Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 59 of 120
Found at i:17553178 original size:31 final size:31
Alignment explanation
Indices: 17553140--17553201 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
17553130 AAATAAAATA
17553140 CAACAAATAATGAAATGTATAGTTCGAAACT
1 CAACAAATAATGAAATGTATAGTTCGAAACT
17553171 CAACAAATAATGAAATGTATAGTTCGAAACT
1 CAACAAATAATGAAATGTATAGTTCGAAACT
17553202 TATTAATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (31 bp):
CAACAAATAATGAAATGTATAGTTCGAAACT
Found at i:17558744 original size:16 final size:15
Alignment explanation
Indices: 17558725--17558759 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
17558715 ATAAAAATAT
17558725 ATATATTTTTT-AAA
1 ATATATTTTTTAAAA
17558739 ATATATTTTTTAAAA
1 ATATATTTTTTAAAA
17558754 AT-TATT
1 ATATATT
17558760 GAAACATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATATTTTTTAAAA
Found at i:17558759 original size:14 final size:14
Alignment explanation
Indices: 17558725--17558753 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
17558715 ATAAAAATAT
17558725 ATATATTTTTTAAA
1 ATATATTTTTTAAA
17558739 ATATATTTTTTAAA
1 ATATATTTTTTAAA
17558753 A
1 A
17558754 ATTATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATATTTTTTAAA
Found at i:17559933 original size:307 final size:308
Alignment explanation
Indices: 17559345--17559944 Score: 985
Period size: 307 Copynumber: 2.0 Consensus size: 308
17559335 ATGATTCTTG
17559345 TTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAAAAGTTATTCCTAAAAGT
1 TTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAAAAGTTATTCCTAAAAGT
*
17559410 GCCTCCTTATACTACGGTTTCAAATTAATAAAAAAATATTTTTTTCTAAAATAGTTGGTTAGGGG
66 GCCTCCTTATACTACGGTTTCAAATTAATAAAAAAATATTTTTTTCTAAAATAGTTGGTTAGGAG
* *
17559475 GCGGTCAGACCCTTACCCAGTAGTTAATTGAAACATCCATTGCGTAAAAAAATTCAAATTTTAAA
131 GCAGTCAGACCCTTACCCAGTAGTTAATTGAAACATCCATTGCGCAAAAAAATTCAAATTTTAAA
* *
17559540 AGTTTTTATTCGACCTACTTCCTTCAGTCCATCAAACTCAGTCCCCAACAAAATCACGTCACATG
196 AGTTTTTATTCGACCTACTTCCTTCAGTCCAACAAACCCAGTCCCCAACAAAATCACGTCACATG
* *
17559605 ACATTTTAATAAATTATTTTTTTCCGTAATTGAAAATGATTTTTTTAT
261 ACACTTTAATAAATTATTTTTTTCCGAAATTGAAAATGATTTTTTTAT
*
17559653 TTATTTTGGAAAGGTCTCTTTATATGTCGGTTT-AAGATATACA-AAAAAGTTATTCCTAAAAGT
1 TTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAAAAGTTATTCCTAAAAGT
* * *
17559716 G-CTCCCTTATATTGCGGTTTCAAATTAATAAAAATATATTTTTTTCTAAAATAGCTTGGTTAGG
66 GCCT-CCTTATACTACGGTTTCAAATTAATAAAAAAATATTTTTTTCTAAAATAG-TTGGTTAGG
*
17559780 AGGCAGTCAGACCCTTATCCC-GTTA-TTAGTTGAAACATCCATTGCGCAAAAAAATTCAAATTT
129 AGGCAGTCAGACCCTTA-CCCAG-TAGTTAATTGAAACATCCATTGCGCAAAAAAATTCAAATTT
* * *
17559843 TAAAAGTTTTTATTTGACCTACTTCCTTCAGTCGAACAAGCCCAGTCCCCAACAAAATCACGTCA
192 TAAAAGTTTTTATTCGACCTACTTCCTTCAGTCCAACAAACCCAGTCCCCAACAAAATCACGTCA
*
17559908 CATGACACTTTAATAAATTATTTTTTTCTGAAATTGA
257 CATGACACTTTAATAAATTATTTTTTTCCGAAATTGA
17559945 CATTTAGGGG
Statistics
Matches: 272, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
305 2 0.01
306 68 0.25
307 165 0.61
308 37 0.14
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (308 bp):
TTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAAAAGTTATTCCTAAAAGT
GCCTCCTTATACTACGGTTTCAAATTAATAAAAAAATATTTTTTTCTAAAATAGTTGGTTAGGAG
GCAGTCAGACCCTTACCCAGTAGTTAATTGAAACATCCATTGCGCAAAAAAATTCAAATTTTAAA
AGTTTTTATTCGACCTACTTCCTTCAGTCCAACAAACCCAGTCCCCAACAAAATCACGTCACATG
ACACTTTAATAAATTATTTTTTTCCGAAATTGAAAATGATTTTTTTAT
Found at i:17561629 original size:852 final size:844
Alignment explanation
Indices: 17559686--17561824 Score: 2746
Period size: 852 Copynumber: 2.5 Consensus size: 844
17559676 ATGTCGGTTT
* * *
17559686 AAGATATACAAAAAAGTTATTCCTAAAAGTGCTCCCTTATATTGCGGTTTCAAATTAATAAAAAT
1 AAGATATAAAAAAAAGTTATTTCTAAAAGTG-TCCCTTATATCGCGGTTTCAAATTAATAAAAAT
* * * * * *
17559751 ATATTTTTTTCTAAAATAGCTTGGTT-AGGAGGCAGTCAGACCCTTATCCCGTTA-T-T-AGTTG
65 ATTTTTTTTTCTAAAATAACTTGGTTAAGGA-CCAGCCAGACCCTTA--CC-TAACTGTCAATTG
* *
17559812 AAACATCCATTGCGCAAAAAAATTCAAATTTTAAAAGTTTTTATTTGACCTACTTCCTTCAGTCG
126 AAACATCCATTGCGCAAAAAAATTCAAATTTT-AAAGTTTTTATTCGATCTACTTCCTTCAGTC-
* * * *
17559877 AACAAGCCCAGTCCCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGAAAT
189 ATCAAACCCAGTCCCCAACAACATCACATCACATGACACTTTAATAAATTATTTTTTTCTGAAAT
* *
17559942 TGACATTTAGG-GGCGGTTTCAAACTCAAAGATTCTAAAATTAAAAATAAAATTACAAAAGTA-C
254 TGACATTTAGGTGGCGGTTTCAAACTCAAAGATTCT-AAATTGAAAATAAAATTACGAAAGTACC
* * * *
17560005 CAATGTAATCTATATGACTCCCTCCTCCATTTCCCCCACATAAATATTCTCACAATTTCTTCTCT
318 CAATGTAATCTATATGACTCCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTTTTCTCT
* * * * *
17560070 ATTTAAACTACTCTCTTTTTTATTGAAGTAAGTTTGTTTTTCTTAGTTTATTTTTAAATGTCTTT
383 ATTTAAACTACTCTCTATTTTATTGAAGTAAGTTTGCTTTTCTTAGTTT-TTTTTAAATATATAT
* *
17560135 TTTTAATTTAGTTAATTTTCACTATTAAAAGCGATAGTGTTATTTGTATCCAATTGTTATATTTT
447 TTTTAATTTAGTTAATTTTCACTATTAAAAGCGATAATGTTATTTGTATCCAATTGTTAAATTTT
* * *
17560200 TAAATATTTTTTCTCAATGTGCAGATTGGTAGGAGACCATGGATTGTAAATTCAATGTTGTGACC
512 TAAATATTTTTTCTCAATGTGCAGATTGGTAGGAGAACATGGATTGTAAACTCAATGTTGAGACC
* * *
17560265 CATTATAATGGACAAACTCACTATATAAAAGATAGATCAATTTGAATGATAGTAAATAAAAGTAG
577 CATTACAATGGACAAACTCACTATATAAAAGA-ACATCAATTAGAATGATAGTAAATAAAAGTAG
* * * *
17560330 AGGGACCTAATCCGCACAAATCAATAAGTACAAGAACTATTCTTAGAATTTAGTCAAAAATAATT
641 AGGGACCAAATCCGCACAAATCAATAAGTACAAGAACTATTATTAGAATTTAATCAAAAATAATA
* *
17560395 TTTGTTTCACTTGACAATGACACACGACGTTCTTGATATAAAAAATAAATTTTTTATTTTAAAAC
706 TTTGTTTCACTTGACAATGACACACGACATTCTTGATATAAAAAATAAATTATTTATTTTAAAAC
** *
17560460 CGCCATCTTATGCGGCGGTTTCAAAATATAAAATAATTTTTTAATTTGGAAGTGTATCTATAAAT
771 CGCCATCTTATGCGGCAATTTCAAAATATAAAATAATTTTTTAATTTGAAAGTGTATCTATAAAT
*
17560525 GGCGGTCCC
836 GGCAGTCCC
* * *
17560534 AAGATATATAAAAAAAAAGTTATTTCTAAAAGTGCCCCTTATATCGCGGTTTCAAAATAAGAAAA
1 AAG--ATAT-AAAAAAAAGTTATTTCTAAAAGTGTCCCTTATATCGCGGTTTCAAATTAATAAAA
* * * * * *** * *
17560599 ATA-TATTTTTTCTTAAGTAACTGGGTTAGTGGGTGA-CCAGACCCTTACCCAGCTGTCAATTGA
63 ATATTTTTTTTTCTAAAATAACTTGGTTA-AGGACCAGCCAGACCCTTACCTAACTGTCAATTGA
* * *
17560662 AACATCCATTGCACAAAAAAAATTCAAAATTTAAATGTTTTTATTCAATCTAC-TCCATTCAGTC
127 AACATCCATTGCGC-AAAAAAATTCAAATTTTAAA-GTTTTTATTCGATCTACTTCC-TTCAGT-
*
17560726 CATCAAACCCAGTCCCCAACAACATCACATCATATGACACTTTAATAAATTATTTTTTTTCTGAA
188 CATCAAACCCAGTCCCCAACAACATCACATCACATGACACTTTAATAAATTA-TTTTTTTCTGAA
* ** *
17560791 ATTGACATGTTAGGTGGCGGTTTTAAACTCCGAGATTCTAAACTTGAAAATAAAATTATGAAAGT
252 ATTGACAT-TTAGGTGGCGGTTTCAAACTCAAAGATTCTAAA-TTGAAAATAAAATTACGAAAGT
* * * *
17560856 ACCCAATGTAACCTATATGACTTCCACCTCTATTTCTCCTACAAAAATATTCTCACAATTTTTTC
315 ACCCAATGTAATCTATATGACTCCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTTTTC
* *
17560921 TCTATTTAAACTACTCTCTATTTTATTGAACTAAGTTTGCTTTTCTTGGTTTTTTTTCAAATATA
380 TCTATTTAAACTACTCTCTATTTTATTGAAGTAAGTTTGCTTTTCTTAGTTTTTTTT-AAATATA
* * *
17560986 TATTTTTAATTTAGTTATTTTTCACTATCT-AAGGCGATAATGTTATTTGTATGCAATTGTTAAA
444 TATTTTTAATTTAGTTAATTTTCACTAT-TAAAAGCGATAATGTTATTTGTATCCAATTGTTAAA
** * * *
17561050 TTTCTT-GTTATTTTTTCTGAATGTGCAGGTCT-GTAGGAGAAGATGGATTGTAAACTCAATGTT
508 TTT-TTAAATATTTTTTCTCAATGTGCAGAT-TGGTAGGAGAACATGGATTGTAAACTCAATGTT
* * * * * *
17561113 GAGGCCCATTACAATGGACAAACTCACTATGTCAAAG-ACATCACTTAGAGTGCTAGTAAATAAA
571 GAGACCCATTACAATGGACAAACTCACTATATAAAAGAACATCAATTAGAATGATAGTAAATAAA
* * *
17561177 AGTAGAGGGACCAAATTCGCACAAGTCAATAAGTACAAGGACTATTATTAGAATTTAATCAAAAA
636 AGTAGAGGGACCAAATCCGCACAAATCAATAAGTACAAGAACTATTATTAGAATTTAATCAAAAA
* **
17561242 TAATATTTGTTTTACTTGACAATGACACGTGACATTCTTGATAT-AAAAATAATAATTATTTATT
701 TAATATTTGTTTCACTTGACAATGACACACGACATTCTTGATATAAAAAAT-A-AATTATTTATT
* * * * * * *
17561306 TTAAAACTGCCATCTT-TCGTGGTAATTTCAAGATATAAAATAATTTTTTATTTTTAAAGTGTCT
764 TTAAAACCGCCATCTTAT-GCGGCAATTTCAAAATATAAAATAATTTTTTAATTTGAAAGTGTAT
* ** *
17561370 CTTTACTTGGCAGTTCC
828 CTATAAATGGCAGTCCC
* *
17561387 AAGATATAAAGAAAAAGTTGTTTCTAAAATTGTCCTCTTATATCGCGGTTTCAAATTAATAAAAA
1 AAGATATAAA-AAAAAGTTATTTCTAAAAGTGTCC-CTTATATCGCGGTTTCAAATTAATAAAAA
*
17561452 TATTTTTTTTTCTAAAATAACTTGGTTAAGGACCAGCCAGACCCTTACCTAACTGTCAATTGATA
64 TATTTTTTTTTCTAAAATAACTTGGTTAAGGACCAGCCAGACCCTTACCTAACTGTCAATTGAAA
* *
17561517 CTTCTATTGCGCAAAAAAATTCAAATTTTAATAGTTTTTATTCGATCTACTTCCTTCAGTACATC
129 CATCCATTGCGCAAAAAAATTCAAATTTTAA-AGTTTTTATTCGATCTACTTCCTTCAGT-CATC
* * * * *
17561582 AAACCAAGTCCTCAACAACATCACATCAGATGACACTTTTATAAATTATTTTTTTCTAAAATTGA
192 AAACCCAGTCCCCAACAACATCACATCACATGACACTTTAATAAATTATTTTTTTCTGAAATTGA
* * *
17561647 CATATTAGGTGGAGGTTTCAAACTCTAAGATTCTAGAATTGAAAATAAAAATACGAAAGTACCCA
257 CAT-TTAGGTGGCGGTTTCAAACTCAAAGATTCTA-AATTGAAAATAAAATTACGAAAGTACCCA
*
17561712 ATGTAATCTATATGAC-CGCCACCTCCATTTTTCCCACAAAAATATTCTCAC-ATTTTCTTCTCT
320 ATGTAATCTATATGACTC-CCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTT-TTCTCT
* * * * *
17561775 ATTTAAGCCACTTTCCATTTTGTTGAAGTAAGTTTGCTTTTCTTAGTTTT
383 ATTTAAACTACTCTCTATTTTATTGAAGTAAGTTTGCTTTTCTTAGTTTT
17561825 GGCCCATACA
Statistics
Matches: 1111, Mismatches: 147, Indels: 63
0.84 0.11 0.05
Matches are distributed among these distances:
847 3 0.00
848 4 0.00
849 52 0.05
850 125 0.11
851 241 0.22
852 252 0.23
853 183 0.16
854 247 0.22
855 4 0.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (844 bp):
AAGATATAAAAAAAAGTTATTTCTAAAAGTGTCCCTTATATCGCGGTTTCAAATTAATAAAAATA
TTTTTTTTTCTAAAATAACTTGGTTAAGGACCAGCCAGACCCTTACCTAACTGTCAATTGAAACA
TCCATTGCGCAAAAAAATTCAAATTTTAAAGTTTTTATTCGATCTACTTCCTTCAGTCATCAAAC
CCAGTCCCCAACAACATCACATCACATGACACTTTAATAAATTATTTTTTTCTGAAATTGACATT
TAGGTGGCGGTTTCAAACTCAAAGATTCTAAATTGAAAATAAAATTACGAAAGTACCCAATGTAA
TCTATATGACTCCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTTTTCTCTATTTAAAC
TACTCTCTATTTTATTGAAGTAAGTTTGCTTTTCTTAGTTTTTTTTAAATATATATTTTTAATTT
AGTTAATTTTCACTATTAAAAGCGATAATGTTATTTGTATCCAATTGTTAAATTTTTAAATATTT
TTTCTCAATGTGCAGATTGGTAGGAGAACATGGATTGTAAACTCAATGTTGAGACCCATTACAAT
GGACAAACTCACTATATAAAAGAACATCAATTAGAATGATAGTAAATAAAAGTAGAGGGACCAAA
TCCGCACAAATCAATAAGTACAAGAACTATTATTAGAATTTAATCAAAAATAATATTTGTTTCAC
TTGACAATGACACACGACATTCTTGATATAAAAAATAAATTATTTATTTTAAAACCGCCATCTTA
TGCGGCAATTTCAAAATATAAAATAATTTTTTAATTTGAAAGTGTATCTATAAATGGCAGTCCC
Found at i:17563018 original size:19 final size:19
Alignment explanation
Indices: 17562994--17563032 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17562984 TAGTGAGCGG
17562994 TGTGTCCCTTACTCAACTA
1 TGTGTCCCTTACTCAACTA
17563013 TGTGTCCCTTACTCAACTA
1 TGTGTCCCTTACTCAACTA
17563032 T
1 T
17563033 CAATTGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.31, G:0.10, T:0.38
Consensus pattern (19 bp):
TGTGTCCCTTACTCAACTA
Found at i:17567772 original size:45 final size:48
Alignment explanation
Indices: 17567721--17567819 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 48
17567711 GGCTTTCTTG
*
17567721 GTTTT-AA-AATA-ATATATATATTTTAAAACTTCCATATTACGTGGC
1 GTTTTAAATAATATATATATATATTTTAAAACTGCCATATTACGTGGC
*
17567766 GTTTTAAAATAATATATATATATATTTTAAAACTGCCATATTATGTGGC
1 GTTTT-AAATAATATATATATATATTTTAAAACTGCCATATTACGTGGC
17567815 GTTTT
1 GTTTT
17567820 CAAGATATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
45 5 0.10
47 2 0.04
48 4 0.08
49 37 0.77
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.44
Consensus pattern (48 bp):
GTTTTAAATAATATATATATATATTTTAAAACTGCCATATTACGTGGC
Found at i:17570745 original size:29 final size:29
Alignment explanation
Indices: 17570713--17571067 Score: 140
Period size: 30 Copynumber: 12.1 Consensus size: 29
17570703 AAAACGGGAC
* *
17570713 TTTTGGATACTCGGGGGAAAAATGGTAAT
1 TTTTGGAAAATCGGGGGAAAAATGGTAAT
* *
17570742 TTTTGGTGAAATCGGGGTTAAAAATGG-AA-
1 TTTTGG-AAAATCGGGG-GAAAAATGGTAAT
* * * *
17570771 TTTTGGAAAGTTCAGGGGTAAAATGGTGAT
1 TTTTGGAAA-ATCGGGGGAAAAATGGTAAT
* *
17570801 TTTAGTG-AAATCGGGGTTAAAAATGG-AA-
1 TTTTG-GAAAATCGGGG-GAAAAATGGTAAT
* *
17570829 TTTTGGAAAATTCAGGGGTAAAATGGTAAT
1 TTTTGGAAAA-TCGGGGGAAAAATGGTAAT
* **
17570859 TTTTGGTGAAATCGGGATTAAAAATGG-AA-
1 TTTTGG-AAAATCGGG-GGAAAAATGGTAAT
* ** ** *
17570888 TTTTAGAAGGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAA-AATCGGGGGAAAAATGGTAAT
** * **
17570918 TTTT-GATGAAATTTGAGTTAAAATGG-AAT
1 TTTTGGA--AAATCGGGGGAAAAATGGTAAT
* ** *
17570947 TTTTAGAAGTTCGGGGGTAAAATGGTAAT
1 TTTTGGAAAATCGGGGGAAAAATGGTAAT
* *
17570976 TTTTGGTGAAATCGGGGTTAAAAATGG-AA-
1 TTTTGG-AAAATCGGGG-GAAAAATGGTAAT
** * *
17571005 TTTTGGAAAATTTAGGGGTAAGATGGTAAT
1 TTTTGGAAAA-TCGGGGGAAAAATGGTAAT
* *
17571035 TTTTGGTGAAATCGGGGCTAAAAATGG-AAT
1 TTTTGG-AAAATCGGGG-GAAAAATGGTAAT
17571065 TTT
1 TTT
17571068 AAAAGGTTCG
Statistics
Matches: 236, Mismatches: 63, Indels: 53
0.67 0.18 0.15
Matches are distributed among these distances:
27 1 0.00
28 52 0.22
29 70 0.30
30 77 0.33
31 36 0.15
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (29 bp):
TTTTGGAAAATCGGGGGAAAAATGGTAAT
Found at i:17570815 original size:58 final size:59
Alignment explanation
Indices: 17570726--17571098 Score: 504
Period size: 59 Copynumber: 6.4 Consensus size: 59
17570716 TGGATACTCG
*
17570726 GGGGAAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
* * *
17570785 GGGGTAAAATGGTGA-TTTTAGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTCA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
* * * *
17570843 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGATTAAAAATGGAATTTTAGAAGGTTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
* ** * * *
17570902 GGGGTAAAATGGTAATTTTTGATGAAATTTGAGTT-AAAATGGAATTTT-TAGAAGTTCG
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGA-AAGTTCA
* *
17570960 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
* * *
17571019 GGGGTAAGATGGTAATTTTTGGTGAAATCGGGGCTAAAAATGGAATTTT-AAAAGGTTC-
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAA-GTTCA
* *
17571077 GGGATAAAATGGTAAATTTTGG
1 GGGGTAAAATGGTAATTTTTGG
17571099 AAGTTTCTAG
Statistics
Matches: 273, Mismatches: 36, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
57 1 0.00
58 125 0.46
59 146 0.53
60 1 0.00
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCA
Found at i:17570905 original size:117 final size:114
Alignment explanation
Indices: 17570726--17571098 Score: 496
Period size: 117 Copynumber: 3.2 Consensus size: 114
17570716 TGGATACTCG
* *
17570726 GGGGAAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTA
*
17570791 AAATGGTGATTTTAGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTC
66 AAATGGTAATTTTAGTGAAATCGGGGTTAAAAATGGAATTTT--AAAATTC
* * *
17570842 AGGGGTAAAATGGTAATTTTTGGTGAAATCGGGATTAAAAATGGAATTTTAGAAGGTTTAGGGGT
1 -GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* ** * *
17570907 AAAATGGTAATTTTTGATGAAATTTGAGTT-AAAATGGAATTTTTAGAAGTTC
65 AAAATGGTAATTTTAG-TGAAATCGGGGTTAAAAATGGAA-TTTTA-AAATTC
*
17570959 GGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTTAGGGGT
1 -GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* * *
17571024 AAGATGGTAATTTTTGGTGAAATCGGGGCTAAAAATGGAATTTTAAAAGGTTC
65 AAAATGGTAA-TTTTAGTGAAATCGGGGTTAAAAATGGAATTTTAAAA--TTC
* *
17571077 GGGATAAAATGGTAAATTTTGG
1 GGGGTAAAATGGTAATTTTTGG
17571099 AAGTTTCTAG
Statistics
Matches: 224, Mismatches: 25, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
116 3 0.01
117 190 0.85
118 31 0.14
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (114 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTA
AAATGGTAATTTTAGTGAAATCGGGGTTAAAAATGGAATTTTAAAATTC
Found at i:17571414 original size:162 final size:162
Alignment explanation
Indices: 17571225--17571566 Score: 531
Period size: 162 Copynumber: 2.1 Consensus size: 162
17571215 AGGCATCCAG
* * * *
17571225 CAGTCAAGGGATTAAATTGTAAACCTTGAAAAATTCTCGGGCCAATTTTATAATTAAATAAAGGT
1 CAGTCAAAGGACTAAATTATAAACCTTGAAAAATTCTCGGGCCAATTTTATAATTAAATAAAAGT
* * *
17571290 TGATTTAAGGATTAAATTAAAACAAATTAAAAATGTAAGGGACCAAATGTACCAATAAACCAAAG
66 TGATTTAAGGATTAAATTAAAACAAATTAAAAATGTAAGGGACCAAATGCACAAATAAACCAAAA
*
17571355 AGTGACACGTGGCAGCCTCTGGTGCAGTCAAA
131 AGTGACACGTGGCAACCTCTGGTGCAGTCAAA
* * * *
17571387 CAGTCAATGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGT
1 CAGTCAAAGGACTAAATTATAAACCTTGAAAAATTCTCGGGCCAATTTTATAATTAAATAAAAGT
* * * *
17571452 TGATTTAGGGATTAAATTAAAATAAATTAAAAATGTAAGGGACCAAATGCAGAAATAAGCCAAAA
66 TGATTTAAGGATTAAATTAAAACAAATTAAAAATGTAAGGGACCAAATGCACAAATAAACCAAAA
*
17571517 AGTGACACGTGGCAACTTCTGGTGCAGTCAAA
131 AGTGACACGTGGCAACCTCTGGTGCAGTCAAA
17571549 CAGTCAAAGGACTAAATT
1 CAGTCAAAGGACTAAATT
17571567 GAAAACTAAT
Statistics
Matches: 162, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
162 162 1.00
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (162 bp):
CAGTCAAAGGACTAAATTATAAACCTTGAAAAATTCTCGGGCCAATTTTATAATTAAATAAAAGT
TGATTTAAGGATTAAATTAAAACAAATTAAAAATGTAAGGGACCAAATGCACAAATAAACCAAAA
AGTGACACGTGGCAACCTCTGGTGCAGTCAAA
Found at i:17572002 original size:12 final size:11
Alignment explanation
Indices: 17571985--17572029 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
17571975 CAAGGTAGTA
17571985 TTTCTTCTCTTT
1 TTTCTT-TCTTT
*
17571997 TTTCTTCCTTT
1 TTTCTTTCTTT
17572008 TTGT-TTTCTTT
1 TT-TCTTTCTTT
17572019 TTTCTTTCTTT
1 TTTCTTTCTTT
17572030 ATTGTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 1 0.03
11 21 0.72
12 7 0.24
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTCTTTCTTT
Found at i:17572019 original size:22 final size:23
Alignment explanation
Indices: 17571992--17572035 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
17571982 GTATTTCTTC
17571992 TCTTTTTTCTTCCTTT-TTGTTT
1 TCTTTTTTCTTCCTTTATTGTTT
*
17572014 TCTTTTTTCTTTCTTTATTGTT
1 TCTTTTTTCTTCCTTTATTGTT
17572036 AAAACAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (23 bp):
TCTTTTTTCTTCCTTTATTGTTT
Found at i:17572295 original size:3 final size:3
Alignment explanation
Indices: 17572289--17572335 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
17572279 TTATCTTCTT
* *
17572289 TTA TTA TTA TTA TTA ATA TTTA TTA TTA TTA ATA TTA -TA TTTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA -TTA TTA
17572335 T
1 T
17572336 AAAACCCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 31 0.84
4 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:17572366 original size:19 final size:18
Alignment explanation
Indices: 17572289--17572372 Score: 68
Period size: 16 Copynumber: 4.5 Consensus size: 18
17572279 TTATCTTCTT
17572289 TTATTATTATTATTAATA
1 TTATTATTATTATTAATA
17572307 -T-TTATTATTATTAATA
1 TTATTATTATTATTAATA
*
17572323 TTA-TATTTATTA-TAAAA
1 TTATTA-TTATTATTAATA
17572340 CCCTTTATTAATTATTATTAATA
1 ----TTATT-ATTATTATTAATA
17572363 TTATTTATTA
1 TTA-TTATTA
17572373 CTGCTAACAT
Statistics
Matches: 53, Mismatches: 2, Indels: 21
0.70 0.03 0.28
Matches are distributed among these distances:
16 15 0.28
17 8 0.15
18 6 0.11
19 7 0.13
20 2 0.04
21 3 0.06
22 7 0.13
23 5 0.09
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATTATTATTATTAATA
Found at i:17573084 original size:17 final size:16
Alignment explanation
Indices: 17573062--17573112 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
17573052 CCAAATTTAT
17573062 CAAATTTAAATTTAACA
1 CAAATTTAAATTTAA-A
*
17573079 CAAATTTAAGTTTAAA
1 CAAATTTAAATTTAAA
*
17573095 AATTAATTTAAATTTAAA
1 CA--AATTTAAATTTAAA
17573113 TTTTAAGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 2 0.07
17 14 0.48
18 13 0.45
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (16 bp):
CAAATTTAAATTTAAA
Found at i:17573118 original size:18 final size:18
Alignment explanation
Indices: 17573064--17573112 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
17573054 AAATTTATCA
*
17573064 AATTTAAATTTAACACA--
1 AATTTAAATTTAA-AAATT
*
17573081 AATTTAAGTTTAAAAATT
1 AATTTAAATTTAAAAATT
17573099 AATTTAAATTTAAA
1 AATTTAAATTTAAA
17573113 TTTTAAGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 2 0.07
17 12 0.44
18 13 0.48
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (18 bp):
AATTTAAATTTAAAAATT
Found at i:17578020 original size:16 final size:16
Alignment explanation
Indices: 17577984--17578022 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
17577974 CATTTAAATT
* *
17577984 CCAGATACAGAGCATA
1 CCAGATACAGAACAGA
17578000 CCAGATACAGAACAGA
1 CCAGATACAGAACAGA
*
17578016 TCAGATA
1 CCAGATA
17578023 AGATACAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.23, G:0.18, T:0.13
Consensus pattern (16 bp):
CCAGATACAGAACAGA
Found at i:17578029 original size:336 final size:337
Alignment explanation
Indices: 17577249--17578257 Score: 1608
Period size: 336 Copynumber: 3.0 Consensus size: 337
17577239 TCGAATTCAA
* *
17577249 TATCATTTTCAGATATCACTTATTCAAATTTAACAGATCAGATATGGTGAATCATTTAAATTCCA
1 TATCATTTTTAGATATCACTTATTCAAATTTAATAGATCAGATATGGTGAATCATTTAAATTCCA
* * * * * *
17577314 AATACAAAGCATATTAGATACAGAATAGATCAAATATAGATAAAAATGCAATTTTCTTACCTCCA
66 GATACAAAGCATATCAGATACAGAACAGATCAGATATAGATACAAATGCAATTTTCTTACCCCCA
* *
17577379 TCCGCTACACACCATCTCCGCCCATACCAACACACCATATAGGTAATTGATACCCATCCAACCCT
131 TCCGCTACACACCATCTCCGTCCATACCAACACACCATATAGGTATTTGATACCCATCCAACCCT
*
17577444 ACACATCACATAGTGTCGATATGACACAGTTCAG-AATTGTAGTCTAGCTGCCAAATTAGATTAC
196 ACACATCACATAGTGTCGGTATGACACAGTTCAGTAATTGTAGTCTAGCTGCCAAATTAGATTAC
* * * * *
17577508 GGATATTGGTAGCTTAACCACTAATACAAAATAGAACACTTCCTTCTTTACATACTTCTAACCCC
261 GGATATTGGTGGCTTAGCCACTAATACAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
17577573 ATGCAAATGCAG
326 ATGCAAATGCAG
* ** * *
17577585 TATCATTATTAGATATCACTTATTCAAATTTAATAGCCCAGATATGGTGAATAATTTAAATTCTA
1 TATCATTTTTAGATATCACTTATTCAAATTTAATAGATCAGATATGGTGAATCATTTAAATTCCA
* *
17577650 GATACAAAGCAGATCAAATACAGAACAGATCAGATATAGATACAAATGCAATTTTCTTACCCCCA
66 GATACAAAGCATATCAGATACAGAACAGATCAGATATAGATACAAATGCAATTTTCTTACCCCCA
*
17577715 TCCGCTACACACCATCTCCGTCCATACCAACACACCATATAGGTATTTGATACCCATTCAACCCT
131 TCCGCTACACACCATCTCCGTCCATACCAACACACCATATAGGTATTTGATACCCATCCAACCCT
*
17577780 ATACATCACATAGTGTCGGTATGACACAGTTCAGTAATTGTAGTCTAGCTGCCAAATTAGATTAC
196 ACACATCACATAGTGTCGGTATGACACAGTTCAGTAATTGTAGTCTAGCTGCCAAATTAGATTAC
17577845 GGATATTGGTGGCTTAGCCACTAATACAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
261 GGATATTGGTGGCTTAGCCACTAATACAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
*
17577910 ATACAAATGCAG
326 ATGCAAATGCAG
* *
17577922 TATCATTTTTAGATATCACATATTCAAATTTAGTAGATCAGATATGGTGAATCATTTAAATTCCA
1 TATCATTTTTAGATATCACTTATTCAAATTTAATAGATCAGATATGGTGAATCATTTAAATTCCA
* * * *
17577987 GATACAGAGCATACCAGATACAGAACAGATCAGATA-AGATACAAATGCAATTTTCTTATCCCTA
66 GATACAAAGCATATCAGATACAGAACAGATCAGATATAGATACAAATGCAATTTTCTTACCCCCA
* * *
17578051 TCCGCTACACACTATCTACGTCCATACCAACACACTATATAGGTATTTGATACCCATCCAACCCT
131 TCCGCTACACACCATCTCCGTCCATACCAACACACCATATAGGTATTTGATACCCATCCAACCCT
* * * * * *
17578116 ACATATCACATAGTATCAGTATGATACAGTTCAATAATTGTAGTCCAGCTGCCAAATTAGATTAC
196 ACACATCACATAGTGTCGGTATGACACAGTTCAGTAATTGTAGTCTAGCTGCCAAATTAGATTAC
** *
17578181 AAATATTGGTGGCTTAGCCACTAATATAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
261 GGATATTGGTGGCTTAGCCACTAATACAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
17578246 ATGCAAATGCAG
326 ATGCAAATGCAG
17578258 AATTCAGATA
Statistics
Matches: 618, Mismatches: 54, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
336 427 0.69
337 191 0.31
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (337 bp):
TATCATTTTTAGATATCACTTATTCAAATTTAATAGATCAGATATGGTGAATCATTTAAATTCCA
GATACAAAGCATATCAGATACAGAACAGATCAGATATAGATACAAATGCAATTTTCTTACCCCCA
TCCGCTACACACCATCTCCGTCCATACCAACACACCATATAGGTATTTGATACCCATCCAACCCT
ACACATCACATAGTGTCGGTATGACACAGTTCAGTAATTGTAGTCTAGCTGCCAAATTAGATTAC
GGATATTGGTGGCTTAGCCACTAATACAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCC
ATGCAAATGCAG
Found at i:17583980 original size:442 final size:438
Alignment explanation
Indices: 17583148--17584012 Score: 1450
Period size: 442 Copynumber: 2.0 Consensus size: 438
17583138 TCCATTTCTT
17583148 CCACAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTA
1 CCACAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTA
* *
17583213 TTTTTTAGTTTTTTAAATATTTTTTAATTTAGTTAATTTTTACTATCTAACGCGTAATGTTATTT
66 TTTTTTAGTATTTTAAATATTTTTTAATTTAGTTAACTTTTACTATCTAACGCGTAATGTTATTT
17583278 GTATGCAACTGCTATATTTTTTGTTATTTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGAT
131 GTATGCAACTGCTATATTTTTTGTTATTTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGAT
* * * * * *
17583343 CGTAAATTCAATGTTGTGGCCCATTACAAGGAACAAACTCACTATATCAAAGACATCAATTTGAA
196 CATAAATTCAATATTATGGCCAATTACAAGGAACAAACTCACTATATCAAAGACACCAATTTAAA
* *
17583408 TGGTAGTAAATAAAAGTGGAGGGACCAAATCCGCACAAATCAAAAAGTACAAGGACTATTCTTAG
261 TGGCAGTAAATAAAAGTGGAGGGACCAAATCCACACAAATCAAAAAGTACAAGGACTATTCTTAG
* *
17583473 AAATTAAACAAAAATAATATTTATTTCACACGACTTTGTCACGTGGTTTTTTTATATAAAATAAT
326 AAATTAAAC-AAAATAATA-TTATTTCACACGACTCTGTCACGCGGTTTTTTTATATAAAATAAT
*
17583538 AATAAATTTTTATTTTAAAACTGTCATCTTACACGATGTAATGTTATTTTTC
389 -A-AAATTTTTATTTTAAAACTGCCATCTTACACGATGTAATGTTATTTTTC
17583590 CCACAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTA
1 CCACAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTA
17583655 TTTTTTAGTATTTTAAATATTTTTTTAATTTAGTTAACTTTTACTATCTAACGCGTAATGTTATT
66 TTTTTTAGTATTTTAAATA-TTTTTTAATTTAGTTAACTTTTACTATCTAACGCGTAATGTTATT
*
17583720 TGTATGCAACTGTTATATTTTTTGTTA-TTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGA
130 TGTATGCAACTGCTATATTTTTTGTTATTTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGA
*
17583784 TCATAAATTCAATATTATGGCCAATTACAAGGGACAAACTCACTATATCAAAGACACCAATTTAA
195 TCATAAATTCAATATTATGGCCAATTACAAGGAACAAACTCACTATATCAAAGACACCAATTTAA
*
17583849 ATGGCAGTAAATAAAAGTGGAGGGACCAAATCCACACAAATCAAAAAGTACAAGGATTATTCTTA
260 ATGGCAGTAAATAAAAGTGGAGGGACCAAATCCACACAAATCAAAAAGTACAAGGACTATTCTTA
* *
17583914 GAAATTAAAC-AAA-AATA-TGTTTCACTCGACTCTGTCACGCGGTTTTTTTTTATATAAAATAA
325 GAAATTAAACAAAATAATATTATTTCACACGACTCTGTCACGCGG--TTTTTTTATATAAAATAA
17583976 TAATAAATTTTTTATTTTAAAACTGCCATCTTACACG
388 T-A-AAA-TTTTTATTTTAAAACTGCCATCTTACACG
17584013 GCAGTTTCAA
Statistics
Matches: 401, Mismatches: 18, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
437 21 0.05
439 29 0.07
440 31 0.08
442 250 0.62
443 70 0.17
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (438 bp):
CCACAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTA
TTTTTTAGTATTTTAAATATTTTTTAATTTAGTTAACTTTTACTATCTAACGCGTAATGTTATTT
GTATGCAACTGCTATATTTTTTGTTATTTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGAT
CATAAATTCAATATTATGGCCAATTACAAGGAACAAACTCACTATATCAAAGACACCAATTTAAA
TGGCAGTAAATAAAAGTGGAGGGACCAAATCCACACAAATCAAAAAGTACAAGGACTATTCTTAG
AAATTAAACAAAATAATATTATTTCACACGACTCTGTCACGCGGTTTTTTTATATAAAATAATAA
AATTTTTATTTTAAAACTGCCATCTTACACGATGTAATGTTATTTTTC
Found at i:17585546 original size:11 final size:11
Alignment explanation
Indices: 17585524--17585616 Score: 53
Period size: 12 Copynumber: 8.0 Consensus size: 11
17585514 GTTTGGGTTT
17585524 TTAAAGTTTAAA
1 TTAAA-TTTAAA
*
17585536 TTAATTTTAAA
1 TTAAATTTAAA
**
17585547 TTTAAATTTATC
1 -TTAAATTTAAA
17585559 TTAAATTTAAA
1 TTAAATTTAAA
*
17585570 TTTACTTATTTAAA
1 -TTA--AATTTAAA
* * *
17585584 TTTATTTTAGAT
1 TTAAATTTA-AA
17585596 TTAAATTT-AA
1 TTAAATTTAAA
*
17585606 TCAAATTTAAA
1 TTAAATTTAAA
17585617 ATAATATTAA
Statistics
Matches: 60, Mismatches: 15, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
10 8 0.13
11 21 0.35
12 22 0.37
13 2 0.03
14 7 0.12
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:17585550 original size:6 final size:6
Alignment explanation
Indices: 17585523--17585605 Score: 66
Period size: 6 Copynumber: 13.8 Consensus size: 6
17585513 AGTTTGGGTT
*
17585523 TTTAAA GTTTAAA -TTAAT TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA
* * *
17585570 TTTACTTA TTTAAA TTT-AT TTTAGA TTTAAA TTTAA
1 TTTA--AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
17585606 TCAAATTTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
4 2 0.03
5 10 0.16
6 36 0.59
7 8 0.13
8 5 0.08
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:17585552 original size:17 final size:17
Alignment explanation
Indices: 17585522--17585604 Score: 100
Period size: 17 Copynumber: 5.0 Consensus size: 17
17585512 GAGTTTGGGT
*
17585522 TTTTAAAGTTTAAATTAA
1 TTTTAAA-TTTAAATTTA
17585540 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
17585557 TCTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
17585574 -CTT--ATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
17585588 TTTTAGATTTAAATTTA
1 TTTTAAATTTAAATTTA
17585605 ATCAAATTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
14 11 0.19
15 2 0.03
16 3 0.05
17 36 0.61
18 7 0.12
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:17585584 original size:31 final size:31
Alignment explanation
Indices: 17585546--17585604 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
17585536 TTAATTTTAA
17585546 ATTTAAATTTATCTTAAATTTAAATTTACTT
1 ATTTAAATTTATCTTAAATTTAAATTTACTT
* *
17585577 ATTTAAATTTATTTTAGATTTAAATTTA
1 ATTTAAATTTATCTTAAATTTAAATTTA
17585605 ATCAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (31 bp):
ATTTAAATTTATCTTAAATTTAAATTTACTT
Found at i:17586411 original size:13 final size:13
Alignment explanation
Indices: 17586393--17586430 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
17586383 TAATGACATT
*
17586393 AATATTACTAATA
1 AATATTAATAATA
*
17586406 AATATTATTAATA
1 AATATTAATAATA
17586419 AATATTAATAAT
1 AATATTAATAAT
17586431 TTAATAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
AATATTAATAATA
Found at i:17587209 original size:31 final size:32
Alignment explanation
Indices: 17587164--17587227 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
17587154 CAAGTATTGG
17587164 TTTATTTCTTCAA-TTAGTCC-TTTCGCATTT
1 TTTATTTCTTCAATTTAGTCCTTTTCGCATTT
* *
17587194 TTTATTTGTTTCAATTTAGTCCTTTTTGCATTT
1 TTTATTT-CTTCAATTTAGTCCTTTTCGCATTT
17587227 T
1 T
17587228 CTAATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.24
31 5 0.17
32 7 0.24
33 10 0.34
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (32 bp):
TTTATTTCTTCAATTTAGTCCTTTTCGCATTT
Found at i:17587584 original size:29 final size:28
Alignment explanation
Indices: 17587551--17587622 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
17587541 AAAATTTCAA
17587551 AAAAATTACATTTTGACCC-CAAAACTTCT
1 AAAAATTACATTTT-ACCCTC-AAACTTCT
*
17587580 AAAAATTACCATTTTACCCTCAAACTTTT
1 AAAAATTA-CATTTTACCCTCAAACTTCT
* *
17587609 CAAAATTCCATTTT
1 AAAAATTACATTTT
17587623 TAACCTCGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 6 0.16
29 25 0.66
30 7 0.18
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (28 bp):
AAAAATTACATTTTACCCTCAAACTTCT
Found at i:17587584 original size:30 final size:30
Alignment explanation
Indices: 17587532--17587659 Score: 81
Period size: 29 Copynumber: 4.3 Consensus size: 30
17587522 GAAATTGTAT
* *
17587532 TTTTACTCT-AAAATTTCAAAAAAATTA-CA
1 TTTTACCCTCAAAACTTC-AAAAAATTACCA
*
17587561 TTTTGACCC-CAAAACTTCTAAAAATTACCA
1 TTTT-ACCCTCAAAACTTCAAAAAATTACCA
***
17587591 TTTTACCCTC-AAACTTTTCAAAATT-CCA
1 TTTTACCCTCAAAACTTCAAAAAATTACCA
* * *
17587619 TTTTTAACCTC--GATTTCACCAAAAATTACCA
1 -TTTTACCCTCAAAACTTCA--AAAAATTACCA
17587650 TTTTACCCTC
1 TTTTACCCTC
17587660 GAACTTTCCA
Statistics
Matches: 79, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
28 6 0.08
29 38 0.48
30 32 0.41
31 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.37
Consensus pattern (30 bp):
TTTTACCCTCAAAACTTCAAAAAATTACCA
Found at i:17587643 original size:59 final size:59
Alignment explanation
Indices: 17587580--17587807 Score: 341
Period size: 59 Copynumber: 3.9 Consensus size: 59
17587570 CAAAACTTCT
* * * *
17587580 AAAAATTACCATTTTACCCTCAAACTTTTCAAAATTCCATTTTTAACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * * * *
17587639 AAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCACTTTTAGCCCCGACTTCACA
1 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* *
17587698 AAAAATTACCACTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
*
17587757 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTACCCCCGA
1 AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGA
17587808 GAGTCCAAAA
Statistics
Matches: 152, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
58 11 0.07
59 141 0.93
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:17587660 original size:30 final size:28
Alignment explanation
Indices: 17587580--17587803 Score: 151
Period size: 29 Copynumber: 7.6 Consensus size: 28
17587570 CAAAACTTCT
* *
17587580 AAAAATTACCATTTTACCCTCAAACTTTTC
1 AAAAATT-CCATTTTACCCTC-GACTTTCC
*
17587610 -AAAATTCCATTTTTAACCTCGA-TTTCACC
1 AAAAATTCCA-TTTTACCCTCGACTTT--CC
17587639 AAAAATTACCATTTTACCCTCGAACTTTCC
1 AAAAATT-CCATTTTACCCTCG-ACTTTCC
17587669 -AAAATTCCACTTTTAGCCC-CGAC-TTCAC
1 AAAAATTCCA-TTTTA-CCCTCGACTTTC-C
* *
17587697 AAAAAATTACCACTTTACCCCCGAACTTT-C
1 -AAAAATT-CCATTTTACCCTCG-ACTTTCC
*
17587727 TAAAATTCCATTTTTAACCC-CGA-TTTCACC
1 AAAAATTCCA-TTTT-ACCCTCGACTTT--CC
*
17587757 AAAAATTACCATTTTACCCCCGAACTTTCC
1 AAAAATT-CCATTTTACCCTCG-ACTTTCC
17587787 -AAAATTCCATTTTACCC
1 AAAAATTCCATTTTACCC
17587804 CCGAGAGTCC
Statistics
Matches: 161, Mismatches: 8, Indels: 52
0.73 0.04 0.24
Matches are distributed among these distances:
27 9 0.06
28 25 0.16
29 53 0.33
30 53 0.33
31 13 0.08
32 8 0.05
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (28 bp):
AAAAATTCCATTTTACCCTCGACTTTCC
Found at i:17587732 original size:118 final size:117
Alignment explanation
Indices: 17587580--17587807 Score: 377
Period size: 118 Copynumber: 1.9 Consensus size: 117
17587570 CAAAACTTCT
* * *
17587580 AAAAATTACCATTTTACCCTCAAACTTTTCAAAATTCCATTTTTAACCTCGATTTCACCAAAAAT
1 AAAAATTACCACTTTACCCCCAAACTTTTCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
* *
17587645 TACCATTTTACCCTCGAACTTTCCAAAATTCCACTTTTAGCCCCGACTTCACA
66 TACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTACCCCCGACTTCACA
*
17587698 AAAAATTACCACTTTACCCCCGAAC-TTTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAAA
1 AAAAATTACCACTTTACCCCCAAACTTTTC-AAAATTCCATTTTTAACCCCGATTTCACCAAAAA
17587762 TTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTACCCCCGA
65 TTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTACCCCCGA
17587808 GAGTCCAAAA
Statistics
Matches: 103, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 15 0.15
118 88 0.85
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (117 bp):
AAAAATTACCACTTTACCCCCAAACTTTTCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTACCCCCGACTTCACA
Found at i:17587814 original size:27 final size:28
Alignment explanation
Indices: 17587640--17587832 Score: 128
Period size: 29 Copynumber: 6.7 Consensus size: 28
17587630 GATTTCACCA
* *
17587640 AAAATTACCATTTTACCCTCGAACTTTCC
1 AAAATTACCATTTTACCCCCGAAC-GTCC
* *
17587669 AAAATT-CCACTTTTAGCCCCG-ACTTCAC
1 AAAATTACCA-TTTTACCCCCGAACGTC-C
* * *
17587697 AAAAAATTACCACTTTACCCCCGAACTTTCT
1 --AAAATTACCATTTTACCCCCGAAC-GTCC
* * *
17587728 AAAATT-CCATTTTTAACCCCGATTTC-ACC
1 AAAATTACCA-TTTTACCCCCGA--ACGTCC
*
17587757 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATTACCATTTTACCCCCGAAC-GTCC
17587787 AAAATT-CCATTTTACCCCCGAGA-GTCC
1 AAAATTACCATTTTACCCCCGA-ACGTCC
*
17587814 AAAATTACCATTTTGCCCC
1 AAAATTACCATTTTACCCC
17587833 TAGGCATCCA
Statistics
Matches: 133, Mismatches: 15, Indels: 33
0.73 0.08 0.18
Matches are distributed among these distances:
27 12 0.09
28 36 0.27
29 39 0.29
30 34 0.26
31 9 0.07
32 3 0.02
ACGTcount: A:0.32, C:0.33, G:0.05, T:0.31
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCCGAACGTCC
Found at i:17600207 original size:75 final size:76
Alignment explanation
Indices: 17599962--17600638 Score: 1030
Period size: 76 Copynumber: 9.1 Consensus size: 76
17599952 ATCAGACCGC
17599962 AGCAAGATCA-TTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600026 ATTGAAGTAAG
66 ATTGAAGTAAG
17600037 AGCAACG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTC---
1 AGCAA-GATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
17600098 ---TGAAGTAAG
65 AATTGAAGTAAG
*
17600107 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600171 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
17600182 AGCAAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600246 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
17600257 AGCGAGATC-TTTGCCTATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGA
1 AGCAAGATCATTT-CCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGA
17600320 AATTGAAGTAAG
65 AATTGAAGTAAG
* * * *
17600332 AGCATGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600397 ATTGAAGTAAG
66 ATTGAAGTAAG
* * *
17600408 AGCAAAATCATTTCCTAT-C-C--G--CTTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600467 ATTGAAGTAAG
66 ATTGAAGTAAG
17600478 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
17600543 ATTGAAGTAAG
66 ATTGAAGTAAG
* * ** * *
17600554 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTCTG
1 AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTA--TCTCTG
17600619 AAATTGAAGTAAG
64 AAATTGAAGTAAG
17600632 AGCAAGA
1 AGCAAGA
17600639 CAGAGCATCA
Statistics
Matches: 558, Mismatches: 24, Indels: 37
0.90 0.04 0.06
Matches are distributed among these distances:
69 22 0.04
70 106 0.19
71 1 0.00
72 2 0.00
74 5 0.01
75 193 0.35
76 203 0.36
78 26 0.05
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (76 bp):
AGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAA
ATTGAAGTAAG
Found at i:17600628 original size:40 final size:39
Alignment explanation
Indices: 17600573--17600721 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 39
17600563 TTTTCCTATC
*
17600573 CTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTAT
1 CTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTAT
* *
17600612 CTCTCTGAAATTGAAGTAAGAGCAAGACAGAGCATCAAGATCATTTCCTAT
1 CTCT-TGAAATTGAAGTAA-AGC-TG---GA-TATCAAG-TC--TT--TAT
17600663 ACTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTAT
1 -CTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTAT
17600703 CTCTCTGAAATTGAAGTAA
1 CTCT-TGAAATTGAAGTAA
17600722 GAGCAAGATA
Statistics
Matches: 91, Mismatches: 5, Indels: 27
0.74 0.04 0.22
Matches are distributed among these distances:
39 8 0.09
40 31 0.34
41 2 0.02
42 3 0.03
44 2 0.02
45 8 0.09
46 8 0.09
47 2 0.02
49 3 0.03
50 3 0.03
51 17 0.19
52 4 0.04
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (39 bp):
CTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTAT
Found at i:17600711 original size:91 final size:91
Alignment explanation
Indices: 17600556--17600729 Score: 321
Period size: 91 Copynumber: 1.9 Consensus size: 91
17600546 GAAGTAAGAG
* *
17600556 CAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTCTGAA
1 CAAGATCATTTCCTATACTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTCTGAA
17600621 ATTGAAGTAAGAGCAAGACAGAGCAT
66 ATTGAAGTAAGAGCAAGACAGAGCAT
*
17600647 CAAGATCATTTCCTATACTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTCTGAA
1 CAAGATCATTTCCTATACTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTCTGAA
17600712 ATTGAAGTAAGAGCAAGA
66 ATTGAAGTAAGAGCAAGA
17600730 TAAAACCCCG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (91 bp):
CAAGATCATTTCCTATACTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTCTGAA
ATTGAAGTAAGAGCAAGACAGAGCAT
Found at i:17601012 original size:6 final size:6
Alignment explanation
Indices: 17600985--17601061 Score: 61
Period size: 6 Copynumber: 12.8 Consensus size: 6
17600975 GGCTTGGGTT
* * *
17600985 TTTAAA GTTTAAA -TTAAT TTTAAA TTT-AT TTTAAA TTTAAA TTTACTTA
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA
* *
17601034 TTTAAA TTT-AT TTTAGA TTTAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
17601062 TCAAATTTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
5 12 0.22
6 32 0.58
7 6 0.11
8 5 0.09
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:17601018 original size:17 final size:16
Alignment explanation
Indices: 17600998--17601060 Score: 76
Period size: 17 Copynumber: 3.9 Consensus size: 16
17600988 AAAGTTTAAA
17600998 TTAATTTTAAATTTATT
1 TTAA-TTTAAATTTATT
*
17601015 TTAAATTTAAATTTA-C
1 TT-AATTTAAATTTATT
17601031 TT-ATTTAAATTTATT
1 TTAATTTAAATTTATT
17601046 TTAGATTTAAATTTA
1 TTA-ATTTAAATTTA
17601061 ATCAAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 11 0.28
15 2 0.05
16 2 0.05
17 23 0.57
18 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (16 bp):
TTAATTTAAATTTATT
Found at i:17601022 original size:11 final size:11
Alignment explanation
Indices: 17600992--17601054 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
17600982 GTTTTTAAAG
*
17600992 TTTAAATTAAT
1 TTTAAATTTAT
17601003 TTTAAATTTAT
1 TTTAAATTTAT
*
17601014 TTTAAATTTAAA
1 TTTAAATTT-AT
*
17601026 TTT--ACTTA-
1 TTTAAATTTAT
17601034 TTTAAATTTAT
1 TTTAAATTTAT
*
17601045 TTTAGATTTA
1 TTTAAATTTA
17601055 AATTTAATCA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 3 0.07
9 1 0.02
10 7 0.16
11 28 0.65
12 4 0.09
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:17601867 original size:13 final size:13
Alignment explanation
Indices: 17601849--17601886 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
17601839 TAATGACATT
*
17601849 AATATTACTAATA
1 AATATTAATAATA
*
17601862 AATATTATTAATA
1 AATATTAATAATA
17601875 AATATTAATAAT
1 AATATTAATAAT
17601887 TTAATAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
AATATTAATAATA
Found at i:17603063 original size:29 final size:30
Alignment explanation
Indices: 17603010--17603086 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
17603000 AAAATTTTAA
* *
17603010 AAAAATTA-CATTTTAACCTCGAAACTTCT
1 AAAAATTACCATTTTAACCCCCAAACTTCT
*
17603039 AAAAATTACCATTTT-ACCCCCAAACTTTT
1 AAAAATTACCATTTTAACCCCCAAACTTCT
*
17603068 CAAAATT-CCATTTTTAACC
1 AAAAATTACCA-TTTTAACC
17603087 TCGATTTCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 3 0.07
29 29 0.71
30 9 0.22
ACGTcount: A:0.39, C:0.25, G:0.01, T:0.35
Consensus pattern (30 bp):
AAAAATTACCATTTTAACCCCCAAACTTCT
Found at i:17603083 original size:59 final size:57
Alignment explanation
Indices: 17603011--17603258 Score: 302
Period size: 59 Copynumber: 4.2 Consensus size: 57
17603001 AAATTTTAAA
* * *
17603011 AAAATTACA-TTTTAACCTCGAAACTT-CTAAAAATTACCATTTTACCCCCAAACTTTTC
1 AAAATTCCATTTTTAACCTCG--ACTTAC-AAAAATTACCATTTTACCCCCGAACTTTCC
* *
17603069 AAAATTCCATTTTTAACCTCGATTTCACCAAAAATTACCATTTTACCCCTGAACTTTCC
1 AAAATTCCATTTTTAACCTCGACTT-A-CAAAAATTACCATTTTACCCCCGAACTTTCC
* * *
17603128 AAAATTCCATTTTTAGCCTCGACTTCACAAAAAATTATCATTTTACCCCTGAACTTTCC
1 AAAATTCCATTTTTAACCTCGACTT-AC-AAAAATTACCATTTTACCCCCGAACTTTCC
* * *
17603187 AAAATTCCATTTTTAACCCCGATTTCACCAAAAGTTACCATTTTACCCCCGAACTTTCC
1 AAAATTCCATTTTTAACCTCGACTT-A-CAAAAATTACCATTTTACCCCCGAACTTTCC
17603246 AAAATTCCATTTT
1 AAAATTCCATTTT
17603259 GCCCTCGAGA
Statistics
Matches: 170, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
57 3 0.02
58 9 0.05
59 156 0.92
60 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.35
Consensus pattern (57 bp):
AAAATTCCATTTTTAACCTCGACTTACAAAAATTACCATTTTACCCCCGAACTTTCC
Found at i:17603113 original size:30 final size:30
Alignment explanation
Indices: 17603069--17603258 Score: 111
Period size: 30 Copynumber: 6.4 Consensus size: 30
17603059 CAAACTTTTC
*
17603069 AAAATTCCATTTTTAACCTCGATTTCACCA
1 AAAATTCCATTTTTAACCCCGATTTCACCA
17603099 AAAATTACCA-TTTT-ACCCCTGAACTTT--CC-
1 AAAATT-CCATTTTTAACCCC-G-A-TTTCACCA
* * * *
17603128 AAAATTCCATTTTTAGCCTCGACTTCACAA
1 AAAATTCCATTTTTAACCCCGATTTCACCA
*
17603158 AAAATTATCA-TTTT-ACCCCTGAACTTT--CC-
1 AAAATT-CCATTTTTAACCCC-G-A-TTTCACCA
17603187 AAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTCCATTTTTAACCCCGATTTCACCA
* *
17603217 AAAGTTACCA-TTTTACCCCCGAACTTT--CC-
1 AAAATT-CCATTTTTAACCCCG-A-TTTCACCA
17603246 AAAATTCCATTTT
1 AAAATTCCATTTT
17603259 GCCCTCGAGA
Statistics
Matches: 124, Mismatches: 14, Indels: 45
0.68 0.08 0.25
Matches are distributed among these distances:
27 5 0.04
28 10 0.08
29 40 0.32
30 50 0.40
31 11 0.09
32 8 0.06
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.35
Consensus pattern (30 bp):
AAAATTCCATTTTTAACCCCGATTTCACCA
Found at i:17603190 original size:118 final size:118
Alignment explanation
Indices: 17603039--17603258 Score: 377
Period size: 118 Copynumber: 1.9 Consensus size: 118
17603029 CGAAACTTCT
* *
17603039 AAAAATTACCATTTTACCCCCAAACTTTTCAAAATTCCATTTTTAACCTCGATTTCACCAAAAAT
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
*
17603104 TACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAGCCTCGACTTCACA
66 TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAGCCTCGACTTCACA
* ** *
17603157 AAAAATTATCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAGT
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
17603222 TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTT
66 TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTT
17603259 GCCCTCGAGA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 95 1.00
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (118 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAGCCTCGACTTCACA
Found at i:17603234 original size:29 final size:28
Alignment explanation
Indices: 17603068--17603235 Score: 107
Period size: 29 Copynumber: 5.7 Consensus size: 28
17603058 CCAAACTTTT
*
17603068 CAAAATT-CCATTTTTAACCTCGATTTCAC
1 CAAAATTACCA-TTTT-ACCCCGATTTCAC
17603097 CAAAAATTACCATTTTACCCCTGAACTTT--C
1 C-AAAATTACCATTTTACCCC-G-A-TTTCAC
* *
17603127 CAAAATT-CCATTTTTAGCCTCGACTTCAC
1 CAAAATTACCA-TTTTA-CCCCGATTTCAC
* *
17603156 AAAAAATTATCATTTTACCCCTGAACTTT--C
1 -CAAAATTACCATTTTACCCC-G-A-TTTCAC
17603186 CAAAATT-CCATTTTTAACCCCGATTTCAC
1 CAAAATTACCA-TTTT-ACCCCGATTTCAC
17603215 CAAAAGTTACCATTTTACCCC
1 CAAAA-TTACCATTTTACCCC
17603236 CGAACTTTCC
Statistics
Matches: 110, Mismatches: 9, Indels: 40
0.69 0.06 0.25
Matches are distributed among these distances:
27 5 0.05
28 7 0.06
29 43 0.39
30 40 0.36
31 10 0.09
32 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (28 bp):
CAAAATTACCATTTTACCCCGATTTCAC
Found at i:17606507 original size:770 final size:763
Alignment explanation
Indices: 17605628--17607167 Score: 2148
Period size: 770 Copynumber: 2.0 Consensus size: 763
17605618 TCACATGAAC
* * * *
17605628 TTTTAATGAGTTAATATTTTATGTAACTAACATGTCAGGTGGCGGTTATAAATTTCGAGATTCTA
1 TTTTAATGAATTAATATTTTATGTAACTAACATGTCAGGTGGCAGTCACAAATTTCGAGATTCTA
17605693 AAATTAAAAATATAATTACGAAAGTACCCAATGTAATCTATATGACTGCCACCTCCATTTTTCCC
66 AAATTAAAAATATAATTACGAAAGTACCCAATGTAATCTATATGACTGCCACCTCCATTTTTCCC
* * *
17605758 ACAAAAATATTATGACAATTTTTTTTCTATTTAAACTGCACTCCATTTTGTTGAAGTAATTTTTC
131 ACAAAAATATTATGACAATTTTTTCTCTATTTAAACTACACTCCATTTTGTTGAAGTAATTTTGC
* * *
17605823 TTTTCTTAG-TTTTTT-AAATTATTTTTTTTAATTTAGTTAATTTTTACTATCAAAGGTGATAAT
196 TTTTCTTAGTTTTTTTAAAATTA-TTTTTTTAATTTAATTAATTTTCACTATCAAAGGCGATAAT
*
17605886 ACTATTTGTATGCAATTGTTATAATTTTTTGTTATTTTTTTCTGAATGTGTGGATTGTTAGGAGA
260 ACTATTTGTATGCAATTGTTATAATTTTTTGTTA-TTTTTT-TGAATGTGTGGATTGTTAAGAGA
* * *
17605951 AGATAGATTGTAAATTAAATGTTGTGGCCCATTACAATGGACAAACTCACCTATATCAAAGACAT
323 AGATAGATCGTAAATTAAATGTTGTGACCCATTACAATGGACAAACTCACCTATATCAAAGACAC
* *
17606016 CGATTTGAATACTAGTAAATAAAAGTAGAAGGATAAAATTTGCACAAATCAATAAGTACAAGGAC
388 CAATTTGAATACTAGTAAATAAAAGTAGAAGGATAAAATTCGCACAAATCAATAAGTACAAGGAC
* * * * *
17606081 TATTCTTAGAATTTAAACAAAAATAATATTTGTTTCACTCGATAGTGACACACGA-CGCTCTTGA
453 TATACTTAGAATTTAAACAAAAATAATAATTGTTTCACTCGACAATAACACAC-ATCGCTCTTGA
* *
17606145 TATAAAATAATAATAA-TTT-TTTTTAAATTTCCA-TCTTACGCGACGGTTTCAAGATAAAAATG
517 TAT-AAATAATAATAATTTTGTTTTTAAA-AT-CATTCTT---CGA--GTTTCAAAAT-AAAATG
** * * *
17606207 TTTTTATTTTTG-AACTGTCTCTTTACATGGT-GGTTTCATGATATATAGAAAAAATTATTTCTA
573 TTTTTA-TTTTGAAAAGGTCTCTTTACAT-GTCGGTTTCAAGATATACAGAAAAAATTATTCCTA
*
17606270 AAAGTAACCCCTTATCCTGCGGTTTCAAATTAATAAAAAAATA-TATTTTT-AAAAATAGCTGGG
636 AAAGT-ACCCCTTATACTGCGGTTTCAAATTAATAAAAAAATATTATTTTTCAAAAATAGCT-GG
* *
17606333 TTAGGGAGTGGTCAGACCCTTACTCAGCTATCAATTGAAACATCCATTGCACAAAAAATATTCAA
699 TTAGGGAGCGGTCAGACCCTTACCCAGCTATCAATTGAAACATCCATTGCACAAAAAA-ATTCAA
17606398 A
763 A
* * * * *
17606399 TTTTAATGAATT-ATTTTTTATGTAATTGATATGTCAGGTGGCAGTCACAAATTTTGAGATTCTA
1 TTTTAATGAATTAATATTTTATGTAACTAACATGTCAGGTGGCAGTCACAAATTTCGAGATTCTA
* * *
17606463 AAATTGAAAATATAATTACGAAAGTACCCAATGTAATCTATATGACTGTCACCTCCATTTTTCTC
66 AAATTAAAAATATAATTACGAAAGTACCCAATGTAATCTATATGACTGCCACCTCCATTTTTCCC
* *
17606528 ACAAAAATATTGTGACAATTTTTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAATTTTGC
131 ACAAAAATATTATGACAATTTTTTCTCTATTTAAACTACACTCCATTTTGTTGAAGTAATTTTGC
17606593 TTTTCTTAGTTTTTTTTAAAATTATTTTTTTAATTTAATTAATTTTCACTATCAAAGGCGATAAT
196 TTTTCTTAG-TTTTTTTAAAATTATTTTTTTAATTTAATTAATTTTCACTATCAAAGGCGATAAT
** * * *
17606658 TTTATTTGTCTGTAATTGTTATAATTTTTTGTTATTTTTTTGAATGTGTGGGTTGTTAAGAGAAG
260 ACTATTTGTATGCAATTGTTATAATTTTTTGTTATTTTTTTGAATGTGTGGATTGTTAAGAGAAG
* * *
17606723 ATGGATCGTAAATTCAATGTTGTGACCCATTACAATGGACAAACTCAGCTATATCAAAGACACCA
325 ATAGATCGTAAATTAAATGTTGTGACCCATTACAATGGACAAACTCACCTATATCAAAGACACCA
* * * *
17606788 ATTTGAATGCTAGTAAATCAAAGTAGAAGGATAAAATTCGTACAAATCAATAAGTACAAGGGCTA
390 ATTTGAATACTAGTAAATAAAAGTAGAAGGATAAAATTCGCACAAATCAATAAGTACAAGGACTA
* *
17606853 TACTTAGAATTTAACCAAAAATAATAATTGTTTCACTCGACAATAACATACATCGCTCTTGATAT
455 TACTTAGAATTTAAACAAAAATAATAATTGTTTCACTCGACAATAACACACATCGCTCTTGATAT
* * ** * * * ** *
17606918 AAATGATAATAATTTTGTTTTTAAAATGATTCTTTTATTTTGAAAATGATTTTTTTTTATTTTGA
520 AAATAATAATAATTTTGTTTTTAAAATCATTCTTCGAGTTTCAAAATAAAATGTTTTTATTTTGA
* *
17606983 AAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAAAAGTTATTCCTAAAAGTACCCCTTAT
585 AAAGGTCTCTTTACATGTCGGTTTCAAGATATACAGAAAAAATTATTCCTAAAAGTACCCCTTAT
* * * *
17607048 ACTGCGGTTTCAAATTAATAAAAATATATTTTTTTTCTAAAATAGCTGGTTAGGGGGCGGTCAGA
650 ACTGCGGTTTCAAATTAATAAAAAAATATTATTTTTCAAAAATAGCTGGTTAGGGAGCGGTCAGA
* * * * *
17607113 CCCTTACCCAGTTGTTAATTGAAACATTCATTGCGCAAAAAAATTCAAA
715 CCCTTACCCAGCTATCAATTGAAACATCCATTGCACAAAAAAATTCAAA
17607162 TTTTAA
1 TTTTAA
17607168 AAGTTTTTAT
Statistics
Matches: 682, Mismatches: 76, Indels: 30
0.87 0.10 0.04
Matches are distributed among these distances:
763 55 0.08
764 112 0.16
765 16 0.02
767 1 0.00
769 13 0.02
770 380 0.56
771 25 0.04
772 74 0.11
773 6 0.01
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (763 bp):
TTTTAATGAATTAATATTTTATGTAACTAACATGTCAGGTGGCAGTCACAAATTTCGAGATTCTA
AAATTAAAAATATAATTACGAAAGTACCCAATGTAATCTATATGACTGCCACCTCCATTTTTCCC
ACAAAAATATTATGACAATTTTTTCTCTATTTAAACTACACTCCATTTTGTTGAAGTAATTTTGC
TTTTCTTAGTTTTTTTAAAATTATTTTTTTAATTTAATTAATTTTCACTATCAAAGGCGATAATA
CTATTTGTATGCAATTGTTATAATTTTTTGTTATTTTTTTGAATGTGTGGATTGTTAAGAGAAGA
TAGATCGTAAATTAAATGTTGTGACCCATTACAATGGACAAACTCACCTATATCAAAGACACCAA
TTTGAATACTAGTAAATAAAAGTAGAAGGATAAAATTCGCACAAATCAATAAGTACAAGGACTAT
ACTTAGAATTTAAACAAAAATAATAATTGTTTCACTCGACAATAACACACATCGCTCTTGATATA
AATAATAATAATTTTGTTTTTAAAATCATTCTTCGAGTTTCAAAATAAAATGTTTTTATTTTGAA
AAGGTCTCTTTACATGTCGGTTTCAAGATATACAGAAAAAATTATTCCTAAAAGTACCCCTTATA
CTGCGGTTTCAAATTAATAAAAAAATATTATTTTTCAAAAATAGCTGGTTAGGGAGCGGTCAGAC
CCTTACCCAGCTATCAATTGAAACATCCATTGCACAAAAAAATTCAAA
Found at i:17606958 original size:20 final size:19
Alignment explanation
Indices: 17606930--17606972 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
17606920 ATGATAATAA
* *
17606930 TTTTGTTTTTAAAATGATT
1 TTTTATTTTGAAAATGATT
17606949 CTTTTATTTTGAAAATGATT
1 -TTTTATTTTGAAAATGATT
17606969 TTTT
1 TTTT
17606973 TTTATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (19 bp):
TTTTATTTTGAAAATGATT
Found at i:17606973 original size:20 final size:21
Alignment explanation
Indices: 17606930--17606985 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
17606920 ATGATAATAA
* *
17606930 TTTTGTTTTTAAAATGA-TTC
1 TTTTATTTTGAAAATGATTTC
*
17606950 TTTTATTTTGAAAATGATTTTT
1 TTTTATTTTGAAAATGA-TTTC
17606972 TTTTATTTTGAAAA
1 TTTTATTTTGAAAA
17606986 GGTCTCTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 15 0.48
22 16 0.52
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.61
Consensus pattern (21 bp):
TTTTATTTTGAAAATGATTTC
Found at i:17607529 original size:309 final size:306
Alignment explanation
Indices: 17606957--17607571 Score: 1036
Period size: 309 Copynumber: 2.0 Consensus size: 306
17606947 TTCTTTTATT
17606957 TTGAAAATGATTTTTTTTTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAA
1 TTGAAAATGATTTTTTTTTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAA
*
17607022 AAGTTATTCCTAAAAGTACCCCTTATACTGCGGTTTCAAATTAATAAAAATATATTTTTTTTCTA
66 AAGTTATTCCTAAAAGCACCCCTTATACTGCGGTTTCAAATTAATAAAAATATATTTTTTTTCTA
* * *
17607087 AAATAGCTGGTTAGGGGGCGGTCAGACCCTTACCCAGTTGTTAATTGAAACATTCATTGCGCAAA
131 AAATAGCTGGTTAAGGGGCGGTCAGACCCTTACCCAGCTATTAATTGAAACATTCATTGCGCAAA
17607152 AAAATTCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAGTCCATCAAACCCAGTCCCCAA
196 AAAATTCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAGTCCATCAAACCCAGTCCCCAA
17607217 CAAAATCACGTCACATGACACTTTAATAAATTATTATTTTTT-TGAA
261 CAAAATCACGTCACATGACACTTTAATAAATTATT-TTTTTTCTGAA
* * *
17607263 TTGAAAATTATTATTATTTTTATTTTGGAAAGGTCTCTTTATATGTCGGTTTCAAGATATACATA
1 TTGAAAATGATT-TT-TTTTTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGA
* *
17607328 AAAAGTTATTCCTAAAAGCGCCCCATTATACTGTGGTTTCAAATTAATAAAAATATA-TTTTTTT
64 AAAAGTTATTCCTAAAAGCACCCC-TTATACTGCGGTTTCAAATTAATAAAAATATATTTTTTTT
* *
17607392 CTAAAATAGCTGAGTTAAGGGGTGGTCAGACCCTTACCCCGCTATTAATTGAAACATTCATTGCG
128 CTAAAATAGCTG-GTTAAGGGGCGGTCAGACCCTTACCCAGCTATTAATTGAAACATTCATTGCG
* * *
17607457 CAAAAAAATTTAAATTTTAAAAGTTTTTATTCGACCTAGTTCCTTTAGTCCATCAAACCCAGTCC
192 CAAAAAAATTCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAGTCCATCAAACCCAGTCC
*
17607522 CCAACAAAATCATGTCACATGACACTTTAATAAATTATTTTTTTTCTGAA
257 CCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTTCTGAA
17607572 ATTAACATTT
Statistics
Matches: 289, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
306 11 0.04
307 2 0.01
308 94 0.33
309 182 0.63
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (306 bp):
TTGAAAATGATTTTTTTTTATTTTGAAAAGGTCTCTTTATATGTCGGTTTCAAGATATACAGAAA
AAGTTATTCCTAAAAGCACCCCTTATACTGCGGTTTCAAATTAATAAAAATATATTTTTTTTCTA
AAATAGCTGGTTAAGGGGCGGTCAGACCCTTACCCAGCTATTAATTGAAACATTCATTGCGCAAA
AAAATTCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAGTCCATCAAACCCAGTCCCCAA
CAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTTCTGAA
Found at i:17612393 original size:51 final size:50
Alignment explanation
Indices: 17612286--17612462 Score: 248
Period size: 51 Copynumber: 3.5 Consensus size: 50
17612276 TTTCATTTAA
* * * * *
17612286 TACTCACGATGACA-TATTGTCATCGAACCAATTAATTCGTCATGGATTCATT
1 TACTCACGATGACACT-TAGTCATCG-ACC-TTTAATCCGTAAAGGATTCATT
17612338 TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATC-GACCTTTAATCCGTAAAGGATTCATT
*
17612389 TACTCACGATGACACTTAGTCATTGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCA-TCGACCTTTAATCCGTAAAGGATTCATT
17612440 TACTCACGATGACACTTAGTCAT
1 TACTCACGATGACACTTAGTCAT
17612463 TGGACTCTTT
Statistics
Matches: 116, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
50 1 0.01
51 88 0.76
52 25 0.22
53 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.33
Consensus pattern (50 bp):
TACTCACGATGACACTTAGTCATCGACCTTTAATCCGTAAAGGATTCATT
Found at i:17612463 original size:51 final size:51
Alignment explanation
Indices: 17612329--17612472 Score: 261
Period size: 51 Copynumber: 2.8 Consensus size: 51
17612319 AATTCGTCAT
**
17612329 GGATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAA
1 GGATTCATTTACTCACGATGACACTTAGTCATTGGACCTTTAATCCGTAAA
17612380 GGATTCATTTACTCACGATGACACTTAGTCATTGGACCTTTAATCCGTAAA
1 GGATTCATTTACTCACGATGACACTTAGTCATTGGACCTTTAATCCGTAAA
17612431 GGATTCATTTACTCACGATGACACTTAGTCATTGGACTCTTT
1 GGATTCATTTACTCACGATGACACTTAGTCATTGGAC-CTTT
17612473 CGTTTATAGC
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
51 86 0.96
52 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (51 bp):
GGATTCATTTACTCACGATGACACTTAGTCATTGGACCTTTAATCCGTAAA
Found at i:17623151 original size:337 final size:337
Alignment explanation
Indices: 17622536--17623182 Score: 963
Period size: 337 Copynumber: 1.9 Consensus size: 337
17622526 GATATCACTT
* * * * *
17622536 ATTTAATAGATCAGATATGGTAAATCATTTAAATTCCAGATACAGAGCATATTAGATACAAAACT
1 ATTTAATAGATCAGATATGGTAAATCATTTAAATTCCAAATACAAAGCAGATCAGATACAAAACA
* * * *
17622601 GATCAGTTATAGATAAAAATGCAATTTTCTTACCCCTATCCGTTACACACCATCTCCGTCCATAC
66 GAACAGATATAGATAAAAATGCAATTTTCTTACCCCCATCCGCTACACACCATCTCCGTCCATAC
* * * * * *
17622666 CAACACACTATATAGGTATTTGATACCTATCCAAACCTACACATCGCATAGTATCGGTATGAGAT
131 CAACACACAATATAGGTATTTGATACCCATCCAAACCTACACATCACATAATATCGGTATGACAC
* * ** *
17622731 GGTTCAATAATTGTAGTCTAGCTGCCAAATTAGATTATGGATATTGGTGGCTTAACCACTAATAT
196 GGTTCAATAATTGTAGTCTAGCAGCCAAATTAGATCACAGATATTGGTGGCTTAACCACTAATAC
* *
17622796 AGAATAGAACACTTCCTTCTTTACATACTTCTAACCCCATGCAAATGCAGTATCATTTTTAGATA
261 AGAACAAAACACTTCCTTCTTTACATACTTCTAACCCCATGCAAATGCAGTATCATTTTTAGATA
17622861 TCACTTATTCAA
326 TCACTTATTCAA
* * * *
17622873 ATTTAATA-ATCCAGATATGGTGAATCATTTAAATTTCAAATATAAAGCAGATCAGATACAGAAC
1 ATTTAATAGAT-CAGATATGGTAAATCATTTAAATTCCAAATACAAAGCAGATCAGATACAAAAC
* *
17622937 AGAACAGATATAGATACAAATGCAATTTTCTTACCCCCATCCGCTACACACCATCTCTGTCCATA
65 AGAACAGATATAGATAAAAATGCAATTTTCTTACCCCCATCCGCTACACACCATCTCCGTCCATA
* * *
17623002 CCAACACACAATATAGGTATTTGATACCCATCCAACCCTACACATCACATAATGTTGGTATGACA
130 CCAACACACAATATAGGTATTTGATACCCATCCAAACCTACACATCACATAATATCGGTATGACA
* *
17623067 CGGTTCAGTAATTGTAGTCTAGCAGCCAAATTAGATCACAGATATTGGTGGCTTAGCCACTAATA
195 CGGTTCAATAATTGTAGTCTAGCAGCCAAATTAGATCACAGATATTGGTGGCTTAACCACTAATA
* *
17623132 CAGAACAAAACACTTCCTTCTTTAGATACTTCTAACCTCATGCAAATGCAG
260 CAGAACAAAACACTTCCTTCTTTACATACTTCTAACCCCATGCAAATGCAG
17623183 AATTCAGATA
Statistics
Matches: 274, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
336 2 0.01
337 272 0.99
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.30
Consensus pattern (337 bp):
ATTTAATAGATCAGATATGGTAAATCATTTAAATTCCAAATACAAAGCAGATCAGATACAAAACA
GAACAGATATAGATAAAAATGCAATTTTCTTACCCCCATCCGCTACACACCATCTCCGTCCATAC
CAACACACAATATAGGTATTTGATACCCATCCAAACCTACACATCACATAATATCGGTATGACAC
GGTTCAATAATTGTAGTCTAGCAGCCAAATTAGATCACAGATATTGGTGGCTTAACCACTAATAC
AGAACAAAACACTTCCTTCTTTACATACTTCTAACCCCATGCAAATGCAGTATCATTTTTAGATA
TCACTTATTCAA
Found at i:17626110 original size:29 final size:30
Alignment explanation
Indices: 17626058--17626360 Score: 212
Period size: 30 Copynumber: 10.1 Consensus size: 30
17626048 TTTTAAGGGA
* *
17626058 AAAATGTAATTTTTGG-GAAAGTTT-GGGGTT
1 AAAATGTGA-TTTTGGAG-AAGTTTAGGGGTC
*
17626088 AAAATGTGATTTTGGAGAAGTTT-GGGGTT
1 AAAATGTGATTTTGGAGAAGTTTAGGGGTC
*
17626117 AAAATATGATTTT-GAGAAGGTTTATGGGGGTC
1 AAAATGTGATTTTGGAGAA-GTTTA--GGGGTC
* **
17626149 GAAATGTGATTTTAAAGAAGTTTAGGGGTC
1 AAAATGTGATTTTGGAGAAGTTTAGGGGTC
* * *
17626179 AAAATGTAATTTTGGAAAAGTTTTA-GGGTT
1 AAAATGTGATTTTGGAGAAG-TTTAGGGGTC
* * ** *
17626209 AAATTATGATTTTAGGA-AAGTTTAAAGGTT
1 AAAATGTGATTTT-GGAGAAGTTTAGGGGTC
* *
17626239 AAAATGTGATTTTTG-GAAGTTTAAGGGTC
1 AAAATGTGATTTTGGAGAAGTTTAGGGGTC
** * *
17626268 AAAATGTGATTTTAAAAAAGTTT-GAGGGTG
1 AAAATGTGATTTTGGAGAAGTTTAG-GGGTC
*
17626298 AAAATATGATTTTGGA-AATGTTTAGGGGTC
1 AAAATGTGATTTTGGAGAA-GTTTAGGGGTC
* * * *
17626328 AAGATGTAATTTTGAAAAAGTTT-GGGGATC
1 AAAATGTGATTTTGGAGAAGTTTAGGGG-TC
17626358 AAA
1 AAA
17626361 GTATAATTTT
Statistics
Matches: 222, Mismatches: 35, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
28 5 0.02
29 69 0.31
30 113 0.51
31 10 0.05
32 21 0.09
33 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (30 bp):
AAAATGTGATTTTGGAGAAGTTTAGGGGTC
Found at i:17626280 original size:89 final size:89
Alignment explanation
Indices: 17626058--17626340 Score: 286
Period size: 89 Copynumber: 3.1 Consensus size: 89
17626048 TTTTAAGGGA
* * * *
17626058 AAAATGTAATTTTTGGGAAAGTTT-GGGGTTAAAATGTGATTTTGGAGAAG-TTTGGGGTTAAAA
1 AAAATGTGATTTTT-GG-AAGTTTAGGGGTCAAAATGTGATTTTGGAAAAGTTTTAGGGTTAAAA
* **
17626121 TATGATTTTGAGAAGGTTTATGGGGGTC
64 TATGATTTTG-GAAAGTTTA-GAAGGTC
* ** * *
17626149 GAAATGTGATTTTAAAGAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTTAAATT
1 AAAATGTGATTTT-TGGAAGTTTAGGGGTCAAAATGTGATTTTGGAAAAGTTTTAGGGTTAAAAT
*
17626214 ATGATTTTAGGAAAGTTTA-AAGGTT
65 ATGATTTT-GGAAAGTTTAGAAGGTC
* ** * *
17626239 AAAATGTGATTTTTGGAAGTTTAAGGGTCAAAATGTGATTTTAAAAAAGTTTGAGGGTGAAAATA
1 AAAATGTGATTTTTGGAAGTTTAGGGGTCAAAATGTGATTTTGGAAAAGTTTTAGGGTTAAAATA
*
17626304 TGATTTTGGAAATGTTTAG-GGGTC
66 TGATTTTGGAAA-GTTTAGAAGGTC
* *
17626328 AAGATGTAATTTT
1 AAAATGTGATTTT
17626341 GAAAAAGTTT
Statistics
Matches: 159, Mismatches: 27, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
88 5 0.03
89 69 0.43
90 21 0.13
91 35 0.22
92 28 0.18
93 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.27, T:0.37
Consensus pattern (89 bp):
AAAATGTGATTTTTGGAAGTTTAGGGGTCAAAATGTGATTTTGGAAAAGTTTTAGGGTTAAAATA
TGATTTTGGAAAGTTTAGAAGGTC
Found at i:17626390 original size:30 final size:30
Alignment explanation
Indices: 17626334--17626390 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
17626324 GGTCAAGATG
*
17626334 TAATTTTGAAAAAGTTTGGGGATCAAAGTA
1 TAATTTTGAAAAAGTTTGGAGATCAAAGTA
**
17626364 TAATTTTGGGAAAGTTT-GAGAGTCAAA
1 TAATTTTGAAAAAGTTTGGAGA-TCAAA
17626391 ATATGGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 3 0.13
30 20 0.87
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.33
Consensus pattern (30 bp):
TAATTTTGAAAAAGTTTGGAGATCAAAGTA
Found at i:17627908 original size:7 final size:7
Alignment explanation
Indices: 17627893--17627934 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
17627883 TTGGATAAAA
17627893 TAAATTT
1 TAAATTT
*
17627900 TAAAATT
1 TAAATTT
*
17627907 TAAA--A
1 TAAATTT
17627912 TAAATTT
1 TAAATTT
17627919 TAAATTT
1 TAAATTT
17627926 TAAATTT
1 TAAATTT
17627933 TA
1 TA
17627935 TTTTTGGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
5 4 0.13
7 26 0.87
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
TAAATTT
Found at i:17627938 original size:19 final size:19
Alignment explanation
Indices: 17627888--17627929 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
17627878 GACATTTGGA
17627888 TAAAATAAATTTTAAAATT
1 TAAAATAAATTTTAAAATT
*
17627907 TAAAATAAATTTTAAATTT
1 TAAAATAAATTTTAAAATT
17627926 TAAA
1 TAAA
17627930 TTTTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAAAATAAATTTTAAAATT
Found at i:17629912 original size:30 final size:29
Alignment explanation
Indices: 17629877--17630218 Score: 404
Period size: 30 Copynumber: 11.5 Consensus size: 29
17629867 TTGACCCTCG
* * *
17629877 AACTTTCAAAAAATCACATTTTAACCACTG
1 AACTTTCCAAAAATTACATTTTAACC-CTA
17629907 AACTTTCCAAAAATTACATTTT-ACCACTA
1 AACTTTCCAAAAATTACATTTTAACC-CTA
*
17629936 AACTTTTCAAAAATTACATTTTAACCTCTA
1 AACTTTCCAAAAATTACATTTTAACC-CTA
** *
17629966 AACTTTCCAAAAACCACATTTTAACCCCCAA
1 AACTTTCCAAAAATTACATTTTAA--CCCTA
*
17629997 AACTTTCCAAAAATTATATTTTAACCCTCA
1 AACTTTCCAAAAATTACATTTTAACCCT-A
*
17630027 AAC-TTCTCAAAAATTACATTTTACCCCTA
1 AACTTTC-CAAAAATTACATTTTAACCCTA
* *
17630056 AACTTTCCAAAAATTACATTTTGACTCTTA
1 AACTTTCCAAAAATTACATTTTAAC-CCTA
* *
17630086 AACTTTCTAAAAATTACATTTTGACCCTCA
1 AACTTTCCAAAAATTACATTTTAACCCT-A
17630116 AAC-TTCCAAAAATTACATTTTAATCCC-A
1 AACTTTCCAAAAATTACATTTTAA-CCCTA
17630144 GAACTTTCCAAAAATTACATTTTAACCCCTA
1 -AACTTTCCAAAAATTACATTTTAA-CCCTA
*
17630175 AACTTTCCAAAAATTACATTTTAACCCCCA
1 AACTTTCCAAAAATTACATTTTAA-CCCTA
*
17630205 AACTTTCCCAAAAT
1 AACTTTCCAAAAAT
17630219 CGTATTTTGA
Statistics
Matches: 275, Mismatches: 25, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
28 1 0.00
29 76 0.28
30 172 0.63
31 24 0.09
32 2 0.01
ACGTcount: A:0.40, C:0.25, G:0.01, T:0.33
Consensus pattern (29 bp):
AACTTTCCAAAAATTACATTTTAACCCTA
Found at i:17629955 original size:59 final size:59
Alignment explanation
Indices: 17629877--17630218 Score: 417
Period size: 59 Copynumber: 5.7 Consensus size: 59
17629867 TTGACCCTCG
* * * *
17629877 AACTTTCAAAAAATCACATTTTAACCACTGAACTTTCCAAAAATTACATTTT-ACCACTA
1 AACTTTCCAAAAATTACATTTTAACC-CTAAACTTTCCAAAAATTACATTTTAACCCCTA
* ** *
17629936 AACTTTTCAAAAATTACATTTTAACCTCTAAACTTTCCAAAAACCACATTTTAACCCCCAA
1 AACTTTCCAAAAATTACATTTTAACC-CTAAACTTTCCAAAAATTACATTTTAA-CCCCTA
*
17629997 AACTTTCCAAAAATTATATTTTAACCCTCAAAC-TTCTCAAAAATTACATTTT-ACCCCTA
1 AACTTTCCAAAAATTACATTTTAACCCT-AAACTTTC-CAAAAATTACATTTTAACCCCTA
* * * *
17630056 AACTTTCCAAAAATTACATTTTGACTCTTAAACTTTCTAAAAATTACATTTTGA-CCCTCA
1 AACTTTCCAAAAATTACATTTTAAC-CCTAAACTTTCCAAAAATTACATTTTAACCCCT-A
17630116 AAC-TTCCAAAAATTACATTTTAATCCC-AGAACTTTCCAAAAATTACATTTTAACCCCTA
1 AACTTTCCAAAAATTACATTTTAA-CCCTA-AACTTTCCAAAAATTACATTTTAACCCCTA
* *
17630175 AACTTTCCAAAAATTACATTTTAACCCCCAAACTTTCCCAAAAT
1 AACTTTCCAAAAATTACATTTTAA-CCCTAAACTTTCCAAAAAT
17630219 CGTATTTTGA
Statistics
Matches: 246, Mismatches: 24, Indels: 25
0.83 0.08 0.08
Matches are distributed among these distances:
58 1 0.00
59 141 0.57
60 58 0.24
61 46 0.19
ACGTcount: A:0.40, C:0.25, G:0.01, T:0.33
Consensus pattern (59 bp):
AACTTTCCAAAAATTACATTTTAACCCTAAACTTTCCAAAAATTACATTTTAACCCCTA
Found at i:17629984 original size:89 final size:89
Alignment explanation
Indices: 17629877--17630210 Score: 442
Period size: 89 Copynumber: 3.7 Consensus size: 89
17629867 TTGACCCTCG
* * *
17629877 AACTTTCAAAAAATCACATTTTAACCACTGAACTTTCCAAAAATTACATTTT-ACCACT-AAACT
1 AACTTTCCAAAAATCACATTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACC-CTCAAACT
17629940 TTTCAAAAATTACATTTTAACCTCTA
65 TTTCAAAAATTACATTTTAACC-CTA
* * *
17629966 AACTTTCCAAAAACCACATTTTAACCCCCAAAACTTTCCAAAAATTATATTTTAACCCTCAAACT
1 AACTTTCCAAAAATCACATTTTAA-CCCCTAAACTTTCCAAAAATTACATTTTAACCCTCAAACT
* *
17630031 TCTCAAAAATTACATTTTACCCCTA
65 TTTCAAAAATTACATTTTAACCCTA
* * * * * *
17630056 AACTTTCCAAAAATTACATTTTGACTCTTAAACTTTCTAAAAATTACATTTTGACCCTCAAAC-T
1 AACTTTCCAAAAATCACATTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCTCAAACTT
*
17630120 TCCAAAAATTACATTTTAATCCC-A
66 TTCAAAAATTACATTTTAA-CCCTA
* *
17630144 GAACTTTCCAAAAATTACATTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCCCAAACT
1 -AACTTTCCAAAAATCACATTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCTCAAACT
17630209 TT
65 TT
17630211 CCCAAAATCG
Statistics
Matches: 213, Mismatches: 26, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
88 18 0.08
89 115 0.54
90 52 0.24
91 28 0.13
ACGTcount: A:0.40, C:0.25, G:0.01, T:0.34
Consensus pattern (89 bp):
AACTTTCCAAAAATCACATTTTAACCCCTAAACTTTCCAAAAATTACATTTTAACCCTCAAACTT
TTCAAAAATTACATTTTAACCCTA
Found at i:17631121 original size:321 final size:321
Alignment explanation
Indices: 17630531--17631123 Score: 900
Period size: 321 Copynumber: 1.8 Consensus size: 321
17630521 ATTTCAAAAT
* * *
17630531 CGAGGCAACATCCTATCGTGAGAAAATCTTGAAAAATTATGCCCTAACGTGCTGGGTGTGATTTT
1 CGAGGCAACATCCTATCGTGAGAAAAGCTTAAAAAATTATGCCCTAACGTGCAGGGTGTGATTTT
*
17630596 TCGTATAATTCCCGCGATAGAATATCCTCTTTAAAACTTTTCAAAGTGTCATTCAATTTCAAAAT
66 TCGTATAATTCCCACGATAGAATATCCTCTTTAAAACTTTTCAAAGTGTCATTCAATTTCAAAAT
* *
17630661 TCCGAGAACGTCGTGCCCTAACGTGTTGGATACGACTTCAATTCTCTGAGAAATTCGAAACACGC
131 TCCGAGAACGTCGTGCCCTAACGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAACACGC
* ** * *** * *
17630726 GGGCATTTCTCTTCAAATCTAATTTTTGAAATTCACGTGAAATAAGTTATGTGTTCGAGGATCGT
196 GGGCATTTCTCTTCAAATCTAATTTTTGAAAATCACGCAAAATAAGTTATATGTAAAAAGATCAT
17630791 ATGTTAAACTTCATTCGAAATTTCAAGTTCTCAAAAATATATAAATAATTTTAAACACAAA
261 ATGTTAAACTTCATTCGAAATTTCAAGTTCTCAAAAATATATAAATAATTTTAAACACAAA
* * *
17630852 CGAGGCAATATCCTTTCGTGTG-AAAGCTTCAAAAAATTATGCCCTAACGTGCAGGGTGTGATTT
1 CGAGGCAACATCCTATCGTGAGAAAAGCTT-AAAAAATTATGCCCTAACGTGCAGGGTGTGATTT
** * * *
17630916 TTTTTATAATTCGCACGATCGAATATCCTCTTTAAAACTTTTCAAAGTGTCCTTCAATTTCAAAA
65 TTCGTATAATTCCCACGATAGAATATCCTCTTTAAAACTTTTCAAAGTGTCATTCAATTTCAAAA
*
17630981 TTTCGAGAACGTCGTGCCCTAACGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAACACG
130 TTCCGAGAACGTCGTGCCCTAACGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAACACG
* * * * *
17631046 CGGGCATTTTTCTTCAAATTTGATTTTTGAAAATCATGCAAAATGAGTTATATGTAAAAAGATCA
195 CGGGCATTTCTCTTCAAATCTAATTTTTGAAAATCACGCAAAATAAGTTATATGTAAAAAGATCA
*
17631111 TATTTTAAACTTC
260 TATGTTAAACTTC
17631124 GCTCGAGCTT
Statistics
Matches: 241, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
320 6 0.02
321 235 0.98
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (321 bp):
CGAGGCAACATCCTATCGTGAGAAAAGCTTAAAAAATTATGCCCTAACGTGCAGGGTGTGATTTT
TCGTATAATTCCCACGATAGAATATCCTCTTTAAAACTTTTCAAAGTGTCATTCAATTTCAAAAT
TCCGAGAACGTCGTGCCCTAACGTGTTGGACACGACTTCAATTCTCCGAGAAATTCGAAACACGC
GGGCATTTCTCTTCAAATCTAATTTTTGAAAATCACGCAAAATAAGTTATATGTAAAAAGATCAT
ATGTTAAACTTCATTCGAAATTTCAAGTTCTCAAAAATATATAAATAATTTTAAACACAAA
Found at i:17642408 original size:39 final size:37
Alignment explanation
Indices: 17642373--17642945 Score: 302
Period size: 39 Copynumber: 14.8 Consensus size: 37
17642363 AGTCAATCTC
* *
17642373 TTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
* *
17642412 TTACCCCGGGCCT-GGGAAGA-TCACCATCATCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATTCA-C--CATCCGATCTT
* * * * *
17642450 TTACCCTGAGCCTGAGGTAGATTACGGCCATTCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-C-ACCATCCGATCTT
* *
17642489 TTACCCCGAGCCTGAGGTAGA-TCACCATCTTCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATTCACCA---TCCGATCTT
** * * *
17642528 TTACCTTGAGCCTAGGGCAGA-TCACCATCAGCCAATCTC
1 TTACCCCGAGCCTGGGGCAGATTCACCAT---CCGATCTT
* * * * *
17642567 TTACCTCGAGCTTAGGGTAGATTGCAGCCACCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
* *
17642606 TTACCCCGAGCCT-GGGCAGA-TCACCATCAGTCAATCTC
1 TTACCCCGAGCCTGGGGCAGATTCACCATC---CGATCTT
* *
17642644 TTACCCCGAGCCTAGGGCGGATTACAGCCATCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
** * *
17642683 TTACCCCGAGCCTAAGGCA-AATCACCATCAACCAATCTT
1 TTACCCCGAGCCTGGGGCAGATTCACCAT---CCGATCTT
* * * *
17642722 TTACCTCGAGCCTAGAGCAGATTGCAGCCACCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
* * * *
17642761 TTACCCTGAGCTTGGGGCAGA-TCACCATCAACCCATCTC
1 TTACCCCGAGCCTGGGGCAGATTCACCAT---CCGATCTT
*
17642800 TTACCCCGAGCCTGGGGCGGATTGCAGCCATCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
* * * *
17642839 TTACCCCGAGCTTGGGGCAGA-TCACAATCAGCCAATCTC
1 TTACCCCGAGCCTGGGGCAGATTCAC---CATCCGATCTT
** ** * *
17642878 TTACCCCGAGCCTAAGATAGATTGTAGCCACCCGATCTT
1 TTACCCCGAGCCTGGGGCAGATT-CA-CCATCCGATCTT
* * *
17642917 TTACCCCAAGCTTGGGGCA-AATCACCATC
1 TTACCCCGAGCCTGGGGCAGATTCACCATC
17642946 AACCAATATC
Statistics
Matches: 412, Mismatches: 82, Indels: 83
0.71 0.14 0.14
Matches are distributed among these distances:
35 4 0.01
36 21 0.05
37 10 0.02
38 57 0.14
39 286 0.69
40 7 0.02
41 11 0.03
42 16 0.04
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (37 bp):
TTACCCCGAGCCTGGGGCAGATTCACCATCCGATCTT
Found at i:17642480 original size:77 final size:77
Alignment explanation
Indices: 17642310--17642701 Score: 264
Period size: 77 Copynumber: 5.1 Consensus size: 77
17642300 AATCAGGAAG
* * * * * * * *
17642310 GGCAGATTGA-AGCCATCCGATTTTTTACCCCGAACCTGGGGCAGATCACCATTAGT-CAATCTC
1 GGCAGATT-ACAGCCATTCAATCTTTTACCCCGAGCCT-GGGAAGATCACCATCA-TCCGATCTT
* *
17642373 TTACCCCGAGCCTGG
63 TTACCCTGAGCCTGA
* *
17642388 GGCAGATTGCAGCCATTCAATCTTTTACCCCGGGCCTGGGAAGATCACCATCATCCGATCTTTTA
1 GGCAGATTACAGCCATTCAATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCGATCTTTTA
17642453 CCCTGAGCCTGA
66 CCCTGAGCCTGA
* * * * *
17642465 GGTAGATTACGGCCATTCGATCTTTTACCCCGAGCCTGAGGTAGATCACCATCTTCCGATCTTTT
1 GGCAGATTACAGCCATTCAATCTTTTACCCCGAGCCTG-GGAAGATCACCATCATCCGATCTTTT
*
17642530 ACCTTGAGCCT-A
65 ACCCTGAGCCTGA
* * ** * * * *
17642542 GGGCAGATCACCA-TCAGCCAATCTCTTACCTCGAGCTTAGGGTAGATTGCAGCCA-C--CCGAT
1 -GGCAGATTA-CAGCCATTCAATCTTTTACCCCGAGCCT-GGGAAGA-T-CA-CCATCATCCGAT
*
17642603 CTTTTACCCCGAGCCTG-
60 CTTTTACCCTGAGCCTGA
* * * * ** * *
17642620 GGCAGATCACCA-TCAGTCAATCTCTTACCCCGAGCCTAGGGCGGATTA-CAGCCATCCGATCTT
1 GGCAGATTA-CAGCCATTCAATCTTTTACCCCGAGCCT-GGGAAGATCACCA-TCATCCGATCTT
* *
17642683 TTACCCCGAGCCTAA
63 TTACCCTGAGCCTGA
17642698 GGCA
1 GGCA
17642702 AATCACCATC
Statistics
Matches: 260, Mismatches: 39, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
73 2 0.01
75 2 0.01
76 2 0.01
77 127 0.49
78 118 0.45
79 3 0.01
80 3 0.01
81 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (77 bp):
GGCAGATTACAGCCATTCAATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCGATCTTTTA
CCCTGAGCCTGA
Found at i:17642571 original size:78 final size:77
Alignment explanation
Indices: 17642405--17642966 Score: 466
Period size: 78 Copynumber: 7.2 Consensus size: 77
17642395 TGCAGCCATT
* * * *
17642405 CAATCTTTTACCCCGGGCCTG-GGAAGAT-CA-CCATCATCCGATCTTTTACCCTGAGCCTGAGG
1 CAATCTCTTACCCCGAGCCTGAGGCAGATGCAGCCA-C-TCCGATCTTTTACCCCGAGCCTG-GG
* * *** **
17642467 TAGATTACGGCCATT
63 CAGATCACCATCAGC
* * * **
17642482 CGATCTTTTACCCCGAGCCTGAGGTAGAT-CA-CCATCTTCCGATCTTTTACCTTGAGCCTAGGG
1 CAATCTCTTACCCCGAGCCTGAGGCAGATGCAGCCA-C-TCCGATCTTTTACCCCGAGCCT-GGG
17642545 CAGATCACCATCAGC
63 CAGATCACCATCAGC
* * *
17642560 CAATCTCTTACCTCGAG-CTTAGGGTAGATTGCAGCCAC-CCGATCTTTTACCCCGAGCCTGGGC
1 CAATCTCTTACCCCGAGCCTGA-GGCAGA-TGCAGCCACTCCGATCTTTTACCCCGAGCCTGGGC
*
17642623 AGATCACCATCAGT
64 AGATCACCATCAGC
* * *
17642637 CAATCTCTTACCCCGAGCCT-AGGGCGGATTACAGCCA-TCCGATCTTTTACCCCGAGCCTAAGG
1 CAATCTCTTACCCCGAGCCTGA-GGCAGA-TGCAGCCACTCCGATCTTTTACCCCGAGCCT-GGG
* *
17642700 CAAATCACCATCAAC
63 CAGATCACCATCAGC
* * * *
17642715 CAATCTTTTACCTCGAGCCT-AGAGCAGATTGCAGCCAC-CCGATCTTTTACCCTGAGCTTGGGG
1 CAATCTCTTACCCCGAGCCTGAG-GCAGA-TGCAGCCACTCCGATCTTTTACCCCGAGCCT-GGG
*
17642778 CAGATCACCATCAAC
63 CAGATCACCATCAGC
* * * *
17642793 CCATCTCTTACCCCGAGCCTGGGGCGGATTGCAGCCA-TCCGATCTTTTACCCCGAGCTTGGGGC
1 CAATCTCTTACCCCGAGCCTGAGGCAGA-TGCAGCCACTCCGATCTTTTACCCCGAGCCT-GGGC
*
17642857 AGATCACAATCAGC
64 AGATCACCATCAGC
* ** * * *
17642871 CAATCTCTTACCCCGAGCCTAAGATAGATTGTAGCCAC-CCGATCTTTTACCCCAAGCTTGGGGC
1 CAATCTCTTACCCCGAGCCTGAGGCAGA-TGCAGCCACTCCGATCTTTTACCCCGAGCCT-GGGC
* *
17642935 AAATCACCATCAAC
64 AGATCACCATCAGC
* *
17642949 CAATATCTTACCTCGAGC
1 CAATCTCTTACCCCGAGC
17642967 TTGGGGTATA
Statistics
Matches: 414, Mismatches: 57, Indels: 27
0.83 0.11 0.05
Matches are distributed among these distances:
77 91 0.22
78 314 0.76
79 3 0.01
80 3 0.01
81 3 0.01
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (77 bp):
CAATCTCTTACCCCGAGCCTGAGGCAGATGCAGCCACTCCGATCTTTTACCCCGAGCCTGGGCAG
ATCACCATCAGC
Found at i:17642588 original size:117 final size:115
Alignment explanation
Indices: 17642368--17642890 Score: 339
Period size: 117 Copynumber: 4.5 Consensus size: 115
17642358 CCATTAGTCA
* * *
17642368 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCA--TT-CAATCTTTTACCCCGGGCCTGGGAA
1 ATCTTTTACCCCGAGCCT-GGGCAGA-T-CA-CCATCTTCCGATCTTTTACCCCGAGCCTGGGAA
* * * * **
17642430 GATCACCATCATCCGATCTTTTACCCTGAGCCTGAGGTAGATTACGGCCATTCG
62 GATCACCATCAGCCAATCTCTTACCCTGAGCCTGAGGTAGATTACAGCCACCCG
* ** *
17642484 ATCTTTTACCCCGAGCCTGAGGTAGATCACCATCTTCCGATCTTTTACCTTGAGCCTAGGGCAGA
1 ATCTTTTACCCCGAGCCTG-GGCAGATCACCATCTTCCGATCTTTTACCCCGAGCCT-GGGAAGA
* *
17642549 TCACCATCAGCCAATCTCTTA-CCTCGAG-CTTAGGGTAGATTGCAGCCACCCG
64 TCACCATCAGCCAATCTCTTACCCT-GAGCCTGA-GGTAGATTACAGCCACCCG
* * * **
17642601 ATCTTTTACCCCGAGCCTGGGCAGATCACCATCAGT-CAATCTCTTACCCCGAGCCTAGGGCGGA
1 ATCTTTTACCCCGAGCCTGGGCAGATCACCATC-TTCCGATCTTTTACCCCGAGCCT-GGGAAGA
* * * * * * * * * * * * *
17642665 TTA-CAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCA-TCAACCA
64 TCACCA-TCAGCCAATCTCTTACCCTGAGCCTGAGGTAGATTA-CAGCCACCCG
* * * * *
17642717 ATCTTTTACCTCGAGCCTAGAGCAGATTGCAGCCA-C--CCGATCTTTTACCCTGAGCTTGGGGC
1 ATCTTTTACCCCGAGCCT-GGGCAGA-T-CA-CCATCTTCCGATCTTTTACCCCGAGCCT-GGGA
* * * * ** * *
17642779 AGATCACCATCAACCCATCTCTTACCCCGAGCCTGGGGCGGATTGCAGCCATCCG
61 AGATCACCATCAGCCAATCTCTTACCCTGAGCCTGAGGTAGATTACAGCCACCCG
* * ** * *
17642834 ATCTTTTACCCCGAGCTTGGGGCAGATCACAATCAGCCAATCTCTTACCCCGAGCCT
1 ATCTTTTACCCCGAGCCT-GGGCAGATCACCATCTTCCGATCTTTTACCCCGAGCCT
17642891 AAGATAGATT
Statistics
Matches: 318, Mismatches: 67, Indels: 43
0.74 0.16 0.10
Matches are distributed among these distances:
113 3 0.01
114 4 0.01
115 9 0.03
116 125 0.39
117 168 0.53
118 3 0.01
119 3 0.01
120 3 0.01
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.24
Consensus pattern (115 bp):
ATCTTTTACCCCGAGCCTGGGCAGATCACCATCTTCCGATCTTTTACCCCGAGCCTGGGAAGATC
ACCATCAGCCAATCTCTTACCCTGAGCCTGAGGTAGATTACAGCCACCCG
Found at i:17642682 original size:194 final size:194
Alignment explanation
Indices: 17642323--17642743 Score: 540
Period size: 194 Copynumber: 2.2 Consensus size: 194
17642313 AGATTGAAGC
* * * * * * *
17642323 CATCCGATTTTTTACCCCGAACCTGGGGCAGATCACCATTAGTCAATCTCTTACCCCGAGCCTGG
1 CATCCGATCTTTTACCTCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAG
** * * *
17642388 GGCAGATTGCAGCCATTCAATCTTTTACCCCGGGCCTGGGAAGATCACCATCATCCGATCTTTTA
66 GGCAGATTGCAGCCACCCAATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCAATCTCTTA
* * * * * * *
17642453 CCCTGAGCCTGAGGTAGATTACGGCCATTCGATCTTTTACCCCGAGCCTGAGGTAGATCACCAT
131 CCCCGAGCCTGAGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCAT
* * * *
17642517 CTTCCGATCTTTTACCTTGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCTTAG
1 CATCCGATCTTTTACCTCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAG
* * *
17642582 GGTAGATTGCAGCCACCCGATCTTTTACCCCGAGCCTGGGCAGATCACCATCAGT-CAATCTCTT
66 GGCAGATTGCAGCCACCCAATCTTTTACCCCGAGCCTGGGAAGATCACCATCA-TCCAATCTCTT
*
17642646 ACCCCGAGCCT-AGGGCGGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCA
130 ACCCCGAGCCTGA-GGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCA
17642710 T
194 T
* * *
17642711 CAACCAATCTTTTACCTCGAGCCTAGAGCAGAT
1 CATCCGATCTTTTACCTCGAGCCTAGGGCAGAT
17642744 TGCAGCCACC
Statistics
Matches: 193, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
193 1 0.01
194 191 0.99
195 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (194 bp):
CATCCGATCTTTTACCTCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAG
GGCAGATTGCAGCCACCCAATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCAATCTCTTA
CCCCGAGCCTGAGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCAT
Found at i:17642806 original size:194 final size:193
Alignment explanation
Indices: 17642332--17642815 Score: 476
Period size: 194 Copynumber: 2.5 Consensus size: 193
17642322 CCATCCGATT
* * * * * * * * * **
17642332 TTTTACCCCGAACCTGGGGCAGATCACCATTAGTCAATCTCTTACCCCGAGCCTGGGGCAGATTG
1 TTTTACCTCGAGCCTAGAGCAGATCACCATCA-CCAATCTCTTACCTCGAGCTTAGGGCAGATAC
* ** * * * * *
17642397 CAGCCATTCAATCTTTTACCCCGGGCCTGGGAAGATCACCATCATCCGATCTTTTACCCTGAGCC
65 CAGCAACCCGATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCAATCTCTTACCCCGAGCC
* * * * * * ** *
17642462 TGAGGTAGATTACGGCCATTCGATCTTTTACCCCGAGCCTGAGGTAGATCACCATCTTCCGATC
130 TGAGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAACCAATC
* * * **
17642526 TTTTACCTTGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCTTAGGGTAGATTG
1 TTTTACCTCGAGCCTAGAGCAGATCACCATCA-CCAATCTCTTACCTCGAGCTTAGGGCAGATAC
* *
17642591 CAGCCACCCGATCTTTTACCCCGAGCCTGGGCAGATCACCATCAGT-CAATCTCTTACCCCGAGC
65 CAGCAACCCGATCTTTTACCCCGAGCCTGGGAAGATCACCATCA-TCCAATCTCTTACCCCGAGC
*
17642655 CT-AGGGCGGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAACCAAT
129 CTGA-GGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAACCAAT
17642719 C
193 C
* * *
17642720 TTTTACCTCGAGCCTAGAGCAGATTGCAGCCA-C-CCGATCTTTTACC-CTGAGCTTGGGGCAGA
1 TTTTACCTCGAGCCTAGAGCAGA-T-CA-CCATCACCAATCTCTTACCTC-GAGCTTAGGGCAGA
* *
17642782 TCACCATCAACCC-ATCTCTTACCCCGAGCCTGGG
62 T-ACCAGCAACCCGATCTTTTACCCCGAGCCTGGG
17642816 GCGGATTGCA
Statistics
Matches: 244, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
193 2 0.01
194 227 0.93
195 9 0.04
196 3 0.01
197 3 0.01
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.25
Consensus pattern (193 bp):
TTTTACCTCGAGCCTAGAGCAGATCACCATCACCAATCTCTTACCTCGAGCTTAGGGCAGATACC
AGCAACCCGATCTTTTACCCCGAGCCTGGGAAGATCACCATCATCCAATCTCTTACCCCGAGCCT
GAGGCAGATTACAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAACCAATC
Found at i:17642842 original size:156 final size:156
Alignment explanation
Indices: 17642519--17642972 Score: 651
Period size: 156 Copynumber: 2.9 Consensus size: 156
17642509 ATCACCATCT
** * *
17642519 TCCGATCTTTTACCTTGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCTTAGGG
1 TCCGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCCTAGAG
* **
17642584 TAGATTGCAGCCACCCGATCTTTTACCCCGAGCCT-GGGCAGATCACCATCAGTCAATCTCTTAC
66 TAGATTGCAGCCACCCGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAACCAATCTCTTAC
*
17642648 CCCGAGCCTAGGGCGGATTACAGCCA
131 CCCGAGCCTGGGGCGGATTACAGCCA
* * * *
17642674 TCCGATCTTTTACCCCGAGCCTAAGGCAAATCACCATCAACCAATCTTTTACCTCGAGCCTAGAG
1 TCCGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCCTAGAG
* * *
17642739 CAGATTGCAGCCACCCGATCTTTTACCCTGAGCTTGGGGCAGATCACCATCAACCCATCTCTTAC
66 TAGATTGCAGCCACCCGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAACCAATCTCTTAC
*
17642804 CCCGAGCCTGGGGCGGATTGCAGCCA
131 CCCGAGCCTGGGGCGGATTACAGCCA
* * * *
17642830 TCCGATCTTTTACCCCGAGCTTGGGGCAGATCACAATCAGCCAATCTCTTACCCCGAGCCTA-AG
1 TCCGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCCTAGAG
* * * *
17642894 ATAGATTGTAGCCACCCGATCTTTTACCCCAAGCTTGGGGCAAATCACCATCAACCAATATCTTA
66 -TAGATTGCAGCCACCCGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAACCAATCTCTTA
* *
17642959 CCTCGAGCTTGGGG
130 CCCCGAGCCTGGGG
17642973 TATATTGCAA
Statistics
Matches: 264, Mismatches: 33, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
155 91 0.34
156 173 0.66
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (156 bp):
TCCGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCCTAGAG
TAGATTGCAGCCACCCGATCTTTTACCCCGAGCTTGGGGCAGATCACCATCAACCAATCTCTTAC
CCCGAGCCTGGGGCGGATTACAGCCA
Found at i:17645188 original size:30 final size:30
Alignment explanation
Indices: 17645145--17645434 Score: 336
Period size: 30 Copynumber: 9.7 Consensus size: 30
17645135 TTGTCCCCTG
* *
17645145 AACTTTCCAAAAATCACATTTTGACCATTA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* *
17645175 AATTTTTCAAAAATTACATTTTGACCCTTA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* *
17645205 AAC-TTCTCAAAAATTACATTTTAACCCCTA
1 AACTTTC-CAAAAATTACATTTTGACCCTTA
* *
17645235 AACTTTCCAAAAATCACATTTTGACCCTCA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
*
17645265 AACTTTCCAAAATTTACATTTTGACCCTTA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* *
17645295 AACTTTCCAAAAATCACATTTTGACCCCTA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* *
17645325 AACTTTCCAAAAATTACATTTTAACCCCTA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* *
17645355 AACTTTACAAAAATTAC-TATTTGACCCCTA
1 AACTTTCCAAAAATTACAT-TTTGACCCTTA
* ** *
17645385 AACTTTCCTAAAATCGCATTTTAACCC-TA
1 AACTTTCCAAAAATTACATTTTGACCCTTA
* * *
17645414 AACTCTCCGAAACTT-CATTTT
1 AACTTTCCAAAAATTACATTTT
17645435 TCGACCCCTT
Statistics
Matches: 225, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
28 6 0.03
29 16 0.07
30 199 0.88
31 4 0.02
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.35
Consensus pattern (30 bp):
AACTTTCCAAAAATTACATTTTGACCCTTA
Found at i:17645292 original size:90 final size:90
Alignment explanation
Indices: 17645139--17645417 Score: 377
Period size: 90 Copynumber: 3.1 Consensus size: 90
17645129 GCCCAGTTGT
* * * * *
17645139 CCCCTGAACTTTCCAAAAATCACATTTTGACCATTAAATTTTTCAAAAATTACATTTTGACCCTT
1 CCCCTAAACTTTCCAAAAATCACATTTTGACCCTCAAACTTTACAAAAATTACATTTTGACCCTT
*
17645204 AAAC-TTCTCAAAAATTACATTTTAA
66 AAACTTTC-CAAAAATCACATTTTAA
* *
17645229 CCCCTAAACTTTCCAAAAATCACATTTTGACCCTCAAACTTTCCAAAATTTACATTTTGACCCTT
1 CCCCTAAACTTTCCAAAAATCACATTTTGACCCTCAAACTTTACAAAAATTACATTTTGACCCTT
*
17645294 AAACTTTCCAAAAATCACATTTTGA
66 AAACTTTCCAAAAATCACATTTTAA
* *
17645319 CCCCTAAACTTTCCAAAAATTACATTTTAACCC-CTAAACTTTACAAAAATTAC-TATTTGACCC
1 CCCCTAAACTTTCCAAAAATCACATTTTGACCCTC-AAACTTTACAAAAATTACAT-TTTGACCC
* * *
17645382 CTAAACTTTCCTAAAATCGCATTTTAA
64 TTAAACTTTCCAAAAATCACATTTTAA
17645409 -CCCTAAACT
1 CCCCTAAACT
17645418 CTCCGAAACT
Statistics
Matches: 170, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
89 11 0.06
90 156 0.92
91 3 0.02
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (90 bp):
CCCCTAAACTTTCCAAAAATCACATTTTGACCCTCAAACTTTACAAAAATTACATTTTGACCCTT
AAACTTTCCAAAAATCACATTTTAA
Found at i:17646808 original size:93 final size:95
Alignment explanation
Indices: 17646702--17646877 Score: 250
Period size: 93 Copynumber: 1.9 Consensus size: 95
17646692 AATATAATTC
* * * *
17646702 TTTTTTGGTTAAAATT-TCCTCCATAGCAATTTCATGATAAAAGTAATAATA-TTTTATAACAAT
1 TTTTTTGGTTAAAATTGT-CTCCACAGAAATTTCATGATAAAAATAATAATATTTTTATAACAAG
*
17646765 ATGACACAATAGGT-AAAACTGTGGTATCAA
65 ACGACACAATAGGTGAAAACTGTGGTATCAA
* *
17646795 TTTTTTTGTTAAAATTGTCTCCACATAAATTTCATGATAAAAATAATAATATTTTTATAACAAGA
1 TTTTTTGGTTAAAATTGTCTCCACAGAAATTTCATGATAAAAATAATAATATTTTTATAACAAGA
*
17646860 CGACACAATGGGTGAAAA
66 CGACACAATAGGTGAAAA
17646878 TAATAATATT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
93 44 0.61
94 24 0.33
95 4 0.06
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (95 bp):
TTTTTTGGTTAAAATTGTCTCCACAGAAATTTCATGATAAAAATAATAATATTTTTATAACAAGA
CGACACAATAGGTGAAAACTGTGGTATCAA
Found at i:17648452 original size:52 final size:51
Alignment explanation
Indices: 17648336--17648452 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 51
17648326 TTCAGGTGGC
* *
17648336 GGTTTCAAGATATAAAATAATAATTTTTTTGTAACTTCCATCTTACGTCGT
1 GGTTTCAAGATATAAAATAATAATTTTTTTGAAACTTCCATCTTACGACGT
**
17648387 GGTTTCAAGATATAAAATAATTTTTTATTTTGAAACTGT-C-TCTTTAC-ACGAT
1 GGTTTCAAGATATAAAATAATAATTT-TTTTGAAACT-TCCATC-TTACGACG-T
*
17648439 GGTTTCAATATATA
1 GGTTTCAAGATATA
17648453 CAAAAAAATT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
51 28 0.49
52 28 0.49
53 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (51 bp):
GGTTTCAAGATATAAAATAATAATTTTTTTGAAACTTCCATCTTACGACGT
Found at i:17649928 original size:796 final size:792
Alignment explanation
Indices: 17648398--17649960 Score: 1924
Period size: 796 Copynumber: 2.0 Consensus size: 792
17648388 GTTTCAAGAT
* * * * **
17648398 ATAAAATAATTTTTTATTTTGAAACTGTCTCTTTACACGATGGTTTCAATATATACAAAAAAATT
1 ATAAAATAATTTTTTATTTTAAAACTGCCTCTTTACACGACGGTTTCAATAGATACAAAAAAAAA
* *
17648463 TATTTCTAAAAGTGCCTTCTTATACCGTGATTTCAAATTAATAAAAAGAAAATATTTTTTCTAAG
66 TATTTCTAAAAGTGCC-TCTTATACCGTGATTTCAAATTAAT-AAAAGAAAATATATTTTCTAAA
* * * * *
17648528 CTAGCTGGGTTAAGGGGTGGTCAGACCCTTACCCAACTATCAATTGAAACATCCATTGTGCAAAA
129 ATAGATGGGTTAAGGGGTGATCAAACCCTTACCCAACTATCAATTGAAACATACATTGTGCAAAA
*
17648593 ACAAATCAAATTTTAATAGTTTTTATTAGATCTACTCCTTTCAATCCATCAAACCCAGTTCCCAA
194 ACAAATCAAATTTTAATAGTTTTTATTAGATCTACTCCGTTCAATCCATCAAACCCAGTTCCCAA
* * ** * *
17648658 TAACATCATGTCACATGACACTTTAATAAACTATTTTTTTTTTAAATTGACATTCAGGTGACAGT
259 CAACAGCACATCACATGACACTTTAATAAACTATTTTTTTCTGAAATTGACATTCAGGTGACAGT
* *
17648723 TTCAAACTCCAAGATTCTAAATATAAAAACAAAATTTCGAAAGTACCTAATGTTATCTATATGAT
324 TTCAAACTCCAAGATTCTAAATATAAAAACAAAATTTCGAAAGTACCTAACGTAATCTATATGAT
** *
17648788 TGCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTTTCTATTTAAATTACTCTCCAT
389 TGCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTCGCTATTTAAACTACTCTCCAT
* * *
17648853 TTTGTTGAAGTAATTTATTTTTTAGTTTTTTTAAATATTTTTTTAATTTAGTTAATTTTTACTAT
454 TTTGTTGAAGAAATTTATTTTTTAGATTTTTTAAATATTTTTTTAATTTAGTTAATTTTCACTAT
* * * * *
17648918 CTAACACGTAATGTTATTTGTGTGCAACTGTTATATTTTTTGTTATTTTTTCTGAATGTGCAGGT
519 CTAAAACATAATGCTATTTGTATGCAACTGTTATATTTTTTGTTATTTTTTATGAATGTGCAGGT
17648983 TGGTAAGAGAAGATAGATCGTAAATTCAATGTTGTAGCACATTACAAGGGACAAACTCACTATAT
584 TGGTAAGAGAAGATAGATCGTAAATTCAATGTTGTAGCACATTACAAGGGACAAACTCACTATAT
* * * *
17649048 CAAAGACACCAATTTGAATGGCAATAAATAAAAGTGGAGGGACCAAATTCGCACAAATAAAAAAT
649 CAAAGACACCAATTTGAATGGCAATAAATAAAAGTAGAGGGACAAAATCCGCACAAATAAAAAAG
*
17649113 TACAAGGACTATTCTTAGAAATTAAACAAAAATAATACTTGTTTCACTCGACTCTGTCATGCGGT
714 TACAAGGACTATTCTTAGAAATTAAACAAAAATAATACTTGTATCACTCGACTCTGTCATGCGGT
17649178 TTTTTTTGTATAAA
779 TTTTTTTGTATAAA
17649192 ATAACAATAATTTTTTTATTTTAAAACTGCCATC-TTACACG-CGGTTTC-A-AGATACAAAAAA
1 ATAA-AATAA-TTTTTTATTTTAAAACTGCC-TCTTTACACGACGGTTTCAATAGATACAAAAAA
* *
17649253 AAATATTTCTAAAAGTAGCC-CTTATACTGCTG-TTTCAAATTAAT-AAA-AATATATATTTTCT
63 AAATATTTCTAAAAGT-GCCTCTTATACCG-TGATTTCAAATTAATAAAAGAAAATATATTTTCT
* * * *
17649314 AAAATAGATGGGTTAAGGGGTTATCAAACCCTTACTCAGCTGTCAATTGAAACATACA-TGT-CA
126 AAAATAGATGGGTTAAGGGGTGATCAAACCCTTACCCAACTATCAATTGAAACATACATTGTGCA
* * * ** *
17649377 CAAAA-AAATTCAAATTTTAA-ATTTTTTTATTCGATTTACTCCGTTCTTTCCATCAAACTCA-T
191 -AAAACAAA-TCAAATTTTAATA-GTTTTTATTAGATCTACTCCGTTCAATCCATCAAACCCAGT
* * * * *
17649439 CTCCCCAACAATAGCACATCACGTGACACTTTAATGAATTATTTTTTTCTGAAATTGATATGTCC
253 -T-CCCAACAACAGCACATCACATGACACTTTAATAAACTATTTTTTTCTGAAATTGACAT-T-C
*** * ** * * *
17649504 AGGTGGTGGTTTCAAACTCCGAGATTCTAAA-ATTGGAAATATAATTAT-GAGAGTACCTAACGT
314 AGGTGACAGTTTCAAACTCCAAGATTCTAAATA-TAAAAACAAAATT-TCGAAAGTACCTAACGT
* * ***
17649567 AATCTATATGATTGCCACCTCTATTTTTTTGACAAAAATATTCTCACAATTTCTTCGCTATTTAA
377 AATCTATATGATTGCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTCGCTATTTAA
* *
17649632 ACTGCTCTCCATTTTGTTGAAGAAATTTTGTTTTTCTTA-ATTTTTTAAAT-TATTTTTTAATTT
442 ACTACTCTCCATTTTGTTGAAGAAA-TTT-ATTTT-TTAGATTTTTTAAATAT-TTTTTTAATTT
*
17649695 AGTTAATTTTCACTATC-AAGAACTATAATGCTATTTGTATGCAATTGTTATATTCTTTTGTTAT
503 AGTTAATTTTCACTATCTAA-AAC-ATAATGCTATTTGTATGCAACTGTTATATT-TTTTGTTA-
* * * * * * *
17649759 TTTTTTATGAATGTGCAGGTTGTTAGGAGAATATGGATCGTAAATTCAATGTTGTGGCCCATTAT
564 TTTTTTATGAATGTGCAGGTTGGTAAGAGAAGATAGATCGTAAATTCAATGTTGTAGCACATTAC
* * * * * *
17649824 AATGGG-CAAACTCACCTATAT-AATGGCACCGATTTGAATGGTAGTAAATAAAAGTAGAGGGAT
629 AA-GGGACAAACTCA-CTATATCAAAGACACCAATTTGAATGGCAATAAATAAAAGTAGAGGGAC
* ** * * * *
17649887 AAAATCCGCACAAATCAGTAAGTAGAAGGACTATTCTTAGAATTTAATCAAAAATAATATTTGTA
692 AAAATCCGCACAAATAAAAAAGTACAAGGACTATTCTTAGAAATTAAACAAAAATAATACTTGTA
17649952 TCACTCGAC
757 TCACTCGAC
17649961 AATGACACAT
Statistics
Matches: 653, Mismatches: 92, Indels: 46
0.83 0.12 0.06
Matches are distributed among these distances:
787 7 0.01
788 51 0.08
789 107 0.16
790 5 0.01
791 129 0.20
792 27 0.04
793 70 0.11
794 37 0.06
795 19 0.03
796 190 0.29
797 11 0.02
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (792 bp):
ATAAAATAATTTTTTATTTTAAAACTGCCTCTTTACACGACGGTTTCAATAGATACAAAAAAAAA
TATTTCTAAAAGTGCCTCTTATACCGTGATTTCAAATTAATAAAAGAAAATATATTTTCTAAAAT
AGATGGGTTAAGGGGTGATCAAACCCTTACCCAACTATCAATTGAAACATACATTGTGCAAAAAC
AAATCAAATTTTAATAGTTTTTATTAGATCTACTCCGTTCAATCCATCAAACCCAGTTCCCAACA
ACAGCACATCACATGACACTTTAATAAACTATTTTTTTCTGAAATTGACATTCAGGTGACAGTTT
CAAACTCCAAGATTCTAAATATAAAAACAAAATTTCGAAAGTACCTAACGTAATCTATATGATTG
CCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTCGCTATTTAAACTACTCTCCATTT
TGTTGAAGAAATTTATTTTTTAGATTTTTTAAATATTTTTTTAATTTAGTTAATTTTCACTATCT
AAAACATAATGCTATTTGTATGCAACTGTTATATTTTTTGTTATTTTTTATGAATGTGCAGGTTG
GTAAGAGAAGATAGATCGTAAATTCAATGTTGTAGCACATTACAAGGGACAAACTCACTATATCA
AAGACACCAATTTGAATGGCAATAAATAAAAGTAGAGGGACAAAATCCGCACAAATAAAAAAGTA
CAAGGACTATTCTTAGAAATTAAACAAAAATAATACTTGTATCACTCGACTCTGTCATGCGGTTT
TTTTTGTATAAA
Found at i:17650766 original size:833 final size:840
Alignment explanation
Indices: 17649233--17650790 Score: 2067
Period size: 833 Copynumber: 1.9 Consensus size: 840
17649223 ATCTTACACG
* *
17649233 CGGTTTCAAGATACAAAAAAAAATATTTCTAAAAGTAGCCCTTATACTGCTGTTTCAAATTAATA
1 CGGTTTCAAGATACAAAAAAAAATATTTCTAAAAGTAGCCCTTATACCGCGGTTTCAAATTAATA
* * * *
17649298 AAAATATATATTTTCTAAAATAGATGGGTTAAGGGGTTATCAAACCCTTACTCAGCTGTCAATTG
66 AAAAAATATATTTTCTAAAATAGATGGGTTAAGGGGTGACCAAACCCTTACCCAGCTGTCAATTG
** * **
17649363 AAACATACATGTCACAAAAAAATTCAAATTTTAAATTTTTTTATTCGATTTACTCCGTTCTTTCC
131 AAACATACATGTCACAAAAAAATTCAAATTTTAAAAGTTTTTATTCGATCTACTCCGTTCAATCC
* * * * * *
17649428 ATCAAACTCATCTCCCCAACAATAGCACATCACGTGACACTTTAATGAATTATTTTTTTCTGAAA
196 ATAAAAATCATCT-CCCAACAACAGCACATCACATAACACTTTAATAAATTA-TTTTTTCTGAAA
* * * * * * * * *
17649493 TTGATATGTCCAGGTGGTGGTTTCAAACTCCGAGATTCTAAAATTGGAAATATAATTATGAGAGT
259 TAGACATGTCCAAGTGGCGGTTTCAAACTCCGAAATTCTAAAATTGAAAATAAAATTACGAAAGT
* * * ***
17649558 ACCTAACGTAATCTATATGATTGCCACCTCTATTTTTTTGACAAAAATATTCTCACAATTTCTTC
324 ACCTAACGTAATCTATATGACTGCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTC
* * *
17649623 GCTATTTAAACTGCTCTCCATTTTGTTGAAGAAATTTTGTTTTTCTTAATTTTTTAAATTATTTT
389 GCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTTTGTTTTTCTTAATTTTTTAAATTATTTT
* * * *
17649688 TTAATTTAGTTAATTTTCACTATCAAGAACTATAATGCTATTTGTATGCAATTGTTATATTCTTT
454 TTAATTAAGTTAATTTTCACTATCAAGAACAATAATGCTATTTCTATGCAATTGTTAAATTCTTT
* *
17649753 TGTTATTTTTTTATGAATGTGCAGGTTGTTAGGAGAATATGGATCGTAAATTCAATGTTGTGGCC
519 TGTTATTTTTTTAT--ATGTGCAGGTTGGTAGGAGAAAATGGATCGTAAATTCAATGTTGTGGCC
* * ** *** *
17649818 CATTATAATGGGCAAACTCACCTATATAATGGCACCGATTTGAATGGTAGTAAATAAAAGTAGAG
582 CATTACAATAGAAAAACTCACCTATATAAAAACACCAATTTGAATGGTAGTAAATAAAAGTAGAG
* * * * *
17649883 GGATAAAATCCGCACAAATCAGTAAGTAGAAGGACTATTCTTAGAATTTAATCAAAAATAATATT
647 GGACAAAATCCGCACAAATCAATAAGTACAAGGACTATTCTTAAAATTTAAACAAAAATAATATT
17649948 TGTATCACTCGACAATGACACATGGTGCTCTTGATATAAAAAAATAATAATTTTTTTAAAATTGT
712 TGTATCACTCGACAATGACACATGGTGCTCTTGATATAAAAAAATAATAATTTTTTTAAAATTGT
17650013 CATCTTACGCGACGATTTTAAGATGTAAAATAATTTTTTATTTTGAAAGTATCTCTTTACATGA
777 CATCTTACGCGACGATTTTAAGATGTAAAATAATTTTTTATTTTGAAAGTATCTCTTTACATGA
* *
17650077 CGGTTTCAAGATATAGAAAAAAACTTATTTCTAAAAGT-GCCCTCTTATACCGCGGTTTCAAATT
1 CGGTTTCAAGATACA-AAAAAAA-ATATTTCTAAAAGTAG-CC-CTTATACCGCGGTTTCAAATT
* * * *
17650141 AATAAAAAAATAT-TTTTCTAAGATAGCTGGGTT-AGGGGTGGCCAGACCCTTACCCAGCTGTCA
62 AATAAAAAAATATATTTTCTAAAATAGATGGGTTAAGGGGTGACCAAACCCTTACCCAGCTGTCA
* * * *
17650204 GTTGAAACATCCAT-TGCACAAAAAAATTCAAATTTTAAAAGTTTTTATTTGATCTACTTTC-TT
127 ATTGAAACATACATGT-CACAAAAAAATTCAAATTTTAAAAGTTTTTATTCGATCTAC-TCCGTT
* * **
17650267 CAATCCATAAAAATTAGTCT-CCAACAACATCATGTCACATAACACTTTAATAAATTA-TTTTT-
190 CAATCCATAAAAATCA-TCTCCCAACAACAGCACATCACATAACACTTTAATAAATTATTTTTTC
*
17650329 TGAAATAGACAT-T-CAAGTGGCGGTTTCAAACTTC-AAATTTCTAAAATTGAAAATAAAATTAC
254 TGAAATAGACATGTCCAAGTGGCGGTTTCAAACTCCGAAA-TTCTAAAATTGAAAATAAAATTAC
*
17650391 GAAAGTATCC-AATGTAATCTATATGACTGCCACCTCCATTTCTCCCACAAAAATATTCTCACAA
318 GAAAGTA-CCTAACGTAATCTATATGACTGCCACCTCCATTTCTCCCACAAAAATATTCTCACAA
* * * *
17650455 TTTCTTCTCTATTTAAACTACCCTCCATTTTGTTGAAGTAAGTTT-TTTTT-TT-GTTTCTTTAG
382 TTTCTTCGCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTTTGTTTTTCTTAATTT-TTTAA
* * *
17650517 A-TATTTTTTAATTAAGTTAATTTTTACTATTTAAG-ACAATAATGTTATTTCTATGCAATTGTT
446 ATTATTTTTTAATTAAGTTAATTTTCACTA-TCAAGAACAATAATGCTATTTCTATGCAATTGTT
*
17650580 AAAATT-TTTTGTTATTTTTTTAT-TGTGCAGGTTGGTAGGCGAAAATGGATCGTAAATTCAATG
510 -AAATTCTTTTGTTATTTTTTTATATGTGCAGGTTGGTAGGAGAAAATGGATCGTAAATTCAATG
* *
17650643 TTGTGGTCTATTACAATAGAAAAACTCA-CTATATCAAAAACACCAATTTGAATGGTAGTAAATA
574 TTGTGGCCCATTACAATAGAAAAACTCACCTATAT-AAAAACACCAATTTGAATGGTAGTAAATA
* * *
17650707 AAAGTGGAGGGACCAAATCTGCACAAATCAATAAGTACAAGGACTATTCTTAAAATTTAAACAAA
638 AAAGTAGAGGGACAAAATCCGCACAAATCAATAAGTACAAGGACTATTCTTAAAATTTAAACAAA
*
17650772 AATAATATTTGTTTCACTC
703 AATAATATTTGTATCACTC
17650791 AACTCTGTCA
Statistics
Matches: 617, Mismatches: 84, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
832 6 0.01
833 159 0.26
836 71 0.12
837 15 0.02
838 7 0.01
839 132 0.21
840 3 0.00
841 10 0.02
842 5 0.01
844 45 0.07
845 95 0.15
846 38 0.06
847 31 0.05
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (840 bp):
CGGTTTCAAGATACAAAAAAAAATATTTCTAAAAGTAGCCCTTATACCGCGGTTTCAAATTAATA
AAAAAATATATTTTCTAAAATAGATGGGTTAAGGGGTGACCAAACCCTTACCCAGCTGTCAATTG
AAACATACATGTCACAAAAAAATTCAAATTTTAAAAGTTTTTATTCGATCTACTCCGTTCAATCC
ATAAAAATCATCTCCCAACAACAGCACATCACATAACACTTTAATAAATTATTTTTTCTGAAATA
GACATGTCCAAGTGGCGGTTTCAAACTCCGAAATTCTAAAATTGAAAATAAAATTACGAAAGTAC
CTAACGTAATCTATATGACTGCCACCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTCGC
TATTTAAACTACCCTCCATTTTGTTGAAGAAAGTTTGTTTTTCTTAATTTTTTAAATTATTTTTT
AATTAAGTTAATTTTCACTATCAAGAACAATAATGCTATTTCTATGCAATTGTTAAATTCTTTTG
TTATTTTTTTATATGTGCAGGTTGGTAGGAGAAAATGGATCGTAAATTCAATGTTGTGGCCCATT
ACAATAGAAAAACTCACCTATATAAAAACACCAATTTGAATGGTAGTAAATAAAAGTAGAGGGAC
AAAATCCGCACAAATCAATAAGTACAAGGACTATTCTTAAAATTTAAACAAAAATAATATTTGTA
TCACTCGACAATGACACATGGTGCTCTTGATATAAAAAAATAATAATTTTTTTAAAATTGTCATC
TTACGCGACGATTTTAAGATGTAAAATAATTTTTTATTTTGAAAGTATCTCTTTACATGA
Found at i:17651278 original size:224 final size:224
Alignment explanation
Indices: 17650917--17651348 Score: 575
Period size: 224 Copynumber: 1.9 Consensus size: 224
17650907 TATATCGCGG
* * * *
17650917 TTTCAAATTAGCTGGGTTAGGGGGTGATCAAACCCTTACGCAACTGTCAATGGAAATATCCATTG
1 TTTCAAAATAGCTGGGTTAGAGGGTGATCAAACCCTTACCCAACTGTCAATGGAAACATCCATTG
* * * * * *
17650982 GCAAACAAATTCAAATTTTAAAAGCTTTTATTCAATCTACTCCCTTCAGTCCATCAAACCCAGTC
66 ACAAAAAAAATCAAATTTTAAAAGCTTTTATTCAACCTACTCCCTTCAATCCATCAAACCCAATC
* * *
17651047 CCCAACAACATCACGTCACATGACAGTTTAAT-AA-T-TTTTTTT-TGAAATTGACATTCAAGGG
131 CCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGAAATTAACATT-AAGGG
17651108 ACGATTTCAAACTCAATAAAAATATATATT
195 ACGATTTCAAACTCAATAAAAATATATATT
* * ** * *
17651138 TTTCTAAAATAGCTGGGTTAGAGGGTGGTCAGACCCTTACCCAGTTGTTAATTGAAACATCCATT
1 TTTC-AAAATAGCTGGGTTAGAGGGTGATCAAACCCTTACCCAACTGTCAATGGAAACATCCATT
* * *
17651203 GCACAAAAAAAAATCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAATCCATCAAACCCA
65 G-AC-AAAAAAAATCAAATTTTAAAAGCTTTTATTCAACCTACTCCCTTCAATCCATCAAACCCA
*
17651268 ATCCCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGAAATTAACATTTAG
128 ATCCCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGAAATTAACATTAAG
* *
17651333 GGGCGGTTTCAAACTC
193 GGACGATTTCAAACTC
17651349 CAAGATTCTA
Statistics
Matches: 179, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
221 4 0.02
222 51 0.28
223 1 0.01
224 85 0.47
225 2 0.01
226 1 0.01
227 23 0.13
228 12 0.07
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (224 bp):
TTTCAAAATAGCTGGGTTAGAGGGTGATCAAACCCTTACCCAACTGTCAATGGAAACATCCATTG
ACAAAAAAAATCAAATTTTAAAAGCTTTTATTCAACCTACTCCCTTCAATCCATCAAACCCAATC
CCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGAAATTAACATTAAGGGA
CGATTTCAAACTCAATAAAAATATATATT
Found at i:17652803 original size:848 final size:833
Alignment explanation
Indices: 17651125--17652903 Score: 2304
Period size: 848 Copynumber: 2.1 Consensus size: 833
17651115 CAAACTCAAT
** * ** *
17651125 AAAAATATATATTTTTCTAAAATAGCTGGGTTAGAGGGTGGTCAGACCCTTACCCAGTTGTTAAT
1 AAAAATATATATTTTTCTAAAATAATTGGGTTAG-GGGCGACCAGACCCTTACCCAGTTGTCAAT
* *
17651190 TGAAACATCCATTGCACAAAAAAAAATCAAATTTTAAAAGTTTTTATTCGACCTACTTCCTTCAA
65 TGAAACATCCATTGCACAAAAAAAATTCAAAATTTAAAAGTTTTTATTCGACCTACTTCCTTCAA
* *
17651255 TCCATCAAACCCAATCCCCAACAAAATCACGTCACATGACACTTTAATAAATTATTTTTTTCTGA
130 TCCATCAAACCCAATCCCCAACAAAATCACATCACATGACACTTTAATAAATCATTTTTTTCTGA
*
17651320 AATTAACATTTAGGGGCGGTTTCAAACTCCAAGATTCTAAAATTGAAAATAAAATTACGAAACTA
195 AATTAACATTTAGGGACGGTTTCAAACTCCAAGATTCTAAAATTGAAAATAAAATTACGAAACTA
* *
17651385 CCAATGTAATCTATATGACTCCCTCCTCCATTTCTCCCACAAAAATATTCTCACAATTTCTTCTC
260 CCAATGTAATCTATATGACTCCATCCTCCATTTCTCACACAAAAATATTCTCACAATTTCTTCTC
* ** * **
17651450 TATTTAAGCCACTCTCTTTTTTGTTGAAGTAAGTTTGCTTTTCTTAGTTTATTTTTAAATGTCTT
325 TATTTAAACCACTCTCCATTTTGTTGAAGTAAGTTTGCTTTTCTCAGTTTATTTAGAAATGTCTT
* *
17651515 TTTTTAATTTAGTTAAGGCGATAGTGTTATTTGTATGCAATTGTTATATTTTTAGATATTTTTTC
390 TTTTTAATTTAGTTAAGGCGATAATGTTATTTGTATGCAATTGTTAAATTTTTAGATATTTTTTC
* *
17651580 TCAATGTGCAAATTGGTAGGAGACCATGGACTGTAAATTCAATGTTGTGGCCCATTATAATGGAC
455 TCAATGTGCAAATTGGTAGGAGAACATGGACTGTAAATTCAATGTTGTGGCCCATTACAATGGAC
* * * *
17651645 AAGCTCAATATATAAAAGATAGATCAATTTGAATGATAGTAAATAAAAGTAGAGGGACCAAATCC
520 AAACTCAATATATAAAAGA-ACACCAATTAGAATGATAGTAAATAAAAGTAGAGGGACCAAATCC
** *
17651710 GCACAAATCAATAAGTACAAGGACTATTCTTAGAATTTAGTCAAAAATAATTTTTGTTTCACTCG
584 GCACAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCAAAAATAATATTTGTTTCACTCG
* *
17651775 ACAATGGCACACGACGTTCTTGATATAAAAAAAATAATTTTTTTTTATTTTAAAACTGTCATCTT
649 ACAATGACACACGACGTTCTTGATATAAAAAAAATAA--TTTATTTATTTTAAAACTGTCATCTT
*
17651840 ATGTGGCGGTTTCAAAATATAAAATAATTTTTAATTTGAAAGTGTATCTATAAATGGCGGTTCTA
712 ATGTGGCGATTTCAAAATATAAAATAATTTTTAATTTGAAAGTGTATCTATAAATGGCGGTTCTA
*
17651905 AAATATACAAAAAAGTTATTTTTAAAAATGTCCCTTATATCGCAGTTTCAAAATAAG
777 AAATATACAAAAAAGTTATTTCTAAAAATGTCCCTTATATCGCAGTTTCAAAATAAG
*
17651962 AAAAATATAT-TTTTTCTTAAATAATTGGGTTAGTGGGCGACCAGACCCTTACCCAGTTGTCAAT
1 AAAAATATATATTTTTCTAAAATAATTGGGTTAG-GGGCGACCAGACCCTTACCCAGTTGTCAAT
* ** * *
17652026 TGATACATCCATTGCACAAAAAAAATTCAAAATTTAATTGTTTTTATTCTATCTAC-TCCATTCA
65 TGAAACATCCATTGCACAAAAAAAATTCAAAATTTAAAAGTTTTTATTCGACCTACTTCC-TTCA
* ** * * * *
17652090 GTCCATCAAACTTAGTCTCCAACAACATCACATCATATGACACTTTAATAAATCATTTTTTTTCT
129 ATCCATCAAACCCAATCCCCAACAAAATCACATCACATGACACTTTAATAAATCA-TTTTTTTCT
* ** *
17652155 GAAATTGACATGTTAGGTGACGGTTTCAAACTCTGAGATTCTAAAATTGAAAATAAAATTATGAA
193 GAAATTAACAT-TTAGG-GACGGTTTCAAACTCCAAGATTCTAAAATTGAAAATAAAATTACGAA
* **
17652220 AGTACCCAATGTAATCTATATGACTTCCAT-CTCCATTTCTCATGCAAAAATATTCTCACAATTT
256 ACTA-CCAATGTAATCTATATGAC-TCCATCCTCCATTTCTCACACAAAAATATTCTCACAATTT
*
17652284 CTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAAGTTTGCTTTTCTCAGTTT-TTTAAGAA
319 CTTCTCTATTTAAACCACTCTCCATTTTGTTGAAGTAAGTTTGCTTTTCTCAGTTTATTT-AGAA
* * *
17652348 TATTTTTTAATTTAATTAATTCTCACTATTTAAGGCGATAATGTTATTTGTATGCAATTGTTAAA
383 -ATGTCTT--TTT--TTAA-T-T---TAGTTAAGGCGATAATGTTATTTGTATGCAATTGTTAAA
* * * ** * *
17652413 TTTCTT-GTTATTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGATGGA-TCGTAAATTCTATGTT
438 TTT-TTAGATATTTTTTCTCAATGTGCAAATTGGTAGGAGAACATGGACT-GTAAATTCAATGTT
* ** * * *
17652476 GTGGCCCATTACAATGGACAAACTCACTATATCGAAG-ACACCACTTAGAGTGCTAGTAAATAAA
501 GTGGCCCATTACAATGGACAAACTCAATATATAAAAGAACACCAATTAGAATGATAGTAAATAAA
* *
17652540 AGTAGAGGGACCAAATTCGCACAAGTCAATAAGTACAAGGACTATTCTTAGAATTTAACCAAAAA
566 AGTAGAGGGACCAAATCCGCACAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCAAAAA
* * * * *
17652605 TGATATTTGTTTTACTCGATAATGACACATGACGTTCTTGATATAAAAATAATAA-TTATTTATT
631 TAATATTTGTTTCACTCGACAATGACACACGACGTTCTTGATATAAAAAAAATAATTTATTTATT
* * * * *
17652669 TTAAAACT-TCCATCTT-TCGTGGTGATTTCAAGATATAAAATAATTTTTTATTTTTAAAGTGTC
696 TTAAAACTGT-CATCTTAT-GTGGCGATTTCAAAATATAAAATAA-TTTTTAATTTGAAAGTGTA
* * * * * *
17652732 TCTTTACATGGCGGTTCTAAGATATACAGAAAAAGTTGTTTCTAAAATTGTCCTCTTATATCGCG
758 TCTATAAATGGCGGTTCTAAAATATACA-AAAAAGTTATTTCTAAAAATGTCC-CTTATATCGCA
* *
17652797 GTTTCAAATTAAT
821 GTTTCAAAATAAG
* * **
17652810 AAAAATATATATTTTTCTAAAATAACTT-GGTTAGGGACCGTCCAGACCCTTACCCAACTGTCAA
1 AAAAATATATATTTTTCTAAAATAA-TTGGGTTAGGG-GCGACCAGACCCTTACCCAGTTGTCAA
** * *
17652874 TTGAAATTTCTATTGCGC-AAAAAAATTCAA
64 TTGAAACATCCATTGCACAAAAAAAATTCAA
17652904 CTTTAATAAA
Statistics
Matches: 813, Mismatches: 102, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
835 3 0.00
836 145 0.18
837 29 0.04
838 5 0.01
839 49 0.06
840 103 0.13
841 9 0.01
843 3 0.00
844 2 0.00
845 48 0.06
846 42 0.05
847 22 0.03
848 175 0.22
849 56 0.07
850 120 0.15
851 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (833 bp):
AAAAATATATATTTTTCTAAAATAATTGGGTTAGGGGCGACCAGACCCTTACCCAGTTGTCAATT
GAAACATCCATTGCACAAAAAAAATTCAAAATTTAAAAGTTTTTATTCGACCTACTTCCTTCAAT
CCATCAAACCCAATCCCCAACAAAATCACATCACATGACACTTTAATAAATCATTTTTTTCTGAA
ATTAACATTTAGGGACGGTTTCAAACTCCAAGATTCTAAAATTGAAAATAAAATTACGAAACTAC
CAATGTAATCTATATGACTCCATCCTCCATTTCTCACACAAAAATATTCTCACAATTTCTTCTCT
ATTTAAACCACTCTCCATTTTGTTGAAGTAAGTTTGCTTTTCTCAGTTTATTTAGAAATGTCTTT
TTTTAATTTAGTTAAGGCGATAATGTTATTTGTATGCAATTGTTAAATTTTTAGATATTTTTTCT
CAATGTGCAAATTGGTAGGAGAACATGGACTGTAAATTCAATGTTGTGGCCCATTACAATGGACA
AACTCAATATATAAAAGAACACCAATTAGAATGATAGTAAATAAAAGTAGAGGGACCAAATCCGC
ACAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCAAAAATAATATTTGTTTCACTCGAC
AATGACACACGACGTTCTTGATATAAAAAAAATAATTTATTTATTTTAAAACTGTCATCTTATGT
GGCGATTTCAAAATATAAAATAATTTTTAATTTGAAAGTGTATCTATAAATGGCGGTTCTAAAAT
ATACAAAAAAGTTATTTCTAAAAATGTCCCTTATATCGCAGTTTCAAAATAAG
Found at i:17653668 original size:769 final size:770
Alignment explanation
Indices: 17652131--17653664 Score: 2140
Period size: 769 Copynumber: 2.0 Consensus size: 770
17652121 ATCATATGAC
* *
17652131 ACTTTAATAAATCATTTTTTTTCTGAAATTGACATGTTAGGTGACGGTTTCAAACTCTGAGATTC
1 ACTTTAATAAATCATTTTTTTTCTGAAATTGACATATTAGGTGACGGTTTCAAACTCCGAGATTC
* * ** *
17652196 TAAAATTGAAAATAAAATTATGAAAGTACCCAATGTAATCTATATGACTTCCATCTCCATTTCTC
66 TAAAATTGAAAATAAAAATACGAAAGTACCCAATGTAATCTATATGACCGCCACCTCCATTTCTC
* *
17652261 ATGCAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACTCTCCATTTTGTTGAAGTAAGTTT
131 A-GCAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTTT
* *
17652326 GCTTTTCTCAGTTTTTTAAGAATATTTTTTAATTTAATTAATTCTCACTATTTAAGGCGATAATG
195 GCTTTTCTCAGTTTTTTAAGAATATTTTTTAATTTAATTAATTCTCACTATCTAAGACGATAATG
* * *
17652391 TTATTTGTATGCAATTGTTAAATTTCTTGTTATTTTTTTTGAATGTGCAGGTTGGTAGGAGAAGA
260 TTATTTCTATGCAATTGTTAAATTTCTTGTCATTTTTTCTGAATGTGCAGGTTGGTAGGAGAAGA
*
17652456 TGGATCGTAAATTCTATGTTGTGGCCCATTACAATGGACAAACTCACTATATCGAAGACACCACT
325 TGGATCGTAAATTCTATGTTGTGGCCCATTACAATGGACAAACTCACTATATC-AAGACACCAAT
* * * *
17652521 TAGAGTGCTAGTAAATAAAAGTAGAGGGACCAAATTCGCACAAGTCAATAAGTACAAGGACTATT
389 TAGAATGCTAGTAAATAAAAGTAGAGGGACCAAATCCGCACAAATCAATAAGTACAAGGACCATT
* * * *
17652586 CTTAGAATTTAACCAAAAATGATATTTGTTTTACTCGATAATGACACATGACGTTCTTGATATAA
454 CATAGAATTTAACCAAAAATAATATTTATTTTACTCGATAATGACACATGACGTTCTTGACATAA
* *
17652651 AAATAATAATTATTTATTTTAAAACTTCCATCTTTCGTGGTGATTTCAAGATATAAAATAATTTT
519 AAATAATAATTATTTATTTTAAAACTTCCATCTTACGTGGCGATTTCAAGATATAAAATAATTTT
* * * * * *
17652716 TTATTTTTAAAGTGTCTCTTTACATGGCGGTTCTAAGATATACAGAAAAAGTTGTTTCTAAAATT
584 TTATGTTGAAAGTGCCTCTTTACATGGCGGTTCTAAGATATACAAAAAAAGTTATTTCTAAAAGT
* * *
17652781 GTCCTCTTATATCGCGGTTTCAAATTAATAAAAATATATATTTTTCTAAAATAACTTGGTTAGGG
649 GTCCTCTTATATCACGATTTCAAATTAATAAAAATATATATTTTTCTAAAATAACTGGGTTAGGG
* ** *
17652846 ACCGTCCAGACCCTTACCCAACTGTCAATTGAAATTTCTATTGCGCAAAAAAATTCA
714 ACCGTCCAGACCCTTACCCAACTATCAATTGAAACATCCATTGCGCAAAAAAATTCA
* *
17652903 ACTTTAATAAATTATTTTTTTT-TGAAATTGACATATTAGGTGGCGGTTTCAAACTCCGAGATTC
1 ACTTTAATAAATCATTTTTTTTCTGAAATTGACATATTAGGTGACGGTTTCAAACTCCGAGATTC
* *
17652967 TAGAATTGAAAATAAAAATACGAAAGTA-CC-TTGTAATCTATATGACCGCCACCTCCATTTCTT
66 TAAAATTGAAAATAAAAATACGAAAGTACCCAATGTAATCTATATGACCGCCACCTCCATTTC-T
17653030 CCA-CAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTT
130 -CAGCAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTT
* * * *
17653094 TGCTTTTGTTAGTTTTTTTAA-ATATATTTTTTAATTTAGTTAATTTTCACTATCTAAGACGATA
194 TGCTTTTCTCAG-TTTTTTAAGA-ATATTTTTTAATTTAATTAATTCTCACTATCTAAGACGATA
*
17653158 ATGTTATTTCTATGCAATTGTTATATTTCTTGTCATTTTTTCTG-ATGTGCAGGTTGGTAGGAGA
257 ATGTTATTTCTATGCAATTGTTAAATTTCTTGTCATTTTTTCTGAATGTGCAGGTTGGTAGGAGA
* *
17653222 AGATGGGTCGTAAATTC-ATTGTTGTGGCCGATTACAATGGACAAACTCACTATAT-AAGGACAC
322 AGATGGATCGTAAATTCTA-TGTTGTGGCCCATTACAATGGACAAACTCACTATATCAA-GACAC
* * *
17653285 CAATTTGAATGCTTGTAAATAAAAGTAGGAGGG-CCTAATCCGCACAAATCAATAAGTACAAGGA
385 CAATTAGAATGCTAGTAAATAAAAGTA-GAGGGACCAAATCCGCACAAATCAATAAGTACAAGGA
* * * *
17653349 CCATTCATAGAATTTAACCAAAAATAATATTTATTTTAGTCGACT-TTGACACGCTG-TGTTCTT
449 CCATTCATAGAATTTAACCAAAAATAATATTTATTTTACTCGA-TAATGACAC-ATGACGTTCTT
* * *
17653412 GACATAAAAATTAATAATTTTTTTATTTTAAAACTGT-TATCTTACGTGGCGGTTTCAAGATAT-
512 GACATAAAAA-TAATAA-TTATTTATTTTAAAACT-TCCATCTTACGTGGCGATTTCAAGATATA
* *
17653475 AAATAA-TTTTTATGTTGAAAGTGCCTCTTTACAT-GTGGTT-TCAAGATATAGAAAAAAAGTTA
574 AAATAATTTTTTATGTTGAAAGTGCCTCTTTACATGGCGGTTCT-AAGATATACAAAAAAAGTTA
* *
17653537 TTTCTAAAAGTGTCACT-TTATA-CTACGATTTCAAATTAAT-AAAAT-TATTTTATTTTTAAAA
638 TTTCTAAAAGTGTC-CTCTTATATC-ACGATTTCAAATTAATAAAAATATATATT-TTTCTAAAA
* * *
17653598 TAGCTGGGTTAAGGG-CCGGT-CAGATCCTTGCCCAACTATCAATTGAAACATCCATTGCGCAAA
700 TAACTGGGTT-AGGGACC-GTCCAGACCCTTACCCAACTATCAATTGAAACATCCATTGCGCAAA
17653661 AAAA
763 AAAA
17653665 AAATCTAGTT
Statistics
Matches: 678, Mismatches: 66, Indels: 42
0.86 0.08 0.05
Matches are distributed among these distances:
765 5 0.01
766 66 0.10
767 62 0.09
768 143 0.21
769 188 0.28
770 126 0.19
771 67 0.10
772 21 0.03
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (770 bp):
ACTTTAATAAATCATTTTTTTTCTGAAATTGACATATTAGGTGACGGTTTCAAACTCCGAGATTC
TAAAATTGAAAATAAAAATACGAAAGTACCCAATGTAATCTATATGACCGCCACCTCCATTTCTC
AGCAAAAATATTCTCACAATTTCTTCTCTATTTAAACTACCCTCCATTTTGTTGAAGAAAGTTTG
CTTTTCTCAGTTTTTTAAGAATATTTTTTAATTTAATTAATTCTCACTATCTAAGACGATAATGT
TATTTCTATGCAATTGTTAAATTTCTTGTCATTTTTTCTGAATGTGCAGGTTGGTAGGAGAAGAT
GGATCGTAAATTCTATGTTGTGGCCCATTACAATGGACAAACTCACTATATCAAGACACCAATTA
GAATGCTAGTAAATAAAAGTAGAGGGACCAAATCCGCACAAATCAATAAGTACAAGGACCATTCA
TAGAATTTAACCAAAAATAATATTTATTTTACTCGATAATGACACATGACGTTCTTGACATAAAA
ATAATAATTATTTATTTTAAAACTTCCATCTTACGTGGCGATTTCAAGATATAAAATAATTTTTT
ATGTTGAAAGTGCCTCTTTACATGGCGGTTCTAAGATATACAAAAAAAGTTATTTCTAAAAGTGT
CCTCTTATATCACGATTTCAAATTAATAAAAATATATATTTTTCTAAAATAACTGGGTTAGGGAC
CGTCCAGACCCTTACCCAACTATCAATTGAAACATCCATTGCGCAAAAAAATTCA
Found at i:17655065 original size:5 final size:5
Alignment explanation
Indices: 17655040--17655099 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
17655030 TATTTTATAA
* * *
17655040 CATAT CATGT CATAT ACCATAT CATAT CGTAT CACAT CTTATAT CATAT
1 CATAT CATAT CATAT --CATAT CATAT CATAT CATAT C--ATAT CATAT
17655089 CATAT CATAT C
1 CATAT CATAT C
17655100 CTACCTCCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 36 0.80
7 9 0.20
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:17659605 original size:12 final size:12
Alignment explanation
Indices: 17659576--17659605 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
17659566 ATGCAAACTT
17659576 TTTTTTCTTTCA
1 TTTTTTCTTTCA
*
17659588 ATTTTTCTTTCA
1 TTTTTTCTTTCA
17659600 TTTTTT
1 TTTTTT
17659606 TAAATAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTCTTTCA
Found at i:17660061 original size:26 final size:26
Alignment explanation
Indices: 17660032--17660081 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
17660022 AAGAAAAATT
*
17660032 AAAAT-GTAACAATTAAATTAAAAACA
1 AAAATAGTAA-AATAAAATTAAAAACA
*
17660058 AAAATATTAAAATAAAATTAAAAA
1 AAAATAGTAAAATAAAATTAAAAA
17660082 ATGGCTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.24
Consensus pattern (26 bp):
AAAATAGTAAAATAAAATTAAAAACA
Found at i:17662436 original size:24 final size:24
Alignment explanation
Indices: 17662409--17662457 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
17662399 AATGTATTGG
* * *
17662409 CCCTTTTGTCACGAAGTGGAATGA
1 CCCTTTCGACACGAAATGGAATGA
*
17662433 CCCTTTCGACGCGAAATGGAATGA
1 CCCTTTCGACACGAAATGGAATGA
17662457 C
1 C
17662458 ACCCCACCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (24 bp):
CCCTTTCGACACGAAATGGAATGA
Found at i:17663390 original size:6 final size:6
Alignment explanation
Indices: 17663379--17663433 Score: 110
Period size: 6 Copynumber: 9.2 Consensus size: 6
17663369 TAACATGCAA
17663379 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
17663427 AAAAAT A
1 AAAAAT A
17663434 GGTTGCCTCC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:17670432 original size:29 final size:29
Alignment explanation
Indices: 17670399--17670468 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
17670389 CACTGATCAT
* * *
17670399 TAGCCCATGTGTGACACACGGCCATGTAC
1 TAGCCCGTGTGTGACACAAGACCATGTAC
* *
17670428 TAGCCCGTGTGTGACATAAGACCATGTGC
1 TAGCCCGTGTGTGACACAAGACCATGTAC
17670457 TAGCCCGTGTGT
1 TAGCCCGTGTGT
17670469 CCAGCCTGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (29 bp):
TAGCCCGTGTGTGACACAAGACCATGTAC
Found at i:17674085 original size:38 final size:39
Alignment explanation
Indices: 17674026--17674108 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 39
17674016 TGAGATTTGT
* * * *
17674026 GAAAATAATCATAGCTTTGAAGACTGCTCACAGCATGCA
1 GAAAATAATCACAACTATGAAGACTGCCCACAGCATGCA
*
17674065 -AAAATAATCACAACTATGAAGACTTCCCACAGCATGCA
1 GAAAATAATCACAACTATGAAGACTGCCCACAGCATGCA
17674103 GAAAAT
1 GAAAAT
17674109 GCATATTATG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 33 0.87
39 5 0.13
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.20
Consensus pattern (39 bp):
GAAAATAATCACAACTATGAAGACTGCCCACAGCATGCA
Found at i:17683226 original size:29 final size:29
Alignment explanation
Indices: 17683193--17683275 Score: 121
Period size: 29 Copynumber: 2.9 Consensus size: 29
17683183 ACATTGATCA
*
17683193 CTAGCTCATGTGTGACACACGGCCATGTG
1 CTAGCCCATGTGTGACACACGGCCATGTG
*
17683222 CTAGCCCATGTGTGACACACGACCATGTG
1 CTAGCCCATGTGTGACACACGGCCATGTG
* * *
17683251 TTAGCCCGTGTGTGACACACAGCCA
1 CTAGCCCATGTGTGACACACGGCCA
17683276 CGCACATGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (29 bp):
CTAGCCCATGTGTGACACACGGCCATGTG
Found at i:17687303 original size:14 final size:14
Alignment explanation
Indices: 17687284--17687311 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
17687274 GTGCACTCAC
17687284 GCAGTTCTAGTATG
1 GCAGTTCTAGTATG
17687298 GCAGTTCTAGTATG
1 GCAGTTCTAGTATG
17687312 TTCTTCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (14 bp):
GCAGTTCTAGTATG
Found at i:17688937 original size:15 final size:15
Alignment explanation
Indices: 17688917--17688950 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17688907 CTCGGTAGGT
* *
17688917 TCTTCTTCTTCTTTC
1 TCTTCTTCCTCCTTC
17688932 TCTTCTTCCTCCTTC
1 TCTTCTTCCTCCTTC
17688947 TCTT
1 TCTT
17688951 TTATTTGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTTCTTCCTCCTTC
Found at i:17700098 original size:37 final size:38
Alignment explanation
Indices: 17700038--17700121 Score: 118
Period size: 37 Copynumber: 2.2 Consensus size: 38
17700028 GTATATGTTC
*
17700038 ATGCAGTGATATTCCTGGGTGCAATT-GAAGAATACTT
1 ATGCAGTGATATTCCTGGATGCAATTAGAAGAATACTT
* *
17700075 ATGTAGTGATAGTT-CTGGATGCAATTAGAAGAATATTT
1 ATGCAGTGATA-TTCCTGGATGCAATTAGAAGAATACTT
17700113 ATGCAGTGA
1 ATGCAGTGA
17700122 CAGTCTTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
37 21 0.51
38 20 0.49
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (38 bp):
ATGCAGTGATATTCCTGGATGCAATTAGAAGAATACTT
Found at i:17700204 original size:37 final size:38
Alignment explanation
Indices: 17700152--17700224 Score: 130
Period size: 37 Copynumber: 1.9 Consensus size: 38
17700142 AAATATTCCT
*
17700152 GCGGCGACAGTTTTTGGGTGCAATCTGGAAGTGCTCTG
1 GCGGCGACAGTTTTTGGGTGCAATCTAGAAGTGCTCTG
17700190 GCGGCGACAG-TTTTGGGTGCAATCTAGAAGTGCTC
1 GCGGCGACAGTTTTTGGGTGCAATCTAGAAGTGCTC
17700225 ATGTGGTAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 24 0.71
38 10 0.29
ACGTcount: A:0.18, C:0.19, G:0.36, T:0.27
Consensus pattern (38 bp):
GCGGCGACAGTTTTTGGGTGCAATCTAGAAGTGCTCTG
Found at i:17713828 original size:37 final size:36
Alignment explanation
Indices: 17713782--17713869 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 36
17713772 ATTTTCACCC
* * * *
17713782 AAAATTGTCGCCGCATGAG-AGCCTCTAGATTGCGCCT
1 AAAACTGTCGCCGCATGAGCA-CCTCCAGATTGC-ACG
* *
17713819 AAAACTGTCGCCACATGAGCACTTCCAGATTGCACG
1 AAAACTGTCGCCGCATGAGCACCTCCAGATTGCACG
17713855 AAAACTGTCGCCGCA
1 AAAACTGTCGCCGCA
17713870 AGAATATTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 15 0.35
37 27 0.63
38 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (36 bp):
AAAACTGTCGCCGCATGAGCACCTCCAGATTGCACG
Found at i:17715514 original size:13 final size:14
Alignment explanation
Indices: 17715485--17715515 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
17715475 TTCAATACAT
17715485 TGACATTTAACCTC
1 TGACATTTAACCTC
17715499 TGACATTTAA-CTC
1 TGACATTTAACCTC
17715512 TGAC
1 TGAC
17715516 TGCGTTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:17715952 original size:6 final size:6
Alignment explanation
Indices: 17715941--17715965 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
17715931 AAATGGTTGG
17715941 TAACAA TAACAA TAACAA TAACAA T
1 TAACAA TAACAA TAACAA TAACAA T
17715966 TTGCCAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (6 bp):
TAACAA
Found at i:17723813 original size:18 final size:18
Alignment explanation
Indices: 17723787--17723829 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
17723777 GATATTTTCA
* *
17723787 TGCATTTTTTTATTGTCCC
1 TGCATTTTATT-TTGTCAC
17723806 TGCATTTTATTTTGTCAC
1 TGCATTTTATTTTGTCAC
17723824 TGCATT
1 TGCATT
17723830 CCTTTTGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.14, C:0.19, G:0.12, T:0.56
Consensus pattern (18 bp):
TGCATTTTATTTTGTCAC
Found at i:17724998 original size:23 final size:23
Alignment explanation
Indices: 17724972--17725018 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
17724962 ATAAGATCAG
17724972 CTTGGAATTGCGACCAGCGACGT
1 CTTGGAATTGCGACCAGCGACGT
*
17724995 CTTGGAATTGTGACCAGCGACGT
1 CTTGGAATTGCGACCAGCGACGT
17725018 C
1 C
17725019 ATTGCACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (23 bp):
CTTGGAATTGCGACCAGCGACGT
Found at i:17726019 original size:13 final size:14
Alignment explanation
Indices: 17725990--17726020 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
17725980 TTCAGTACAT
17725990 TGACATTTAACCTC
1 TGACATTTAACCTC
17726004 TGACATTTAA-CTC
1 TGACATTTAACCTC
17726017 TGAC
1 TGAC
17726021 CGCATTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:17730160 original size:37 final size:37
Alignment explanation
Indices: 17730119--17730210 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 37
17730109 CCAAATTTGT
* *
17730119 GCCCAAAACCGTCGTCGCATGAGCACCTCTAGATTGC
1 GCCCAAAACTGTCGTCGCATGAGCACCTCCAGATTGC
** * *
17730156 GCCCAAAACTGTCACCACATGAGCACTTCCAGATTGC
1 GCCCAAAACTGTCGTCGCATGAGCACCTCCAGATTGC
*
17730193 -ACCAAAACTGTCGTCGCA
1 GCCCAAAACTGTCGTCGCA
17730211 GGAATATTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
36 14 0.31
37 31 0.69
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (37 bp):
GCCCAAAACTGTCGTCGCATGAGCACCTCCAGATTGC
Found at i:17753068 original size:21 final size:21
Alignment explanation
Indices: 17753026--17753069 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
17753016 CTTCATTTCA
*
17753026 TTTTCTTCCTCTTTTTCTTCC
1 TTTTCTTCCTCTTCTTCTTCC
*
17753047 TTTTCTTCTTCTTCCTTC-TCC
1 TTTTCTTCCTCTT-CTTCTTCC
17753068 TT
1 TT
17753070 CATCTGGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTCTTCCTCTTCTTCTTCC
Found at i:17760972 original size:14 final size:14
Alignment explanation
Indices: 17760953--17760980 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
17760943 ATGCAATCAG
17760953 AGTTAAATGTCAAA
1 AGTTAAATGTCAAA
17760967 AGTTAAATGTCAAA
1 AGTTAAATGTCAAA
17760981 GCAACTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
AGTTAAATGTCAAA
Found at i:17768720 original size:13 final size:13
Alignment explanation
Indices: 17768702--17768726 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17768692 CTCGTTGACC
17768702 CGTTGACTTTGAT
1 CGTTGACTTTGAT
17768715 CGTTGACTTTGA
1 CGTTGACTTTGA
17768727 CCAGACGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (13 bp):
CGTTGACTTTGAT
Found at i:17780490 original size:19 final size:20
Alignment explanation
Indices: 17780466--17780516 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
17780456 ATAATTTTCA
*
17780466 TGCATTTTTATTTTGTCA-T
1 TGCATTTTTATTATGTCAGT
* *
17780485 TGCATTTTTGTTATGTTAGT
1 TGCATTTTTATTATGTCAGT
*
17780505 TGCATTGTTATT
1 TGCATTTTTATT
17780517 GCATTTCCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.61
Consensus pattern (20 bp):
TGCATTTTTATTATGTCAGT
Found at i:17781093 original size:11 final size:10
Alignment explanation
Indices: 17781073--17781125 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
17781063 CAATCACTTG
17781073 AAAAAGA-AA
1 AAAAAGAGAA
*
17781082 AAAATGAG-A
1 AAAAAGAGAA
17781091 AAAAAG-GAA
1 AAAAAGAGAA
17781100 GAAAAAGA-AA
1 -AAAAAGAGAA
17781110 AAAAAGAAGAA
1 AAAAAG-AGAA
17781121 AAAAA
1 AAAAA
17781126 TTTTGATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
8 1 0.03
9 19 0.53
10 9 0.25
11 7 0.19
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAAGAGAA
Found at i:17781096 original size:18 final size:18
Alignment explanation
Indices: 17781073--17781123 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
17781063 CAATCACTTG
17781073 AAAAAGAA-AAAAATGAGAA
1 AAAAAGAAGAAAAA-GA-AA
*
17781092 AAAAGGAAGAAAAAGAAA
1 AAAAAGAAGAAAAAGAAA
17781110 AAAAAGAAGAAAAA
1 AAAAAGAAGAAAAA
17781124 AATTTTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 15 0.52
19 9 0.31
20 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (18 bp):
AAAAAGAAGAAAAAGAAA
Found at i:17784111 original size:57 final size:57
Alignment explanation
Indices: 17784048--17784261 Score: 286
Period size: 57 Copynumber: 3.8 Consensus size: 57
17784038 AATTTACAAT
* * * *
17784048 TTTTGCCATTGGTTTTCCATATTTTACAGTTTTGCCACTATTTTCCAGATTTTACAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACTATTTTCCAGATTTTACAG
* * * * * *
17784105 TTTTGCCATTGGTTTTCTAGATTTTATAGTTTTACCACTATTTTTCAGATTTTATAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACTATTTTCCAGATTTTACAG
* * *
17784162 TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACT-TTTTGCATATTTTACAA
1 TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACTATTTTCCAGATTTTACAG
* *
17784218 TTTTGCCACTAGTTTTCTAGATTTTATAGTTTTGGCACTATTTT
1 TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACTATTTT
17784262 TTTTAAAAAT
Statistics
Matches: 140, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
56 50 0.36
57 90 0.64
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (57 bp):
TTTTGCCACTAGTTTTCTAGATTTTACAGTTTTGCCACTATTTTCCAGATTTTACAG
Found at i:17784262 original size:29 final size:29
Alignment explanation
Indices: 17784048--17784262 Score: 242
Period size: 29 Copynumber: 7.6 Consensus size: 29
17784038 AATTTACAAT
* * * *
17784048 TTTTGCCATTGGTTTTCCATATTTTACAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
*
17784077 TTTTGCCACTA-TTTTCCAGATTTTACAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
* * *
17784105 TTTTGCCATTGGTTTTCTAGATTTTATAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
* * *
17784134 TTTTACCACTATTTTTC-AGATTTTATAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
17784162 TTTTGCCACTAGTTTTCTAGATTTTACAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
* *
17784191 TTTTGCCACT--TTTTGC-ATATTTTACAA
1 TTTTGCCACTAGTTTT-CTAGATTTTACAG
*
17784218 TTTTGCCACTAGTTTTCTAGATTTTATAG
1 TTTTGCCACTAGTTTTCTAGATTTTACAG
* *
17784247 TTTTGGCACTATTTTT
1 TTTTGCCACTAGTTTT
17784263 TTTAAAAATT
Statistics
Matches: 159, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.14
28 53 0.33
29 83 0.52
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (29 bp):
TTTTGCCACTAGTTTTCTAGATTTTACAG
Found at i:17784773 original size:45 final size:45
Alignment explanation
Indices: 17784678--17784776 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
17784668 TCCGATTATC
* * * * *
17784678 TATGCTATATGACATGAATGATAAGATGATTATTATTTGGTTGAG
1 TATGCTATATGACACGAATGATAAGATAATTAGTATTTGATTAAG
* * * *
17784723 CATGCTATATGATACGAATGATAAGCTAATTAGTATTTGATTAAT
1 TATGCTATATGACACGAATGATAAGATAATTAGTATTTGATTAAG
17784768 TATGCTATA
1 TATGCTATA
17784777 CGATCTACAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.39
Consensus pattern (45 bp):
TATGCTATATGACACGAATGATAAGATAATTAGTATTTGATTAAG
Found at i:17784835 original size:36 final size:36
Alignment explanation
Indices: 17784787--17784957 Score: 211
Period size: 36 Copynumber: 4.8 Consensus size: 36
17784777 CGATCTACAT
*
17784787 GATATGGTAAATGTTATTTGATTGATTATGTTATAC
1 GATATGGTAAATGTTATTTGATTGATTATGCTATAC
* * * *
17784823 AATATGGTAAATGTTATGTGATTGACTATGCTATAT
1 GATATGGTAAATGTTATTTGATTGATTATGCTATAC
* * * *
17784859 GATATGGTAAATATTAATTGATTGACTATACTATAC
1 GATATGGTAAATGTTATTTGATTGATTATGCTATAC
* *
17784895 GATATGGTAAATGTTATGTGATTTATTATGCTATAC
1 GATATGGTAAATGTTATTTGATTGATTATGCTATAC
17784931 TG-TATGGTAAATGTT-TTGTGATTGATT
1 -GATATGGTAAATGTTATT-TGATTGATT
17784958 GACTAGAAAA
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
35 1 0.01
36 112 0.98
37 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (36 bp):
GATATGGTAAATGTTATTTGATTGATTATGCTATAC
Found at i:17784953 original size:72 final size:72
Alignment explanation
Indices: 17784785--17784955 Score: 238
Period size: 72 Copynumber: 2.4 Consensus size: 72
17784775 TACGATCTAC
* **
17784785 ATGATATGGTAAATGTTATTTGATTGATTATGTTATACAATATGGTAAATGTTATGTGATTGACT
1 ATGATATGGTAAATGTTATTTGATTGACTATACTATACAATATGGTAAATGTTATGTGATTGACT
17784850 ATGCTAT
66 ATGCTAT
* * * * *
17784857 ATGATATGGTAAATATTAATTGATTGACTATACTATACGATATGGTAAATGTTATGTGATTTATT
1 ATGATATGGTAAATGTTATTTGATTGACTATACTATACAATATGGTAAATGTTATGTGATTGACT
17784922 ATGCTAT
66 ATGCTAT
17784929 ACTG-TATGGTAAATGTT-TTGTGATTGA
1 A-TGATATGGTAAATGTTATT-TGATTGA
17784956 TTGACTAGAA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 1 0.01
72 84 0.97
73 2 0.02
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (72 bp):
ATGATATGGTAAATGTTATTTGATTGACTATACTATACAATATGGTAAATGTTATGTGATTGACT
ATGCTAT
Found at i:17786838 original size:43 final size:43
Alignment explanation
Indices: 17786790--17787056 Score: 331
Period size: 43 Copynumber: 6.3 Consensus size: 43
17786780 TTATGTGGGA
* ** * * *
17786790 AAACGCCGCTATAGAACATTATCTTTAGCGATGTTTTTCCCAT
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
* *
17786833 AAACGCCACTATAGAACATGGTCTTTAGTGACGTTTTTCCCAC
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
* * *
17786876 AAATGCCGCTATAGAACATGGTCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
* * * *
17786918 AAATGCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
*
17786961 AAACGCCACTATAGAACAT-GTCTTTAGCGACGCTTTTCCCAA
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
* * * *
17787003 AAACGCCACTATAGAATATGGTCTTTAGTGGCGTTTTTCCCAC
1 AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
*
17787046 AAATGCCACTA
1 AAACGCCACTA
17787057 ACATTAACAG
Statistics
Matches: 199, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
42 79 0.40
43 120 0.60
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
AAACGCCACTATAGAACATGGTCTTTAGCGACGCTTTTCCCAC
Found at i:17787054 original size:85 final size:85
Alignment explanation
Indices: 17786798--17787056 Score: 358
Period size: 85 Copynumber: 3.0 Consensus size: 85
17786788 GAAAACGCCG
* * * *
17786798 CTATAGAACATTATCTTTAGCGATGTTTTTCCCATAAACGCCACTATAGAACATGGTCTTTAGTG
1 CTATAGAACA-TGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTATAGAACATGGTCTTTAGTG
* *
17786863 ACGTTTTTCCCACAAATGCCG
65 GCGTTTTTCCCACAAATGCCA
* * * * * *
17786884 CTATAGAACATGGTCTTTAGCGGCGC-TTTCCCACAAATGCCGCTATAGAACATGATCTTTAGCG
1 CTATAGAACAT-GTCTTTAGCGACGCTTTTCCCAAAAACGCCACTATAGAACATGGTCTTTAGTG
* *
17786948 GCGCTTTTCCCACAAACGCCA
65 GCGTTTTTCCCACAAATGCCA
*
17786969 CTATAGAACATGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTATAGAATATGGTCTTTAGTGG
1 CTATAGAACATGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTATAGAACATGGTCTTTAGTGG
17787034 CGTTTTTCCCACAAATGCCA
66 CGTTTTTCCCACAAATGCCA
17787054 CTA
1 CTA
17787057 ACATTAACAG
Statistics
Matches: 149, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
84 13 0.09
85 116 0.78
86 20 0.13
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (85 bp):
CTATAGAACATGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTATAGAACATGGTCTTTAGTGG
CGTTTTTCCCACAAATGCCA
Found at i:17787455 original size:66 final size:66
Alignment explanation
Indices: 17787332--17787456 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 66
17787322 TTGTAACTGT
* * * **
17787332 AGTTCATCATACTTTCTTTGAGACTTTGCTTCGCTCGCTGTTGCCTCGGCTTCAAGTTATAGATG
1 AGTTCATCATACTTTCTTTGAGACTTTGCCTCGCTCACTGCTGCCTCCACTTCAAGTTATAGATG
17787397 A
66 A
* * * * *
17787398 AGTTTATCATATTTTCTTTGAGCCTTTGCCTCTCTCACTGCTGCCTCCACTTTAAGTTA
1 AGTTCATCATACTTTCTTTGAGACTTTGCCTCGCTCACTGCTGCCTCCACTTCAAGTTA
17787457 AGCAATTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.42
Consensus pattern (66 bp):
AGTTCATCATACTTTCTTTGAGACTTTGCCTCGCTCACTGCTGCCTCCACTTCAAGTTATAGATG
A
Found at i:17795995 original size:42 final size:41
Alignment explanation
Indices: 17795921--17796060 Score: 151
Period size: 42 Copynumber: 3.4 Consensus size: 41
17795911 GTTTATGGGA
* * *
17795921 AAACACCGCTATTG--CTTAACCTTTAGCGCGTTTTTCTAT
1 AAACGCCGCTATTGCTCTTTACCTTTTGCGCGTTTTTCTAT
* *
17795960 AAATGCCGCTAATGCTCTTTACCTTTTGCAGCG-TTTTCTCAT
1 AAACGCCGCTATTGCTCTTTACCTTTTGC-GCGTTTTTCT-AT
* * *
17796002 AAACGTCGCTATTGCTCTTTAACTTTTGCGGCGTTTTTTCCAT
1 AAACGCCGCTATTGCTCTTTACCTTTTGC-GCG-TTTTTCTAT
17796045 AAACGCCGCTATTGCT
1 AAACGCCGCTATTGCT
17796061 TACTTTTTGC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
39 11 0.13
41 17 0.20
42 33 0.40
43 17 0.20
44 5 0.06
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (41 bp):
AAACGCCGCTATTGCTCTTTACCTTTTGCGCGTTTTTCTAT
Found at i:17797453 original size:40 final size:42
Alignment explanation
Indices: 17797361--17797481 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 42
17797351 TTTATGGGAA
* * *
17797361 AAACGCCGCTAATGTTCTTTACCTTTTGCGGTGTTTTTTCTAT
1 AAACGCCGCTATTGCTCTTTACCTTTTGCGGTG-TTTTTCCAT
* *
17797404 AAACACCGCTATTG-T-TTTACCTTTTGCGGCGTTTTTCCAT
1 AAACGCCGCTATTGCTCTTTACCTTTTGCGGTGTTTTTCCAT
*
17797444 AAACGCCGCTATTGCTCTTTACCTTTTACGGTGTTTTT
1 AAACGCCGCTATTGCTCTTTACCTTTTGCGGTGTTTTT
17797482 GTTCCAAACG
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
40 21 0.30
41 16 0.23
42 20 0.29
43 12 0.17
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.45
Consensus pattern (42 bp):
AAACGCCGCTATTGCTCTTTACCTTTTGCGGTGTTTTTCCAT
Found at i:17797559 original size:23 final size:23
Alignment explanation
Indices: 17797530--17798414 Score: 1090
Period size: 23 Copynumber: 38.3 Consensus size: 23
17797520 ATCTTAATTC
*
17797530 TTTAAGCACAAATTACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797553 TCTAAGCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17797576 TTTGAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
17797599 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* * * *
17797622 TTTGAGCTCAAATCATATTCATA
1 TTTAAGCACAAATCACATTAATA
*
17797645 TTTAAGCAAAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* * *
17797668 TTTAATCATAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797691 TTTAAGTAAAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
17797714 TTTAAGCACAAATCACATTATTAATA
1 TTTAAGCACAAATCAC---ATTAATA
*
17797740 TTTAAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
17797763 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
** *
17797786 TTTATTCACAAATCACATCAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797809 GTTAAGCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797832 TTTGAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797855 TTTAAGCACAAATCATATATTGATA
1 TTTAAGCACAAATC--ACATTAATA
* * *
17797880 TGTAAGTATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17797903 TTCAAGCACAAATCAGATTAATA
1 TTTAAGCACAAATCACATTAATA
**
17797926 TTTAAGCTTAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* * * *
17797949 TTTGAGCTCAAATCATATTGATA
1 TTTAAGCACAAATCACATTAATA
* *
17797972 TTTAAACAAAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* ** * * *
17797995 TTGAATTATAAATTATATTAATA
1 TTTAAGCACAAATCACATTAATA
* * *
17798018 ATTAAGTACAATTCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17798041 TTTAAGCAAAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17798064 TTTAAGCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17798087 TTTGAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
17798110 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
**
17798133 TTTAAGCACAAATCTTATTAATA
1 TTTAAGCACAAATCACATTAATA
17798156 TTT-AGCCACAAATCACATTAATA
1 TTTAAG-CACAAATCACATTAATA
*
17798179 TTTAAGCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17798202 TTTAAGCACAATTCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17798225 TTTAAGCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* * *
17798248 TTTGAGCACAAATCATATTTATA
1 TTTAAGCACAAATCACATTAATA
*
17798271 TTTAAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
* * *
17798294 TTTAATCATAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
*
17798317 TTTAAGCACAAATTACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17798340 TTTAAGCATAGATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
17798363 TTTGAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
17798386 TTTAAGCATC-AATCACATTAATA
1 TTTAAGCA-CAAATCACATTAATA
17798409 TTTAAG
1 TTTAAG
17798415 TATAGATATA
Statistics
Matches: 736, Mismatches: 118, Indels: 16
0.85 0.14 0.02
Matches are distributed among these distances:
22 2 0.00
23 690 0.94
24 3 0.00
25 19 0.03
26 22 0.03
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (23 bp):
TTTAAGCACAAATCACATTAATA
Found at i:17800807 original size:41 final size:42
Alignment explanation
Indices: 17800752--17800833 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
17800742 ACCACAGCAT
* **
17800752 AACAAGAACAAGCTCTATTCACCAGAATAAAAGAAAGCCAAC
1 AACAAGAAAAAGCTCTAAACACCAGAATAAAAGAAAGCCAAC
**
17800794 AACAA-AAAAAGCTCTAAACACCATTATAAAAGAAAGCCAA
1 AACAAGAAAAAGCTCTAAACACCAGAATAAAAGAAAGCCAA
17800834 ACCCGACTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 30 0.86
42 5 0.14
ACGTcount: A:0.56, C:0.22, G:0.10, T:0.12
Consensus pattern (42 bp):
AACAAGAAAAAGCTCTAAACACCAGAATAAAAGAAAGCCAAC
Found at i:17806647 original size:20 final size:19
Alignment explanation
Indices: 17806620--17806665 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
17806610 TGTCGGACCC
17806620 AACAAAAATAAAACAAATAA
1 AACAAAAATAAAA-AAATAA
* *
17806640 ACCAAAAAATTAAAAAATAA
1 AAC-AAAAATAAAAAAATAA
17806660 AACAAA
1 AACAAA
17806666 CAAAAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 3 0.14
20 10 0.45
21 9 0.41
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (19 bp):
AACAAAAATAAAAAAATAA
Found at i:17808500 original size:30 final size:30
Alignment explanation
Indices: 17808437--17808741 Score: 218
Period size: 30 Copynumber: 10.3 Consensus size: 30
17808427 CATTAAAATC
* * * * *
17808437 GGGTTAAATTTGAATTTTTGGGAACTTCAG
1 GGGTCAAATTAGAATTTTTGGAAAGTTTAG
* * *
17808467 GGGTCAAATCAGAATATTTGGAAAGTTTGG
1 GGGTCAAATTAGAATTTTTGGAAAGTTTAG
* * * *
17808497 GGGTTAAATTGGAATGTTTGGAAAATTTAG
1 GGGTCAAATTAGAATTTTTGGAAAGTTTAG
*
17808527 GGGTCAAATTCA-AATTTTTGGAAACTTTAG
1 GGGTCAAATT-AGAATTTTTGGAAAGTTTAG
* * *
17808557 GGGTAAAATTTGAATTTTTGGATAGTTT-G
1 GGGTCAAATTAGAATTTTTGGAAAGTTTAG
*
17808586 AGGGTCAAAATTA-AATTTTTAGAAAGTTTAG
1 -GGGTC-AAATTAGAATTTTTGGAAAGTTTAG
*
17808617 GGGTCAAAGTT-GAATTTTTGGAAATTTTAG
1 GGGTCAAA-TTAGAATTTTTGGAAAGTTTAG
* * *
17808647 GGGTCAAATTTGAGTTTTTCG--A-TTT-G
1 GGGTCAAATTAGAATTTTTGGAAAGTTTAG
* * *
17808673 AGGGTCAAATTTGAATTTTTGAAAAATTT-G
1 -GGGTCAAATTAGAATTTTTGGAAAGTTTAG
* * *
17808703 GAGGTCAAA--ACGTAATTCTTGGATAGTTTAA
1 G-GGTCAAATTA-G-AATTTTTGGAAAGTTTAG
17808734 GGGTCAAA
1 GGGTCAAA
17808742 AAATAATTTT
Statistics
Matches: 220, Mismatches: 39, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.00
27 21 0.10
28 1 0.00
29 9 0.04
30 181 0.82
31 7 0.03
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGTCAAATTAGAATTTTTGGAAAGTTTAG
Found at i:17808656 original size:90 final size:87
Alignment explanation
Indices: 17808437--17808711 Score: 279
Period size: 90 Copynumber: 3.1 Consensus size: 87
17808427 CATTAAAATC
* * * ** * *
17808437 GGGTTAAATTTGAATTTTTGGGAACTTCAGGGGTCAAATCAGAATATTTGGAAAGTTTGGGGGT-
1 GGGTCAAA-TTGAATTTTTGGAAACTTTAGGGGTCAAATTTGAATTTTTGG-AAGTTTGAGGGTC
* *
17808501 TAAATTGGAATGTTTGGAAAATTTAG
64 AAAATT-GAAT-TTTTGAAAATTTAG
* *
17808527 GGGTCAAATTCAAATTTTTGGAAACTTTAGGGGTAAAATTTGAATTTTTGGATAGTTTGAGGGTC
1 GGGTCAAATT-GAATTTTTGGAAACTTTAGGGGTCAAATTTGAATTTTTGGA-AGTTTGAGGGTC
* *
17808592 AAAATTAAATTTTTAGAAAGTTTAG
64 AAAATTGAATTTTT-GAAAATTTAG
* * *
17808617 GGGTCAAAGTTGAATTTTTGGAAATTTTAGGGGTCAAATTTGAGTTTTTCG-A-TTTGAGGGTCA
1 GGGTCAAA-TTGAATTTTTGGAAACTTTAGGGGTCAAATTTGAATTTTTGGAAGTTTGAGGGTCA
*
17808680 AATTTGAATTTTTGAAAAATTT-G
65 AAATTGAATTTTTG-AAAATTTAG
17808703 GAGGTCAAA
1 G-GGTCAAA
17808712 ACGTAATTCT
Statistics
Matches: 157, Mismatches: 21, Indels: 17
0.81 0.11 0.09
Matches are distributed among these distances:
86 3 0.02
87 35 0.22
88 1 0.01
89 6 0.04
90 105 0.67
91 7 0.04
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (87 bp):
GGGTCAAATTGAATTTTTGGAAACTTTAGGGGTCAAATTTGAATTTTTGGAAGTTTGAGGGTCAA
AATTGAATTTTTGAAAATTTAG
Found at i:17808665 original size:60 final size:60
Alignment explanation
Indices: 17808437--17808711 Score: 258
Period size: 60 Copynumber: 4.6 Consensus size: 60
17808427 CATTAAAATC
* * * * * * *
17808437 GGGTTAAATTTGAATTTTTGGGAACTTCAGGGGTCAAA-TCAGAATATTTGGAAAGTTTGG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTCAAATTTA-AATTTTTGGAAAGTTTAG
* * * * *
17808497 GGGTTAAATTGGAATGTTTGGAAAATTTAGGGGTCAAATTCAAATTTTTGGAAACTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTCAAATTTAAATTTTTGGAAAGTTTAG
* * * * *
17808557 GGGTAAAATTTGAATTTTTGGATAGTTT-GAGGGTCAAAATTAAATTTTTAGAAAGTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG-GGGTCAAATTTAAATTTTTGGAAAGTTTAG
* * * * *
17808617 GGGTCAAAGTTGAATTTTTGGAAATTTTAGGGGTCAAATTTGAGTTTTTCG--A-TTT-G
1 GGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTCAAATTTAAATTTTTGGAAAGTTTAG
*
17808673 AGGGTCAAATTTGAATTTTTGAAAAATTT-GGAGGTCAAA
1 -GGGTCAAATTTGAATTTTTGGAAAATTTAGG-GGTCAAA
17808712 ACGTAATTCT
Statistics
Matches: 182, Mismatches: 28, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
56 3 0.02
57 35 0.19
58 1 0.01
59 1 0.01
60 138 0.76
61 4 0.02
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (60 bp):
GGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTCAAATTTAAATTTTTGGAAAGTTTAG
Found at i:17808738 original size:87 final size:87
Alignment explanation
Indices: 17808517--17808741 Score: 217
Period size: 87 Copynumber: 2.6 Consensus size: 87
17808507 GGAATGTTTG
* * * * * * *
17808517 GAAAATTTAGGGGTCAAA-TTCAAATTTTTGGAAACTTTAGGGGTAAAATTTGAATTTTTGGATA
1 GAAAATTTAGGGGTCAAAGTT-GAATTCTTGGAAAGTTTAAGGGTCAAATTTGAGTTTTTCG--A
17808581 GTTTGAGGGTCAAAATTAAATTTTTA
63 -TTTGAGGGTCAAAATTAAATTTTTA
* * * *
17808607 GAAAGTTTAGGGGTCAAAGTTGAATTTTTGGAAATTTTAGGGGTCAAATTTGAGTTTTTCGATTT
1 GAAAATTTAGGGGTCAAAGTTGAATTCTTGGAAAGTTTAAGGGTCAAATTTGAGTTTTTCGATTT
* *
17808672 GAGGGTCAAATTTGAATTTTT-
66 GAGGGTCAAAATTAAATTTTTA
*
17808693 GAAAAATTT-GGAGGTCAAAACG-T-AATTCTTGGATAGTTTAAGGGTCAAA
1 G-AAAATTTAGG-GGTC-AAA-GTTGAATTCTTGGAAAGTTTAAGGGTCAAA
17808742 AAATAATTTT
Statistics
Matches: 117, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
86 3 0.03
87 54 0.46
88 5 0.04
89 1 0.01
90 52 0.44
91 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (87 bp):
GAAAATTTAGGGGTCAAAGTTGAATTCTTGGAAAGTTTAAGGGTCAAATTTGAGTTTTTCGATTT
GAGGGTCAAAATTAAATTTTTA
Found at i:17809829 original size:24 final size:22
Alignment explanation
Indices: 17809796--17809848 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
17809786 TTTAGGCTAC
17809796 TTGGGCTTAGTTTAGGTTGGGCTT
1 TTGGG-TTAGTTTAGGTTGGG-TT
*
17809820 TTAGGGTTAGTTTAGTTTGGGTT
1 TT-GGGTTAGTTTAGGTTGGGTT
17809843 TTGGGT
1 TTGGGT
17809849 AAATGGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 4 0.15
23 4 0.15
24 16 0.59
25 3 0.11
ACGTcount: A:0.09, C:0.04, G:0.38, T:0.49
Consensus pattern (22 bp):
TTGGGTTAGTTTAGGTTGGGTT
Found at i:17809923 original size:12 final size:12
Alignment explanation
Indices: 17809908--17809950 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
17809898 TTATTTATCT
17809908 ATAAAATAATAA
1 ATAAAATAATAA
17809920 AT-AAATAAATAA
1 ATAAAAT-AATAA
*
17809932 ATAAAATAAAAA
1 ATAAAATAATAA
*
17809944 ACAAAAT
1 ATAAAAT
17809951 TGGATTGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 4 0.15
12 19 0.70
13 4 0.15
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATAATAA
Done.