Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 47 of 120
Found at i:13254065 original size:28 final size:27
Alignment explanation
Indices: 13253995--13254058 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 27
13253985 CGGATTCGAT
13253995 AAAGAAAAATAAAAATAAAAAAGAAAGA
1 AAAGAAAAATAAAAATAAAAAAG-AAGA
13254023 AAAGAAAAATAAAAATAAAAAAG-AGA
1 AAAGAAAAATAAAAATAAAAAAGAAGA
13254049 AAAGGAAAAA
1 AAA-GAAAAA
13254059 AGGAAAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
26 6 0.17
27 6 0.17
28 23 0.66
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (27 bp):
AAAGAAAAATAAAAATAAAAAAGAAGA
Found at i:13255123 original size:50 final size:50
Alignment explanation
Indices: 13254978--13255804 Score: 568
Period size: 49 Copynumber: 16.8 Consensus size: 50
13254968 CAGGTTTGAC
* * ** * *
13254978 AGGG-AAGGATTGAGGCCGCGACGGTGAATTCGGTACCTTAA-AAGATGTTA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACC-TAAGAAGATGTGA
* *
13255028 AGGGAAAGGTTGAGG-C-CAGATGGCGAACCCAATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCA-ACGGCGAACCCGATACCTAAGAAGATGTGA
* *
13255077 TGGGAAAGGTTGAGGCCGCAACGGCCAACCCGATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * * *
13255127 TGGGAAAGGTTGAGGTCGTAACGGCGAACCCGGTACC-ATGAAGA-GATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATG-TGA
* * * * * *
13255176 AGGG-AAGGATTGAGGCCACGATGGCGAATCCGGTACCTAAGAAGATGCGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * * **
13255226 TGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACC-ACGAAGATACGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * **
13255275 AGGGAAAGGTTGAGGCGGCAACGGTGAACCC-AGTACC-ATA-AAGATGCAA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGA-TACCTA-AGAAGATGTGA
* * * * * * * * *
13255324 AGGGAAAGGTTCAGGACACAACGACGAATCTGGTACC-ATGAAGATATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * *
13255373 AGGGAAAGGTTGAGGCCGCAATGGCGAACCCGATACTTTAGAAGTTGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * ** * *
13255423 TGGG-AAGGATTGAGGCAGCAACGACGAATTC-AGTACC-ATGAA-ATATGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGA-TACCTAAGAAGATGTGA
* * * * * * **
13255471 TGGGTAAGGTTGAGGTCGCAACGACAAACCCGATACC-ATGAAGAT-AAA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
** * *
13255519 AGGGAAAGGTTGAGGTAGCAACGGCGAATCCGATACCTTAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * * * *
13255569 TGGG-AAGGATTGAGGCCGCAACGGTGAATCCGGTACC-ATGAAGATGTGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * ** * *
13255618 AGGGAAAGGTTGAGGTCGTAACGGTAAACTCGGTACCTTAA-AAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACC-TAAGAAGATGTGA
* * *** * * * * *
13255668 TGGG-AAGGATTGAGGCTGCAATAACGAATCTGGTACC-ATGAAGATGCGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* * *
13255717 AGGGAAAGGTTGAGGCTGCAACGACGAACCCGATACCTTAGAAGATGT-A
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
* *
13255766 ATGGGAAAGGTTGAGGCCGCAATGGCGAACCTGATACCT
1 A-GGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCT
13255805 TAAAAATATA
Statistics
Matches: 611, Mismatches: 135, Indels: 62
0.76 0.17 0.08
Matches are distributed among these distances:
48 76 0.12
49 282 0.46
50 241 0.39
51 12 0.02
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (50 bp):
AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGA
Found at i:13255170 original size:99 final size:98
Alignment explanation
Indices: 13254982--13255804 Score: 605
Period size: 99 Copynumber: 8.3 Consensus size: 98
13254972 TTTGACAGGG
* * ** * *
13254982 AAGGATTGAGGCCGCGACGGTGAATTCGGTACCTTAA-AAGATGTTAAGGGAAAGGTTGAGGC-C
1 AAGG-TTGAGGCCGCAACGGCGAACCCGATACC-TAAGAAGATGTGAAGGGAAAGGTTGAGGCGC
* ** *
13255045 AGATGGCGAACCCAATACCTAAGAAGATGTGATGGGA
64 A-ACGGCGAACCCGGTACC-ATGAAGATGTGATGGGA
* * *
13255082 AAGGTTGAGGCCGCAACGGCCAACCCGATACCTAAGAAGATGTGATGGGAAAGGTTGAGGTCGTA
1 AAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGG-CGCA
*
13255147 ACGGCGAACCCGGTACCATGAAGA-GATGAAGGG-
65 ACGGCGAACCCGGTACCATGAAGATG-TGATGGGA
* * * * * * *
13255180 AAGGATTGAGGCCACGATGGCGAATCCGGTACCTAAGAAGATGCGATGGGAAAGGTTGAGGCCGC
1 AAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGG-CGC
* * ** *
13255245 AACGGTGAACCCGGTACCACGAAGATACGAAGGGA
64 AACGGCGAACCCGGTACCATGAAGATGTGATGGGA
* * ** * *
13255280 AAGGTTGAGGCGGCAACGGTGAACCC-AGTACC-ATA-AAGATGCAAAGGGAAAGGTTCAGGACA
1 AAGGTTGAGGCCGCAACGGCGAACCCGA-TACCTA-AGAAGATGTGAAGGGAAAGGTTGAGG-CG
* * * * *
13255342 CAACGACGAATCTGGTACCATGAAGATATGAAGGGA
63 CAACGGCGAACCCGGTACCATGAAGATGTGATGGGA
* * * * *
13255378 AAGGTTGAGGCCGCAATGGCGAACCCGATACTTTAGAAGTTGTGATGGG-AAGGATTGAGGCAGC
1 AAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGG-TTGAGGC-GC
* ** * * *
13255442 AACGACGAATTCAGTACCATGAA-ATATGATGGGT
64 AACGGCGAACCCGGTACCATGAAGATGTGATGGGA
* * * * ** *
13255476 AAGGTTGAGGTCGCAACGACAAACCCGATACC-ATGAAGAT-AAAAGGGAAAGGTTGAGGTAGCA
1 AAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGG-CGCA
* * *
13255539 ACGGCGAATCCGATACCTTAGAAGATGTGATGGG-
65 ACGGCGAACCCGGTACCAT-GAAGATGTGATGGGA
* * * * *
13255573 AAGGATTGAGGCCGCAACGGTGAATCCGGTACC-ATGAAGATGTGAAGGGAAAGGTTGAGGTCGT
1 AAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGG-CGC
** * * *
13255637 AACGGTAAACTCGGTACCTTAAAAGATGTGATGGG-
64 AACGGCGAACCCGGTACCAT-GAAGATGTGATGGGA
* *** * * * * *
13255672 AAGGATTGAGGCTGCAATAACGAATCTGGTACC-ATGAAGATGCGAAGGGAAAGGTTGAGGCTGC
1 AAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGGC-GC
* * * *
13255736 AACGACGAACCCGATACCTTAGAAGATGTAATGGGA
64 AACGGCGAACCCGGTACCAT-GAAGATGTGATGGGA
* *
13255772 AAGGTTGAGGCCGCAATGGCGAACCTGATACCT
1 AAGGTTGAGGCCGCAACGGCGAACCCGATACCT
13255805 TAAAAATATA
Statistics
Matches: 585, Mismatches: 115, Indels: 46
0.78 0.15 0.06
Matches are distributed among these distances:
96 27 0.05
97 16 0.03
98 169 0.29
99 345 0.59
100 27 0.05
101 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (98 bp):
AAGGTTGAGGCCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCGCAA
CGGCGAACCCGGTACCATGAAGATGTGATGGGA
Found at i:13255837 original size:49 final size:50
Alignment explanation
Indices: 13255719--13255837 Score: 150
Period size: 50 Copynumber: 2.4 Consensus size: 50
13255709 AGATGCGAAG
* * * **
13255719 GGAAAGGTTGAGGCTGCAACGACGAACCCGATACCTTAGAAGATGTAATG
1 GGAAAGGTTGAGGCTGCAATGACGAACCCGATACCTTAGAAAATATAACA
* * *
13255769 GGAAAGGTTGAGGCCGCAATGGCGAACCTGATACCTTA-AAAATATAACA
1 GGAAAGGTTGAGGCTGCAATGACGAACCCGATACCTTAGAAAATATAACA
*
13255818 GGAAAGATTGAGGCTGCAAT
1 GGAAAGGTTGAGGCTGCAAT
13255838 AGTGAGTCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
49 25 0.42
50 34 0.58
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (50 bp):
GGAAAGGTTGAGGCTGCAATGACGAACCCGATACCTTAGAAAATATAACA
Found at i:13256286 original size:78 final size:78
Alignment explanation
Indices: 13256101--13256674 Score: 588
Period size: 78 Copynumber: 7.4 Consensus size: 78
13256091 AACTTGGGGT
* ** * * *
13256101 AGATCACCATCAACCAATCTCTTACCCTAAGCCT-GGGTAGATTGTAGTCATCCGATCTCTTACT
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
* *
13256165 TCGCGCCTG-GGT
66 TCGAGCCTGAGGC
*
13256177 AGATCACCATCAGCCAATCTCTTATCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
13256242 TCGAGCCTGAGGC
66 TCGAGCCTGAGGC
* * * *
13256255 AGATCACCATAAGCCAATCTCTTACCCCGAGCTTGGGGTA-ACTTGCAGCCATTCAATCTCTTAC
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGA-TTGCAGCCATCCGATCTCTTAC
* *
13256319 C-CTGAGCCTGGGGT
65 CTC-GAGCCTGAGGC
* * * * *
13256333 AGATCACCATCAGCCAATTTCTTACCCCGAGCCTGAGGCAGAATGCAGCCATCCGATCTCTTACG
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
* *
13256398 TCGACGAGCTTAGGGC
66 TCGA-G-CCTGA-GGC
* * * * *
13256414 AGATCACCATCAGCCAATCTCTTACCTCAAGCCT-GGGCAAATTTCAGCCATCCGATCTCTTACC
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
* *
13256478 CCGAGCCTAAGGC
66 TCGAGCCTGAGGC
* * * * * ** *
13256491 AGATCACTACCAGACAATCTCTTACCCAGAGCCTAGGACAGATTGCAGCCATTCGATCTCTTACC
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
* *
13256556 TCGAGCCTGGGGA
66 TCGAGCCTGAGGC
* * * * * *
13256569 AGATCACCATTAGCCAATCTTTTACCCCGAGCTTGCGATAGA-T-CA-CCATCAGCCAATCTCTT
1 AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCAT---CCGATCTCTT
*
13256631 ACCTCGAGCCTGAGGT
63 ACCTCGAGCCTGAGGC
* *
13256647 AGATCACCATCATCTAATCTCTTACCCC
1 AGATCACCATCAGCCAATCTCTTACCCC
13256675 AATCATGGGG
Statistics
Matches: 413, Mismatches: 72, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
75 4 0.01
76 32 0.08
77 69 0.17
78 241 0.58
79 4 0.01
80 30 0.07
81 33 0.08
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (78 bp):
AGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGTAGATTGCAGCCATCCGATCTCTTACC
TCGAGCCTGAGGC
Found at i:13256511 original size:236 final size:232
Alignment explanation
Indices: 13256095--13256600 Score: 635
Period size: 236 Copynumber: 2.2 Consensus size: 232
13256085 ACTCCGAACT
* * ** * * * *
13256095 TGGGGTAGATCACCATCAACCAATCTCTTACCCTAAGCCTGGGTAGATTGTAGTCATCCGATCTC
1 TGGGGTAGATCACCATCAGCCAATTTCTTACCCCGAGCCTGGGCAGAATGCAGCCATCCGATCTC
* * * * *
13256160 TTACTTCGCGCCTGGGTAGATCACCATCAGCCAATCTCTTATCCCGAGCCTGGGGTAGATTGCAG
66 TTACGTCGCGCCTGGGCAGATCACCATCAGCCAATCTCTTATCCCAAGCCTGGGGCAAATTGCAG
* * * * * * *
13256225 CCATCCGATCTCTTACCTCGAGCCTGAGGCAGATCACCATAAGCCAATCTCTTACCCCGAGCTTG
131 CCATCCGATCTCTTACCCCGAGCCTAAGGCAGATCACCACAAGACAATCTCTTACCCAGAGCCTA
**
13256290 GGGTA-ACTTGCAGCCATTCAATCTCTTACC-CTGAGCC
196 GGACAGA-TTGCAGCCATTCAATCTCTTACCTC-GAGCC
13256327 TGGGGTAGATCACCATCAGCCAATTTCTTACCCCGAGCCTGAGGCAGAATGCAGCCATCCGATCT
1 TGGGGTAGATCACCATCAGCCAATTTCTTACCCCGAGCCTG-GGCAGAATGCAGCCATCCGATCT
*
13256392 CTTACGTCGACGAGCTTAGGGCAGATCACCATCAGCCAATCTCTTA-CCTCAAGCCT-GGGCAAA
65 CTTACGTCG-C--GCCT-GGGCAGATCACCATCAGCCAATCTCTTATCC-CAAGCCTGGGGCAAA
* * *
13256455 TTTCAGCCATCCGATCTCTTACCCCGAGCCTAAGGCAGATCACTACCAGACAATCTCTTACCCAG
125 TTGCAGCCATCCGATCTCTTACCCCGAGCCTAAGGCAGATCACCACAAGACAATCTCTTACCCAG
*
13256520 AGCCTAGGACAGATTGCAGCCATTCGATCTCTTACCTCGAGCC
190 AGCCTAGGACAGATTGCAGCCATTCAATCTCTTACCTCGAGCC
* *
13256563 TGGGGAAGATCACCATTAGCCAATCTT-TTACCCCGAGC
1 TGGGGTAGATCACCATCAGCCAAT-TTCTTACCCCGAGC
13256601 TTGCGATAGA
Statistics
Matches: 236, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
232 37 0.16
233 27 0.11
234 1 0.00
236 134 0.57
237 37 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (232 bp):
TGGGGTAGATCACCATCAGCCAATTTCTTACCCCGAGCCTGGGCAGAATGCAGCCATCCGATCTC
TTACGTCGCGCCTGGGCAGATCACCATCAGCCAATCTCTTATCCCAAGCCTGGGGCAAATTGCAG
CCATCCGATCTCTTACCCCGAGCCTAAGGCAGATCACCACAAGACAATCTCTTACCCAGAGCCTA
GGACAGATTGCAGCCATTCAATCTCTTACCTCGAGCC
Found at i:13256594 original size:39 final size:39
Alignment explanation
Indices: 13256155--13256672 Score: 243
Period size: 39 Copynumber: 13.3 Consensus size: 39
13256145 TAGTCATCCG
* * * *
13256155 ATCTCTTACTTCGCGCCT-GGGTAGATCACCATCAGCCA
1 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
* *
13256193 ATCTCTTATCC-CGAGCCTGGGGTAGATTGCAGCCA-T--CCG
1 ATCTCTTA-CCTCGAGCCTGGGGAAGA-T-CA-CCATTAGCCA
* * *
13256232 ATCTCTTACCTCGAGCCTGAGGCAGATCACCATAAGCCA
1 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
* * **
13256271 ATCTCTTACCCCGAGCTTGGGGTAACTTGCAGCCATT---CA
1 ATCTCTTACCTCGAGCCTGGGG-AAGAT-CA-CCATTAGCCA
* *
13256310 ATCTCTTACC-CTGAGCCTGGGGTAGATCACCATCAGCCA
1 ATCTCTTACCTC-GAGCCTGGGGAAGATCACCATTAGCCA
* * * * *
13256349 ATTTCTTACCCCGAGCCTGAGGCAGAATGCAGCCA-T--CCG
1 ATCTCTTACCTCGAGCCTGGGGAAG-AT-CA-CCATTAGCCA
* * * * *
13256388 ATCTCTTACGTCGACGAGCTTAGGGCAGATCACCATCAGCCA
1 ATCTCTTAC--C-TCGAGCCTGGGGAAGATCACCATTAGCCA
* * *
13256430 ATCTCTTACCTCAAGCCTGGGCAA-ATTTCAGCCA-T--CCG
1 ATCTCTTACCTCGAGCCTGGGGAAGA--TCA-CCATTAGCCA
* ** * * ** *
13256468 ATCTCTTACCCCGAGCCTAAGGCAGATCACTACCAGACA
1 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
* *
13256507 ATCTCTTACC-CAGAGCCT-AGGACAGATTGCAGCCATT---CG
1 ATCTCTTACCTC-GAGCCTGGGGA-AGA-T-CA-CCATTAGCCA
13256546 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
1 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
* * * * *
13256585 ATCTTTTACCCCGAG-CTTGCGATAGATCACCATCAGCCA
1 ATCTCTTACCTCGAGCCTGGGGA-AGATCACCATTAGCCA
* * * * *
13256624 ATCTCTTACCTCGAGCCTGAGGTAGATCACCATCATCTA
1 ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
13256663 ATCTCTTACC
1 ATCTCTTACC
13256673 CCAATCATGG
Statistics
Matches: 365, Mismatches: 70, Indels: 89
0.70 0.13 0.17
Matches are distributed among these distances:
36 14 0.04
37 9 0.02
38 51 0.14
39 223 0.61
40 20 0.05
41 14 0.04
42 34 0.09
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (39 bp):
ATCTCTTACCTCGAGCCTGGGGAAGATCACCATTAGCCA
Found at i:13259394 original size:21 final size:19
Alignment explanation
Indices: 13259368--13259424 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 19
13259358 CAGTTCATAT
13259368 TGTTATGTATGTTATGTTAA
1 TGTTATGTATGTTATGTT-A
* *
13259388 CTGTTATGTTTG-TATATT-
1 -TGTTATGTATGTTATGTTA
13259406 TG-TATGTATGTTATGTTA
1 TGTTATGTATGTTATGTTA
13259424 T
1 T
13259425 ATATTGTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 7 0.23
17 7 0.23
18 1 0.03
20 5 0.17
21 10 0.33
ACGTcount: A:0.21, C:0.02, G:0.19, T:0.58
Consensus pattern (19 bp):
TGTTATGTATGTTATGTTA
Found at i:13259413 original size:12 final size:12
Alignment explanation
Indices: 13259398--13259461 Score: 60
Period size: 12 Copynumber: 5.2 Consensus size: 12
13259388 CTGTTATGTT
13259398 TGTATATTTGTA
1 TGTATATTTGTA
*
13259410 TGTATGTTATGT-
1 TGTATATT-TGTA
*
13259422 TATATA-TTGTCA
1 TGTATATTTGT-A
13259434 TGTATATTATGTA
1 TGTATATT-TGTA
*
13259447 TGTATAATTGTA
1 TGTATATTTGTA
13259459 TGT
1 TGT
13259462 TTGTTATGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
10 3 0.07
11 1 0.02
12 23 0.55
13 12 0.29
14 3 0.07
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.55
Consensus pattern (12 bp):
TGTATATTTGTA
Found at i:13259417 original size:25 final size:24
Alignment explanation
Indices: 13259389--13259475 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 24
13259379 TTATGTTAAC
13259389 TGTTATGTTTGTATATTTGTATGTA
1 TGTTATGTTTGTATA-TTGTATGTA
*
13259414 TGTTATG-TTATATATTGTCATGTA
1 TGTTATGTTTGTATATTGT-ATGTA
* * *
13259438 TATTATGTATGTATAATTGTATGTT
1 TGTTATGTTTGTAT-ATTGTATGTA
13259463 TGTTATGTGTTGT
1 TGTTATGT-TTGT
13259476 TTACTGTTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 4 0.08
24 17 0.33
25 22 0.43
26 8 0.16
ACGTcount: A:0.22, C:0.01, G:0.20, T:0.57
Consensus pattern (24 bp):
TGTTATGTTTGTATATTGTATGTA
Found at i:13259498 original size:17 final size:17
Alignment explanation
Indices: 13259463--13259500 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13259453 ATTGTATGTT
*
13259463 TGTTATGTGTTGTTTAC
1 TGTTATGTGTTGTTGAC
13259480 TGTTATGT-TTGTATGAC
1 TGTTATGTGTTGT-TGAC
13259497 TGTT
1 TGTT
13259501 TATTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.13, C:0.05, G:0.24, T:0.58
Consensus pattern (17 bp):
TGTTATGTGTTGTTGAC
Found at i:13261801 original size:79 final size:79
Alignment explanation
Indices: 13261677--13261877 Score: 296
Period size: 79 Copynumber: 2.5 Consensus size: 79
13261667 CTGACTAGTT
* * *
13261677 CTGGGCTCACATTTGCGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGAC-AGATATTGTTGG
1 CTGGGCTCACAATCGCGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGA-ATATTGTTAG
* *
13261741 TTAATCGAACTAGAG
65 TTAATCCAACTAAAG
* *
13261756 CTGGGCTCATAATCGTGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGAATATTGTTAGT
1 CTGGGCTCACAATCGCGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGAATATTGTTAGT
13261821 TAATCCAACTAAAG
66 TAATCCAACTAAAG
* * *
13261835 CTGGGCTCACAATTGCGGTTTATCTGCTTGGCACTGGGTGCCA
1 CTGGGCTCACAATCGCGGTTTATCCGCTAGGCACTGGGTGCCA
13261878 TAATCGTCGA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
79 108 0.99
80 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (79 bp):
CTGGGCTCACAATCGCGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGAATATTGTTAGT
TAATCCAACTAAAG
Found at i:13263667 original size:62 final size:59
Alignment explanation
Indices: 13263561--13263676 Score: 151
Period size: 62 Copynumber: 1.9 Consensus size: 59
13263551 ATCACTTGAA
* * * * *
13263561 TATTAAATTAACATAATATTTACTAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAACAAAATATTTACTAAGATAAACATTAAATTAAATTAAATATTAAATCT
*
13263620 TATTAAAATAATAAAATATTTATCTACAAGATAAACATTAAATTAAATTAAATATTA
1 TATTAAAATAACAAAATATTTA-CT--AAGATAAACATTAAATTAAATTAAATATTA
13263677 TAATAATCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 19 0.40
60 2 0.04
62 27 0.56
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (59 bp):
TATTAAAATAACAAAATATTTACTAAGATAAACATTAAATTAAATTAAATATTAAATCT
Found at i:13269868 original size:36 final size:36
Alignment explanation
Indices: 13269817--13269916 Score: 121
Period size: 36 Copynumber: 2.8 Consensus size: 36
13269807 TGGTAATAGG
* * * *
13269817 CATGACCTTTGGGTCAATAGGGAGTAAAATAAGCAT
1 CATGACCATTAGGTCAACAGGGAGTAAAATAAGCAC
*
13269853 CATGACCATTAGGTCAACAGGGAGTAAAATGAGCAC
1 CATGACCATTAGGTCAACAGGGAGTAAAATAAGCAC
* *
13269889 CATGACC-TTCATGTCAACAGGGTGTAAA
1 CATGACCATT-AGGTCAACAGGGAGTAAA
13269917 GCGAATAACG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 2 0.04
36 54 0.96
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (36 bp):
CATGACCATTAGGTCAACAGGGAGTAAAATAAGCAC
Found at i:13272302 original size:53 final size:49
Alignment explanation
Indices: 13272244--13272431 Score: 233
Period size: 53 Copynumber: 3.8 Consensus size: 49
13272234 TGATGACACA
*
13272244 AAGTCATCGAACCCTTAATCCGTAATAGGATTCATATAACTCACGATGAC
1 AAGTCATCGAA-CCTTAATCCGTGATAGGATTCATATAACTCACGATGAC
* *
13272294 ATATAGTCATCGGACCTTTAATCCATGATAGGATTCATATAACTCACGATGAC
1 --A-AGTCATCGAACC-TTAATCCGTGATAGGATTCATATAACTCACGATGAC
*
13272347 -A--CA--GAACCTTAATCCGTGATAGGATTCATATAACTTACGATGAC
1 AAGTCATCGAACCTTAATCCGTGATAGGATTCATATAACTCACGATGAC
*
13272391 ACAGTCATCGGACCTCTAATCCGTGATAGGATTCATATAAC
1 A-AGTCATCGAACCT-TAATCCGTGATAGGATTCATATAAC
13272432 CTCTAATCTA
Statistics
Matches: 120, Mismatches: 7, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
44 34 0.28
45 4 0.03
46 1 0.01
47 2 0.02
48 2 0.02
49 1 0.01
50 5 0.04
51 25 0.21
52 3 0.03
53 43 0.36
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (49 bp):
AAGTCATCGAACCTTAATCCGTGATAGGATTCATATAACTCACGATGAC
Found at i:13272371 original size:44 final size:46
Alignment explanation
Indices: 13272256--13272431 Score: 194
Period size: 44 Copynumber: 3.6 Consensus size: 46
13272246 GTCATCGAAC
* *
13272256 CCTTAATCCGTAATAGGATTCATATAACTCACGATGACATATAGTCATCGGA
1 CCTTAATCCGTGATAGGATTCATATAACTCACGATGAC--ACAG-CA---GA
*
13272308 CCTTTAATCCATGATAGGATTCATATAACTCACGATGACACAG-A-A
1 CC-TTAATCCGTGATAGGATTCATATAACTCACGATGACACAGCAGA
*
13272353 CCTTAATCCGTGATAGGATTCATATAACTTACGATGACACAGTCATCGGA
1 CCTTAATCCGTGATAGGATTCATATAACTCACGATGACACAG-CA---GA
13272403 CCTCTAATCCGTGATAGGATTCATATAAC
1 CCT-TAATCCGTGATAGGATTCATATAAC
13272432 CTCTAATCTA
Statistics
Matches: 111, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
44 38 0.34
45 3 0.03
46 1 0.01
49 1 0.01
50 4 0.04
51 28 0.25
52 2 0.02
53 34 0.31
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (46 bp):
CCTTAATCCGTGATAGGATTCATATAACTCACGATGACACAGCAGA
Found at i:13272431 original size:95 final size:96
Alignment explanation
Indices: 13272256--13272431 Score: 291
Period size: 95 Copynumber: 1.8 Consensus size: 96
13272246 GTCATCGAAC
* *
13272256 CCTTAATCCGTAATAGGATTCATATAACTCACGATGACATATAGTCATCGGACCTTTAATCCATG
1 CCTTAATCCGTAATAGGATTCATATAACTCACGATGACA-ACAGTCATCGGACCTCTAATCCATG
13272321 ATAGGATTCATATAACTCACGATGACACAGAA
65 ATAGGATTCATATAACTCACGATGACACAGAA
* * *
13272353 CCTTAATCCGTGATAGGATTCATATAACTTACGATGAC-ACAGTCATCGGACCTCTAATCCGTGA
1 CCTTAATCCGTAATAGGATTCATATAACTCACGATGACAACAGTCATCGGACCTCTAATCCATGA
13272417 TAGGATTCATATAAC
66 TAGGATTCATATAAC
13272432 CTCTAATCTA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
95 38 0.51
97 36 0.49
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (96 bp):
CCTTAATCCGTAATAGGATTCATATAACTCACGATGACAACAGTCATCGGACCTCTAATCCATGA
TAGGATTCATATAACTCACGATGACACAGAA
Found at i:13272435 original size:28 final size:28
Alignment explanation
Indices: 13272402--13272563 Score: 94
Period size: 28 Copynumber: 6.1 Consensus size: 28
13272392 CAGTCATCGG
13272402 ACCTCTAATCCGTGATAGGATTCATATA
1 ACCTCTAATCCGTGATAGGATTCATATA
** *
13272430 ACCTCTAATCTATGATAAGATTCATATA
1 ACCTCTAATCCGTGATAGGATTCATATA
* * * **
13272458 A-CTC--A--CGATGACACAGAGTCATCGA
1 ACCTCTAATCCG-TGATA-GGATTCATATA
*
13272483 ACCTCTAATTCGTGATAGGATTCATATA
1 ACCTCTAATCCGTGATAGGATTCATATA
* * * **
13272511 A-CTC--AT--GATGACA-TAGTCATCGA
1 ACCTCTAATCCG-TGATAGGATTCATATA
13272534 ACCTCTAATCCGTGATAGGATTCATATA
1 ACCTCTAATCCGTGATAGGATTCATATA
13272562 AC
1 AC
13272564 TCACAATGAC
Statistics
Matches: 96, Mismatches: 24, Indels: 28
0.65 0.16 0.19
Matches are distributed among these distances:
23 8 0.08
24 11 0.11
25 12 0.12
26 5 0.05
27 10 0.10
28 44 0.46
29 4 0.04
30 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (28 bp):
ACCTCTAATCCGTGATAGGATTCATATA
Found at i:13272509 original size:53 final size:53
Alignment explanation
Indices: 13272429--13272590 Score: 240
Period size: 53 Copynumber: 3.1 Consensus size: 53
13272419 GGATTCATAT
* *
13272429 AACCTCTAA-TCTATGATAAGATTCATATAACTCACGATGACACAGAGTCATCG
1 AACCTCTAATTC-GTGATAGGATTCATATAACTCACGATGACACAGAGTCATCG
* *
13272482 AACCTCTAATTCGTGATAGGATTCATATAACTCATGATG--ACATAGTCATCG
1 AACCTCTAATTCGTGATAGGATTCATATAACTCACGATGACACAGAGTCATCG
* *
13272533 AACCTCTAATCCGTGATAGGATTCATATAACTCACAATGACACAGAGTCATCG
1 AACCTCTAATTCGTGATAGGATTCATATAACTCACGATGACACAGAGTCATCG
13272586 AACCT
1 AACCT
13272591 TTAACCTTTG
Statistics
Matches: 98, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
51 47 0.48
53 49 0.50
54 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (53 bp):
AACCTCTAATTCGTGATAGGATTCATATAACTCACGATGACACAGAGTCATCG
Found at i:13272510 original size:81 final size:79
Alignment explanation
Indices: 13272363--13272512 Score: 246
Period size: 81 Copynumber: 1.9 Consensus size: 79
13272353 CCTTAATCCG
* * *
13272363 TGATAGGATTCATATAACTTACGATGACACAGTCATCGGACCTCTAATCCGTGATAGGATTCATA
1 TGATAAGATTCATATAACTCACGATGACACAGTCATCGAACCTCTAATCCGTGATAGGATTCATA
13272428 TAACCTCTAATCTA
66 TAACCTCTAATCTA
*
13272442 TGATAAGATTCATATAACTCACGATGACACAGAGTCATCGAACCTCTAATTCGTGATAGGATTCA
1 TGATAAGATTCATATAACTCACGATGACAC--AGTCATCGAACCTCTAATCCGTGATAGGATTCA
13272507 TATAAC
64 TATAAC
13272513 TCATGATGAC
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
79 28 0.43
81 37 0.57
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (79 bp):
TGATAAGATTCATATAACTCACGATGACACAGTCATCGAACCTCTAATCCGTGATAGGATTCATA
TAACCTCTAATCTA
Found at i:13304300 original size:29 final size:28
Alignment explanation
Indices: 13304267--13304339 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
13304257 CGTAACTTTC
13304267 ATATTATTTTAATAAATAAT-TTATAACCT
1 ATATTATTTTAATAAATAATATTAT--CCT
* **
13304296 ATATTATTTTAGA-AACTAATATTATTTT
1 ATATTATTTTA-ATAAATAATATTATCCT
13304324 ATATTATTTTAATAAA
1 ATATTATTTTAATAAA
13304340 ACCTCAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
27 1 0.03
28 14 0.38
29 17 0.46
30 5 0.14
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (28 bp):
ATATTATTTTAATAAATAATATTATCCT
Found at i:13304306 original size:17 final size:18
Alignment explanation
Indices: 13304286--13304326 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
13304276 TAATAAATAA
*
13304286 TTTATAACCT-ATATTAT
1 TTTATAAACTAATATTAT
*
13304303 TTTAGAAACTAATATTAT
1 TTTATAAACTAATATTAT
13304321 TTTATA
1 TTTATA
13304327 TTATTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTATAAACTAATATTAT
Found at i:13308181 original size:17 final size:19
Alignment explanation
Indices: 13308161--13308202 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
13308151 TACTAAATAA
*
13308161 TTTATAACCT-ATATT-AT
1 TTTATAAACTAATATTAAT
*
13308178 TTTAGAAACTAATATTAAT
1 TTTATAAACTAATATTAAT
13308197 TTTATA
1 TTTATA
13308203 TTATTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTATAAACTAATATTAAT
Found at i:13319209 original size:17 final size:19
Alignment explanation
Indices: 13319189--13319229 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
13319179 TAATAAATAA
*
13319189 TTTATAACCT-ATATT-AT
1 TTTATAAACTAATATTAAT
*
13319206 TTTAGAAACTAATATTAAT
1 TTTATAAACTAATATTAAT
13319225 TTTAT
1 TTTAT
13319230 TTTAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
17 8 0.42
18 5 0.26
19 6 0.32
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTATAAACTAATATTAAT
Found at i:13323058 original size:29 final size:29
Alignment explanation
Indices: 13323025--13323098 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
13323015 CATAACTTTC
13323025 ATATTATTTTAATAAATAAT-TT-ATAATCT
1 ATATTATTTTAATAAATAATATTAAT-AT-T
*
13323054 ATATTATTTTAGA-AACTAATATTAATATT
1 ATATTATTTTA-ATAAATAATATTAATATT
13323083 ATATTATTTTAATAAA
1 ATATTATTTTAATAAA
13323099 ACCCCAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 1 0.03
29 31 0.79
30 5 0.13
31 2 0.05
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (29 bp):
ATATTATTTTAATAAATAATATTAATATT
Found at i:13330131 original size:48 final size:48
Alignment explanation
Indices: 13330047--13330152 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
13330037 TGGTTTATTA
* ** * * *
13330047 ACAACTATATGTATTGGTAGTTTGTCTGCGATTTTAGTGGCTTTGACC
1 ACAACTATGTGTATTGACAGCTTGTCTGCAAATTTAGTGGCTTTGACC
* *
13330095 ACAACTATGTGTATTGACAGCTTGTTTGCAAATTTAGTGGCTTTGTCC
1 ACAACTATGTGTATTGACAGCTTGTCTGCAAATTTAGTGGCTTTGACC
13330143 AC-AC-ATGTGT
1 ACAACTATGTGT
13330153 TAAGTGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
46 6 0.12
47 2 0.04
48 42 0.84
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.40
Consensus pattern (48 bp):
ACAACTATGTGTATTGACAGCTTGTCTGCAAATTTAGTGGCTTTGACC
Found at i:13335299 original size:38 final size:37
Alignment explanation
Indices: 13335210--13335304 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
13335200 TCTACTATCT
* *
13335210 TGGTGTGCAGGGTGGAAGGACCTACCATAGCCCATTG
1 TGGTGTGCAGGGTGGACGGACCTACCATAGCCAATTG
* * * *
13335247 TGGTGTGCAAGGTGGACGGGCCTACCTTGGCCTAATTG
1 TGGTGTGCAGGGTGGACGGACCTACCATAGCC-AATTG
*
13335285 TGGTGTGTAGGGTGGACGGA
1 TGGTGTGCAGGGTGGACGGA
13335305 ATGGTGTTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
37 27 0.56
38 21 0.44
ACGTcount: A:0.18, C:0.18, G:0.40, T:0.24
Consensus pattern (37 bp):
TGGTGTGCAGGGTGGACGGACCTACCATAGCCAATTG
Found at i:13344729 original size:25 final size:25
Alignment explanation
Indices: 13344701--13344748 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13344691 GGAACTTTGT
*
13344701 AGAAGAGATTGGAGGG-TGCAAATTC
1 AGAAGA-ATTCGAGGGATGCAAATTC
*
13344726 AGAAGATTTCGAGGGATGCAAAT
1 AGAAGAATTCGAGGGATGCAAAT
13344749 ACTGCTGGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.21
Consensus pattern (25 bp):
AGAAGAATTCGAGGGATGCAAATTC
Found at i:13346089 original size:17 final size:17
Alignment explanation
Indices: 13346067--13346100 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13346057 AGGCCAAATA
13346067 AATCAAAAAAAAGATTC
1 AATCAAAAAAAAGATTC
* *
13346084 AATCAAATACAAGATTC
1 AATCAAAAAAAAGATTC
13346101 GAGGATGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.15, G:0.06, T:0.21
Consensus pattern (17 bp):
AATCAAAAAAAAGATTC
Found at i:13348597 original size:21 final size:21
Alignment explanation
Indices: 13348573--13348623 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
13348563 TAGAGGTAAG
**
13348573 ACTTGTATCAGTAGAGGAGTC
1 ACTTGTATCAGTAGAACAGTC
* * *
13348594 ACTTGTTTCGGTAGAACTGTC
1 ACTTGTATCAGTAGAACAGTC
13348615 ACTTGTATC
1 ACTTGTATC
13348624 GATACAAATC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (21 bp):
ACTTGTATCAGTAGAACAGTC
Found at i:13349119 original size:24 final size:25
Alignment explanation
Indices: 13349073--13349129 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
13349063 GATTAATTAG
13349073 AGTTCTT--GTTTTCTTTTCAAGAAT
1 AGTTCTTAAGTTTTCTTTT-AAGAAT
*
13349097 TGTTCTTAAGTTTTCTTTT-AGAAT
1 AGTTCTTAAGTTTTCTTTTAAGAAT
*
13349121 AGTTTTTAA
1 AGTTCTTAA
13349130 CAATCTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 18 0.64
26 10 0.36
ACGTcount: A:0.23, C:0.09, G:0.12, T:0.56
Consensus pattern (25 bp):
AGTTCTTAAGTTTTCTTTTAAGAAT
Found at i:13364811 original size:23 final size:23
Alignment explanation
Indices: 13364781--13364826 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
13364771 TATAGCTTAG
13364781 TAAGTTTGATAGTTAAGAAATAC
1 TAAGTTTGATAGTTAAGAAATAC
13364804 TAAGTTTGATAGTTAAGAAATAC
1 TAAGTTTGATAGTTAAGAAATAC
13364827 CAACATGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.35
Consensus pattern (23 bp):
TAAGTTTGATAGTTAAGAAATAC
Found at i:13368144 original size:17 final size:19
Alignment explanation
Indices: 13368108--13368144 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
13368098 TTAATCTTTA
13368108 CTAATCTGTTGTTATTTTT
1 CTAATCTGTTGTTATTTTT
*
13368127 CTAAT-TGTT-TTCTTTTT
1 CTAATCTGTTGTTATTTTT
13368144 C
1 C
13368145 AGATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 4 0.24
19 5 0.29
ACGTcount: A:0.14, C:0.14, G:0.08, T:0.65
Consensus pattern (19 bp):
CTAATCTGTTGTTATTTTT
Found at i:13388448 original size:53 final size:52
Alignment explanation
Indices: 13388364--13388507 Score: 164
Period size: 53 Copynumber: 2.8 Consensus size: 52
13388354 GCCATAAACG
* * * *
13388364 AAGAGGTCCGATGATTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATT
1 AAGAGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCCTTACGGATT
* **
13388416 AAGAGGGTCCGATGACTCTGTGTCATCATGAGTATATGAATCCCTTGTGGATT
1 AAGA-GGTCCGATGACTATGTGTCATCATGAGTATATGAATCCCTTACGGATT
* * * *
13388469 ATA-AGGTCCGGTGGCTATGTGTCACCATGAGTTTATGAA
1 A-AGAGGTCCGATGACTATGTGTCATCATGAGTATATGAA
13388508 CGAAATGAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 34 0.44
53 43 0.55
54 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (52 bp):
AAGAGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCCTTACGGATT
Found at i:13395660 original size:53 final size:52
Alignment explanation
Indices: 13395519--13395714 Score: 245
Period size: 52 Copynumber: 3.8 Consensus size: 52
13395509 GCCATAAACG
*
13395519 AAGAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAAGGATT
1 AAGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTAAGGATT
* *
13395571 AAGAGGTCCGATGATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATT
1 AAGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTAAGGATT
* * *
13395623 AAGAGGGTCAGATGACTCTGTGTCATCATGAGTATATGAATCCCTTGT-A-GATT
1 AAGA-GGTCCGATGACTATGTGTCATCGTGAGTATATGAAT-CCTT-TAAGGATT
* * * *
13395676 ATA-AGGTTCGGTGTCTATGTGTCACCGTGAGTATATGAA
1 A-AGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAA
13395715 CAAAGTGAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
52 81 0.65
53 38 0.30
54 5 0.04
55 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (52 bp):
AAGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTAAGGATT
Found at i:13395710 original size:105 final size:104
Alignment explanation
Indices: 13395519--13395714 Score: 256
Period size: 105 Copynumber: 1.9 Consensus size: 104
13395509 GCCATAAACG
* *
13395519 AAGAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAAGGATTAAGAGGTCCGATG
1 AAGAGGTCAGATGACTAAGTGTCATCATGAGTATATGAATCCTTTAAGGATTAAGAGGTCCGATG
*
13395584 ATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATT
66 ATTATGTGTCACCGTGAGTATATGAATCCTTTACGGATT
** *
13395623 AAGAGGGTCAGATGACTCTGTGTCATCATGAGTATATGAATCCCTTGT-A-GATTATA-AGGTTC
1 AAGA-GGTCAGATGACTAAGTGTCATCATGAGTATATGAAT-CCTT-TAAGGATTA-AGAGGTCC
*
13395685 GGTG-TCTATGTGTCACCGTGAGTATATGAA
62 GATGAT-TATGTGTCACCGTGAGTATATGAA
13395715 CAAAGTGAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
104 5 0.06
105 68 0.85
106 6 0.08
107 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (104 bp):
AAGAGGTCAGATGACTAAGTGTCATCATGAGTATATGAATCCTTTAAGGATTAAGAGGTCCGATG
ATTATGTGTCACCGTGAGTATATGAATCCTTTACGGATT
Found at i:13399927 original size:10 final size:10
Alignment explanation
Indices: 13399914--13399944 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
13399904 CAACTAATGA
13399914 CAATTTGGAG
1 CAATTTGGAG
13399924 CAATTTGGAG
1 CAATTTGGAG
*
13399934 CAAGTTGGAG
1 CAATTTGGAG
13399944 C
1 C
13399945 GAGATCGGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (10 bp):
CAATTTGGAG
Found at i:13404683 original size:24 final size:24
Alignment explanation
Indices: 13404651--13404699 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
13404641 AATCCTACCA
*
13404651 CATAAGTAGCAAAAGATCAGCAGT
1 CATAAGTAGCAAAAGATCAACAGT
*
13404675 CATAGGTAGCAAAAGATCAACAGT
1 CATAAGTAGCAAAAGATCAACAGT
13404699 C
1 C
13404700 GCTCATACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (24 bp):
CATAAGTAGCAAAAGATCAACAGT
Found at i:13408126 original size:12 final size:12
Alignment explanation
Indices: 13408109--13408187 Score: 61
Period size: 12 Copynumber: 6.3 Consensus size: 12
13408099 ATAACATCCA
13408109 AACAACAAAAAT
1 AACAACAAAAAT
*
13408121 AACAACCAAAAT
1 AACAACAAAAAT
* *
13408133 AGCAGCAAAAAT
1 AACAACAAAAAT
* *
13408145 AATAGCAAAACAAT
1 AACAAC-AAA-AAT
13408159 ATTACAA-AAAAAT
1 A--ACAACAAAAAT
*
13408172 AGCAACAAAAAT
1 AACAACAAAAAT
13408184 AACA
1 AACA
13408188 GTTAAAACAA
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
11 3 0.06
12 33 0.63
13 7 0.13
14 7 0.13
16 2 0.04
ACGTcount: A:0.67, C:0.16, G:0.05, T:0.11
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:13408235 original size:9 final size:10
Alignment explanation
Indices: 13408214--13408268 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
13408204 AATAGTAATC
13408214 AAAACAGTAA
1 AAAACAGTAA
13408224 AAAACAGTAA
1 AAAACAGTAA
* **
13408234 AAAATAACATA
1 AAAACAGTA-A
*
13408245 AAAACAGCAA
1 AAAACAGTAA
*
13408255 AAAATAGTAA
1 AAAACAGTAA
13408265 AAAA
1 AAAA
13408269 ATAGCACCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.73, C:0.09, G:0.07, T:0.11
Consensus pattern (10 bp):
AAAACAGTAA
Found at i:13408268 original size:21 final size:21
Alignment explanation
Indices: 13408214--13408274 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
13408204 AATAGTAATC
* *
13408214 AAAACAGT-AAAAAACAGTAA
1 AAAATAGTAAAAAAACAGCAA
** *
13408234 AAAATAACATAAAAACAGCAA
1 AAAATAGTAAAAAAACAGCAA
*
13408255 AAAATAGTAAAAAAATAGCA
1 AAAATAGTAAAAAAACAGCA
13408275 CCAAAACAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.70, C:0.10, G:0.08, T:0.11
Consensus pattern (21 bp):
AAAATAGTAAAAAAACAGCAA
Found at i:13423077 original size:50 final size:49
Alignment explanation
Indices: 13422998--13423133 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 49
13422988 TAAGGATGAC
*
13422998 ATCTTTTCTTGGTTGTGTTTGCTTT-CACGTTGCTTCCCTTTTTTTTTTTT
1 ATCTTTTCTTGGTTGTGATTG-TTTCCACGTTGCTT-CCTTTTTTTTTTTT
13423048 ATCTTTTCTTGGTTGTGATTGTTTCCACGTTGCTTCC------TTTTTT
1 ATCTTTTCTTGGTTGTGATTGTTTCCACGTTGCTTCCTTTTTTTTTTTT
* * * *
13423091 ATGTTTTCTTGGTTTTGGTTTTTTCCACGTTGCTTCCTTTTTT
1 ATCTTTTCTTGGTTGTGATTGTTTCCACGTTGCTTCCTTTTTT
13423134 CTTGTCAACC
Statistics
Matches: 74, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
43 39 0.53
49 5 0.07
50 30 0.41
ACGTcount: A:0.05, C:0.18, G:0.15, T:0.62
Consensus pattern (49 bp):
ATCTTTTCTTGGTTGTGATTGTTTCCACGTTGCTTCCTTTTTTTTTTTT
Found at i:13431249 original size:15 final size:15
Alignment explanation
Indices: 13431229--13431262 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13431219 TTGAGAATGA
*
13431229 AAAAGAAAGTGAAAG
1 AAAAGAAAGTGAAAC
*
13431244 AAAAGAAATTGAAAC
1 AAAAGAAAGTGAAAC
13431259 AAAA
1 AAAA
13431263 AGAGAGCGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.09
Consensus pattern (15 bp):
AAAAGAAAGTGAAAC
Found at i:13439422 original size:46 final size:45
Alignment explanation
Indices: 13439292--13439405 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 45
13439282 CGATAATGAA
* * * * * *
13439292 ATGTATAAGACCGTAGTCGTAAGATACTACGTCATCAT-TTTTAAT
1 ATGTATAAGACCATAGTTGAAAGATATTACGACATCATATTCT-AT
13439337 ATGTATAAGACCATAGTTGAAAGATATTACGACATCATATTCTAT
1 ATGTATAAGACCATAGTTGAAAGATATTACGACATCATATTCTAT
13439382 ATGTTATAAGACC-TAAGTTGAAAG
1 ATG-TATAAGACCAT-AGTTGAAAG
13439406 CTACTTTGGC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 39 0.65
46 21 0.35
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (45 bp):
ATGTATAAGACCATAGTTGAAAGATATTACGACATCATATTCTAT
Found at i:13441291 original size:15 final size:16
Alignment explanation
Indices: 13441251--13441294 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
13441241 ATAATTAACA
13441251 TTAATATATATAAATT
1 TTAATATATATAAATT
* *
13441267 TGATTCATATA-AAATT
1 TTAAT-ATATATAAATT
13441283 TTAATATATATA
1 TTAATATATATA
13441295 GTTTACTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
15 5 0.23
16 12 0.55
17 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (16 bp):
TTAATATATATAAATT
Found at i:13441460 original size:49 final size:49
Alignment explanation
Indices: 13441360--13441460 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 49
13441350 AAACATGGTA
* *
13441360 GTTATAATTCTTTTTGGAAAGAATATAACATTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGGAAAGAATATAACAATTTTAATACTTTCCAGAT
** *
13441409 GTTATAATTCTTTTTGGAAAGAATATAACAATTTTAATGTTTTCTAGAT
1 GTTATAATTCTTTTTGGAAAGAATATAACAATTTTAATACTTTCCAGAT
13441458 GTT
1 GTT
13441461 CTATATAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.48
Consensus pattern (49 bp):
GTTATAATTCTTTTTGGAAAGAATATAACAATTTTAATACTTTCCAGAT
Found at i:13445277 original size:49 final size:49
Alignment explanation
Indices: 13445192--13445292 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 49
13445182 CATTGAAACA
* *
13445192 GTTATAATTCTTTTTAGAAAGAATATAACGTATTTAATATTTTCCATAT
1 GTTACAATTCTTTTTAGAAAGAATATAACGTATTTAATACTTTCCATAT
* * *
13445241 GTTACAATTCTTTTTGGAAAGAATATAATG-ATTTTAATGCTTTCCATAT
1 GTTACAATTCTTTTTAGAAAGAATATAACGTA-TTTAATACTTTCCATAT
13445290 GTT
1 GTT
13445293 CTCTATAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 1 0.02
49 45 0.98
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (49 bp):
GTTACAATTCTTTTTAGAAAGAATATAACGTATTTAATACTTTCCATAT
Found at i:13453444 original size:15 final size:15
Alignment explanation
Indices: 13453426--13453553 Score: 121
Period size: 15 Copynumber: 8.5 Consensus size: 15
13453416 CAACAGTTCG
13453426 CATATAAACAACTCA
1 CATATAAACAACTCA
* ** *
13453441 CATATAATCAGGTCG
1 CATATAAACAACTCA
* ** *
13453456 CATATAAATAGTTCG
1 CATATAAACAACTCA
13453471 CATATAAACAACTCA
1 CATATAAACAACTCA
* * ** *
13453486 CGTATAAATAGTTCG
1 CATATAAACAACTCA
*
13453501 CATATAAACAACTCG
1 CATATAAACAACTCA
*
13453516 CATATAAACAGCTCA
1 CATATAAACAACTCA
13453531 CATATAAACAACTCA
1 CATATAAACAACTCA
13453546 CATATAAA
1 CATATAAA
13453554 TTGTTCAATG
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 90 1.00
ACGTcount: A:0.46, C:0.22, G:0.08, T:0.24
Consensus pattern (15 bp):
CATATAAACAACTCA
Found at i:13453475 original size:30 final size:30
Alignment explanation
Indices: 13453400--13453553 Score: 148
Period size: 30 Copynumber: 5.2 Consensus size: 30
13453390 CAGCTCACAC
* * **
13453400 ATAAGCAGTTCGCATA-CAACAGTTCGCAT
1 ATAAACAGTTCGCATATAAACAACTCGCAT
** * * **
13453429 ATAAACAACTCACATATAATCAGGTCGCAT
1 ATAAACAGTTCGCATATAAACAACTCGCAT
* * *
13453459 ATAAATAGTTCGCATATAAACAACTCACGT
1 ATAAACAGTTCGCATATAAACAACTCGCAT
*
13453489 ATAAATAGTTCGCATATAAACAACTCGCAT
1 ATAAACAGTTCGCATATAAACAACTCGCAT
* * *
13453519 ATAAACAGCTCACATATAAACAACTCACAT
1 ATAAACAGTTCGCATATAAACAACTCGCAT
13453549 ATAAA
1 ATAAA
13453554 TTGTTCAATG
Statistics
Matches: 102, Mismatches: 22, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
29 12 0.12
30 90 0.88
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (30 bp):
ATAAACAGTTCGCATATAAACAACTCGCAT
Found at i:13453479 original size:45 final size:45
Alignment explanation
Indices: 13453387--13453537 Score: 189
Period size: 45 Copynumber: 3.4 Consensus size: 45
13453377 TTCACATACC
* * * *
13453387 AAACAGCTCACACATAAGCAGTTCGCATA-CAACAGTTCGCATAT
1 AAACAACTCACATATAATCAGTTCGCATATAAACAGTTCGCATAT
* *
13453431 AAACAACTCACATATAATCAGGTCGCATATAAATAGTTCGCATAT
1 AAACAACTCACATATAATCAGTTCGCATATAAACAGTTCGCATAT
* **
13453476 AAACAACTCACGTATAAAT-AGTTCGCATATAAACAACTCGCATAT
1 AAACAACTCACATAT-AATCAGTTCGCATATAAACAGTTCGCATAT
*
13453521 AAACAGCTCACATATAA
1 AAACAACTCACATATAA
13453538 ACAACTCACA
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
44 27 0.29
45 62 0.67
46 3 0.03
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (45 bp):
AAACAACTCACATATAATCAGTTCGCATATAAACAGTTCGCATAT
Found at i:13454171 original size:20 final size:20
Alignment explanation
Indices: 13454135--13454195 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
13454125 TAAGAGCTCA
* *
13454135 CACAACATGCGAAAGTGTTTG
1 CACAACAT-CTAAAGTGTTCG
13454156 CACAACATCTAAAGTGTTCG
1 CACAACATCTAAAGTGTTCG
* *
13454176 CATAACATATAATAGTGTTC
1 CACAACATCTAA-AGTGTTC
13454196 ACATATGCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (20 bp):
CACAACATCTAAAGTGTTCG
Found at i:13461988 original size:56 final size:56
Alignment explanation
Indices: 13461902--13462062 Score: 223
Period size: 56 Copynumber: 2.9 Consensus size: 56
13461892 ATGGCAATCA
*
13461902 AAGACCATGTAGTGTAAGACCTAGTCATGGTGGCTATGGCATCATATGGGAAAATG
1 AAGACCATATAGTGTAAGACCTAGTCATGGTGGCTATGGCATCATATGGGAAAATG
* * * *
13461958 AAGACCATATAGTGTAAGGCCTAGTCATGGTAGCTATGTCATCATATGGGGAAATG
1 AAGACCATATAGTGTAAGACCTAGTCATGGTGGCTATGGCATCATATGGGAAAATG
* * * * * *
13462014 AAGACCATACAGTGTAAAAACTAATCATGATGGTTATGGCATCATATGG
1 AAGACCATATAGTGTAAGACCTAGTCATGGTGGCTATGGCATCATATGG
13462063 AAGAAGATGA
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 91 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (56 bp):
AAGACCATATAGTGTAAGACCTAGTCATGGTGGCTATGGCATCATATGGGAAAATG
Found at i:13462315 original size:87 final size:87
Alignment explanation
Indices: 13462206--13462371 Score: 237
Period size: 87 Copynumber: 1.9 Consensus size: 87
13462196 AAATGGAGGC
* * * * * *
13462206 TTTGTGGTTGATTTTGTTAAAGTGAA-TACTTTGTGGTTGATTTTGTTAACGTGAAGCTTTTGTG
1 TTTGTGGCTGATTTTGTTAAAGTGAAGT-CTTTGTGGCTGATTCTGTTAAAGTGAAACCTTTGTG
13462270 GTT-AGTTCTATTAAAGTCAAGTT
65 GTTGA-TTCTATTAAAGTCAAGTT
*
13462293 TTTGTGGCTGATTTTGTTAAAGTGAAGTCTTTGTGGCTGGTTCTGTTAAAGTGAAACCTTTGTGG
1 TTTGTGGCTGATTTTGTTAAAGTGAAGTCTTTGTGGCTGATTCTGTTAAAGTGAAACCTTTGTGG
13462358 TTGATTCTATTAAA
66 TTGATTCTATTAAA
13462372 ATGAGCCTCT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 68 0.97
88 2 0.03
ACGTcount: A:0.22, C:0.07, G:0.25, T:0.46
Consensus pattern (87 bp):
TTTGTGGCTGATTTTGTTAAAGTGAAGTCTTTGTGGCTGATTCTGTTAAAGTGAAACCTTTGTGG
TTGATTCTATTAAAGTCAAGTT
Found at i:13462365 original size:29 final size:29
Alignment explanation
Indices: 13462167--13462379 Score: 180
Period size: 29 Copynumber: 7.4 Consensus size: 29
13462157 ATTTGCCAAA
* * * *
13462167 AAAGTGAAACTTTTATGGCTGATTCTGTT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
* * *
13462196 AAA-TGGAGGCTTTGTGGTTGATTTTGTT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
** *
13462224 AAAGTGAATACTTTGTGGTTGATTTTGTT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
* * *
13462253 AACGTGAAGCTTTTGTGGTT-AGTTCTATT
1 AAAGTGAAGCCTTTGTGGTTGA-TTCTGTT
* ** * *
13462282 AAAGTCAAGTTTTTGTGGCTGATTTTGTT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
* * *
13462311 AAAGTGAAGTCTTTGTGGCTGGTTCTGTT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
* *
13462340 AAAGTGAAACCTTTGTGGTTGATTCTATT
1 AAAGTGAAGCCTTTGTGGTTGATTCTGTT
*
13462369 AAAATG-AGCCT
1 AAAGTGAAGCCT
13462380 CTGTAATCCC
Statistics
Matches: 148, Mismatches: 33, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
28 26 0.18
29 121 0.82
30 1 0.01
ACGTcount: A:0.23, C:0.08, G:0.25, T:0.43
Consensus pattern (29 bp):
AAAGTGAAGCCTTTGTGGTTGATTCTGTT
Found at i:13466839 original size:13 final size:13
Alignment explanation
Indices: 13466823--13466847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13466813 AACAGCCAAA
13466823 GTCAATGGTCAAG
1 GTCAATGGTCAAG
13466836 GTCAATGGTCAA
1 GTCAATGGTCAA
13466848 CGACCAAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (13 bp):
GTCAATGGTCAAG
Found at i:13466864 original size:26 final size:25
Alignment explanation
Indices: 13466830--13466885 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
13466820 AAAGTCAATG
*
13466830 GTCAAGGTCAATGGTCAACGACCAA
1 GTCAAGGTCAACGGTCAACGACCAA
13466855 GTCAATGGTCAACGGTCAACGACCAA
1 GTCAA-GGTCAACGGTCAACGACCAA
13466881 GTCAA
1 GTCAA
13466886 CGGGTCGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (25 bp):
GTCAAGGTCAACGGTCAACGACCAA
Found at i:13472788 original size:23 final size:22
Alignment explanation
Indices: 13472757--13472800 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
13472747 AAAGAAATAA
*
13472757 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
13472779 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
13472801 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:13472932 original size:43 final size:43
Alignment explanation
Indices: 13472871--13472955 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
13472861 CATGGCCCAC
13472871 TTTATGTCTTAAAAATATAATATGTTCAAATAAATATAAAATT
1 TTTATGTCTTAAAAATATAATATGTTCAAATAAATATAAAATT
13472914 TTTATGTCTTAAAAATATAATATGTTCAAATAAATATAAAAT
1 TTTATGTCTTAAAAATATAATATGTTCAAATAAATATAAAAT
13472956 AAATCATTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (43 bp):
TTTATGTCTTAAAAATATAATATGTTCAAATAAATATAAAATT
Found at i:13472956 original size:21 final size:21
Alignment explanation
Indices: 13472880--13472956 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 21
13472870 CTTTATGTCT
*
13472880 TAAAAATATAATATGTTCAAA
1 TAAAAATAAAATATGTTCAAA
* * * ****
13472901 TAAATATAAAATTTTTATGTCT
1 TAAAAATAAAATATGT-TCAAA
*
13472923 TAAAAATATAATATGTTCAAA
1 TAAAAATAAAATATGTTCAAA
*
13472944 TAAATATAAAATA
1 TAAAAATAAAATA
13472957 AATCATTTTA
Statistics
Matches: 37, Mismatches: 18, Indels: 2
0.65 0.32 0.04
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAAAATAAAATATGTTCAAA
Found at i:13473561 original size:38 final size:38
Alignment explanation
Indices: 13473512--13473596 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
13473502 AGTTTTGGTG
* * *
13473512 AAATCTGGAAGTGCTCATGCGGGGACAGTTGTGGGCGC
1 AAATTTGGAAGTGCTCATGCGGCGACAGTTGTGGGCGA
*
13473550 AAATTTGGAAGTGCTCATGCGGCGACAGTTTTGGGCGA
1 AAATTTGGAAGTGCTCATGCGGCGACAGTTGTGGGCGA
13473588 AAATTTGGA
1 AAATTTGGA
13473597 TGTTATTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (38 bp):
AAATTTGGAAGTGCTCATGCGGCGACAGTTGTGGGCGA
Found at i:13473613 original size:38 final size:38
Alignment explanation
Indices: 13473493--13473614 Score: 104
Period size: 38 Copynumber: 3.3 Consensus size: 38
13473483 AAAATATTCC
* * * *
13473493 TGCAGCGACAGTT-TTGGTG-AAATCTGGAAGTGCTCA
1 TGCAGCGACAGTTGTGGGCGAAAATTTGGAAGTGATCA
* * * *
13473529 TGCGGGGACAGTTGTGGGCGCAAATTTGGAAGTGCTCA
1 TGCAGCGACAGTTGTGGGCGAAAATTTGGAAGTGATCA
* * * * **
13473567 TGCGGCGACAGTTTTGGGCGAAAATTTGGATGTTATTT
1 TGCAGCGACAGTTGTGGGCGAAAATTTGGAAGTGATCA
13473605 TGCAGCGACA
1 TGCAGCGACA
13473615 ACTCTATATA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
36 11 0.16
37 4 0.06
38 55 0.79
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.28
Consensus pattern (38 bp):
TGCAGCGACAGTTGTGGGCGAAAATTTGGAAGTGATCA
Found at i:13490462 original size:23 final size:23
Alignment explanation
Indices: 13490430--13490511 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
13490420 AACTCGACCC
*
13490430 GTTGACTTTGATCAAACCGAACT
1 GTTGACTTTGACCAAACCGAACT
* *
13490453 GTTGATTTTGACCAAACCGAACC
1 GTTGACTTTGACCAAACCGAACT
* ** * *
13490476 GTTAACTTTGACTGAATCGAACC
1 GTTGACTTTGACCAAACCGAACT
*
13490499 ATTGACTTTGACC
1 GTTGACTTTGACC
13490512 GACCATTGAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (23 bp):
GTTGACTTTGACCAAACCGAACT
Found at i:13498352 original size:52 final size:52
Alignment explanation
Indices: 13498245--13498468 Score: 344
Period size: 52 Copynumber: 4.3 Consensus size: 52
13498235 TAAATGCAAA
*
13498245 AGGTCCGATGACTTTGTGTCATCATGAGTTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCATGAG-TATATGAATCCTTTACGGATTATG
* *
13498298 AGGTCCGATGAGTATGTGTCATCATGAGTATATGAATACTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATG
* * *
13498350 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTTTACGGATTACG
1 AGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATG
* *
13498402 AGGTCCGATGAC--TGTGTCATCGTGAGTATATGAATCCTTTATGGATTATG
1 AGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATG
*
13498452 AGGTTCGATGACTATGT
1 AGGTCCGATGACTATGT
13498469 ATCAATGTAC
Statistics
Matches: 157, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
50 46 0.29
52 85 0.54
53 26 0.17
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTATG
Found at i:13498449 original size:102 final size:104
Alignment explanation
Indices: 13498245--13498468 Score: 344
Period size: 102 Copynumber: 2.2 Consensus size: 104
13498235 TAAATGCAAA
* *
13498245 AGGTCCGATGACTTTGTGTCATCATGAGTTATATGAATCCTTTACGGATTATGAGGTCCGATGAG
1 AGGTCCGATGACTATGTGTCATCATGAGTTATATGAATCCTTTACGGATTACGAGGTCCGATGAG
13498310 TATGTGTCATCATGAGTATATGAATACTTTACGGATTATG
66 -ATGTGTCATCATGAGTATATGAATACTTTACGGATTATG
* *
13498350 AGGTCCGATGACTATGTGTCATCGTGAG-TATATGAATCTTTTACGGATTACGAGGTCCGATGA-
1 AGGTCCGATGACTATGTGTCATCATGAGTTATATGAATCCTTTACGGATTACGAGGTCCGATGAG
* * * *
13498413 CTGTGTCATCGTGAGTATATGAATCCTTTATGGATTATG
66 ATGTGTCATCATGAGTATATGAATACTTTACGGATTATG
*
13498452 AGGTTCGATGACTATGT
1 AGGTCCGATGACTATGT
13498469 ATCAATGTAC
Statistics
Matches: 110, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
102 51 0.46
104 33 0.30
105 26 0.24
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (104 bp):
AGGTCCGATGACTATGTGTCATCATGAGTTATATGAATCCTTTACGGATTACGAGGTCCGATGAG
ATGTGTCATCATGAGTATATGAATACTTTACGGATTATG
Found at i:13501266 original size:23 final size:22
Alignment explanation
Indices: 13501240--13501302 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 22
13501230 TGACCGAGCT
*
13501240 GAACTATTGATTTTGATAGAACC
1 GAAC-ATTGACTTTGATAGAACC
* **
13501263 GAACAGTTGACTTTGATCGAATT
1 GAACA-TTGACTTTGATAGAACC
13501286 GAACCATTGACTTTGAT
1 GAA-CATTGACTTTGAT
13501303 CGATCGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 31 0.91
24 2 0.06
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (22 bp):
GAACATTGACTTTGATAGAACC
Found at i:13506449 original size:32 final size:32
Alignment explanation
Indices: 13506408--13506470 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
13506398 AATAAATAAT
*
13506408 TTTAGTCAAAATAAAATTAAGAAAATAACAAA
1 TTTAGTCAAAACAAAATTAAGAAAATAACAAA
*
13506440 TTTAGTCAAAACAAAATTAATAAAATAACAA
1 TTTAGTCAAAACAAAATTAAGAAAATAACAA
13506471 CTTTGAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.25
Consensus pattern (32 bp):
TTTAGTCAAAACAAAATTAAGAAAATAACAAA
Found at i:13509943 original size:12 final size:12
Alignment explanation
Indices: 13509921--13509965 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
13509911 AAAATTATTT
13509921 CTTTCCTTTTTCC
1 CTTT-CTTTTTCC
* *
13509934 CTCTCTTTTTTC
1 CTTTCTTTTTCC
13509946 CTTTCTTTTTCC
1 CTTTCTTTTTCC
13509958 CTTTCTTT
1 CTTTCTTT
13509966 GCCTGATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (12 bp):
CTTTCTTTTTCC
Found at i:13517507 original size:51 final size:51
Alignment explanation
Indices: 13517449--13517697 Score: 347
Period size: 51 Copynumber: 4.9 Consensus size: 51
13517439 GTATTAAAGT
13517449 TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
1 TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
* * *
13517500 TCCTTTACGGATTAAAGTTCAGATGACTAAGTGTCATCGTGAGTAAATGAA
1 TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
* * * **
13517551 TCCTTTACGGATTTAAGGTTCGATGACTAAGTGTCATCATGAGTAAACGAA
1 TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
*
13517602 TCCTTTACGGATTAAAGGTCTGATGACTAAGTGTCATCGTGAGTAAATAAA
1 TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
* * * * * *
13517653 TCCATGAAGAATTAAAGGTTCGATGA-TAATATGTCATCGTGAGTA
1 TCCTTTACGGATTAAAGGTCCGATGACTAA-GTGTCATCGTGAGTA
13517698 TTAAATGAAA
Statistics
Matches: 175, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
50 3 0.02
51 172 0.98
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (51 bp):
TCCTTTACGGATTAAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAA
Found at i:13521537 original size:16 final size:16
Alignment explanation
Indices: 13521516--13521546 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13521506 GTCTCGTGAA
13521516 AAATTTCTCTATCGTC
1 AAATTTCTCTATCGTC
*
13521532 AAATTTCTTTATCGT
1 AAATTTCTCTATCGT
13521547 AGCCTTACCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (16 bp):
AAATTTCTCTATCGTC
Found at i:13524836 original size:51 final size:51
Alignment explanation
Indices: 13524750--13525036 Score: 423
Period size: 51 Copynumber: 5.6 Consensus size: 51
13524740 GCTATAAACG
*
13524750 AAAGGTCCGGTGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * * *
13524801 AAAGGTCTGATGACTAAATATCATCATGAGCAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
13524852 AAAGGTCCGATGACTAAGTGTCATCGTGTGTAAATGAATCCTTTATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
13524903 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
13524954 AAAGGTCCGATGACTAAGTGTCATAGTGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * *
13525005 AAAGATCCGATGA-TAATATGTCATTGTGAGTA
1 AAAGGTCCGATGACTAA-GTGTCATCGTGAGTA
13525037 TTAAATGAAA
Statistics
Matches: 213, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 3 0.01
51 210 0.99
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:13530803 original size:17 final size:19
Alignment explanation
Indices: 13530781--13530827 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
13530771 ACATAGAAAT
13530781 TTTTTATTCTTT-TTTT-A
1 TTTTTATTCTTTCTTTTAA
13530798 TTTTTATTCTTTTCTTTTAA
1 TTTTTATTC-TTTCTTTTAA
13530818 TTTTTATTCT
1 TTTTTATTCT
13530828 CAAAGTGTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.33
18 3 0.11
19 5 0.19
20 10 0.37
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTATTCTTTCTTTTAA
Found at i:13532631 original size:24 final size:25
Alignment explanation
Indices: 13532604--13532651 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
13532594 ATTCAATTTA
13532604 TATTACAGTTGCACTGAC-ATTTTG
1 TATTACAGTTGCACTGACAATTTTG
*
13532628 TATTACATTTGCACTGACAATTTT
1 TATTACAGTTGCACTGACAATTTT
13532652 TACTCTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (25 bp):
TATTACAGTTGCACTGACAATTTTG
Found at i:13540424 original size:18 final size:19
Alignment explanation
Indices: 13540386--13540442 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
13540376 TATTGAGGCA
*
13540386 AAAAAGAAGAAAGAAAAGAAG
1 AAAAAGAAG-AAG-AAGGAAG
13540407 AAAAAGAAG-AGAAGGAAG
1 AAAAAGAAGAAGAAGGAAG
*
13540425 AAAAAGAGGAAGAAGGAA
1 AAAAAGAAGAAGAAGGAA
13540443 TTACCCCGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 14 0.42
19 10 0.30
21 9 0.27
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAAGAAGAAGAAGGAAG
Found at i:13540858 original size:17 final size:16
Alignment explanation
Indices: 13540832--13540875 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
13540822 CATGCATTTT
*
13540832 ATTTTTTTGTGATTGC
1 ATTTTTTTGTCATTGC
*
13540848 ATTTTTATTGTCCTTGC
1 ATTTTT-TTGTCATTGC
13540865 ATTTTATTTGT
1 ATTTT-TTTGT
13540876 TTTCATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 17 0.71
18 1 0.04
ACGTcount: A:0.14, C:0.09, G:0.14, T:0.64
Consensus pattern (16 bp):
ATTTTTTTGTCATTGC
Found at i:13542971 original size:24 final size:25
Alignment explanation
Indices: 13542944--13542991 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
13542934 ATTCAATTTA
*
13542944 TATTACAGTTGCACTGAC-ATTTTG
1 TATTACAGTTGAACTGACAATTTTG
*
13542968 TATTACATTTGAACTGACAATTTT
1 TATTACAGTTGAACTGACAATTTT
13542992 TACTCTTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (25 bp):
TATTACAGTTGAACTGACAATTTTG
Found at i:13553379 original size:20 final size:21
Alignment explanation
Indices: 13553354--13553435 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 21
13553344 TGATGATTTT
13553354 AATAATTTTAT-ATTTTAAAA
1 AATAATTTTATAATTTTAAAA
13553374 AATAATTTTAAAATAATTTT----
1 AATAATTTT---ATAATTTTAAAA
13553394 AATAATTTTAT-ATTTTAAAA
1 AATAATTTTATAATTTTAAAA
*
13553414 AATAAATTTAATAATTTTAAAA
1 AAT-AATTTTATAATTTTAAAA
13553436 TCATTTGCTG
Statistics
Matches: 51, Mismatches: 1, Indels: 18
0.73 0.01 0.26
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
20 21 0.41
21 7 0.14
22 9 0.18
23 2 0.04
24 5 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAATTTTATAATTTTAAAA
Found at i:13553388 original size:11 final size:11
Alignment explanation
Indices: 13553372--13553403 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13553362 TATATTTTAA
13553372 AAAATAATTTT
1 AAAATAATTTT
13553383 AAAATAATTTT
1 AAAATAATTTT
13553394 --AATAATTTT
1 AAAATAATTTT
13553403 A
1 A
13553404 TATTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:13553394 original size:40 final size:38
Alignment explanation
Indices: 13553349--13553433 Score: 143
Period size: 40 Copynumber: 2.2 Consensus size: 38
13553339 GATAATGATG
*
13553349 ATTTTAATAATTTTATATTTTAAAAAATAATTTTAAAATA
1 ATTTTAATAATTTTATATTTTAAAAAATAAATTT--AATA
13553389 ATTTTAATAATTTTATATTTTAAAAAATAAATTTAATA
1 ATTTTAATAATTTTATATTTTAAAAAATAAATTTAATA
13553427 ATTTTAA
1 ATTTTAA
13553434 AATCATTTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
38 11 0.25
40 33 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (38 bp):
ATTTTAATAATTTTATATTTTAAAAAATAAATTTAATA
Found at i:13553656 original size:28 final size:29
Alignment explanation
Indices: 13553589--13553671 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 29
13553579 CAATTTGAAG
13553589 GTTATGTATGAAAGTGAGCC-AAAAAAAA
1 GTTATGTATGAAAGTGAGCCAAAAAAAAA
* * **
13553617 --TAAGGACCAAAGTGA-CCAAAAAAAAA
1 GTTATGTATGAAAGTGAGCCAAAAAAAAA
13553643 GTTATGTATGAAAGTGAGCCAAAAAAAAA
1 GTTATGTATGAAAGTGAGCCAAAAAAAAA
13553672 TTTAAGGACC
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
25 2 0.05
26 19 0.44
28 11 0.26
29 11 0.26
ACGTcount: A:0.54, C:0.10, G:0.19, T:0.17
Consensus pattern (29 bp):
GTTATGTATGAAAGTGAGCCAAAAAAAAA
Found at i:13553692 original size:28 final size:28
Alignment explanation
Indices: 13553599--13553693 Score: 108
Period size: 29 Copynumber: 3.5 Consensus size: 28
13553589 GTTATGTATG
13553599 AAAGTGAGCC-AAAAAAAA-TAAGGACC
1 AAAGTGAGCCAAAAAAAAATTAAGGACC
* * **
13553625 AAAGTGA-CCAAAAAAAAAGTTATGTATG
1 AAAGTGAGCCAAAAAAAAA-TTAAGGACC
13553653 AAAGTGAGCCAAAAAAAAATTTAAGGACC
1 AAAGTGAGCCAAAAAAAAA-TTAAGGACC
13553682 AAAGTGA-CCAAA
1 AAAGTGAGCCAAA
13553694 CACCCAAACG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.04
26 15 0.27
28 16 0.29
29 23 0.41
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.14
Consensus pattern (28 bp):
AAAGTGAGCCAAAAAAAAATTAAGGACC
Found at i:13553858 original size:20 final size:20
Alignment explanation
Indices: 13553833--13553873 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
13553823 CGTGATTAAT
13553833 TGGTACGAATGCGGAAAGAA
1 TGGTACGAATGCGGAAAGAA
13553853 TGGTACGAATGCGGAAAGAA
1 TGGTACGAATGCGGAAAGAA
13553873 T
1 T
13553874 TGTTGGTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.34, T:0.17
Consensus pattern (20 bp):
TGGTACGAATGCGGAAAGAA
Found at i:13559652 original size:26 final size:24
Alignment explanation
Indices: 13559623--13559683 Score: 61
Period size: 26 Copynumber: 2.5 Consensus size: 24
13559613 TGAATTATAT
* *
13559623 ATTATTTTATTAAATTATATTTAATA
1 ATTATTTTATTAAAATATAATT-A-A
* *
13559649 ATTATTATGTTAAAATATAATTAA
1 ATTATTTTATTAAAATATAATTAA
13559673 ATTA-TTTATTA
1 ATTATTTTATTA
13559684 TTTTTGTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 1 0.03
26 18 0.62
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTATTTTATTAAAATATAATTAA
Found at i:13559662 original size:57 final size:58
Alignment explanation
Indices: 13559567--13559727 Score: 202
Period size: 58 Copynumber: 2.8 Consensus size: 58
13559557 ATATATTGTG
* * *
13559567 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAATATTATTGAATTATATATT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAATTAAATTATATATT
* * *
13559626 A-TTTTATTAAATTATATTTAATAATTATTATGTTAAAATATAATTAAATTATTTATT
1 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTATATATT
* *
13559683 ATTTTTGTTAAATTATATTTAATAATAATCT-TATTAAAATTTAAT
1 ATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATATAAT
13559728 AATAATAATC
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
57 37 0.42
58 46 0.52
59 6 0.07
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTATATATT
Found at i:13570963 original size:56 final size:56
Alignment explanation
Indices: 13570878--13570988 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
13570868 TTCAAAAGCT
13570878 AAAAACAAATAAACTAAAACTTGAAAATTAAAGACTAAGAAATTGTGTGTAAACCA
1 AAAAACAAATAAACTAAAACTTGAAAATTAAAGACTAAGAAATTGTGTGTAAACCA
* *
13570934 AAAAACAAATAAACTAAAACTTGAAAATTAAAGACTAAGTAGTTGTGTGTAAACC
1 AAAAACAAATAAACTAAAACTTGAAAATTAAAGACTAAGAAATTGTGTGTAAACC
13570989 CTAGTGCTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.55, C:0.11, G:0.12, T:0.23
Consensus pattern (56 bp):
AAAAACAAATAAACTAAAACTTGAAAATTAAAGACTAAGAAATTGTGTGTAAACCA
Found at i:13577544 original size:17 final size:17
Alignment explanation
Indices: 13577522--13577556 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13577512 TATGTATTCT
13577522 TTAAAATATATGAATAC
1 TTAAAATATATGAATAC
*
13577539 TTAAAATATATGGATAC
1 TTAAAATATATGAATAC
13577556 T
1 T
13577557 AACACACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.37
Consensus pattern (17 bp):
TTAAAATATATGAATAC
Found at i:13579211 original size:15 final size:15
Alignment explanation
Indices: 13579174--13579211 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
13579164 GGTTTATTTA
13579174 TTTTTC-TATTTAAT
1 TTTTTCTTATTTAAT
**
13579188 TTTAACTTATTTAAT
1 TTTTTCTTATTTAAT
13579203 TTTTTCTTA
1 TTTTTCTTA
13579212 ATATTACAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCTTATTTAAT
Found at i:13583024 original size:38 final size:38
Alignment explanation
Indices: 13582966--13583046 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
13582956 AGATAAAAGC
* * *
13582966 GAAAGTATCGATGACTGGTGGAAAATACCAAACAGAGA
1 GAAAGTATAGAGGACCGGTGGAAAATACCAAACAGAGA
* *
13583004 GAAAGTATAGAGGACCGGTGGGAAATACCAAACAGAGG
1 GAAAGTATAGAGGACCGGTGGAAAATACCAAACAGAGA
13583042 GAAAG
1 GAAAG
13583047 CAAACTTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.12, G:0.31, T:0.12
Consensus pattern (38 bp):
GAAAGTATAGAGGACCGGTGGAAAATACCAAACAGAGA
Found at i:13584938 original size:41 final size:41
Alignment explanation
Indices: 13584893--13585052 Score: 196
Period size: 41 Copynumber: 3.9 Consensus size: 41
13584883 TTAGTGGTGT
* *
13584893 TTTTCCCATAAACGTCGCTAATGCTCTTACCTTTTGCGGTA
1 TTTTCTCATAAACGTCGCTAATGCTCTTACCTTTTGCGGCA
* * * *
13584934 TTTTCTCATAAATGTCGTTAATGCTCTTACCTTTTGCTGCG
1 TTTTCTCATAAACGTCGCTAATGCTCTTACCTTTTGCGGCA
** *
13584975 TTTTCTCATAAACCCCGCTAATGCTCTTACCTTTTGCGACA
1 TTTTCTCATAAACGTCGCTAATGCTCTTACCTTTTGCGGCA
* * *
13585016 TTTTTTTCATAAACGCCGCTATTGCT-TTACCTTTTGC
1 -TTTTCTCATAAACGTCGCTAATGCTCTTACCTTTTGC
13585053 AGATTTTATG
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 80 0.78
42 22 0.22
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.42
Consensus pattern (41 bp):
TTTTCTCATAAACGTCGCTAATGCTCTTACCTTTTGCGGCA
Found at i:13585075 original size:82 final size:82
Alignment explanation
Indices: 13584899--13585093 Score: 191
Period size: 82 Copynumber: 2.4 Consensus size: 82
13584889 GTGTTTTTCC
** ** * * *
13584899 CATAAACGTCGCTAATGCTCTTACCTTTTGCGGTATTTTCTCATAAATGTCGTTAATGCTCTTAC
1 CATAAACACCGCTAATGCTCTTACCTTTTGCGACATTTTCTCATAAACGCCGCTAATGCTCTTAC
* * *
13584964 CTTTTGCTGCGTTTTCT
66 CTTTTGCAGCATTTTAT
* * *
13584981 CATAAACCCCGCTAATGCTCTTACCTTTTGCGACATTTTTTTCATAAACGCCGCTATTGCT-TTA
1 CATAAACACCGCTAATGCTCTTACCTTTTGCGACA-TTTTCTCATAAACGCCGCTAATGCTCTTA
13585045 CCTTTTGCAG-ATTTTAT
65 CCTTTTGCAGCATTTTAT
* * *
13585062 GGGA-AAACACCGCTATTGCT-TTATCTTTTGCG
1 --CATAAACACCGCTAATGCTCTTACCTTTTGCG
13585094 GCGTTTATGA
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
81 16 0.17
82 57 0.61
83 21 0.22
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (82 bp):
CATAAACACCGCTAATGCTCTTACCTTTTGCGACATTTTCTCATAAACGCCGCTAATGCTCTTAC
CTTTTGCAGCATTTTAT
Found at i:13585132 original size:40 final size:40
Alignment explanation
Indices: 13585026--13585135 Score: 141
Period size: 40 Copynumber: 2.8 Consensus size: 40
13585016 TTTTTTTCAT
* ** *
13585026 AAACGCCGCTATTGCTTTACCTTTTGCAGATTTTATGGGA
1 AAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGA
* *
13585066 AAACACCGCTATTGCTTTATCTTTTGCGGCGTTTATGAGA
1 AAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGA
*
13585106 AAACGCCGCTATTGTTTTA-CTATTTGCGGC
1 AAACGCCGCTATTGCTTTACCT-TTTGCGGC
13585136 ATTTTCGGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.03
40 59 0.97
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (40 bp):
AAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGA
Found at i:13585530 original size:11 final size:11
Alignment explanation
Indices: 13585514--13585544 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
13585504 CCATCTTTGA
13585514 GCCACCCTTGC
1 GCCACCCTTGC
13585525 GCCACCCTTGC
1 GCCACCCTTGC
*
13585536 ACCACCCTT
1 GCCACCCTT
13585545 TTAGTCACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.55, G:0.13, T:0.19
Consensus pattern (11 bp):
GCCACCCTTGC
Found at i:13585640 original size:5 final size:5
Alignment explanation
Indices: 13585602--13585637 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
13585592 ACCATTTTGT
*
13585602 TCTTC T-TTC TCTTC TCTTC TCTTC TCTTC TCATC TC
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TC
13585638 ATCACTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.03, C:0.39, G:0.00, T:0.58
Consensus pattern (5 bp):
TCTTC
Found at i:13604063 original size:16 final size:16
Alignment explanation
Indices: 13604042--13604072 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13604032 ATAATGTCAA
13604042 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
13604058 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
13604073 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:13607657 original size:15 final size:15
Alignment explanation
Indices: 13607637--13607674 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
13607627 GAGGGGATGA
13607637 TGCGAGCATGGACA-T
1 TGCGAGCATGGA-AGT
13607652 TGCGAGCATGGAAGT
1 TGCGAGCATGGAAGT
13607667 TGCGAGCA
1 TGCGAGCA
13607675 CTAATGCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 1 0.05
15 21 0.95
ACGTcount: A:0.26, C:0.18, G:0.37, T:0.18
Consensus pattern (15 bp):
TGCGAGCATGGAAGT
Found at i:13613502 original size:23 final size:23
Alignment explanation
Indices: 13613469--13613608 Score: 105
Period size: 23 Copynumber: 6.3 Consensus size: 23
13613459 GATGGGTAAT
*
13613469 AGAGGGCACACAAAGTGCTAAAC
1 AGAGAGCACACAAAGTGCTAAAC
*
13613492 AGAGAGTACACAAA--G-T--AC
1 AGAGAGCACACAAAGTGCTAAAC
* *
13613510 --TGAGCACACAAAGTGCTAATC
1 AGAGAGCACACAAAGTGCTAAAC
** *
13613531 AGAGAGCACATGAAGTGCTAATC
1 AGAGAGCACACAAAGTGCTAAAC
** *
13613554 AGAGAGCACATGAAGTGCTAATAAT
1 AGAGAGCACACAAAGTGCT-A-AAC
* *
13613579 AGAGAGCACACATAGTGCTAATC
1 AGAGAGCACACAAAGTGCTAAAC
13613602 AGAGAGC
1 AGAGAGC
13613609 GTGCTAGTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
16 10 0.11
18 3 0.03
19 1 0.01
20 1 0.01
21 2 0.02
23 57 0.61
24 2 0.02
25 17 0.18
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (23 bp):
AGAGAGCACACAAAGTGCTAAAC
Found at i:13613595 original size:25 final size:23
Alignment explanation
Indices: 13613511--13613608 Score: 119
Period size: 23 Copynumber: 4.2 Consensus size: 23
13613501 ACAAAGTACT
13613511 GAGCACA-CAAAGTGCTAATCAGA
1 GAGCACATC-AAGTGCTAATCAGA
*
13613534 GAGCACATGAAGTGCTAATCAGA
1 GAGCACATCAAGTGCTAATCAGA
* *
13613557 GAGCACATGAAGTGCTAATAATAGA
1 GAGCACATCAAGTGCTAAT--CAGA
13613582 GAGCACA-CATAGTGCTAATCAGA
1 GAGCACATCA-AGTGCTAATCAGA
13613605 GAGC
1 GAGC
13613609 GTGCTAGTGT
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
23 47 0.70
24 1 0.01
25 19 0.28
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.16
Consensus pattern (23 bp):
GAGCACATCAAGTGCTAATCAGA
Found at i:13617621 original size:27 final size:26
Alignment explanation
Indices: 13617589--13617662 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
13617579 AAAATACAAT
13617589 TTAAATTATAAAATAATTAATTTGTAA
1 TTAAATTATAAAATAATTAATTT-TAA
* *
13617616 TTAAATTACCAACAT-ATTAAATTTTAA
1 TTAAATTA-TAAAATAATT-AATTTTAA
* *
13617643 TT-ATTTATATAATAATTAAT
1 TTAAATTATAAAATAATTAAT
13617663 CATGAATTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
25 6 0.16
26 7 0.18
27 16 0.42
28 9 0.24
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (26 bp):
TTAAATTATAAAATAATTAATTTTAA
Found at i:13629698 original size:195 final size:193
Alignment explanation
Indices: 13629280--13629727 Score: 492
Period size: 195 Copynumber: 2.3 Consensus size: 193
13629270 GAAACCGACG
* * * * *
13629280 CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTTGACAGCTCATGTGAGCAGCATCGTGAGTTG
1 CGATGGCTGAGGTATC-CATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTTA
* * *
13629345 GGAAAAGAGAAAAATATCCAGGAATGGATTATAGGCCTTACGATGGCTGAGATTTATGAATAAGT
65 GGAAAAGAGAAAAAGATCCA-GAATGGATTATAGGCCCTACGATGGCTGAGATCTATGAATAAGT
* * * * * *
13629410 GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTAGGGAACAATTATATGCACAGATATCGTAA
129 GCATACTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGAACAATTATATACACAGACACCGTAA
* * *
13629475 GGATGGCTGAGGTATTGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGTAGCATCGTGACTTA
1 CGATGGCTGAGGTA-TCCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTTA
* ** * ** *
13629540 GG-AAAGAGATATGGATCCTA-AATGGATTATAGGCCCTACGATGGCTGGGA-CTATGCTTTA-T
65 GGAAAAGAGAAAAAGATCC-AGAATGGATTATAGGCCCTACGATGGCTGAGATCTATGAATAAGT
* * *
13629601 GCATACTCTCGACAACTCGTGTGAGCAGTATCGTTAGGGAACAGTTTATAGTACAGACAGGCACC
129 GCATACTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGAACA-ATTATA-TAC--ACAGACACC
*
13629666 GTAC
190 GTAA
* * *
13629670 CGATGGTTGGGGTA-CCATATACGTTGCGAGTCCTCGATAGCTCGTGTGAGCAGCATCG
1 CGATGGCTGAGGTATCCATAT--GTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCG
13629728 AGTACTGGTA
Statistics
Matches: 211, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
191 40 0.19
192 11 0.05
193 35 0.17
194 12 0.06
195 113 0.54
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (193 bp):
CGATGGCTGAGGTATCCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCGTGACTTAG
GAAAAGAGAAAAAGATCCAGAATGGATTATAGGCCCTACGATGGCTGAGATCTATGAATAAGTGC
ATACTCTCGACAACTCGTGTGAGCAGCATCGTTAGGGAACAATTATATACACAGACACCGTAA
Found at i:13647634 original size:18 final size:18
Alignment explanation
Indices: 13647613--13647648 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13647603 ATTATATAAT
13647613 ATTTAAATATATAATTTA
1 ATTTAAATATATAATTTA
*
13647631 ATTTAAATATATATTTTA
1 ATTTAAATATATAATTTA
13647649 TTTTTGGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAATATATAATTTA
Found at i:13647665 original size:103 final size:106
Alignment explanation
Indices: 13647546--13647783 Score: 338
Period size: 110 Copynumber: 2.2 Consensus size: 106
13647536 TAAATTTATT
* *
13647546 TTTTTGGTGGAGTCATTTTAAATGGCATCACCCAATTGATTTTTTG-TT-TTT-TTATTTATTAT
1 TTTTTGGTGGAGTCATTTTAAATGACATCACCCAATTAATTTTTTGTTTATTTATTATTTATTAT
*
13647608 ATAATATTTAAATATATAATTTAATTTAAATATATATTTTA
66 ATAATATGTAAATATATAATTTAATTTAAATATATATTTTA
* *
13647649 TTTTTGGTGGAATCATTTTAAATGACGTCACCCAATTAATTTTTTGTTTATTTATTTATTATTTA
1 TTTTTGGTGGAGTCATTTTAAATGACATCACCCAATTAATTTTTTG----TTTATTTATTATTTA
* * *
13647714 TTATTTAATATGTAAATATATAGTTTAATTTAAATGTATATTTTA
62 TTATATAATATGTAAATATATAATTTAATTTAAATATATATTTTA
*
13647759 TTTTTGGTGGAGTCATTCTAAATGA
1 TTTTTGGTGGAGTCATTTTAAATGA
13647784 AACCACCAAT
Statistics
Matches: 118, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
103 42 0.36
108 2 0.02
109 3 0.03
110 71 0.60
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (106 bp):
TTTTTGGTGGAGTCATTTTAAATGACATCACCCAATTAATTTTTTGTTTATTTATTATTTATTAT
ATAATATGTAAATATATAATTTAATTTAAATATATATTTTA
Found at i:13647840 original size:110 final size:111
Alignment explanation
Indices: 13647583--13647856 Score: 260
Period size: 110 Copynumber: 2.5 Consensus size: 111
13647573 TCACCCAATT
*
13647583 GATTTTTTG-TT-TT-TTTATTTATTATATAATATTTAAATATATAATTTAATTTAAATATATAT
1 GATTTTTTGTTTATTATTTATTT-TTA-AAAAT-TTTAAATATATAATTTAATTTAAATATATAT
* *** *** **
13647645 TTTATTTTTGGTGGAATCATTTTAAATGACGTCACCCAATTAATTTTTT
63 TTTATTTTTGGTGGAATCATTCTAAATGAAACCACCCAATTAACGATGA
* * * * *
13647694 G-TTTATTTATTTATTATTTATTATTT-AATA-TGTAAATATATAGTTTAATTTAAATGTATATT
1 GATTT-TTTGTTTATTATTTATT-TTTAAAAATTTTAAATATATAATTTAATTTAAATATATATT
* **
13647756 TTATTTTTGGTGGAGTCATTCTAAATGAAACCA-CCAATTCCCGATGA
64 TTATTTTTGGTGGAATCATTCTAAATGAAACCACCCAATTAACGATGA
*
13647803 GATTTTTTGTTTATTATTTATTTTTAAAAATTTTAAAT-T-TATTTCTAATTTAAA
1 GATTTTTTGTTTATTATTTATTTTTAAAAATTTTAAATATATAATT-TAATTTAAA
13647857 AATTAAAAAA
Statistics
Matches: 132, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
108 7 0.05
109 37 0.28
110 69 0.52
111 4 0.03
112 4 0.03
113 2 0.02
114 8 0.06
115 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (111 bp):
GATTTTTTGTTTATTATTTATTTTTAAAAATTTTAAATATATAATTTAATTTAAATATATATTTT
ATTTTTGGTGGAATCATTCTAAATGAAACCACCCAATTAACGATGA
Found at i:13649986 original size:30 final size:29
Alignment explanation
Indices: 13649952--13650046 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 29
13649942 TGTGTTTGGA
13649952 GTTGATCCTCCAGGTCGGGCTCTACCATAG
1 GTTGATCCTCC-GGTCGGGCTCTACCATAG
* ***
13649982 GTTGATCCTCCGAGTCGGGTTCCGTCATAG
1 GTTGATCCTCCG-GTCGGGCTCTACCATAG
*
13650012 GTTGATCCTCCGGGTCGGGCT-TCCTCATAG
1 GTTGATCCTCC-GGTCGGGCTCTAC-CATAG
13650042 GTTGA
1 GTTGA
13650047 CTTCCATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
29 1 0.02
30 52 0.96
31 1 0.02
ACGTcount: A:0.14, C:0.27, G:0.29, T:0.29
Consensus pattern (29 bp):
GTTGATCCTCCGGTCGGGCTCTACCATAG
Found at i:13652087 original size:23 final size:23
Alignment explanation
Indices: 13652061--13652104 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13652051 TCAAAATTAG
13652061 AAGGA-AATTAAAATAAAAAATGA
1 AAGGAGAATTAAAA-AAAAAATGA
*
13652084 AAGGAGAATTATAAAAAAAAT
1 AAGGAGAATTAAAAAAAAAAT
13652105 AAATAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (23 bp):
AAGGAGAATTAAAAAAAAAATGA
Found at i:13653445 original size:16 final size:16
Alignment explanation
Indices: 13653404--13653448 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
13653394 TATAAGTTTC
13653404 AAAATATAAATAATAAT
1 AAAAT-TAAATAATAAT
*
13653421 -AAA--ACATAATAAT
1 AAAATTAAATAATAAT
13653434 AAAATTAAATAATAA
1 AAAATTAAATAATAA
13653449 AGAGAAAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
16 11 0.48
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATTAAATAATAAT
Found at i:13653449 original size:13 final size:13
Alignment explanation
Indices: 13653413--13653437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13653403 CAAAATATAA
13653413 ATAATAATAAAAC
1 ATAATAATAAAAC
13653426 ATAATAATAAAA
1 ATAATAATAAAA
13653438 TTAAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAATAAAAC
Found at i:13664395 original size:12 final size:12
Alignment explanation
Indices: 13664378--13664411 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13664368 GTCCATCAAC
13664378 ATCAAGATAAAG
1 ATCAAGATAAAG
*
13664390 ATCAAGATCAAG
1 ATCAAGATAAAG
*
13664402 ATAAAGATAA
1 ATCAAGATAA
13664412 GGTTTGGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (12 bp):
ATCAAGATAAAG
Found at i:13664399 original size:18 final size:18
Alignment explanation
Indices: 13664372--13664409 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
13664362 TTGGATGTCC
13664372 ATCAACATCAAGATAAAG
1 ATCAACATCAAGATAAAG
*
13664390 ATCAAGATCAAGATAAAG
1 ATCAACATCAAGATAAAG
13664408 AT
1 AT
13664410 AAGGTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.18
Consensus pattern (18 bp):
ATCAACATCAAGATAAAG
Found at i:13664776 original size:15 final size:16
Alignment explanation
Indices: 13664756--13664789 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
13664746 TATTTTTATA
*
13664756 TTTTTCTTTTCTTT-T
1 TTTTTCCTTTCTTTCT
13664771 TTTTTCCTTTCTTTCT
1 TTTTTCCTTTCTTTCT
13664787 TTT
1 TTT
13664790 CCATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTCCTTTCTTTCT
Found at i:13664785 original size:24 final size:24
Alignment explanation
Indices: 13664758--13664805 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13664748 TTTTTATATT
*
13664758 TTTCTTTT-CTTTTTTTTTCCTTTC
1 TTTCTTTTCCATTTTTTTT-CTTTC
13664782 TTTCTTTTCCATTTTTTTTCTTTC
1 TTTCTTTTCCATTTTTTTTCTTTC
13664806 CATTCTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTCTTTTCCATTTTTTTTCTTTC
Found at i:13665908 original size:40 final size:41
Alignment explanation
Indices: 13665846--13665960 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 41
13665836 AACCAGTTTG
13665846 TGGACAAGCCACCAGTAATGCAGATAAACTGCTAGA-AATA
1 TGGACAAGCCACCAGTAATGCAGATAAACTGCTAGATAATA
* * * *
13665886 TGGGCAAGCCACCAG-AATTGCAGACAAGCTGCCA-ATAATA
1 TGGACAAGCCACCAGTAA-TGCAGATAAACTGCTAGATAATA
*
13665926 TGGACAAGCCACCAGTAATGCAGATAAACTACTAG
1 TGGACAAGCCACCAGTAATGCAGATAAACTGCTAG
13665961 TATTACAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.05
40 57 0.92
41 2 0.03
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.17
Consensus pattern (41 bp):
TGGACAAGCCACCAGTAATGCAGATAAACTGCTAGATAATA
Found at i:13665944 original size:20 final size:20
Alignment explanation
Indices: 13665882--13665944 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
13665872 AACTGCTAGA
*
13665882 AATATGGGCAAGCCACCAG-
1 AATATGGACAAGCCACCAGT
** *
13665901 AAT-TGCAGACAAGCTGCCAAT
1 AATATG--GACAAGCCACCAGT
13665922 AATATGGACAAGCCACCAGT
1 AATATGGACAAGCCACCAGT
13665942 AAT
1 AAT
13665945 GCAGATAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
18 2 0.06
19 3 0.09
20 23 0.70
21 3 0.09
22 2 0.06
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.16
Consensus pattern (20 bp):
AATATGGACAAGCCACCAGT
Found at i:13672864 original size:23 final size:25
Alignment explanation
Indices: 13672834--13672880 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
13672824 TCCAATTAGG
13672834 AAATTA-TTATTTAG-ATTTAATTC
1 AAATTATTTATTTAGAATTTAATTC
*
13672857 AAATTATTTTTTTAGAATTTAATT
1 AAATTATTTATTTAGAATTTAATT
13672881 TGGATCTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 7 0.33
25 8 0.38
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (25 bp):
AAATTATTTATTTAGAATTTAATTC
Found at i:13673966 original size:18 final size:18
Alignment explanation
Indices: 13673943--13674001 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 18
13673933 AGCCATTTTA
13673943 TTATTATTTATTTTTATT
1 TTATTATTTATTTTTATT
13673961 TTATTATTTGCATTTTTAATT
1 TTATTATTT--ATTTTT-ATT
* *
13673982 TAATT-TTCTATTTTAATT
1 TTATTATT-TATTTTTATT
13674000 TT
1 TT
13674002 TTTCCCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 13 0.38
19 5 0.15
20 8 0.24
21 8 0.24
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (18 bp):
TTATTATTTATTTTTATT
Found at i:13676820 original size:12 final size:11
Alignment explanation
Indices: 13676800--13676830 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
13676790 AAAATTAGTA
13676800 TTTATTTTCAT
1 TTTATTTTCAT
13676811 TTTCATTTTCAT
1 TTT-ATTTTCAT
13676823 TTTATTTT
1 TTTATTTT
13676831 AATTATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTTTCAT
Found at i:13681737 original size:15 final size:16
Alignment explanation
Indices: 13681700--13681737 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
13681690 AATAATTTAT
13681700 ATTGAATTTTAATTTG
1 ATTGAATTTTAATTTG
*
13681716 A-TAAATTTTAA-TTG
1 ATTGAATTTTAATTTG
13681730 ATTGAATT
1 ATTGAATT
13681738 AATGGTTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 4 0.21
15 14 0.74
16 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (16 bp):
ATTGAATTTTAATTTG
Found at i:13682272 original size:17 final size:18
Alignment explanation
Indices: 13682247--13682281 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13682237 CCAATCAATC
*
13682247 CTATTCGCTAGG-TATTT
1 CTATCCGCTAGGTTATTT
13682264 CTATCCGCTAGGTTATTT
1 CTATCCGCTAGGTTATTT
13682282 TTTCCGTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (18 bp):
CTATCCGCTAGGTTATTT
Found at i:13685798 original size:208 final size:208
Alignment explanation
Indices: 13684134--13700007 Score: 13714
Period size: 207 Copynumber: 75.3 Consensus size: 208
13684124 AAAAATGTGT
* * * *
13684134 CAAATAGTTTGTCTTTTTGTAAATTACTATTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
13684199 TGTATCTCTCTTGGTTCTTGGACGAACTTCTCAAACTTTTACGAGCTCCTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * ** *
13684264 CTTAAAGTATTCATGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGAGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13684329 GCATCATTTGGTC
196 GCATCATTTGGTC
* *
13684342 CAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13684406 TATAGTCTCTCCTAGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
66 TGTA-TCTCTCTTGGTTC-TTG--G-A--T--GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * ** *
13684471 CTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGTA-ATTTTTTGAGTATTCCAAGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGC
*
13684535 TCGAGAAATTGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * * *
13684558 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTGGGTGTTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
13684621 TTG-ATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * ** *
13684685 CTTCGGTTCCTTAAAGTATTCAAGACGATTCATTCTTTCGAG-CAATTTTTCGAGTATTCCAGGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
*
13684749 TCGAGAAATTGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * * * *
13684772 TAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTTAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13684835 TTGTATCTATCTCTCTTGGTTGTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTT
65 TTG----TATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * **
13684900 ATAACTTCAGTTTCTTAAAGTATTCAA-TCTGATTCATTCCTTAAAG-CTATTTTTCGAACATTC
118 ATAACTTCGGTTCCTTAAAGTATTCAAGAC-GATCCATTCCTTCGAGAC-ATTTTTCGAACATTC
* * *
13684963 CATACTCGGGAAGTCGCATCATTTGGTC
181 CATGCTCGAGAAATCGCATCATTTGGTC
* * * *
13684991 CAAATTGTTTGTCATTTTGT-AACTACTTTTGGTCTTTAAATTAAGAACTTA-TTA-GCAGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAA
* * * *
13685053 TTGTATCTCTCTTCGTTCTAGGACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATT
65 TTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * ** * * *
13685118 CCTTAAAGTATTCACGACGATCCTTTCCTTCGAGACATTTCCCGAACATTGCATGCTCGGGAAGT
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAAT
13685183 CGCATCATTTGGTC
195 CGCATCATTTGGTC
* *
13685197 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAAACTTATTTATGTGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAA
* * * * * * *
13685262 TTGTATCTCTCTTGGTTCTTGGACGAAATTCTCAAACTTTTACGAGCTCCTTTATAACTTTGATT
65 TTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * ** *
13685327 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTA-ATTTTTCTAGTATTCCAGGCTCGAGAAA
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGCTCGAGAAA
*
13685391 TTGCATCATTTGGTC
194 TCGCATCATTTGGTC
* * * * * *
13685406 CAAATAGGTTGTCA-TTTG-GAACCAGCTTTTGGTGTTTGAATTATAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13685469 TTGTATCTCTCTTGGTTCTTAGACAAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G---GA---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
13685534 CTTCAGTTCCTTAAAGTATTCAATACAATCCATTCCTTCAAG-CTATTTTTCGAACATTTCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
*
13685598 TCGAGAAGTCGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * *
13685621 CAAATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTATGTCATAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
13685686 TGTATCCCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * ** * *
13685751 CTTAAAGTATTCACGATGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13685816 GCATCATTTGGTC
196 GCATCATTTGGTC
* * *
13685829 TAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13685894 AT-AATCTCTCCTAGTTCTTTGACGAACTTTGGAACTTGTCAAACTTTTATGAGTTCTTTTATAA
66 -TGTATCTCTCTTGGTTC-TTG--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* ** *
13685958 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTA-ATTTTTAGAGTATTCCAGGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGC
*
13686022 TCGAGAAATTGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * ** * * * *
13686045 CGAATAGGTTATC-GCTTG-CAACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
13686108 TTATATCTCTCTTGGTTCTTGGTCGAACTTTGGAACTTGTCAAACTTTTTCAAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
13686173 CTTCAGTTCCTTAAAGTATTC-A-ACGATCCATTCCTTCAAG-CTATTTTTCGAATATTCCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
*
13686235 T-G-GAAGTCGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* *
13686256 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * ** *
13686320 TGTATCCCTCTTCGTTCTAGGACAAACTTGTCAAACTTTTACAAGTTC-TTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * * *
13686384 CTTAACGTATTCACGATGATCCTTTCCTTCGAGATA-TTTCCTGAACATTCGATGCTCGA-AAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
*
13686447 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * * *
13686461 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTCATAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
13686526 TGTATCCCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * ** * *
13686591 CTTAAAGTATTCACGATGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13686656 GCATCATTTGGTC
196 GCATCATTTGGTC
*
13686669 CAAATTA-TTTGTCATTTTGTAAAC-ACTCTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
1 CAAA-TAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13686732 TAT-AATCTCTCCTAGTTCTTTGACGAACTTGGAACTTGTCAAACTTTTACGAG-TCTTTTATAA
65 T-TGTATCTCTCTTGGTTC-TTG--G-A--T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
13686795 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTA-A-TTTTCGAGA-ATTCCATG
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGA-ACATTCCATG
*
13686857 CTCGAGAAATTGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* ** * * * **
13686881 CAAATAGGTTGTC-GCTTG-CAACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTAATTGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13686944 TTATATCTCTCTTGGTTCTTGGATGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
13687009 CTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-C-TTTTTCGAATATTCCATGCT
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCT
* *
13687072 CGGGAAGTCGCATCATTTGGTC
187 CGAGAAATCGCATCATTTGGTC
* *
13687094 CAAATAGTTTGTCA-TTTGTAAACTACTTTTGGTCTTGAATTAATTAAAAACTTA-TTA-GCAGA
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTT---TGAATTAAAAACTTATTTACG-TGA
* * * ** *
13687156 GAATTGTATCCCTCTTCGTTCTAGGACAAACTAT-TCAAACTTTTACGAGTTCTTTTATAACTTT
62 GAATTGTATCTCTCTTGGTTCTTGGATGAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * ** * * ** *
13687220 GGTTTCTTAACGTATTCGCGACGATCCTTTCCTTCGAGATATTTCCCGAACATTCCATGCTCAAG
126 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAG
*
13687285 AAATCGTATCATTTGGTC
191 AAATCGCATCATTTGGTC
* * *
13687303 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAAC-TATTTATGTCAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13687367 TGTATC-CTCTTGGTTCTTGGACGGACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * *
13687431 CCTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTTCGAGA-ATTCCAGGCTTGAGAAA
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGA-ACATTCCATGCTCGAGAAA
13687494 TTC-CATCATTTGGTC
194 -TCGCATCATTTGGTC
* * * *
13687509 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGT-GTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13687571 TTGTATCTCTCTTGGTTCTTGGACGAACTTGGAACTTGTGAAACTTTTTCGAGTTC-ATTATAAC
65 TTGTATCTCTCTTGGTTCTT-G--G-A--T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
13687635 TTCAGTTCCTTAACGTATTAAATACGATCCATTCCTTC-A-ATCTTTTTTTCGAACATTTCATGC
123 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGA-C-ATTTTTCGAACATTCCATGC
* * **
13687698 TCGGGAAGTCGCATCATTTGCCC
186 TCGAGAAATCGCATCATTTGGTC
* *
13687721 CAAATAGTTTTGT-ATTTTGTAAACTACTTTT-GTCTTTGAATTAAAAACTTA-TTAGGAGAGAA
1 CAAATAG-TTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
13687783 TTGTATCTCTCTTGATTCTAGGACGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTT
65 TTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* ** * ** *
13687848 CCTTAAAGTATTCACGACGATCTTTTTTCCTTCGAGATATTTCCCGAACATTCCATGCTCGGGAA
130 CCTTAAAGTATTCAAGACGATC--CATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAA
**
13687913 ATCGTTTCATTTGGTC
193 ATCGCATCATTTGGTC
* *
13687929 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
13687994 TGTA--TCTCTTGGTTCTTGGACGAACTTCTCAAACATTTACAAGTTCTTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * **
13688057 CTTAAAGTATTCACGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGAGAAATC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
*
13688122 GTATCATTTGGTC
196 GCATCATTTGGTC
* * *
13688135 TAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTAAGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
13688200 TGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTACGAGCTCCTTTATAAATTTGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * ** * *
13688265 CTTAAAGTATTTAAGGCGATCCTTTCCTTCGAGACATATCCCGAACATTCCATGCTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13688330 GCATCATTTGGTC
196 GCATCATTTGGTC
* * * * * *
13688343 CAAATTGCTTGTCATTTTGTAAACAACTCTTGGTCTTTGAATT-AAAATTTATTTAAGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** *
13688407 AT-AATCTCTCCTATTTCTTTGACGAACCTTGGAACTTGTCAAACTTTTACAAGTTCTTTTATAA
66 -TGTATCTCTCTTGGTTC-TTG--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
13688471 CATCAGTTCCTTAAAGTATTCAAGATGATCCA-TCCTTCGAGTA-ATTTTTCGAGCATTCCAGGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGC
*
13688534 TCGAGAAATTGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * * * * *
13688557 TAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGGATT-AAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13688619 TTGTATCTCTCTTGGTTCTTGGATGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
13688684 CTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTCCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
* *
13688748 TCGGGAAGTCGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * * ** *
13688771 TAAATTGTTTGTCATTTTGTAAACTGCTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAAAGAGT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * ** *
13688835 TGTATCCCTTTTTGTTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
13688900 CTTAAAGTATTCACGATGATCCTTTCCTTCGAGATA-TTTCCTGAACATTCCATGCTCGGGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
*
13688964 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* *
13688978 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAA-TAAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
13689042 TGTATCTCTCTTGGTTCTTGGACGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * ** *
13689107 CTTAAAGTATTCAAGACGATCCATTCCTTGGAG-CAATTTTCCGAGTATTCCAGGCTCGAGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGCTCGAGAAAT
* *
13689171 TGCATCATTTGGTA
195 CGCATCATTTGGTC
* * * *
13689185 CAAATAGGTTGTCA-TTTGT-AACCAGC-TTTGGTGTTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13689247 TTGTATCCCTCTTGGTTCTTGGACGAACTTTGGAACATGTCAAACTTTT-CGAGTTCGAGTTCAT
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTC---TT--T
* ** * * * * * ** *
13689311 TATAACTTC--ATCCTTCTAGCTATTTTTCGA-AC-ATTTCA-TGC-TCGGGA-A-GTCAC-ATC
117 TATAACTTCGGTTCCTTAAAG-TA---TTCAAGACGA-TCCATTCCTTCGAGACATTTTTCGAAC
* * * *
13689367 ATT---TGGTCCA-AATAGTTTG--TCATTTTGT-
177 ATTCCATGCTCGAGAA-A--TCGCATCATTTGGTC
* *** ** *
13689395 -AAACT-GTCTTTTGTC--TTTGAATTAAA-AACTTATTAGG--AGAGAATT-GTAACTT-TTTT
1 CAAA-TAG---TTTGTCATTTTG---TAAACTACTT-TT-GGTCTTTGAATTAAAAACTTATTTA
* * * * ** * * *
13689451 CTTCTAGGATGAGCTTGTCAAACT-TTTATGAGTTCTTTTAT-AAGTTCGGTTC---C-TTAAAG
57 C--GT--GA-GA-ATTGT--ATCTCTCT-TG-GTTCTTGGATGAACTT--G-TCAAACTTTTACG
*** * ** ** ** * *
13689510 TA-TTC-ACGATGA--TCCTTTCCTTCGAGATATTTCCCGAAC-ATTCCA-TGC-TCGGGA-A--
109 -AGTTCTTTTATAACTTCGGTTCCTTAAAG-TA-TTCAAG-ACGA-TCCATTCCTTCGAGACATT
* * * * * *
13689565 -ATCGTATCATT---TGGTCCA-AATAGTTTG--TCATTTTGT-
169 TTTCG-AACATTCCATGCTCGAGAA-A--TCGCATCATTTGGTC
* * * ** * ** ** * * *
13689601 -AACTACTATTGGTC--TTTGAAATAAA-AACTTATTTATGTGAGAATT-GTATCTCTCTTGGTT
1 CAAATAGT-TT-GTCATTTTG---TAAACTACTT-TTGGTCTTTGAATTAAAAACT-TATT--TA
* * * ** ** * * *
13689661 CTTGGACGAACTTCTCAAACT-T-TTACGAGTTCTTTTAT-AAC-T-TCGAGTCCTTAAAGTA-T
57 CGT-GA-GAA-TTGT--ATCTCTCTT--G-GTTCTTGGATGAACTTGTC-AAACTTTTACG-AGT
*** * ** * ** * * *
13689720 TC-ACGATGAAC--C-TTTCCTTCGAGACATTTCCCGAAC-ATTCCA-TGC-TCGGGA-A---AT
112 TCTTTTAT-AACTTCGGTTCCTTAAAG-TA-TTCAAG-ACGA-TCCATTCCTTCGAGACATTTTT
* * * * *
13689774 CGTATCATT---TGGTCCA-AATAGTTG--TCATTTTGT-
172 CG-AACATTCCATGCTCGAGAA-A-TCGCATCATTTGGTC
* * * * ** * ** ** * * *
13689807 AAACTACTATTGAT-A-TTTGAATTAAA-AACTTATTTATGTGAGAATT-GTATCTCTCTTGGTT
1 CAAATAGT-TTG-TCATTTTG---TAAACTACTT-TTGGTCTTTGAATTAAAAACT-TATT--TA
* * * **** * * *
13689868 CTTG-G-A-T-AAACTTCTCAAAATT-TT--ACGAGCTCCT-TTATAAC--TT-CGA-TTCCTTA
57 CGTGAGAATTGTATC-TCTCTTGGTTCTTGGATGAACT--TGTCA-AACTTTTACGAGTT-CTT-
* * ** ** * ** ** *
13689921 AAGTATTCAAGGCGATCCTTTCCTTCGAGACATTTCCCGAAC-ATTCCA-GGC-TCGAGA-A-AT
116 --TTA-T-AA--C-TTCGGTTCCTTAAAG-TA-TTCAAG-ACGA-TCCATTCCTTCGAGACATTT
* * * * *
13689981 TGC-ATCATT---TGGTCCA-AATAGGTTG--TCATTTGCAG-C
170 TTCGAACATTCCATGCTCGAGAA-A--TCGCATCATTTG--GTC
** * * * * * * *
13690017 CAGCT--TTTGGT--GTTTGAATTAAA-AAC---T--TATTT-ACA-TGAGAATTGTATCT-C-T
1 CAAATAGTTT-GTCATTTTG---TAAACTACTTTTGGTCTTTGA-ATTAAAAACT-TATTTACGT
* * * ** * * *
13690068 ----CTTG-GT-TCT-TGGACGAACTTTG--GAACTTGTCAAACTTTTTCGAGTTCATTTATAAC
60 GAGAATTGTATCTCTCTTG--GTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
13690124 TTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTCCATGCT
123 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGCT
* *
13690188 CGGGAAGTCGCATCATTTGGTC
187 CGAGAAATCGCATCATTTGGTC
* * * * * * *
13690210 TAAATTGTTTGTCTTTTTGTAAACAACTTTTAGTCTTTGAATTAAAAA-TTATTTAAGTAAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13690274 AT-AATCTCTCCTAGTTCTTTGACGACCTTTGGAACTTGTCAAACTTTTAACGAGTTTCTTTTAT
66 -TGTATCTCTCTTGGTTC-TTG--GA----T-GAACTTGTCAAACTTTT-ACGAG-TTCTTTTAT
* **
13690338 AACTTCGGTTCCGTTAAAGTATTCAAGATGATCCATTCCTTCGAGTA-ATTTTTCGAGTATTCCA
120 AACTTCGGTTCC-TTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCA
* * *
13690402 GGCTCGAGAAATTGTATCATTTGGTC
183 TGCTCGAGAAATCGCATCATTTGGTC
* * * *
13690428 CAAATAGGTTTGTCA-TTTGTAACCAACTTTTGGTGTTTGAATTAAAAACTTATTTACATGAG-A
1 CAAATA-GTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13690491 TTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTAATA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTC-TTTTATA
* * * * *
13690556 ACTTCAGTTCCTTAAAGTATTCAATATGA-CCATTCCTTCAAG-CTATTTTTTCGAACATTTCAT
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-A-TTTTTCGAACATTCCAT
* *
13690619 GCTCGGGAAGTCGCATCATTTGGTC
184 GCTCGAGAAATCGCATCATTTGGTC
* * *
13690644 CAAATTGTTTTGATATCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAGA
1 CAAATAG-TTTG---TCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
13690708 GAATTGTATATCTCTTCGTTCTAGGACGAACTTGTCAAACTTTTTACGAGTTCTTTTATAACTTC
62 GAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTC
* * * * * * *
13690773 GATTCGTTAAAGTATTCATGACGATCCTTTTTTCCTTCGAGGCA-TTTCCGAACA-TCCATGCTT
126 GGTTCCTTAAAGTATTCAAGACGATCC---ATTCCTTCGAGACATTTTTCGAACATTCCATGCTC
* *
13690836 GGGAAATCGTATCATTTGGTC
188 GAGAAATCGCATCATTTGGTC
* * * *
13690857 CAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATGAAAAACTT-TTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13690921 TGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTAAGAGCTTC-TTTATAACTTCGATT
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTT
* * ** * * *
13690985 CCTTAAAGTATTCAAGATGATCCTTTCCTTCGAGACATTTCCCCGAACATTCCATGCCCGGGAAG
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTT-TTCGAACATTCCATGCTCGAGAAA
*
13691050 TCGAATCATTTGGTC
194 TCGCATCATTTGGTC
* * *
13691065 CAAATTGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13691130 AG--TCTCTCCTAGTTCTTTGACGAACTTTCGAACCTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTATCTCTCTTGGTTC-TTG--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* ** *
13691193 TTCGGTTCC-TAAAGTATTCAAGACGATATCATTCCTTCGAGTA-ATTTTTCGGTAGTATTCCAG
123 TTCGGTTCCTTAAAGTATTCAAGACGAT-CCATTCCTTCGAG-ACATTTTTC-G-AACATTCCAT
* *
13691256 GCTTGAGAAATTGCATCATTTGGTC
184 GCTCGAGAAATCGCATCATTTGGTC
* * * *
13691281 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATT-AAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-A
* *
13691343 TTGTATATGTATCTCTCTTGGTTCTTGCGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTT
64 ----AT-TGTATCTCTCTTGGTTCTTG-G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
13691408 ATAACTTCAGTTCCTTAAAAGTATTCAATACAACCCATTCCTTCAAG-CTATTTTTCGAACATTT
118 ATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTC
* *
13691472 CATGCTTGAGAAATCGCATCATTTGTTC
181 CATGCTCGAGAAATCGCATCATTTGGTC
* * *
13691500 C-AATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGATTTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
13691563 TGTAACTCTCTTCGTTTTATAGGACGAAATTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGT
66 TGTATCTCTCTTGGTTCT-T-GGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * * *
13691628 TCCTTAAAGTATTAAACGATGATCCTTTCCTTCGAGGCATTTCT-AAACATTCCATGCTTGGGAA
129 TCCTTAAAGTATTCAA-GACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAA
*
13691692 ATCGTATCATTTGGGTC
193 ATCGCATCATTT-GGTC
* * * * *
13691709 CAAATAATTTGTCATTTTGTAAATTACTATTGGTCTTTG-ATTTAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * *
13691773 TGTATCTCTATTTTGTTCTTGGATAAACTTCTCAAACTTTTACGAGCTCCTTTATAACTTCGATT
66 TGTATCTCT-CTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* ** * *
13691838 CCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAGCATTCCATGCTCG-GAAGT
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAAT
*
13691902 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * * *
13691916 CAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTGAGACT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13691981 AT-AATCTCTCCTAGTTCCTTGACAAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAA
66 -TGTATCTCTCTTGGTT-CTTG---GA--T--GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * ***
13692044 CTTTGGTTCCTTAAAGTATTCATGATGATCCATTCGTTCGAGTA-ATTTTTCGCGTATTCCA-GC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGC
*
13692107 TCGAGAAAAT-GCATCATTTGGTA
186 TCGAG-AAATCGCATCATTTGGTC
* * * * * *
13692130 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTAGTGTTTGAATTAAAAACTTATCTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13692193 TTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTGTAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
13692258 CTTCAGTTTCTTAAAGTATTCAATACGATCCATTCCTTCAAG-C-TATTTTCGAACATTTCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACAT-TTTTCGAACATTCCATGC
* *
13692321 TCGGGAAGTCGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * *
13692344 C-AATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTCGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13692407 TGTATCTCTCTTCGTT-TTAAGACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATT
66 TGTATCTCTCTTGGTTCTT-GGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * ** *
13692471 CCTTAAAGTATTCACGACGATCC-TTTCTTTGAGGCATTTCCCAGAACATTCCATGCTCGGGAAA
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAA
*
13692535 TCGTATCATTTGGTC
194 TCGCATCATTTGGTC
* * *
13692550 CAAATAGTTTGTCATTTTGTAAACTACTATTGGACTTTGAATTAAAAACTTATTTATGTGA-AAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
13692614 TGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTACAAGCTC-CTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* ** * * * *
13692678 CTTAAAGTATTTAAGGTGATCCTTTCCTTCGAGACA-TTTCCTGAACATTCCATGCTCGGGAAGT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
13692742 CGCATCATTTGGTC
195 CGCATCATTTGGTC
* * * *
13692756 TAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC-T-TTTAAGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
13692819 AT-AATCTCTCCTCCTAGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
66 -TGTATCTCT-CT--TGGTTC-TTG--G-A--T--GAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * ** *
13692883 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCGTTCGAG-CAATTGTTCGAGTATTTCA
119 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCA
* *
13692947 GGCTCGAGAAATTGCATCATTTGGTC
183 TGCTCGAGAAATCGCATCATTTGGTC
* * * * * * * * *
13692973 TAAATAGGTTGTC-GTTTG-CAGCCAGCTTTTGGTGTTTGAATT-TAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13693035 TTGTATCTCTCTTAGTTCTTGGACGAACTTTGGAACTTGTCAAACCTTTT-CGAGTTCATTTATA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAA-CTTTTACGAGTTCTTTTATA
* * * *
13693099 ACTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCTAG-C-TATTTTCGAATATTCCATG
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACAT-TTTTCGAACATTCCATG
* *
13693162 TTCGAGAAGTCGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* * * *
13693186 CAAATTGTTTGTCATTTTATAAACTACTTTTGGTCTTTGAATTAAAAACCTA-TTA-GCAGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAA
* * * **
13693249 TTGTATCCCTCTTCGTTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
65 TTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * ** * *
13693314 CCTTAACGTATTCACGACGATCCTTTCCTTCGAGATATTTCCCCGGACATTCCATGCTCAAGAAA
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTT-TTCGAACATTCCATGCTCGAGAAA
*
13693379 TCGTATCATTTGGGTC
194 TCGCATCATTT-GGTC
* * *
13693395 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTCA-AAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13693459 TGTATCCCTCTTGGTTCTTGGACGAACTTCTCAAACTTTTACGAGTTC-TTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
*
13693523 CTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTTCGAGA-ATTCCAGGCTCGA-AAA
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGA-ACATTCCATGCTCGAGAAA
*
13693585 TTGCATCATTTGGTC
194 TCGCATCATTTGGTC
* * * *
13693600 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * *
13693663 TTCTATCTCTCTTGGTTCCTGGACGAAATTTGGAACTTGTGAAACTTTTTCGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTT-CTTG--G--A--T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
13693728 CTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTTCGAACATTTCATG
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-A-TTTTTCGAACATTCCATG
* *
13693792 CTCGGGAAGTCGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* * * * *
13693816 CAAATTGTTTGTCTTTTTGTAAACTACTTTTGGTCTTCGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13693880 TGTATCTCTCTTCGTTCTAGGACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
13693945 CTTAAAGTATTCACGACGATCCTTTCCTTCGAGGCA-TTTCCAGAGCATTCCATGCTCGGGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
* *
13694009 CGTATCATTTGGTT
195 CGCATCATTTGGTC
* * * * *
13694023 CAAATAGTTTGTCATTTTGCAAACTACTATTGGACTTTGAATTAAAAACTTATTTATGTAAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
13694088 TGTATCTCTCTTGGTTCTTGGATGAACTTCTCAATCTTTTACGAGCTCCTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * ** * * *
13694153 CTTAAAGTATTTATGGCGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCACGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13694218 GCATCATTTGGTC
196 GCATCATTTGGTC
* * * *
13694231 CAAATTGTTTGTCATTTTGTAAACAACTCTTGGTCTTTGAATTAAAAACTTATTTAAGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** *
13694296 AT-AATCTCTCCTATTTCTTTGACGAACCTTGGAACTTGTCAAACTTTTACGAATTCTTTTTATA
66 -TGTATCTCTCTTGGTTC-TTG--G-A---T-GAACTTGTCAAACTTTTACGAGTTC-TTTTATA
** *
13694360 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTA-ATTTTTCGAGTATTCCAGG
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATG
*
13694424 CTCGAGAAATTGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* * * * * *
13694448 CAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGGATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
** * *
13694511 TTGTATCTCTCTTGGTTCTTGGGCGAACTTTGGCACTGTCAAACTTTTTCGAGTTCATTTATAAC
65 TTGTATCTCTCTTGGTTCTTGGATGAAC--T-----TGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
13694576 TTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCTAG-CTATTTTTCAAACATTCCATGCT
123 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGCT
* *
13694640 CGGGAAGTCGCATCATTTGGTC
187 CGAGAAATCGCATCATTTGGTC
* * * * *
13694662 TAAATTGTTTGTCATTTTGTAAACTACTTTTAGTCTTTGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * **
13694726 TGTATCCCTTTTCGTTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
13694791 CTTAAAGTATTCACGACGATCCTTTCCTTCGAGATA-TTTCCTGAACATTCCATCCTCGGGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
* *
13694855 CGTATCATTTGGTT
195 CGCATCATTTGGTC
* * *
13694869 CAAATAGTTTGTCATTTTGTAAACTACTATTAGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * * * *
13694934 TGTATCTCTCTTGGTTCTTGGACAAACTTCTCAAGCTTTTACGAGTTCTTTTATAACTGCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* ** *
13694999 CTTAAAGTATTCACGACGATCCATTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
*
13695064 GTATCATTTGGTC
196 GCATCATTTGGTC
* * *
13695077 C-AA-A-TTTGTCATTTTGTCAAACTACTATTGAT-TTTGAATTAAAAACTTATTTATGTGAGAA
1 CAAATAGTTTGTCATTTTGT-AAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * **
13695138 TTGTATCTCTCTTCTGGTTCTTGGATAAACTTCTCAAACTTTTACGAGCTCCTTTGTAACTTCAA
65 TTGTATCTCTC-T-TGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * **
13695203 TTCCTTAAAGTATTCAAGGCGATCCTTTCCTTCGAGACATATCCCGAACATTCCATGCTCG-GTA
128 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAG-A
*
13695267 AGTCGCATCATTTGGTC
192 AATCGCATCATTTGGTC
* * * *
13695284 CAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTGAGACT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13695349 AT-AATCTCTCCTAGTTCTTTGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
66 -TGTATCTCTCTTGGTTC-TTG---GA---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * ***
13695413 CTTTGGTTCCTTAAAGTATTCAAAATGATTCATTCCTTCGAGTA-ATTTTTCGCGTATTCCA-GC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATGC
*
13695476 TCGAGAAAAT-GCATCATTTGGTA
186 TCGAG-AAATCGCATCATTTGGTC
* * * *
13695499 CAAATAGGTTGTCA-TTTGT-AACTAGCTTTTGGTGTTTGAATTAAAAACTTATCTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13695562 TTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTGTAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
13695627 CTTCAGTTTCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTTCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
*
13695691 TCG-GAAGTCGCATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * *
13695713 CAAATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTCGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13695777 TGTATCTCTCTTCGTTCTAGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * *
13695842 CTTAAAGTATTCACGACAATCCTTTCCTTCGAGGCA-TTTCCAGAACATTCCATGCTCGAGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
*
13695906 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * * *
13695920 CAAATAGTTTGTCATTTTGTAAACTACTATTGGACTTTGAATTAAAAACTTATTTATGTAAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
13695985 TGTATCTCTCTTGTTTCCTGGATGAACTTCTCAAACTTTTACGAGCTCTTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* ** * * * *
13696050 ATTAAAGTATTCAAGGTGATCCTTTCCTTCGAGACATTTCTCGAACATTCCATGCTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13696115 GCATCATTTGGTC
196 GCATCATTTGGTC
* * * *
13696128 CAAATTGTTTGTCATTTTGTAAACAACTTTCGGTCTTTGAATTAAAAACTTATTTAAGTGAGAA-
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13696192 TATATCTCTCCTAGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTATCTCTCTTGGTTC-TTG--G-A--T--GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * ** *
13696257 TTCAGTTTCTTAAAGTATTCAAGATGATCCATTCGTTCGAG-CAATTTTTCGAGTATTCCAGGCT
123 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGCT
*
13696321 CGAGAAATTGCATCATTTGGTC
187 CGAGAAATCGCATCATTTGGTC
* * * * * * *
13696343 TAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGAATTTAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
13696406 TTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAGCTTGTCAAACTTTTTCGAGTTCATTTCTAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
13696471 CTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAATATTCCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
* *
13696535 TC-AGGAAGTCTCATCATTTGGTC
186 TCGA-GAAATCGCATCATTTGGTC
* *
13696558 CAAATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA-TTA-GCAGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAA
* * * ** * *
13696621 TTGTATCCCTCTTCGTTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTTAGAACTTCGATT
65 TTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * ** *
13696686 CCTTAACGTATTCACGACGATCCTTTGCTTCGAGAAATTTCCCGAACATTCCATGCTCGGGAAAT
130 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAAT
*
13696751 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * * * *
13696765 CAAATAGTTTTTCTTTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTCAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13696830 TGTATC-CTCTTGGTTCTTGGACGAACTTCTCAAACTTTTACGAGTTATTTTATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
** * * *
13696894 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTCCCGAACATTCCATGGTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
13696959 GCATCATTTGGTC
196 GCATCATTTGGTC
* * * *
13696972 CAAATTGTTTGTCATTTTGTAAACAAATTTTGGTCTTGGAATTAAAAACTTATTTACGTGAGAA-
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13697036 TATAGTCTCTCTCTAGTTCTTTGACGAACTTCTGAACTTGTCCAACTTTTACGAGTTCTTTTATA
66 TGTA-TCTCTCT-TGGTTC-TTG--G-A----TGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * *
13697101 ACTTCGGTTCC-TAAAGTATTAAAGACGATCCATTCCTTCGAGTA-TTTTTTTGAGTATTCCATT
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGA--A---CATT
*
13697164 CCA-GCTCGAGAAATTGCATCATTTGGTC
180 CCATGCTCGAGAAATCGCATCATTTGGTC
* * * * *
13697192 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATTAAAAACTTCTTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
*
13697255 TTGTATCTCTCTTGGTTCTTGAACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCTTTTATAA
65 TTGTATCTCTCTTGGTTCTTG---G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * ** *
13697320 CTTCGGTTCCTTAAAATATTCAAGATGATCCATTCCTTCGAG-CAATTTTTCGAGTATTCCAGGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
* *
13697384 TCGAGAAATTGTATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * *
13697407 CAAATAGGTTT-TCA-TTTGTAATC-AGCTTATGGTGTTTGAATTAAAAACTTATTTACATGAGA
1 CAAATA-GTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
13697469 ATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATA
64 ATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * *
13697534 ACTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTCCATG
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATG
* *
13697598 CTCGGGAAGTCGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* * * * *
13697622 CAAATAGTTTGTCATTTTGTTAATTACTTTTGGTCTTTGAAATAAAAACTTA-TTAAGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** *
13697686 TGTATCTCTCTTCGTTCTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTGATAACTTCGGT
66 TGTATCTCTCTTGGTTCT-T-GGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
13697751 TCCTTAAAGTATTCACGACGATCCTTTCCTTCGTGATA-TTTCCTGAACATTCCATGCTC-AGGA
129 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGA-GA
*
13697814 AATCGTATCATTTGGTC
192 AATCGCATCATTTGGTC
* * * * *
13697831 CAAATAGTTTGTCATTTTGTAAACTACTATTGATATTTGAATTAAAAACTTATTTATGTCAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13697896 TGTATCTCTCTTGGTTCTTGGATGAACTTTTCAAACTTTTACGAGTTATTTTATAACTTTGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * ** *
13697961 CTTAAAGTATTCAAGATGATCCATCCCTTCGAG-CATTTTTTCGAGTATTCCAGGCTCGAGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACA-TTTTTCGAACATTCCATGCTCGAGAAAT
*
13698025 TGCATCATTTGGTC
195 CGCATCATTTGGTC
* * * * *
13698039 CAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13698102 TTGTATCTCTCTTGGTTCTTGGATGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
13698167 CTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTTCATGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
* *
13698231 TCG-GTTAGTCGCATCATTTGGTC
186 TCGAG-AAATCGCATCATTTGGTC
* * * *
13698254 CAAATTGTTTGTCATTTTGTAAACTACTTTTGATCTTTGAATTAAAAACTTA-TTAGGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
13698318 TGTATCTCTCTTCGTTCTAGGACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * **
13698383 CTTAAAGTATTCACGATGATCC-TCTCCTTCGAGGCATTTCCCGAACATTCCATGCTCGAGAAAT
131 CTTAAAGTATTCAAGACGATCCAT-TCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAAT
*
13698447 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * * * *
13698461 CAAATAGTTTGTC-TTTTTTTAATTACTATTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * * *
13698525 TCTATCTCTATTGGTTCTTGGACGAACTTCTCAAACTTTTATGAGCTCCTTTATAACTTCGATTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
13698590 CTTAAAGTATTCAAGACGATCCTTTCCTTCGAGA-ATTTCTCGAACATTCCATGCTCGGGAAGTC
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
*
13698654 GCATCATTTTTGTC
196 GCATCA-TTTGGTC
* * *
13698668 CAAATTA-TTTGTCATTTTGTAAACAAATTTTGGTCTTGGAATTAAAAACTTATTTACGTGAGAA
1 CAAA-TAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
13698732 -TATAGTCTCTCTCTAGTTCTTTGACGAACTTCTGAACTTGTCCAACTTTTACGAGTTCTTTTAT
65 TTGTA-TCTCTCT-TGGTTC-TTG--G-A----TGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* ** *
13698796 AACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGTA-ATTTTTTGAGTATTCCAG
120 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCAT
*
13698859 GCTCGAGAAATTGCATCATTTGGTC
184 GCTCGAGAAATCGCATCATTTGGTC
* * * * *
13698884 CAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATTAAAAACTTCTTTACATGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
*
13698947 TTGTATCTCTCTTGGTTCTTGAACGAACTTTGGAACTTGACAAACTTTTACGAGTTCTTTTATAA
65 TTGTATCTCTCTTGGTTCTTG---G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * ** *
13699012 CTTCGGTTCCTTAAAATATTCAAGATGATCCATTCCTTCGAG-CAATTTTTCGAGTATTCCAGGC
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATGC
* *
13699076 TCGAGAAATTGTATCATTTGGTC
186 TCGAGAAATCGCATCATTTGGTC
* * * *
13699099 CAAATAGGTTT-TCA-TTTGT-AACCAGCTTATGGTGTTTGAATTAAAAACTTATTTACATGAGA
1 CAAATA-GTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
13699161 ATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTTATA
64 ATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATA
** * * *
13699226 ACTTTAGTTCCTTAAAATATTCAATACGATCCATTCCTTCAAG-CTATTTTTCGAACATTCCATG
121 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAC-ATTTTTCGAACATTCCATG
* *
13699290 CTCGGGAAGTCGCATCATTTGGTC
185 CTCGAGAAATCGCATCATTTGGTC
* * * *
13699314 CAAATAGTTTGTCATTTTGTTAATTACTTTTGGTCTTTGAATTAAAAACTTA-TTAAGAGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** *
13699378 TGTATCTCTCTTCGTTCTAGGACAAACTTGTCAAACTTTTACGAGTTCTTTGATAACTTCGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
13699443 CTTAAAGTATTCATGACGATCCTTTCCTTCGTGATA-TTTCCTGAACATTCCATGCTCGGGAAAT
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTC-GAACATTCCATGCTCGAGAAAT
*
13699507 CGTATCATTTGGTC
195 CGCATCATTTGGTC
* * *
13699521 CAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTCAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
13699586 TGTATCTCTCTTGGTTCTTGGACGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTC
66 TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * *
13699651 CTTAAAGTATTCAAGATGATCCATTCCTTCGAG-CATTTTTTC-AAGTATTCCAGGCTCGAGAAA
131 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACA-TTTTTCGAA-CATTCCATGCTCGAGAAA
*
13699714 TTGCATCATTTGGTC
194 TCGCATCATTTGGTC
* * * *
13699729 CAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAA
1 CAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
13699792 TTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTT-TGAGTTCATTTATAA
65 TTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * **
13699856 CTTCAGTTCCTTAAAGTATTCAAGGCGATACTTTCCTTCGAGGCATTTCCCGAACATTCCATGCT
122 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCT
* *
13699921 CGGGAAGTCGCATCATTTGGTC
187 CGAGAAATCGCATCATTTGGTC
* * * *
13699943 CAAATTGTTTGTCATTTTGCAAACAACTTTTGGTCTTGGAATTAAAAACTTATTTACGTGAGAAT
1 CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
13700008 ATAATCTCTC
Statistics
Matches: 13094, Mismatches: 1900, Indels: 1337
0.80 0.12 0.08
Matches are distributed among these distances:
186 6 0.00
187 5 0.00
188 5 0.00
189 11 0.00
190 4 0.00
191 5 0.00
192 5 0.00
193 8 0.00
194 25 0.00
195 11 0.00
196 17 0.00
197 10 0.00
198 13 0.00
199 11 0.00
200 10 0.00
201 11 0.00
202 28 0.00
203 35 0.00
204 106 0.01
205 342 0.03
206 1030 0.08
207 2230 0.17
208 1895 0.14
209 761 0.06
210 204 0.02
211 113 0.01
212 328 0.03
213 635 0.05
214 1375 0.11
215 1737 0.13
216 909 0.07
217 403 0.03
218 244 0.02
219 336 0.03
220 166 0.01
221 35 0.00
222 25 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (208 bp):
CAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGCTCGAGAAATC
GCATCATTTGGTC
Found at i:13700201 original size:157 final size:157
Alignment explanation
Indices: 13699906--13700201 Score: 418
Period size: 157 Copynumber: 1.9 Consensus size: 157
13699896 AGGCATTTCC
* *
13699906 CGAACATTCCATGCTCGGGAAGTCGCATCATTTGGTCCAAATTGTTTGTCATTTTGCAAACAACT
1 CGAACATTCCATGCTCAGGAAGTAGCATCATTTGGTCCAAATTGTTTGTCATTTTGCAAACAACT
* * **
13699971 TTTGGTCTTGGAATTAAAAACTTATTTACGTGAGAATATAATCTCTCCTAGTTCTTTGACGAACT
66 TTTGGTCTTCGAATTAAAAACTTATTTACGAGAGAATATAATCTCTCCTAGTTCTAGGACGAACT
*
13700036 TCCGAACTTGTCAAACTTTTACGTGTT
131 TCCAAACTTGTCAAACTTTTACGTGTT
* *
13700063 CGAACATTCCATTG-TCAGGAAGTAGCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACTAC
1 CGAACATTCCA-TGCTCAGGAAGTAGCATCATTTGGTCCAAATTGTTTGTCATTTTGCAAACAAC
* * * *
13700127 TTTTGGTCTTCGAATTAAAAACTTA-TTAGGAGAGAAT-TGTATCTCTCTTCGTTCTAGGACGAA
65 TTTTGGTCTTCGAATTAAAAACTTATTTACGAGAGAATAT-AATCTCTCCTAGTTCTAGGACGAA
*
13700190 CTTGTCAAACTT
129 CTT-CCAAACTT
13700202 TTACGAGTTC
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
155 1 0.01
156 32 0.26
157 87 0.71
158 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (157 bp):
CGAACATTCCATGCTCAGGAAGTAGCATCATTTGGTCCAAATTGTTTGTCATTTTGCAAACAACT
TTTGGTCTTCGAATTAAAAACTTATTTACGAGAGAATATAATCTCTCCTAGTTCTAGGACGAACT
TCCAAACTTGTCAAACTTTTACGTGTT
Found at i:13700465 original size:208 final size:208
Alignment explanation
Indices: 13700087--13703544 Score: 3636
Period size: 208 Copynumber: 16.4 Consensus size: 208
13700077 TCAGGAAGTA
* *
13700087 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTCGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
13700152 -TTAGGAGAGAATTGTATCTCTCTTCGTTCTAGGACGAACTTGTCAAACTTTTACGAGTTCTTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
13700216 ATAAGTTCGGTTCCTTAAAGTATTCACGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
131 ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
13700281 TGCTCGAGAAATC
196 TGCTCGAGAAATC
* * * *
13700294 GTACCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACGTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * *
13700359 TTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTAAGAGCTTC-TT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAG-TTCTTT
13700423 TATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCC
130 TATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCC
*
13700488 ATGCTCGAGAAGTC
195 ATGCTCGAGAAATC
* * *
13700502 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
13700567 ATTAAGTGAGAATAT-AATCTCT-TCTAGTTCTTTGACGAACTTTGGAACTTGTCAAACTTTTAC
66 TTTACGTGAGAAT-TGTATCTCTCT-TGGTTC-TTG--G-A---T-GAACTTGTCAAACTTTTAC
* *
13700630 GAGTTCTTTTATAACTTCGGTTCCTTGAAGTATTCAAGACGAT-CTATTCCTTCGAGTA-A-TTC
121 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCT-TTCCTTCGAG-ACATTTC
*** ** * *
13700692 TTTTAGTATTCCAGGCTCGAGAAATT
184 -CCGAACATTCCATGCTCGAGAAATC
* * * * *
13700718 GCATCATTTGGTCCAAATAGGTTGTCA-TTTG-CAACCAGCTTTTGGTGTTTGATTTAAAAACTT
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTT
* * **
13700781 ATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTGAAACTTTTTTG
65 ATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACG
* * * * * *
13700846 AGTTCATTTATAACTTC-AGTTCCTTAAAGTATTAAATACGATTCATTCCTTC-A-ATCTATTTT
122 AGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGA-C-ATTTC
** * *
13700908 TTGAACATTTCATGCTC-AGGAAGTC
184 CCGAACATTCCATGCTCGA-GAAATC
*
13700933 GCATCATTTGTTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * ** * * *
13700998 -TTAGGAGAGAATTGTATCTCTCTTCATTCTAGGACGAACTTGTCAAAGTTTTACGAGTTCTTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
13701062 ATAACTTCGATTCCTTTAACTATTCACA-ACGATTCTTTCCTTCGAGATATTTCCTGAGCATTCC
131 ATAACTTCGATTCCTTAAAGTATTCA-AGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCC
13701126 ATGCTCGAGAAATC
195 ATGCTCGAGAAATC
* *
13701140 GTATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
13701205 TTTATGTTAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTAAGAGCTTC-TT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAG-TTCTTT
* *
13701269 TATAACTTCGATTCATTAAAATATTCAAGACGATCCTTTCCTTCGAGACA-TTCCCGAACATTCC
130 TATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCC
*
13701333 ATGCTCTG-GAAGTC
195 ATGCTC-GAGAAATC
* * *
13701347 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * *
13701412 TTTACGTGAGAA-TATAGTCTCTCCTAGTTCTTTGACGAACTATCGAACTTGTCAAACTTTTACG
66 TTTACGTGAGAATTGTA-TCTCTCTTGGTTC-TTG--G----AT-GAACTTGTCAAACTTTTACG
* * * * * **
13701476 AGTTCTTTTATAACTTTGATTCC-TAAAGTATTCAACATGATCCATTCCTTCGGGTA-ATTTTTC
122 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAG-ACATTTCCC
*** * *
13701539 GCGTATTCCAGGCTCGA-AAATT
186 GAACATTCCATGCTCGAGAAATC
* * *
13701561 GCATCATTTGGTCCAAATAGGTTGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATTAAAAACTT
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTT
* * *
13701624 ATTTACATGAGAATTGTATCTCTCCTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCG
65 ATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACG
* * *
13701689 AGTTCATTTATAACTTC-AGTTCCTTAAAGTATTCAATACGATCCATTCCTTCATTCCTTCAAG-
122 AGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTC-A-A-GA-CGA-TCC-T--TTCCTTCGAGA
** * * *
13701752 CTATTTTTCGAACATTTCATGCTCGGGAAGTC
178 C-ATTTCCCGAACATTCCATGCTCGAGAAATC
*
13701784 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAGCTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
13701849 -TTAGGAGAGAATTGTATCTCTCTTCGTCGTTCTAGGACGAACTTGTCAAACTTTTACAAGTTCT
66 TTTACGTGAGAATTGTATCTCTCTT-G--GTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCT
* *
13701913 TTTATAACTTCGATTCCTTAAAGTATTCATGACGATCCTTTCCTTCGAGGCATTTCCCGAACATT
128 TTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATT
* *
13701978 CCATGCACGGGAAATC
193 CCATGCTCGAGAAATC
* * *
13701994 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
13702059 TTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTCTCAAACTTTTACGAGCTCCTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
13702124 ATAACTTCGATTCCTTAAAGTATTCAAGGCGATCCTTTCCTTCGAGATATTTCCCGAACATTCCA
131 ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
* *
13702189 TGCTCGGGAAGTC
196 TGCTCGAGAAATC
* *
13702202 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * ** * **
13702267 -TTAGGAGAGAATTGTATCTCTCTTCATTCTAGGATGAACTTGTCAAACTTTTATTAGTTCTTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* ** * ** ** **
13702331 ATAACTTTGGCTCCTTAAAGTTTTCAAGACGATCAATTCCTTCGAG-CAATTTTTCGAGTATTCC
131 ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGAC-ATTTCCCGAACATTCC
* *
13702395 AGGCTCGAGAAATT
195 ATGCTCGAGAAATC
* ** * * * * *
13702409 TCATCATTTTGGTTGAATTAGGTGGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATT-AAAACT
1 GCATCA-TTTGGTCCAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACT
* *
13702471 TATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTC
64 TATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTAC
* * * * *
13702536 GAGTTCATTTATAACTTC-AGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAG-CTATTTT
121 GAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGAC-ATTTC
* *
13702599 TCGAACATTTCATGCTCGAGAAATC
184 CCGAACATTCCATGCTCGAGAAATC
*
13702624 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
13702689 -TTAGGAGAGAATTGTATTTCTCTTCGTTCTAGGCTGAACTTGTCAAACTTTTAGGAGTT-TTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
13702752 ATAACTTCGATTCCTTAAAGTATTCACGATGATCTTTTCCTTCGAGACATTTCCCGAACATTCCA
131 ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
13702817 TGCTCGAGAAATC
196 TGCTCGAGAAATC
* * * * * *
13702830 GTATAATTTGGTCTAAATATTTTGCCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
13702895 TTTATGTGAGAATTGTACCTCTCTTGGTTCTTGGACGAACTTGTCAAACTTTTATGAGCTCTTTT
66 TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
13702960 ATAACATCGATTCCTCAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCT
131 ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
* * *
13703025 TGCCCGGGAAGTC
196 TGCTCGAGAAATC
* * * * * *
13703038 GCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACAAGTTTTTGTATTTGGATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
* *
13703103 TTTACGTGAGAATAT-AATCTCTCTTAGTTCTTTGATGAACTTCCGAACTTGTCAAACTTTTACG
66 TTTACGTGAGAAT-TGTATCTCTCTTGGTTC-TTG--G-A--T--GAACTTGTCAAACTTTTACG
* * ** * * **
13703167 AGATCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGTGATCCATTCTTTCGAG-CAATTTTTC
122 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGAC-ATTTCCC
** * *
13703231 GAGTATTCCAGGCTCGAGAAATT
186 GAACATTCCATGCTCGAGAAATC
* * * * * *
13703254 GTATCATTTGGTTCAAATAGGTTGTCA-TTT-T-AACCAGCTTTTGGTGTTTGAATTAATAACTT
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA-CTTTTGGTCTTTGAATTAAAAACTT
* **
13703316 ATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTTG
65 ATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A---T-GAACTTGTCAAACTTTTACG
* * * * *
13703381 AGTTCATTTATAGCTTC-AGTTCCTTAAAGTATTCAAGGCGATACTTTCCTTCGAGGCATTTCCC
122 AGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCC
* * *
13703445 GAACATTCCATGCTTGGGAAGTC
186 GAACATTCCATGCTCGAGAAATC
* * * *
13703468 GCATCATTTGGTCCAAATTGTTTGTCATTTTGCAAACAAC-TTTGGTCTTGGAATTAAAAACTTA
1 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
13703532 TTTACGTGAGAAT
66 TTTACGTGAGAAT
13703545 ATAATCTCTC
Statistics
Matches: 2725, Mismatches: 409, Indels: 226
0.81 0.12 0.07
Matches are distributed among these distances:
206 141 0.05
207 548 0.20
208 639 0.23
209 15 0.01
210 99 0.04
211 27 0.01
212 13 0.00
213 105 0.04
214 263 0.10
215 431 0.16
216 262 0.10
217 11 0.00
218 50 0.02
219 4 0.00
222 27 0.01
223 50 0.02
224 30 0.01
225 5 0.00
226 5 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (208 bp):
GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCA
TGCTCGAGAAATC
Found at i:13702632 original size:630 final size:630
Alignment explanation
Indices: 13700061--13703544 Score: 3617
Period size: 630 Copynumber: 5.5 Consensus size: 630
13700051 CTTTTACGTG
* * *
13700061 TTCGAACATTCCATTG-TC-AGGAAGTAGCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAAC
1 TTCGAACATTCCA-TGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* * * * *
13700124 TACTTTTGGTCTTCGAATTAAAAACTTA-TTAGGAGAGAATTGTATCTCTCTTCGTTC-T-AGGA
64 TACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGAGAA
* * * *
13700186 -CGAACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTCGGTTCCTTAAAGTATTCACGACGATC
129 TGGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATC
* * *
13700250 CTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGAGAAATCGTACCATTTGGTCCAAATAGT
194 CTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* * * * *
13700315 TTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACGTATTTATGTGAGAATTGTATCTC
259 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAATTGTATCTC
* * *
13700380 TCTTGGTTCTTGGATGAACTTCTCAAACTTTTAAGAGCTTC-TTTATAACTTCGATTCCTTAAAG
324 TCTTGGTTCTAGGATGAACTTGTCAAACTTTTATGAG-TTCTTTTATAACTTCGATTCCTTAAAG
* *
13700444 TATTCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGAGAAGTCGCATCAT
388 TATTCAAGACGATCATTTCCTTCGAGA-ATTTTCCGAACATTCCATGCTCGAGAAGTCGCATCAT
* * *
13700509 TTGGTCCAAATT-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTAATTA-A
452 TTGGT-CAAATTAGTTTGTCATTTTGTAAACCACTTTTGGTCTTTGAATTAAAAACTTATTTACA
*
13700572 GTGAGAATAT-AATCTCT-TCTAGTTCTTTGACGAACTTTGGAACTTGTCAAACTTTTACGAGTT
516 -TGAGAAT-TGTATCTCTCT-TAGTTCTTTGA-GAACTTT-GAACTTGTCAAACTTTTACGAGTT
* * *
13700635 CTTTTATAACTTCGGTTCCTTGAAGTATTCAAGACGATCTATTCCTTCGAGTAATTCT
576 CTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CATT-T
* ** * * * * *
13700693 TT-TAGTATTCCAGGCTCGAGAAATTGCATCATTTGGTCCAAATAGGTTGTCA-TTTG-CAACCA
1 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA
* * *
13700755 GCTTTTGGTGTTTGATTTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGA
66 -CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-GA-GA
* ** * * *
13700820 ACTTTGGAACTTGTGAAACTTTTTTGAGTTCATTTATAACTTC-AGTTCCTTAAAGTATTAAATA
128 A---TGGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGA
* * *** * * * *
13700884 CGATTCATTCCTTC-A-ATCTATTTTTTGAACATTTCATGCTCAGGAAGTCGCATCATTTGTTCC
189 CGATCCTTTCCTTCGAGA-C-ATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCC
*
13700947 AAATAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAGAGAATT
252 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAATT
** * * *
13701011 GTATCTCTCTTCATTCTAGGACGAACTTGTCAAAGTTTTACGAGTTCTTTTATAACTTCGATTCC
317 GTATCTCTCTTGGTTCTAGGATGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTCC
* * * *
13701076 TTTAACTATTCACA-ACGATTC-TTTCCTTCGAG-ATATTTCCTGAGCATTCCATGCTCGAGAAA
382 TTAAAGTATTCA-AGACGA-TCATTTCCTTCGAGAAT-TTTCC-GAACATTCCATGCTCGAGAAG
* * *
13701138 TCGTATCATTTGGTCCAAA-TAGTTTGTCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAAC
443 TCGCATCATTTGGT-CAAATTAGTTTGTCATTTTGTAAACCACTTTTGGTCTTTGAATTAAAAAC
** * * * *
13701202 TTATTTATGTTAGAATTGTATCTCTCTTGGTTC-TTG-G-A---TGAACTTCTCAAACTTTTAAG
507 TTATTTACATGAGAATTGTATCTCTCTTAGTTCTTTGAGAACTTTGAACTTGTCAAACTTTTACG
* * *
13701261 AGCTTC-TTTATAACTTCGATTCATTAAAATATTCAAGACGATCCTTTCCTTCGAGACA-TT
572 AG-TTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CATTT
** * * *
13701321 CCCGAACATTCCATGCTCTG-GAAGTCGCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACA
1 TTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACT
* * * *
13701385 AATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TATAGTCTCTCCTAGTTCTTTGACG
65 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTA-TCTCTCTTGGTTC-TTGA-G
* * *
13701449 AACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCC-TAAAGTATTCAACA
127 -A--ATGGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * ** *** * * *
13701513 TGATCCATTCCTTCGGGTA-ATTTTTCGCGTATTCCAGGCTC-GAAAATTGCATCATTTGGTCCA
189 CGATCCTTTCCTTCGAG-ACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCA
* * * * *
13701576 AATAGGTTGTCA-TTTGTAACCAGCTTTTGGTGTTTGAATTAAAAACTTATTTA-CATGAGAATT
253 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGA-GAGAATT
* * *
13701639 GTATCTCTCCTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTT-TCGAGTTCATTTATAAC
317 GTATCTCTCTTGGTTC-T--A-GGA---T-GAACTTGTCAAACTTTTAT-GAGTTCTTTTATAAC
* * * *
13701703 TTC-AGTTCCTTAAAGTATTCAATACGATCCATTCCTTCATTCCTTCAAGCTATTTTTCGAACAT
373 TTCGA-TTCCTTAAAGTATTCAAGACGAT-CA-----T--TTCCTTCGAG-AATTTTCCGAACAT
* * *
13701767 TTCATGCTCGGGAAGTCGCATCATTTGGTCCAAA-TAGTTTGTCATTTTGTAAACTACTTTTGGT
428 TCCATGCTCGAGAAGTCGCATCATTTGGT-CAAATTAGTTTGTCATTTTGTAAACCACTTTTGGT
* * * *
13701831 CTTTGAATTAAAAGCTTA-TTAGGA-GAGAATTGTATCTCTCTTCG-TCGTTCT-AGGAC---GA
492 CTTTGAATTAAAAACTTATTTA-CATGAGAATTGTATCTCTCTTAGTTC-TT-TGAGAACTTTGA
* * *
13701889 ACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCATGACGATCCTTT
554 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATT
13701954 CCTTCGAGGCATTT
618 CCTTCGA-GCATTT
** * * * *
13701968 CCCGAACATTCCATGCACGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACTA
1 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA
* *
13702033 CTATTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTG-G-AT-
66 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGAGAATG
* * * *
13702095 GAACTTCTCAAACTTTTACGAGCTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGGCGATCCT
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCT
* * *
13702160 TTCCTTCGAGATATTTCCCGAACATTCCATGCTCGGGAAGTCGCATCATTTGGTCCAAATTGTTT
196 TTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
13702225 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAGAGAATTGTATCTCTC
261 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAATTGTATCTCTC
** * * ** *
13702289 TTCATTCTAGGATGAACTTGTCAAACTTTTATTAGTTCTTTTATAACTTTGGCTCCTTAAAGTTT
326 TTGGTTCTAGGATGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTAT
* * ** * * **
13702354 TCAAGACGATCAATTCCTTCGAGCAATTTTTCGAGTATTCCAGGCTCGAGAAATTTCATCATTTT
391 TCAAGACGATCATTTCCTTCGAG-AATTTTCCGAACATTCCATGCTCGAGAAGTCGCATCA-TTT
** * * *
13702419 GGTTGAATTAGGTGGTCA-TTTGT-AACCAGCTTTTGGTGTTTGAATT-AAAACTTATTTACATG
454 GGTCAAATTAGTTTGTCATTTTGTAAACCA-CTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* * * *
13702481 AGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTTCGAGTTCATTT
518 AGAATTGTATCTCTCTTAGTTCTTTGA-GAACTTT-GAACTTGTCAAACTTTTACGAGTTCTTTT
* *
13702546 ATAACTTCAGTTCCTTAAAGTATTCAATACGATCCATTCCTTCAAGCTATTT
581 ATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-ATTT
* *
13702598 TTCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCCAAATTGTTTGTCATTTTGTAAACTA
1 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA
* * * * **
13702663 CTTTTGGTCTTTGAATTAAAAACTTA-TTAGGAGAGAATTGTATTTCTCTTCGTTC-T-AGGCT-
66 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGAGAATG
* * * *
13702724 GAACTTGTCAAACTTTTAGGAGTT-TTTTATAACTTCGATTCCTTAAAGTATTCACGATGATCTT
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCT
* * * * *
13702788 TTCCTTCGAGACATTTCCCGAACATTCCATGCTCGAGAAATCGTATAATTTGGTCTAAATATTTT
196 TTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * * * *
13702853 GCCATTTTGTAAACTACTATTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTACCTCTC
261 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAATTGTATCTCTC
* * * * *
13702918 TTGGTTCTTGGACGAACTTGTCAAACTTTTATGAGCTCTTTTATAACATCGATTCCTCAAAGTAT
326 TTGGTTCTAGGATGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTAT
* * * * *
13702983 TCAAGACGATCCTTTCCTTCGAGACATTTCCCGAACATTCCTTGCCCGGGAAGTCGCATCATTTG
391 TCAAGACGATCATTTCCTTCGAGA-ATTTTCCGAACATTCCATGCTCGAGAAGTCGCATCATTTG
* * * * * *
13703048 GTCCAAATT-GTTTGTCATTTTGTAAACAAGTTTTTGTATTTGGATTAAAAACTTATTTACGTGA
455 GT-CAAATTAGTTTGTCATTTTGTAAACCACTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * *
13703112 GAATAT-AATCTCTCTTAGTTCTTTGATGAACTTCCGAACTTGTCAAACTTTTACGAGATCTTTT
519 GAAT-TGTATCTCTCTTAGTTCTTTGA-GAACTT-TGAACTTGTCAAACTTTTACGAGTTCTTTT
** *
13703176 ATAACTTCGGTTCCTTAAAGTATTCAAGGTGATCCATTCTTTCGAGCAATTT
581 ATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-ATTT
** * * * * * *
13703228 TTCGAGTATTCCAGGCTCGAGAAATTGTATCATTTGGTTCAAATAGGTTGTCA-TTT-T-AACCA
1 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA
* * *
13703290 GCTTTTGGTGTTTGAATTAATAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGA
66 -CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTT-GA-GA
** * * *
13703355 ACTTTGGAACTTGTCAAACTTTTTTGAGTTCATTTATAGCTTC-AGTTCCTTAAAGTATTCAAGG
128 A---TGGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGA
* * * *
13703419 CGATACTTTCCTTCGAGGCATTTCCCGAACATTCCATGCTTGGGAAGTCGCATCATTTGGTCCAA
189 CGATCCTTTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAA
* * * * *
13703484 ATTGTTTGTCATTTTGCAAACAAC-TTTGGTCTTGGAATTAAAAACTTATTTACGTGAGAAT
254 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAAT
13703545 ATAATCTCTC
Statistics
Matches: 2380, Mismatches: 354, Indels: 231
0.80 0.12 0.08
Matches are distributed among these distances:
624 12 0.01
625 86 0.04
626 19 0.01
627 38 0.02
628 224 0.09
629 306 0.13
630 496 0.21
631 78 0.03
632 10 0.00
633 54 0.02
634 4 0.00
635 6 0.00
636 55 0.02
637 72 0.03
638 294 0.12
639 187 0.08
640 45 0.02
641 52 0.02
642 38 0.02
643 21 0.01
644 92 0.04
645 9 0.00
646 73 0.03
647 106 0.04
648 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (630 bp):
TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACTA
CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGAGAATG
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCT
TTCCTTCGAGACATTTCCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGAGAGAATTGTATCTCTC
TTGGTTCTAGGATGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTAT
TCAAGACGATCATTTCCTTCGAGAATTTTCCGAACATTCCATGCTCGAGAAGTCGCATCATTTGG
TCAAATTAGTTTGTCATTTTGTAAACCACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGA
ATTGTATCTCTCTTAGTTCTTTGAGAACTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTT
Done.