCGATACGGTAAACCA
1 GCATAAAGCCTACTAAGCTCGAGACCCGATACAGTAAACCA
** * * * *
12715794 AAATAAAGCCTACTAAGCTTGAGACCTGATACAGTACACTA
1 GCATAAAGCCTACTAAGCTCGAGACCCGATACAGTAAACCA
12715835 GCATAAAGCCT
1 GCATAAAGCCT
12715846 GTTAGGCTCG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (41 bp):
GCATAAAGCCTACTAAGCTCGAGACCCGATACAGTAAACCA
Found at i:12723503 original size:13 final size:13
Alignment explanation
Indices: 12723487--12723534 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
12723477 GACCAAACAT
12723487 GTTGACTTTGACC
1 GTTGACTTTGACC
*
12723500 GTTGATCGTTGA-C
1 GTTGA-CTTTGACC
* *
12723513 TTTGACTTTAACC
1 GTTGACTTTGACC
12723526 GTTGACTTT
1 GTTGACTTT
12723535 TTTTGCCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
12 4 0.14
13 19 0.68
14 5 0.18
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.44
Consensus pattern (13 bp):
GTTGACTTTGACC
Found at i:12729391 original size:11 final size:11
Alignment explanation
Indices: 12729318--12729393 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
12729308 ATTCCACAAA
*
12729318 TAATATTATTT
1 TAATATTAATT
12729329 TAATAGTTTAATGT
1 TAATA--TTAAT-T
12729343 TAA-ATTTAATT
1 TAATA-TTAATT
*
12729354 TAATACTTATTT
1 TAATA-TTAATT
*
12729366 TAATAGT-ATT
1 TAATATTAATT
12729376 T--TATTAATT
1 TAATATTAATT
12729385 TAATATTAA
1 TAATATTAA
12729394 AGTGATTATC
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 16 0.31
12 17 0.33
13 5 0.10
14 4 0.08
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:12732086 original size:5 final size:5
Alignment explanation
Indices: 12732078--12732105 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
12732068 ATATATAATA
12732078 TAAAT TAAAT TAAAT TAAAT TAAAT TAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAA
12732106 TATTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TAAAT
Found at i:12733979 original size:30 final size:30
Alignment explanation
Indices: 12733918--12733998 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
12733908 CTTTGTGGTT
*
12733918 TTTAAGGACTAAATTGGAATTTCAATGAAA
1 TTTAAGGACTAAATTGGAATTTCAATAAAA
* *
12733948 TTTAAGGACTAAATT-GAACTTTGATTAAAA
1 TTTAAGGACTAAATTGGAA-TTTCAATAAAA
*
12733978 TTTACA-G-CTAAATTGGGATTT
1 TTTA-AGGACTAAATTGGAATTT
12733999 TAGGACTAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 13 0.30
30 30 0.68
31 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTAAGGACTAAATTGGAATTTCAATAAAA
Found at i:12734675 original size:18 final size:17
Alignment explanation
Indices: 12734652--12734685 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
12734642 CAAAAGCGTA
12734652 AGCCCAATACCATAAACT
1 AGCCCAA-ACCATAAACT
*
12734670 AGCCCAAACCTTAAAC
1 AGCCCAAACCATAAAC
12734686 CATTTTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.35, G:0.06, T:0.15
Consensus pattern (17 bp):
AGCCCAAACCATAAACT
Found at i:12738655 original size:554 final size:555
Alignment explanation
Indices: 12736807--12742356 Score: 10811
Period size: 555 Copynumber: 10.0 Consensus size: 555
12736797 GTGGGACTGT
*
12736807 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTAAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12736872 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12736937 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12737002 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12737067 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12737132 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTG-TTT
12737197 TTTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
390 TTTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
*
12737262 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTTATTGGTTGTCCAATATTTAA
455 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAA
12737327 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
520 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
*
12737363 CTAGAGCAATCTAAGTTATCTATGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12737428 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
*
12737493 TTGTTTATGGACATCAACATCACAGGGCGAAAAGGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12737558 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12737623 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
*
12737688 AATCAATGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
*
12737753 TTCAAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
12737818 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
*
12737883 TAGTACAAAGTGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12737918 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12737983 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12738048 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
*
12738113 CTTGTTCATATCGAAGAAAGTCATGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12738178 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12738243 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
12738308 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGT-CTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
*
12738372 AACTATTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
12738437 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12738472 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12738537 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12738602 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12738667 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12738732 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12738797 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
12738862 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
*
12738927 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTTATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
12738992 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
*
12739027 CTAGAGCAATCTAAGTTATCTATGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12739092 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
*
12739157 TTGTTTATGGACATCAACATCACAGGGCGAAAAGGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12739222 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12739287 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
*
12739352 AATCAATGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
*
12739417 TTCAAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
12739482 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
*
12739547 TAGTACAAAGTGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12739582 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12739647 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12739712 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
*
12739777 CTTGTTCATATCGAAGAAAGTCATGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12739842 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12739907 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
12739972 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGT-CTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
*
12740036 AACTATTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
12740101 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12740136 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12740201 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12740266 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12740331 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12740396 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12740461 AATCAGTGGA-GGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTG-TTT
12740525 TTTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
390 TTTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
*
12740590 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTTATTGGTTGTCCAATATTTAA
455 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAA
12740655 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
520 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
*
12740691 CTAGAGCAATCTAAGTTATCTATGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12740756 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
*
12740821 TTGTTTATGGACATCAACATCACAGGGCGAAAAGGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12740886 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12740951 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
*
12741016 AATCAATGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
*
12741081 TTCAAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
12741146 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
*
12741211 TAGTACAAAGTGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12741246 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12741311 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12741376 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
*
12741441 CTTGTTCATATCGAAGAAAGTCATGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12741506 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12741571 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
12741636 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGT-CTC
391 TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
*
12741700 AACTATTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
456 AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
12741765 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
521 TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12741800 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
1 CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
12741865 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
66 AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
12741930 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
131 TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
12741995 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
196 CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
12742060 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
261 TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
12742125 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
326 AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTG-TTT
*
12742190 TTTCGAATAGATTAGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
390 TTTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCT
12742255 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAA
455 CAACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAA
12742320 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
520 CTAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
12742356 C
1 C
12742357 AAAAGATAGT
Statistics
Matches: 4939, Mismatches: 49, Indels: 12
0.99 0.01 0.00
Matches are distributed among these distances:
553 50 0.01
554 1537 0.31
555 2817 0.57
556 535 0.11
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (555 bp):
CTAGAGCAATCTAAGTTATCTGTGATCAGTAAAGAAGATGAAGTAGAGCTAGAGAGTGAGGAATT
AAAGCATGGGTTAATGATACTTACTTCTACAAAATTGAAGAGGGTTCGCAAGTAGAAAGGGTTAA
TTGTTTATGGACATCAACATCACAGGGCGAAAAAGGAATGCTCTTGTTTATACGAAGGCATCACA
CTTGTTCATATCGAAGAAAGTCGTGGGTAATCTTGGTCTTGCAGTTAGCAGATCGACTAAGAAGA
TTAAGATTATTAATTTTAATAAGGTCTCAACTGTGGGAGTAGCACAAGGAGTTGAGCTACAGATC
AATCAGTGGAGGGGTTGTCGGATCTGGTGCCCTAAGTGTAGTATATTTGTTTGTAAACTTGTTTT
TTCGAATAGATTGGTTTAATAAAATTATTTACGAATTACATTAATACCATTTATATATTGTCCTC
AACTGTTTTTACATGTAAAGCAAAATGGAAGCAAATATTAGTTCATTGGTTGTCCAATATTTAAC
TAGTACAAAGCGGTATAACGAGGTCGATCGTAATA
Found at i:12743456 original size:7 final size:7
Alignment explanation
Indices: 12743440--12743468 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
12743430 TGAATAAATG
12743440 TATT-TT
1 TATTATT
12743446 TATTATT
1 TATTATT
12743453 TATTATT
1 TATTATT
12743460 TATTATT
1 TATTATT
12743467 TA
1 TA
12743469 CATGATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:12743690 original size:20 final size:21
Alignment explanation
Indices: 12743655--12743694 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
12743645 ATCTCGAAAA
12743655 ATCAAGATGCATCCAAAATTG
1 ATCAAGATGCATCCAAAATTG
12743676 ATCAAGATG-ATCCAAAATT
1 ATCAAGATGCATCCAAAATT
12743695 AATTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.25
Consensus pattern (21 bp):
ATCAAGATGCATCCAAAATTG
Found at i:12745032 original size:13 final size:13
Alignment explanation
Indices: 12745014--12745038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12745004 TTATTTCAAA
12745014 ATTATTGGCATTG
1 ATTATTGGCATTG
12745027 ATTATTGGCATT
1 ATTATTGGCATT
12745039 AAGACTTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
ATTATTGGCATTG
Found at i:12752739 original size:58 final size:57
Alignment explanation
Indices: 12752576--12752744 Score: 191
Period size: 58 Copynumber: 2.9 Consensus size: 57
12752566 TAATATTATA
* * * *
12752576 TATTATAATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAAATGTTATTAAAT
1 TATTATTATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAAT
* * *
12752635 TATATATTA-TTTTATTATATTGTATTTAATAATAATTATGTTAAAATATAATTAAAT
1 TAT-TATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
*
12752692 TAATTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAATTTAAT
1 T-ATTATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATATAAT
12752745 AACAATAATC
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
57 19 0.20
58 56 0.60
59 12 0.13
60 7 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (57 bp):
TATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
Found at i:12752921 original size:16 final size:16
Alignment explanation
Indices: 12752900--12752955 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
12752890 TGAAATACTG
*
12752900 ATTACAGCCCTATTCT
1 ATTACAGCTCTATTCT
12752916 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCT
* * *
12752932 ATTATAACTCTATTCC
1 ATTACAGCTCTATTCT
12752948 ATTACAGC
1 ATTACAGC
12752956 GAACCAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.05, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCT
Found at i:12761321 original size:21 final size:20
Alignment explanation
Indices: 12761301--12761355 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
12761291 ATAAATTTAT
12761301 TAAAAATATAAAAAATATTA
1 TAAAAATATAAAAAATATTA
* *
12761321 TAAAAATTGTAAAAAAAATTA
1 TAAAAA-TATAAAAAATATTA
12761342 TAAAAATATTAAAA
1 TAAAAATA-TAAAA
12761356 TTTATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (20 bp):
TAAAAATATAAAAAATATTA
Found at i:12761324 original size:12 final size:11
Alignment explanation
Indices: 12761301--12761352 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
12761291 ATAAATTTAT
12761301 TAAAAATA-TA
1 TAAAAATATTA
12761311 -AAAAATATTA
1 TAAAAATATTA
12761321 TAAAAAT-TGTA
1 TAAAAATAT-TA
*
12761332 -AAAAAAATTA
1 TAAAAATATTA
12761342 TAAAAATATTA
1 TAAAAATATTA
12761353 AAATTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 7 0.20
10 10 0.29
11 18 0.51
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (11 bp):
TAAAAATATTA
Found at i:12761395 original size:70 final size:68
Alignment explanation
Indices: 12761264--12761395 Score: 160
Period size: 70 Copynumber: 1.9 Consensus size: 68
12761254 ATATAAAAAC
* * *
12761264 AAAAAAATATTAAAAATTAAAATTGATATAAATTTATTAAAAATATAAAAAATATTATAAAAATT
1 AAAAAAATATAAAAAATTAAAATTGATATAAACTTATTAAAAATATAAAAAATATCATAAAAATT
12761329 GTA
66 GTA
* * * *
12761332 AAAAAAATTATAAAAATATTAAAATTTATATATACTTA-TAAAAGTTATAAAAAA-ATCATTAAA
1 AAAAAAA-TATAAAAA-ATTAAAATTGATATAAACTTATTAAAA-ATATAAAAAATATCATAAAA
12761395 A
63 A
12761396 CTTGAAATGG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
68 7 0.13
69 20 0.37
70 27 0.50
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (68 bp):
AAAAAAATATAAAAAATTAAAATTGATATAAACTTATTAAAAATATAAAAAATATCATAAAAATT
GTA
Found at i:12762547 original size:30 final size:30
Alignment explanation
Indices: 12762482--12762548 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
12762472 TGTTAATCAA
* *
12762482 TGACTGTTTTGTCACTTTTCGATAAAGTTAG
1 TGACTGTTTTGTCACATTTC-ACAAAGTTAG
12762513 TGACTGTTTTGTCACATTTC-CAAAGTTAAG
1 TGACTGTTTTGTCACATTTCACAAAGTT-AG
12762543 TGACTG
1 TGACTG
12762549 AAATGTAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 6 0.18
30 8 0.24
31 19 0.58
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (30 bp):
TGACTGTTTTGTCACATTTCACAAAGTTAG
Found at i:12762957 original size:17 final size:16
Alignment explanation
Indices: 12762935--12763041 Score: 54
Period size: 17 Copynumber: 6.2 Consensus size: 16
12762925 TTTATTAGAA
12762935 TTTTTATGTTTTTATAT
1 TTTTTAT-TTTTTATAT
* * *
12762952 TTTTTAAGTTTATATCAA
1 TTTTT-ATTTTTTAT-AT
*
12762970 TTTTCATTTTTTTAATAT
1 TTTTTA-TTTTTT-ATAT
* * *
12762988 TTTATACTTTATATAT
1 TTTTTATTTTTTATAT
*
12763004 ATTTTA-TTTTTATAAT
1 TTTTTATTTTTTAT-AT
12763020 TTTTGTGATTTTTTAATAT
1 TTTT-T-ATTTTTT-ATAT
12763039 TTT
1 TTT
12763042 ATGAAAAATA
Statistics
Matches: 66, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
15 6 0.09
16 13 0.20
17 17 0.26
18 16 0.24
19 12 0.18
20 2 0.03
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.68
Consensus pattern (16 bp):
TTTTTATTTTTTATAT
Found at i:12762999 original size:35 final size:34
Alignment explanation
Indices: 12762919--12763023 Score: 92
Period size: 35 Copynumber: 3.1 Consensus size: 34
12762909 TATAAAAAAA
* *
12762919 TTATAA-TTTATTAGAATTTTTATGTTTTT-ATATT
1 TTATAACTTTA-TATAA-TTTTATTTTTTTAATATT
* *
12762953 TTTTAAGTTTATATCAATTTTCATTTTTTTAATATT
1 TTATAACTTTATAT-AATTTT-ATTTTTTTAATATT
*
12762989 TTAT-ACTTTATATATATTTTATTTTTATAAT-TT
1 TTATAACTTTATATA-ATTTTATTTTTTTAATATT
12763022 TT
1 TT
12763024 GTGATTTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
33 4 0.07
34 22 0.37
35 26 0.43
36 8 0.13
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (34 bp):
TTATAACTTTATATAATTTTATTTTTTTAATATT
Found at i:12763846 original size:57 final size:60
Alignment explanation
Indices: 12763712--12763877 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 60
12763702 GACACCCAAA
* * * * * * *
12763712 AATAAAAATAA-AATTATATTTTGGTGTTTGTCATCTAATGGTCAACACCCACAAATAATATG
1 AATAAAAA-AATAATT-T-TTTTCGTGTTTGACAACCAATGGCCGACACCCACAAATAATACG
*
12763774 AATAAAAAAATAA-TTTTTTCGTGTTTGACAACCAATGG-CGACACCCATAAA-AATACG
1 AATAAAAAAATAATTTTTTTCGTGTTTGACAACCAATGGCCGACACCCACAAATAATACG
* *
12763831 AATTAAAAAATAATTTTTTTGGTGTTTGACAACCAATGGCCGACACC
1 AATAAAAAAATAATTTTTTTCGTGTTTGACAACCAATGGCCGACACC
12763878 AACTTTCCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
57 17 0.18
58 35 0.38
59 26 0.28
60 1 0.01
61 3 0.03
62 10 0.11
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.31
Consensus pattern (60 bp):
AATAAAAAAATAATTTTTTTCGTGTTTGACAACCAATGGCCGACACCCACAAATAATACG
Found at i:12767422 original size:15 final size:15
Alignment explanation
Indices: 12767402--12767446 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
12767392 ATACGCTGCA
12767402 ACGCACATTGTGTAT
1 ACGCACATTGTGTAT
12767417 ACGCACATTGTGTAT
1 ACGCACATTGTGTAT
*
12767432 ACACACATTGTGTAT
1 ACGCACATTGTGTAT
12767447 CTAGGAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (15 bp):
ACGCACATTGTGTAT
Found at i:12767877 original size:22 final size:21
Alignment explanation
Indices: 12767851--12767903 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
12767841 GTTTAAATTC
12767851 GAAATTGAAATTAATAGAGTTT
1 GAAATT-AAATTAATAGAGTTT
*
12767873 GAAATTAAAGTTAATGGAGTTT
1 GAAATTAAA-TTAATAGAGTTT
*
12767895 AAAATTAAA
1 GAAATTAAA
12767904 ATGGAATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (21 bp):
GAAATTAAATTAATAGAGTTT
Found at i:12767926 original size:85 final size:85
Alignment explanation
Indices: 12767808--12767969 Score: 270
Period size: 85 Copynumber: 1.9 Consensus size: 85
12767798 AGAAATGAAA
* * * *
12767808 TTAAAGTTGAAATGAAATTTAAATTAATATATAGTTTAAATTCGAAATTGAAATTAATAGAGTTT
1 TTAAAATTAAAATGAAATTCAAATTAATATATAGTTTAAATTCGAAATTAAAATTAATAGAGTTT
12767873 GAAATTAAAGTTAATGGAGT
66 GAAATTAAAGTTAATGGAGT
* *
12767893 TTAAAATTAAAATGGAATTCAAATTAATTTATAGTTTAAATTCGAAATTAAAATTAATAGAGTTT
1 TTAAAATTAAAATGAAATTCAAATTAATATATAGTTTAAATTCGAAATTAAAATTAATAGAGTTT
12767958 GAAATTAAAGTT
66 GAAATTAAAGTT
12767970 GAAATGAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.47, C:0.02, G:0.13, T:0.38
Consensus pattern (85 bp):
TTAAAATTAAAATGAAATTCAAATTAATATATAGTTTAAATTCGAAATTAAAATTAATAGAGTTT
GAAATTAAAGTTAATGGAGT
Found at i:12768118 original size:37 final size:37
Alignment explanation
Indices: 12768072--12768146 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
12768062 TAAGTTGAAA
* *
12768072 TTAATTTCAAAATTAAAATAC-ATGTTT-AAATTTAAAT
1 TTAAATTCAAAA-TAAAATACTA-GTTTGAAATTAAAAT
12768109 TTAAATTCAAAATAAAATACTAGTTTGAAATTAAAAT
1 TTAAATTCAAAATAAAATACTAGTTTGAAATTAAAAT
12768146 T
1 T
12768147 ATAGTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 12 0.35
37 22 0.65
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (37 bp):
TTAAATTCAAAATAAAATACTAGTTTGAAATTAAAAT
Found at i:12768145 original size:19 final size:18
Alignment explanation
Indices: 12768081--12768158 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
12768071 ATTAATTTCA
*
12768081 AAATTAAAA-TACATGTTT
1 AAATTAAAATTATA-GTTT
* * *
12768099 AAATTTAAATT-TAAATTC
1 AAATTAAAATTAT-AGTTT
*
12768117 AAAATAAAA-TACTAGTTT
1 AAATTAAAATTA-TAGTTT
12768135 GAAATTAAAATTATAGTTT
1 -AAATTAAAATTATAGTTT
12768154 AAATT
1 AAATT
12768159 TGAAATTAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
17 1 0.02
18 25 0.56
19 17 0.38
20 2 0.04
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (18 bp):
AAATTAAAATTATAGTTT
Found at i:12768147 original size:6 final size:6
Alignment explanation
Indices: 12768136--12768232 Score: 54
Period size: 6 Copynumber: 16.3 Consensus size: 6
12768126 TACTAGTTTG
** * * * * *
12768136 AAATTA AAATTA TAGTTTA AATTTG AAATTA AAATTA AAATTA CATTTG
1 AAATTA AAATTA -AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
* * * * * *
12768185 AAATGA AAATT- AAA-TG AAATTG AAATTA AAGTTG AAATGA AAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
12768231 AA
1 AA
12768233 TTCTAAATTA
Statistics
Matches: 67, Mismatches: 21, Indels: 6
0.71 0.22 0.06
Matches are distributed among these distances:
4 1 0.01
5 6 0.09
6 56 0.84
7 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.09, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:12768160 original size:25 final size:24
Alignment explanation
Indices: 12768097--12768248 Score: 102
Period size: 24 Copynumber: 6.4 Consensus size: 24
12768087 AAATACATGT
*
12768097 TTAAATTTAAATTT-AAATTCAAAA
1 TTAAAATTAAATTTGAAATT-AAAA
*
12768121 -TAAAA-TACTAGTTTGAAATTAAAA
1 TTAAAATTA--AATTTGAAATTAAAA
**
12768145 TTATAGTTTAAATTTGAAATTAAAA
1 TTA-AAATTAAATTTGAAATTAAAA
* *
12768170 TTAAAATTACATTTGAAATGAAAA
1 TTAAAATTAAATTTGAAATTAAAA
* *
12768194 TT-AAATGAAA-TTGAAATTAAAG
1 TTAAAATTAAATTTGAAATTAAAA
* * * *
12768216 TTGAAATGAAAATT-AAATTCTAAA
1 TTAAAATTAAATTTGAAATT-AAAA
12768240 TT-AAATTAA
1 TTAAAATTAA
12768249 TAAGAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 19
0.75 0.12 0.14
Matches are distributed among these distances:
22 14 0.14
23 29 0.28
24 33 0.32
25 24 0.23
26 1 0.01
27 2 0.02
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (24 bp):
TTAAAATTAAATTTGAAATTAAAA
Found at i:12768167 original size:12 final size:12
Alignment explanation
Indices: 12768152--12768248 Score: 76
Period size: 12 Copynumber: 8.3 Consensus size: 12
12768142 AAATTATAGT
*
12768152 TTAAATTTGAAA
1 TTAAAATTGAAA
*
12768164 TTAAAATTAAAA
1 TTAAAATTGAAA
* *
12768176 TTACATTTGAAA
1 TTAAAATTGAAA
*
12768188 TGAAAATT-AAA
1 TTAAAATTGAAA
*
12768199 -TGAAATTGAAA
1 TTAAAATTGAAA
*
12768210 TTAAAGTTGAAA
1 TTAAAATTGAAA
*
12768222 TGAAAATT-AAA
1 TTAAAATTGAAA
*
12768233 TTCTAAATT-AAA
1 TT-AAAATTGAAA
12768245 TTAA
1 TTAA
12768249 TAAGAATTTA
Statistics
Matches: 65, Mismatches: 17, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
10 5 0.08
11 11 0.17
12 49 0.75
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (12 bp):
TTAAAATTGAAA
Found at i:12768173 original size:18 final size:18
Alignment explanation
Indices: 12768167--12768248 Score: 82
Period size: 18 Copynumber: 4.7 Consensus size: 18
12768157 TTTGAAATTA
*
12768167 AAATTAAAATTACATTTG
1 AAATTAAAATTAAATTTG
*
12768185 AAATGAAAATTAAA--TG
1 AAATTAAAATTAAATTTG
* *
12768201 AAATTGAAATTAAAGTTG
1 AAATTAAAATTAAATTTG
*
12768219 AAATGAAAATTAAATTCT-
1 AAATTAAAATTAAATT-TG
12768237 AAATT-AAATTAA
1 AAATTAAAATTAA
12768249 TAAGAATTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
16 14 0.26
17 7 0.13
18 31 0.58
19 1 0.02
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (18 bp):
AAATTAAAATTAAATTTG
Found at i:12768185 original size:49 final size:49
Alignment explanation
Indices: 12768102--12768196 Score: 133
Period size: 49 Copynumber: 1.9 Consensus size: 49
12768092 CATGTTTAAA
*
12768102 TTTAAATTTAAATTCAAAATAAAATACTAGTTTGAAATTAAAATTATAG
1 TTTAAATTTAAATTCAAAATAAAATACTAGTTTGAAATGAAAATTATAG
12768151 TTTAAATTTGAAATT-AAAATTAAAATTAC-A-TTTGAAATGAAAATTA
1 TTTAAATTT-AAATTCAAAA-TAAAA-TACTAGTTTGAAATGAAAATTA
12768197 AATGAAATTG
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
49 28 0.67
50 11 0.26
51 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (49 bp):
TTTAAATTTAAATTCAAAATAAAATACTAGTTTGAAATGAAAATTATAG
Found at i:12768211 original size:34 final size:34
Alignment explanation
Indices: 12768167--12768233 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
12768157 TTTGAAATTA
* *
12768167 AAATTAAAATTACATTTGAAATGAAAATTAAATG
1 AAATTAAAATTAAAGTTGAAATGAAAATTAAATG
*
12768201 AAATTGAAATTAAAGTTGAAATGAAAATTAAAT
1 AAATTAAAATTAAAGTTGAAATGAAAATTAAAT
12768234 TCTAAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.57, C:0.01, G:0.10, T:0.31
Consensus pattern (34 bp):
AAATTAAAATTAAAGTTGAAATGAAAATTAAATG
Found at i:12768443 original size:24 final size:22
Alignment explanation
Indices: 12768411--12768469 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
12768401 AATTTAAACT
*
12768411 TTAAATTAATAAAGTTTAAAAAAA
1 TTAATTTAATAAAG--TAAAAAAA
*
12768435 TTAATTTAAAATAAAGTAAAAAAT
1 TTAATTT--AATAAAGTAAAAAAA
12768459 TTAAGTTTAAT
1 TTAA-TTTAAT
12768470 CTTACAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 17 0.57
25 3 0.10
26 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (22 bp):
TTAATTTAATAAAGTAAAAAAA
Found at i:12768451 original size:26 final size:25
Alignment explanation
Indices: 12768418--12768468 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
12768408 ACTTTAAATT
12768418 AATAAAGTTTAAAAAAATTAA-TTTAA
1 AATAAAG--TAAAAAAATTAAGTTTAA
*
12768444 AATAAAGTAAAAAATTTAAGTTTAA
1 AATAAAGTAAAAAAATTAAGTTTAA
12768469 TCTTACAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 5 0.22
26 7 0.30
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (25 bp):
AATAAAGTAAAAAAATTAAGTTTAA
Found at i:12768487 original size:6 final size:6
Alignment explanation
Indices: 12768481--12768597 Score: 95
Period size: 6 Copynumber: 20.7 Consensus size: 6
12768471 TTACAATTTA
* * * *
12768481 AAATT- AAATTA AAATTT AAA-TA AAATTG AAATTG AAA-TG AAATTT
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG
* * * * *
12768526 AAATTT AAATTT AAATTT AAATTG AAGTTG AAATTT AAA-TG AAATTG
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG
*
12768573 AAA-TG AAATTA AAATT- AAA-TG AAAT
1 AAATTG AAATTG AAATTG AAATTG AAAT
12768598 ATAATTTAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
4 1 0.01
5 29 0.31
6 65 0.68
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (6 bp):
AAATTG
Found at i:12768494 original size:11 final size:11
Alignment explanation
Indices: 12768478--12768620 Score: 92
Period size: 12 Copynumber: 12.5 Consensus size: 11
12768468 ATCTTACAAT
12768478 TTAAAATTAAA
1 TTAAAATTAAA
12768489 TTAAAATTTAAA
1 TTAAAA-TTAAA
12768501 -TAAAATTGAAA
1 TTAAAATT-AAA
* *
12768512 TTGAAATGAAA
1 TTAAAATTAAA
*
12768523 TTTAAATTTAAA
1 -TTAAAATTAAA
*
12768535 TTTAAATTTAAA
1 -TTAAAATTAAA
* *
12768547 TTGAAGTTGAAA
1 TTAAAATT-AAA
* *
12768559 TTTAAATGAAA
1 TTAAAATTAAA
* *
12768570 TTGAAATGAAA
1 TTAAAATTAAA
12768581 TTAAAATTAAA
1 TTAAAATTAAA
* *
12768592 -TGAAATATAAT
1 TTAAAAT-TAAA
*
12768603 TTAAAATTCAAT
1 TTAAAATT-AAA
12768615 TTAAAA
1 TTAAAA
12768621 ATTGCATTGA
Statistics
Matches: 108, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
10 7 0.06
11 49 0.45
12 52 0.48
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.37
Consensus pattern (11 bp):
TTAAAATTAAA
Found at i:12768573 original size:17 final size:17
Alignment explanation
Indices: 12768475--12768576 Score: 97
Period size: 17 Copynumber: 6.2 Consensus size: 17
12768465 TTAATCTTAC
* *
12768475 AATTTAAAATTAAATTAA
1 AATTT-AAATGAAATTGA
*
12768493 AATTTAAATAAAATTGA
1 AATTTAAATGAAATTGA
* *
12768510 AATTGAAATGAAATTTA
1 AATTTAAATGAAATTGA
12768527 AATTTAAAT----TT-A
1 AATTTAAATGAAATTGA
*
12768539 AATTTAAATTGAAGTTGA
1 AATTTAAA-TGAAATTGA
12768557 AATTTAAATGAAATTGA
1 AATTTAAATGAAATTGA
12768574 AAT
1 AAT
12768577 GAAATTAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
12 9 0.13
13 3 0.04
17 45 0.63
18 14 0.20
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (17 bp):
AATTTAAATGAAATTGA
Found at i:12768587 original size:17 final size:17
Alignment explanation
Indices: 12768481--12768597 Score: 83
Period size: 17 Copynumber: 6.5 Consensus size: 17
12768471 TTACAATTTA
* *
12768481 AAATTAAATTAAAATTT
1 AAATGAAATTAAAATTG
* *
12768498 AAATAAAATTGAAATTG
1 AAATGAAATTAAAATTG
* *
12768515 AAATGAAATTTAAATTT
1 AAATGAAATTAAAATTG
* *
12768532 AAATTTAAATTTAAATTG
1 AAA-TGAAATTAAAATTG
*
12768550 AAGTTGAAATTTAAATGAAATTG
1 AA-ATGAAA-TT--A--AAATTG
12768573 AAATGAAATTAAAATT-
1 AAATGAAATTAAAATTG
12768589 AAATGAAAT
1 AAATGAAAT
12768598 ATAATTTAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
16 9 0.11
17 36 0.44
18 18 0.22
19 3 0.04
21 2 0.02
22 5 0.06
23 8 0.10
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATGAAATTAAAATTG
Found at i:12768606 original size:16 final size:16
Alignment explanation
Indices: 12768475--12768607 Score: 79
Period size: 17 Copynumber: 8.5 Consensus size: 16
12768465 TTAATCTTAC
*
12768475 AATTTAAAATTAAATTAA
1 AATTT-AAATGAAATT-A
*
12768493 AATTTAAATAAAATTGA
1 AATTTAAATGAAATT-A
*
12768510 AATTGAAATGAAATTTA
1 AATTTAAATGAAA-TTA
12768527 AATTTAAAT----TTA
1 AATTTAAATGAAATTA
*
12768539 AATTTAAATTGAAGTTGA
1 AATTTAAA-TGAAATT-A
12768557 AATTTAAATG-----A
1 AATTTAAATGAAATTA
*
12768568 AATTGAAATGAAATTA
1 AATTTAAATGAAATTA
*
12768584 AAATTAAATGAAA-TA
1 AATTTAAATGAAATTA
12768599 TAATTTAAA
1 -AATTTAAA
12768608 ATTCAATTTA
Statistics
Matches: 93, Mismatches: 9, Indels: 28
0.72 0.07 0.22
Matches are distributed among these distances:
11 10 0.11
12 11 0.12
13 1 0.01
15 2 0.02
16 19 0.20
17 34 0.37
18 16 0.17
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.37
Consensus pattern (16 bp):
AATTTAAATGAAATTA
Found at i:12768971 original size:22 final size:22
Alignment explanation
Indices: 12768946--12769024 Score: 131
Period size: 22 Copynumber: 3.6 Consensus size: 22
12768936 TTAATGACTT
*
12768946 TAAAATTTTTAATAAAATTAAA
1 TAAAATTTTTAATAAACTTAAA
*
12768968 TAAAATCTTTAATAAACTTAAA
1 TAAAATTTTTAATAAACTTAAA
*
12768990 TACAATTTTTAATAAACTTAAA
1 TAAAATTTTTAATAAACTTAAA
12769012 TAAAATTTTTAAT
1 TAAAATTTTTAAT
12769025 TATTAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAATTTTTAATAAACTTAAA
Found at i:12768973 original size:40 final size:42
Alignment explanation
Indices: 12768923--12769017 Score: 113
Period size: 44 Copynumber: 2.3 Consensus size: 42
12768913 ATAATTAATT
*
12768923 TTAAATAAAATAGTTAAT-GACTT-TAAAATTTTTAATAAAA
1 TTAAATAAAATAGTTAATAAACTTATAAAATTTTTAATAAAA
** * *
12768963 TTAAATAAAATCTTTAATAAACTTAAATACAATTTTTAATAAAC
1 TTAAATAAAATAGTTAATAAACTT--ATAAAATTTTTAATAAAA
12769007 TTAAATAAAAT
1 TTAAATAAAAT
12769018 TTTTAATTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 16 0.35
41 4 0.09
44 26 0.57
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (42 bp):
TTAAATAAAATAGTTAATAAACTTATAAAATTTTTAATAAAA
Found at i:12770301 original size:30 final size:32
Alignment explanation
Indices: 12770265--12770377 Score: 137
Period size: 32 Copynumber: 3.7 Consensus size: 32
12770255 TATGATAAAA
*
12770265 TATATTTACG-AAT-TTTTTTAAATATTTTTT
1 TATATTTTCGAAATATTTTTTAAATATTTTTT
* *
12770295 TATATTTTTG-AAT-TTTTTAAAATA-TTTTT
1 TATATTTTCGAAATATTTTTTAAATATTTTTT
* * *
12770324 TATATTTTTGAAATATTTTTTACATATATTTT
1 TATATTTTCGAAATATTTTTTAAATATTTTTT
12770356 TATATTTTCGAAATATTTTTTA
1 TATATTTTCGAAATATTTTTTA
12770378 GATTTTCGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
29 15 0.21
30 24 0.33
31 9 0.12
32 25 0.34
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (32 bp):
TATATTTTCGAAATATTTTTTAAATATTTTTT
Found at i:12770302 original size:20 final size:20
Alignment explanation
Indices: 12770278--12770355 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
12770268 ATTTACGAAT
**
12770278 TTTTTTAAATATTTTTTTATA
1 TTTTTT-AATATTTTTAAATA
*
12770299 TTTTTGAAT-TTTTTAAAATA
1 TTTTTTAATATTTTT-AAATA
12770319 TTTTTT-ATATTTTTGAAATA
1 TTTTTTAATATTTTT-AAATA
12770339 TTTTTTACATATATTTT
1 TTTTTTA-ATAT-TTTT
12770356 TATATTTTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
19 7 0.15
20 27 0.57
21 5 0.11
22 4 0.09
23 4 0.09
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTTTTAATATTTTTAAATA
Found at i:12770356 original size:32 final size:31
Alignment explanation
Indices: 12770278--12770377 Score: 141
Period size: 32 Copynumber: 3.2 Consensus size: 31
12770268 ATTTACGAAT
12770278 TTTTTTAAATATTTTTTTATATTTTTG-AAT-
1 TTTTTTAAATA-TTTTTTATATTTTTGAAATA
*
12770308 TTTTTAAAATATTTTTTATATTTTTGAAATA
1 TTTTTTAAATATTTTTTATATTTTTGAAATA
* *
12770339 TTTTTTACATATATTTTTATATTTTCGAAATA
1 TTTTTTAAATAT-TTTTTATATTTTTGAAATA
12770371 TTTTTTA
1 TTTTTTA
12770378 GATTTTCGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
29 15 0.24
30 13 0.21
31 10 0.16
32 25 0.40
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTTTAAATATTTTTTATATTTTTGAAATA
Found at i:12770375 original size:20 final size:20
Alignment explanation
Indices: 12770314--12770395 Score: 67
Period size: 20 Copynumber: 4.6 Consensus size: 20
12770304 GAATTTTTTA
*
12770314 AAATATTTTTTATATTTTTG
1 AAATATTTTTTATATTTTCG
12770334 AAATA-TTTTT-TA----C-
1 AAATATTTTTTATATTTTCG
*
12770347 ATATA-TTTTTATATTTTCG
1 AAATATTTTTTATATTTTCG
*
12770366 AAATATTTTTTAGATTTTCG
1 AAATATTTTTTATATTTTCG
12770386 -AAT-TTTTTTA
1 AAATATTTTTTA
12770396 AAAAAATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
13 9 0.18
14 2 0.04
18 10 0.20
19 12 0.24
20 18 0.35
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (20 bp):
AAATATTTTTTATATTTTCG
Found at i:12770462 original size:23 final size:22
Alignment explanation
Indices: 12770431--12770488 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
12770421 TTTTTTTTAC
*
12770431 ATATATTTTTTATA-TTTTCGAA
1 ATAT-TTTTTTACATTTTTCGAA
12770453 ATAATTTTTTTACATTTTTCGAA
1 AT-ATTTTTTTACATTTTTCGAA
12770476 ATATTTTTTTACA
1 ATATTTTTTTACA
12770489 AATGAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (22 bp):
ATATTTTTTTACATTTTTCGAA
Found at i:12771059 original size:24 final size:24
Alignment explanation
Indices: 12771030--12771087 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
12771020 GTTCAGATTT
*
12771030 CGAGCTCGAGCCTGACCCTAAGGA
1 CGAGCTCGAGCCCGACCCTAAGGA
12771054 CGAGCTCGAGCCCGACCCTAAGGA
1 CGAGCTCGAGCCCGACCCTAAGGA
*
12771078 CGAGCCCGAG
1 CGAGCTCGAG
12771088 GACGACCTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.24, C:0.36, G:0.31, T:0.09
Consensus pattern (24 bp):
CGAGCTCGAGCCCGACCCTAAGGA
Found at i:12771093 original size:24 final size:24
Alignment explanation
Indices: 12771030--12771094 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
12771020 GTTCAGATTT
*
12771030 CGAGCTCGAGC-CTGACCCTAAGGA
1 CGAGCCCGAGCAC-GACCCTAAGGA
* *
12771054 CGAGCTCGAGCCCGACCCTAAGGA
1 CGAGCCCGAGCACGACCCTAAGGA
*
12771078 CGAGCCCGAGGACGACC
1 CGAGCCCGAGCACGACC
12771095 TCGAGCCCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 36 0.97
25 1 0.03
ACGTcount: A:0.25, C:0.37, G:0.31, T:0.08
Consensus pattern (24 bp):
CGAGCCCGAGCACGACCCTAAGGA
Found at i:12771583 original size:24 final size:27
Alignment explanation
Indices: 12771525--12771588 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 27
12771515 TTTCTTTTCG
12771525 TTTATTTTTTAAATTTAATTTGTAATATCA
1 TTTATTTTTTAAATTTAATTTG--ATA-CA
12771555 TTTATTTTTTAAATTTAATTTG-TA-A
1 TTTATTTTTTAAATTTAATTTGATACA
12771580 -TTATTTTTT
1 TTTATTTTTT
12771589 TCAATATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 9 0.26
25 1 0.03
27 2 0.06
30 22 0.65
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTATTTTTTAAATTTAATTTGATACA
Found at i:12772570 original size:57 final size:58
Alignment explanation
Indices: 12772439--12772638 Score: 153
Period size: 57 Copynumber: 3.5 Consensus size: 58
12772429 TATTTTTGGA
* * *
12772439 TGTCGGCCATGGGTTGACAAACACCTAAAAATATAATTTTTGGATATGAAAAAAGAGG
1 TGTCGACCATGAGTTGGCAAACACCTAAAAATATAATTTTTGGATATGAAAAAAGAGG
* * * *
12772497 TGTCGTCCAT-ATGTTGGCAAACATCC-GAAAA-ATAA-TTTTGGATATCTGGAAAAGGA-G
1 TGTCGACCATGA-GTTGGCAAACA-CCTAAAAATATAATTTTTGGATA--TGAAAAAAGAGG
* * * * * *
12772554 TGTCGACCATGAGTTGGTAGACACCCAAAAATAT-TTTTTTGTATGTGAAAAAAG-GG
1 TGTCGACCATGAGTTGGCAAACACCTAAAAATATAATTTTTGGATATGAAAAAAGAGG
* * * *
12772610 ATGTCGACCATAACTTGGTAGACACCTAA
1 -TGTCGACCATGAGTTGGCAAACACCTAA
12772639 TTTTTTTTCA
Statistics
Matches: 114, Mismatches: 18, Indels: 21
0.75 0.12 0.14
Matches are distributed among these distances:
56 19 0.17
57 52 0.46
58 41 0.36
59 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (58 bp):
TGTCGACCATGAGTTGGCAAACACCTAAAAATATAATTTTTGGATATGAAAAAAGAGG
Found at i:12773421 original size:15 final size:15
Alignment explanation
Indices: 12773381--12773421 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
12773371 AATTTTTTTG
12773381 AATCAAATCGAATAA
1 AATCAAATCGAATAA
12773396 AA--AAATTTCGAATAA
1 AATCAAA--TCGAATAA
12773411 AATCAAATCGA
1 AATCAAATCGA
12773422 GTTAACGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
13 3 0.14
15 16 0.73
17 3 0.14
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (15 bp):
AATCAAATCGAATAA
Found at i:12777482 original size:61 final size:61
Alignment explanation
Indices: 12777369--12777483 Score: 167
Period size: 61 Copynumber: 1.9 Consensus size: 61
12777359 TTTATTGAAA
* ** * *
12777369 TTTTTAGAATTAGAATTAAATTGACAAATTTTGTAAATGTTGATCGTCAAATTTAATGAGT
1 TTTTTAGAATTAGAATTAAATTGACAAATTTTATAAACATTAAGCGTCAAATTTAATGAGT
* *
12777430 TTTTTAGAATTAGAATTAAATTGACAAATTTTATAAACATTAAGGGTTAAATTT
1 TTTTTAGAATTAGAATTAAATTGACAAATTTTATAAACATTAAGCGTCAAATTT
12777484 GTTCTATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (61 bp):
TTTTTAGAATTAGAATTAAATTGACAAATTTTATAAACATTAAGCGTCAAATTTAATGAGT
Found at i:12780605 original size:82 final size:79
Alignment explanation
Indices: 12780498--12780649 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 79
12780488 TGTGACCATG
* * * *
12780498 GGGCAGATTGAAGCCATCCAATTTTTTACCGTAACTGGAGGGCAGATTCAAGACACCATCCAATC
1 GGGCAGATAGAAGCCATCCAATTTTTTACCCTAACTAGAGGGCAAATTCAAG--ACCATCCAATC
12780563 TCTTACCCTAACCAGA
64 TCTTACCCTAACCAGA
*
12780579 GGGCAGATAGAAGACCATCCAATTTTTTACCCTAACTAGAGGGCAAATTGAAGACCATCCAATCT
1 GGGCAGATAGAAG-CCATCCAATTTTTTACCCTAACTAGAGGGCAAATTCAAGACCATCCAATCT
*
12780644 TTTACC
65 CTTACC
12780650 TATTTAGAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 17 0.27
81 12 0.19
82 35 0.55
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (79 bp):
GGGCAGATAGAAGCCATCCAATTTTTTACCCTAACTAGAGGGCAAATTCAAGACCATCCAATCTC
TTACCCTAACCAGA
Done.