Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 60 of 120
Found at i:17810590 original size:50 final size:50
Alignment explanation
Indices: 17810536--17810677 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 50
17810526 TAGGAGTATA
* * *
17810536 AGATTTGTCC-TTGCGACTTCATTCTGTCCCTCTACAGCTTTAAGTGAATG
1 AGATTTG-CCATTGCGGCTTCAATCTATCCCTCTACAGCTTTAAGTGAATG
* * * *
17810586 AGATTTACCATTGCGGCTTCAATATACCCCTCTACAGCTTTAAGTGTATG
1 AGATTTGCCATTGCGGCTTCAATCTATCCCTCTACAGCTTTAAGTGAATG
* * *
17810636 AGATTTGCCACTGCGGCTTCAATCCATTCCTCTACAGCTTTA
1 AGATTTGCCATTGCGGCTTCAATCTATCCCTCTACAGCTTTA
17810678 GGGGTATAAG
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 2 0.03
50 76 0.97
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (50 bp):
AGATTTGCCATTGCGGCTTCAATCTATCCCTCTACAGCTTTAAGTGAATG
Found at i:17817436 original size:17 final size:17
Alignment explanation
Indices: 17817414--17817447 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17817404 ATCTTTTGAA
17817414 GGAGACATGCTAACTTT
1 GGAGACATGCTAACTTT
17817431 GGAGACATGCTAACTTT
1 GGAGACATGCTAACTTT
17817448 TGGCCTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (17 bp):
GGAGACATGCTAACTTT
Found at i:17820534 original size:15 final size:16
Alignment explanation
Indices: 17820489--17820535 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
17820479 GCATACATAG
*
17820489 TAAAATACAATATATACA
1 TAAAATAC-ATATACA-A
17820507 TAAAATACA-ATACAA
1 TAAAATACATATACAA
17820522 TAAAATA-ATATACA
1 TAAAATACATATACA
17820536 TATAGGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 1 0.04
15 13 0.48
16 4 0.15
17 1 0.04
18 8 0.30
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAATACATATACAA
Found at i:17820611 original size:30 final size:30
Alignment explanation
Indices: 17820575--17820731 Score: 174
Period size: 30 Copynumber: 5.3 Consensus size: 30
17820565 CATTAAAATC
* * *
17820575 GGGTTAAATTTGAATTTTTGGGAACTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG
* ** ** * *
17820605 GGGTTAAATCAGAATACTTGTAAAGTTT-G
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG
* *
17820634 GGGTCAAATTGGAATTTTTGGAAATTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG
*
17820664 GGGTCAAATTTGAGTTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG
17820694 GGGTCAAATTTGAATTTTTGGAAAATTT-G
1 GGGTCAAATTTGAATTTTTGGAAAATTTAG
17820723 GGTGTCAAA
1 GG-GTCAAA
17820732 ACATAATTCT
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
29 25 0.23
30 82 0.77
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTGGAAAATTTAG
Found at i:17820653 original size:59 final size:60
Alignment explanation
Indices: 17820575--17820731 Score: 174
Period size: 59 Copynumber: 2.6 Consensus size: 60
17820565 CATTAAAATC
* * * * *
17820575 GGGTTAAATTTGAATTTTTGGGAACTTTAGGGGTTAAATCAGAATACTTGTAAAGTTT-G
1 GGGTCAAATTTGAATTTTTGGAAACTTTAGGGGTCAAATCAGAATACTTGGAAAATTTAG
* * ** * **
17820634 GGGTCAAATTGGAATTTTTGGAAATTTTAGGGGTCAAATTTGAGTTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTTTGGAAACTTTAGGGGTCAAATCAGAATACTTGGAAAATTTAG
*
17820694 GGGTCAAATTTGAATTTTTGGAAAATTT-GGGTGTCAAA
1 GGGTCAAATTTGAATTTTTGGAAACTTTAGGG-GTCAAA
17820732 ACATAATTCT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
59 49 0.60
60 33 0.40
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (60 bp):
GGGTCAAATTTGAATTTTTGGAAACTTTAGGGGTCAAATCAGAATACTTGGAAAATTTAG
Found at i:17821920 original size:4 final size:4
Alignment explanation
Indices: 17821907--17821938 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
17821897 GTTTTTTAAT
17821907 TTTA -TTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
17821939 CTATAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:17822510 original size:26 final size:26
Alignment explanation
Indices: 17822468--17822533 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
17822458 TCATTATTAT
*
17822468 TTTATTTATTTTAATATTCAATATTTA
1 TTTA-TTATTTTTATATTCAATATTTA
* *
17822495 TTTATTATTTTTATATTGATTATTTA
1 TTTATTATTTTTATATTCAATATTTA
17822521 TTTATTATATTTT
1 TTTATTAT-TTTT
17822534 GCTACTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 27 0.77
27 8 0.23
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (26 bp):
TTTATTATTTTTATATTCAATATTTA
Found at i:17822526 original size:15 final size:15
Alignment explanation
Indices: 17822489--17822526 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
17822479 TAATATTCAA
*
17822489 TATTTATTTATTATT
1 TATTTATTGATTATT
17822504 T-TTATATTGATTATT
1 TATT-TATTGATTATT
17822519 TATTTATT
1 TATTTATT
17822527 ATATTTTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TATTTATTGATTATT
Found at i:17827051 original size:8 final size:7
Alignment explanation
Indices: 17827034--17827106 Score: 65
Period size: 8 Copynumber: 9.6 Consensus size: 7
17827024 TTTCACCCAA
17827034 AAAAAGAG
1 AAAAA-AG
17827042 AAAAATAG
1 AAAAA-AG
17827050 AAAAAAAG
1 -AAAAAAG
17827058 TAAAAAAG
1 -AAAAAAG
17827066 TAAAAAAG
1 -AAAAAAG
*
17827074 TAAAAAG
1 AAAAAAG
17827081 AAAAAAAG
1 -AAAAAAG
*
17827089 AAAAAGG
1 AAAAAAG
*
17827096 AAAAAGG
1 AAAAAAG
17827103 AAAA
1 AAAA
17827107 GAAAAGGGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
7 23 0.40
8 30 0.52
9 5 0.09
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (7 bp):
AAAAAAG
Found at i:17827070 original size:15 final size:15
Alignment explanation
Indices: 17827033--17827100 Score: 75
Period size: 15 Copynumber: 4.3 Consensus size: 15
17827023 ATTTCACCCA
*
17827033 AAAAAAGAGAAAAATAG
1 AAAAAA-AGTAAAA-AG
17827050 AAAAAAAGTAAAAAAG
1 AAAAAAAGT-AAAAAG
*
17827066 TAAAAAAGTAAAAAG
1 AAAAAAAGTAAAAAG
17827081 AAAAAAAG-AAAAAGG
1 AAAAAAAGTAAAAA-G
17827096 AAAAA
1 AAAAA
17827101 GGAAAAGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
14 5 0.11
15 19 0.41
16 12 0.26
17 10 0.22
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (15 bp):
AAAAAAAGTAAAAAG
Found at i:17827099 original size:12 final size:12
Alignment explanation
Indices: 17827083--17827133 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
17827073 GTAAAAAGAA
*
17827083 AAAAAGAAAAAGG
1 AAAAAGGAAAA-G
17827096 AAAAAGGAAAAG
1 AAAAAGGAAAAG
*
17827108 AAAAGGGAAAAG
1 AAAAAGGAAAAG
*
17827120 -AGAAGGAAAA-
1 AAAAAGGAAAAG
17827130 AAAA
1 AAAA
17827134 GAGAGGTCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 10 0.31
12 12 0.38
13 10 0.31
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAAG
Found at i:17827119 original size:7 final size:7
Alignment explanation
Indices: 17827068--17827118 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
17827058 TAAAAAAGTA
*
17827068 AAAAAGT
1 AAAAAGG
*
17827075 AAAAAGA
1 AAAAAGG
*
17827082 AAAAAAG
1 AAAAAGG
17827089 AAAAAGG
1 AAAAAGG
17827096 AAAAAGG
1 AAAAAGG
17827103 -AAAA-G
1 AAAAAGG
*
17827108 AAAAGGG
1 AAAAAGG
17827115 AAAA
1 AAAA
17827119 GAGAAGGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
5 1 0.03
6 7 0.19
7 29 0.78
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (7 bp):
AAAAAGG
Found at i:17827531 original size:49 final size:49
Alignment explanation
Indices: 17827478--17827575 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
17827468 GTTTTGCCTC
*
17827478 CAATAAAATTCAATTTTATCCGCCTTGCGACCCTGTTCAAGCATTTTTA
1 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTA
17827527 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTA
1 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTA
17827576 ATCTTTTCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (49 bp):
CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTA
Found at i:17827613 original size:77 final size:77
Alignment explanation
Indices: 17827527--17827728 Score: 341
Period size: 77 Copynumber: 2.6 Consensus size: 77
17827517 AGCATTTTTA
17827527 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTAATCTTTTCATTCATGC
1 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTAATCTTTTCATTCATGC
17827592 GAGCTTTGCCTC
66 GAGCTTTGCCTC
* *
17827604 CAATAAAATTCAATTTTATCCGCCTTGCGACCCTGCTCAAGCATTTTTAATCTTTTCATTCATGC
1 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTAATCTTTTCATTCATGC
*
17827669 GAGTTTTGCCTC
66 GAGCTTTGCCTC
* * * *
17827681 CAATAAAATTCAATTTTATCCACTTTACAACTCTGTTCAAGCATTTTT
1 CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTT
17827729 GCATTGAAAT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
77 116 1.00
ACGTcount: A:0.26, C:0.25, G:0.09, T:0.40
Consensus pattern (77 bp):
CAATAAAATTCAATTTTATCCGCCTTACGACCCTGTTCAAGCATTTTTAATCTTTTCATTCATGC
GAGCTTTGCCTC
Found at i:17828319 original size:49 final size:49
Alignment explanation
Indices: 17828181--17828384 Score: 174
Period size: 49 Copynumber: 4.1 Consensus size: 49
17828171 GGAAACGTTA
* * * * * *
17828181 AATCATATACCCTAAAAGACATGAAGGGAAAGATTGAGGCTGCAATGGTG
1 AATCTTATACCCT-AGAGACATGAAGGGAAAGATTGAAGCCGCAACGGCG
* ** * ** *
17828231 AATCTTGTACCAAAAAGATGTGAAGGGAAAGATTAAAGCCGCAACGGCG
1 AATCTTATACCCTAGAGACATGAAGGGAAAGATTGAAGCCGCAACGGCG
* * * * *
17828280 AATCTTGTACCCTAGAGACATGGAGGGGAAGGTTGAAGCCGCAACAGCG
1 AATCTTATACCCTAGAGACATGAAGGGAAAGATTGAAGCCGCAACGGCG
* * ** * * *
17828329 AACCTTATTCCCTAGAGATGTGAAGGGAAAGATTGAGGCCGTAAAGGCG
1 AATCTTATACCCTAGAGACATGAAGGGAAAGATTGAAGCCGCAACGGCG
17828378 AATCTTA
1 AATCTTA
17828385 AGACTGTAGA
Statistics
Matches: 120, Mismatches: 34, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
49 111 0.93
50 9 0.08
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (49 bp):
AATCTTATACCCTAGAGACATGAAGGGAAAGATTGAAGCCGCAACGGCG
Found at i:17828439 original size:24 final size:24
Alignment explanation
Indices: 17828398--17828444 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
17828388 CTGTAGAAAG
* *
17828398 TAGATTGAAGCAGTAAAGGTGAAC
1 TAGATTGAAGCAGAAAAGATGAAC
*
17828422 TAGATTGAAGCTGAAAAGATGAA
1 TAGATTGAAGCAGAAAAGATGAA
17828445 TCTTACGTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.06, G:0.28, T:0.21
Consensus pattern (24 bp):
TAGATTGAAGCAGAAAAGATGAAC
Found at i:17828740 original size:93 final size:93
Alignment explanation
Indices: 17828507--17830152 Score: 1494
Period size: 93 Copynumber: 17.6 Consensus size: 93
17828497 GCAGTGAAGT
* * *
17828507 AGATTAAAACAACGAAGCAGATCTCAAAGTCCCTGAGGTTA-AGTGGAATGGAGTGAAGCTTCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAG---C-A
** *
17828571 CAGCAAATCCTATACCCCTGAAGCCGTAATGGGTC
62 C--CAAATCCTATACCCCTG-AGTTGTAGTGGGTC
* ** * * * * *
17828606 GGATTAAAACAACAAAGCAGATCTCAATGTCGCTGAGGTTACACTGGAGTAGAGTGAAGTACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* * *
17828671 ATCCTATA-CCCTAAAGCTGTAGTGGTTC
66 ATCCTATACCCCT-GAGTTGTAGTGGGTC
* * * ** *
17828699 AGATTAAAATAATGAAGCAGATCTCAACGTCCCTGACGTTACAATAAAGTGGAATGAAGCACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
** ** *
17828764 ATCCTATACCTTTGAGTTACACTGGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * * * *
17828792 GGATAAAAATAGTGAAGCAGATCTCAGCGTCCTTGAGATTACAGTGGAGTGGAGTGAAGTACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
*
17828857 ATCCTATACCCCTAAGTTGTAGTGGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* * * *
17828885 AGATTAAAACAATGAAGCAGATCTCAACATCCCTGAGGTTATAGTGGAGTAGAGTGAAGCACCAG
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* * * *
17828950 ATCCTATATCCTTGAATT-TACAGTGGATC
66 ATCCTATACCCCTGAGTTGT--AGTGGGTC
* * * * * * **
17828979 -GAAT-CAA-AATG-AGTAACGAATCTCAATGTCCATGAGATTGTAGTGGAGTGGAGTGAAGCAC
1 AGATTAAAACAATGAAG-CA-G-ATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCAC
* *
17829040 CAAATCTTATACTCCTGAGTTGTAGTGGGTC
63 CAAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * ** *
17829071 GGATTAAAATAATGAAACAGATCTCAACATCTTTTAGGTTACAGTGGAGTGGAGTGAAGCACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* *
17829136 ATCCTATACCCCTGAGTTGCAGTAGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * *
17829164 GGATTAAAATAATGAGGCAAATCTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
**
17829229 ATCCTATACCCCTGAGTTACAGTGGGTTC
66 ATCCTATACCCCTGAGTTGTAGTGGG-TC
* * ** *
17829258 -GATTAAAACAATGAAGTAGATCTCAATGTCCCTGAGGTTACAGTACAGTGGGGTGAAGCACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
17829322 ATCCTATACCCCTGAGTTGTAGTGGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * * * * * *
17829350 GGATTAAAACAATGATGCAGATCTCAACATCCTTGAGGCTATAATGGAGTAGAGTGAAGCATCAG
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* * * *
17829415 ATCCTATATCCCTAAATT-TACAGTGGATC
66 ATCCTATACCCCTGAGTTGT--AGTGGGTC
* * * * * *
17829444 -GAAT-CAA-AATGAGTAACAAATCTCAATGTCCTTGAGGTTACCA-TGGAGTGGAGTGAAGCAC
1 AGATTAAAACAATGA--AGCAGATCTCAACGTCCCTGAGGTTA-CAGTGGAGTGGAGTGAAGCAC
*
17829505 CAAATCTTATACCCCTGAGTTGTAGTGGGTC
63 CAAATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * *
17829536 -GAATTAAAACAATGAACCAGATCTTAACGTCTCTGAGGTTACAGTGGAGTGAAGTGAAGCATCA
1 AG-ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
*
17829600 AATCCTATACCCTTGAGTT-TCAGTGGGTC
65 AATCCTATACCCCTGAGTTGT-AGTGGGTC
* * * * ** * *
17829629 AAATTAAAATAATGAGGTAGATCTCAACGTCATTGAGGTTACAGTGGAGTTGAGAGAAGCACCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
*
17829694 ATCCTATACCCCTGAGTTATAGTGGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* ** * * * *
17829722 -GAATTAAAACAATGAAGTAGATCTCAATATCACTGAGGTTACAATAGAATGGAGTGAAGCACCA
1 AG-ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
** * *
17829786 AATCCTATACCCCTGAGTTACAATGAGTC
65 AATCCTATACCCCTGAGTTGTAGTGGGTC
* * **
17829815 AGATTAAAACAATGAACCAGATCTCAATGTCCCTGAGGTTACAGTGGAAAGGAGTGAAGC-CCAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* ***
17829879 ATCCTATATCCCTGAGTTACGGTGGGTC
66 ATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * * *
17829907 AAATTAAAA-ATATGAGGCAGATATTAATGTTCCTGAGGTTACAGTGGAGTGGAGTGAAGTACCA
1 AGATTAAAACA-ATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCA
* * * *
17829971 AATCCTATACCCTTAAGTTGTGGTGGGTT
65 AATCCTATACCCCTGAGTTGTAGTGGGTC
* * * * * *
17830000 GGATTAAAATAATGAGGCAGATCTCAACATCCCTGAGGTTACAGTAGAGTGGAGTGAAGCACTAA
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
**
17830065 ATCCTATACCCCTGAAGTTACAGTGGGTC
66 ATCCTATACCCCTG-AGTTGTAGTGGGTC
** * * * * * * * *
17830094 AGATTAATGCCA-GAAGCATATCTCGATGTCCTTGAGGTTATAGTGGAATAGAGTGAAGC
1 AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGC
17830153 TTCAACAACA
Statistics
Matches: 1263, Mismatches: 250, Indels: 74
0.80 0.16 0.05
Matches are distributed among these distances:
90 2 0.00
91 11 0.01
92 104 0.08
93 1025 0.81
94 57 0.05
95 10 0.01
96 3 0.00
99 37 0.03
100 14 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (93 bp):
AGATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
ATCCTATACCCCTGAGTTGTAGTGGGTC
Found at i:17829249 original size:43 final size:43
Alignment explanation
Indices: 17829108--17829253 Score: 116
Period size: 43 Copynumber: 3.2 Consensus size: 43
17829098 CATCTTTTAG
17829108 GTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGA
1 GTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGA
* * * * * * * * *
17829151 GTTGCAGTAG-GTCGGATTAAAATAATG-AGGCAAATCTCAACATCCTTGA
1 GTTACAGTGGAGT-GGAGT----GAA-GCA-CCAAATC-CTATACCCCTGA
17829200 GGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGA
1 -GTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGA
17829244 GTTACAGTGG
1 GTTACAGTGG
17829254 GTTCGATTAA
Statistics
Matches: 74, Mismatches: 18, Indels: 22
0.65 0.16 0.19
Matches are distributed among these distances:
42 2 0.03
43 22 0.30
44 8 0.11
45 7 0.09
46 3 0.04
47 3 0.04
48 7 0.09
49 8 0.11
50 12 0.16
51 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (43 bp):
GTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGA
Found at i:17830319 original size:42 final size:41
Alignment explanation
Indices: 17830260--17830512 Score: 200
Period size: 42 Copynumber: 6.0 Consensus size: 41
17830250 GTTACATCAG
* *
17830260 CATCCAGTCTTTTACCCCTAATCCAAAGAGGCAAATTGAAAC
1 CATCCAATCTTTTACCCCTAATCCAAAG-GGCAAATTGAAGC
* * * *
17830302 CATCCAATCTATTACCCCTAATCCAGAGGGGAAAATTAAAGCC
1 CATCCAATCTTTTACCCCTAATCCA-AAGGGCAAATTGAAG-C
* * ** * *
17830345 ACTATTCAGTCTTTTACCCCTAATTTAGAGGGACAGATTGAAGC
1 -C-ATCCAATCTTTTACCCCTAATCCAAAGGG-CAAATTGAAGC
* * ** *
17830389 CATCCAATCTTTTACCTCAAATTTAGATGGGCAAATTGAAGC
1 CATCCAATCTTTTACCCCTAATCCA-AAGGGCAAATTGAAGC
** * * *
17830431 CATTTAGTCTTTTACCCTTAATCCAAAGCGGCAGATTGAAGC
1 CATCCAATCTTTTACCCCTAATCCAAAG-GGCAAATTGAAGC
* * *
17830473 CATCCAATCTTTTACCCCTAACCCAGAGGGGCAGATTGAA
1 CATCCAATCTTTTACCCCTAATCCA-AAGGGCAAATTGAA
17830513 TTCACACACA
Statistics
Matches: 164, Mismatches: 39, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
41 2 0.01
42 122 0.74
43 9 0.05
44 5 0.03
45 26 0.16
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (41 bp):
CATCCAATCTTTTACCCCTAATCCAAAGGGCAAATTGAAGC
Found at i:17830505 original size:84 final size:86
Alignment explanation
Indices: 17830264--17830512 Score: 306
Period size: 87 Copynumber: 2.9 Consensus size: 86
17830254 CATCAGCATC
* * *
17830264 CAGTCTTTTACCCCTAATCCAAAGAGGCAAATTGAAACCATCCAATCTATTACCCCTAATCCAGA
1 CAGTCTTTTACCCCTAATCCAAAG-GGCAGATTGAAGCCATCCAATCTTTTACCCCTAATCCAGA
* *
17830329 GGGGAAAATTAAAGCCACTATT
65 GGGGCAAATTGAAGCCACTATT
** * * * **
17830351 CAGTCTTTTACCCCTAATTTAGAGGGACAGATTGAAGCCATCCAATCTTTTACCTCAAATTTAGA
1 CAGTCTTTTACCCCTAATCCAAAGGG-CAGATTGAAGCCATCCAATCTTTTACCCCTAATCCAGA
*
17830416 TGGGCAAATTGAAGCCA-T-TT
65 GGGGCAAATTGAAGCCACTATT
* *
17830436 -AGTCTTTTACCCTTAATCCAAAGCGGCAGATTGAAGCCATCCAATCTTTTACCCCTAACCCAGA
1 CAGTCTTTTACCCCTAATCCAAAG-GGCAGATTGAAGCCATCCAATCTTTTACCCCTAATCCAGA
*
17830500 GGGGCAGATTGAA
65 GGGGCAAATTGAA
17830513 TTCACACACA
Statistics
Matches: 136, Mismatches: 24, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
84 63 0.46
85 4 0.03
86 3 0.02
87 66 0.49
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (86 bp):
CAGTCTTTTACCCCTAATCCAAAGGGCAGATTGAAGCCATCCAATCTTTTACCCCTAATCCAGAG
GGGCAAATTGAAGCCACTATT
Found at i:17830914 original size:20 final size:19
Alignment explanation
Indices: 17830887--17830932 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
17830877 GTCTGGGCCC
17830887 AACAAAAATAAAACAAATAA
1 AACAAAAATAAAA-AAATAA
* *
17830907 ACCAAAAAATCAAAAAATAA
1 AAC-AAAAATAAAAAAATAA
17830927 AACAAA
1 AACAAA
17830933 CAAAAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 3 0.14
20 10 0.45
21 9 0.41
ACGTcount: A:0.78, C:0.13, G:0.00, T:0.09
Consensus pattern (19 bp):
AACAAAAATAAAAAAATAA
Found at i:17832485 original size:22 final size:22
Alignment explanation
Indices: 17832460--17832502 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
17832450 ATTTATACTT
*
17832460 ATTTTATT-TAATCTTTTTATTC
1 ATTTCATTATAAT-TTTTTATTC
*
17832482 ATTTCATTATTATTTTTTATT
1 ATTTCATTATAATTTTTTATT
17832503 TTAATATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (22 bp):
ATTTCATTATAATTTTTTATTC
Found at i:17835267 original size:13 final size:13
Alignment explanation
Indices: 17835249--17835274 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17835239 AAAAGCTTAG
17835249 TTTAGATTTTTCA
1 TTTAGATTTTTCA
17835262 TTTAGATTTTTCA
1 TTTAGATTTTTCA
17835275 ACATAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTTAGATTTTTCA
Found at i:17836781 original size:12 final size:12
Alignment explanation
Indices: 17836766--17836797 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
17836756 TTAAAAGTAG
17836766 TTTTCTTCTCGA
1 TTTTCTTCTCGA
17836778 TTTTCTTCTCGA
1 TTTTCTTCTCGA
17836790 TTTTCTTC
1 TTTTCTTC
17836798 AAGAACTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.25, G:0.06, T:0.62
Consensus pattern (12 bp):
TTTTCTTCTCGA
Found at i:17837994 original size:16 final size:16
Alignment explanation
Indices: 17837970--17838002 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
17837960 CACTTTTAAC
*
17837970 TTTATTTATTTATTAT
1 TTTAATTATTTATTAT
17837986 TTTAATTATTTATTAT
1 TTTAATTATTTATTAT
17838002 T
1 T
17838003 ATTTCTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTAATTATTTATTAT
Found at i:17852095 original size:29 final size:30
Alignment explanation
Indices: 17852049--17852140 Score: 87
Period size: 31 Copynumber: 3.1 Consensus size: 30
17852039 TAGTGAATTG
** *
17852049 AATAAAAACTTTGGAATATTTCAATGACTT
1 AATAAAAACTTTTAAATAGTTCAATGACTT
* **
17852079 -ATGAAAACTTTTAAATAGTTCGGTGACTT
1 AATAAAAACTTTTAAATAGTTCAATGACTT
* * *
17852108 AAATAAAAACTTTTAAATAATACAGTGACTT
1 -AATAAAAACTTTTAAATAGTTCAATGACTT
17852139 AA
1 AA
17852141 ATGAAACTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 23 0.46
30 2 0.04
31 25 0.50
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.35
Consensus pattern (30 bp):
AATAAAAACTTTTAAATAGTTCAATGACTT
Found at i:17852150 original size:30 final size:31
Alignment explanation
Indices: 17852082--17852150 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
17852072 ATGACTTATG
* * *
17852082 AAAACTTTTAAATAGTTCGGTGACTTAAATA
1 AAAACTTTTAAATAATACAGTGACTTAAATA
17852113 AAAACTTTTAAATAATACAGTGACTTAAAT-
1 AAAACTTTTAAATAATACAGTGACTTAAATA
*
17852143 GAAACTTT
1 AAAACTTT
17852151 CGAATAATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.21
31 27 0.79
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (31 bp):
AAAACTTTTAAATAATACAGTGACTTAAATA
Found at i:17852157 original size:30 final size:31
Alignment explanation
Indices: 17852082--17852163 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 31
17852072 ATGACTTATG
* * * *
17852082 AAAACTTTTAAATAGTTCGGTGACTTAAATA
1 AAAACTTTCAAATAATACAGTGACTTAAATA
*
17852113 AAAACTTTTAAATAATACAGTGACTTAAAT-
1 AAAACTTTCAAATAATACAGTGACTTAAATA
* * *
17852143 GAAACTTTCGAATAATTCAGT
1 AAAACTTTCAAATAATACAGT
17852164 AACCATTTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 17 0.39
31 27 0.61
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (31 bp):
AAAACTTTCAAATAATACAGTGACTTAAATA
Found at i:17858291 original size:16 final size:16
Alignment explanation
Indices: 17858270--17858302 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17858260 AATTAAAATT
17858270 AATAAAAT-AAATGAAA
1 AATAAAATGAAAT-AAA
17858286 AATAAAATGAAATAAA
1 AATAAAATGAAATAAA
17858302 A
1 A
17858303 CTAACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (16 bp):
AATAAAATGAAATAAA
Found at i:17862503 original size:30 final size:30
Alignment explanation
Indices: 17862462--17862518 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
17862452 TGAGGCAATA
*
17862462 TCGTCTTCTTTTTCTTTCTTC-TCTTCTTTC
1 TCGTCTTC-TTTTCTTTCATCTTCTTCTTTC
*
17862492 TCGTTTTCTTTTCTTTCATCTTCTTCT
1 TCGTCTTCTTTTCTTTCATCTTCTTCT
17862519 ACCTCAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.02, C:0.28, G:0.04, T:0.67
Consensus pattern (30 bp):
TCGTCTTCTTTTCTTTCATCTTCTTCTTTC
Found at i:17887296 original size:91 final size:90
Alignment explanation
Indices: 17887130--17887300 Score: 218
Period size: 91 Copynumber: 1.9 Consensus size: 90
17887120 GATATAATTC
* * * * * *
17887130 TTTTTTGGTAAAAGTTTCATTCACAGCAGTTTCATGATAAAATAATAATTTATAACAAGATGATA
1 TTTTTTGGTAAAAGTTACATCCACAACAATTTCATGATAAAATAATAATTTATAACAAGACGACA
17887195 CAATGAGTGAAACCGTCGTATTAGT
66 CAATGAGTGAAACCGTCGTATTAGT
* *
17887220 TTTTTTGGTAAAA-TTACCTCCACAACAATTTCATGATAATAATAATATTTTTATAACAAGACGA
1 TTTTTTGGTAAAAGTTACATCCACAACAATTTCATGATAA-AATAATA-ATTTATAACAAGACGA
* * *
17887284 CATAGTGGGTGAAACCG
64 CACAATGAGTGAAACCG
17887301 CTGTATCGCG
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
89 21 0.31
90 20 0.29
91 27 0.40
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (90 bp):
TTTTTTGGTAAAAGTTACATCCACAACAATTTCATGATAAAATAATAATTTATAACAAGACGACA
CAATGAGTGAAACCGTCGTATTAGT
Found at i:17889062 original size:22 final size:22
Alignment explanation
Indices: 17889032--17889074 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
17889022 GTAAGTTTGC
**
17889032 TTTTCTTAATTTTTTTAAATTA
1 TTTTCTTAATTTAGTTAAATTA
*
17889054 TTTTTTTAATTTAGTTAAATT
1 TTTTCTTAATTTAGTTAAATT
17889075 TCACTATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTCTTAATTTAGTTAAATTA
Found at i:17898196 original size:10 final size:10
Alignment explanation
Indices: 17898172--17898276 Score: 68
Period size: 10 Copynumber: 9.6 Consensus size: 10
17898162 TTTAATATAA
17898172 CACATATTAAT
1 CACAT-TTAAT
*
17898183 CACATTTGAT
1 CACATTTAAT
*
17898193 CACATATAAT
1 CACATTTAAT
17898203 CACATTTAAT
1 CACATTTAAT
*
17898213 CACA-TTAGT
1 CACATTTAAT
* *
17898222 CACATGAATATTT
1 CACAT--TTA-AT
17898235 CAACATTTATCACAT
1 C-ACA-TT-T-A-AT
17898250 CACATATTAAT
1 CACAT-TTAAT
17898261 CACATTTAAT
1 CACATTTAAT
17898271 CACATT
1 CACATT
17898277 AGTCACATGA
Statistics
Matches: 75, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
9 8 0.11
10 36 0.48
11 12 0.16
12 3 0.04
13 4 0.05
14 8 0.11
15 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.36
Consensus pattern (10 bp):
CACATTTAAT
Found at i:17898200 original size:30 final size:29
Alignment explanation
Indices: 17898166--17898284 Score: 115
Period size: 30 Copynumber: 4.1 Consensus size: 29
17898156 TAAGCATTTA
*
17898166 ATATAA-CACATATTAATCACATTTGATCAC
1 ATATAATCACAT-TTAATCACATTAG-TCAC
17898196 ATATAATCACATTTAATCACATTAGTCAC
1 ATATAATCACATTTAATCACATTAGTCAC
*
17898225 ATGAATATTTCAACATTT-ATCAC---A-TCAC
1 AT--ATA-ATC-ACATTTAATCACATTAGTCAC
17898253 ATATTAATCACATTTAATCACATTAGTCAC
1 ATA-TAATCACATTTAATCACATTAGTCAC
17898283 AT
1 AT
17898285 GAATATTTTA
Statistics
Matches: 75, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
25 6 0.08
26 8 0.11
27 2 0.03
28 6 0.08
29 8 0.11
30 24 0.32
31 8 0.11
32 7 0.09
33 6 0.08
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.35
Consensus pattern (29 bp):
ATATAATCACATTTAATCACATTAGTCAC
Found at i:17898204 original size:20 final size:20
Alignment explanation
Indices: 17898172--17898226 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
17898162 TTTAATATAA
*
17898172 CACATATTAATCACATTTGAT
1 CACATA-TAATCACATTTAAT
17898193 CACATATAATCACATTTAAT
1 CACATATAATCACATTTAAT
*
17898213 CACAT-TAGTCACAT
1 CACATATAATCACAT
17898227 GAATATTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.25
20 18 0.56
21 6 0.19
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.35
Consensus pattern (20 bp):
CACATATAATCACATTTAAT
Found at i:17898264 original size:68 final size:65
Alignment explanation
Indices: 17898180--17898363 Score: 193
Period size: 58 Copynumber: 2.8 Consensus size: 65
17898170 AACACATATT
17898180 AATCACATTTGATCACATATAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTAT
1 AATCACATTT-ATCACAT-TAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTAT
17898245 CA
64 CA
* * *
17898247 CATCAC----AT---ATTAATCACATTTAATCACATTAGTCACATGAATATTTTAGCATTTATCA
1 AATCACATTTATCACATTAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCA
* * * * *
17898305 AATGACATATTAATCACATTTAGTCACATTTAATTACATTTAATCAAATGAATATTTCA
1 AATCACAT-TT-ATCACA-TTAATCACATTTAATCACA-TTAGTCACATGAATATTTCA
17898364 GCACAAATCA
Statistics
Matches: 96, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
58 50 0.52
59 2 0.02
62 2 0.02
64 2 0.02
67 6 0.06
68 17 0.18
69 17 0.18
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (65 bp):
AATCACATTTATCACATTAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCA
Found at i:17898265 original size:58 final size:58
Alignment explanation
Indices: 17898191--17898334 Score: 236
Period size: 58 Copynumber: 2.5 Consensus size: 58
17898181 ATCACATTTG
*
17898191 ATCACATA-TAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCAC
1 ATCACATATTAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCAA
* *
17898248 ATCACATATTAATCACATTTAATCACATTAGTCACATGAATATTTTAGCATTTATCAA
1 ATCACATATTAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCAA
* *
17898306 ATGACATATTAATCACATTTAGTCACATT
1 ATCACATATTAATCACATTTAATCACATT
17898335 TAATTACATT
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 8 0.10
58 73 0.90
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (58 bp):
ATCACATATTAATCACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCAA
Found at i:17898275 original size:26 final size:26
Alignment explanation
Indices: 17898201--17898275 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 26
17898191 ATCACATATA
*
17898201 ATCACAT-TTAATCACA-TTAGTCAC
1 ATCACATATTAATCACATTTAATCAC
*
17898225 ATGA-ATATT--TCAACATTT-ATCAC
1 ATCACATATTAATC-ACATTTAATCAC
17898248 ATCACATATTAATCACATTTAATCAC
1 ATCACATATTAATCACATTTAATCAC
17898274 AT
1 AT
17898276 TAGTCACATG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
22 2 0.05
23 12 0.29
24 12 0.29
25 6 0.15
26 9 0.22
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.36
Consensus pattern (26 bp):
ATCACATATTAATCACATTTAATCAC
Found at i:17898333 original size:10 final size:10
Alignment explanation
Indices: 17898309--17898350 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
17898299 TTATCAAATG
17898309 ACATATTAATC
1 ACAT-TTAATC
*
17898320 ACATTTAGTC
1 ACATTTAATC
*
17898330 ACATTTAATT
1 ACATTTAATC
17898340 ACATTTAATC
1 ACATTTAATC
17898350 A
1 A
17898351 AATGAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (10 bp):
ACATTTAATC
Found at i:17898372 original size:23 final size:23
Alignment explanation
Indices: 17898346--17898432 Score: 102
Period size: 23 Copynumber: 3.8 Consensus size: 23
17898336 AATTACATTT
* * *
17898346 AATCAAATGAATATTTCAGCACA
1 AATCAAATTAATATTTAAGCATA
* *
17898369 AATCACATTAATAATTAAGCATA
1 AATCAAATTAATATTTAAGCATA
*
17898392 AATCATATTAATATTTAAGCATA
1 AATCAAATTAATATTTAAGCATA
* *
17898415 AATCACATTAATAATTAA
1 AATCAAATTAATATTTAA
17898433 CACATATAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.32
Consensus pattern (23 bp):
AATCAAATTAATATTTAAGCATA
Found at i:17898450 original size:10 final size:10
Alignment explanation
Indices: 17898411--17898497 Score: 78
Period size: 10 Copynumber: 9.3 Consensus size: 10
17898401 AATATTTAAG
17898411 CATA-AATCA
1 CATATAATCA
17898420 CAT-TAAT-A
1 CATATAATCA
17898428 -AT-TAA-CA
1 CATATAATCA
*
17898435 CATATAATCG
1 CATATAATCA
*
17898445 CATATAACCA
1 CATATAATCA
*
17898455 CATATAGTCA
1 CATATAATCA
*
17898465 CATATAATTA
1 CATATAATCA
17898475 CATATAATCA
1 CATATAATCA
* *
17898485 CTTTTAATCA
1 CATATAATCA
17898495 CAT
1 CAT
17898498 GGATATTTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
7 6 0.10
8 3 0.05
9 9 0.15
10 44 0.71
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (10 bp):
CATATAATCA
Found at i:17898740 original size:66 final size:66
Alignment explanation
Indices: 17898626--17898762 Score: 166
Period size: 66 Copynumber: 2.1 Consensus size: 66
17898616 AATATACGGA
* * ** * * * *
17898626 TCTCCAAACACACCAAATGACACATAGAGTTGAACATATCTCATAAGTGAAACATATATCTAACA
1 TCTCCAAACACACCAAAAGACACATAAAGTCAAACATATCCCAAAAGTGAAACATAAAGCTAACA
17898691 C
66 C
* * * *
17898692 TCTCCAAACACACCAAAAGACTCATAAAGTCAAACATGTCCCAAAAGTGAAGCGTAAAGCTAACA
1 TCTCCAAACACACCAAAAGACACATAAAGTCAAACATATCCCAAAAGTGAAACATAAAGCTAACA
17898757 C
66 C
17898758 TCTCC
1 TCTCC
17898763 TTATTTCCCC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (66 bp):
TCTCCAAACACACCAAAAGACACATAAAGTCAAACATATCCCAAAAGTGAAACATAAAGCTAACA
C
Found at i:17899066 original size:36 final size:37
Alignment explanation
Indices: 17899019--17899195 Score: 236
Period size: 36 Copynumber: 4.9 Consensus size: 37
17899009 AATCATTGTC
* * *
17899019 ACATGGCATGAAAAACATACCCACATTTTTACTGT-T
1 ACATGGCATGAATAACATACCCACATATTTACTATCT
* *
17899055 ACATGGCATGAATAACACACCTACATATTTACTATC-
1 ACATGGCATGAATAACATACCCACATATTTACTATCT
* *
17899091 ACATGGCATGAATAACATACCCACATATTTATTGTCT
1 ACATGGCATGAATAACATACCCACATATTTACTATCT
*
17899128 -CATGGCATGAATAACATACCCACATATTTATTATCT
1 ACATGGCATGAATAACATACCCACATATTTACTATCT
* *
17899164 -CGTGGCATGAATAACATACCCACATGTTTACT
1 ACATGGCATGAATAACATACCCACATATTTACT
17899196 TTCACAATAG
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
36 126 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.31
Consensus pattern (37 bp):
ACATGGCATGAATAACATACCCACATATTTACTATCT
Found at i:17899134 original size:72 final size:72
Alignment explanation
Indices: 17899017--17899195 Score: 261
Period size: 72 Copynumber: 2.5 Consensus size: 72
17899007 ATAATCATTG
* * *
17899017 TCACATGGCATGAAAAACATACCCACATTTTTACTGTTACATGGCATGAATAACACACCTACATA
1 TCACATGGCATGAATAACATACCCACATATTTACTGTTACATGGCATGAATAACACACCCACATA
17899082 TTTACTA
66 TTTACTA
* *
17899089 TCACATGGCATGAATAACATACCCACATATTTATTGTCT-CATGGCATGAATAACATACCCACAT
1 TCACATGGCATGAATAACATACCCACATATTTACTGT-TACATGGCATGAATAACACACCCACAT
*
17899153 ATTTATTA
65 ATTTACTA
* * *
17899161 TCTCGTGGCATGAATAACATACCCACATGTTTACT
1 TCACATGGCATGAATAACATACCCACATATTTACT
17899196 TTCACAATAG
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
72 95 0.99
73 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (72 bp):
TCACATGGCATGAATAACATACCCACATATTTACTGTTACATGGCATGAATAACACACCCACATA
TTTACTA
Found at i:17906924 original size:92 final size:95
Alignment explanation
Indices: 17906817--17906994 Score: 220
Period size: 94 Copynumber: 1.9 Consensus size: 95
17906807 CAGACATATT
* * *
17906817 TTTTTTTGGTTAAAATTATCCTCACA-ACAGTTTCATAATAATAA-AATAATA-TTTTATAACAA
1 TTTTTTTGATTAAAATTATCCTCACAGA-AATTTCATAATAAAAACAATAATATTTTTATAACAA
* * *
17906879 GATGACATAATGGGTGAAACCGTCGTATCAA
65 AATGACACAATGGATGAAACCGTCGTATCAA
* ** * *
17906910 TTTTTTT-ATTAAAATTGTTTTCATAGAAATTTCATGATAAAAACAATAATATTTTTATAACAAA
1 TTTTTTTGATTAAAATTATCCTCACAGAAATTTCATAATAAAAACAATAATATTTTTATAACAAA
17906974 ATGACACAATGGATGAAACCG
66 ATGACACAATGGATGAAACCG
17906995 CCATATCACC
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
92 26 0.37
93 15 0.21
94 30 0.42
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (95 bp):
TTTTTTTGATTAAAATTATCCTCACAGAAATTTCATAATAAAAACAATAATATTTTTATAACAAA
ATGACACAATGGATGAAACCGTCGTATCAA
Found at i:17911688 original size:472 final size:472
Alignment explanation
Indices: 17910798--17911721 Score: 1677
Period size: 472 Copynumber: 2.0 Consensus size: 472
17910788 ATCGAGTCGA
17910798 ATCGAATTGAGTCAAAAAATTTCGAGTTAGTCAAGTTGACGAATCCTATTTTTTCAACCGAACTC
1 ATCGAATTGAGTCAAAAAATTTCGAGTTAGTCAAGTTGACGAATCCTATTTTTTCAACCGAACTC
*
17910863 AATTTGAAATATTTTCGAATCGAATCAAATCAAGTCAAAAAATTTCTAGGCGAGTTGGCGAATCC
66 AATTTGAAATATTTTCGAATCGAATCAAATCAAGTCAAAAAATTTCTAGGCGAGTTAGCGAATCC
* *
17910928 TAATATTTATACTCAATGTTGCGTTTACATGGACCGATTATTTAACTAGTAGACGAAGTACAAGA
131 TAATATTTATACTCAATGTTACGTTTACATGGACCAATTATTTAACTAGTAGACGAAGTACAAGA
17910993 TTATTTAACTACATAAAAAATATAATGGGTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAA
196 TTATTTAACTACATAAAAAATATAATGGGTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAA
* *
17911058 ATGACGTAATTTTGCCTTTTAACTTAATGTTTTTGACTTTTAACTTTAGAAAATGTAAACATTTA
261 ATGACGTAATTTTGCCTTTTAACTCAATGTTTTTGACTTTTAACTTTAGAAAATATAAACATTTA
*
17911123 TCAAAACGACGTAGTTTTGCCTTTTCTTATTTGGATTTTTGGATAACTCGAATTGTGTAATTTAT
326 TCAAAACGACGTAGTTTTGCCTTTTCTTATTCGGATTTTTGGATAACTCGAATTGTGTAATTTAT
* * *
17911188 ATTCGAGTTAAATCGAAAAACCTAATTTTTTATTCGAGTTGATCCGAATAACTCAAATAACTTGA
391 ATTCGAGTTAAACCGAAAAACCTAATTTTTTATCCGAGTTGATCCAAATAACTCAAATAACTTGA
17911253 ACTATTTAATTCAAAAT
456 ACTATTTAATTCAAAAT
* *
17911270 ATCGAATTGAGTCAAAAAATTTTGAGTTAGTCAAGTTGACGAATCCTATTTTTTCAATCGAACTC
1 ATCGAATTGAGTCAAAAAATTTCGAGTTAGTCAAGTTGACGAATCCTATTTTTTCAACCGAACTC
*
17911335 AATTTGAAATATTTTCGAATCGAATCAAATCAAGTCAAAAAATTTCTAGTCGAGTTAGCGAATCC
66 AATTTGAAATATTTTCGAATCGAATCAAATCAAGTCAAAAAATTTCTAGGCGAGTTAGCGAATCC
17911400 TAATATTTATACTCAATGTTACGTTTACATGGACCAATTATTTAACTAGTAGACGAAGTACAAGA
131 TAATATTTATACTCAATGTTACGTTTACATGGACCAATTATTTAACTAGTAGACGAAGTACAAGA
*
17911465 TTATTTAACTACATAAACAATATAATGGGTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAA
196 TTATTTAACTACATAAAAAATATAATGGGTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAA
* *
17911530 ATGACGTAATTTTGCCTTTTAACTCAATGTTTTTTACTTTTAATTTTAGAAAATATAAACATTTA
261 ATGACGTAATTTTGCCTTTTAACTCAATGTTTTTGACTTTTAACTTTAGAAAATATAAACATTTA
17911595 TCAAAACGACGTAGTTTTGCCTTTTCTTATTCGGATTTTTGGATAACTCGAATTGTGTAATTTAT
326 TCAAAACGACGTAGTTTTGCCTTTTCTTATTCGGATTTTTGGATAACTCGAATTGTGTAATTTAT
* * * *
17911660 ATTCGAGTTAAACCGAAAAGCTTAATTTTTTATCCGAGTTTATCCAAATAACTCAATTAACT
391 ATTCGAGTTAAACCGAAAAACCTAATTTTTTATCCGAGTTGATCCAAATAACTCAAATAACT
17911722 CAAATAACTT
Statistics
Matches: 433, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
472 433 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (472 bp):
ATCGAATTGAGTCAAAAAATTTCGAGTTAGTCAAGTTGACGAATCCTATTTTTTCAACCGAACTC
AATTTGAAATATTTTCGAATCGAATCAAATCAAGTCAAAAAATTTCTAGGCGAGTTAGCGAATCC
TAATATTTATACTCAATGTTACGTTTACATGGACCAATTATTTAACTAGTAGACGAAGTACAAGA
TTATTTAACTACATAAAAAATATAATGGGTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAA
ATGACGTAATTTTGCCTTTTAACTCAATGTTTTTGACTTTTAACTTTAGAAAATATAAACATTTA
TCAAAACGACGTAGTTTTGCCTTTTCTTATTCGGATTTTTGGATAACTCGAATTGTGTAATTTAT
ATTCGAGTTAAACCGAAAAACCTAATTTTTTATCCGAGTTGATCCAAATAACTCAAATAACTTGA
ACTATTTAATTCAAAAT
Found at i:17913657 original size:279 final size:278
Alignment explanation
Indices: 17913086--17914250 Score: 1377
Period size: 279 Copynumber: 4.2 Consensus size: 278
17913076 TTGATTATTC
* * * *
17913086 CATGTGACTGAGCTACTTGTCTTTGCCAGGGAGAATCTTCTTTGAGTTT-ATCGATTT-TTTTTT
1 CATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGA-TTTCATCGATTTGTTTTTT
* * *
17913149 TCTCAAACTTAAGACGCCC-ATTTGAGTGCTACGAGTAAATAAAAAT-AAGGGACGAAATTCGCG
65 TCTCAAACTTAAGAC-CCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCGCG
* * * *
17913212 CAAATTAATAAGTACAAGGATTATTATTAGAATTTAACCTAAAATAATATTTGTTTCAGAT-GAC
129 CAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCA-TTCGAC
* * *
17913276 TCTGACAAGCGACGTTCTTGAT-TAAAAAATAATAATTTCTTTTTTATTTTAAAATTGCCATCTA
193 TCTGACACGCG-CGTTCTTGATATAAAAAATAATAA-TTCTTTTTTATCTTAAAACTGCCATCTA
*
17913340 ACGCGACAGTTTCAAGATATTTG
256 ACGCGACAGTTTCAAGATAATTG
* *
17913363 CATGTGACTGAGCTGCTAGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTTCT
1 CATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA-TTTGTTTT-T
* * * * *
17913428 TTCTCAAATTTAAGACCCCAATTTGAATACTATGAGTAAATAAAAATAAAGGGACCGAATCCGAG
64 TTCTCAAACTTAAGACCCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCGCG
* * *
17913493 CAAATCAATAAGTAAAAGGACTATTTTTACAATTTAACCTAAAATAATATTTGTTTCATTCGACT
129 CAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCATTCGACT
* * * *
17913558 CTGACATGCAGCGTTTTTAATATAAAAAATAATAA-T-TTTTTTATCTTAAAATTGCCATCTAAC
194 CTGACACGC-GCGTTCTTGATATAAAAAATAATAATTCTTTTTTATCTTAAAACTGCCATCTAAC
* *
17913621 GTGACAGTTTCAATATAATTG
258 GCGACAGTTTCAAGATAATTG
* * * *
17913642 CATGTGA-TCGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC-A-ATATTTTTT
1 CATGTGACT-GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTGTTTTTT
* * * * * *
17913704 TCTCAAACTTAATACACCAATTTGAATGCTACAAGTAATTAAAAATAGAGGGACCAAATCCGTGC
65 TCTCAAACTTAAGACCCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCGCGC
* * * *
17913769 AAATCAATAAGTACGAGGACTATTCTAAGAATTTAACCTAAAATAATATTTTTTTC-TCTCAACT
130 AAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAT-TCGACT
* *** *
17913833 CTGACACGCCGCGTTCTTGATATAAAAAAGTAAT--TTCTTTTTTATTTTAAAACAAACATCTTA
194 CTGACACG-CGCGTTCTTGATATAAAAAA-TAATAATTCTTTTTTATCTTAAAACTGCCATCTAA
* * *
17913896 CGCGGCGGTTTCGAGATAATTG
257 CGCGACAGTTTCAAGATAATTG
* * * *
17913918 CATGTGACTGAGTTGCTTGTATTTAGCAGGGAGATTCTTCTTAGATTTCATCTATTTTGTTTTTT
1 CATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA-TTTGTTTTTT
*** * * * *
17913983 TCTCAAACTTAAGAGGTCAATTTCATTGCTACGAGTAAATAAAAATAGAGGGACCAAATCTGCGC
65 TCTCAAACTTAAGACCCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCGCGC
* * *
17914048 AAATCAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATAATTGTTTCACTCGACTC
130 AAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCATTCGACTC
* * * * *
17914113 TGACACGCGGCGTTCTTGATATAACAAATAACAAATTCTTTTTTATCTTAAGACTGCTATCTTAC
195 TGACACGC-GCGTTCTTGATATAAAAAATAA-TAATTCTTTTTTATCTTAAAACTGCCATCTAAC
* * *
17914178 GCGGCGGTTTTAAGATAATTG
258 GCGACAGTTTCAAGATAATTG
* * * * *
17914199 CGTGTGACTGAGCTACTTGTTTTTGGCAGGGAGATTCTTCGTCGATTTCATC
1 CATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATC
17914251 AATGTAGAAA
Statistics
Matches: 759, Mismatches: 105, Indels: 44
0.84 0.12 0.05
Matches are distributed among these distances:
274 1 0.00
275 137 0.18
276 95 0.13
277 46 0.06
278 9 0.01
279 241 0.32
280 42 0.06
281 174 0.23
282 14 0.02
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (278 bp):
CATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTGTTTTTTT
CTCAAACTTAAGACCCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCGCGCA
AATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCATTCGACTCT
GACACGCGCGTTCTTGATATAAAAAATAATAATTCTTTTTTATCTTAAAACTGCCATCTAACGCG
ACAGTTTCAAGATAATTG
Found at i:17915269 original size:59 final size:57
Alignment explanation
Indices: 17915206--17915498 Score: 214
Period size: 59 Copynumber: 5.0 Consensus size: 57
17915196 ACATCCAGAA
* * ** *
17915206 GTAAAATGATACTTTTTGGAAGAATCAGGGTCAAAAATGGAATTTTTGGTAGTTCGGGG
1 GTAAAATG-TACTTTTTGGAAAAATC-GGGTCAAAAATAGAATTTTTGAAAGTTCAGGG
* * *
17915265 GTAAAATG-GCTTTGTTGGAAAAATCGAGGTTAAAAATAGAATTTTTGAAAGTTTAGGG
1 GTAAAATGTACTTT-TTGGAAAAATCG-GGTCAAAAATAGAATTTTTGAAAGTTCAGGG
* *
17915323 GTAAAATGGTAATTTTTGGAAAAATCGGGGTCAAAAATAGAATTTTTAGAAA-TTTAGGG
1 GTAAAAT-GTACTTTTTGGAAAAATC-GGGTCAAAAATAGAATTTTT-GAAAGTTCAGGG
* * * * ** * * * * *
17915382 TTAAAAATGTAATTTTTGTAAAATTCAAAGTCGAATATGGAATTTTGGAAAATTCAGGG
1 GT-AAAATGTACTTTTTGGAAAAATC-GGGTCAAAAATAGAATTTTTGAAAGTTCAGGG
* * * * * * *
17915441 GTAAAAATGTAATTTTTGTAAAATTTAGGGTC-AAAATGGAATTTTAGAAAGTTTAGGG
1 GT-AAAATGTACTTTTTGGAAAA-ATCGGGTCAAAAATAGAATTTTTGAAAGTTCAGGG
17915499 ACCTTCTAGG
Statistics
Matches: 195, Mismatches: 30, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
57 5 0.03
58 68 0.35
59 107 0.55
60 15 0.08
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (57 bp):
GTAAAATGTACTTTTTGGAAAAATCGGGTCAAAAATAGAATTTTTGAAAGTTCAGGG
Found at i:17915314 original size:29 final size:31
Alignment explanation
Indices: 17915282--17915405 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 31
17915272 GGCTTTGTTG
17915282 GAAAAATCGA-GGTTAAAAATAG-AATTTTT
1 GAAAAATCGAGGGTTAAAAATAGTAATTTTT
* ** * *
17915311 G-AAAGTTTAGGGGT-AAAATGGTAATTTTT
1 GAAAAATCGAGGGTTAAAAATAGTAATTTTT
*
17915340 GGAAAAATCG-GGGTCAAAAATAG-AATTTTT
1 -GAAAAATCGAGGGTTAAAAATAGTAATTTTT
* **
17915370 -AGAAATTTAGGGTTAAAAAT-GTAATTTTT
1 GAAAAATCGAGGGTTAAAAATAGTAATTTTT
*
17915399 GTAAAAT
1 GAAAAAT
17915406 TCAAAGTCGA
Statistics
Matches: 70, Mismatches: 17, Indels: 15
0.69 0.17 0.15
Matches are distributed among these distances:
28 17 0.24
29 28 0.40
30 15 0.21
31 10 0.14
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (31 bp):
GAAAAATCGAGGGTTAAAAATAGTAATTTTT
Found at i:17915384 original size:88 final size:86
Alignment explanation
Indices: 17915292--17915498 Score: 201
Period size: 88 Copynumber: 2.3 Consensus size: 86
17915282 GAAAAATCGA
17915292 GGTTAAAAATAGAATTTTTGAAAGTTTAGGGGT-AAAATGGTAATTTTTGGAAAAATC-GGGGTC
1 GGTTAAAAAT-GAATTTTTGAAAGTTTAGGGGTCAAAATGG-AA-TTTTGGAAAAATCAGGGGT-
17915355 AAAAATAG-AATTTTT-AGAAATTTAG
62 AAAAAT-GTAATTTTTGA-AAATTTAG
* * ** * *
17915380 GGTTAAAAATGTAATTTTTGTAAAATTCA-AAGTCGAATATGGAATTTTGGAAAATTCAGGGGTA
1 GGTTAAAAATG-AATTTTTG-AAAGTTTAGGGGTC-AAAATGGAATTTTGGAAAAATCAGGGGTA
17915444 AAAATGTAATTTTTGTAAAATTTAG
63 AAAATGTAATTTTTG-AAAATTTAG
* *
17915469 GG-TCAAAATGGAATTTTAGAAAGTTTAGGG
1 GGTTAAAAAT-GAATTTTTGAAAGTTTAGGG
17915499 ACCTTCTAGG
Statistics
Matches: 97, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
87 8 0.08
88 58 0.60
89 24 0.25
90 7 0.07
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (86 bp):
GGTTAAAAATGAATTTTTGAAAGTTTAGGGGTCAAAATGGAATTTTGGAAAAATCAGGGGTAAAA
ATGTAATTTTTGAAAATTTAG
Found at i:17915454 original size:29 final size:29
Alignment explanation
Indices: 17915295--17915490 Score: 100
Period size: 29 Copynumber: 6.7 Consensus size: 29
17915285 AAATCGAGGT
* * *
17915295 TAAAAATAG-AATTTTTGAAAGTTTAGGGG
1 TAAAAAT-GTAATTTTGGAAAATTCAGGGG
*
17915324 T-AAAATGGTAATTTTTGGAAAAATC-GGGG
1 TAAAAAT-GTAA-TTTTGGAAAATTCAGGGG
* * *
17915353 TCAAAAATAG-AATTTT-TAGAAATTTAGGGT
1 T-AAAAAT-GTAATTTTGGA-AAATTCAGGGG
* **
17915383 TAAAAATGTAATTTTTGTAAAATTCA-AAG
1 TAAAAATGTAA-TTTTGGAAAATTCAGGGG
* * *
17915412 TCGAATATGGAATTTTGGAAAATTCAGGGG
1 T-AAAAATGTAATTTTGGAAAATTCAGGGG
* *
17915442 TAAAAATGTAATTTTTGTAAAATTTA-GGG
1 TAAAAATGTAA-TTTTGGAAAATTCAGGGG
* * *
17915471 TCAAAATGGAATTTTAGAAA
1 TAAAAATGTAATTTTGGAAA
17915491 GTTTAGGGAC
Statistics
Matches: 126, Mismatches: 29, Indels: 25
0.70 0.16 0.14
Matches are distributed among these distances:
28 15 0.12
29 57 0.45
30 46 0.37
31 8 0.06
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (29 bp):
TAAAAATGTAATTTTGGAAAATTCAGGGG
Found at i:17917522 original size:17 final size:16
Alignment explanation
Indices: 17917497--17917544 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 16
17917487 GTTTAAAATT
*
17917497 ATTTCAAATTTATACTAA
1 ATTT-AAATTTAAAC-AA
17917515 ATTTAAATTTAAAACAA
1 ATTTAAATTT-AAACAA
17917532 ATTTAAATTTAAA
1 ATTTAAATTTAAA
17917545 AATGAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 3 0.11
17 18 0.64
18 7 0.25
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTTAAATTTAAACAA
Found at i:17917523 original size:6 final size:6
Alignment explanation
Indices: 17917512--17917580 Score: 52
Period size: 6 Copynumber: 11.8 Consensus size: 6
17917502 AAATTTATAC
* * ** * *
17917512 TAAATT TAAATT TAAA-A CAAATT TAAATT TAAAAA TGAATT TTAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
17917559 TAAATT TTAA-G TAAATT TAAAT
1 TAAATT TAAATT TAAATT TAAAT
17917581 CTAGAAATAA
Statistics
Matches: 46, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
5 6 0.13
6 40 0.87
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (6 bp):
TAAATT
Found at i:17917562 original size:18 final size:17
Alignment explanation
Indices: 17917513--17917545 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
17917503 AATTTATACT
17917513 AAATTTAAATTTAAAAC
1 AAATTTAAATTTAAAAC
17917530 AAATTTAAATTTAAAA
1 AAATTTAAATTTAAAA
17917546 ATGAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTTAAATTTAAAAC
Found at i:17918178 original size:102 final size:102
Alignment explanation
Indices: 17917881--17918534 Score: 1089
Period size: 102 Copynumber: 6.4 Consensus size: 102
17917871 TGATGTCGAG
*
17917881 GCTTCATCTTGGTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
* * * *
17917946 TACTACAACTTCAAGAGGATAGAAATTGACG-TTAAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * *
17917982 GCTTCATCTTGTTGTTACTACAACTTCAGAGAGATAAAGACTTACTATT-TTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
* *
17918046 TATTGCAACTTCAAAAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
*
17918083 GCTTCATCTTGCTCTTGCTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
17918148 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* *
17918185 GCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCTATTATTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
17918250 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* *
17918287 GCTTCATCTTACTCTTGCTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
* *
17918352 TATTGCAACTTCAAGAGGATAAGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
*
17918389 ACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
* *
17918454 TACTGCAACTTCAAGAGGATAGGAATTGACG-TTAAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* *
17918490 GCTTCATCTTGCTCTTACTGCAACTTCAGAAAGATAAAGACTTGC
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGC
17918535 CATCGTAGTT
Statistics
Matches: 517, Mismatches: 34, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
100 41 0.08
101 141 0.27
102 335 0.65
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (102 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCAACTT
TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
Found at i:17918722 original size:48 final size:48
Alignment explanation
Indices: 17918662--17919877 Score: 943
Period size: 48 Copynumber: 24.9 Consensus size: 48
17918652 TCCCTTCAAA
* * * *
17918662 TCTTCGTGGTACTGGATCTGCTGTTGCGGGTTAGATCTTTCCTTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17918710 TCTTCGTGGTACTAGATTCTCCATTGCGGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17918758 TCTTCGCGGTACTGGAT-CACCGTTGTGGTCTTAGATCTTTCCCGTCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCC-TTGTG
* * * *
17918807 TTTTTGTGGTACTGGATCCGCCG-TGCAGCTTAGATCTTTCCTTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17918854 TCTTCGTGGTACTGGATCAGCCGTCGTGGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17918902 TCTTTGTGGTACTGG-TCCGCCGTTGTGGCTTTGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17918949 TCTTCGCGGTACTAGATCCTCCGTTGCGGTCTTAAATCTTT-CCTGTCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCCT-T-GTG
* * * *
17918999 TTTTTGTGGTACTGGATCCACCATTGCGGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17919047 TCTTCGTTGTACTGGATCCGCCATCGCGGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* ** *
17919095 TCTTCATGGTACTGGATCCGCTATTGCGGATTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17919143 TCTTCGTGGTACTGGATCCGCCATTGCGATCTTAGATCTTTCCCGTCGTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCG-GCTTAGATCTTTCCC-TTGT-G
* ** * * *
17919194 T-TTTGTGGTACTAAATCCGCCATCGCAGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17919241 TCTTCGTGGTACTGGATCCGTCATTACGGTCTTAGATCTTTCCCATCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCC-TTGTG
* * * * * * * *
17919291 TTTTTGTGGTACTAGATCCACCATTACGGTTTAGATGTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17919339 TCTTCGCGATACTGGA-CTCGCCGTTGCAGTCTTAGATCTTTCCCGTCGTG
1 TCTTCGTGGTACTGGATC-CGCCGTTGC-GGCTTAGATCTTTCCC-TTGTG
* * * * *
17919389 TTTTTGTGGTACTGGATCCGCCGTTGCAGTTTAGATCTTTCCCTTGTA
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
** * * * * *
17919437 TCTTCAAGGTACTAGATTCGTCGTTGCAGTCTTAGATCTTTCCCGTCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGC-GGCTTAGATCTTTCCC-TTGTG
* * * * * *
17919487 TTTTTGTGGTACTGGATCTGTCGTTACGGCTTAGAGCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * *
17919535 TCTTCGTGGTACTGGATCCGCTGTTACGGTCTTAGATCTTTCTCGTCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTC-CCTTGTG
*** * * * * * * *
17919585 TCTTTAAGGTACAAGG-TTCGCCGTTGCGACTTAAACCCTTTCCTTTTGTA
1 TCTTCGTGGTAC-TGGATCCGCCGTTGCGGCTTAGA-TCTTTCC-CTTGTG
* * *
17919635 TCTTTGCGGTACTGGATCCGCCGTTGCGGTCTTCGATCTTT-CC-TGCCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCCTTG---TG
* * * * * * *
17919685 TCTGT-GAGGTA-TAAGG-TTCGCCGTTGCGACTTAAACCCTTCCCTTTTGTA
1 TCT-TCGTGGTACT--GGATCCGCCGTTGCGGCTTAGATCTTTCCC--TTGTG
* * **
17919735 TCTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCC-TTGTG
* * * * *
17919785 TC-TCTGAGGTA-TAAGG-TTCGCCGTTGCGACTTAAACCTTTCCCTT-TG
1 TCTTC-GTGGTACT--GGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17919832 CATCTTTGTTGTACTAGATCCGCCGTTGCGGTCTTAGATCTTTCCC
1 --TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCC
17919878 GTCGTGTTTC
Statistics
Matches: 924, Mismatches: 193, Indels: 100
0.76 0.16 0.08
Matches are distributed among these distances:
47 80 0.09
48 342 0.37
49 210 0.23
50 264 0.29
51 26 0.03
53 2 0.00
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (48 bp):
TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
Found at i:17919043 original size:98 final size:98
Alignment explanation
Indices: 17918662--17919886 Score: 1195
Period size: 98 Copynumber: 12.5 Consensus size: 98
17918652 TCCCTTCAAA
* * * * * * * *
17918662 TCTTCGTGGTACTGGATCTGCTGTTGCGG-GTTAGATCTTT-CCTTTGTGTCTTCGTGGTACTAG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* * *
17918725 ATTCTCCATTGCGGCTTAGATCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17918758 TCTTCGCGGTACTGGAT-CACCGTTGTGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* *
17918822 ATCCGCCG-TGCAGCTTAGATCTTTCCTTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * * *
17918854 TCTTCGTGGTACTGGATCAGCCGTCGTGG-CTTAGATCTTTCCC-TTGTGTCTTTGTGGTACTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* *
17918917 -TCCGCCGTTGTGGCTTTGATCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * * *
17918949 TCTTCGCGGTACTAGATCCTCCGTTGCGGTCTTAAATCTTTCCTGTCGTGTTTTTGTGGTACTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* *
17919014 ATCCACCATTGCGGCTTAGATCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * * * **
17919047 TCTTCGTTGTACTGGATCCGCCATCGCGG-CTTAGATCTTTCCC-TTGTGTCTTCATGGTACTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
** *
17919110 ATCCGCTATTGCGGATTAGATCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * **
17919143 TCTTCGTGGTACTGGATCCGCCATTGCGATCTTAGATCTTTCCCGTCGTGGTTTTGTGGTACTAA
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* * *
17919208 ATCCGCCATCGCAGCTTAGATCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * * *
17919241 TCTTCGTGGTACTGGATCCGTCATTACGGTCTTAGATCTTTCCCATCGTGTTTTTGTGGTACTAG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* * * * *
17919306 ATCCACCATTACGGTTTAGATGTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17919339 TCTTCGCGATACTGGA-CTCGCCGTTGCAGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTG
1 TCTTCGTGGTACTGGATC-CGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTG
* * *
17919403 GATCCGCCGTTGCAGTTTAGATCTTTCCCTTGTA
65 GATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
** * * * *
17919437 TCTTCAAGGTACTAGATTCGTCGTTGCAGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
* * * *
17919502 ATCTGTCGTTACGGCTTAGAGCTTTCCCTTGTG
66 ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * * * ** *
17919535 TCTTCGTGGTACTGGATCCGCTGTTACGGTCTTAGATCTTTCTCGTCGTGTCTTTAAGGTACAAG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTAC-TG
* * * * * *
17919600 G-TTCGCCGTTGCGACTTAAACCCTTTCCTTTTGTA
65 GATCCGCCGTTGCGGCTTAGA-TCTTTCC-CTTGTG
* * * * * * * * *
17919635 TCTTTGCGGTACTGGATCCGCCGTTGCGGTCTTCGATCTTTCCTGCCATGTCTGTGAGGTA-TAA
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACT--
* * * * * *
17919699 GG-TTCGCCGTTGCGACTTAAACCCTTCCCTTTTGTA
64 GGATCCGCCGTTGCGGCTTAGATCTTTCCC--TTGTG
* * * * * *
17919735 TCTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTCTGAGGTA-TAA
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACT--
* * * *
17919799 GG-TTCGCCGTTGCGACTTAAACCTTTCCCTT-TG
64 GGATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
* * *
17919832 CATCTTTGTTGTACTAGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTT
1 --TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTT
17919887 CATGGTGCTG
Statistics
Matches: 954, Mismatches: 155, Indels: 37
0.83 0.14 0.03
Matches are distributed among these distances:
94 7 0.01
95 68 0.07
96 162 0.17
97 77 0.08
98 410 0.43
99 62 0.06
100 168 0.18
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (98 bp):
TCTTCGTGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTGTGGTACTGG
ATCCGCCGTTGCGGCTTAGATCTTTCCCTTGTG
Found at i:17919715 original size:100 final size:100
Alignment explanation
Indices: 17919542--17919876 Score: 503
Period size: 100 Copynumber: 3.4 Consensus size: 100
17919532 GTGTCTTCGT
* * * * * *
17919542 GGTACTGGATCCGCTGTTACGGTCTTAGATCTTT-CTCGTCGTGTCTTTAAGGTACAAGGTTCGC
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCT-GTCATGTCTCTGAGGTATAAGGTTCGC
17919606 CGTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGC
65 CGTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGC
* * *
17919642 GGTACTGGATCCGCCGTTGCGGTCTTCGATCTTTCCTGCCATGTCTGTGAGGTATAAGGTTCGCC
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCTGTCATGTCTCTGAGGTATAAGGTTCGCC
*
17919707 GTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGC
66 GTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGC
*
17919742 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTCTGAGGTATAAGGTTCGCC
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCTGTCATGTCTCTGAGGTATAAGGTTCGCC
* * *
17919807 GTTGCGACTTAAA-CCTTTCCCTTTGCATCTTTGT
66 GTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGC
* *
17919841 TGTACTAGATCCGCCGTTGCGGTCTTAGATCTTTCC
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCC
17919877 CGTCGTGTTT
Statistics
Matches: 215, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
99 51 0.24
100 162 0.75
101 2 0.01
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (100 bp):
GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCTGTCATGTCTCTGAGGTATAAGGTTCGCC
GTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGC
Found at i:17919757 original size:50 final size:50
Alignment explanation
Indices: 17919603--17919861 Score: 147
Period size: 50 Copynumber: 5.2 Consensus size: 50
17919593 GTACAAGGTT
* *
17919603 CGCCGTTGCGACTTAAACCCTTTCCTTTTGTATCTTTGCGGTACTGGATC
1 CGCCGTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGAGGTACTGGATC
* ** * * **** * * *
17919653 CGCCGTTGCGGTCTTCGA-TCTTTCCTGCCATGTCTGTGAGGTA-TAAGG-TT
1 CGCCGTTGC-GACTTAAACCCTTCCCTTTTGTATCTTTGAGGTACT--GGATC
*
17919703 CGCCGTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGCGGTACTGGATC
1 CGCCGTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGAGGTACTGGATC
* * * * ** * *
17919753 CGCCGTTGCGGTCTTAGATCTTTCCCGTCATG--TCTCTGAGGTA-TAAGG-TT
1 CGCCGTTGC-GACTTAAACCCTTCCC-TTTTGTATCTTTGAGGTACT--GGATC
* * ** *
17919803 CGCCGTTGCGACTTAAACCTTTCCC-TTTGCATCTTTGTTGTACTAGATC
1 CGCCGTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGAGGTACTGGATC
17919852 CGCCGTTGCG
1 CGCCGTTGCG
17919862 GTCTTAGATC
Statistics
Matches: 151, Mismatches: 44, Indels: 29
0.67 0.20 0.13
Matches are distributed among these distances:
47 2 0.01
48 1 0.01
49 41 0.27
50 82 0.54
51 22 0.15
52 3 0.02
ACGTcount: A:0.14, C:0.27, G:0.23, T:0.36
Consensus pattern (50 bp):
CGCCGTTGCGACTTAAACCCTTCCCTTTTGTATCTTTGAGGTACTGGATC
Found at i:17921118 original size:15 final size:15
Alignment explanation
Indices: 17921098--17921131 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
17921088 CGACCTCTCC
*
17921098 TTTTTTTCTTTTCTT
1 TTTTTTTCTCTTCTT
17921113 TTTTTTTCTCTTCTT
1 TTTTTTTCTCTTCTT
17921128 TTTT
1 TTTT
17921132 ATTTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTCTCTTCTT
Found at i:17926948 original size:59 final size:58
Alignment explanation
Indices: 17926854--17927178 Score: 243
Period size: 59 Copynumber: 5.6 Consensus size: 58
17926844 GGAAAGTTCA
* * * * * *
17926854 AGGTCAAAAAAGGAATTTTTAGACA-TCTAGAGGTAAAATGATACTTTTTGGAAGAATCG
1 AGGTCAAAAATGGAATTTTTGGA-AGTTTGGGGGTAAAATGATA-TTTTTGGAAAAATCG
* * * * * * *
17926913 GGGTCAAAAATGGAATTTTTGGTAGTTCGGGGGTAAAATGGTTATTATTAGAAAAATTG
1 AGGTCAAAAATGGAATTTTTGGAAGTTTGGGGGTAAAAT-GATATTTTTGGAAAAATCG
* * * * * * *
17926972 AGGTTAAAAATAGAATTTTGGGAAATTTGGGGGTAAAATGGTAATTTTTAGAAAAAT-T
1 AGGTCAAAAATGGAATTTTTGGAAGTTTGGGGGTAAAATGAT-ATTTTTGGAAAAATCG
* **
17927030 AGGGT-TAAAATGGAATTTTTAAAAGTTTGGGGGTAAAATTGCA-ATTTTTGGAAAAATCG
1 A-GGTCAAAAATGGAATTTTTGGAAGTTTGGGGGTAAAA-TG-ATATTTTTGGAAAAATCG
* * * *
17927089 AGGTC-AAAATGAAATTTTTGGAAGTTTGAGGGTTAAAATG-TAATTTTTGTAAAATTCG
1 AGGTCAAAAATGGAATTTTTGGAAGTTTG-GGGGTAAAATGAT-ATTTTTGGAAAAATCG
*
17927147 ATGTCAAGAAA-GGAA-TTTTGGAAAGTTTGGGG
1 AGGTCAA-AAATGGAATTTTTGG-AAGTTTGGGG
17927179 ACCTTTTAGG
Statistics
Matches: 212, Mismatches: 40, Indels: 29
0.75 0.14 0.10
Matches are distributed among these distances:
58 96 0.45
59 110 0.52
60 6 0.03
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.33
Consensus pattern (58 bp):
AGGTCAAAAATGGAATTTTTGGAAGTTTGGGGGTAAAATGATATTTTTGGAAAAATCG
Found at i:17927018 original size:29 final size:28
Alignment explanation
Indices: 17926919--17927137 Score: 125
Period size: 29 Copynumber: 7.5 Consensus size: 28
17926909 ATCGGGGTCA
* * *
17926919 AAAATGGAATTTTTGGTAGTTCGGGGGT
1 AAAATGGAATTTTTGGAAATTTGGGGGT
* * * * * *
17926947 AAAATGGTTATTATTAGAAAAATTGAGGTT
1 AAAATGG-AATT-TTTGGAAATTTGGGGGT
* *
17926977 AAAAATAGAATTTTGGGAAATTTGGGGGT
1 -AAAATGGAATTTTTGGAAATTTGGGGGT
* * * *
17927006 AAAATGGTAATTTTTAGAAAAATTAGGGTT
1 AAAATGG-AATTTTT-GGAAATTTGGGGGT
*
17927036 AAAATGGAATTTTT-AAAAGTTTGGGGGT
1 AAAATGGAATTTTTGGAAA-TTTGGGGGT
* ** * *
17927064 AAAATTGCAATTTTTGGAAAAATCGAGGT
1 AAAA-TGGAATTTTTGGAAATTTGGGGGT
* * *
17927093 CAAAATGAAATTTTTGGAAGTTTGAGGGTT
1 -AAAATGGAATTTTTGGAAATTTG-GGGGT
*
17927123 AAAATGTAATTTTTG
1 AAAATGGAATTTTTG
17927138 TAAAATTCGA
Statistics
Matches: 142, Mismatches: 39, Indels: 19
0.71 0.19 0.09
Matches are distributed among these distances:
27 4 0.03
28 23 0.16
29 70 0.49
30 39 0.27
31 6 0.04
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.36
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAATTTGGGGGT
Found at i:17927048 original size:58 final size:58
Alignment explanation
Indices: 17926919--17927178 Score: 242
Period size: 58 Copynumber: 4.4 Consensus size: 58
17926909 ATCGGGGTCA
* * * * *
17926919 AAAATGGAATTTTTGGTAGTTCGGGGGTAAAATGGTTATTATTAGAAAAATTGAGGTT
1 AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGTAATTTTTAGAAAAATTGAGGTT
* *
17926977 AAAAATAGAATTTTGGGAAATTTGGGGGTAAAATGGTAATTTTTAGAAAAATT-AGGGTT
1 -AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGTAATTTTTAGAAAAATTGA-GGTT
* * * * * *
17927036 AAAATGGAATTTTT-AAAAGTTTGGGGGTAAAATTGCAATTTTTGGAAAAATCGAGGTC
1 AAAATGGAATTTTTGGAAA-TTTGGGGGTAAAATGGTAATTTTTAGAAAAATTGAGGTT
* * * * * *
17927094 AAAATGAAATTTTTGGAAGTTTGAGGGTTAAAAT-GTAATTTTT-GTAAAATTCGATGTC
1 AAAATGGAATTTTTGGAAATTTG-GGGGTAAAATGGTAATTTTTAGAAAAATT-GAGGTT
*
17927152 AAGAAAGGAA-TTTTGGAAAGTTTGGGG
1 AA-AATGGAATTTTTGGAAA-TTTGGGG
17927179 ACCTTTTAGG
Statistics
Matches: 167, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
57 9 0.05
58 88 0.53
59 70 0.42
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGGAATTTTTGGAAATTTGGGGGTAAAATGGTAATTTTTAGAAAAATTGAGGTT
Found at i:17929061 original size:282 final size:281
Alignment explanation
Indices: 17928140--17929298 Score: 1245
Period size: 282 Copynumber: 4.1 Consensus size: 281
17928130 TAAGCTAACA
* * * *
17928140 TAAGAGGCCAATTTCAAAGCTACGAGTATATAAAAA-ATGAGGGACCAAATCTGCACAAATAAAG
1 TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATA-GAGGGACCAAATCCGCACAAATAAAG
*
17928204 AAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCT-A-ACAC
65 AAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACAC
* *
17928267 -GCGATATTTTTAATATAAAAAATAATAAATTC-TTTTTATCCTCAAACTGCCATCTAACACGAT
130 GGCG-T-TTTTT-ATATAAAAAATAATAAATTCTTTTTTATCCTCAAACTGCCATCTAACGCG-G
* * *
17928330 CG-TTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTT
191 CGCTTT-TATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTT
* *
17928394 CATAAACTTTCTTTTTTTTCTTCTCAAAGT
255 CATCAA-TTT-TTTTTTTT-TTCTCAAACT
* * * * * *
17928424 TTAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCACACAAATTAACA
1 TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATAAAGA
* * ** * * **
17928489 AGTACAAGGACTATTCTTAAAATTTAAGCGAAAATAATATTTGTTTCTTTGGATTCTGACACGTG
66 AGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACACG
* * * ** * * ** * * * *
17928554 GCATTGTTGATAT-AAAAA-AATATTTTCTCTTGTATTTTGAAACTGCCATCTTACGCAGCGATT
131 GCGTTTTTTATATAAAAAATAATAAATTCTTTTTTATCCTCAAACTGCCATCTAACGCGGCGCTT
* * * * * *
17928617 TCA-AGTTAAATGCTTTTGACGGAGCTGCTTGTATTTGGCAAGGAGATTCTTCTTTGATTTCATC
196 TTATA--TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC
17928681 -----TTTTTTTTTTCTCAAACT
259 AATTTTTTTTTTTTTCTCAAACT
* * * * *
17928699 TAAGAGGCCAATTTCAATGCTACGTGTAAATAAAAATCGAGGGACC-AATCCTGCGCAAATCAAG
1 TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCC-GCACAAATAAAG
* * * *
17928763 AAGTACTAGGACTATTCTTAGAATTTAACCAAAAATAATATTTGTTTCACTCCACTCTGACACAC
65 AAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACAC
* * * *
17928828 GGCGTTTTTTATATAACAAATAATTAATTCTTTTTTATCCT-AAGACTGCTATCTTACGCGGCGC
130 GGCGTTTTTTATATAAAAAATAATAAATTCTTTTTTATCCTCAA-ACTGCCATCTAACGCGGCGC
* * *
17928892 TTTTATGATAATTGCATGTGATTGAGCTGCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCAT
194 TTTTAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCAT
* * *
17928957 CAATATTGTTTGTTTTCTCAAACT
258 CAATTTTTTTTTTTTTCTCAAACT
* * * * * * *
17928981 TAAGAGGCCAATTTGAATTCTACAAGTAAATAAAAATAAAGGGAGCAAATCCGCCCAAGTAAATA
1 TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATAAAGA
* * * * * *
17929046 AGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTCCACTCGACTCTAACACGCG
66 AGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACACG
** * * *
17929111 ATGTTTTTAATATAAAAAATAATAAAATCTTTTTTATCCTAAAACTGCCATCTAACGCGGC-CTT
131 GCGTTTTTTATATAAAAAATAATAAATTCTTTTTTATCCTCAAACTGCCATCTAACGCGGCGCTT
* * *
17929175 TTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAAAGAGATTCTTCATTGATTTCATC
196 TT--ATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC
*
17929240 AATTTTTTTTTTTTTCTCAAAGT
259 AATTTTTTTTTTTTTCTCAAACT
** * *
17929263 TAAGACCCCAATTTGAATTCTACAAGTAAATAAAAA
1 TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAA
17929299 AAGTGGGAAA
Statistics
Matches: 726, Mismatches: 126, Indels: 48
0.81 0.14 0.05
Matches are distributed among these distances:
274 5 0.01
275 122 0.17
276 14 0.02
277 84 0.12
279 1 0.00
281 6 0.01
282 287 0.40
283 88 0.12
284 109 0.15
285 5 0.01
286 3 0.00
287 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (281 bp):
TAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATAAAGA
AGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACACG
GCGTTTTTTATATAAAAAATAATAAATTCTTTTTTATCCTCAAACTGCCATCTAACGCGGCGCTT
TTATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAA
TTTTTTTTTTTTTCTCAAACT
Found at i:17929203 original size:559 final size:559
Alignment explanation
Indices: 17928140--17929298 Score: 1352
Period size: 559 Copynumber: 2.1 Consensus size: 559
17928130 TAAGCTAACA
* *
17928140 TAAGAGGCCAATTTCAAAGCTACGAGTATATAAAAAATGAGGGACCAAATCTGCACAAATAAAGA
1 TAAGAGGCCAATTTCAATGCTACGAGTAAAT-AAAAATGAGGGACCAAATCTGCACAAATAAAGA
* * *
17928205 AGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTAACACGCG
65 AGTACAAGGACTATTCTTAAAATTTAACCAAAAATAATATTTGTTTCACTCCACTCTAACACGCG
*
17928270 ATATTTTTAATATAAAAAATAATAAATTCTTTTTATCCTCAAACTGCCATCTAACACGATCGTTT
130 ATATTTTTAATATAAAAAATAATAAATTCTTTTTATCCTCAAACTGCCATCTAACACGAGCGTTT
* * *
17928335 CAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATAAA
195 CAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATAAA
* * * * * * **
17928400 CTTTCTTTTTTTTCTTCTCAAAGTTTAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTG
260 CTATCTGTTTGTTCTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAAAG
* * * *
17928465 GGACCAAATCCACACAAATTAACAAGTACAAGGACTATTCTTAAAATTTAAGCGAAAATAATATT
325 GGACCAAATCCACACAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCGAAAATAATATT
* ** * * * * * * *** ** *
17928530 TGTTTCTTTGGATTCTGACACGTGGCATTGTTGATATAAAAAAATATTTTCTCTTGTATTTTGAA
390 TGTTCCACTCGACTCTAACACGCGACATTGTTAATATAAAAAAATAAAATCTCTTGTATCCTAAA
* * * * *
17928595 ACTGCCATCTTACGCAGCGATTTCAAGTTAAATGCTTTTGACGGAGCTGCTTGTATTTGGCAAGG
455 ACTGCCATCTAACGCAGCCATTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAAAG
*
17928660 AGATTCTTCTTTGATTTCATC-TTTTTTTTTTCTCAAACT
520 AGATTCTTCATTGATTTCATCTTTTTTTTTTTCTCAAACT
* * *
17928699 TAAGAGGCCAATTTCAATGCTACGTGTAAATAAAAATCGAGGGACC-AATCCTGCGCAAATCAAG
1 TAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAT-GAGGGACCAAAT-CTGCACAAATAAAG
* *
17928763 AAGTACTAGGACTATTCTTAGAATTTAACCAAAAATAATATTTGTTTCACTCCACTCTGACACAC
64 AAGTACAAGGACTATTCTTAAAATTTAACCAAAAATAATATTTGTTTCACTCCACTCT-A-ACAC
* * * * *
17928828 GGCG-T-TTTTT-ATATAACAAATAATTAATTCTTTTTTATCCT-AAGACTGCTATCTTACGCG-
127 -GCGATATTTTTAATATAAAAAATAATAAATTC-TTTTTATCCTCAA-ACTGCCATCTAACACGA
* * *
17928888 GCGCTTT-TATGATAATTGCATGTGATTGAGCTGCTTGTATTTGGTAAGGAGATTCTTCGTCGAT
189 GCG-TTTCAAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGAT
* * *
17928952 TTCATCAA-TAT-TGTTTGTT-TTCTCAAACTTAAGAGGCCAATTTGAATTCTACAAGTAAATAA
252 TTCATAAACTATCTGTTTGTTCTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAA
* * * * * * *
17929014 AAATAAAGGGAGCAAATCCGCCCAAGTAAATAAGTAAAAGGACTATTCTTAGAATTAAACCTAAA
317 AAATAAAGGGACCAAATCCACACAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCGAAA
** * *
17929079 ATAATATTTGTTCCACTCGACTCTAACACGCGATGTTTTTAATATAAAAAATAATAAAATCTTTT
382 ATAATATTTGTTCCACTCGACTCTAACACGCGACATTGTTAATAT-AAAAA-AATAAAATCTCTT
* * * * * *
17929144 TTATCCTAAAACTGCCATCTAACGCGGCCTTTTCAA-TATAATTTCATGTGACTGAGCTGCTTGT
445 GTATCCTAAAACTGCCATCTAACGCAGCCATTTCAAGT-TAAATGCATGTGACGGAGCTGCTTGT
*
17929208 ATTTGGCAAAGAGATTCTTCATTGATTTCATCAATTTTTTTTTTTTTCTCAAAGT
509 ATTTGGCAAAGAGATTCTTCATTGATTTCATC----TTTTTTTTTTTCTCAAACT
** * * *
17929263 TAAGACCCCAATTTGAATTCTACAAGTAAATAAAAA
1 TAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAA
17929299 AAGTGGGAAA
Statistics
Matches: 501, Mismatches: 82, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
557 123 0.25
558 21 0.04
559 215 0.43
560 87 0.17
561 5 0.01
562 3 0.01
564 47 0.09
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (559 bp):
TAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAATGAGGGACCAAATCTGCACAAATAAAGAA
GTACAAGGACTATTCTTAAAATTTAACCAAAAATAATATTTGTTTCACTCCACTCTAACACGCGA
TATTTTTAATATAAAAAATAATAAATTCTTTTTATCCTCAAACTGCCATCTAACACGAGCGTTTC
AATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATAAAC
TATCTGTTTGTTCTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAAAGG
GACCAAATCCACACAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCGAAAATAATATTT
GTTCCACTCGACTCTAACACGCGACATTGTTAATATAAAAAAATAAAATCTCTTGTATCCTAAAA
CTGCCATCTAACGCAGCCATTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAAAGA
GATTCTTCATTGATTTCATCTTTTTTTTTTTCTCAAACT
Found at i:17929667 original size:511 final size:510
Alignment explanation
Indices: 17928904--17930862 Score: 1623
Period size: 511 Copynumber: 3.8 Consensus size: 510
17928894 TTATGATAAT
* *
17928904 TGCATGTGATTGAGCTGCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTG
1 TGCATGTGATTAAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTG
* * * *
17928969 TTTTCTCAAACTTAAGAGGCCAATTTGAATTCTACAAGTAAATAAAAATAAAGGGAGCAAATCCG
66 TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAATGGGACCAAATCCG
* * * * *
17929034 CCCAAGTAAATAAGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTCCACTCGA
131 CACAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCTAAAGTAATATTTGTTCCACTCGA
* * * *
17929099 CTCTAACACGCGATGTTTTTAATATAAAAAATAATAAAATCTTTTTTATCCTAAAACTGCCATCT
196 CTCTGACACGCGACGTTCTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCT
* * * * * *
17929164 AACGCGGCCTTTTCAA-TATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAAAGAGATTCTTC
261 AACGCGACCGTTTCAAGT-TAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGAGAGATTCTTC
* * * *
17929228 ATTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAA
325 TTTGATTTCATCAA-TTTTTTTTTTTTCTCAAACTTAAGACCCCAATTTCAATGCTACAAGTAAA
17929293 TAAAAAAAGTGGGAAAAATAATATTTGTTTCTTTGGACTCTGACACGTAGCGTTCTTGATATAAA
389 TAAAAAAAGTGGGAAAAATAATATTTGTTTCTTTGGACTCTGACACGTAGCGTTCTTGATATAAA
* *
17929358 AAAATATTTTCTCTTTTCTTTTAAAACTGCCATCTTACGCGGCAGTTTCAAGTTAAA
454 AAAATATTTTCTCTTTTCTTTTAAAACTGCCATCTTACACGACAGTTTCAAGTTAAA
* * * * *
17929415 TGCATGTGACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCACTT
1 TGCATGTGATTAAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATT---GT
* * * * * *
17929480 TTTTTTTCTCAAAGTTAAGACGCCAATTTGAGTGCTACGAGTAGATAAAAATAATGGGACCAGAT
63 TTGTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAATGGGACCAAAT
* ** * * * **
17929545 CTGCACAAACCAACAAGTACAAGGACTATTCTTAAAATTTAAA-TTAAAGTAATATTTGTTTCTT
128 CCGCACAAATAAACAAGTAAAAGGACTATTCTTAAAA-TTAAACCTAAAGTAATATTTGTTCCAC
* * * * * ** * *
17929609 TGGATTCTGACATGCGGCGTTCTTGATAT-AAAAA-AATATTTTCTCTTTTAT-TTAAAACTGCC
192 TCGACTCTGACACGCGACGTTCTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCC
* * * * * *
17929671 ATCTTACACGGCAGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTA
257 ATCTAACGCGACCGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGAGAGATTC
* * * * ** **
17929736 TTTTTTGATTTCATCTATTTTGTTCTTTTTCTCAAACTTCAGAGGCCAATTTCAATGCTACGTGT
322 TTCTTTGATTTCATCAATTTT-TTTTTTTTCTCAAACTTAAGACCCCAATTTCAATGCTACAAGT
* ** * ** * ** * ** ** * **
17929801 TAATAAAAATCGAGGGACCAAT--TCTGCGTAAATC-AAGAAGTACTAGGACTATTCTTAG-AAT
386 AAATAAAAAAAGTGGGAAAAATAATATTTGT--TTCTTTG--G-ACTCTGAC-A--CGTAGCGTT
* ** * * * * * * **
17929862 -TTAACCTAAAATAATATTTGCT-TTAGTTAAC-TTTGACACATGGCCTTTTTGATATAACAAAA
443 CTTGATATAAAAAAATATTTTCTCTT--TT--CTTTTAAAAC-T-GCC------ATCTTACACGA
* * **
17929924 AATTAATTCTTTTTGATATAACA
496 CAGT--TTC---AAG-T-TAA-A
* * * * * * * ** * *
17929947 CGACCGTTTCAATATAA-TTGCATGTGACTGAGCTGCTT-GTATTTGGTAAGGA-GATTCTTTGT
1 TG--CATGT-GAT-TAAGCTGC-T-TG--T-A--T--TTGGCA--AGG--A-GATTCTTC-GTC-
** *
17930009 CGATTTCATCAATATTGTTTGTTTTCTCAAACTTAAGACGATAATTTGAATTCTACAAGTAAATA
46 -GATTTCATCAATATTGTTTGTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATA
* * * * *
17930074 AAAATTAA-GGGAGCATATCCG-ACCAAATAAATAAGTAAAAGGACTATTCTGAGAATTAAACCT
110 AAAA-TAATGGGACCAAATCCGCA-CAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCT
* *
17930137 AGAA-TAATATTTGTTCCACTCGACTCTGACACGCGATGTTTTTAATATAAAAAATAATAAATTC
173 A-AAGTAATATTTGTTCCACTCGACTCTGACACGCGACGTTCTTAATATAAAAAATAATAAATTC
* * * ** *
17930201 TTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAA-TATAATTTCTTGTGATTGAGTTGC
237 TTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAAGT-TAAATGCATGTGACGGAGCTGC
* * * *
17930265 TTGTATTTGGCAGAGAGATTCTTCGTCGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACC
301 TTGTATTTGGCAGAGAGATTCTTCTTTGATTTCATCAATTTTTTTTTTTTCTCAAACTTAAGACC
* * * *
17930330 CCAATTTGAATTCTACAAGTAAATAAAAAAAGTGGGAAAAATAATATTTTTTTCTTTGGATTCTG
366 CCAATTTCAATGCTACAAGTAAATAAAAAAAGTGGGAAAAATAATATTTGTTTCTTTGGACTCTG
* *
17930395 ACACGTAGCGTTCTTGATATAAGAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACACGA
431 ACACGTAGCGTTCTTGATATAAAAAAATATTTTCTCTTTTCTTTTAAAACTGCCATCTTACACGA
*
17930460 CGGTTTCAAGTTAAA
496 CAGTTTCAAGTTAAA
* *
17930475 TGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC-A-A-T-TTT-
1 TGCATGTGATTAAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTG
* * * **
17930535 TTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAATTTGTGGGACCAAATCCG
66 TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAATGGGACCAAATCCG
* * * ** *
17930600 CACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAA-CTAAAGTAATATTTGTTTCTTTGG
131 CACAAATAAACAAGTAAAAGGACTATTCTTAAAA-TTAAACCTAAAGTAATATTTGTTCCACTCG
* * * * ** * ** *
17930664 ATTCTGACACACGACATTCTTGATAT-AAAAA-AATATTTTCTGTTTTATTTTAAAACTGCTATC
195 ACTCTGACACGCGACGTTCTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATC
* * *
17930727 TTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTC
260 TAACGCGACCGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGAGAGATTCTTC
* ** * ** **
17930792 TTTGATTTCATCTATTTTGATTTTTTCTCAAACATAAGAGGCCAATTTCAATGCTATGAGTAAAT
325 TTTGATTTCATCAATTTTTTTTTTTTCTCAAACTTAAGACCCCAATTTCAATGCTACAAGTAAAT
17930857 AAAAAA
390 AAAAAA
17930863 TGAGGGACCA
Statistics
Matches: 1097, Mismatches: 273, Indels: 164
0.72 0.18 0.11
Matches are distributed among these distances:
503 138 0.13
504 9 0.01
505 117 0.11
506 9 0.01
507 1 0.00
508 1 0.00
509 5 0.00
510 14 0.01
511 183 0.17
512 18 0.02
513 17 0.02
514 140 0.13
515 10 0.01
516 12 0.01
517 4 0.00
518 4 0.00
520 1 0.00
521 1 0.00
523 2 0.00
524 10 0.01
525 5 0.00
526 6 0.01
528 2 0.00
529 4 0.00
530 2 0.00
531 4 0.00
532 2 0.00
534 6 0.01
535 4 0.00
536 12 0.01
537 2 0.00
539 1 0.00
540 1 0.00
542 4 0.00
543 3 0.00
544 12 0.01
545 5 0.00
546 23 0.02
547 127 0.12
548 14 0.01
549 66 0.06
550 93 0.08
551 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (510 bp):
TGCATGTGATTAAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTG
TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACAAGTAAATAAAAATAATGGGACCAAATCCG
CACAAATAAACAAGTAAAAGGACTATTCTTAAAATTAAACCTAAAGTAATATTTGTTCCACTCGA
CTCTGACACGCGACGTTCTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCT
AACGCGACCGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGAGAGATTCTTCT
TTGATTTCATCAATTTTTTTTTTTTCTCAAACTTAAGACCCCAATTTCAATGCTACAAGTAAATA
AAAAAAGTGGGAAAAATAATATTTGTTTCTTTGGACTCTGACACGTAGCGTTCTTGATATAAAAA
AATATTTTCTCTTTTCTTTTAAAACTGCCATCTTACACGACAGTTTCAAGTTAAA
Found at i:17930973 original size:279 final size:279
Alignment explanation
Indices: 17930408--17931707 Score: 1388
Period size: 281 Copynumber: 4.6 Consensus size: 279
17930398 CGTAGCGTTC
* *
17930408 TTGATATAAGAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTA
1 TTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTA
* * *
17930473 AATGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAA---T-TT
66 AATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCAATTTTGTT
** * ** * **
17930534 TTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAATTTGTGGGACCAAATCC
131 TTTTTCTCAAACATAAGACGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATTT
* * * ** *
17930599 GCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAACTAAAGTAATATTTGTTTCTTTGG
196 GCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCG
* *
17930664 ATTCTGACACACGACATTC
261 ACTCTGACACACGACATTT
* *
17930683 TTGATATAAAAAAATATTTTCTGTTTTATTTTAAAACTGCTATCTTACGCGACGGTTTCAAGTTA
1 TTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTA
* * *
17930748 AATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGAT
66 AATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCAATTTTGTT
* *
17930813 TTTTTCTCAAACATAAGAGGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTT
131 TTTTTCTCAAACATAAGACGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATTT
* * *
17930878 GCGCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACACA
196 GCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCG
* ** *
17930943 ACTCTAACATGCGATATTT
261 ACTCTGACACACGACATTT
* * ** * ** * * *
17930962 TTAAAATAAAAAATAATAAATTCTTTTTTATCCTAAATCTGCCATCTAACGCGACCGTTTCAA-T
1 TTGATAT-AAAAA-AATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGT
* * *
17931026 ATAATTTCATGTGACTGAGCTGCTTGT-TTTAGGCAGGGAGATTCTTCGTTGATTTCATCAACTT
64 -TAAATGCATGTGACTGAGCTGCTTGTATTT-GGCAGGGAGATTCTTCTTTGATTTCATCAA-TT
* * * * * * *
17931090 TCTTTTTTTTTTTCACAA-AGTTTAGACGCCAATTTGAATGCTACGAGTCAATAAAATA-GTGGG
126 T-TGTTTTTTTCTCA-AACA--TAAGACGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGG
* *
17931153 ACCAAA--TCCAGACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATTATATT
187 ACCAAATTTGC-G-CAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATT
** * * * * * *
17931216 TGTTTCTTTGGATTTTGACACGCGACGTTG
250 TGTTTCACTCGACTCTGACACACGACATTT
** * *
17931246 TTGATATATGAAAATATTTCCTCTTTTATTTTGAAACTGCCATCTTACGC-AGCGGTTTCAAGTT
1 TTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGTT
* * * *
17931310 AAATGCTTGTGACGGAGCTTCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGT
65 AAATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCAATTTTGT
* * *
17931375 TTTTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGTGTAAAT-AAAAATCGAGGGACC-AAT
130 TTTTTTCTCAAACATAAGACGCCAATTTCAATGCTACGAGTAAATAAAAAAT-GAGGGACCAAAT
* * * * *
17931438 TCTGCGCAAATCAAGAAGTACTAGCATTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCAC
194 T-TGCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCAC
* * *
17931503 TCGACTCTGACAAACGGCGTTT
258 TCGACTCTGACACACGACATTT
* * * * * * * * *
17931525 TTGATATAACAAATAAT-TAATTCTATTTTATCTTAAGACCGCTATCTTACGCGACGCTTTTATG
1 TTGATATAA-AAA-AATAT-TTTCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAG
* * * *
17931589 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAAGGAGATTCTT-TGTTGATTTCATCAATTT
63 TTAAATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCT-TTGATTTCATCAATTT
* ** * * * *
17931653 TCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATTAAAAAA
127 TGTTTTTTTCTCAAACATAAGACGCCAATTTCAATGCTACGAGTAAA-TAAAAAA
17931708 GTGGGAAACA
Statistics
Matches: 842, Mismatches: 152, Indels: 54
0.80 0.15 0.05
Matches are distributed among these distances:
275 114 0.14
277 4 0.00
278 29 0.03
279 213 0.25
280 25 0.03
281 225 0.27
282 93 0.11
283 24 0.03
284 84 0.10
285 31 0.04
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (279 bp):
TTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTA
AATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCAATTTTGTT
TTTTTCTCAAACATAAGACGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATTT
GCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCG
ACTCTGACACACGACATTT
Found at i:17931094 original size:784 final size:776
Alignment explanation
Indices: 17929594--17931153 Score: 1931
Period size: 784 Copynumber: 2.0 Consensus size: 776
17929584 TAAATTAAAG
* *
17929594 TAATATTTGTTTCTTTGGATTCTGACATGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTTA
1 TAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTTTA
*
17929659 TTTAAAACTGCCATCTTACACGGCAGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTG
66 TTTAAAACTGCCATCTTACACGACAGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTG
* ** * * *
17929724 GCAGGGAGATTATTTTTTGATTTCATCTATTTTGTTCTTTTTCTCAAACTTCAGAGGCCAATTTC
131 GCAAGGAGATTATTCGTTGATTTCATCTA-TATGTTCTTTTTCTCAAACTTAAGACGCCAATTTC
* * * * ** * *
17929789 AATGCTACGTGTTAATAAAAATCGAGGGACCAATTCTGCGTAAATCAAGAAGTACTAGGACTATT
195 AATGCTACGAGTAAATAAAAATCGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATT
* * * * * *
17929854 CTTAGAATTTAACCTAAAATAATATTTGCTTTAGTTAACTTTGACACATGGCCTTTTTGATATAA
260 CTTAAAATTTAAACTAAAATAATATTTGCTTTAGTTAACTTTGACACACGACATTCTTGATATAA
* * *
17929919 CAAAAAATTAATTCTTTTTGATATAACACGACCGTTTCAATATAATTGCATGTGACTGAGCTGCT
325 CAAAAAATTAATTATTTTTGATATAACACGACCGTTTCAATATAAATGCATGTGACGGAGCTGCT
* * *
17929984 TGTATTTGGTAAGGAGATTCTTTGTCGATTTCATCAATATTGTTTGTTTTCTCAAACTTAAGACG
390 TGTATTTGGCAAGGAGATTCTTTGTCGATTTCATCAATATTGATTGTTTTCTCAAACATAAGACG
* * * * * * *
17930049 ATAATTTGAATTCTACAAGTAAATAAAAATTAAGGGAGCATATCCGACCAAATAAATAAGTAAAA
455 ACAATTTCAATGCTACAAGTAAATAAAAAATAAGGGACCAAATCCGACCAAATAAAGAAGTAAAA
* * * * * *
17930114 GGACTATTCTGAGAATTAAACCTAGAATAATATTTGTTCCACTCGACTCTGACACGCGATGTTTT
520 GGACTATTCTGAAAATTAAACCTAAAATAATATTTGTTCCACACAACTCTAACACGCGATATTTT
*
17930179 TAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAATAT
585 TAAAATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAATAT
* * * *
17930244 AATTTCTTGTGATTGAGTTGCTTGTATTTGGCAGAGAGATTCTTCGTCGATTTCATCAATTTTC-
650 AATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTCGATTTCATCAACTTTCT
* *
17930308 TTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAAAAAAAGTGGGAAAAA
715 TTTTTTTCACAAAGTTAAGACCCCAATTTGAATGCTACAAGTAAAT-AAAAAAGTGGGAAAAA
* * *
17930371 TAATATTTTTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAGAAAATATTTTCTCTTTTA
1 TAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTTTA
* **
17930436 TTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGTATTT
66 -TTTAAAACTGCCATCTTACACGACAGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTT
* * *
17930501 GGCAAGGAGATTCTTCGTTGATTTCATC-A-AT-TT-TTTTTCTCAAAGTTAAGACGCCAATTTG
130 GGCAAGGAGATTATTCGTTGATTTCATCTATATGTTCTTTTTCTCAAACTTAAGACGCCAATTTC
* * *
17930562 AATGCTACGAGTAAATAAAATTTGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATT
195 AATGCTACGAGTAAATAAAAATCGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATT
* ** *
17930627 CTTAAAATTTAAACTAAAGTAATATTTG-TTTCTTTGGA-TTCTGACACACGACATTCTTGATAT
260 CTTAAAATTTAAACTAAAATAATATTTGCTTTAGTT-AACTT-TGACACACGACATTCTTGATAT
** * * * *
17930690 AA-AAAAATATTTTCTGTTTTATTTTAAAACTGCTATCTTACGCGACGGTTTCAAGT-TAAATGC
323 AACAAAAA-A---T-T-AATTATTTT-----TG--ATATAACACGACCGTTTCAA-TATAAATGC
* * * *
17930753 ATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCT-TTGATTTCATCTATTTTGATT-TT
374 ATGTGACGGAGCTGCTTGTATTTGGCAAGGAGATTCTT-TGTCGATTTCATCAATATTGATTGTT
* * ** * **
17930816 TTCTCAAACATAAGAGGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTG-C
438 TTCTCAAACATAAGACGACAATTTCAATGCTACAAGTAAATAAAAAATAAGGGACCAAATCCGAC
* * * * * *
17930880 GCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACACAAC
503 -CAAATAAAGAAGTAAAAGGACTATTCTGAAAATTAAACCTAAAATAATATTTGTTCCACACAAC
* *
17930945 TCTAACATGCGATATTTTTAAAATAAAAAATAATAAATTCTTTTTTATCCTAAATCTGCCATCTA
567 TCTAACACGCGATATTTTTAAAATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTA
*
17931010 ACGCGACCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGT-TTTAGGCAGGGAGATTCTTCG
632 ACGCGACCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTT-GGCAGAGAGATTCTTCG
* * * * *
17931074 TTGATTTCATCAACTTTCTTTTTTTTTTTCACAAAGTTTAGACGCCAATTTGAATGCTACGAGTC
696 TCGATTTCATCAACTTTC---TTTTTTTTCACAAAGTTAAGACCCCAATTTGAATGCTACAAGTA
*
17931139 AATAAAATAGTGGGA
758 AATAAAAAAGTGGGA
17931154 CCAAATCCAG
Statistics
Matches: 662, Mismatches: 97, Indels: 38
0.83 0.12 0.05
Matches are distributed among these distances:
772 12 0.02
773 125 0.19
774 2 0.00
775 1 0.00
776 1 0.00
777 62 0.09
778 90 0.14
783 6 0.01
784 236 0.36
785 74 0.11
786 2 0.00
787 11 0.02
788 40 0.06
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (776 bp):
TAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTTTA
TTTAAAACTGCCATCTTACACGACAGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATTTG
GCAAGGAGATTATTCGTTGATTTCATCTATATGTTCTTTTTCTCAAACTTAAGACGCCAATTTCA
ATGCTACGAGTAAATAAAAATCGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
TTAAAATTTAAACTAAAATAATATTTGCTTTAGTTAACTTTGACACACGACATTCTTGATATAAC
AAAAAATTAATTATTTTTGATATAACACGACCGTTTCAATATAAATGCATGTGACGGAGCTGCTT
GTATTTGGCAAGGAGATTCTTTGTCGATTTCATCAATATTGATTGTTTTCTCAAACATAAGACGA
CAATTTCAATGCTACAAGTAAATAAAAAATAAGGGACCAAATCCGACCAAATAAAGAAGTAAAAG
GACTATTCTGAAAATTAAACCTAAAATAATATTTGTTCCACACAACTCTAACACGCGATATTTTT
AAAATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAATATA
ATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTCGATTTCATCAACTTTCTT
TTTTTTCACAAAGTTAAGACCCCAATTTGAATGCTACAAGTAAATAAAAAAGTGGGAAAAA
Found at i:17931602 original size:563 final size:559
Alignment explanation
Indices: 17930446--17931713 Score: 1779
Period size: 563 Copynumber: 2.3 Consensus size: 559
17930436 TTTTAAAACT
* * * * *
17930446 GCCATCTTACACGACGGTTTCAAGT-TAAATGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAG
1 GCCATCTAACGCGACCGTTTCAA-TATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAG
17930510 ATTCTTCGTTGATTTCATCAA----TTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACG
65 ATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACG
*
17930571 AGTAAATAAAATTTGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATT
130 AGTAAATAAAA-TAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATT
*
17930636 TAAACTAAAGTAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATATT
194 TAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATATT
* * *
17930701 TTCTGTTTTATTTTAAAACTGCTATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCT
259 TCCTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCT
17930766 GCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTCTCAAACATAAGA
324 GCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTCTCAAACATAAGA
*
17930831 GGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTAC
389 GGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTAC
* * ** *
17930896 AAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACACAACTCTAACATGCGATATT
454 AAGCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAACGACATT
* *
17930961 TTTAAAATAAAAAATAATAAATTCTTTTTTATCCTAAATCT
519 TTTAAAATAAAAAATAATAAATTCTATTTTATCCTAAATCC
* *
17931002 GCCATCTAACGCGACCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGT-TTTAGGCAGGGAG
1 GCCATCTAACGCGACCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTT-GGCAAGGAG
* *
17931066 ATTCTTCGTTGATTTCATCAACTTTCTTTTTTTTTTTCACAAAGTTTAGACGCCAATTTGAATGC
65 ATTCTTCGTTGATTTCATCAA---T-TTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGC
*
17931131 TACGAGTCAATAAAATAGTGGGACCAAATCCAG-ACAAATCAACAAGTACAAGGACTATTCTTAA
126 TACGAGTAAATAAAATAGTGGGACCAAATCC-GCACAAATCAACAAGTACAAGGACTATTCTTAA
* * * * * * **
17931195 AATTTAAGCTAAAATTATATTTGTTTCTTTGGATTTTGACACGCGACGTTGTTGATATATGAAAA
190 AATTTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAA
* *
17931260 TATTTCCTCTTTTATTTTGAAACTGCCATCTTACGC-AGCGGTTTCAAGTTAAATGCTTGTGACG
255 TATTTCCTCTTTTATTTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGACG
* * *
17931324 GAGCTTCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAACT
319 GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTCTCAAACA
*
17931389 TAAGAGGCCAATTTCAATGCTACGTGTAAAT-AAAAATCGAGGGACC-AATTCTGCGCAAATCAA
384 TAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAAT-GAGGGACCAAATT-TGCGCAAATCAA
* * * * *
17931452 GAAGTACTAGCATTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACAAA
447 GAAGTACAAGCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAA
* * * * * * *
17931517 CGGCGTTTTTGATATAACAAATAATTAATTCTATTTTATCTTAAGA-CC
512 CGACATTTTTAAAATAAAAAATAATAAATTCTATTTTATCCTAA-ATCC
* * * *
17931565 GCTATCTTACGCGA-CGCTTT-TATGATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAAGGA
1 GCCATCTAACGCGACCG-TTTCAAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGA
* * * *
17931628 GATTCTTTGTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTAC
64 GATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTAC
* *
17931693 AAGTAAATTAAAAAAGTGGGA
129 GAGTAAA-TAAAATAGTGGGA
17931714 AACATAATAT
Statistics
Matches: 629, Mismatches: 64, Indels: 34
0.87 0.09 0.05
Matches are distributed among these distances:
555 4 0.01
556 72 0.11
559 42 0.07
560 13 0.02
562 15 0.02
563 430 0.68
564 53 0.08
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (559 bp):
GCCATCTAACGCGACCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGA
TTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGA
GTAAATAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTA
AACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATATTTC
CTCTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCTGC
TTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTCTCAAACATAAGAGG
CCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTACAA
GCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAACGACATTTT
TAAAATAAAAAATAATAAATTCTATTTTATCCTAAATCC
Found at i:17931631 original size:281 final size:278
Alignment explanation
Indices: 17930426--17931706 Score: 1334
Period size: 279 Copynumber: 4.6 Consensus size: 278
17930416 AGAAAATATT
* * * * * *
17930426 TTCTCTTTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGCT
1 TTCTATTTTATCTT-AAACTGCCATCTTACGCGACGCTTTCAAGATAAATGCATGTGACTGAGCT
* * *
17930491 GCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC-A--AT-TTTTTTTCTCAAAGTTAAGA
65 GCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAAGTTAAGA
* * * *
17930552 CGCCAATTTGAATGCTACGAGTAAATAAAATTTGTGGGACCAAATCCGCACAAATCAACAAGTAC
130 CGCCAATTTGAATGCTACGAGTAAATAAAA-ATGAGGGACCAAATCTGCGCAAATCAACAAGTAC
* * ** * *
17930617 AAGGACTATTCTTAAAATTTAAACTAAAGTAATATTTGTTTCTTTGGATTCTGACACACGACATT
194 AAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACACGACATT
* *
17930682 CTTGATATAAAAA-AA-TATT
259 TTTGATATAAAAATAATTA-A
* * * * * *
17930701 TTCTGTTTTATTTTAAAACTGCTATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCT
1 TTCTATTTTATCTT-AAACTGCCATCTTACGCGACGCTTTCAAGATAAATGCATGTGACTGAGCT
* **
17930766 GCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTCTCAAACATAAGA
65 GCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAAGTTAAGA
* * * * *
17930831 GGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTAC
130 CGCCAATTTGAATGCTACGAGTAAAT-AAAAATGAGGGACCAAATCTGCGCAAATCAACAAGTAC
* * * ** *
17930896 AAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACACAACTCTAACATGCGATATT
194 AAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACACGACATT
* * *
17930961 TTTAAAATAAAAAATAATAAA
259 TTTGATAT-AAAAATAATTAA
* * * * * *
17930982 TTCTTTTTTATCCTAAATCTGCCATCTAACGCGAC-CGTTTCAATATAATTTCATGTGACTGAGC
1 TTCTATTTTATCTTAAA-CTGCCATCTTACGCGACGC-TTTCAAGATAAATGCATGTGACTGAGC
* * * *
17931046 TGCTTGT-TTTAGGCAGGGAGATTCTTCGTTGATTTCATCAACTTTCTTTTTTTTTTTCACAAAG
64 TGCTTGTATTT-GGCAGGGAGATTCTTCTTTGATTTCAT---CTAT-TTTGTTTTTTTCTCAAAG
* * *
17931110 TTTAGACGCCAATTTGAATGCTACGAGTCAAT-AAAATAGTGGGACCAAATC--CAGACAAATCA
124 TTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAAT-GAGGGACCAAATCTGC-G-CAAATCA
* ** * * *
17931172 ACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATTATATTTGTTTCTTTGGATTTTGACAC
186 ACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACAC
* * *
17931237 GCGACGTTGTTGATATATGAAAAT-ATT--
251 ACGACATTTTTGATATA--AAAATAATTAA
* * * * * * *
17931264 TCCTCTTTTATTTTGAAACTGCCATCTTACGC-AGCGGTTTCAAGTTAAATGCTTGTGACGGAGC
1 TTCTATTTTATCTT-AAACTGCCATCTTACGCGA-CGCTTTCAAGATAAATGCATGTGACTGAGC
* *
17931328 TTCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAACTTAAG
64 TGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAAGTTAAG
* * * * *
17931393 AGGCCAATTTCAATGCTACGTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATCAAGAAGTA
129 ACGCCAATTTGAATGCTACGAGTAAATAAAAAT-GAGGGACCAAATCTGCGCAAATCAACAAGTA
* * * * * * *
17931458 CTAGCATTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACAAACGGCGT
193 CAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACACGACAT
17931523 TTTTGATATAACAAATAATTAA
258 TTTTGATATAA-AAATAATTAA
* * * * *
17931545 TTCTATTTTATCTTAAGACCGCTATCTTACGCGACGCTTTTATGATAATTGCATGTGACTGAGCT
1 TTCTATTTTATCTTAA-ACTGCCATCTTACGCGACGCTTTCAAGATAAATGCATGTGACTGAGCT
* * * *
17931610 GCTTGTATTTGGTAAGGAGATTCTT-TGTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAG
65 GCTTGTATTTGGCAGGGAGATTCTTCT-TTGATTTCATCTATTTTGTTTTTTTCTCAAAGTTAAG
* * *
17931674 ACCCCAATTTGAATTCTACAAGTAAATTAAAAA
129 ACGCCAATTTGAATGCTACGAGTAAA-TAAAAA
17931707 AGTGGGAAAC
Statistics
Matches: 827, Mismatches: 144, Indels: 63
0.80 0.14 0.06
Matches are distributed among these distances:
275 96 0.12
276 1 0.00
277 1 0.00
278 47 0.06
279 222 0.27
280 19 0.02
281 209 0.25
282 86 0.10
283 13 0.02
284 88 0.11
285 45 0.05
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (278 bp):
TTCTATTTTATCTTAAACTGCCATCTTACGCGACGCTTTCAAGATAAATGCATGTGACTGAGCTG
CTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAAGTTAAGAC
GCCAATTTGAATGCTACGAGTAAATAAAAATGAGGGACCAAATCTGCGCAAATCAACAAGTACAA
GGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACACGACATTTT
TGATATAAAAATAATTAA
Found at i:17932223 original size:279 final size:280
Alignment explanation
Indices: 17931717--17933017 Score: 1338
Period size: 279 Copynumber: 4.7 Consensus size: 280
17931707 AGTGGGAAAC
* * * * *
17931717 ATAATATTTGTTTCTTTAGATTCTGGCATGCAGCGTTCTTGATATAAGAAAATATTTTCTCTTTT
1 ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
* ** * * *
17931782 ATTTTAAAACAGCCATCTTA--C-GCAATTTCAAGTTAAATGCAAGTGATTGAGCTACTTGTATT
66 ATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTATT
* ** * *
17931844 TGGCAGGGAGATTCTTCGCCGATTTCATCAATTTTCTTTTTTTCTTCTCAAAGTTAAGACGCCAA
131 TGGCAAGGAGATTCTTCGTTGATTTCATCAA-TTT-TGTTTTT-TTCTCAAACTTAAGACGCCAA
* * * *
17931909 TTTGAATGCTATGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAAAGAA-TACAAGAA
193 TTTCAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAAAGAAGTACAAGGA
*
17931973 CTATTCTTAAAATTTAAACTAAA
258 CTATTCTTAAAATTTAAGCTAAA
* *
17931996 GTAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
1 ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
*
17932061 ATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGTATT
66 ATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTATT
* * * * *
17932126 TGGCAAGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTTAAACATAAGAGGCCAATTT
131 TGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGACGCCAATTT
* * * *
17932191 CAAAGCTACGAGTATATAAAAA-ATGAGGGACCAAATCTGCGCAAAT-AAAGAAGTACAAGGACT
196 CAATGCTACGAGTAAATAAAAATA-GAGGGACCAAATCCGCACAAATCAAAGAAGTACAAGGACT
*
17932254 ATTCTTAAAATTGAAGCTAAA
260 ATTCTTAAAATTTAAGCTAAA
** * * *** * * * **
17932275 ATAATATTTGTTTCACTCGACTCTAACACGCGATATTTTTAATATAAAACTAATAAATTCT-TTT
1 ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAAAA-AAATATTTTCTCTTT
* * * * * * * * * * *
17932339 CT-TTCCTAAATCTCCCATCTAACACGACCGTTTCAA-TATAATTTCATATGGCTGAGCTGCTTG
65 -TATT-TTAAAACTGCCATCTTACGCGGCGGTTTCAAGT-TAAATGCATGTGACTGAGCTGCTTG
* * * * ** *
17932402 TATTAGGC-AGTGAGATTATTCCTTGATTTCATCAACATTCTTTTTTTTTTCTCAATGTTTAGAC
127 TATTTGGCAAG-GAGATTCTTCGTTGATTTCATC-A-ATT-TTGTTTTTTTCTCAAACTTAAGAC
* * * * * *
17932466 GCCAATTTGAATGCTACGAGTAAATAAAAATGGTGGGACCAAATCCACAGAAATC-AACAAGTAC
188 GCCAATTTCAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAAAGAAGTAC
17932530 AAGGACTATTCTTAAAATTTAAGCTAAA
253 AAGGACTATTCTTAAAATTTAAGCTAAA
* *
17932558 ATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTGTTGATATAAAAAAATATTTTCTCTTTT
1 ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
* * * * *
17932623 ATTTTGAAACTGCCATCTTACGCAGCGGTTTCAAGTTAAATGCTTTTGACGGAGCTGCTTGTATT
66 ATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTATT
* * *
17932688 TGGCAAGGAGATTCTTCTTTGATTTCATC---TAT-TTTTTTTCTCAAACTTAAGAGGCCAATTT
131 TGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGACGCCAATTT
* * * * * *
17932749 CAATGCTACGTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATC-AAGAAGTACTAGGACTA
196 CAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAAAGAAGTACAAGGACTA
* * *
17932813 TTCTTAGAATTTAACCCAAA
261 TTCTTAAAATTTAAGCTAAA
** * * * * * ** *
17932833 ATAATATTTGTTTCACTCCACTCTGACACACGGCGTTTTTTATATAACAAATAATAAATTCTTTT
1 ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAA-AAA-AATATTTTCTCTT
** * * * * * * * * *
17932898 TTATCCTAAGACTGCTATCTTACGCGGTGCTTTTATGATAATTGCATGTGATTGAGCTGCTTGTA
64 TTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTA
* * *
17932963 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAACTT
129 TTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTT-TTTTCTCAAACTT
17933018 TGGTAAGGAG
Statistics
Matches: 833, Mismatches: 163, Indels: 49
0.80 0.16 0.05
Matches are distributed among these distances:
275 134 0.16
276 4 0.00
277 88 0.11
278 7 0.01
279 209 0.25
280 87 0.10
281 7 0.01
282 154 0.18
283 143 0.17
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (280 bp):
ATAATATTTGTTTCTTTCGATTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
ATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTATT
TGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGACGCCAATTT
CAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAAAGAAGTACAAGGACTA
TTCTTAAAATTTAAGCTAAA
Found at i:17933043 original size:53 final size:53
Alignment explanation
Indices: 17932963--17933070 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
17932953 GCTGCTTGTA
17932963 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAAC
1 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAAC
17933016 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAAC
1 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAAC
17933069 TT
1 TT
17933071 AAGAGGCCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (53 bp):
TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAAC
Found at i:17933346 original size:335 final size:330
Alignment explanation
Indices: 17932686--17933349 Score: 879
Period size: 335 Copynumber: 2.0 Consensus size: 330
17932676 GCTGCTTGTA
* *
17932686 TTTGGCAAGGAGATTCTTCTTTGATTTCATCTATTTTTTTTCTCAAACTTAAGAGGCCAATTTCA
1 TTTGGCAAGGAGATTCTTCGTCGATTTCATCTATTTTTTTTCTCAAACTTAAGAGGCCAATTTCA
** ** * * * **
17932751 ATGCTACGTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATCAAGAAGTACTAGGACTATTC
66 ATGCTACAAGTAAATAAAAATAAAGGGACAAATTCTGCCCAAATAAAGAAGTAAAAGGACTATTC
* * * * *
17932816 TTAGAATTTAACCCAAAATAATATTTGTTTCACTCCACTCTGACACACGGCGTTTTTTATATAAC
131 TTAGAATTTAACCCAAAATAATATTTGTTCCACTCCACTCTAACACACGACGTTTTTAATATAAA
* * * *
17932881 AAATAATAAATTCTTTTTTATCCTAAGACTGCTATCTTACGCGGTGCTTTTATGATAATTGCATG
196 AAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGGTCCTTTTATGATAATTGCATG
* * *
17932946 TGATTGAGCTGCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCT
261 TGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATTCTTTGTTTTCT
17933011 CAAAC
326 CAAAC
*
17933016 TTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAACTTAAGAGGCCAA
1 TTTGGCAAGGAGATTCTTCGTCGATTTCATC--TA-T-TTT-TTTTCTCAAACTTAAGAGGCCAA
* * * *
17933081 TTTGAATTCTACAAGTAAATAAAAATAAAGGGAGCAAATTC-GCCCAAGTAAATAAGTAAAAGGA
61 TTTCAATGCTACAAGTAAATAAAAATAAAGGGA-CAAATTCTGCCCAAATAAAGAAGTAAAAGGA
* * * *
17933145 CTATTCTTAG-ATTTAAACCTAAAATAATATTTGTTCCACTCGACTCTAACACGCGATGTTTTTA
125 CTATTCTTAGAATTT-AACCCAAAATAATATTTGTTCCACTCCACTCTAACACACGACGTTTTTA
17933209 ATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGG-CCTTTTCAAT-AT
189 ATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGGTCCTTTT--ATGAT
* * *
17933272 AATTTCATGTGACTGAGCTGCTTGTATTTGGC-AGAGAGATTCTTCGTTGATTTCATCAATTTTC
252 AATTGCATGTGACTGAGCTGCTTGTATTTGGCAAG-GAGATTCTTCGTCGATTTCATCAATATTC
*
17933336 TTTTTTTTCTCAAA
316 TTTGTTTTCTCAAA
17933350 GTTAAGACCC
Statistics
Matches: 288, Mismatches: 36, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
330 28 0.10
332 2 0.01
333 1 0.00
334 14 0.05
335 235 0.82
336 8 0.03
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (330 bp):
TTTGGCAAGGAGATTCTTCGTCGATTTCATCTATTTTTTTTCTCAAACTTAAGAGGCCAATTTCA
ATGCTACAAGTAAATAAAAATAAAGGGACAAATTCTGCCCAAATAAAGAAGTAAAAGGACTATTC
TTAGAATTTAACCCAAAATAATATTTGTTCCACTCCACTCTAACACACGACGTTTTTAATATAAA
AAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGGTCCTTTTATGATAATTGCATG
TGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTCGATTTCATCAATATTCTTTGTTTTCT
CAAAC
Found at i:17934004 original size:279 final size:274
Alignment explanation
Indices: 17933437--17934446 Score: 931
Period size: 268 Copynumber: 3.6 Consensus size: 274
17933427 TGTAGCGTTC
* * *
17933437 TTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCAGTTTCAAGT-T
1 TTGATATAAAAAAATATTTTCTCTTTTA-TTTAAAACTGCCATCTAACACGACAGTTTCAA-TAT
* * *
17933501 AAATGCATGTGACTAAGCTTCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCT
64 AAATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTCGATTTCATCAA-TTT-T
* * *
17933566 TTTTTTTTCTCAAAGTTAAGACGCCAATTTGAGTGCTACGAG-TAGATAAAAATAATGGGACCAG
127 GTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTTA-ATAAAAATAA-GGGACCA-
* * ** *
17933630 ATCCGCACAAACCAACAAGTACAAGGACTATTCTTAAAATTTAAATTAAAGTAATATTTGTTTC-
189 ATCCGCACAAATCAACAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTG-TTCA
* ** * *
17933694 TTTGGATTCTGACACGCGGCGTTC
253 CTTAAATT-TGACACGCAGC-TTT
* *
17933718 TTGATATAAAAAAATATTTTCTCTTTTATTTAAAACTGGCATCTTACACGACAGTTTCAAGT-TA
1 TTGATATAAAAAAATATTTTCTCTTTTATTTAAAACTGCCATCTAACACGACAGTTTCAA-TATA
* ** * *
17933782 AATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTTTTTGATTTCATCTATTTTGTT
65 AATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTCGATTTCATCAATTTTGTT
* * * *
17933847 CTTTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGTGTTAATAAAAATCGAGGGACCAATTC
130 -TTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTTAATAAAAAT-AAGGGACCAA-TC
* ** * * *
17933912 TGCGTAAATCAAGAAGTACTAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGCTTCAGTT
192 CGCACAAATCAACAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTG-TTCACTT
*
17933977 AAATTTGACACACAGCCTTT
256 AAATTTGACACGCAG-CTTT
* * *
17933997 TTGATATAACAAAAA-ATTAAT-TC---T-TTT-----TG--ATATAACACGACCGTTTCAATAT
1 TTGATATAA-AAAAATATT-TTCTCTTTTATTTAAAACTGCCATCTAACACGACAGTTTCAATAT
* * * * * *
17934049 AATTGTATGTGACTGAGCTGCTTGTATTTGGTAAGGAGATTCTTTGTCGATTTCATCAATATTGT
64 AAATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTCGATTTCATCAATTTTGT
** * * * *
17934114 TTGTTTTCTCAAACTTAAGACGATAATTTGAATTCTACAAGTAAATAAAAATTAAGGGAGCAAAT
129 TT-TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTTAATAAAAA-TAAGGGA-CCAAT
* * * * * *
17934179 CCGCCCAAATAAATAAGTAAAAGGACTATTCTTAGAATTAAACCTAGAATAATATTTGTTCCACT
191 CCGCACAAATCAACAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTT-CACT
* * *
17934244 CAACTCTGACACGCGATG-TTT
255 TAAATTTGACACGC-A-GCTTT
* * * * * *
17934265 TTAATATAAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGACCGTTTCAAT
1 TTGATATAAAAAAAT-AT--TTTCTCTTTTAT-TTAAAACTGCCATCTAACACGACAGTTTCAAT
* * * * * *
17934330 ATAATTTCTTGTGATTGAGTTGCTTGTATTTGGCAGAGAGATTCTTCGTCGATTTCATCAATTTT
62 ATAAATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTCGATTTCATCAATTTT
* * * * * *
17934395 CTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAAAAA
127 GTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTTAATAAAAA
17934447 AAGTGGGAAA
Statistics
Matches: 605, Mismatches: 92, Indels: 63
0.80 0.12 0.08
Matches are distributed among these distances:
267 9 0.01
268 194 0.32
269 7 0.01
270 4 0.01
271 1 0.00
274 1 0.00
275 4 0.01
276 2 0.00
278 4 0.01
279 128 0.21
280 100 0.17
281 30 0.05
282 44 0.07
283 77 0.13
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (274 bp):
TTGATATAAAAAAATATTTTCTCTTTTATTTAAAACTGCCATCTAACACGACAGTTTCAATATAA
ATGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTCGATTTCATCAATTTTGTTT
TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTTAATAAAAATAAGGGACCAATCCGCA
CAAATCAACAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTCACTTAAATT
TGACACGCAGCTTT
Found at i:17935376 original size:281 final size:275
Alignment explanation
Indices: 17934455--17935801 Score: 1380
Period size: 281 Copynumber: 4.8 Consensus size: 275
17934445 AAAAGTGGGA
* * *
17934455 AAAATAATATTTTTTTTCTTTGGATTCTGACACG-TAGCGTTCTTGATATAAGAAAATATTTTCT
1 AAAATAATA-TTTGTTTCTTTGGATTCTGACACGCGA-CGTTCTTGATATAAAAAAATATTTTCT
* * *
17934519 CTTTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGTTGCTT
64 CTTTTATTTT-AAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTT
*
17934584 GTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAA----TTTTTTTTCTCAAAGTTAAGACGCC
128 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCC
*
17934645 AATTTGAATGCTACGAGTAAATAAAATTTGTGGGACCAAATCCGCACAAATCAACAAGTACAAGG
193 AATTTGAATGCTACGAGTAAATAAAA-TAGTGGGACCAAATCCG--CAAATCAACAAGTACAAGG
*
17934710 ACTATTCTTAAAATTTAATCT
255 ACTATTCTTAAAATTTAAACT
* * * * *
17934731 AAAGTAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTGATATAAAAAAATATTTTCTGT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTCTTGATATAAAAAAATATTTTCTCT
* *
17934796 TTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGT
66 TTTATTTT-AAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGT
** * * ** ** *
17934861 ATTTGGCAGGGAGATTCTTTTTTCATTTCATCTATTTTGATTTTTTCTCAAACATAAGAGGCCAA
130 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAA
* * * * * *
17934926 TTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTACAAGGAC
195 TTTGAATGCTACGAGTAAATAAAATA-GTGGGACCAAA--TCCGCAAATCAACAAGTACAAGGAC
*
17934991 TATTCTTAAAATTTAAGCT
257 TATTCTTAAAATTTAAACT
* ***** * * * ** * * **
17935010 ATAATAATATTTGTTTCACACAACTCTAACATGCGATATTTTTAATATAAAAAATAATAAATTCT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTCTTGATAT-AAAAA-AATATTTTCT
* ** * * * * *
17935075 TTTTTATCCTAAATCTGCCATCTAACGCGACCGTTTCAA-TATAATTTCATGTGATTGAGCTGCT
64 CTTTTATTTTAAA-CTGCCATCTTACGCGACGGTTTCAAGT-TAAATGCATGTGACTGAGCTGCT
* * * *
17935139 TGTATTAGGCAGGGAGATTCTTCGTCGATTTCATCAACTTTCTTTATTTTTTCACAAAGTTTAGA
127 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TTT-TTTTTTCTCAAAGTTAAGA
* *
17935204 CGCTAATTTGAATGCTACGAGTCAATAAAATAGTGGGACCAAATCCAGACAAATCAACAAGTACA
189 CGCCAATTTGAATGCTACGAGTAAATAAAATAGTGGGACCAAATCC-G-CAAATCAACAAGTACA
17935269 AGGACTATTCTTAAAATTTAAACT
252 AGGACTATTCTTAAAATTTAAACT
* * ** *
17935293 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTGTTTATATATGAAAATATTTCCTCT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTCTTGATATAAAAAAATATTTTCTCT
* * *
17935358 TTTATTTTGAAACTGCCATCTTACGC-AGCGGTTTCAAGTTAAATGCTTGTGACGGAGCTTCTTG
66 TTTATTTT-AAACTGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTG
* * * * * *
17935422 TATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTCCTCAAACTTAAGAGGCCA
129 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCA
* * * * * * *
17935487 ATTTCAATGCTAC-ATGTAAATAAAAATTGAGGGACCAATTCTGCGCAAATCAAGAAGTACTAGC
194 ATTTGAATGCTACGA-GTAAAT-AAAATAGTGGGACCAAATC--CGCAAATCAACAAGTACAAGG
*
17935551 ACTATTCTTAAAATTTAACCT
255 ACTATTCTTAAAATTTAAACT
** * * ** * * *
17935572 AAAATAATATTTGTTTCACTCGACTCTGACAAACGGCGTTATTGATATAACAAATAAT-TAATTC
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTCTTGATATAA-AAA-AATAT-TTTC
* * * * * * * * *
17935636 TATTTTATCTTAAGACAGCTATCTTACGCGACGCTTTTATGATAATTGCATGTGACTGAGCTGCT
63 TCTTTTATTTTAA-ACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCT
* * * * *
17935701 TGTATTTGGTAAGGAGATTCTTTGTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCC
127 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGC
* * *
17935766 CAATTTGAATACTACAAGTAAATAAAAAAAGTGGGA
192 CAATTTGAATGCTACGAGTAAAT-AAAATAGTGGGA
17935802 AACATAATAT
Statistics
Matches: 872, Mismatches: 169, Indels: 55
0.80 0.15 0.05
Matches are distributed among these distances:
275 137 0.16
276 8 0.01
277 1 0.00
278 35 0.04
279 219 0.25
280 19 0.02
281 315 0.36
282 13 0.01
283 84 0.10
284 41 0.05
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (275 bp):
AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTCTTGATATAAAAAAATATTTTCTCT
TTTATTTTAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTA
TTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAAT
TTGAATGCTACGAGTAAATAAAATAGTGGGACCAAATCCGCAAATCAACAAGTACAAGGACTATT
CTTAAAATTTAAACT
Found at i:17935737 original size:562 final size:559
Alignment explanation
Indices: 17934535--17935801 Score: 1741
Period size: 562 Copynumber: 2.3 Consensus size: 559
17934525 TTTTAAAACT
* * * * *
17934535 GCCATCTTACACGACGGTTTCAAGT-TAAATGCATGTGATTGAGTTGCTTGTATTTGGCAAGGAG
1 GCCATCTAACGCGACCGTTTCAA-TATAATTGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAG
17934599 ATTCTTCGTTGATTTCATCAA----TTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACG
65 ATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACG
*
17934660 AGTAAATAAAATTTGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATT
130 AGTAAATAAAA-TAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATT
* * *
17934725 TAATCTAAAGTAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTGATATAAAAAAATATT
194 TAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATATT
* *
17934790 TTCTGTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCT
259 TCCTCTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCT
*
17934855 GCTTGTATTTGGCAGGGAGATTCTTTTTTCATTTCATCTATTTTGATTTTTTCTCAAACATAAGA
324 GCTTGTATTTGGCAGGGAGATTCTTCTTTCATTTCATCTATTTTGATTTTTTCTCAAACATAAGA
*
17934920 GGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTAC
389 GGCCAATTTCAATGCTATCAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTAC
* * * ** *
17934985 AAGGACTATTCTTAAAATTTAAGCTATAATAATATTTGTTTCACACAACTCTAACATGCGATATT
454 AAGCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAACGACATT
* * *
17935050 TTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAATCT
519 ATTAATATAAAAAATAATAAATTCTATTTTATCCTAAATCA
* * *
17935091 GCCATCTAACGCGACCGTTTCAATATAATTTCATGTGATTGAGCTGCTTGTATTAGGCAGGGAGA
1 GCCATCTAACGCGACCGTTTCAATATAATTGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAGA
* * * *
17935156 TTCTTCGTCGATTTCATCAACTTTCTTTATTTTTTCACAAAGTTTAGACGCTAATTTGAATGCTA
66 TTCTTCGTTGATTTCATCAA-TTT-TTT-TTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTA
*
17935221 CGAGTCAATAAAATAGTGGGACCAAATCCAG-ACAAATCAACAAGTACAAGGACTATTCTTAAAA
128 CGAGTAAATAAAATAGTGGGACCAAATCC-GCACAAATCAACAAGTACAAGGACTATTCTTAAAA
* * * * **
17935285 TTTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTGTTTATATATGAAAATA
192 TTTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATA
* * *
17935350 TTTCCTCTTTTATTTTGAAACTGCCATCTTACGC-AGCGGTTTCAAGTTAAATGCTTGTGACGGA
257 TTTCCTCTTTTATTTTAAAAATGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGACGGA
* * *
17935414 GCTTCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTG-TTTTTTCCTCAAACTT
321 GCTGCTTGTATTTGGCAGGGAGATTCTTCTTTCATTTCATCTATTTTGATTTTTT-CTCAAACAT
*
17935478 AAGAGGCCAATTTCAATGCTA-CATGTAAATAAAAATTGAGGGACC-AATTCTGCGCAAATCAAG
385 AAGAGGCCAATTTCAATGCTATCA-GTAAATAAAAAATGAGGGACCAAATT-TGCGCAAATCAAG
* * * *
17935541 AAGTACTAGCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACAAAC
448 AAGTACAAGCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAAC
* * * * * *
17935606 GGCGTTATTGATATAACAAATAATTAATTCTATTTTATCTTAAGA-CA
513 GACATTATTAATATAAAAAATAATAAATTCTATTTTATCCTAA-ATCA
* * * * *
17935653 GCTATCTTACGCGA-CGCTTT-TATGATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAAGGA
1 GCCATCTAACGCGACCG-TTTCAAT-ATAATTGCATGTGATTGAGCTGCTTGTATTTGGCAAGGA
* * * *
17935716 GATTCTTTGTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATACTAC
64 GATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTAC
* *
17935781 AAGTAAATAAAAAAAGTGGGA
129 GAGTAAAT-AAAATAGTGGGA
17935802 AACATAATAT
Statistics
Matches: 622, Mismatches: 72, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
555 1 0.00
556 74 0.12
559 38 0.06
560 13 0.02
561 19 0.03
562 430 0.69
563 47 0.08
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (559 bp):
GCCATCTAACGCGACCGTTTCAATATAATTGCATGTGATTGAGCTGCTTGTATTTGGCAAGGAGA
TTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGA
GTAAATAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTA
AACTAAAATAATATTTGTTTCTTTGGATTCTGACACACGACATTCTTGATATAAAAAAATATTTC
CTCTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCTGC
TTGTATTTGGCAGGGAGATTCTTCTTTCATTTCATCTATTTTGATTTTTTCTCAAACATAAGAGG
CCAATTTCAATGCTATCAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATCAAGAAGTACAA
GCACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCACACAACTCTAACAAACGACATTAT
TAATATAAAAAATAATAAATTCTATTTTATCCTAAATCA
Found at i:17936314 original size:279 final size:278
Alignment explanation
Indices: 17935805--17936376 Score: 767
Period size: 279 Copynumber: 2.1 Consensus size: 278
17935795 AGTGGGAAAC
* *
17935805 ATAATATTTGTTTCTTTGGATTCTGGCACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTTT
1 ATAATATTTGTTTCTTTGGATTCTGCCACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTAT
* * ** *
17935870 ATTTTAAAACAGCCATCTTACGCAATTTCAAGTTAAATGCATGTGATTGAGCTACTTGTATTTGG
66 ATTTTAAAACAGCCATATTACGCAATTTCAAGTTAAATGCATATGACGGAGCTACTTGTATATGG
* * * **
17935935 CAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGACGCCAATTT
131 CAGGGAGATTCTTCGTTCATTTCATC-ATATTCTTGTTTTTTTCTCAAACATAAGACGCCAATTT
* *
17936000 GAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAAAG-AGTACAAGAACTA
195 CAATGCTACGAGTAAATAAAAATAGTGGGACCAAATACGCACAAAT-AAAGAAGTACAAGAACTA
*
17936064 TTCTTAAAATTTAAACTAAA
259 TTCTTAAAATTGAAACTAAA
* * * *
17936084 GTAATATTTCTTTCTTTGGATTCTGCCACGCGGTGTTCTTGATATAAAAAAATATTTTCTCTTAT
1 ATAATATTTGTTTCTTTGGATTCTGCCACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTAT
* * * *
17936149 ATTTTAAAACTGTCATATTACGCAGCGGTTTCAAGTTAAATGCATATGACGGAGCTGCTTGTATA
66 ATTTTAAAACAGCCATATTACGCA---ATTTCAAGTTAAATGCATATGACGGAGCTACTTGTATA
* *
17936214 TGGCAGGGAGATTCTTCTTTCATTTCATC-TATT-TTGTTTTTTTCTCAAACATAAGAGGCCAAT
128 TGGCAGGGAGATTCTTCGTTCATTTCATCATATTCTTGTTTTTTTCTCAAACATAAGACGCCAAT
* * * * *
17936277 TTCAATGTTACGAGTAAATAAAAA-A-TGAGGAACCAAATATGGACAAATGAAGAAGTACAAGGA
193 TTCAATGCTACGAGTAAATAAAAATAGTG-GG-ACCAAATACGCACAAATAAAGAAGTACAAGAA
*
17936340 CTATTCTTAAAATTGAAGCTAAA
256 CTATTCTTAAAATTGAAACTAAA
17936363 ATAATATTTGTTTC
1 ATAATATTTGTTTC
17936377 ACTCGACTCT
Statistics
Matches: 254, Mismatches: 33, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
277 2 0.01
278 6 0.02
279 184 0.72
280 3 0.01
282 59 0.23
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.37
Consensus pattern (278 bp):
ATAATATTTGTTTCTTTGGATTCTGCCACGCAGCGTTCTTGATATAAAAAAATATTTTCTCTTAT
ATTTTAAAACAGCCATATTACGCAATTTCAAGTTAAATGCATATGACGGAGCTACTTGTATATGG
CAGGGAGATTCTTCGTTCATTTCATCATATTCTTGTTTTTTTCTCAAACATAAGACGCCAATTTC
AATGCTACGAGTAAATAAAAATAGTGGGACCAAATACGCACAAATAAAGAAGTACAAGAACTATT
CTTAAAATTGAAACTAAA
Found at i:17936499 original size:71 final size:71
Alignment explanation
Indices: 17936416--17936558 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
17936406 ATAAAAATAA
17936416 TAAATTCTTTTCTTTCCTAAATCTCCCATCTAACGCGACCGTTTCAATATAATTTCATATGACTG
1 TAAATTCTTTTCTTTCCTAAATCTCCCATCTAACGCGACCGTTTCAATATAATTTCATATGACTG
17936481 AGCTGC
66 AGCTGC
17936487 TAAATTCTTTTCTTTCCTAAATCTCCCATCTAACGCGACCGTTTCAATATAATTTCATATGACTG
1 TAAATTCTTTTCTTTCCTAAATCTCCCATCTAACGCGACCGTTTCAATATAATTTCATATGACTG
17936552 AGCTGC
66 AGCTGC
17936558 T
1 T
17936559 TGTATTAGGC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (71 bp):
TAAATTCTTTTCTTTCCTAAATCTCCCATCTAACGCGACCGTTTCAATATAATTTCATATGACTG
AGCTGC
Found at i:17937172 original size:279 final size:277
Alignment explanation
Indices: 17936535--17937494 Score: 947
Period size: 279 Copynumber: 3.4 Consensus size: 277
17936525 CCGTTTCAAT
* * * * *
17936535 ATAATTTCATATGACTGAGCTGCTTGTATTAGGCAGGGAGATTTTTCGTTGATTTCATCAACATT
1 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATC-A-A-T
* * * * * * *
17936600 CTTTTTTTTTTTCTCAATGTTTAGACGCCAATTTGAATGCTACGAGTAAATAAAAATGGTGGGAC
63 -TTTGTTTTTTTCTCAAAGTTAAGAGGCTAATTTGAATGCTACGAGTAAATAAAAATAGAGGGAC
* *
17936665 CAAATCCACAG-AAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGT
127 CAAATCCGC-GCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGT
* * * * * *
17936729 TTC-TTTGGATTCTGACACGCGGCGTTGTTGATATAAAAA-AA-TATTTTCTCTTTTATTTTGAA
191 TTCACTT-GACTCTGACA--CGGCGTTTTTGATATAAAAATAATTAATTACT-TTTTATCTT-AA
* *
17936791 ACTTCCATCTTCCGCAGCAG-TTTCAA-G
251 ACTGCCATCTTACGCAGC-GCTTT-AATG
* ** * * * *
17936818 -TTATATGTTTGTGAC-GAAGCTTCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATT
1 ATAAT-TGCATGTGACTG-AGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATT
* * * *
17936881 TTGTTTTTTTCTCAAACTTAAGAGGCTAATTTCAATGCTACGTGTAAATAAAAATCGAGGGACCA
64 TTGTTTTTTTCTCAAAGTTAAGAGGCTAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCA
* * * * * *
17936946 ATTCTGCGCAAAGCAAGAAGTACTAGGACTATTCTTATAATTTAACCTAAAATAATATTTGTTTC
129 AATCCGCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTC
* *
17937011 ACTTGACTCTGACACGGCGTTTTTGATATAACAAATAATTAATTAGTTTTT-TCTTAAGACTGCT
194 ACTTGACTCTGACACGGCGTTTTTGATATAA-AAATAATTAATTACTTTTTATCTTAA-ACTGCC
*
17937075 ATCTTACGCAGCGCTTTTATG
257 ATCTTACGCAGCGCTTTAATG
* * * *
17937096 ATAATTGCATGTGACTGAGCGGCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATT
1 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTT
* * * * *
17937161 GTTTGTTTTCTCAAATTTAAGAGGCTAATTTGAATTCTACAAGTAAATAAAAATAAAGGGAGCAA
66 GTTT-TTTTCTCAAAGTTAAGAGGCTAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAA
* * * * * *
17937226 ATCCGCCCAAATAAATAAGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTTCA
130 ATCCGCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCA
* * * *
17937291 CTAGACTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATT-CTTTTTTATCCTAAAACTG
195 CTTGACTCTGACACG-G-CGTTTTTGATAT-AAAAATAATTAATTAC-TTTTTAT-CTTAAACTG
* *
17937355 CCATCTAACGCGGC-CGTTTCAAT-
255 CCATCTTACGCAGCGC-TTT-AATG
* * *
17937378 ATAATTTCATGTGACTGAGCTGCTTGTATTTGAC-AGAGAGATTCTTCGTTGATTTCATTAATTT
1 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAG-GAGATTCTTCGTTGATTTCATCAATTT
* ** * * * *
17937442 TCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAACTAAATAAAAA
65 TGTTTTTTTCTCAAAGTTAAGAGGCTAATTTGAATGCTACGAGTAAATAAAAA
17937495 AAGTGGGAAA
Statistics
Matches: 565, Mismatches: 90, Indels: 46
0.81 0.13 0.07
Matches are distributed among these distances:
277 20 0.04
278 78 0.14
279 251 0.44
280 9 0.02
281 74 0.13
282 83 0.15
283 50 0.09
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (277 bp):
ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTT
GTTTTTTTCTCAAAGTTAAGAGGCTAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
TCCGCGCAAATCAACAAGTACAAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCAC
TTGACTCTGACACGGCGTTTTTGATATAAAAATAATTAATTACTTTTTATCTTAAACTGCCATCT
TACGCAGCGCTTTAATG
Found at i:17938328 original size:282 final size:281
Alignment explanation
Indices: 17937562--17938565 Score: 1040
Period size: 282 Copynumber: 3.6 Consensus size: 281
17937552 AAAAAATATT
* * * * * *
17937562 TTCTCTTTTATTTTAAAACTGTCATCTTACGCGGCGGTTTCAAGTTAAATGCATCTGATTCAGCT
1 TTCTCTTTTATCTTAAAACTGCCATCTTACGCGGCGCTTTCAAGATAAATGCATGTGATTGAGC-
* * *
17937627 TAC-TGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTACTCAAAGTT
65 TACTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTT-GTTTGTTTT-CTCAAACTT
** *
17937691 AAGACGCCAATTTGAATGCTATGAGTAAATAAAAA-TAGTGGGACCAAATCTGCACAAATCAACA
128 AAGACGCCAATTTGAATGCTACAAGTAAATAAAAATTA-AGGGACCAAATCTGCACAAATCAACA
* * * *
17937755 AGTACAAGGACTATTCTTAAAATTTAAACTAAAGTAATATTTGTTTC-TTTGGATTCTGACATGC
192 AGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCATTT-GACTCTGACACGC
* * *
17937819 GGCGTTGTTGATATAAAAA-AA-TATT
256 GGCGTTTTTAATATAAAAATAATTA-A
* * * * * * * *
17937844 TTCTCTTTTATTTTGAAATTGCCATCTTACGCAGCGGTTTCAAGTTAAATGCTTGT-AATGAAGC
1 TTCTCTTTTATCTTAAAACTGCCATCTTACGCGGCGCTTTCAAGATAAATGCATGTGATTG-AGC
* * ** *
17937908 TGCTTGTATTTGGCAGGGAGATTCTTTTTTGATTTCATCTATTTTGTTT-TTTTCTCAAACTTAA
65 TACTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTGTTTTCTCAAACTTAA
* * ** ** * * *
17937972 GAGGCCAATTTCAATGCTACCTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATCAAGAAGT
130 GACGCCAATTTGAATGCTACAAGTAAATAAAAATTAAGGGACCAAATCTGCACAAATCAACAAGT
* * **
17938037 ACTAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCATTTGACTCTGACACATGGCG
195 ACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCATTTGACTCTGACACGCGGCG
* *
17938102 TTTTTTATGTAACAAATAATTAA
260 TTTTTAATATAA-AAATAATTAA
* * * * * *
17938125 TTCTTTTTTATCTTAAGACTGCTATCTTACGCGGCGCTTTTATGATAATTGCATGTGATTGAGCT
1 TTCTCTTTTATCTTAAAACTGCCATCTTACGCGGCGCTTTCAAGATAAATGCATGTGATTGAGCT
* * * * *
17938190 GCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTTTGCTTTCTCAAACTTAAG
66 ACTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTGTTTTCTCAAACTTAAG
* * * * * * *
17938255 AGGCCAATTTGAATTCTACAAGTAAATAAAAATTAAGGGAGCAAATCCGCCCAAATAAATAAGTA
131 ACGCCAATTTGAATGCTACAAGTAAATAAAAATTAAGGGACCAAATCTGCACAAATCAACAAGTA
* * ** * *
17938320 AAAGGACTATTCTTAGAA-TTAAATCTAAAATAATATTTGTTTCACTCAACTTTGACACGCGACG
196 CAAGGACTATTCTTAGAATTTAAA-CTAAAATAATATTTGTTTCATTTGACTCTGACACGCGGCG
*
17938384 TTTTTAATAT-AAAATAATAAA
260 TTTTTAATATAAAAATAATTAA
* ** * * * * * * *
17938405 TTCTTTTTTATCCAAAAACTGCCATCTAACACGGC-CGTTTCAATATAATTTCATGTGACTAAGC
1 TTCTCTTTTATCTTAAAACTGCCATCTTACGCGGCGC-TTTCAAGATAAATGCATGTGATTGAGC
* * * *
17938469 TACTTGTATTTGGCAAAGAGATTCTTCGTTGATTTCATCAATTTT-CTTGTTCTCTCAAAGTTAA
65 TACTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTGTTTTCTCAAACTTAA
* * *
17938533 GACCCCAATTTGAATTCTACAAGCAAATAAAAA
130 GACGCCAATTTGAATGCTACAAGTAAATAAAAA
17938566 AAGTGGGAAA
Statistics
Matches: 602, Mismatches: 109, Indels: 25
0.82 0.15 0.03
Matches are distributed among these distances:
279 171 0.28
280 109 0.18
281 102 0.17
282 220 0.37
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (281 bp):
TTCTCTTTTATCTTAAAACTGCCATCTTACGCGGCGCTTTCAAGATAAATGCATGTGATTGAGCT
ACTTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTGTTTGTTTTCTCAAACTTAAG
ACGCCAATTTGAATGCTACAAGTAAATAAAAATTAAGGGACCAAATCTGCACAAATCAACAAGTA
CAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCATTTGACTCTGACACGCGGCGT
TTTTAATATAAAAATAATTAA
Found at i:17939352 original size:281 final size:276
Alignment explanation
Indices: 17938574--17939354 Score: 974
Period size: 281 Copynumber: 2.8 Consensus size: 276
17938564 AAAAGTGGGA
* **
17938574 AAAATAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAAATATTTTCTCTT
1 AAAATAATATTTGTTTCTTTAGATTCTGACACGCGGCGTTCTTGATATAAAAAATATTTTCTCTT
* * *
17938639 TTATTTTAATACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGTG
66 TTATCTTAA-ACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTA
17938704 TTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGACGCC
130 TTTGGCAGGGAGATTCTTCGTTGATTTCATCAA---T-TTTTTTTTTTCTCAAAGTTAAGACGCC
*
17938769 AATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCAAAAATCAACAAGTACAAGG
191 AATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCAAAAATCAACAAGTACAAGG
17938834 ACTATTCTTAAAATTTAAACT
256 ACTATTCTTAAAATTTAAACT
* * * *
17938855 AAAGTAATATTTGTTTCTTTAGATTCTGACATGCGGCGTTGTTGATAAAAAAAATATTTTCTCTT
1 AAAATAATATTTGTTTCTTTAGATTCTGACACGCGGCGTTCTTGATATAAAAAATATTTTCTCTT
* * * *
17938920 TTATTCTGAAACTGCCATCTTACGCAGCGGTTTCAAGTTAAATGCTTGTGAC-GAAGCTACTTGT
66 TTA-TCTTAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTG-AGCTGCTTGT
* * * *
17938984 ATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGAGGCCAA
129 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTTCTCAAAGTTAAGACGCCAA
* * * * * ** * *
17939049 TTTCAATGCTACGTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATCAAGAAGTACTAGGAC
193 TTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCAAAAATCAACAAGTACAAGGAC
* *
17939114 TATTCTTAGAATTTAACCT
258 TATTCTTAAAATTTAAACT
* * * * * *
17939133 AAAATAATATTTGTTTCACTT-GACTCTGACACACGGCGTTTTTTATATAACAAATAATTAATTC
1 AAAATAATATTTGTTTC-TTTAGATTCTGACACGCGGCGTTCTTGATATAAAAAAT-ATT--TTC
* * * * * * *
17939197 TGTTTTATCTTAAGACTGCTATCTTACGCGGCGCTTTTATGATAATTGCATGTGACTGAGCTGCT
62 TCTTTTATCTTAA-ACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCT
* * *
17939262 TGTATTTGGTAGAGAGATTCTTCGTTGATTTCATC-ATTTTTCTGTTTTTCTCAAAGTTAAGACC
126 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTT-T-TTTTTCTCAAAGTTAAGACG
* *
17939326 CCAATTTGAATTCTACAAGTAAATAAAAA
189 CCAATTTGAATGCTACGAGTAAATAAAAA
17939355 AGTGGGAAAA
Statistics
Matches: 429, Mismatches: 60, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
277 3 0.01
278 140 0.33
279 6 0.01
280 12 0.03
281 263 0.61
282 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (276 bp):
AAAATAATATTTGTTTCTTTAGATTCTGACACGCGGCGTTCTTGATATAAAAAATATTTTCTCTT
TTATCTTAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGTAT
TTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTCTCAAAGTTAAGACGCCAATTT
GAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCAAAAATCAACAAGTACAAGGACTAT
TCTTAAAATTTAAACT
Found at i:17939728 original size:787 final size:780
Alignment explanation
Indices: 17937785--17943457 Score: 4392
Period size: 787 Copynumber: 7.0 Consensus size: 780
17937775 AATTTAAACT
* ** *
17937785 AAAGTAATATTTGTTTCTTTGGATTCTGACATGCGGCGTTGTTGATATAAAAAAATATTTTCTCT
1 AAAGTAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATAT-AAAAAATATTTTCTCT
* * * *
17937850 TTTATTTTGAAATTGCCATCTTACGC-AGCGGTTTCAAGTTAAATGCTTGT-AATGAAGCTGCTT
65 TTTATTTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGATTG-AGCTGCTT
** * * * *
17937913 GTATTTGGCAGGGAGATTCTTTTTTGATTTCATCTATTTT-GTTTTTTTCTCAAACTTAAGAGGC
128 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGC
* ** * * * * * *
17937977 CAATTTCAATGCTACCTGTAAATAAAAATCGAGGGACCAATTCTGCGCAAATCAAGAAGTACTAG
193 CAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAG
* * * * *
17938042 GACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCATTTGACTCTGACACATGGCGTTTTT
258 GACTATTCTTAAAATTTAAACTAAAATAATATTTGTTTC-TTTGATTCTGACACACGGCGTTGTT
* * * * * * * * * * *
17938107 TATGTAACAAATAATTAATTCTTTTTTATCTTAAGACTGCTATCTTACGCGGCGCTTTTATGATA
322 GATATAA-AAATTATT--TTCTGTTTTATTTTAAAACTGCCATCTTACGC-GCGGTTTCAAGTTA
* * * * * * * *
17938172 ATTGCATGTGATTGAGCTGCTTGTATTTGGTAAGGAGATTCTTCGTCGATTTCATCAATATTGTT
383 AATGCATGTGA-CGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTT
* * * * * *
17938237 TGCTTTCTCAAACTTAAGAGGCCAATTTGAATTCTACAAGTAAATAAAAATTAAGGGAGCAAATC
447 T-TTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAA-TGAGGGACCAAATC
* * * * * *
17938302 CGCCCAAATAAATAAGTAAAAGGACTATTCTTAGAATTAAATCTAAAATAATATTTGTTTCACTC
510 TGCGCAAATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTC
* * *
17938367 AACTTTGACACGCGACGTTTTTAATAT-AAAATAATAAATTCTTTTTTATCCAAAAACTGCCATC
575 GACTCTGACACGCGACGTTTTTAATATAAAAATAATAAATTCTTTTTTATCC-TAAACTGCCATC
* * * *
17938431 TAACACGGCCGTTTCAATATAATTTCATGTGACTAAGCTACTTGTATTTGGCAAAGAGATTCTTC
639 TAACGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTC
* * *
17938496 GTTGATTTCATCAATTTTCTTGTTCTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGCAAAT
704 GTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAAT
17938561 AAAAAAAGTGGGA
769 -AAAAAAGTGGGA
*
17938574 AAAATAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAAATATTTTCTCTT
1 AAAGTAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAAATATTTTCTCTT
* * *
17938639 TTATTTTAATACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGTG
66 TTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGTA
17938704 TTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGACGCC
131 TTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTC--TTTTTTTTCTCAAAGTTAAGACGCC
* *
17938769 AATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCAAAAATCAACAAGTACAAGG
194 AATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGG
* **
17938834 ACTATTCTTAAAATTTAAACTAAAGTAATATTTGTTTCTTTAGATTCTGACATGCGGCGTTGTTG
259 ACTATTCTTAAAATTTAAACTAAAATAATATTTGTTTCTTT-GATTCTGACACACGGCGTTGTTG
* * * * *
17938899 ATAAAAAAAATATTTTCTCTTTTATTCTGAAACTGCCATCTTACGCAGCGGTTTCAAGTTAAATG
323 ATATAAAAATTATTTTCTGTTTTATTTTAAAACTGCCATCTTACGC-GCGGTTTCAAGTTAAATG
* *
17938964 CTTGTGACGAAGCTACTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTT
387 CATGTGACG-AGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTT
* *
17939029 TCTCAAACTTAAGAGGCCAATTTCAATGCTACGTGTAAATAAAAATCGAGGGACCAATTCTGCGC
451 TCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAT-GAGGGACCAAATCTGCGC
* * *
17939094 AAATCAAGAAGTACTAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTTGACTC
515 AAATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGACTC
* * * * * * * *
17939159 TGACACACGGCGTTTTTTATATAACAAATAATTAATTCTGTTTTATCTTAAGACTGCTATCTTAC
580 TGACACGCGACGTTTTTAATATAA-AAATAATAAATTCTTTTTTATCCTAA-ACTGCCATCTAAC
* * *
17939224 GCGG-CGCTTT-TATGATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAGAGAGATTCTTCGT
643 GCGGCCG-TTTCAAT-ATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGT
* *
17939287 TGATTTCATCATTTTTCTGTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAA
706 TGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAA
17939352 AAAAGTGGGA
771 AAAAGTGGGA
* * *
17939362 AAAGTAAAATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAATTTATTTTCTTT
1 AAAGTAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAA-ATATTTTCTCT
17939427 TTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
65 TTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
17939492 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGCCA
130 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGCCA
*
17939557 ATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGA
195 ATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGA
* * * *
17939622 CAATTCTTAAAATTTAAACTAAAGTAATA-TTGTTTCTTTGGATTTTGACACGCGGCGTTGTTGA
260 CTATTCTTAAAATTTAAACTAAAATAATATTTGTTTCTTT-GATTCTGACACACGGCGTTGTTGA
*
17939686 TATAAAAATGTATTTTCTGTTTTATTTTAAAACTGTCATCTTACGCAGCGGTTTCAAGTTAAATG
324 TATAAAAAT-TATTTTCTGTTTTATTTTAAAACTGCCATCTTACGC-GCGGTTTCAAGTTAAATG
* * * *
17939751 CATGTGATGGAGCTGCTTGTATTTGGAAGGGAGATTCTTCTTTGATTTCATCTATTTTGTCTTTC
387 CATGTGA-CGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTT
* * * *
17939816 TCTCAAACATAAGAGGCCAATTTCAATGCTAAGAGTAGATAAAAAATGAGGGACCAAATCTGTGC
451 TCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAAT-AAAAATGAGGGACCAAATCTGCGC
* *
17939881 AAATAAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTC
515 AAATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGACTC
** *
17939946 CAACACGCGACATTTTTAATATAAAAATAATAAATTCTTTTTTATCCTAAATCTGCCATCTAACG
580 TGACACGCGACGTTTTTAATATAAAAATAATAAATTCTTTTTTATCCTAAA-CTGCCATCTAACG
* * *
17940011 CGACCGTTTCAATATAATTTCATGTAACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGA
644 CGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTTGA
* * * * *
17940076 TTTCATCAACTTTCTTTTTTTTTTCCTCAAAGTTTAGACGCCAATTTGAATGCTACGAGTAAATA
709 TTTCATCAA--TT-TTCTTTTTTT-CTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATA
*
17940141 AGAATAGTGGGA
770 A-AAAAGTGGGA
* *** * ** * * *
17940153 CCAAATCGACACAAATAAACAAG-TAC-AAGGACTATTCTTAAAACTTAG-G--C----TA-AAA
1 --AAA--G----TAAT--ATTTGTTTCTTTGG---ATTC-TGACACGTAGCGTTCTTGATATAAA
* * * * * * * * * * ** ** *
17940208 TAGTATTTGTTTCTTTGGATTCTGACAC-GCGGCGTTGTTGATATAAAGAAATATTTTCTCTTTT
52 AAATATTT-TCTCTTT-TATTTTAAAACTGC--C-------ATCTTACG--CGA----CGGTTTC
** * * * *** * * ** * * * ** *
17940272 ATTTTGAAACGGCCATCTTACACAGCGGTTTCAAGTTAGATGCTTGTGACGAAGCTGC-TTGTAC
100 AAGTT-AAA-TG-CATGTGATTGAGCTGCTTGTA-TTTG--GC-AGGGA-GATTCTTCGTTG-A-
** * *
17940336 TTGGT-AGGGAGATTCTTCTTTTATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGAGGCCAAT
155 TT--TCA-TCA-ATT-TTCT------------------TTTTTTTCTCAAAGTTAAGACGCCAAT
* * * * * ** *
17940400 TTCAATGCTACGTGTAAATAAAAATCA-AGGGACCAATTCTGCGCAAATCAGGAAGTACTAGGAC
197 TTGAATGCTACGAGTAAATAAAAAT-AGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGAC
* * * * * * * *
17940464 TATTCTTAGAATTTAACCTAAAAAAATATTTTTTTCACTTGACTCTGACACACGGCGTTTTTTAT
261 TATTCTTAAAATTTAAACTAAAATAATATTTGTTTC-TTTGATTCTGACACACGGCGTTGTTGAT
* * * * * * * * * * *
17940529 ATAACAAATAATTATTTCTTTTTTATCTTAAGACTACTATCTTACGCGACGCTTTTATGATAATT
325 ATAA-AAATTA-T-TTTCTGTTTTATTTTAAAACTGCCATCTTACGCG-CGGTTTCAAGTTAAAT
* * * * * * *
17940594 GCATGTGACTGAGCTGCTTGTATTTGGTATGGTGATTCTTCGTCGATTTCATCAATATTGTTTGT
386 GCATGTGAC-GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTT-T
* * * * * * * * *
17940659 TTTCTCAAACTTATGAGGCCAATTTGATTTCTACAAGTAAATAAAAATTAACGGAGCAAATCCGC
449 TTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAA-TGAGGGACCAAATCTGC
* * * *
17940724 CCAAATAAATAAGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTTCACTCGAC
513 GCAAATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGAC
* *
17940789 TCTGACACGCGATGTTTTTAATATAAAAAATAATAAATTCCTTTTTATCCTACAACTGCCATCTA
578 TCTGACACGCGACGTTTTTAATAT-AAAAATAATAAATTCTTTTTTATCCTA-AACTGCCATCTA
*
17940854 ACGCGGCCGTTTCAATATAATTTCATGTTACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGT
641 ACGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGT
17940919 TGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATCA
706 TGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAAT-A
17940984 AAAAAGTGGGA
770 AAAAAGTGGGA
*
17940995 AAAATAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAGAAAATATTTTCTCT
1 AAAGTAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAA-AAAATATTTTCTCT
*
17941060 TTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
65 TTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
* *
17941125 ATTTGCCAAGGAGATTCTTCGTTGATTTCATCAA-----TTTTTTTTCTCAAAGTTAAGACGCCA
130 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGCCA
* *
17941185 ATTTGAATGCTACGAGTAAATAAAATTTA-CGGGACCAAATCCGCACAAATCAACAAGTACAAGG
195 ATTTGAATGCTACGAGTAAATAAAA-ATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGG
* * *
17941249 ACTATTCTTAAAA-TT----T-AAGTAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTG
259 ACTATTCTTAAAATTTAAACTAAAATAATATTTGTTTCTTT-GATTCTGACACACGGCGTTGTTG
* *
17941308 ATATAAAAAAATATTTTCTGTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAAT
323 ATAT-AAAAATTATTTTCTGTTTTATTTTAAAACTGCCATCTTACGCG-CGGTTTCAAGTTAAAT
17941373 GCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTT
386 GCATGTGAC-GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTG-TTTT
* * * *
17941438 TTTCTCAAGCATAAGAGGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGC
449 TTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAAT-AAAAATGAGGGACCAAATCTGC
* * ** * *
17941503 GCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGGTAAAATAATATTTGTTTCACACAAC
513 GCAAATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGAC
* * **
17941568 TCTAACATGCGATATTTTTAATATAAAAAATAAT-AATT-TTTTTTATCCTAAACTGCCATCTAA
578 TCTGACACGCGACGTTTTTAATAT-AAAAATAATAAATTCTTTTTTATCCTAAACTGCCATCTAA
* * *
17941631 TGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCCTGTATTTGGCAGGGAGATTCTTCGTT
642 CGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTT
* * *
17941696 GATTTCATCAATTTTCGTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGAGTAAATA
707 GATTTCATCAATTTTC--TTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATA
17941761 AAAATAGTGGGA
770 AAAA-AGTGGGA
* ** *** ** * **** * ** * **
17941773 CCAAA-TCCACACAAAT-CAAC-AAGTACAAGGACTATCTTA-AATT-TTAAGCTAAAATAATAT
1 --AAAGT--A-ATATTTGTTTCTTTGGATTCTGAC-A-CGTAGCGTTCTTGATATAAAA-AATAT
* * * * * **** *** *** **
17941833 TTGTCTCTTTGGATTCTGACAC-GCGGCGTTCTTGATATAAAATAAATATTTTCTCTTTTATTTG
58 TT-TCTCTTT-TATTTTAAAACTGC--C-ATC----T-T--ACGCGACGGTTTC-AAGTTAAAT-
* * * * * * **
17941897 GAATCTGCCATCTTACGCGGCGATTTTAAGTTAAAT-GCACGTGACGAAGC-T-GTTTGTATTTG
109 GCATGTG--AT-TGA-GCTGC--TTGT-A-TT---TGGCA-GGGA-GATTCTTCG-TTG-ATTT-
* * * ** * * *
17941959 GTATGGAGATTCTTATTTGATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGAGGCCAATTTCA
158 -CAT-CA-ATT-TTCTTTTTTTTC------------------TCAAAGTTAAGACGCCAATTTGA
* * **** * *
17942024 ATGCTACGAGTATATAAAAATCGAGGGACCAAATCTTTGCAAATCAAGAAGTACTAGGACTATTC
201 ATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
* * * * * *
17942089 TTAGAATTTAACCTAAAATAATATTTGTTTCACTTGACTCTGACACACGACGTTCTTGATATAAA
266 TTAAAATTTAAACTAAAATAATATTTGTTTC-TTTGATTCTGACACACGGCGTTGTTGATAT-AA
** * * * * * ** * * * *
17942154 AAATAATAAATTCTTTTTTATCTTAAGACTGCTATCTTATGCGGCACTTTTATGATAATTGCATG
329 AAAT--TATTTTCTGTTTTATTTTAAAACTGCCATCTTACGC-GCGGTTTCAAGTTAAATGCATG
* * * ** * * *
17942219 TGACTGAGCTGCTTGTTTTTGGTAAGGAGATTCTTGGTCGATTTCATCAATATTGTTTGTTTTCT
391 TGAC-GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTT-TTTTCT
* * * * * * * ** *
17942284 CAAACTTAAGAGGCTAATATGAATTCTACAAGTAAATAAAAATAAAGGGAACAAATCCACCCAAA
454 CAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAT-GAGGGACCAAATCTGCGCAAA
* * *
17942349 -ACAGTAAGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTTCACTCGACTCTG
518 TAAAG-AAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTG
* * * * * *
17942413 ACACACGACGTTTTTAAGATAAAAATAATAAATTCTATTTTATCCTAAAACTACCATCTAATGCT
582 ACACGCGACGTTTTTAATATAAAAATAATAAATTCTTTTTTATCCT-AAACTGCCATCTAACGCG
* *
17942478 CCCGTTTCAATATAATTTCATGTGACTGAGCT-CTTGTATTTGGCAGGGAGATTCTTCGTTGATT
646 GCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTTGATT
*
17942542 TCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATGCTACAAGTAAATAAAA
711 TCATCAATTTTC---TTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAAAA
*
17942607 ATTGTGGGA
773 A-AGTGGGA
* *** * ** ** * ** * * *
17942616 CCAAACCCGCACAAATCAACAAG-TAC-AAGGA--CT-ATTCTTAGAATT-TAAGCTA-AAATAA
1 --AAA---G---TAAT--ATTTGTTTCTTTGGATTCTGACACGTAGCGTTCT-TGATATAAAAAA
* * * * **** ** *
17942674 TAATTGTT-TCTTTTGATTCTGACAC-GCAGCGTTCTTGATATAAAAATATATTTCCTCTTTTAT
55 T-ATT-TTCTCTTTT-ATTTTAAAACTGC--C-ATC----T-T---ACGCGA----CGGTTTCA-
** * * * * ** *
17942737 TTTTAAACTGCCATCTTA-CGCA-CTAGTTTCAAGTTAAATTCAAGCGATTGAGCTGCTTGTATT
101 AGTTAAA-TG-CATGTGATTG-AGCT-GCTT---G-T--ATT-TGGC-A--G-G--G--AG-ATT
* ** * ** *
17942800 -TGGTAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGGCGCCAA
146 CT--T-CGTTGA-T-TTCATCAATTT--TC--------TTTTTTTTCTCAAAGTTAAGACGCCAA
* * * *
17942864 TTTGAATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTTCAAGGAT
196 TTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGAC
* * * ** *
17942929 TATTCTTAAAATTTAAACTAAAGTAATAGTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGAT
261 TATTCTTAAAATTTAAACTAAAATAATATTTGTTTCTTT-GATTCTGACACACGGCGTTGTTGAT
* *
17942994 ATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCTGCGGTTTCAAGTTAAATGC
325 AT-AAAAATTATTTTCTGTTTTATTTTAAAACTGCCATCTTACGC-GCGGTTTCAAGTTAAATGC
*
17943059 ATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGGATTTCATCTATTTTG-TTTTTT
388 ATGTGAC-GAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTT
* * *
17943123 CTCAAACTTAAGAGTCCAATTTTAATGCTACGAGT-AATAAAAAATGAGGGACCAAATCTACGCA
452 CTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAAT-AAAAATGAGGGACCAAATCTGCGCA
* * * * *
17943187 AATCAAGAAGTAGAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCAACTCT
516 AATAAAGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGACTCT
* ** * * *
17943252 GACACGTGATATTTTTAATATAAAAAACAATAAATTCTTTTTTATCCTAAAATTGCCATCTAATG
581 GACACGCGACGTTTTTAATAT-AAAAATAATAAATTCTTTTTTATCCT-AAACTGCCATCTAACG
* * * * *
17943317 CGGTCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAGGGATATTCTTCGTTGA
644 CGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTTGA
* * * *
17943382 TTTCATCAATTTTCTTTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTACGAGTAAA
709 TTTCATCAATTTTC------TTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAA
17943447 TAAAAATAGTG
768 TAAAAA-AGTG
17943458 CGACCAAATC
Statistics
Matches: 3934, Mismatches: 679, Indels: 486
0.77 0.13 0.10
Matches are distributed among these distances:
776 90 0.02
777 16 0.00
778 54 0.01
779 228 0.06
780 32 0.01
781 54 0.01
782 16 0.00
783 1 0.00
784 2 0.00
785 1 0.00
786 137 0.03
787 579 0.15
788 275 0.07
789 304 0.08
790 46 0.01
791 147 0.04
792 4 0.00
793 8 0.00
794 5 0.00
795 14 0.00
796 11 0.00
797 5 0.00
799 7 0.00
800 4 0.00
801 4 0.00
802 5 0.00
803 10 0.00
804 12 0.00
805 8 0.00
806 1 0.00
807 2 0.00
808 1 0.00
809 1 0.00
810 7 0.00
811 4 0.00
812 3 0.00
813 13 0.00
814 5 0.00
815 13 0.00
816 7 0.00
817 7 0.00
818 6 0.00
819 5 0.00
820 13 0.00
821 3 0.00
822 6 0.00
823 11 0.00
827 1 0.00
829 4 0.00
830 7 0.00
831 5 0.00
832 3 0.00
833 81 0.02
834 7 0.00
836 1 0.00
837 9 0.00
838 11 0.00
839 52 0.01
840 114 0.03
841 420 0.11
842 174 0.04
843 219 0.06
844 139 0.04
845 327 0.08
846 113 0.03
847 6 0.00
848 6 0.00
849 20 0.01
850 5 0.00
852 1 0.00
853 2 0.00
854 4 0.00
855 1 0.00
856 3 0.00
857 2 0.00
858 3 0.00
863 7 0.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (780 bp):
AAAGTAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAAATATTTTCTCTT
TTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGTA
TTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGCCAA
TTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATCAACAAGTACAAGGAC
TATTCTTAAAATTTAAACTAAAATAATATTTGTTTCTTTGATTCTGACACACGGCGTTGTTGATA
TAAAAATTATTTTCTGTTTTATTTTAAAACTGCCATCTTACGCGCGGTTTCAAGTTAAATGCATG
TGACGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCA
AACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAATGAGGGACCAAATCTGCGCAAATAA
AGAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACAC
GCGACGTTTTTAATATAAAAATAATAAATTCTTTTTTATCCTAAACTGCCATCTAACGCGGCCGT
TTCAATATAATTTCATGTGACTGAGCTGCTTGTATTTGGCAGAGAGATTCTTCGTTGATTTCATC
AATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACAAGTAAATAAAAAAGTGGGA
Found at i:17939936 original size:279 final size:279
Alignment explanation
Indices: 17939361--17940987 Score: 1653
Period size: 279 Copynumber: 5.8 Consensus size: 279
17939351 AAAAAGTGGG
* * ** * *
17939361 AAAAGTAAAATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAAAATTTATTTTCTT
1 AAAA-TAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATATAAAAATATATTTTCTT
* *
17939426 TTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTG
65 TTTTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTG
* * *
17939491 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAAGACGCC
130 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-GTTTTTTTCTCAAACTTAAGAGGCC
* *
17939556 AATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGG
194 AATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATAAACAAGTACAAGG
* *
17939621 ACAATTCTTAAAATTTAAACT
259 ACTATTCTTAAAATTTAACCT
* * * * * *
17939642 AAAGTAATA-TTGTTTCTTTGGATTTTGACACGCGGCGTTGTTGATATAAAAATGTATTTTCTGT
1 AAAATAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATATAAAAATATATTTTCTTT
* *
17939706 TTTATTTTAAAACTGTCATCTTACGC-AGCGGTTTCAAGTTAAATGCATGTGA-TGGAGCTGCTT
66 TTTATCTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGACT-GAGCTGCTT
* * * * * *
17939769 GTATTTGGAAGGGAGATTCTTCTTTGATTTCATCTATTTTGTCTTTCTCTCAAACATAAGAGGCC
129 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGAGGCC
* * * * ** *
17939834 AATTTCAATGCTAAGAGTAGATAAAAA-ATGAGGGACCAAATCTGTGCAAATAAAGAAGTACAAG
194 AATTTGAATGCTACGAGTAAATAAAAATA-GAGGGACCAAATCCGCACAAATAAACAAGTACAAG
*
17939898 GACTATTCTTAAAATTTAAGCT
258 GACTATTCTTAAAATTTAACCT
** * ** * * * **
17939920 AAAATAATATTTGTTTCACTCGACTCCAACACGCGACATTTTTAATATAAAAATAATAAATTCTT
1 AAAATAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATATAAAAAT-ATATTTTCTT
* * * * * * *
17939985 TTTTATCCTAAATCTGCCATCTAACGCGACCGTTTCAA-TATAATTTCATGTAACTGAGCTGCTT
65 TTTTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGT-TAAATGCATGTGACTGAGCTGCTT
* * *
17940049 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAACTTTCTTTTTTTTTTCCTCAAAGTTTAGA
129 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA--TT-TTGTTTTTTT-CTCAAACTTAAGA
* * *
17940114 CGCCAATTTGAATGCTACGAGTAAATAAGAATAGTGGGACCAAAT-CGACACAAATAAACAAGTA
190 GGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCG-CACAAATAAACAAGTA
* **
17940178 CAAGGACTATTCTTAAAACTTAGGCT
254 CAAGGACTATTCTTAAAATTTAACCT
* * * *
17940204 AAAATAGTATTTGTTTCTTTGGATTCTGACACGCGGCGTTGTTGATATAAAGAA-ATATTTTCTC
1 AAAATAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATATAAA-AATATATTTTCTT
* * * * * *
17940268 TTTTATTTTGAAACGGCCATCTTACAC-AGCGGTTTCAAGTTAGATGCTTGTGAC-GAAGCTGCT
65 TTTTATCTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGTTAAATGCATGTGACTG-AGCTGCT
* * * * *
17940331 TGTACTTGGTAGGGAGATTCTTCTTTTATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGAGGC
128 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGAGGC
* * * * * * ** *
17940396 CAATTTCAATGCTACGTGTAAATAAAAATCA-AGGGACCAATTCTGCGCAAATCAGGAAGTACTA
193 CAATTTGAATGCTACGAGTAAATAAAAAT-AGAGGGACCAAATCCGCACAAATAAACAAGTACAA
*
17940460 GGACTATTCTTAGAATTTAACCT
257 GGACTATTCTTAAAATTTAACCT
* * * * *
17940483 AAAAAAATATTTTTTTCACTT-GACTCTGACACACGGCGTTTTTTATATAACAAATA-ATTATTT
1 AAAATAATATTTGTTTC-TTTGGACTCTGACACGCGGCGTTTTTGATATAA-AAATATA-T-TTT
* * * * * * * *
17940546 CTTTTTTATCTTAAGACTACTATCTTACGCGACGCTTTTATGATAATTGCATGTGACTGAGCTGC
62 CTTTTTTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGC
* * * * * *
17940611 TTGTATTTGGTATGGTGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAACTTATGAG
127 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTGTTT-TTTTCTCAAACTTAAGAG
* * * * * * * *
17940676 GCCAATTTGATTTCTACAAGTAAATAAAAATTA-ACGGAGCAAATCCGCCCAAATAAATAAGTAA
191 GCCAATTTGAATGCTACGAGTAAATAAAAA-TAGAGGGACCAAATCCGCACAAATAAACAAGTAC
* *
17940740 AAGGACTATTCTTAGAATTAAACCT
255 AAGGACTATTCTTAAAATTTAACCT
** * ** * ** *
17940765 AAAATAATATTTGTTTCACTCGACTCTGACACGCGATGTTTTTAATATAAAAAATAATAAATTCC
1 AAAATAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATAT-AAAAAT-ATATTTTCT
* * * * * * * *
17940830 TTTTTATCCTACAACTGCCATCTAACGCGGCCGTTTCAA-TATAATTTCATGTTACTGAGCTGCT
64 TTTTTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGT-TAAATGCATGTGACTGAGCTGCT
* * * **
17940894 TGTATTTGGCAGAGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTCTCAAAGTTAAGACCC
128 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGAGGC
* *
17940959 CAATTTGAATTCTACAAGTAAATCAAAAA
193 CAATTTGAATGCTACGAGTAAAT-AAAAA
17940988 AGTGGGAAAA
Statistics
Matches: 1100, Mismatches: 211, Indels: 69
0.80 0.15 0.05
Matches are distributed among these distances:
277 1 0.00
278 102 0.09
279 301 0.27
280 108 0.10
281 133 0.12
282 231 0.21
283 95 0.09
284 126 0.11
285 3 0.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (279 bp):
AAAATAATATTTGTTTCTTTGGACTCTGACACGCGGCGTTTTTGATATAAAAATATATTTTCTTT
TTTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACTGAGCTGCTTGT
ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGAGGCCAA
TTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCACAAATAAACAAGTACAAGGAC
TATTCTTAAAATTTAACCT
Found at i:17940494 original size:563 final size:559
Alignment explanation
Indices: 17939421--17940988 Score: 1805
Period size: 563 Copynumber: 2.8 Consensus size: 559
17939411 AAAATTTATT
* * * *
17939421 TTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGT-TAAATGCATGTGATTGAGC
1 TTCTTTTTTATCTT-AAACTGCCATCTTACGCGACCGTTTCAA-TATAATTGCATGTGACTGAGC
*
17939485 TGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTAA
64 TGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTTA
*
17939550 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGT
129 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATAAACAAGT
* * *
17939615 ACAAGGACAATTCTTAAAATTTAAACTAAAGTAATA-TTGTTTCTTTGGATTTTGACACGCGGCG
194 ACAAGGACTATTCTTAAAA-TTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCG
* * * * *
17939679 TTGTTGATATAAAAATGTATTTTCTGTTTTATTTTAAAACTGTCATCTTACGCAGCGGTTTCAAG
258 TTGTTGATATAAAAATATATTTTCTCTTTTATTTTAAAACGGCCATCTTACACAGCGGTTTCAAG
* * *
17939744 TTAAATGCATGTGATGGAGCTGCTTGTATTTGGAAGGGAGATTCTTCTTTGATTTCATCTATTTT
323 TTAAATGCATGTGACGAAGCTGCTTGTACTTGGAAGGGAGATTCTTCTTTGATTTCATCTATTTT
* *
17939809 GTCTTTCTCTCAAACATAAGAGGCCAATTTCAATGCTAAGAGTAGATAAAAAATGAGGGACCAAA
388 GTCTTTCTCTCAAACATAAGAGGCCAATTTCAATGCTAAGAGTAAATAAAAAATAAGGGACCAAA
* * *
17939874 TCTGTGCAAATAAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCAC
453 TCTGCGCAAATAAAGAAGTACAAGGACTATTCTTAAAATTTAACCTAAAAAAATATTTGTTTCAC
*
17939939 TCGACTCCAACACGCGACATTTTTAATATAA-AAATAATAAA
518 TCGACTCCAACACACGACATTTTTAATATAACAAATAATAAA
* * * *
17939980 TTCTTTTTTATCCTAAATCTGCCATCTAACGCGACCGTTTCAATATAATTTCATGTAACTGAGCT
1 TTCTTTTTTATCTTAAA-CTGCCATCTTACGCGACCGTTTCAATATAATTGCATGTGACTGAGCT
*
17940045 GCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAACTTTCTTTTTTTTTTCCTCAAAGTT
65 GCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TCTTTTTTTT-CTCAAAGTT
*
17940110 TAGACGCCAATTTGAATGCTACGAGTAAATAAGAATAGTGGGACCAAAT-CGACACAAATAAACA
127 TAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCG-CACAAATAAACA
** *
17940174 AGTACAAGGACTATTCTTAAAACTTAGGCTAAAATAGTATTTGTTTCTTTGGATTCTGACACGCG
191 AGTACAAGGACTATTCTTAAAA-TTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACGCG
*
17940239 GCGTTGTTGATATAAAGAA-ATATTTTCTCTTTTATTTTGAAACGGCCATCTTACACAGCGGTTT
255 GCGTTGTTGATATAAA-AATATATTTTCTCTTTTATTTTAAAACGGCCATCTTACACAGCGGTTT
* * * *
17940303 CAAGTTAGATGCTTGTGACGAAGCTGCTTGTACTTGGTAGGGAGATTCTTCTTTTATTTCATCTA
319 CAAGTTAAATGCATGTGACGAAGCTGCTTGTACTTGGAAGGGAGATTCTTCTTTGATTTCATCTA
* * * * *
17940368 TTTTGTTTTTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGTGTAAAT-AAAAATCAAGGGA
384 TTTTGTCTTTCTCTCAAACATAAGAGGCCAATTTCAATGCTAAGAGTAAATAAAAAAT-AAGGGA
* * * * * *
17940432 CCAATTCTGCGCAAATCAGGAAGTACTAGGACTATTCTTAGAATTTAACCTAAAAAAATATTTTT
448 CCAAATCTGCGCAAATAAAGAAGTACAAGGACTATTCTTAAAATTTAACCTAAAAAAATATTTGT
* ** * * * * *
17940497 TTCACTTGACTCTGACACACGGCGTTTTTTATATAACAAATAATTAT
513 TTCACTCGACTCCAACACACGACATTTTTAATATAACAAATAATAAA
* * *
17940544 TTCTTTTTTATCTTAAGACTACTATCTTACGCGA-CGCTTT-TATGATAATTGCATGTGACTGAG
1 TTCTTTTTTATCTTAA-ACTGCCATCTTACGCGACCG-TTTCAAT-ATAATTGCATGTGACTGAG
* * * * * * * *
17940607 CTGCTTGTATTTGGTATGGTGATTCTTCGTCGATTTCATCAATATTGTTTGTTTTCTCAAA-CTT
63 CTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTT
* * * * ** * * *
17940671 ATGAGGCCAATTTGATTTCTACAAGTAAATAAAAATTA-ACGGAGCAAATCCGCCCAAATAAATA
128 A-GACGCCAATTTGAATGCTACGAGTAAATAAAAA-TAGTGGGACCAAATCCGCACAAATAAACA
* * ** * *
17940735 AGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGCG
191 AGTACAAGGACTATTCTTAAAATTAAA-CTAAAATAATATTTGTTTCTTTGGATTCTGACACGCG
** * * ** ** * * * * * *
17940800 ATGTTTTTAATATAAAAAATAATAAATTC-CTTTTTATCCTACAACTGCCATCTAACGCGGCCGT
255 GCGTTGTTGATAT-AAAAAT-ATATTTTCTC-TTTTATTTTAAAACGGCCATCTTACACAGCGGT
* * * * * * *
17940864 TTCAA-TATAATTTCATGTTACTG-AGCTGCTTGTATTTGGCAGAGAGATTCTTCGTTGATTTCA
317 TTCAAGT-TAAATGCATGTGAC-GAAGCTGCTTGTACTTGGAAGGGAGATTCTTCTTTGATTTCA
* * * * ** ** * *
17940927 TCAATTTTCTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATTCTACA-AGTAAATCAAAAAA
380 TCTATTTTGTCTTTCTCTCAAACATAAGAGGCCAATTTCAATGCTA-AGAGTAAAT-AAAAAA
17940989 GTGGGAAAAA
Statistics
Matches: 858, Mismatches: 125, Indels: 46
0.83 0.12 0.04
Matches are distributed among these distances:
558 4 0.00
559 91 0.11
560 9 0.01
561 126 0.15
562 123 0.14
563 402 0.47
564 97 0.11
565 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (559 bp):
TTCTTTTTTATCTTAAACTGCCATCTTACGCGACCGTTTCAATATAATTGCATGTGACTGAGCTG
CTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTTTAGA
CGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATAAACAAGTAC
AAGGACTATTCTTAAAATTAAACTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTG
TTGATATAAAAATATATTTTCTCTTTTATTTTAAAACGGCCATCTTACACAGCGGTTTCAAGTTA
AATGCATGTGACGAAGCTGCTTGTACTTGGAAGGGAGATTCTTCTTTGATTTCATCTATTTTGTC
TTTCTCTCAAACATAAGAGGCCAATTTCAATGCTAAGAGTAAATAAAAAATAAGGGACCAAATCT
GCGCAAATAAAGAAGTACAAGGACTATTCTTAAAATTTAACCTAAAAAAATATTTGTTTCACTCG
ACTCCAACACACGACATTTTTAATATAACAAATAATAAA
Found at i:17942115 original size:559 final size:561
Alignment explanation
Indices: 17941069--17945946 Score: 6257
Period size: 559 Copynumber: 8.7 Consensus size: 561
17941059 TTTTATTTTA
* * * * * * **
17941069 AAACTGCCATCTTACACGACGGTTTCAAGT-TAAATGCATGTGATTGAGCTGCTTGTATTTGCCA
1 AAACTGCCATCTAACGCGGCCGTTTCAA-TATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
*
17941133 AGGAGATTCTTCGTTGATTTCATCAA------TTTTTTTTCTCAAAGTTAAGACGCCAATTTGAA
65 GGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAA
* *
17941192 TGCTACGAGTAAATAAAATTTA-CGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
130 TGCTACGAGTAAATAAAA-ATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
* *
17941256 TTAAAATTTAAG------TAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTGATATAAA
194 TTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAA
* * *
17941315 AAAATATTTTCTGTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTG
259 AAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTG
17941380 ACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTTCTCA
324 ACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTG-TTTTTTTCTCA
* * * *
17941445 AGCATAAGAGGCCAATTTCAATGCTATGAGTAAATAAAAAATGAGGGACCAAATTTGCGCAAATC
388 AACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGCAAATC
* * * *
17941510 AAGAAGTACAAGGACTATTCTTAAAATTTAAGGTAAAATAATATTTGTTTCACACAACTCTAACA
453 AAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACA
* *
17941575 TGCGATATTTTTAATATAAAAAATAAT-AATT-TTTTTTATCCT
518 CGCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* * * *
17941617 AAACTGCCATCTAATGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCCTGTATTTGGCAG
1 AAACTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAG
*
17941682 GGAGATTCTTCGTTGATTTCATCAATTTTCGTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAAT
66 GGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAAT
*
17941747 GCTACGAGTAAATAAAAATAGTGGGACCAAATCCACACAAATCAACAAGTACAAGGACTA-TCTT
131 GCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTT
* *
17941811 AAATTTTAAGCTAAAATAATATTTGTCTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAAT
196 AAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAA-
** * * * *
17941876 AAATATTTTCTCTTTTATTTGGAATCTGCCATCTTACGCGGCGATTTTAAGTTAAATGCACGTGA
260 AAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGA
* * * * *
17941941 CGAAGCTGTTTGTATTTGGTATGGAGATTCTTATTTGATTTCATCTATTTTGTTTTTTTCTCAAA
325 CGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAA
* **
17942006 CTTAAGAGGCCAATTTCAATGCTACGAGTATAT-AAAAATCGAGGGACCAAATCTTTGCAAATCA
390 CTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAAT-GAGGGACCAAATCTGCGCAAATCA
* * * *
17942070 AGAAGTACTAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTTGACTCTGACAC
454 AGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACAC
* * * * *
17942135 ACGACGTTCTTGATATAAAAAATAATAAATTCTTTTTTATCTT
519 GCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* * * * *
17942178 AAGACTGCTATCTTATGCGGCAC-TTT-TATGATAATTGCATGTGACTGAGCTGCTTGTTTTTGG
1 AA-ACTGCCATCTAACGCGGC-CGTTTCAAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGG
* * * * * * * * * *
17942241 TAAGGAGATTCTTGGTCGATTTCATCAATATT-GTTTGTTTTCTCAAACTTAAGAGGCTAATATG
63 TAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTG
* * ** * * * * ** *
17942305 AATTCTACAAGTAAATAAAAATAAAGGGAACAAATCCACCCAAAACAGTAAGTAAAAGGACTATT
128 AATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATT
* * * ** * * * * * * *
17942370 CTTAGAATTAAACCTAAAATAATATTTGTTTCACTCGACTCTGACACACGACGTTTTTAAGATAA
193 CTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAA
** * ** * * * ** * * *
17942435 AAATAATAAATTCTATTTTATCCTAAAACTACCATCTAATGCTCCCGTTTCAA-TATAATTTCAT
258 AAA-AATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGT-TAAATGCAT
* * * *
17942499 GTGACTGAGCT-CTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTT
321 GTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATC--TATT-TTGTTTTTT
* ** * * * * * * *
17942563 TCTCAAAGTTAAGACCCCAATTTGAATGCTACAAGTAAATAAAAATTGTGGGACCAAACCCGCAC
383 TCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGC
* * * ** * *
17942628 AAATCAACAAGTACAAGGACTATTCTTAGAATTTAAGCTAAAATAATAATTGTTTCTTTTGATTC
448 AAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTC
* * * * * **
17942693 TGACACGC-AGCGTTCTTGATAT-AAAAAT-AT-ATTTCCTCTTTTATTTTT
513 TGACACGCGA-CATTTTTAATATAAAAAATAATAAATT-CTTTTTTA-TCCT
* * * * * *
17942741 AAACTGCCATCTTACGC-ACTAGTTTCAAGT-TAAATT-CAAGCGATTGAGCTGCTTGTATTTGG
1 AAACTGCCATCTAACGCGGC-CGTTTCAA-TAT-AATTGCATGTGACTGAGCTGCTTGTATTTGG
*
17942803 TAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTG
63 TAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTG
* * *
17942868 AATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTTCAAGGATTATT
128 AATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATT
* * * * *
17942933 CTTAAAATTTAAACTAAAGTAATAGTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAA
193 CTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAA
*
17942998 AAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCTGCGGTTTCAAGTTAAATGCATGT
258 AAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGT
*
17943063 GACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGGATTTCATCTATTTTG-TTTTTTCTCA
323 GACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCA
* * *
17943127 AACTTAAGAGTCCAATTTTAATGCTACGAGT-AATAAAAAATGAGGGACCAAATCTACGCAAATC
388 AACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGCAAATC
* *
17943191 AAGAAGTAGAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCAACTCTGACA
453 AAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACA
* * *
17943256 CGTGATATTTTTAATATAAAAAACAATAAATTCTTTTTTATCCT
518 CGCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* * *
17943300 AAAATTGCCATCTAATGCGGTCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
1 -AAACTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
* *
17943365 GGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATT
65 GGGAGATTCTTCGTTGATTTCATCAATTTTC----TTTTTTTTTCTCAAAGTTAAGACGCCAATT
*
17943430 TGAATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTACAAGGACTA
126 TGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTA
* * * *
17943495 TTCTTAAAATTTAAACTAAAGTAATATTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATAT
191 TTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATAT
* *
17943560 AAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACACTGCGGTTTCAAGTTAAATGCAT
256 AAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCAT
*
17943625 GTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGGATTTCATCTATTTTGTTTTTTTCT
321 GTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCT
* * *
17943690 CAAACTTAAGAGTCCAATTTTAATGCTACGAGT-AATAAAAAATGAGGGACCAAATCTGTGCAAA
386 CAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGCAAA
* *
17943754 TCAAGAAGTACAAGGACAATTCTTAAAATTTAAGCTAAGATAATATTTGTTTCACTCGACTCTGA
451 TCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGA
17943819 CACGCGACATTTTTAATATAAAAAA-AATAAATTCTTTTTTATCCT
516 CACGCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
*
17943864 AAAACTGCCATCTAATGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
1 -AAACTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
* * *
17943929 GGGATATTCTTCGTTGATTTCATCAATTTTC-TTTTTTTTCTCAAAGTAAAGGCGCCAATTTGAA
65 GGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAA
* * *
17943993 TGCTATGAGTAAATAAAAATAGTGCGACCAAATCCGTACAAATCAACAAGTACAAGGACTATTCT
130 TGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCT
* * * *
17944058 TAAAATTTAAACTAAAGTAATATTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAAAA
195 TAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAA
* * *
17944123 AAATATTTTCCCTTTTATTTTAAAACCGCCATCTTACGCTGCGGTTTCAAGTTAAATGCATGTGA
260 AAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGA
*
17944188 CGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGGATTTCATCTATTTTGTTTTTTTCTCAAA
325 CGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAA
* * * *
17944253 CATAAGAGTCCAATTTTAATGCTATGAGT-AATAAAAAATGAGGGACCAAATCTGCGCAAATCAA
390 CTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGCAAATCAA
*
17944317 GAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTTTGACACG
455 GAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACG
* *
17944382 CGACATTTTTTATATAAAAAACAATAAATTCTTTTTTATCCT
520 CGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* *
17944424 AAAACTACCATCTGACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
1 -AAACTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
* *
17944489 GGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGACCCCAATTTGA
65 GGGAGATTCTTCGTTGATTTCATCAATTTTC-TTTTTTTTTCTCAAAGTTAAGACGCCAATTTGA
* * *
17944554 ATGCTATGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACATGTACCAGGACTATTC
129 ATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
* *
17944619 TTAAAATTTAAGCTAAAATAATATTTGTTTTTTTGGGTTCTGACACGCGGCGTTCTTGATATAAA
194 TTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAA
* *
17944684 AAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTTCGCGGCGGTTTCAAGTTAAATGTATGTG
259 AAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTG
*
17944749 ACGGAGCTGCTTGTATTTGGCAGGGAGATTCGTCTTTGATTTCATCTATTTTGTTTTTTTCTCAA
324 ACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAA
17944814 ACTTAAGAGGCCAATTTCAATGCTACGAGTAAAT-AAAAATCGAGGGACCAAATCTGCGCAAATC
389 ACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAAT-GAGGGACCAAATCTGCGCAAATC
* * *
17944878 AAGAAGTACAAGGACTATTCTTAGAATTTAATCTAAAATAATATTTGTTTCACTTGACTCTGACA
453 AAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACA
* * * * * * * *
17944943 CACGGCGTTTTTGATATAACAAATACTAAATTCTTTTTTTTCTT
518 CGCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* * * * * *
17944987 AAGACAGCTATCTTACACGGCGGTTT-TATGATAATTGCATGTGACTGAGCTGCTTGTATTTGGT
1 AA-ACTGCCATCTAACGCGGCCGTTTCAAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGT
* * * * * * *
17945051 AGGGAGATTCTTCGTTGATATCATCAATATT-GTTTGTTTTCTCAAACTTTAGAGGCCAATTTGA
64 AGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGA
* ** * * * * * *
17945115 ATTCTACGAGTAAATAAAAATAAAGGAACCAAATCTC-CCCAAAACAATAAGTAAAAGGAGTATT
129 ATGCTACGAGTAAATAAAAATAGTGGGACCAAATC-CGCACAAATCAACAAGTACAAGGACTATT
** * * * ** * * * ** *
17945179 CTTTGAATTAAACCTAAAATAATATATGTTTCACTCGACTCTGACATGCTACGTT-TTTATTATA
193 CTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGA-TAT-
* ** * ** * * * *
17945243 AAAAATAAAAAATTCTTTTTTATCCTAAAACTGCCATCTAACGCGGCCGTTTCAA-TATAATTTC
256 AAAAA-AATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGT-TAAATGC
** * * *
17945307 ATGTGATTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTCTTTT
319 ATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATC--TATT-TTGTTTT
* * * * *
17945372 TTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGAGTAAAT-AAAAAT-AGTCGGACCAAGTCC
381 TTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAG--GGACCAAATCT
** *
17945435 GTACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCG
444 GCGCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCG
* *
17945500 ATTCTAACACGCGACATTTTTAATAT-AAAAATAATAAATTCTTTTTTATCCT
509 ACTCTGACACGCGACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
* ** * * *
17945552 AAAGCTGTCATCTAACGCGATCGTTTCAATATGATTTCATGTGACTGAGCTGCTTGTATTTGGCA
1 AAA-CTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTA
* * **
17945617 GGGAGATTCTTCATTGATTTCATCAATTTTCTTTTTTTTTTCTCATAGTTAAGATTCCAATTTGA
65 GGGAGATTCTTCGTTGATTTCATCAATTTTC-TTTTTTTTTCTCAAAGTTAAGACGCCAATTTGA
* * * *
17945682 ATGCTACAAGTAAATAAAAATAGTGGGACCAAATCCGTACAAATCAAGAAGTACAAGGATTATTC
129 ATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTC
* * *
17945747 TTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTGTTGATGT-AA
194 TTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAA
* * * *
17945811 AAAATATTTTCTCTTTTATTTTAAAACTACCATCTTACACCGCAGTTTCAAGTTAAATGCATGTG
259 AAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTG
** ** * *
17945876 ATTGAATTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATCTTGTTTTTTTCTCAA
324 ACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAA
17945941 ACTTAA
389 ACTTAA
17945947 AGACTTATTT
Statistics
Matches: 3785, Mismatches: 470, Indels: 137
0.86 0.11 0.03
Matches are distributed among these distances:
547 1 0.00
548 77 0.02
553 15 0.00
554 88 0.02
558 99 0.03
559 664 0.18
560 311 0.08
561 278 0.07
562 626 0.17
563 477 0.13
564 617 0.16
565 264 0.07
566 142 0.04
567 123 0.03
568 3 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (561 bp):
AAACTGCCATCTAACGCGGCCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAG
GGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAAT
GCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTT
AAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAAA
AATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCATGTGAC
GGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGTTTTTTTCTCAAAC
TTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAAATGAGGGACCAAATCTGCGCAAATCAAG
AAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGACACGC
GACATTTTTAATATAAAAAATAATAAATTCTTTTTTATCCT
Found at i:17942944 original size:281 final size:277
Alignment explanation
Indices: 17940995--17945946 Score: 4897
Period size: 281 Copynumber: 17.7 Consensus size: 277
17940985 AAAAGTGGGA
** * * *
17940995 AAAATAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAGAAAATATTTTCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACG-CGCGTTCTTGATATAAAAAAATA-TTTCTCT
* * * * *
17941060 TTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * *
17941125 ATTTGCCAAGGAGATTCTTCGTTGATTTCATCAA-----TTTTTTTTCTCAAAGTTAAGACGCCA
129 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GGCCA
* *
17941185 ATTTGAATGCTACGAGTAAATAAAATTTA-CGGGACCAAATCCGCACAAATCAACAAGTACAAGG
193 ATTTGAATGCTACGAGTAAATAAAA-ATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGG
17941249 ACTATTCTTAAAATTTAAG--
257 ACTATTCTTAAAATTTAAGCT
** * * * *
17941268 ----TAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTGATATAAAAAAATATTTTCTGT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGATATAAAAAAATA-TTTCTCT
* * * * *
17941329 TTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * ** *
17941394 ATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTTTTCTC-AAGCATAAGAGGCC
129 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAG-TTAAG-GGCC
* * * ** * *
17941458 AATTTCAATGCTATGAGTAAATAAAAA-ATGAGGGACCAAATTTGCGCAAATCAAGAAGTACAAG
192 AATTTGAATGCTACGAGTAAATAAAAATA-GTGGGACCAAATCCGCACAAATCAACAAGTACAAG
*
17941522 GACTATTCTTAAAATTTAAGGT
256 GACTATTCTTAAAATTTAAGCT
* * * * * ** * *
17941544 AAAATAATATTTGTTTCACACAACTCTAACATGCGATATTTTTAATATAAAAAATAATAATTT-T
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATAT-AAAAA-AAT-ATTTCT
** * * * *
17941608 -TTTTATCCT-AAACTGCCATCTAATGCGGCCGTTTCAA-TATAATTTCATGTGACTGAGCTGCC
62 CTTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGT-TAAATTCATGTGACTGAGCTGCT
* *
17941670 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCGTTTTTTTTCTCAAAGTTAAGAC
126 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTTTTCTCAAAGTTAAG-G
*
17941735 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCACACAAATCAACAAGTACA
189 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACA
*
17941800 AGGACTA-TCTTAAATTTTAAGCT
254 AGGACTATTCTTAAAATTTAAGCT
* ** *
17941823 AAAATAATATTTGTCTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAATAAATATTTTCTC
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGATATAAAA-AAATA-TTTCTC
** * * * * *
17941888 TTTTATTTGGAATCTGCCATCTTACGCGG-CGATTTTAAGTTAAATGCACGTGAC-GAAGCTGTT
63 TTTTATTTTAAAACTGCCATCTTACGCGGCCG-TTTCAAGTTAAATTCATGTGACTG-AGCTGCT
* * ** * * *
17941951 TGTATTTGGTATGGAGATTCTTATTTGATTTCATCTA-TTTTGTTTTTTTCTCAAACTTAAGAGG
126 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GG
* * * * **** * *
17942015 CCAATTTCAATGCTACGAGTATATAAAAATCGAGGGACCAAATCTTTGCAAATCAAGAAGTACTA
190 CCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAA
* *
17942080 GGACTATTCTTAGAATTTAACCT
255 GGACTATTCTTAAAATTTAAGCT
* * * *
17942103 AAAATAATATTTGTTTCACTTGACTCTGACACACGACGTTCTTGATATAAAAAATAATAAATTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATAT-AAAAA-AAT-ATTTCT
* * * * * * * *
17942168 TTTTTATCTTAAGACTGCTATCTTATGCGGCAC-TTTTATGAT-AATTGCATGTGACTGAGCTGC
62 CTTTTATTTTAAAACTGCCATCTTACGCGGC-CGTTTCAAGTTAAATT-CATGTGACTGAGCTGC
* * * * * * * * *
17942231 TTGTTTTTGGTAAGGAGATTCTTGGTCGATTTCATCAATATTGTTTGTTTTCTCAAACTTAAGAG
125 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-G
* * * * ** * * * * ** *
17942296 GCTAATATGAATTCTACAAGTAAATAAAAATAAAGGGAACAAATCCACCCAAAACAGTAAGTAAA
189 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACA
* * *
17942361 AGGACTATTCTTAGAATTAAACCT
254 AGGACTATTCTTAAAATTTAAGCT
* * * * * * *
17942385 AAAATAATATTTGTTTCACTCGACTCTGACACACGACGTTTTTAAGATAAAAATAATAAATTCTA
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATATAAAAA-AAT-ATTTCTC
** * * * ** *
17942450 TTTTATCCTAAAACTACCATCTAATGCTCCCGTTTCAA-TATAATTTCATGTGACTGAGCT-CTT
63 TTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGT-TAAATTCATGTGACTGAGCTGCTT
*
17942513 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAAGAC
127 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TTTTTTTTTTCTCAAAGTTAAG-G
* * * *
17942578 CCCAATTTGAATGCTACAAGTAAATAAAAATTGTGGGACCAAACCCGCACAAATCAACAAGTACA
189 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACA
*
17942643 AGGACTATTCTTAGAATTTAAGCT
254 AGGACTATTCTTAAAATTTAAGCT
* ** * *
17942667 AAAATAATAATTGTTTCTTTTGATTCTGACACGCAGCGTTCTTGATATAAAAATATATTTCCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGATATAAAAAAATATTT-CTCT
* * * * * *
17942732 TTTATTTTTAAACTGCCATCTTACGC-ACTAGTTTCAAGTTAAATTCAAGCGATTGAGCTGCTTG
64 TTTATTTTAAAACTGCCATCTTACGCGGC-CGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTG
*
17942796 TATTTGGTAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGGCGC
128 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTTTTCTCAAAGTTAAGG-GC
* *
17942861 CAATTTGAATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTTCAAG
191 CAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAG
* *
17942926 GATTATTCTTAAAATTTAAACT
256 GACTATTCTTAAAATTTAAGCT
* * ** * * *
17942948 AAAGTAATAGTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAAAAAAATATTTTCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACG-CGCGTTCTTGATATAAAAAAATA-TTTCTCT
* * * *
17943013 TTTATTTTAAAACTGCCATCTTACGCTGCGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * * *
17943078 ATTTGGCAGGGAGATTCTTC-TTGGATTTCATC--TATTTTGTTTTTTCTCAAACTTAAGAGTCC
129 ATTTGGCAGGGAGATTCTTCGTT-GATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GGCC
* * ** * * *
17943140 AATTTTAATGCTACGAGT-AATAAAAA-ATGAGGGACCAAATCTACGCAAATCAAGAAGTAGAAG
192 AATTTGAATGCTACGAGTAAATAAAAATA-GTGGGACCAAATCCGCACAAATCAACAAGTACAAG
17943203 GACTATTCTTAAAATTTAAGCT
256 GACTATTCTTAAAATTTAAGCT
* * * ** * * *
17943225 AAAATAATATTTGTTTCACTCAACTCTGACACGTGATATTTTTAATATAAAAAACAATAAATTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATAT-AAAAA-AAT-ATTTCT
* ** * * * *
17943290 TTTTTATCCTAAAATTGCCATCTAATGCGGTCGTTTCAA--TATAATTGCATGTGACTGAGCTGC
62 CTTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTA-AATT-CATGTGACTGAGCTGC
* *
17943353 TTGTATTTGGTAGGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTTTTCTCAAAGTT
125 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-----TTTTTTTTTTTTTCTCAAAGTT
*
17943418 AAGGCGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAA
185 AAGG-GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAA
*
17943483 GTACAAGGACTATTCTTAAAATTTAAACT
249 GTACAAGGACTATTCTTAAAATTTAAGCT
* ** * * *
17943512 AAAGTAATATTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAAAAAAATATTTTCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACG-CGCGTTCTTGATATAAAAAAATA-TTTCTCT
* * * * *
17943577 TTTATTTTAAAACTGCCATCTTACACTGCGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * * *
17943642 ATTTGGCAGGGAGATTCTTC-TTGGATTTCATCTA-TTTTGTTTTTTTCTCAAACTTAAGAGTCC
129 ATTTGGCAGGGAGATTCTTCGTT-GATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GGCC
* * * ** *
17943705 AATTTTAATGCTACGAGT-AATAAAAA-ATGAGGGACCAAATCTGTGCAAATCAAGAAGTACAAG
192 AATTTGAATGCTACGAGTAAATAAAAATA-GTGGGACCAAATCCGCACAAATCAACAAGTACAAG
*
17943768 GACAATTCTTAAAATTTAAGCT
256 GACTATTCTTAAAATTTAAGCT
* * * * * * *
17943790 AAGATAATATTTGTTTCACTCGACTCTGACACGCGACATTTTTAATATAAAAAAAATAAATTCTT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATAT-AAAAAAAT-ATTTCTC
** * *
17943855 TTTTATCCTAAAACTGCCATCTAATGCGGCCGTTTCAA--TATAATTGCATGTGACTGAGCTGCT
63 TTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTA-AATT-CATGTGACTGAGCTGCT
* * * *
17943918 TGTATTTGGTAGGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTCTCAAAGTAAAGGCG
126 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAGG-G
* * *
17943983 CCAATTTGAATGCTATGAGTAAATAAAAATAGTGCGACCAAATCCGTACAAATCAACAAGTACAA
190 CCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAA
*
17944048 GGACTATTCTTAAAATTTAAACT
255 GGACTATTCTTAAAATTTAAGCT
* ** * * * *
17944071 AAAGTAATATTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAAAAAAATATTTTCCCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACG-CGCGTTCTTGATATAAAAAAATA-TTTCTCT
* * * * *
17944136 TTTATTTTAAAACCGCCATCTTACGCTGCGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * ** *
17944201 ATTTGGCAGGGAGATTCTTC-TTGGATTTCATCTA-TTTTGTTTTTTTCTCAAACATAAGAGTCC
129 ATTTGGCAGGGAGATTCTTCGTT-GATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GGCC
* * * * * *
17944264 AATTTTAATGCTATGAGT-AATAAAAA-ATGAGGGACCAAATCTGCGCAAATCAAGAAGTACAAG
192 AATTTGAATGCTACGAGTAAATAAAAATA-GTGGGACCAAATCCGCACAAATCAACAAGTACAAG
17944327 GACTATTCTTAAAATTTAAGCT
256 GACTATTCTTAAAATTTAAGCT
* * * *
17944349 AAAATAATATTTGTTTCACTCGACTT-TGACACGCGACATTTTTTATATAAAAAACAATAAATTC
1 AAAATAATATTTGTTTCACTCGA-TTCTGACACGCG-CGTTCTTGATAT-AAAAA-AAT-ATTTC
* ** * *
17944413 TTTTTTATCCTAAAACTACCATCTGACGCGGCCGTTTCAA--TATAATTGCATGTGACTGAGCTG
61 TCTTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTA-AATT-CATGTGACTGAGCTG
* *
17944476 CTTGTATTTGGTAGGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAA
124 CTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TTTTTTTTTTCTCAAAGTTAA
** * *
17944541 GACCCCAATTTGAATGCTATGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACATGT
187 G-GGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGT
*
17944606 ACCAGGACTATTCTTAAAATTTAAGCT
251 ACAAGGACTATTCTTAAAATTTAAGCT
*** * *
17944633 AAAATAATATTTGTTTTTTTGGGTTCTGACACGCGGCGTTCTTGATATAAAAAAATATTTTCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGATATAAAAAAATA-TTTCTCT
* * *
17944698 TTTATTTTAAAACTGCCATCTTTCGCGGCGGTTTCAAGTTAAATGT-ATGTGACGGAGCTGCTTG
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAAT-TCATGTGACTGAGCTGCTTG
* * * * *
17944762 TATTTGGCAGGGAGATTCGTCTTTGATTTCATCTA-TTTTGTTTTTTTCTCAAACTTAAGAGGCC
128 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-GGCC
* * * * * *
17944826 AATTTCAATGCTACGAGTAAATAAAAATCGAGGGACCAAATCTGCGCAAATCAAGAAGTACAAGG
192 AATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGG
* *
17944891 ACTATTCTTAGAATTTAATCT
257 ACTATTCTTAAAATTTAAGCT
* * * * * *
17944912 AAAATAATATTTGTTTCACTTGACTCTGACACACGGCGTTTTTGATATAACAAATACTAAATTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGATATAA-AAA-AAT-ATTTCT
* * * * * * * * *
17944977 -TTTTTTTCTTAAGACAGCTATCTTACACGGCGGTTTTATGAT-AATTGCATGTGACTGAGCTGC
62 CTTTTATT-TTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATT-CATGTGACTGAGCTGC
* * * * * * *
17945040 TTGTATTTGGTAGGGAGATTCTTCGTTGATATCATCAATATTGTTTGTTTTCTCAAACTTTAGAG
125 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAG-G
* ** * * * * *
17945105 GCCAATTTGAATTCTACGAGTAAATAAAAATAAAGGAACCAAATCTC-CCCAAAACAATAAGTAA
189 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATC-CGCACAAATCAACAAGTAC
* ** * *
17945169 AAGGAGTATTCTTTGAATTAAACCT
253 AAGGACTATTCTTAAAATTTAAGCT
* * * * * * *
17945194 AAAATAATATATGTTTCACTCGACTCTGACATGCTACGTT-TTTATTATAAAAAATAAAAAATTC
1 AAAATAATATTTGTTTCACTCGATTCTGACACGC-GCGTTCTTGA-TAT--AAAA-AAATATTTC
* ** * * *
17945258 TTTTTTATCCTAAAACTGCCATCTAACGCGGCCGTTTCAA-TATAATTTCATGTGATTGAGCTGC
61 TCTTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGT-TAAATTCATGTGACTGAGCTGC
*
17945322 TTGTATTTGGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTCTTTTTTTCTCAAAGTTAAG
125 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TT-TTTTTTTCTCAAAGTTAAG
* * * *
17945387 ACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTCGGACCAAGTCCGTACAAATCAACAAGTA
188 -GGCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTA
17945452 CAAGGACTATTCTTAAAATTTAAGCT
252 CAAGGACTATTCTTAAAATTTAAGCT
* * * * * *
17945478 AAAATAATATTTGTTTCACTCGATTCTAACACGCGACATTTTTAATATAAAAATAATAAATTCTT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATATAAAAA-AAT-ATTTCTC
** * * * ** * *
17945543 TTTTATCCTAAAGCTGTCATCTAACGCGATCGTTTCAA-TATGATTTCATGTGACTGAGCTGCTT
63 TTTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGT-TAAATTCATGTGACTGAGCTGCTT
* * *
17945607 GTATTTGGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTTTTTTTTTCTCATAGTTAAGAT
127 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TTTTTTTTTTCTCAAAGTTAAG-G
* * * *
17945672 TCCAATTTGAATGCTACAAGTAAATAAAAATAGTGGGACCAAATCCGTACAAATCAAGAAGTACA
189 GCCAATTTGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACA
*
17945737 AGGATTATTCTTAAAATTTAAGCT
254 AGGACTATTCTTAAAATTTAAGCT
** * * *
17945761 AAAATAATATTTGTTTCTTTGGATTCTGACACGCGACGTTGTTGATGT-AAAAAATATTTTCTCT
1 AAAATAATATTTGTTTCACTCGATTCTGACACGCG-CGTTCTTGATATAAAAAAATA-TTTCTCT
* * * * * * **
17945825 TTTATTTTAAAACTACCATCTTACACCGCAGTTTCAAGTTAAATGCATGTGATTGAATTGCTTGT
64 TTTATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGT
* * * * *
17945890 ATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA-TCTTGTTTTTTTCTCAAACTTAA
129 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAA
17945947 AGACTTATTT
Statistics
Matches: 3889, Mismatches: 644, Indels: 287
0.81 0.13 0.06
Matches are distributed among these distances:
269 146 0.04
272 1 0.00
273 3 0.00
274 91 0.02
276 2 0.00
277 97 0.02
278 265 0.07
279 625 0.16
280 461 0.12
281 781 0.20
282 643 0.17
283 308 0.08
284 232 0.06
285 90 0.02
286 49 0.01
287 93 0.02
288 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (277 bp):
AAAATAATATTTGTTTCACTCGATTCTGACACGCGCGTTCTTGATATAAAAAAATATTTCTCTTT
TATTTTAAAACTGCCATCTTACGCGGCCGTTTCAAGTTAAATTCATGTGACTGAGCTGCTTGTAT
TTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAAGTTAAGGGCCAATT
TGAATGCTACGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACAAGTACAAGGACTA
TTCTTAAAATTTAAGCT
Found at i:17943465 original size:845 final size:838
Alignment explanation
Indices: 17940995--17945935 Score: 5401
Period size: 845 Copynumber: 5.9 Consensus size: 838
17940985 AAAAGTGGGA
* *
17940995 AAAATAATATTTGTTTCTTTGGATTCTGACACGTAGCGTTCTTGATATAAGAAAATATTTTCTCT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCT
* *
17941060 TTTATTTTAAAACTGCCATCTTACACGACGGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
66 TTTATTTTAAAACTGCCATCTTACGCGACAGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
* *
17941125 ATTTGCCAAGGAGATTCTTCGTTGATTTCATCAA----TTTTTTTTCTCAAAGTTAAGACGCCAA
131 ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAA
*
17941186 TTTGAATGCTACGAGTAAATAAAATTTACG-GGACCAAATCCGCACAAATCAACAAGTACAAGGA
196 TTTGAATGCTACGAGTAAATAAAA-ATA-GTGGACCAAATCCGCACAAATCAACAAGTACAAGGA
* *
17941250 CTATTCTTAAAATTTAAG------TAATATTTGTTTCTTTGGATTCTGACACACGGCATTCTTGA
259 CTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACATTCTTGA
** * * * *
17941309 TATAAAAAAATATTTTCTGTTTTATTTTAAAAATGCCATCTTACGCGACGGTTTCAAGTTAAATG
324 TATAAAAAAATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATG
17941374 CATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCTATTTTGATTTTT
389 CATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTC-TTGATTTCATCTATTTTG-TTTTT
* * * * *
17941439 TTCTCAAGCATAAGAGGCCAATTTCAATGCTATGAGTAAATAAAAA-ATGAGGGACCAAATTTGC
452 TTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATA-GAGGGACCAAATCT-C
* * *
17941503 GCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGGTAAAATAATATTTGTTTCACACAAC
515 GCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGAC
* * **
17941568 TCTAACATGCGATATTTTTAATATAAAAAATAAT-AATT-TTTTTTATCCT-AAACTGCCATCTA
580 TCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTA
* *
17941630 ATGCGGCCGTTTCAATATAATTTCATGTGACTGAGCTGCCTGTATTTGGCAGGGAGATTCTTCGT
645 ATGCGG-CGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGT
* *
17941695 TGATTTCATCAATTTTC--GTTTTTTTTCTCAAAGTTAAGACGCCAATTTGAATGCTACGAGTAA
709 TGATTTCATCAATTTTCTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTACGAGTAA
* *
17941758 ATAAAAATAGTGGGACCAAATCCACACAAATCAACAAGTACAAGGACTA-TCTTAAATTTTAAGC
774 ATAAAAATAGT-GGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGC
17941822 T
838 T
* *
17941823 AAAATAATATTTGTCTCTTTGGATTCTGACACGCGGCGTTCTTGATATAAAATAAATATTTTCTC
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAA-AAATATTTTCTC
** * * * * * *
17941888 TTTTATTTGGAATCTGCCATCTTACGCGGC-GATTTTAAGTTAAATGCACGTGA-CGAAGCTGTT
65 TTTTATTTTAAAACTGCCATCTTACGCGACAG-TTTCAAGTTAAATGCATGTGATTG-AGCTGCT
* * ** * * * *
17941951 TGTATTTGGTATGGAGATTCTTATTTGATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGAGGC
128 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGC
* * **** * *
17942016 CAATTTCAATGCTACGAGTATATAAAAATCGAG-GGACCAAATCTTTGCAAATCAAGAAGTACTA
193 CAATTTGAATGCTACGAGTAAATAAAAAT--AGTGGACCAAATCCGCACAAATCAACAAGTACAA
* * * * * *
17942080 GGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCACTT-GACTCTGACACACGACGTTC
256 GGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTC-TTTGGATTCTGACACGCGACATTC
* * * ** * * *
17942144 TTGATATAAAAAATAATAAATTCTTTTTTATCTTAAGACTGCTATCTTATGCGGCACTTTTATGA
320 TTGATAT-AAAAA-AATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGT
* * * * * * * * *
17942209 TAATTGCATGTGACTGAGCTGCTTGTTTTTGGTAAGGAGATTCTTGGTCGATTTCATCAATATTG
383 TAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTT-CTTGATTTCATCTATTTTG
* * * * * *
17942274 TTTGTTTTCTCAAACTTAAGAGGCTAATATGAATTCTACAAGTAAATAAAAATAAAGGGAACAAA
447 TTT-TTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
* * * * * * *
17942339 TCCACCCAAAAC-AGTAAGTAAAAGGACTATTCTTAGAATTAAACCTAAAATAATATTTGTTTCA
511 T-CTCGCAAATCAAG-AAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCA
* * * *
17942403 CTCGACTCTGACACACGACGTTTTTAAGAT-AAAAATAATAAATTCTATTTTATCCTAAAACTAC
574 CTCGACTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGC
** *
17942467 CATCTAATGCTCCCGTTTCAATATAATTTCATGTGACTGAGCT-CTTGTATTTGGCAGGGAGATT
639 CATCTAATGC-GGCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATT
* *
17942531 CTTCGTTGATTTCATCAATTTTC-TTTTTTTTTTCTCAAAGTTAAGACCCCAATTTGAATGCTAC
703 CTTCGTTGATTTCATCAATTTTCTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTAC
* * * *
17942595 AAGTAAATAAAAATTGTGGGACCAAACCCGCACAAATCAACAAGTACAAGGACTATTCTTAGAAT
768 GAGTAAATAAAAATAGT-GGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAAT
17942660 TTAAGCT
832 TTAAGCT
* * * *
17942667 AAAATAATAATTGTTTCTTTTGATTCTGACACGCAGCGTTCTTGATATAAAAATATATTTCCTCT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCT
* * * *
17942732 TTTATTTTTAAACTGCCATCTTACGC-ACTAGTTTCAAGTTAAATTCAAGCGATTGAGCTGCTTG
66 TTTATTTTAAAACTGCCATCTTACGCGAC-AGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTG
* *
17942796 TATTTGGTAGGGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTCTCAAAGTTAAGGCGC
130 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TTTTTTTTTCTCAAAGTTAAGACGC
*
17942861 CAATTTGAATGCTACGAGTAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTTCAAG
193 CAATTTGAATGCTACGAGTAAATAAAAATAGTG-GACCAAATCCGCACAAATCAACAAGTACAAG
* * * * * * * *
17942926 GATTATTCTTAAAATTTAAACTAAAGTAATAGTTGTTTCTTTGGATTTTGACACGTGGCGTTCTT
257 GACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACATTCTT
** * * *
17942991 GATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTACGCTGCGGTTTCAAGTTAAA
322 GATATAAAAAAATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAA
17943056 TGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGGATTTCATCTATTTTG-TTT
387 TGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTT-GATTTCATCTATTTTGTTTT
* *
17943120 TTTCTCAAACTTAAGAGTCCAATTTTAATGCTACGAGT-AATAAAAA-ATGAGGGACCAAATCTA
451 TTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATA-GAGGGACCAAATCT-
* *
17943183 CGCAAATCAAGAAGTAGAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCAA
514 CGCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGA
* ** * *
17943248 CTCTGACACGTGATATTTTTAATATAAAAAACAATAAATTCTTTTTTATCCTAAAATTGCCATCT
579 CTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCT
* *
17943313 AATGCGGTCGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAGGGATATTCTTCG
644 AATGCGG-CGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCG
17943378 TTGATTTCATCAATTTTCTTTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTACGAG
708 TTGATTTCATCAATTTTC--TTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTACGAG
17943443 TAAATAAAAATAGTGCGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTA
771 TAAATAAAAATAGTG-GACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTA
*
17943508 AACT
835 AGCT
* * **
17943512 AAAGTAATATTTGTTTCTTTGGATTTTGACACGTGGCGTTCTTGATATAAAAAAATATTTTCTCT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCT
* * **
17943577 TTTATTTTAAAACTGCCATCTTACACTG-CGGTTTCAAGTTAAATGCATGTGACGGAGCTGCTTG
66 TTTATTTTAAAACTGCCATCTTACGC-GACAGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTG
* * *
17943641 TATTTGGCAGGGAGATTCTTC-TTGGATTTCATCTATTTTGTTTTTTTCTCAAACTTAAGA-GTC
130 TATTTGGCAGGGAGATTCTTCGTT-GATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACG-C
* * ** *
17943704 CAATTTTAATGCTACGAGT-AATAAAAAATGAG-GGACCAAATCTGTGCAAATCAAGAAGTACAA
193 CAATTTGAATGCTACGAGTAAAT-AAAAAT-AGTGGACCAAATCCGCACAAATCAACAAGTACAA
* * ** * * *
17943767 GGACAATTCTTAAAATTTAAGCTAAGATAATATTTGTTTCACTCGACTCTGACACGCGACATTTT
256 GGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACATTCT
* * * * *
17943832 TAATATAAAAAAAATAAATTCTTTTTTATCCTAAAACTGCCATCTAATGCGGCCGTTTCAA-TAT
321 TGATAT-AAAAAAATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGT-T
* * * * * *
17943896 AATTGCATGTGACTGAGCTGCTTGTATTTGGTAGGGATATTCTTCGTTGATTTCATCAATTTTCT
384 AAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTC-TTGATTTCATCTATTTT-G
* * * * *
17943961 TTTTTTTCTCAAAGTAAAG-GCGCCAATTTGAATGCTATGAGTAAATAAAAATAGTGCGACCAAA
447 TTTTTTTCTCAAACTTAAGAG-GCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
* * * *
17944025 TC-CGTACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAACTAAAGTAATATTTGTTTCT
511 TCTCG--CAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCA
* * * * * * * * ** ** ** *
17944089 TTGGATTTTGACACGTGGCGTTCTTGATAT-AAAAA-AATATTTTCCCTTTTATTTTAAAACCGC
574 CTCGACTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGC
* * * * *
17944152 CATCTTACGCTGCGGTTTCAAGT-TAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGAT
639 CATCTAATGCGGC-GTTTCAA-TATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGAT
* * ** * *
17944216 TCTTC-TTGGATTTCATC---TAT-TTTGTTTTTTTCTCAAACATAAGAG-TCCAATTTTAATGC
702 TCTTCGTT-GATTTCATCAATTTTCTTTTTTTTTTTCTCAAAGTTAAG-GCGCCAATTTGAATGC
* * * *
17944275 TATGAGT-AATAAAAAATGAG-GGACCAAATCTGCGCAAATCAAGAAGTACAAGGACTATTCTTA
765 TACGAGTAAAT-AAAAAT-AGTGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTA
17944338 AAATTTAAGCT
828 AAATTTAAGCT
** * * * * **
17944349 AAAATAATATTTGTTTCACTCGACTT-TGACACGC-GACATTTTTTATATAAAAAACAATAAATT
1 AAAATAATATTTGTTTCTTTGGA-TTCTGACACGCAG-CGTTCTTGATAT-AAAAA-AATATTTT
* ** * * * * * *
17944412 CTTTTTTATCCTAAAACTACCATCTGACGCGGCCGTTTCAA-TATAATTGCATGTGACTGAGCTG
62 CTCTTTTATTTTAAAACTGCCATCTTACGCGACAGTTTCAAGT-TAAATGCATGTGATTGAGCTG
* *
17944476 CTTGTATTTGGTAGGGATATTCTTCGTTGATTTCATCAATTTTCTTTTTTTTTTCTCAAAGTTAA
126 CTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA--TT-TTTTTTTTTTCTCAAAGTTAA
* * *
17944541 GACCCCAATTTGAATGCTATGAGTAAATAAAAATAGTGGGACCAAATCCGCACAAATCAACATGT
188 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGT-GGACCAAATCCGCACAAATCAACAAGT
* * * * *
17944606 ACCAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTTTTTGGGTTCTGACACGCGGCG
252 ACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACA
** * * *
17944671 TTCTTGATATAAAAAAATATTTTCTCTTTTATTTTAAAACTGCCATCTTTCGCGGCGGTTTCAAG
317 TTCTTGATATAAAAAAATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAG
* *
17944736 TTAAATGTATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCGTCTTTGATTTCATCTATTTT
382 TTAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTC-TTGATTTCATCTATTTT
* *
17944801 GTTTTTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAATCGAGGGACCAAA
446 GTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
* *
17944866 TCTGCGCAAATCAAGAAGTACAAGGACTATTCTTAGAATTTAATCTAAAATAATATTTGTTTCAC
511 TCT-CGCAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCAC
* * * * * * * * * * *
17944931 TTGACTCTGACACACGGCGTTTTTGATATAACAAATACTAAATTCTTTTTTTTCTTAAGACAGCT
575 TCGACTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCC
* ** * *
17944996 ATCTTACACGGCGGTTT-TATGATAATTGCATGTGACTGAGCTGCTTGTATTTGGTAGGGAGATT
640 ATCTAATGCGGC-GTTTCAAT-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATT
* * * * * * *
17945060 CTTCGTTGATATCATCAA---TATTGTTTGTTTTCTCAAACTTTAGAG-GCCAATTTGAATTCTA
703 CTTCGTTGATTTCATCAATTTTCTTTTTTTTTTTCTCAAAGTTAAG-GCGCCAATTTGAATGCTA
** * * * * * **
17945121 CGAGTAAATAAAAATAAAGGAACCAAATCTC-CCCAAAACAATAAGTAAAAGGAGTATTCTTTGA
767 CGAGTAAATAAAAATAGTGG-ACCAAATC-CGCACAAATCAACAAGTACAAGGACTATTCTTAAA
* *
17945185 ATTAAACCT
830 ATTTAAGCT
* ** * * * * * **
17945194 AAAATAATATATGTTTCACTCGACTCTGACATGCTA-CGTT-TTTATTATAAAAAATAAAAAATT
1 AAAATAATATTTGTTTCTTTGGATTCTGACACGC-AGCGTTCTTGA-TAT-AAAAA-AATATTTT
* ** * * * * *
17945257 CTTTTTTATCCTAAAACTGCCATCTAACGCGGCCGTTTCAA-TATAATTTCATGTGATTGAGCTG
62 CTCTTTTATTTTAAAACTGCCATCTTACGCGACAGTTTCAAGT-TAAATGCATGTGATTGAGCTG
*
17945321 CTTGTATTTGGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTCTTTTTTTCTCAAAGTTAA
126 CTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAA-TTT-TT-TTTTTTTCTCAAAGTTAA
* *
17945386 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGTCGGACCAAGTCCGTACAAATCAACAAGT
188 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGT-GGACCAAATCCGCACAAATCAACAAGT
** * *
17945451 ACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGATTCTAACACGCGACA
252 ACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACA
* * * * * * *
17945516 TTTTTAATATAAAAATAATAAATTCTTTTTTATCCTAAAGCTGTCATCTAACGCGATC-GTTTCA
317 TTCTTGATATAAAAA-AATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCG-GCGGTTTCA
* * * *
17945580 A-TATGATTTCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCATTGATTTCATCAAT
380 AGT-TAAATGCATGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTC-TTGATTTCATC--T
* * * * ** * *
17945644 TTTCTTTTTTTTTTCTCATAGTTAAGATTCCAATTTGAATGCTACAAGTAAATAAAAATAGTGGG
441 ATT-TTGTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGG
*
17945709 ACCAAATC-CGTACAAATCAAGAAGTACAAGGATTATTCTTAAAATTTAAGCTAAAATAATATTT
505 ACCAAATCTCG--CAAATCAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTT
** * * * * * * * **
17945773 GTTTCTTTGGATTCTGACACGCGACGTTGTTGATGTAAAAAAT-AT--TTTCTCTTTTATTTTAA
568 GTTTCACTCGACTCTGACACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAA
* * ** * * * **
17945835 AACTACCATCTTACACCGCAGTTTCAAGT-TAAATGCATGTGATTGAATTGCTTGTATTTGGCAG
633 AACTGCCATCTAATGCGGC-GTTTCAA-TATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAG
* * * *
17945899 GGAGATTCTTCTTTGATTTCATCGATCTTGTTTTTTT
696 GGAGATTCTTCGTTGATTTCATCAATTTTCTTTTTTT
17945936 CTCAAACTTA
Statistics
Matches: 3473, Mismatches: 521, Indels: 217
0.82 0.12 0.05
Matches are distributed among these distances:
828 50 0.01
829 93 0.03
832 1 0.00
833 91 0.03
834 1 0.00
836 1 0.00
837 87 0.03
838 54 0.02
839 132 0.04
840 116 0.03
841 462 0.13
842 337 0.10
843 646 0.19
844 232 0.07
845 747 0.22
846 264 0.08
847 5 0.00
848 5 0.00
849 149 0.04
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (838 bp):
AAAATAATATTTGTTTCTTTGGATTCTGACACGCAGCGTTCTTGATATAAAAAAATATTTTCTCT
TTTATTTTAAAACTGCCATCTTACGCGACAGTTTCAAGTTAAATGCATGTGATTGAGCTGCTTGT
ATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTCTCAAAGTTAAGACGCCAA
TTTGAATGCTACGAGTAAATAAAAATAGTGGACCAAATCCGCACAAATCAACAAGTACAAGGACT
ATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCTTTGGATTCTGACACGCGACATTCTTGATA
TAAAAAAATAAATTCTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGTTAAATGCA
TGTGACGGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTGATTTCATCTATTTTGTTTTTTTCT
CAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCTCGCAAAT
CAAGAAGTACAAGGACTATTCTTAAAATTTAAGCTAAAATAATATTTGTTTCACTCGACTCTGAC
ACGCGACGTTTTTAATATAAAAAATAATAAATTCTTTTTTATCCTAAAACTGCCATCTAATGCGG
CGTTTCAATATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTC
ATCAATTTTCTTTTTTTTTTTCTCAAAGTTAAGGCGCCAATTTGAATGCTACGAGTAAATAAAAA
TAGTGGACCAAATCCGCACAAATCAACAAGTACAAGGACTATTCTTAAAATTTAAGCT
Found at i:17946854 original size:276 final size:272
Alignment explanation
Indices: 17946412--17947756 Score: 1294
Period size: 276 Copynumber: 4.9 Consensus size: 272
17946402 TCAATAAAGT
* * * *
17946412 GAATTTAACCTAAGATAATATTTCTTTCACTCGACTCTTACA-GCGGCGTTCTTGATATAAATAA
1 GAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGC-ACGTT-TTGATAT--A-AA
* *
17946476 TAATAATTTTATTTTTATTTTAAAATTGCCATCTTACGC-GACTGTTTCAAGATAATTACATGTG
61 -AA-AA-TTTCTTTTTATTTTAAAACTGCCATCTTACGCTGA--GTTTCAAGATAATTACATGTG
* * *
17946540 ACGGAGCTGCTTGTATTTCGCAGGGAGATTCATCTTTGATTTCTTCGATTTTATTTTTTTCTCAA
121 ACTGAGCTGCTTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTATTTTTTTCTCAA
* * * * * * * * *
17946605 ACATAAGACCCCAATTTGTATGCTACGAGTAAATAAAAATATATGGACTAGATCCCCGTAAATCA
186 ACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAAGGACCAAATCCACGCAAATCA
17946670 ATAAATACAAGGACTATTCTTA
251 ATAAATACAAGGACTATTCTTA
* * *
17946692 TAATTTAACCTAAAATAATATTTGTTTCCCTCGACTCTGACACTCACCGTTCTTGATATAAAAAA
1 GAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGCA-CGTT-TTGATATAAAAAA
* * *
17946757 ATTTCCTTTTTATTTTAAAACTGACATCTAACGCTGCAGTTTCAAGATAATTGCATGTGACTGAG
64 ATTT-CTTTTTATTTTAAAACTGCCATCTTACGCTG-AGTTTCAAGATAATTACATGTGACTGAG
* * * * *
17946822 CTTCTTGTATTTGGCAAGGAGAATCTTCTTTGATTTCATCGATTTTATTTTATTTTTCTCAAAGT
127 CTGCTTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTA--TT-TTTTTCTCAAACT
* * * *
17946887 TAAGAGGCCAATTTGAATGCTACGTGTAAATAAAAATAGAAGGACCAAATCCGCTCAAATCAATA
189 TAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAAGGACCAAATCCACGCAAATCAATA
*
17946952 AATACAAAGACTATTCTTA
254 AATACAAGGACTATTCTTA
* * * *
17946971 GAATTTAGCCTAAAATAATATTTGTTTC-TTACGACTCTGACACGAGATGTTTTGATATAAAAAA
1 GAATTTAACCTAAAATAATATTTGTTTCACT-CGACTCTGACACG-CACGTTTTGATATAAAAAA
** * * * *
17947035 ATTTCTTTTCTATTTTAAAGTTTCCATCTTATG-TG-GTGGTTAAAAGATAATTGCATGTGACTG
64 ATTTCTTTT-TATTTTAAAACTGCCATCTTACGCTGAGT--TT-CAAGATAATTACATGTGACTG
* * * *
17947098 AGCTGCTTGTATTTAGCCGGGAGAATCTTCTTTGATTTCATCGATTTTATTTTTTT-TTAAACTT
125 AGCTGCTTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTATTTTTTTCTCAAACTT
* * * *
17947162 AAGACGCTAATTCGAATGCT---A-TGAATAAAATATAGAGGGACCAAATCCACGCAAATCAATA
190 AAGACGCCAATTTGAATGCTACGAGTAAATAAAA-ATAGAAGGACCAAATCCACGCAAATCAATA
* *
17947223 AGTACAAGGACTACTCTTA
254 AATACAAGGACTATTCTTA
* * * *
17947242 AAATTTAAACTAAAATAATGTTTG-TT---TC-ACT-TGACTCG-A-----T-ATA-AAAAATAA
1 GAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGCACGTTTTGATATAAAAA-AA
** * * * * *
17947293 TATT-TTTTTACCTTAAAACTACCATCTTAAACGATG-GTTTCAAGATAATTACAAGTAACTAAG
65 T-TTCTTTTTATTTTAAAACTGCCATCTT--ACGCTGAGTTTCAAGATAATTACATGTGACTGAG
* * * * ** * * *
17947356 CTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTAATCAAACTCATTTTTTACTTAAACTTAA
127 CTGCTTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTATTTTTTTCTCAAACTTAA
* * * * * *
17947421 GACGTCAATTTGAATGCTACGAGTAAATTAAAATAGAAGAACCAAATTCATGCAAATCAATAAGT
192 GACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAAGGACCAAATCCACGCAAATCAATAAAT
* *
17947486 ACGAGGACTATTCGTA
257 ACAAGGACTATTCTTA
* *
17947502 GAATTTAACCTAAAATAATATTTGTTTCACTCGACTATGACACGCGACGCTATTGATATTAAAAA
1 GAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGC-ACG-TTTTGATA-TAAAAA
* * *
17947567 ATATTTTCCTTTTGTATTTTAAAACTGCCATATTATGC-GACGATTTCAAGGTAATTACATGTGA
63 A-A-TTT-CTTTT-TATTTTAAAACTGCCATCTTACGCTGA-G-TTTCAAGATAATTACATGTGA
* *
17947631 CTGAGCTGCTTGTATTTCGCAGGTAGATTCTTCTTTGATTTCAT--A-ATT-TTTTTTTCTCAAA
122 CTGAGCTGCTTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTATTTTTTTCTCAAA
* * * * *
17947692 CTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAATAGAGGGACCAAATTCGCGCAAATCAA
187 CTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAAGGACCAAATCCACGCAAATCAA
17947757 GAAGTACTAT
Statistics
Matches: 884, Mismatches: 131, Indels: 104
0.79 0.12 0.09
Matches are distributed among these distances:
256 82 0.09
257 37 0.04
258 5 0.01
259 4 0.00
260 64 0.07
261 9 0.01
263 1 0.00
264 2 0.00
265 9 0.01
266 9 0.01
267 1 0.00
268 2 0.00
270 10 0.01
271 63 0.07
274 24 0.03
275 13 0.01
276 164 0.19
277 22 0.02
278 109 0.12
279 130 0.15
280 111 0.13
281 13 0.01
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (272 bp):
GAATTTAACCTAAAATAATATTTGTTTCACTCGACTCTGACACGCACGTTTTGATATAAAAAAAT
TTCTTTTTATTTTAAAACTGCCATCTTACGCTGAGTTTCAAGATAATTACATGTGACTGAGCTGC
TTGTATTTCGCAGGGAGATTCTTCTTTGATTTCATCGATTTTATTTTTTTCTCAAACTTAAGACG
CCAATTTGAATGCTACGAGTAAATAAAAATAGAAGGACCAAATCCACGCAAATCAATAAATACAA
GGACTATTCTTA
Found at i:17947950 original size:531 final size:525
Alignment explanation
Indices: 17946795--17947985 Score: 1274
Period size: 531 Copynumber: 2.2 Consensus size: 525
17946785 TAACGCTGCA
* * * * *
17946795 GTTTCAAGATAATTGCATGTGACTGAGCTTCTTGTATTTGGCAAGGAGAATCTTCTTTGATTTCA
1 GTTTCAAGATAATTGCATGTGACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCA
* * * * * *
17946860 TCGATTTTATTTTATTTTTCTCAAAGTTAAGAGGCCAATTTGAATGCTACGTGTAAATAAAAATA
66 TC-A--ATACTCT-TTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATA
* * * *
17946925 GAAGGACCAAATCCGCTCAAATCAATAAATACAAAGACTATTCTTAGAATTTAGCCTAAAATAAT
127 GAAGAACCAAATCCGATCAAATCAATAAATACAAAGACTATTCGTAGAATTTAACCTAAAATAAT
* * * * *
17946990 ATTTGTTTCTTACGACTCTGACACGAGATGTTTTGATATAAAAAAATTTCTTTTCTATTTTAAAG
192 ATTTGTTTCCTACGACTATGACACGAGACGTATTGATATAAAAAAATTTCTTTTCTATTTTAAAA
* * * * ** * * *
17947055 TTTCCATCTTATGTGGTGGTTAAAAGATAATTGCATGTGACTGAGCTGCTTGTATTTAGCCGGGA
257 CTGCCATATTATGCGACGATTAAAAGATAATTACATGTGACTGAGCTGCTTGTATTTAGCAGGGA
* * * * *
17947120 GAATCTTCTTTGATTTCATCGATTTTATTTTTTTTTAAACTTAAGACGCTAATTCGAATGCTATG
322 GAATCTTCTTTGATTTCATC-AATTTATTTTTTCTCAAACTTAAGACGCCAATTCGAATGCTATA
17947185 AATAAAATATAGAGGGACCAAATCCACGCAAATCAATAAGTACAAGGACTACTCTTAAAATTTAA
386 AATAAAATATAGAGGGACCAAATCCACGCAAATC-A-AAG-A-AAGGACTACTCTTAAAATTTAA
*** * *
17947250 ACTAAAATAATGTTTGTTTCACTTGACTCGATATAAAAAATAATATTTTTTTACCTTAAAACTAC
447 ACTAAAATAATGACAGTGTCACTGGACTCGATATAAAAAATAATATTTTTTTACCTTAAAACTAC
17947315 CATCTTAAACGATG
512 CATCTTAAACGATG
* * * *
17947329 GTTTCAAGATAATTACAAGTAACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTAA
1 GTTTCAAGATAATTGCATGTGACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCA
* * *
17947394 TCAA-ACTCATTTTTTACTTAAACTTAAGACGTCAATTTGAATGCTACGAGTAAATTAAAATAGA
66 TCAATACTC-TTTTTT-CTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGA
* * * *
17947458 AGAACCAAATTC-ATGCAAATCAATAAGTACGAGGACTATTCGTAGAATTTAACCTAAAATAATA
129 AGAACCAAATCCGAT-CAAATCAATAAATACAAAGACTATTCGTAGAATTTAACCTAAAATAATA
* *
17947522 TTTGTTTCACT-CGACTATGACACGCGACGCTATTGATATTAAAAAATATTTTCCTTTTGTATTT
193 TTTGTTTC-CTACGACTATGACACGAGACG-TATTGATA-TAAAAAA-A-TTT-CTTTTCTATTT
** * *
17947586 TAAAACTGCCATATTATGCGACGATTTCAAGGTAATTACATGTGACTGAGCTGCTTGTATTTCGC
252 TAAAACTGCCATATTATGCGACGATTAAAAGATAATTACATGTGACTGAGCTGCTTGTATTTAGC
* * *
17947651 AGGTAGATTCTTCTTTGATTTCAT-AATTT-TTTTTTCTCAAACTTAAGAGGCCAATTTC-AATG
317 AGGGAGAATCTTCTTTGATTTCATCAATTTATTTTTTCTCAAACTTAAGACGCCAA-TTCGAATG
* * * *
17947713 CTACGAGTAAATAAAA-ATAGAGGGACCAAATTCGCGCAAATC-AAG-AAGTACTATTCTTAATA
381 CT---A-TAAATAAAATATAGAGGGACCAAATCCACGCAAATCAAAGAAAGGACTACTCTTAA-A
* ** * * * ** * * * *
17947775 TTTGTTTCACTCAACT-CTGACAG-GTGGC-GGTCTGGATATAATAAATAATAAATTATTTTTAT
441 -AT-TTAAACTAAAATAATGACAGTGTCACTGGACTCGATATAAAAAATAAT--ATT-TTTTTAC
* * **
17947837 CTTAAGACTGCCATCTTACGCGATG
501 CTTAAAACTACCATCTTAAACGATG
* *
17947862 GTTTCAAGATAATTGCATGTGACTAAGCTGCTTGTATTTGGTAGGGAGATTCTTCGTCGATTTCA
1 GTTTCAAGATAATTGCATGTGACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCA
* * *
17947927 TCAATA-TCTTTTTTCTCAAACTTAAGTCACCAATTTGAATGCTACGAGTAACTAAAAAT
66 TCAATACTCTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAAT
17947986 TGTTAGACTT
Statistics
Matches: 545, Mismatches: 91, Indels: 45
0.80 0.13 0.07
Matches are distributed among these distances:
530 38 0.07
531 162 0.30
532 21 0.04
533 138 0.25
534 67 0.12
535 3 0.01
536 108 0.20
537 8 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (525 bp):
GTTTCAAGATAATTGCATGTGACTAAGCTGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCA
TCAATACTCTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAAG
AACCAAATCCGATCAAATCAATAAATACAAAGACTATTCGTAGAATTTAACCTAAAATAATATTT
GTTTCCTACGACTATGACACGAGACGTATTGATATAAAAAAATTTCTTTTCTATTTTAAAACTGC
CATATTATGCGACGATTAAAAGATAATTACATGTGACTGAGCTGCTTGTATTTAGCAGGGAGAAT
CTTCTTTGATTTCATCAATTTATTTTTTCTCAAACTTAAGACGCCAATTCGAATGCTATAAATAA
AATATAGAGGGACCAAATCCACGCAAATCAAAGAAAGGACTACTCTTAAAATTTAAACTAAAATA
ATGACAGTGTCACTGGACTCGATATAAAAAATAATATTTTTTTACCTTAAAACTACCATCTTAAA
CGATG
Found at i:17954550 original size:279 final size:276
Alignment explanation
Indices: 17952767--17966089 Score: 9293
Period size: 278 Copynumber: 47.6 Consensus size: 276
17952757 AGTTTTAACA
* *
17952767 AAAAATAGAGGGACCAAATCCGCCCAAATCAATAAGTAAAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17952832 AAATAATATTTGTTTCACTCCACTCTGACATGTGCCGTCCTTAATATAAAAAAATAATAA-TTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAAATAATAATTTTT
* * * * *
17952896 TTTAATCTTAAAACTGCTATCTAAAGCGACGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * *
17952961 TATTTCGCAGGAAGATTCTTCGTTGATTTCATCAAATTTCTTTTTTTTTTCTCAAACTTAAGACG
195 TATTTGGCAGG-AGATTCTTCTTTGATTTCATCAAA------TTTTTTTTCTCAAACTTAAGAGG
* * *
17953026 CCAATTTGAAAGCCACGAATAAAT
253 CCAATTTGAATGCTACGAGTAAAT
* * * * * * *
17953050 AAAAATAGAGGGATCAAATCCGTGAAAATCTAA-AAATTCAAGGACTACTCTTAGAATTTAACCA
1 AAAAATAGAGGGACCAAATCCGCGCAAATC-AATAAGTACAAGGACTATTCTTAGAATTTAACCT
** ** * * *
17953114 AAAATAATATTTGTTTCTTTTAACTCTAAAACGCAACATTCTTGATAT-AAAAA-AAT-ATTTCT
65 AAAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTT-T
* * * * * * * * * *
17953176 TTTCTATTTTAAATCTACCATCTTACGTGACGGCTTCAAGATAAATCCATCTGACTGAGCTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
*
17953241 GTATTTGGCGAGGAGATTCTTCTTTGATTTCATC-AATTTTTTTTCTCAAACTTAAGATGCCAAT
194 GTATTTGGC-AGGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCCAAT
*
17953305 TTGAATGCTACGAATAAAT
258 TTGAATGCTACGAGTAAAT
** * * * *
17953324 GCAGATA-AGGGACCAAATCCGTGCAAATCTATAAGTACAAGTACTATTCTTAGAATTT-ACACT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAAC-CT
* * * * *
17953387 AAAATAATATTTGTTTCACGCGACAT-TAACACGAGGCGTTCTTAATGTAAAAAATAATAAATTG
65 AAAATAATATTTGTTTCACTCGAC-TCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT-
* * *** * * *
17953451 TTTTTTTATCTTAAAACTGCAATCTTAAGCTATGGTTTCAAGATAGTTACATGTGACTGAGCTTC
127 TTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* *
17953516 TTGTATTTGACAGGATGATTCTT-TGTTGATTTCATCAATTTTGCATTTTTCTCAAACTTAAGAG
192 TTGTATTTGGCAGGA-GATTCTTCT-TTGATTTCATCAAATTT---TTTTTCTCAAACTTAAGAG
*
17953580 GCCAACTTGAATGCTACGAGTAAA-
252 GCCAATTTGAATGCTACGAGTAAAT
* * * ** * *
17953604 AAAAATAGGGGGACCAATTCCGAC-CAGATCAATTTGTTCAAGGACAATTCTTAGAATTTAACCT
1 AAAAATAGAGGGACCAAATCCG-CGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCT
* * * * * *
17953668 AAAATTATATATGTTTCACTCGACAT-TGACGCGCTG-CGTTCTTAATATAAAAAAATAATAA-A
65 AAAATAATATTTGTTTCACTCGAC-TCTAACACGC-GACGTTCTTGATAT-AAAAAATAATAATT
* * * * * *
17953730 TTTTTTTATCTTAAAACTGCTATCTAACGAGGTGGTTTCAAGATAGTTGCATGTGACTGAGATGC
127 TTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* * * *
17953795 TTGTATTTAGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTTTTTTATTCTCAAAC-T-GG
192 TTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA-----ATTTTTT-TTCTCAAACTTAAG
*
17953858 AGGTACCAATTTGAAAGCTACGAGTAAA-
250 AGG--CCAATTTGAATGCTACGAGTAAAT
* * * ** * * * * * *
17953886 AAAAATAAAGGTATCAAATCCATGCAAATCTATAAATTCAAGGACTACTCTTAGAATATAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
** * * * * *
17953951 AAATAATATTTGTTTCTTTCAACTCTAACAAGCAACATTATTGATATAAAAAA-AAT-ATTTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTT-TT
* * * * * * ** * *
17954014 TTCTATTTTAAAACTGTCATATTACACGACGGTTTCAAGATAATTGCATGCAACTGACCTACTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * * * ** *
17954079 TATTTGGCAGGGAGATTCTTCTTTGATTTCATC-CA-TTATTTTCTCCAACGTAAAGACACCAAC
195 TATTTGGCA-GGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAAC-TTAAGAGGCCAAT
**
17954142 AAGAATGCTACGAGTAAAT
258 TTGAATGCTACGAGTAAAT
* * ** *
17954161 AAAAATATAGGG-TCAAATCCATGCAAATCAATAAGTACAAGGACTATTCTTAAAATTTAA-CTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCT-
* * *
17954224 AAAAATAATATTTGTTTAACTCGACTCTAACACGCTATGTTCTTGATATAAAATAATAATAATTT
65 -AAAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAA-AATAATAATTT
* * * * * * * * *
17954289 CTTTTTTATTTTAAAATTGTCGTCTTACGCGGCGGTTTCAATATAATTGCGTGTTACTAAGATGC
128 -TTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* *
17954354 TCT-TATTTGGCTAGGAGATTCTTCTTTGACTTCATCAAAATTTTTTTCTCAAACTTAAGAGGCC
192 T-TGTATTTGGC-AGGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCC
*
17954418 AATTTGAATGCTACAAGTAAAT
255 AATTTGAATGCTACGAGTAAAT
* ** * * *
17954440 AAAAATAGAGGTACCAAATTAGCGAAAATAAATAAGTACAAGGACTATTCTTAGAATTTAACTTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * *
17954505 AAATAATATTTGTTTCACTCGACTCTAATACACGACATTCTTGATAT-AAAAATAATAATTTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAA--T-TT
** *
17954569 TTTTTTATCTTAAAAC-GACCATAC-TACATGGCGG-TTCAAGATATTTGCATGTGACTGAGCTG
128 TTTTTTATCTTAAAACTG-CCAT-CTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTG
* * *
17954631 CTTGTATTTGGAAGGGAGATTCTTCGTTGATTTCATCAATTTTAATTTTTTTCTCAAACTTAAGA
191 CTTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA----ATTTTTTTTCTCAAACTTAAGA
** * *
17954696 CACCGATTTGAATACTACGAGTAAAT
251 GGCCAATTTGAATGCTACGAGTAAAT
* * ** * ** *
17954722 AAAAATAGAGGTATCAAATTTGTGCAAATCAATAAGTAGGAGGACCATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * ** *
17954787 AAATAATATTTGATTCTA-TCGACCCTAACACTTGACATTCTTGATATAAACAAAT-AT--TTTC
66 AAATAATATTTGTTTC-ACTCGACTCTAACACGCGACGTTCTTGATATAAA-AAATAATAATTT-
* * * * * * * *
17954848 ATTTTTATTTTAAAGCTGCCGTCTTACTCGGTGGTTTCAAGATAATTGCATGTGACTAAGCTTCT
128 TTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * **
17954913 TGTATTTGGCTAGGAGATTCTTCTTTGATTTCATCGATATTATTTTTTCAACAAACTTAAGACCC
193 TGTATTTGGC-AGGAGATTCTTCTTTGATTTCATC-AAATT-TTTTTTC-TCAAACTTAAGAGGC
**
17954978 CAATTTGAATGCTAC-AAAAATAT
254 CAATTTGAATGCTACGAGTAA-AT
* * * * * **
17955001 AAAAATAAAGGGACCAAATCCTCACAAATCAATAAGTACAACGATTGCTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * *
17955066 AAATAATATTTGCTTCACTCGACTCTGACATGCTG-CATTCTTGATATAAAAAATAGTAA--TTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGC-GACGTTCTTGATATAAAAAATAATAATTTTT
* * * * * * * *
17955128 TTTTACCTTAAAACTGTCATCTTAGGTGGTGGTTTCAAGATAATTACTTGTGACT-AGGCTACTT
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGA-GCTGCTT
* * *
17955192 GTATTTGGTAGGGAGATTCTTCATTGATTTCATCAATTTTGTTTTTCTCTCAAACTTAAGAGGCC
194 GTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA-ATT-TTTTT-TCTCAAACTTAAGAGGCC
*
17955257 AATTTGAATGCTAAGAGTAAAT
255 AATTTGAATGCTACGAGTAAAT
* * * * * *
17955279 AAAAATAAAGGGACAAAATCCGTGCAAATCTATAAGTACAAGGACTATTCTAAAAATTTTAA-CT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAA-TTTAACCT
* * * * * *
17955343 AAAATAATATTTGTTTCACTCGACACTGACACGAGGCGTTCTTGATATAAAAAATAATAAATTGT
65 AAAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTTTT
* * * * * * * *
17955408 TTTTATCTTAAAACTGCAATCTTAAGTGGTGGTTTCAAGATAGTTACATGTGAGTGAGCTTCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * * * **
17955473 TAGTTGGCAAGAAGATTCTTCATTGATTTCATTATTTTTTCTTTTTTCTCAAACTTAAGAGGCCA
195 TATTTGGC-AGGAGATTCTTCTTTGATTTCATCA--AATT-TTTTTTCTCAAACTTAAGAGGCCA
* *
17955538 ACTTGCATGCTACGAGTAAAT
256 ATTTGAATGCTACGAGTAAAT
* * * * *
17955559 AAAAATACAGGGACCAAATCCGCGCAAAACAATATGTACAAGGACTATTCCTAAAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * ** * * * *
17955624 AAATTATATTTGTTTCACTTGAAACTGACATGCGATGTTCTTGATATAAAAAGTAATAAATTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT-TT
* * * * * *
17955689 TTTTTAATCTTAAAATTGCCATATTATGCTGCGATTTCAAGATAATTGCATGTGACTGACCTGCT
129 TTTTT-ATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * *
17955754 TGTATTTGGCAGGGAGAATGTTCTTTGATTTCATC--GTTTTTTTTCTCAAACTTAAAGACGCCA
193 TGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTT-AAGAGGCCA
* *
17955817 ATTAGAATGTTACGAGTAAAT
256 ATTTGAATGCTACGAGTAAAT
* *
17955838 AAAAATATAGGGACCAAATCCGCGCAAATCAAAAAGTACAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * *
17955903 AAATAATATTTGTTTCAATCGACTCTGACACGCAAGGTTCTTGATATAAAATAATAATAA--TTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAA-AATAATAATTTTT
* * * * * * * * * **
17955966 TTTTATTTTAAAACTGCCTTCTTAAGCGGCAGATTCAATATAATAGCATTTAACTGAGGGGCTCT
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT-T
** * *
17956031 -TATTTGGCCAGGAGATTCTTCTTTGACATCATCAATTTTGGTTTTTC-CTAAGGCTTAAGAGGC
194 GTATTTGG-CAGGAGATTCTTCTTTGATTTCATCAAATTT--TTTTTCTC-AA-ACTTAAGAGGC
*
17956094 CAATTTAAATGCTACGAGTAAAT
254 CAATTTGAATGCTACGAGTAAAT
* * *
17956117 AAAAATAGAGGGACCAAATCCGTGCAAATCAATAAGTACAAAGACTATT-TTAGAATTAAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
*** * * * * *** * * **
17956181 AAATAATATTTGTTTCACGATATTTGCATGACAC-TGAGCTGCTTGCATTTGGTAGGGAGATTCT
66 AAATAATATTTGTTTCACTCGA-CT-C-TAACACGCGA-C-G-TT-C--TTGATATAAAAAATAA
** **** * * * * ** * * *
17956245 TCGTTGATTTCATCGATTT-TCATTTTTTTCT-CAAACTTAAGACGCCAATTTGAATGCTATGAG
122 TAATT--TTT--T---TTTATC--TTAAAACTGCCATCTTACG-CGGCGGTTTCAA-G--ATAAT
** *** * * * *** * * * *** * ** *
17956308 TAAATAAAAATAGAG-GGATCAAATCTGCGCA-AATCAATAAGTATAAGGACTATTC-TTAGAAT
174 TGCATGTGACT-GAGCTGCTTGTATTTG-GCAGGA--GATTCTTCT-TTGA-T-TTCATCA-AAT
* **** ** ** * * * * ** **
17956370 TTAACCTAATATAATATTTGTTTCTTTCGACTCTGACATGTG-GTG-TTCTTG-ATTT
231 TT----T--T-T--T-TCTCAAACTTAAGAGGC-CA-ATTTGAATGCTACGAGTAAAT
* ** ***** * ** * * ** * * * * * * *
17956425 AAAAAT-TAGTAATTTTTTTAC-CTTAAAACTACCATTACATGTGATTGGGCTGCTTA-TATTTG
1 AAAAATAGAGGGA-CCAAATCCGCGCAAATCAATAAGTACAAG-GACT---ATTCTTAGAATTTA
* ** * ** * * ** *
17956487 GCAGAGAGATTCT-TCGTTGATTTCA-TCAATTTTTTTTCTCAA-ACTAAAGA-GGTCAATTTGA
61 ACCTA-AAATAATAT--TTG-TTTCACTCGA------CTCT-AACAC--GCGACGTTC---TTG-
* * ** *** * * * *
17956548 ATGCTAAGAGTAAATAA-AA-ATAGTGGAATC--AAATCCGCGCAAATCAATAAGAACAAGGAC-
109 AT-ATAA-A--AAATAATAATTTTTTTTTATCTTAAAACTGC-C--ATC-TTACG--C--GG-CG
* * * ** * ** * * * * * **
17956608 -TATTCTTAGAATTTAACCT-AAAAT-AAT-ATTTGTTTCAATCGACTCTGACA-AACGA-GGTT
161 GT-TTC-AAG-A--TAA-TTGCATGTGACTGAGCTGCTT--GT--A-TTTGGCAGGA-GATTCTT
* * ** ** * * * * * *
17956667 C-TTGATATAAAAAAATAATAATTTTTT-T--ATTTTAAAACTGTC--TTCTTAA-GCGACAGAT
214 CTTTGATTTCATCAAAT--T--TTTTTTCTCAAACTTAAGA-GGCCAATT-TGAATGCTAC-GAG
17956725 TCAATAT
272 T-AA-AT
* * ** ** * ** ** * *** *
17956732 AATAGCATTTGACTGAGGAGCTCTTATTTG-GC-CAGGAGAT-TCTTCTTTGA-TA-TCATCA-A
1 AA-A--AATAGA--G-GGA-C-CAAATCCGCGCAAATCA-ATAAGTACAAGGACTATTC-TTAGA
* ** * * * * * ** ** * *** * ** ***
17956791 TTTTTTTCCCCAAACTTAAGAGGCCAATTTGAATGCTACAAGTA-AATAAAAATAGAGGGACCAA
56 --ATTTAACCTAAA-AT-A-A----TATTTG-TTTC-ACTCG-ACTCTAACACGCGACGTTCTTG
** ** ******* * * * *** *****
17956855 ATCCACGCAAATCAATAAGTACGAGGACTATCTTAGAATTAAACCTAAAATA-GTATTTGTTTCA
109 ATATA-AAAAAT-AATAA-T-TTTTTTTTATCTTAAAACT--GCC-ATCTTACGCGGCGGTTTCA
* * ** * * * * *
17956919 CGATATTTGCATGACATTGAGCTGCTTGCATTTGGCAGGGAGATTCTTCGTTGGTTTCATCGATT
167 AGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATC-A-A
* * *
17956984 TTCCTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTATGAGTAAAT
229 AT--TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAAT
* * * *
17957034 AAAAGTAGAGGGATCAAATCCACGCAAATCAATAAGTACAAAGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * * * * * *
17957099 ATATAATATTTGTTTCTTTAGACCCTGACATGCGACATTCTTGATATAAACAAAT-AT--TTTCA
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAA-AAATAATAATTT-T
* * * * * ** *
17957161 TTTCTATTTTACAGCTGCCATCTTAAGCGATGCTTTCAAGATAATTGCATGTGACTGAGCTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* ** **
17957226 GTATTTGGCGGGAAGATTCTTCTTTGATTTCATCGATTTTGTTTTTTTCTCAAACTTAAGACCCC
194 GTATTTGGCAGG-AGATTCTTCTTTGATTTCATC-A-AAT-TTTTTTTCTCAAACTTAAGAGGCC
**
17957291 AATTTGAATGCTACGAAAAAAT
255 AATTTGAATGCTACGAGTAAAT
* * *
17957313 GAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAATGACTATTCTTAGAATTTAACGTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * ** * * *
17957378 AAATAATAATTGTTTCACTCGACTCTGACATGTGGTGTTCATGATATAAAAATTAGTAATTTTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTTTTT
* * * * * *
17957443 TTTA-CATTAAAACTGCCATCTTAGGCGGTGGTTTCAAGATAATTACATGTGATTGGGCTGCTTA
131 TTTATC-TTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
** * * * *
17957507 TATTTGGCAGAGAGATTCTTGGTTGATTTCATC-GATTTTTTTTCTCAAGCTAAAGAGGTCAATT
195 TATTTGGCAG-GAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCCAATT
*
17957571 TGAATGCTAAGAGTAAAT
259 TGAATGCTACGAGTAAAT
* * * * *
17957589 AAAAATAGTGGGATCAAATCCGCGCAAATCAGTAAGGACAATGACTATTCTTAGAATTTAACCT-
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* *
17957653 -AA-AATA--------ACT-GA--C--ACGC-CG-CATTCTTGATATAAAAAATAATTAATTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAA-TAA---TT
** * * * *
17957701 TTTTTTTATCTTAAAACCACCATATTACGCGGCAGTTTCAAGTTAATTGCATGTGACTAAGCTGC
127 TTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
** **
17957766 TTGTATTTGGCATGGAGATTCTTGGTTGATTTCATCTATTTTATTTTTTTCTCAAACTT-A-AGG
192 TTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATC-A-AAT-TTTTTTTCTCAAACTTAAGAGG
*
17957829 CTCTGATTTGAATGCTACGAGTAAAT
253 C-C-AATTTGAATGCTACGAGTAAAT
*
17957855 AAAAATAAAGGG-----AT-----CAAA-C--T---T--AA-GACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * *
17957901 AACTAATATTTGTTTCTTTCGACTCT-------GAC---ATTGATATGAACAAAT-AT--TTTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAAATAATAATTT-T
* * * *
17957953 TTTCTATTTTAAAGCTGCCATCTTACGCGGCGCGGCAGTTTGAAGATAATTGCATGTGA-TAGAG
129 TTTTTATCTTAAAACTGCCATCTTACGC-G-GC-G--GTTTCAAGATAATTGCATGTGACT-GAG
* *
17958017 CTACTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCAT-AGATTTTGTTTTTTTCTCAAACTTA
188 CTGCTTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCA-A--AT-TTTTTTTCTCAAACTTA
* * *
17958081 AGACGTCAATTTGAATGCTACGAATAAAT
248 AGAGGCCAATTTGAATGCTACGAGTAAAT
* *
17958110 AAAAATAGAGGGACCAAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAAACTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * *
17958175 AAATAATATTTGTTTCACTCAACTCTGAA-ACGCGAAGATCTTGATATAAACAATAATAAATTCT
66 AAATAATATTTGTTTCACTCGACTCT-AACACGCGACGTTCTTGATATAAAAAATAAT-AATTTT
* * * * * * *
17958239 TTTTTATTTTAAAACTGTCATATTATGCGGTGGTTTCAAGATAATTGTATGTGACTGAGGTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * * * * *
17958304 GTATTTGGCAAGGTGATTCTTCGTTGATTTCATTAATTTTCTTTTTTTTTTCTTAAACTTAAGAC
194 GTATTTGGC-AGGAGATTCTTCTTTGATTTCATCAA------ATTTTTTTTCTCAAACTTAAGAG
*
17958369 GCCAATTTGAATGCTATGAGTAAAT
252 GCCAATTTGAATGCTACGAGTAAAT
* ** * * * *
17958394 AAAAATAGAGGGATCAAATATGCACAAATCAATAAGTGCAAGGACTATTCTTAAAATTTAGCCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * ** * * *
17958459 ATATAATATTTGTTTC-TTACAACTCTGAGTCACGATGTTATTGATATAAAAGAAT-AT--TTTC
66 AAATAATATTTGTTTCACT-CGACTCTAACACGCGACGTTCTTGATATAAAA-AATAATAATTT-
* * * * * ** **
17958520 TTTTCTATTTTAAAGCTGCCATCTTATGCGGCGGGTAAAAGATAATTTTATGTGACTGAGCTGCT
128 TTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * * * * *
17958585 AGTATTTAGCAAGGAGATTCTTCTTTGATTTCATCGATTTTTTTTTCTCAAACTTAAGATGTCTA
193 TGTATTTGGC-AGGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCCAA
* *
17958650 TTTGAATGTTACAAGTAAAT
257 TTTGAATGCTACGAGTAAAT
* * * * * *
17958670 TAAAATAGAGGGATCATATCCGCGCAAATCAATAAGTACAAGGACTTTTCTTAAAATTTAAACTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * **
17958735 AAATAATATTAGTTTCACTTGACTCTGACAAGTGATGTTCTAGATATGTAAAATAAT-A--TTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTTTTT
* * * * * ** *
17958797 TTTATCTTAAAACTGCCATCTTAAGCAGTGGTCTCAAGATAACTATATGTGAGTGAGCTGCTTGT
131 TTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGT
* * * * * *
17958862 ATTTGGCAGGGAGATTTTTCGTTGATTTAATCAATTTTGTTTTTTACTTAAACTTAAGACGCCAA
196 ATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA-ATT-TTTTTT-CTCAAACTTAAGAGGCCAA
*
17958927 TTTGCATGCTACGAGTAAAT
257 TTTGAATGCTACGAGTAAAT
* * * * * * *
17958947 TAAAATAGAAGAACTAAATCCGTGCAAATCACTAAGTACGAGGACTATT-TGTAGAATTTAACCT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCT-TAGAATTTAACCT
* * * * * *
17959011 AAAATAATATTTGTTTCACTCAACTATGACACAC-AGCGTTATTGATATTAAAAAAT-AT-TTTC
65 AAAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATA-TAAAAAATAATAATT-
* * * ** * * * * *
17959073 TTTTTTTAT-TATAAAATTGTCATATTACATGACGGTTTGAAGGTAATTGCATGTGGCTGAGCTA
127 TTTTTTTATCT-TAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTG
* *
17959137 CTTGTACTTT-TCAGGTAGATTCTTCTTTGATTTCATCAATTTTGTTTTTTTCTCAAACTTAAGA
191 CTTGTA-TTTGGCAGG-AGATTCTTCTTTGATTTCATCAA--AT-TTTTTTTCTCAAACTTAAGA
*
17959201 GGCCAATTTCAATGCTACGAGTAAAT
251 GGCCAATTTGAATGCTACGAGTAAAT
* * *
17959227 AAAAATAGAGGGACCAAATCCACGCAAATC---AAG---AAGTACTACTCTTAG-----------
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17959275 -AATAATATTTGTTTCTCTCGACTCTAATAGGTGGCGTTCTGGATATAATAAATAATAAATTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AA----T
* * *
17959339 TTTTTTTTATCTTAAGACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCGTTTGACTGAGCTG
126 TTTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTG
* * * *
17959404 CTTGTATTTGGTAGGGAGATTCTTCGTCGATTTCATCAATATTGTTTTTTTCTCAAACTTAAGAC
191 CTTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA-A-T-TTTTTTTCTCAAACTTAAGAG
* *
17959469 ACCAATTTAAATGC--CGAGTAAAT
252 GCCAATTTGAATGCTACGAGTAAAT
** * * * * * *
17959492 AAAAATAGAGGGAAAAAATCCACCCAAATCAATAAGTAAAAAGACTATACTTAAAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * *
17959557 AAATAATATTTGTTTCTCTCGACTCTGACACGTGCCGTTCCTAATATAAAAAAATAATAA-TTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAAATAATAATTTTT
* * * * *
17959621 TTTTATCTTAAAACTTCTATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTAAACTGCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * ** *
17959686 TATTTGGCAAGGAGATTCCTCGTTGATTTCATCAGTTTTCTTTTTTTATTCTCAAACTTAAGACG
195 TATTTGGC-AGGAGATTCTTCTTTGATTTCATCA-----AATTTTTT-TTCTCAAACTTAAGAGG
*
17959751 CCAATTTGAAAGCTACGAGTAAAT
253 CCAATTTGAATGCTACGAGTAAAT
** * * * * * * * *
17959775 AAAAATAGAGGGATAAAATCTGTGCAAATCTATAAATTCAAGGATTACTCTTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
** ** ** * *
17959840 AAATAATATTTGTTTCTTTCGACTC-ATGTACGAAACATTCTTGATAT---AAA-AA-AATTCTT
66 AAATAATATTTGTTTCACTCGACTCTA-ACACGCGACGTTCTTGATATAAAAAATAATAATTTTT
* * * ** * * *
17959899 TTCTATTTTAAAGCTGCCATCTTACGCCACGGTTTCAAGATAATTGAATCTGACTGAGTTGCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * * * **
17959964 TATTTAGCGAGGAGAATCTTCTTTGATTTCATCGATTTGATTTTTTCTCAAACTTAAGATTCCAA
195 TATTTGGC-AGGAGATTCTTCTTTGATTTCATCAAATT--TTTTTTCTCAAACTTAAGAGGCCAA
*
17960029 TTTGAATGCTACGAATAAAT
257 TTTGAATGCTACGAGTAAAT
* * * * *
17960049 AAAAATAGAGGGATCAAATCTGCGCAAATCTATAAGTGCAAGGACTATTCTTAGAATTTAAACTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * *
17960114 AAATAATATTTGTTTCACGCGACACTGACACGAGGCGTTCTTGATATAAAAGACAATAAATTGTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATTTTT
* * ** * *
17960179 TTTTATCTTAAAACT-CCAATCTTAAGTGATGGTTTCAAGATAGA-TGCATGTGACTAAGCTTCT
130 TTTTATCTTAAAACTGCC-ATCTTACGCGGCGGTTTCAAGATA-ATTGCATGTGACTGAGCTGCT
* * *
17960242 TGTATTTGGCAGGACGATTCTTCGTTGATTTCATCAATTTTTCTTTTTTCTCAAACTTAAGAGCC
193 TGTATTTGGCAGGA-GATTCTTCTTTGATTTCATCAA--ATT-TTTTTTCTCAAACTTAAGAGGC
* *
17960307 CAACTTGAATGCTACGAGTAAAAAA
254 CAATTTGAATGCTACGAGT--AAAT
* ** **
17960332 AAAAATAGAGGGACCAATTCCAAGCAAATCAATTTGTACAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17960397 AAATTATATTTGTTTCAATCGACACTGACATGC-AGCGTTCTTAATATAAAAAATAATAA-ATTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATATAAAAAATAATAATTTTT
* * * *
17960460 TTTTATCTTAAAACTGCTATC-TACCACGGCTGTTTCAAGATAATTGCATGTGACTGAGCTACTT
130 TTTTATCTTAAAACTGCCATCTTA-CGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* ** * *
17960524 GTGTTTGGCAGGGAGATTCTTAGTTGATTTCATCAATTTTCATTTTTTATTCTCAAACTTAAAAC
194 GTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA-----ATTTTTT-TTCTCAAACTTAAGAG
* * *
17960589 GCAAATTTGAAAGTTACGAGTAAAT
252 GCCAATTTGAATGCTACGAGTAAAT
* ** * * * * * *
17960614 AAAAATAGAGGGATCAAATTTGTGCAAATCTATAAATTCAAGGACTACTCTTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * * *
17960679 AAATAATTTTTGTTTCTTTCGACTCTGACACG-GAACATTCTTGATATATAAAAA-AAT--TTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCG-ACGTTCTTGATATA-AAAAATAATAATTTT
* * * *
17960740 TTTCTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAGCTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * ** *
17960805 GTATTTGGCGAGGAAATTCTTCATTGATTTCATCGATTTTATTTTTTTCTCAAACTTAAGATGCC
194 GTATTTGGC-AGGAGATTCTTCTTTGATTTCATC-A-AAT-TTTTTTTCTCAAACTTAAGAGGCC
*
17960870 AATTTGAATGCTAAGAGTAAAT
255 AATTTGAATGCTACGAGTAAAT
** * * *
17960892 AAAAATAGAGGG-CGCAAATCCATGCAAATCTATAAGTACAAGGACTATTTTTAAAATTTGAA-C
1 AAAAATAGAGGGAC-CAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTT-AACC
* * *
17960955 TAAAATAATATTTGTTTCACTCGACAT-TGACACGAGGCGTTCTTGATATAAAAAA-AATAAATT
64 TAAAATAATATTTGTTTCACTCGAC-TCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT
* * * * * * * * * * *
17961018 GTTTTTTACCTTAAAATTGCAATCTTAAGCGGTGGTTTCAAGATAGTTACATGTTAATGAGCTTC
127 TTTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* * * * *
17961083 TTGTAGTTGGCAGGAAAATTCTTCGTTGGTTTCATCAATTTTTCTTTTTTCTCAAACTTAAGAGG
192 TTGTATTTGGCAGG-AGATTCTTCTTTGATTTCATCAA--ATT-TTTTTTCTCAAACTTAAGAGG
* *
17961148 CCAACTAGAATGCTACGAGTAAAT
253 CCAATTTGAATGCTACGAGTAAAT
* * * * *
17961172 AAAAATAGAGGGAACAAATCCGTGCAAAACAATATGTACAAAGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * *
17961237 AAATTATATTTGTTTCACTCGACACTGACATGTGACATTCTTGATATAAAAAATAATAAATTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT-TT
* * * * * * *
17961302 TTTTTAATCTTAAAATTGCCATATTATGCGGCAGTTTCAAGATAATTGCATGTGATTGACCTACT
129 TTTTT-ATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * *
17961367 TGTATTTGGCAAGGAGAATCTTCTTTGCTTTCATC-AACTTTTTTTCTCAAACTTATAGACGCCA
193 TGTATTTGGC-AGGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTA-AGAGGCCA
*
17961431 ATTAGAATGCTACGAGTAAAT
256 ATTTGAATGCTACGAGTAAAT
* * * *
17961452 AAAAATATAGGGACCAAATCCG-ACAAATCAATAAGTACAAGGACTTTTCATAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17961516 AAAAAATATTTGTTTCAATCGACTCTGACACACGAGGTTCATGATAGAAAAAAATAATAATTTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATA-TAAAAAATAATAATTT-T
* * * *
17961581 TTTTTATTTTAAAACTGCCATCTTACGCGGCGGATTCAATG-TAATTGCATGTGACTAAGCTCCT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAA-GATAATTGCATGTGACTGAGCTGCT
* * * * *
17961645 CT-TATTTGGCCAGGACATTCTTCTTCGATATCATCAATTTTGTTTTTTTCTCGAACTTAAGAGG
193 -TGTATTTGG-CAGGAGATTCTTCTTTGATTTCATCAA--AT-TTTTTTTCTCAAACTTAAGAGG
*
17961709 CCAATTTGAATGCTATGAGTAAAT
253 CCAATTTGAATGCTACGAGTAAAT
* * *
17961733 AAAAATAGAAGGACCAAATCCGCGCAAATCAATAAGTACAAGAACTATTCTTAGAATTAAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
** * * * * * *
17961798 AAATAATATTTGTTTCTTTCAACCCTGACATGCGACGTTTTTGATATAAACAAAT-AT--TTTCA
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAA-AAATAATAATTT-T
* * * * * * * *
17961860 TTTCTATTTTAAAGCTGCCATCTTATGTGGCAGTTTGAAGATAATTGCATGTGACAGAGCTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
** ** * *
17961925 GTATTTGGTGGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTTTTTCTCAAACTTAAGACGTC
194 GTATTTGG-CAGGAGATTCTTCTTTGATTTCATC-A-AAT-TTTTTTTCTCAAACTTAAGAGGCC
* * **
17961990 AATTTGAATGCTGCAAAAAAAT
255 AATTTGAATGCTACGAGTAAAT
** * * *
17962012 AAAAATAGAGGGACCAAATTTGCGCGAATCAGTAACTACAAGGACTATTCTTAGAATTTATA-CT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTA-ACCT
* * * * *
17962076 AAAATAATATTTGTTTCACTCGACTCTGAA-ATGCAAAGATCTTGATATAAACAATAATAATTTT
65 AAAATAATATTTGTTTCACTCGACTCT-AACACGCGACGTTCTTGATATAAAAAATAATAATTTT
* * * * *
17962140 TTTTTATCTTAAAACTGTCATATTACGCGGCGGTTTCAAGATAACTGTATGTGACTGAGGTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * * * * * **
17962205 GTATTTGGTAGGGATATTCTTCGTGGATTTCATCAATTTTCTTTTTTTCTCAAACTTAATACACC
194 GTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA--AT-TTTTTTTCTCAAACTTAAGAGGCC
*
17962270 AATTTGAATGCTACAAGTAAAT
255 AATTTGAATGCTACGAGTAAAT
* * *
17962292 -AAAATAGAGGGATCAAATCCTCGCAAATCAATAAGTACAAGGACTATTCTTCGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
*** * * * *
17962356 AAATAATATTTGTTTGTTTCGACCCTGACACTTC-ACGTTGTTGATAT-AAAAA-AAT-ATTTTC
66 AAATAATATTTGTTTCACTCGACTCTAACAC-GCGACGTTCTTGATATAAAAAATAATAATTTT-
* ** * * *
17962417 ATTTTTATTTTAAAGTTGCCATCTTATGCGACGGTTTCAGGATAATTGCATGTGACTGAGCTGCT
129 -TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * ** **
17962482 TGTATTTGGCGGGGAAATTCTTCTTTGATTTCATTGATTTTGTTTTTTTCTCAAACTTAAGACCC
193 TGTATTTGGC-AGGAGATTCTTCTTTGATTTCA-TCA-AAT-TTTTTTTCTCAAACTTAAGAGGC
* **
17962547 CAATTTGAATGCTACAAAAAAAT
254 CAATTTGAATGCTACGAGTAAAT
* * * * *
17962570 AAAAATAGATGGACCAAATCCACGCAAATCAAAAAGTACAATGATTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * *****
17962635 AAATTATATTTGTTTCACTCGACTTTGACATGTGCCGTTCTTGATGTAAAAAATAA-AA-AAAAG
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTTTTT
* * * * ** * * *
17962698 TTTACCTTAAAA-TAGCCATTTTAGGCAGTTGTTTTAAGATAATTACATGTGACT-AGGTTGCTT
131 TTTATCTTAAAACT-GCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGA-GCTGCTT
* * * *
17962761 GTATTTGGCAGGGAGATACTTCGTTGATTTCATCAATTTTGTTTTTTTTCTCAAACTTAATAGGC
194 GTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAA----ATTTTTTTTCTCAAACTTAAGAGGC
* *
17962826 CAATTTGAATGCTAAGAGTAAAC
254 CAATTTGAATGCTACGAGTAAAT
* * * *
17962849 AAAAATAGTGGGACCAAATCCGTGCAAATAAATAAGTACAAGGACTATTCTTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* *
17962914 AAATAATATTTGTTTCA-TCAACTCTAACACGCGGCGTTCTTGATATAAAAAAATAATAA--TTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAAATAATAATTTTT
* * * **
17962976 TTTTATCTTAAAACTG-CATATTACGTGGCGGTTTCAAGTTAATTGCATGTGACTGAGCTATTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* ** * * *
17963040 TATTTGGCAAGGAGATTCATGGTTGATTTCATCAATTTTATTTTTTTCTAAAACTTAAGATGCCA
195 TATTTGGC-AGGAGATTCTTCTTTGATTTCATCAA--AT-TTTTTTTCTCAAACTTAAGAGGCCA
17963105 ATTTGAATGCTACGAGTAAAT
256 ATTTGAATGCTACGAGTAAAT
* * *
17963126 AAAAATAGAGGGATCAAATCTGCGCAAATCAATAAGTATAAGGA-TATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* **
17963190 AACTAATATTTGTTTCTTTCGACTCTAACACGCGACGTTCTTGATATAAAAGAAT-AT--TTTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAA-AATAATAATTT-T
* * * * * * * ** * * * *
17963252 ATTCTATTTTAAAGCTTCCATATTACGCGACAATTTGAAGATAATTGCATGTGACAGAACTTCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* ** *
17963317 GTATTTGGCGGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTTTTTCTCAAACTTAAGATGCC
194 GTATTTGGC-AGGAGATTCTTCTTTGATTTCATC-A-AAT-TTTTTTTCTCAAACTTAAGAGGCC
* *
17963382 AATTTGAATGCTAAGAATAAAT
255 AATTTGAATGCTACGAGTAAAT
* *
17963404 AAAAATAGAGGGACCAAATCCGCGCAAATCAGTAAGTACAAGGACTATTCTTAGAATTTAAACTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * *
17963469 AAATAATATTTGTTTCACTCGAATCTGACATGCGGCGTTCTTGATA-AAAAAATAATGAA-TTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATTTTT
* * * ** * * * * * *
17963532 TTTTATCTTAAAACTGCTATCTTAAGTGTTGGTTTGAAGAGAGTTGCTTGTGACTAAGCAGCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * * * *
17963597 T-TTTCGGAAGGGAGATTCTTCGTAGATTTCATCAATTTTGTTTTTTCTCAAACATAAGA-GCCT
195 TATTT-GGCA-GGAGATTCTTCTTTGATTTCATCAA-ATT-TTTTTTCTCAAACTTAAGAGGCC-
* *
17963660 AGCTTT-AATGCTACAAGTAAAT
255 A-ATTTGAATGCTACGAGTAAAT
* * * * * * *
17963682 AAAAGTAGAGGGACCAAATTCTCACAAATCAATAAGTACGAGGCCTATTCTTAGAATTGAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * *
17963747 AAATAATTTTTTTTTCACTCGACACTAACACGTGACGTTCTTGATATAAAAAATAATAAACTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AA-TTTT
* * * * * *
17963812 TTTTTATCTTAAAACTTCCATCTTAAGCTGTGGTTTTAAGATAATTTCATGTGACTGAGCTGCTT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
** * *
17963877 GTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTTTTTTTCTCAAATTTGAAGAC
194 GTATTTGGCA-GGAGATTCTTCTTTGATTTCATC-A----AATTTTTTTTCTCAAACTT-AAGAG
*
17963942 GCCAATTTGAATGTTACGAGTAAAT
252 GCCAATTTGAATGCTACGAGTAAAT
* * * * * *
17963967 AAAAATATAGGGACCAAATCCGTGCAAATTAATAAGAACAAGGATTATTCTTAGAATATAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
** *
17964032 AAATAATATTTGTTTCTTTCGACTCTAACACAC-AGCGTTCTTGATAT-AAAAA-AA-AATTTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATATAAAAAATAATAATTT-T
* * * * * * *
17964093 TTTTTAT-TTGAAAATTGTCATCTTACGTGGTGGTTTCAAAATAATTGTATATGACTGAGCTGCT
129 TTTTTATCTT-AAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * **
17964157 TGTATTTGGAAGGAAGATTCTTCTTTTATTTCATTGATTTTGTTTTTTTCTCAAACTT-AGAGGC
193 TGTATTTGGCAGG-AGATTCTTCTTTGATTTCA-TCA-AAT-TTTTTTTCTCAAACTTAAGAGGC
*
17964221 CAATTTGAATGCTACAAGTAAAT
254 CAATTTGAATGCTACGAGTAAAT
* * * * *
17964244 AAAAATAGAGGGACCAAATCCGGGCAAATCCATAAGTACAAGTACTTTTCTTACAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* *
17964309 AAATAATATTTGTTTCACTAGACTCTGACACGC-AGCGTTCTTGATATAAAAAATAATAAATTCT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATATAAAAAATAAT-AATT-T
* * *
17964373 ATTTTTTATCTTAAAACTGCCATATTACACGGCGGTTTCAAGATAATTGCATGTGTCTGAGCTGC
128 -TTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* *
17964438 TTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTGTCTTTCTCTCAAACTTAAGAGG
192 TTGTATTTGGCA-GGAGATTCTTCTTTGATTTCATCAAATTT-T-TTT-TCTCAAACTTAAGAGG
* *
17964503 CTAATTAGAATGCTACGAGTAAAT
253 CCAATTTGAATGCTACGAGTAAAT
* * *
17964527 AAATATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGGCTATTCTTAGTATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * *
17964592 AAATAATATTTGTTTTACTCGACTCTAACACGCGAAATTCTTGATATAAAAAATAAGAAGTTATT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAA-TTTTT
** * * * *
17964657 TTTTATCTTAAAACTGCCATAGTACGTGGCAGTTTCAAGATAATTGTATGTGACTGAGGTGCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
****** * *
17964722 TATTTGGCAGGGAGATTCTT-TGTTGATTTCAT-AAAAAAAAATTGTCAAACTTAATACGG-CAA
195 TATTTGGCA-GGAGATTCTTCT-TTGATTTCATCAAATTTTTTTTCTCAAACTTAAGA-GGCCAA
17964784 TTTGAATGCTACGAGTAAAT
257 TTTGAATGCTACGAGTAAAT
* * * * *
17964804 AAAAATAGAGGGATCAAATCCACACAAATCAATAAATTCAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * * *
17964869 AAATAAGATTTGATTCAGTCAACACTATCACACGGCGTTCTTGATATAAAAAATAATAACTTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAA-TTTTT
* * * *
17964934 TTTTATCTTAAAACTGCCATCTTAAGCGGTGGTTTCAAGATAATTTCATGTGACTGAGCTTCTTG
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * *
17964999 TATTTGGCAGCGGGATTCTTCTTTGATTTCATC-GA--TTTTTTCTCAAACTTGAAGACGCCAAT
195 TATTTGGCAG-GAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTT-AAGAGGCCAAT
17965061 TTGAATGCTACGAGTAAAT
258 TTGAATGCTACGAGTAAAT
* * * * *
17965080 AAAAATATAGGG-CCAAATCCGCGCTAATCAATAAGAACAAGGACTATTTTTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * *
17965144 AAATAAAATTTGTTTCACTTGACTCTGACACGC-AGCGTTGTTGATATAATAAAATAATAATTTG
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATATAA-AAAATAATAATTTT
* ** *
17965208 TTTTTATTTTAAAACTATCATCTTACGCGGCAGTTTC-AGTATAATTGCATGTGACTGAGCTGCT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAG-ATAATTGCATGTGACTGAGCTGCT
*** * * * ** * *
17965272 TGTATTTCAAAGAGAGATTCTTCTTTTATTTAATTGATTTTTATTTTTTTCTCAAACGTAAGAGA
193 TGTATTTGGCAG-GAGATTCTTCTTTGATTTCA-TCA--AAT-TTTTTTTCTCAAACTTAAGAGG
*
17965337 CCAATTTGAATGCTACAAGTAAAT
253 CCAATTTGAATGCTACGAGTAAAT
* * ** * * *
17965361 AAAAATACAGTGACCAAATCCATGTAAATCAATAAGTACAAGTACTA-TGTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * *
17965425 AAATAATATTTGTTTCACTAGACTCTAACACGCGGCATTCTTGATATAAAAAATAATAAATTCTA
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT-TT
* * ** * * *
17965490 GTTTTATCTTAAAACTGCCATATTACATGGCGGTTTCAAGATAATTGCATTTGACTCAACTG-TT
129 TTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * * *
17965554 CATTTTTGGCAGGCAGATTCTTCTTTGATTTCATCGATTTTGCCTTTTTCTCAAACTTAAGAGGC
194 -GTATTTGGCAGG-AGATTCTTCTTTGATTTCATCAAATTT---TTTTTCTCAAACTTAAGAGGC
*
17965619 CAATTTGAATGCTAAGAGTAAAT
254 CAATTTGAATGCTACGAGTAAAT
* * * ** * *
17965642 AAAAATAGAGGGTCTAAATCTGCTTAAATCAATAAGTACAAGGAATATT-TCTAGTATTTAACCT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCT-TAGAATTTAACCT
* * * *
17965706 AAAATAAAATTTATTTCACTCGACTCTGACACGCGAAGTTCTTGATATAAAAAATAATAAATTCT
65 AAAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAAT-AATT-T
* * * * * * *
17965771 TTTTTTATCTTAAAATTGCCATATTACGCAGTGGTTTCAAGATAATTGTATGTGATTGAGGTGCT
128 TTTTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * *
17965836 TGTATTTGGCAGGGAGATTCTT-TGTTGATTTCATC-AATTTTTTTTGTCGAACTTAAGACGCCA
193 TGTATTTGGCA-GGAGATTCTTCT-TTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCCA
17965899 ATTTGAATGCTACGAGTAAAT
256 ATTTGAATGCTACGAGTAAAT
* * * * * * * *
17965920 AAAAATAGAGGGATCAAATCCACACAAATCAATAAATTCAAGGACTACTATTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
** * * * * *
17965985 AAATAATATTTGTTTCTTTCAACTCTGACACGCAATGTTCTTAATAT-AAAAA-AAT-ATTTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTT-TT
* * * * * * *
17966047 TTCTATTTTAAAGCTGCCATCTTAAGCGACGATTTAAAGATAA
130 TTTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAA
17966090 CTACATTGTT
Statistics
Matches: 10308, Mismatches: 2120, Indels: 1233
0.75 0.16 0.09
Matches are distributed among these distances:
247 22 0.00
248 2 0.00
249 4 0.00
250 27 0.00
251 1 0.00
252 2 0.00
253 2 0.00
254 2 0.00
255 115 0.01
256 12 0.00
257 3 0.00
258 18 0.00
259 6 0.00
260 4 0.00
261 10 0.00
262 123 0.01
263 2 0.00
264 5 0.00
265 46 0.00
266 49 0.00
267 111 0.01
268 9 0.00
271 11 0.00
272 3 0.00
273 97 0.01
274 425 0.04
275 309 0.03
276 358 0.03
277 727 0.07
278 1543 0.15
279 1540 0.15
280 1171 0.11
281 1142 0.11
282 942 0.09
283 645 0.06
284 227 0.02
285 124 0.01
286 34 0.00
287 17 0.00
288 2 0.00
289 8 0.00
291 1 0.00
293 2 0.00
294 14 0.00
295 17 0.00
296 16 0.00
297 6 0.00
298 25 0.00
299 15 0.00
300 7 0.00
301 19 0.00
302 16 0.00
303 13 0.00
304 22 0.00
305 10 0.00
306 8 0.00
307 20 0.00
308 18 0.00
309 19 0.00
310 14 0.00
311 26 0.00
312 15 0.00
313 17 0.00
314 17 0.00
315 17 0.00
316 19 0.00
317 13 0.00
318 8 0.00
319 8 0.00
320 6 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (276 bp):
AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAAATAATAATTTTTT
TTTATCTTAAAACTGCCATCTTACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGT
ATTTGGCAGGAGATTCTTCTTTGATTTCATCAAATTTTTTTTCTCAAACTTAAGAGGCCAATTTG
AATGCTACGAGTAAAT
Found at i:17954573 original size:837 final size:831
Alignment explanation
Indices: 17952767--17966089 Score: 9895
Period size: 837 Copynumber: 15.9 Consensus size: 831
17952757 AGTTTTAACA
* *
17952767 AAAAATAGAGGGACCAAATCCGCCCAAATCAATAAGTAAAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * *
17952832 AAATAATATTTGTTTCACTCCACTCTGACATGTGCCGTCCTTAATATAAAAA-AATAATAAT-TT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAAT-TTCTT
* * * *
17952895 TTTTAATCTTAAAACTGCTATCTAAAGCGACGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
130 TTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* *
17952960 GTATTTCGCAGGAAGATTCTTCGTTGATTTCATCAAATTTCTTTTTTTTTTCTCAAACTTAAGAC
195 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATC-AATTT-TTTTTTTTTTCTCAAACTTAAGAC
* * * * * * *
17953025 GCCAATTTGAAAGCCACGAATAAATAAAAATAGAGGGATCAAATCCGTGAAAATCTAA-AAATTC
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATC-AATAAGTAC
* * ** *
17953089 AAGGACTACTCTTAGAATTTAACCAAAAATAATATTTGTTTCTTTTAACTCTAA-AACGCAACAT
322 AAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAA-GCAACGT
* * * * *
17953153 TCTTGATAT-AAAAAAATATTTCTTTTCTATTTTAAATCTACCATCTTACGTGACGGCTTCAAGA
386 TCTTGATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGA
* * * *
17953217 TAAATCCATCTGACTGAGCTGCTTGTATTTGGC-GAGGAGATTCTTCTTTGATTTCATCAATTTT
451 TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAG-GGAGATTCTTCTTTGATTTCATCGATTTT
* * ** *
17953281 TTTTCTCAAACTTAAGATGCCAATTTGAATGCTACGAATAAATGCAGATA-AGGGACCAAATCCG
515 TTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCG
* * * *
17953345 TGCAAATCTATAAGTACAAGTACTATTCTTAGAATTTACACTAAAATAATATTTGTTTCACGCGA
580 CGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTA-ACTAAAATAATATTTGTTTCACTCGA
* * * *
17953410 CAT-TAACACG-AGGCGTTCTTAATGTAAAAAATAATAAATTGTTTTTTTATCTTAAAACTGCAA
644 C-TCTGACACGCA--CGTTCTTGATATAAAAAATAAT-AATT-TTTTTTTATCTTAAAACTGCCA
*** * * * *
17953473 TCTTAAGCTATGGTTTCAAGATAGTTACATGTGACTGAGCTTCTTGTATTTGACAGGATGATTCT
704 TCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGA-GATTCT
* *
17953538 TTGTTGATTTCATCAATTTTGCATTTTTCTCAAACTTAAGAGGCCAACTTGAATGCTACGAGTAA
768 TCGTTGATTTCATCAATTTT---TTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
17953603 A-
830 AT
* * * ** * *
17953604 AAAAATAGGGGGACCAATTCCGAC-CAGATCAATTTGTTCAAGGACAATTCTTAGAATTTAACCT
1 AAAAATAGAGGGACCAAATCCG-CGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCT
* * * * * ***
17953668 AAAATTATATATGTTTCACTCGACAT-TGACGCGCTG-CGTTCTTAATATAAAAA-AATAATAAA
65 AAAATAATATTTGTTTCACTCGAC-TCTAACACGC-GACGTTCTTGATATAAAAATAATAATTTC
* * * * *
17953730 TTTTTTTATCTTAAAACTGCTATCTAACGAGGTGGTTTCAAGATAGTTGCATGTGACTGAGATGC
128 TTTTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* * **
17953795 TTGTATTTAGCAGGGAGATTCTTCATTGATTTCATCAATTTTCTTTTTTTATTCTCAAACTGGAG
193 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTT-TTCTCAAACTTAAG
** * * * * * * *
17953860 GTACCAATTTGAAAGCTACGAGTAAA-AAAAATAAAGGTATCAAATCCATGCAAATCTATAAATT
256 ACACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTA
* * * * *
17953924 CAAGGACTACTCTTAGAATATAACCAAAAATAATATTTGTTTCTTTCAACTCTAACAAGCAACAT
321 CAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGT
* * * * *
17953989 TATTGATATAAAAAAAATATTTCTTTTCTATTTTAAAACTGTCATATTACACGACGGTTTCAAGA
386 TCTTGATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGA
** * * * *
17954054 TAATTGCATGCAACTGACCTACTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCCA-TTAT
451 TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTT
* * * *** * * *
17954118 TTTCTCCAACGTAAAGACACCAACAAGAATGCTACGAGTAAATAAAAATATAGGG-TCAAATCCA
516 TTTCTCAAAC-TTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCG
* * *
17954182 TGCAAATCAATAAGTACAAGGACTATTCTTAAAATTTAACTAAAAAATAATATTTGTTTAACTCG
580 CGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACT--AAAATAATATTTGTTTCACTCG
* * * * * *
17954247 ACTCTAACACGCTATGTTCTTGATATAAAATAATAATAATTTCTTTTTTATTTTAAAATTGTCGT
643 ACTCTGACACGC-ACGTTCTTGATATAAAA-AATAATAATTT-TTTTTTATCTTAAAACTGCCAT
* * * * * *
17954312 CTTACGCGGCGGTTTCAATATAATTGCGTGTTACTAAGATGCTCT-TATTTGGCTAGGAGATTCT
705 CTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT-TGTATTTGGC-AGGAGATTCT
* * ** *
17954376 TCTTTGACTTCATCAAAATTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACAAGTAAAT
768 TCGTTGATTTCATCAATTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAAT
* ** * * *
17954440 AAAAATAGAGGTACCAAATTAGCGAAAATAAATAAGTACAAGGACTATTCTTAGAATTTAACTTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * *
17954505 AAATAATATTTGTTTCACTCGACTCTAATACACGACATTCTTGATATAAAAATAATAATTTCTTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAATTTC-TT
** *
17954570 TTTTTATCTTAAAAC-GACCATACT-ACATGGCGG-TTCAAGATATTTGCATGTGACTGAGCTGC
130 TTTTTATCTTAAAACTG-CCAT-CTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* **
17954632 TTGTATTTGGAAGGGAGATTCTTCGTTGATTTCATCAATTTTAATTTTTTTCTCAAACTTAAGAC
193 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGAC
* * * ** **
17954697 ACCGATTTGAATACTACGAGTAAATAAAAATAGAGGTATCAAATTTGTGCAAATCAATAAGTAGG
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACA
* * * * **** *
17954762 AGGACCATTCTTAGAATTTAACCTAAAATAATATTTGATTCTATCGACCCTAACACTTGACATTC
323 AGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGTTC
* * * * * **
17954827 TTGATAT-AAACAAATATTTTCATTTTTATTTTAAAGCTGCCGTCTTACTCGGTGGTTTCAAGAT
388 TTGATATAAAAAAAATA-TTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGAT
* *
17954891 AATTGCATGTGACTAAGCTTCTTGTATTTGGCTA-GGAGATTCTTCTTTGATTTCATCGATATTA
452 AATTGCATGTGACTGAGCTGCTTGTATTTGGC-AGGGAGATTCTTCTTTGATTTCATCG--ATT-
* * ** *
17954955 TTTTTTCAACAAACTTAAGACCCCAATTTGAATGCTAC-AAAAATATAAAAATAAAGGGACCAAA
513 TTTTTTC-TCAAACTTAAGACGCCAATTTGAATGCTACGAGTAA-ATAAAAATAGAGGGACCAAA
* * * * ** *
17955019 TCCTCACAAATCAATAAGTACAACGATTGCTCTTAGAATTTAACCTAAAATAATATTTGCTTCAC
576 TCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCAC
* * * * * *
17955084 TCGACTCTGACATGCTGCATTCTTGATATAAAAAATAGTAA--TTTTTTTACCTTAAAACTGTCA
640 TCGACTCTGACACGC-ACGTTCTTGATATAAAAAATAATAATTTTTTTTTATCTTAAAACTGCCA
* * * * * * *
17955147 TCTTAGGTGGTGGTTTCAAGATAATTACTTGTGACT-AGGCTACTTGTATTTGGTAGGGAGATTC
704 TCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGA-GCTGCTTGTATTTGGCA-GGAGATTC
* *
17955211 TTCATTGATTTCATCAATTTTGTTTTTCTCTCAAACTTAAGAGGCCAATTTGAATGCTAAGAGTA
767 TTCGTTGATTTCATCAA-TTT-TTTTT-TCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTA
17955276 AAT
829 AAT
* * * * * *
17955279 AAAAATAAAGGGACAAAATCCGTGCAAATCTATAAGTACAAGGACTATTCTAAAAATTTTAA-CT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAA-TTTAACCT
* * * * *
17955343 AAAATAATATTTGTTTCACTCGACACTGACACGAGGCGTTCTTGATATAAAAAATAATAA-AT-T
65 AAAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCT
* * * * * * * *
17955406 GTTTTTATCTTAAAACTGCAATCTTAA-GTGGTGGTTTCAAGATAGTTACATGTGAGTGAGCTTC
129 TTTTTTATCTTAAAACTGCCATC-TAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* * * * * * *
17955470 TTGTAGTTGGCAAGAAGATTCTTCATTGATTTCAT-TATTTTTTCTTTTTTCTCAAACTTAAGAG
193 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGAC
* * * * * * * *
17955534 GCCAACTTGCATGCTACGAGTAAATAAAAATACAGGGACCAAATCCGCGCAAAACAATATGTACA
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACA
* * * * ** * * * *
17955599 AGGACTATTCCTAAAATTTAACCTAAAATTATATTTGTTTCACTT-GAAACTGACATGCGATGTT
323 AGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTC-TTTCGACTCTAACAAGCAACGTT
* * * * * * *
17955663 CTTGATATAAAAAGTAATAAATTCTTTTTTTAATCTTAAAATTGCCATATTATGCTG-CGATTTC
387 CTTGATATAAAAA-AAAT-ATTTC-TTTTTT-ATTTTAAAACTGCCATCTTACGC-GACGGTTTC
* * *
17955727 AAGATAATTGCATGTGACTGACCTGCTTGTATTTGGCAGGGAGAATGTTCTTTGATTTCATCG-T
447 AAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGAT
* * *
17955791 TTTTTTTCTCAAACTTAAAGACGCCAATTAGAATGTTACGAGTAAATAAAAATATAGGGACCAAA
512 TTTTTTTCTCAAACTT-AAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
* *
17955856 TCCGCGCAAATCAAAAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAA
576 TCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCAC
* *
17955921 TCGACTCTGACACGCAAGGTTCTTGATATAAAATAATAATAA--TTTTTTTATTTTAAAACTGCC
640 TCGACTCTGACACGC-ACGTTCTTGATATAAAA-AATAATAATTTTTTTTTATCTTAAAACTGCC
* * * * * * * **
17955984 TTCTTAAGCGGCAGATTCAATATAATAGCATTTAACTGAGGGGCTCT-TATTTGGCCAGGAGATT
703 ATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT-TGTATTTGG-CAGGAGATT
* ** * *
17956048 CTTCTTTGACATCATCAATTTTGGTTTTTC-CTAAGGCTTAAGAGGCCAATTTAAATGCTACGAG
766 CTTCGTTGATTTCATCAATTTT--TTTTTCTC-AA-ACTTAAGAGGCCAATTTGAATGCTACGAG
17956112 TAAAT
827 TAAAT
* * *
17956117 AAAAATAGAGGGACCAAATCCGTGCAAATCAATAAGTACAAAGACTATT-TTAGAATTAAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
*** * * * * *
17956181 AAATAATATTTGTTTCACGATATTTGCATGACAC-TGAGCTGCTTGCATTTGGTAGGGAGATTCT
66 AAATAATATTTGTTTCACTCGA-CT-C-TAACACGCGA-C-G-TT-C--TTGATA--TA-A----
** * * * * * * ***
17956245 TCGTTGATTTCATCGATTTTCATTTTTTTCTCAAACTTAAGAC-GCCAATTTGAATGCTATGAGT
115 ------AAATAAT--AATTTC--TTTTTT-T--ATCTTAAAACTGCC-ATCT-AACGCGGCG-GT
* * * * * *** * *** ** ** ** * * * *
17956309 AAATAAAAATAGA-GGGATCAAATCTGCGC-AAATCAATAAGTATAAGGACTATTCTTAG--AAT
164 --TTCAAGATA-ATTGCATGTGA-CTGAGCTGCTTGTATTTG-GCAGGGA-GATTCTTCGTTGAT
* * * * * * * * ** **
17956370 TTAACCTAATATAATATTTGTTTCTT-TC-GACTCT--G--A-C-ATGTG-GTG-TTCTTG-ATT
223 TTCATC-AAT-T--T-TTTTTTTTTTCTCAAACT-TAAGACACCAATTTGAATGCTACGAGTAAA
* ** **** ** * *** *
17956424 TAAAAAT-TAGTAATTTTTTTACC-TTAAAACTACCATTACATGTGATTGGGCTGCTTATAT-TT
282 TAAAAATAGAGGGA-TCAAAT-CCGTGCAAA-T--CAATA-A-GT-ACAAGG--AC-TAT-TCTT
* * * ** * **
17956486 GGCAGAGAGATTCT-TCGTTGATTTCATCAATTT-TTT-TTCTC-AAACTAA-AGAGGTCAA---
335 -----AGA-ATT-TAAC-CTAAAATAAT--ATTTGTTTCTT-TCGACTCTAACA-A-G-CAACGT
* ** **** ** ** * * * * * * *
17956543 T-TTGAATGCTAAGAGTAAATAAAAATAGTGGA-ATCAAATCCGCGCAAATCAATAAGAAC-AAG
386 TCTTG-AT-ATAA-AAAAAATATTTCTTTTTTATTTTAAAACTGC-C--ATC-TTACG--CGACG
* * * ** * ** * * * * ** *
17956605 GACTATTCTTAGAATTTAACCT-AAAAT-AAT-ATTTGTTTCAATCGACTCTGACAAACGAGGTT
442 G--T-TTC-AAG-A--TAA-TTGCATGTGACTGAGCTGCTT--GT--A-TTTGGC-AGGGAGATT
* * * **** * * ** * * * * *
17956667 CTTGATATAAAAAAAT-AATAATTTTTT-T--ATTTTAAAACTGTC--TTCTTAA-GCGACAGAT
493 CTT-CTTTGATTTCATCGAT-TTTTTTTCTCAAACTTAAGAC-GCCAATT-TGAATGCTAC-GAG
* * ** * * ** * ** * * * *
17956725 TCAAT-ATAATAGCATTTGA-C---T--GAGGAGCTC-TTATTTGGCCAGGA-GATTCTT---CT
553 TAAATAAAAATAG-A-GGGACCAAATCCGCGCAAATCAATAAGT-ACAAGGACTATTCTTAGAAT
* ** * * *
17956778 TTGA-TATCATCAAT-TTT-TTTCCCCAAACTTAAGAGGCCAATTTGA-ATGCTACAAGTAAATA
615 TTAACTAAAAT-AATATTTGTTT---C--AC-T-CGA---C--TCTGACACGC-AC--GT---T-
* * * * ******* * * * **
17956839 AAAATAGAGGGACCAAATCCACGCAAATCAATAAGTACGAGGACTATCTTAGAATTAAACC-TAA
660 ---CTTGA--TA--TAA---A---AAAT-AATAA-T-TTTTTTTTATCTTAAAACT--GCCATCT
* ***** * * ** * *
17956903 AATAGTATTTGTTTCACGATATTTGCATGACATTGAGCTGCTTGCATTTGGCAGGGAGATTCTTC
707 TA-AGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCA-GGAGATTCTTC
* * * *
17956968 GTTGGTTTCATCGATTTTCCTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTATGAGTAAA
770 GTTGATTTCATC-A-ATT--TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAA
17957033 T
831 T
* * * *
17957034 AAAAGTAGAGGGATCAAATCCACGCAAATCAATAAGTACAAAGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * * * * * * * *
17957099 ATATAATATTTGTTTCTTTAGACCCTGACATGCGACATTCTTGATATAAACA-AATATTTTC-AT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAATTTCTTT
* * * * ** *
17957162 TTCTATTTTACAGCTGCCATCTTAA-GCGATGCTTTCAAGATAATTGCATGTGACTGAGCTGCTT
131 TTTTATCTTAAAACTGCCATC-TAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * * *
17957226 GTATTTGGC-GGGAAGATTCTTCTTTGATTTCATCGA-TTTTGTTTTTTTCTCAAACTTAAGACC
195 GTATTTGGCAGGG-AGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACA
** * * *
17957289 CCAATTTGAATGCTACGAAAAAATGAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAA
259 CCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACAA
* * * ** * * **** *
17957354 TGACTATTCTTAGAATTTAACGTAAAATAATAATTGTTTCACTCGACTCTGACATGTGGTGTTCA
324 GGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGTTCT
* * ** * **
17957419 TGATATAAAAATTAGTAATTT-TTTTTTACATTAAAACTGCCATCTTAGGCGGTGGTTTCAAGAT
389 TGATATAAAAA-AAAT-ATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGAT
* * * * * **
17957483 AATTACATGTGATTGGGCTGCTTATATTTGGCAGAGAGATTCTTGGTTGATTTCATCGATTTTTT
452 AATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTTT
* * * * * * *
17957548 TTCTCAAGCTAAAGAGGTCAATTTGAATGCTAAGAGTAAATAAAAATAGTGGGATCAAATCCGCG
517 TTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCG
* * * *
17957613 CAAATCAGTAAGGACAATGACTATTCTTAGAATTTAACCT--AA-AATA--------ACT-GACA
582 CAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCACTCGACT
** *
17957666 C-G-C-CGCA--TTCTTGATATAAAAAATAATTAATTCTTTTTTTTTATCTTAAAACCACCATAT
646 CTGACACGCACGTTCTTGATATAAAAAATAA-TAA---TTTTTTTTTATCTTAAAACTGCCATCT
* * * * *
17957726 TACGCGGCAGTTTCAAGTTAATTGCATGTGACTAAGCTGCTTGTATTTGGCATGGAGATTCTTGG
707 TAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCA-GGAGATTCTTCG
* *
17957791 TTGATTTCATCTATTTTATTTTTTTCTCAAACTT-A-AGGCTCTGATTTGAATGCTACGAGTAAA
771 TTGATTTCATC-A-ATT-TTTTTTTCTCAAACTTAAGAGGC-C-AATTTGAATGCTACGAGTAAA
17957854 T
831 T
*
17957855 AAAAATAAAGGG-----AT-----CAAA-C--T---T--AA-GACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * * * *
17957901 AACTAATATTTGTTTCTTTCGACTCT-------GAC---ATTGATATGAACA-AATATTTTC-TT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAATTTCTTT
* * * * *
17957954 TTCTATTTTAAAGCTGCCATCTTACGCGGCGCGGCAGTTTGAAGATAATTGCATGTGA-TAGAGC
131 TTTTATCTTAAAACTGCCATCTAACGC-G-GC-G--GTTTCAAGATAATTGCATGTGACT-GAGC
* * *
17958018 TACTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCAT-AGA-TTTTGTTTTTTTCTCAAACTTA
190 TGCTTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCA-ATTTTTTTTTTTTTCTCAAACTTA
** * * **
17958081 AGACGTCAATTTGAATGCTACGAATAAATAAAAATAGAGGGACCAAATCCACGCAAATCAATAAG
254 AGACACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAG
* ** * *
17958146 TACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCACTCAACTCTGAA-ACGCGA
319 TACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCT-AACAAGC-A
* * * * * * **
17958210 A-GATCTTGATATAAACAATAATAAATTCTTTTTTATTTTAAAACTGTCATATTATGCGGTGGTT
382 ACGTTCTTGATATAAA-AAAAAT-ATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTT
* * * * *
17958274 TCAAGATAATTGTATGTGACTGAGGTGCTTGTATTTGGCAAGGTGATTCTTCGTTGATTTCATTA
445 TCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTC----
** * *
17958339 ATTTTCTTTTTTTTTTCTTAAACTTAAGACGCCAATTTGAATGCTATGAGTAAATAAAAATAGAG
506 A---TCGATTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAG
* ** * * * * *
17958404 GGATCAAATATGCACAAATCAATAAGTGCAAGGACTATTCTTAAAATTTAGCCTAATATAATATT
568 GGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTA-ACTAAAATAATATT
* * * * * *
17958469 TGTTTC-TTACAACTCTGAGTCACG-ATGTTATTGATATAAAAGAAT-AT--TTTCTTTTCTATT
632 TGTTTCACT-CGACTCTGA--CACGCACGTTCTTGATATAAAA-AATAATAATTT-TTTTTTATC
* * * ** ** * *
17958529 TTAAAGCTGCCATCTTATGCGGCGGGTAAAAGATAATTTTATGTGACTGAGCTGCTAGTATTTAG
692 TTAAAACTGCCATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGG
* * * * * *
17958594 CAAGGAGATTCTTCTTTGATTTCATCGATTTTTTTTTCTCAAACTTAAGATGTCTATTTGAATGT
757 C-AGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGC
*
17958659 TACAAGTAAAT
821 TACGAGTAAAT
* * * * * *
17958670 TAAAATAGAGGGATCATATCCGCGCAAATCAATAAGTACAAGGACTTTTCTTAAAATTTAAACTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * * *
17958735 AAATAATATTAGTTTCACTTGACTCTGACAAGTGATGTTCTAGATATGTAAAATAAT-A----TT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCTT
* * * * ** *
17958795 TTTTTATCTTAAAACTGCCATCTTAA-GCAGTGGTCTCAAGATAACTATATGTGAGTGAGCTGCT
130 TTTTTATCTTAAAACTGCCATC-TAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * * * *
17958859 TGTATTTGGCAGGGAGATTTTTCGTTGATTTAATCAA-TTTTGTTTTTTACTTAAACTTAAGACG
194 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACA
* * * * * *
17958923 CCAATTTGCATGCTACGAGTAAATTAAAATAGA-AGAACTAAATCCGTGCAAATCACTAAGTACG
259 CCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATC-AAATCCGTGCAAATCAATAAGTACA
** * * * *
17958987 AGGACTATT-TGTAGAATTTAACCTAAAATAATATTTGTTTCACTCAACTATGACACA-CAGCGT
323 AGGACTATTCT-TAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACA-AGCAACGT
* * * * * * ** *
17959050 TATTGATAT-TAAAAAATATTTTCTTTTTTTATTATAAAATTGTCATATTACATGACGGTTTGAA
386 TCTTGATATAAAAAAAATA-TTTC-TTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAA
* * * * * *
17959114 GGTAATTGCATGTGGCTGAGCTACTTGTACTTT-TCAGGTAGATTCTTCTTTGATTTCATCAATT
449 GATAATTGCATGTGACTGAGCTGCTTGTA-TTTGGCAGGGAGATTCTTCTTTGATTTCATCGA--
* *
17959178 TTGTTTTTTTCTCAAACTTAAGAGGCCAATTTCAATGCTACGAGTAAATAAAAATAGAGGGACCA
511 -T-TTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCA
* * * *
17959243 AATCCACGCAAATC---AAG---AAGTACTACTCTTAG-----------AATAATATTTGTTTCT
574 AATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACTAAAATAATATTTGTTTCA
* * * ** * * *
17959291 CTCGACTCTAATAGGTGGCGTTCTGGATATAATAAATAATAAATTCTTTTTTTTTTATCTTAAGA
639 CTCGACTCTGACACG-CACGTTCTTGATATAAAAAATAAT-AA----TTTTTTTTTATCTTAAAA
* * * *
17959356 CTGCCATCTTACGCGGCGGTTTCAAGATAATTGCGTTTGACTGAGCTGCTTGTATTTGGTAGGGA
698 CTGCCATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCA-GGA
* ** *
17959421 GATTCTTCGTCGATTTCATCAATATTGTTTTTTTCTCAAACTTAAGACACCAATTTAAATGC--C
762 GATTCTTCGTTGATTTCATC-A-ATT-TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTAC
17959484 GAGTAAAT
824 GAGTAAAT
** * * * * * *
17959492 AAAAATAGAGGGAAAAAATCCACCCAAATCAATAAGTAAAAAGACTATACTTAAAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17959557 AAATAATATTTGTTTCTCTCGACTCTGACACGTGCCGTTCCTAATATAAAAA-AATAATAAT-TT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAAT-TTCTT
* * * *
17959620 TTTTTATCTTAAAACTTCTATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTAAACTGCTT
130 TTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * *
17959685 GTATTTGGCAAGGAGATTCCTCGTTGATTTCATCAGTTTTCTTTTTTTATTCTCAAACTTAAGAC
195 GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTT-TTCTCAAACTTAAGAC
* * * * * * *
17959750 GCCAATTTGAAAGCTACGAGTAAATAAAAATAGAGGGATAAAATCTGTGCAAATCTATAAATTCA
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACA
* * * * * *
17959815 AGGATTACTCTTAGAATTTAACCAAAAATAATATTTGTTTCTTTCGACTCATGTAC--GAAACAT
323 AGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTC-T-AACAAGCAACGT
* * *
17959878 TCTTGATAT--AAAAAA-A-TTCTTTTCTATTTTAAAGCTGCCATCTTACGCCACGGTTTCAAGA
386 TCTTGATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGA
* * * * *
17959939 TAATTGAATCTGACTGAGTTGCTTGTATTTAGC-GAGGAGAATCTTCTTTGATTTCATCGATTTG
451 TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAG-GGAGATTCTTCTTTGATTTCATCGA-TT-
** * *
17960003 ATTTTTTCTCAAACTTAAGATTCCAATTTGAATGCTACGAATAAATAAAAATAGAGGGATCAAAT
513 -TTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAAT
* * * *
17960068 CTGCGCAAATCTATAAGTGCAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCACG
577 CCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTT-AACTAAAATAATATTTGTTTCACT
* * * *
17960133 CGACACTGACACG-AGGCGTTCTTGATATAAAAGACAATAAATTGTTTTTTATCTTAAAACT-CC
641 CGACTCTGACACGCA--CGTTCTTGATATAAAAAATAAT-AATTTTTTTTTATCTTAAAACTGCC
* ** * *
17960196 AATCTTAAGTGATGGTTTCAAGATAGA-TGCATGTGACTAAGCTTCTTGTATTTGGCAGGACGAT
703 -ATCTTAAGCGGCGGTTTCAAGATA-ATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGA-GAT
* *
17960260 TCTTCGTTGATTTCATCAATTTTTCTTTTTTCTCAAACTTAAGAGCCCAACTTGAATGCTACGAG
765 TCTTCGTTGATTTCATCAA--TTT-TTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAG
*
17960325 TAAAAAA
827 T--AAAT
* ** **
17960332 AAAAATAGAGGGACCAATTCCAAGCAAATCAATTTGTACAAGGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17960397 AAATTATATTTGTTTCAATCGACACTGACATGC-AGCGTTCTTAATATAAAAAATAATAA---AT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGA-CGTTCTTGATAT-AAAAATAATAATTTCT
* * * * *
17960458 TTTTTTATCTTAAAACTGCTATCTACCACGGCTGTTTCAAGATAATTGCATGTGACTGAGCTACT
129 TTTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * *
17960523 TGTGTTTGGCAGGGAGATTCTTAGTTGATTTCATCAATTTTCATTTTTTATTCTCAAACTTAAAA
194 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT--TTTTTTTTTCTCAAACTTAAGA
* * * * ** * * *
17960588 CGCAAATTTGAAAGTTACGAGTAAATAAAAATAGAGGGATCAAATTTGTGCAAATCTATAAATTC
257 CACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTAC
* * * * * * *
17960653 AAGGACTACTCTTAGAATTTAACCAAAAATAATTTTTGTTTCTTTCGACTCTGACACGGAACATT
322 AAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGTT
* *
17960718 CTTGATATATAAAAAA-ATTTCTTTTCTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGAT
387 CTTGATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGAT
* * *
17960782 AATTGCATCTGACTGAGCTGCTTGTATTTGGC-GAGGAAATTCTTCATTGATTTCATCGATTTTA
452 AATTGCATGTGACTGAGCTGCTTGTATTTGGCAG-GGAGATTCTTCTTTGATTTCATCGA---T-
* *
17960846 TTTTTTTCTCAAACTTAAGATGCCAATTTGAATGCTAAGAGTAAATAAAAATAGAGGG-CGCAAA
512 TTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGAC-CAAA
** * * *
17960910 TCCATGCAAATCTATAAGTACAAGGACTATTTTTAAAATTTGAACTAAAATAATATTTGTTTCAC
576 TCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTT-AACTAAAATAATATTTGTTTCAC
* * *
17960975 TCGACAT-TGACACG-AGGCGTTCTTGATATAAAAAA-AATAAATTGTTTTTTACCTTAAAATTG
640 TCGAC-TCTGACACGCA--CGTTCTTGATATAAAAAATAAT-AATTTTTTTTTATCTTAAAACTG
* * * * * * * * *
17961037 CAATCTTAAGCGGTGGTTTCAAGATAGTTACATGTTAATGAGCTTCTTGTAGTTGGCAGGAAAAT
701 CCATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGG-AGAT
* * *
17961102 TCTTCGTTGGTTTCATCAATTTTTCTTTTTTCTCAAACTTAAGAGGCCAACTAGAATGCTACGAG
765 TCTTCGTTGATTTCATCAA--TTT-TTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAG
17961167 TAAAT
827 TAAAT
* * * * *
17961172 AAAAATAGAGGGAACAAATCCGTGCAAAACAATATGTACAAAGACTATTCTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * * * *
17961237 AAATTATATTTGTTTCACTCGACACTGACATGTGACATTCTTGATATAAAAAATAATAAATTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCTT
* * * * * * * *
17961302 TTTTTAATCTTAAAATTGCCATATTATGCGGCAGTTTCAAGATAATTGCATGTGATTGACCTACT
130 TTTTT-ATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * * * *
17961367 TGTATTTGGCAAGGAGAATCTTCTTTGCTTTCATCAA-----CTTTTTTTCTCAAACTTATAGAC
194 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTA-AGAC
* * * * *
17961427 GCCAATTAGAATGCTACGAGTAAATAAAAATATAGGGACCAAATCCG-ACAAATCAATAAGTACA
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACA
* * * ** * * *
17961491 AGGACTTTTCATAGAATTTAACCTAAAAAAATATTTGTTTCAATCGACTCTGACACA-CGAGGTT
323 AGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACA-AGCAACGTT
* * * *
17961555 CATGATAGAAAAAAATAATAATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGGCGGATTCAA
387 CTTGATA-TAAAAAA-AAT-ATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAA
* * * * * *
17961620 TG-TAATTGCATGTGACTAAGCTCCTCT-TATTTGGCCA-GGACATTCTTCTTCGATATCATCAA
449 -GATAATTGCATGTGACTGAGCTGCT-TGTATTTGG-CAGGGAGATTCTTCTTTGATTTCATCGA
* * * *
17961682 TTTTGTTTTTTTCTCGAACTTAAGAGGCCAATTTGAATGCTATGAGTAAATAAAAATAGAAGGAC
511 ---T-TTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGAC
* *
17961747 CAAATCCGCGCAAATCAATAAGTACAAGAACTATTCTTAGAATTAAACCTAAAATAATATTTGTT
572 CAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTT
** * * * * * * * *
17961812 TCTTTCAACCCTGACATGCGACGTTTTTGATATAAACAAAT-AT--TTTCATTTCTATTTTAAAG
636 TCACTCGACTCTGACACGC-ACGTTCTTGATATAAA-AAATAATAATTT-TTTTTTATCTTAAAA
* * * * * **
17961874 CTGCCATCTTATGTGGCAGTTTGAAGATAATTGCATGTGACAGAGCTGCTTGTATTTGGTGGGGA
698 CTGCCATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGG-CAGGA
* * * * *
17961939 GATTCTTCTTTGATTTCATCGATTTTGTTTTTTTCTCAAACTTAAGACGTCAATTTGAATGCTGC
762 GATTCTTCGTTGATTTCATC-A-ATT-TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTAC
* **
17962004 AAAAAAAT
824 GAGTAAAT
** * * *
17962012 AAAAATAGAGGGACCAAATTTGCGCGAATCAGTAACTACAAGGACTATTCTTAGAATTTATA-CT
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTA-ACCT
* * * *
17962076 AAAATAATATTTGTTTCACTCGACTCTGAA-ATGCAAAGATCTTGATATAAACAATAATAA-TT-
65 AAAATAATATTTGTTTCACTCGACTCT-AACACGCGACGTTCTTGATATAAA-AATAATAATTTC
* * * * * *
17962138 TTTTTTTATCTTAAAACTGTCATATTACGCGGCGGTTTCAAGATAACTGTATGTGACTGAGGTGC
128 TTTTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGC
* * * * *
17962203 TTGTATTTGGTAGGGATATTCTTCGTGGATTTCATCAA-TTTTCTTTTTTTCTCAAACTTAATAC
193 TTGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGAC
*
17962267 ACCAATTTGAATGCTACAAGTAAAT-AAAATAGAGGGATCAAATCC-TCGCAAATCAATAAGTAC
258 ACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGT-GCAAATCAATAAGTAC
* * * * **
17962330 AAGGACTATTCTTCGAATTTAACCTAAAATAATATTTGTTTGTTTCGACCCTGACACTTC-ACGT
322 AAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACA-AGCAACGT
* * ** * *
17962394 TGTTGATAT-AAAAAAATATTTTCATTTTTATTTTAAAGTTGCCATCTTATGCGACGGTTTCAGG
386 TCTTGATATAAAAAAAATA-TTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAG
* * *
17962458 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCGGGGAAATTCTTCTTTGATTTCATTGATTTT
450 ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA---T
* * ** *
17962523 GTTTTTTTCTCAAACTTAAGACCCCAATTTGAATGCTACAAAAAAATAAAAATAGATGGACCAAA
512 -TTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAA
* * * * *
17962588 TCCACGCAAATCAAAAAGTACAATGATTATTCTTAGAATTTAACCTAAAATTATATTTGTTTCAC
576 TCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCAC
* * * ***** *
17962653 TCGACTTTGACATGTGC-CGTTCTTGATGTAAAAAATAA-AA-AAAAGTTTACCTTAAAA-TAGC
640 TCGACTCTGACA--CGCACGTTCTTGATATAAAAAATAATAATTTTTTTTTATCTTAAAACT-GC
* * * ** * * *
17962714 CATTTTAGGCAGTTGTTTTAAGATAATTACATGTGACT-AGGTTGCTTGTATTTGGCAGGGAGAT
702 CATCTTAAGCGGCGGTTTCAAGATAATTGCATGTGACTGA-GCTGCTTGTATTTGGCA-GGAGAT
* * *
17962778 ACTTCGTTGATTTCATCAATTTTGTTTTTTTTCTCAAACTTAATAGGCCAATTTGAATGCTAAGA
765 TCTTCGTTGATTTCATCAA---T-TTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGA
*
17962843 GTAAAC
826 GTAAAT
* * * *
17962849 AAAAATAGTGGGACCAAATCCGTGCAAATAAATAAGTACAAGGACTATTCTTAGAATTTAACCAA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * **
17962914 AAATAATATTTGTTTCA-TCAACTCTAACACGCGGCGTTCTTGATATAAAAA-AATAA-TAATTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAATTTCTTT
* * * * **
17962976 TTTTATCTTAAAACTG-CATATTACGTGGCGGTTTCAAGTTAATTGCATGTGACTGAGCTATTTG
131 TTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
* * * * * **
17963040 TATTTGGCAAGGAGATTCATGGTTGATTTCATCAA-TTTTATTTTTTTCTAAAACTTAAGATGCC
196 TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACACC
* * *
17963104 AATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCTGCGCAAATCAATAAGTATAAGG
261 AATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACAAGG
* * *
17963169 A-TATTCTTAGAATTTAACCTAAACTAATATTTGTTTCTTTCGACTCTAACACGCGACGTTCTTG
326 ACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGTTCTTG
* * * * * * ** *
17963233 ATAT-AAAAGAATATTTTCTATTCTATTTTAAAGCTTCCATATTACGCGACAATTTGAAGATAAT
391 ATATAAAAAAAATA-TTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAAT
* * * *
17963297 TGCATGTGACAGAACTTCTTGTATTTGGCGGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTT
455 TGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA---T-TTTT
* * *
17963362 TTTCTCAAACTTAAGATGCCAATTTGAATGCTAAGAATAAATAAAAATAGAGGGACCAAATCCGC
516 TTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGC
* *
17963427 GCAAATCAGTAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCACTCGAA
581 GCAAATCAATAAGTACAAGGACTATTCTTAGAATTT-AACTAAAATAATATTTGTTTCACTCGAC
* * *
17963492 TCTGACATGCGGCGTTCTTGATA-AAAAAATAATGAA-TTTTTTTTATCTTAAAACTGCTATCTT
645 TCTGACACGC-ACGTTCTTGATATAAAAAATAAT-AATTTTTTTTTATCTTAAAACTGCCATCTT
* ** * * * * * * *
17963555 AAGTGTTGGTTTGAAGAGAGTTGCTTGTGACTAAGCAGCTTGT-TTTCGGAAGGGAGATTCTTCG
708 AAGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTT-GGCA-GGAGATTCTTCG
* * * *
17963619 TAGATTTCATCAATTTTGTTTTTTCTCAAACATAAGA-GCCTAGCTTT-AATGCTACAAGTAAAT
771 TTGATTTCATCAA-TTT-TTTTTTCTCAAACTTAAGAGGCC-A-ATTTGAATGCTACGAGTAAAT
* * * * * * *
17963682 AAAAGTAGAGGGACCAAATTCTCACAAATCAATAAGTACGAGGCCTATTCTTAGAATTGAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * **
17963747 AAATAATTTTTTTTTCACTCGACACTAACACGTGACGTTCTTGATATAAAAAATAATAAACTCTT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCTT
* * * * *
17963812 TTTTTATCTTAAAACTTCCATCTTAA-GCTGTGGTTTTAAGATAATTTCATGTGACTGAGCTGCT
130 TTTTTATCTTAAAACTGCCATC-TAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* * *
17963876 TGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTGTTTTTTTTTCTCAAATTTGAAGA
194 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTT-TTTTTTTTTCTCAAACTT-AAGA
* * * * * *
17963941 CGCCAATTTGAATGTTACGAGTAAATAAAAATATAGGGACCAAATCCGTGCAAATTAATAAGAAC
257 CACCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTAC
* * *
17964006 AAGGATTATTCTTAGAATATAACCTAAAATAATATTTGTTTCTTTCGACTCTAACACA-CAGCGT
322 AAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACA-AGCAACGT
* * * * ** *
17964070 TCTTGATATAAAAAAAA-ATTTCTTTTTTATTTGAAAATTGTCATCTTACGTGGTGGTTTCAAAA
386 TCTTGATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGA
* * * * * *
17964134 TAATTGTATATGACTGAGCTGCTTGTATTTGGAAGGAAGATTCTTCTTTTATTTCATTGATTTTG
451 TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGA---T-
* *
17964199 TTTTTTTCTCAAACTT-AGAGGCCAATTTGAATGCTACAAGTAAATAAAAATAGAGGGACCAAAT
512 TTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAAT
* * * * *
17964263 CCGGGCAAATCCATAAGTACAAGTACTTTTCTTACAATTTAACCTAAAATAATATTTGTTTCACT
577 CCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCACT
*
17964328 AGACTCTGACACGCAGCGTTCTTGATATAAAAAATAATAAATTCTATTTTTTATCTTAAAACTGC
641 CGACTCTGACACGCA-CGTTCTTGATATAAAAAATAAT-AATT-T-TTTTTTATCTTAAAACTGC
* *
17964393 CATATTACA-CGGCGGTTTCAAGATAATTGCATGTGTCTGAGCTGCTTGTATTTGGCAGGGAGAT
702 CATCTTA-AGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCA-GGAGAT
* * * *
17964457 TCTTCTTTGATTTCATCGATTTTGTCTTTCTCTCAAACTTAAGAGGCTAATTAGAATGCTACGAG
765 TCTTCGTTGATTTCATCAATTTT-T-TTT-TCTCAAACTTAAGAGGCCAATTTGAATGCTACGAG
17964522 TAAAT
827 TAAAT
* * *
17964527 AAATATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGGCTATTCTTAGTATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* ** * * *
17964592 AAATAATATTTGTTTTACTCGACTCTAACACGCGAAATTCTTGATATAAAAAATAAGAAGTT-AT
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCTT
* * * * *
17964656 TTTTTATCTTAAAACTGCCATAGT-ACGTGGCAGTTTCAAGATAATTGTATGTGACTGAGGTGCT
130 TTTTTATCTTAAAACTGCCAT-CTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCT
* ******* * * *
17964720 TGTATTTGGCAGGGAGATTCTTTGTTGATTTCAT-AA----AAAAAAATTGTCAAACTTAATACG
194 TGTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACA
* *** * *
17964780 GCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCACACAAATCAATAAATTCAA
259 CCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACAA
* * ** * * * **
17964845 GGACTATTCTTAGAATTTAACCTAAAATAAGATTTGATTCAGTCAACACTATCACA-CGGCGTTC
324 GGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACA-AGCAACGTTC
* * * **
17964909 TTGATATAAAAAATAATAACTTCTTTTTTATCTTAAAACTGCCATCTTAAGCGGTGGTTTCAAGA
388 TTGATATAAAAAA-AAT-ATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGA
* *
17964974 TAATTTCATGTGACTGAGCTTCTTGTATTTGGCAGCGG-GATTCTTCTTTGATTTCATCGA--TT
451 TAATTGCATGTGACTGAGCTGCTTGTATTTGGCAG-GGAGATTCTTCTTTGATTTCATCGATTTT
*
17965036 TTTTCTCAAACTTGAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATATAGGG-CCAAATCC
515 TTTTCTCAAACTT-AAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCC
* * * * * *
17965100 GCGCTAATCAATAAGAACAAGGACTATTTTTAGAATTTAACCAAAAATAAAATTTGTTTCACTTG
579 GCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTCACTCG
* * * **
17965165 ACTCTGACACGCAGCGTTGTTGATATAATAAAATAATAATTTGTTTTTATTTTAAAACTATCATC
643 ACTCTGACACGCA-CGTTCTTGATATAA-AAAATAATAATTTTTTTTTATCTTAAAACTGCCATC
* * ***
17965230 TTACGCGGCAGTTTC-AGTATAATTGCATGTGACTGAGCTGCTTGTATTTCAAAGAGAGATTCTT
706 TTAAGCGGCGGTTTCAAG-ATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAG-GAGATTCTT
* * * * * * * *
17965294 CTTTTATTTAATTGATTTTTATTTTTTTCTCAAACGTAAGAGACCAATTTGAATGCTACAAGTAA
769 CGTTGATTTCA-TCA--ATT-TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
17965359 AT
830 AT
* * ** * * *
17965361 AAAAATACAGTGACCAAATCCATGTAAATCAATAAGTACAAGTACTA-TGTTAGAATTTAACCTA
1 AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
* * * * *
17965425 AAATAATATTTGTTTCACTAGACTCTAACACGCGGCATTCTTGATATAAAAAATAATAAATTCTA
66 AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATAT-AAAAATAATAATTTCTT
* * * ** * * *
17965490 GTTTTATCTTAAAACTGCCATATTACATGGCGGTTTCAAGATAATTGCATTTGACTCAACTG-TT
130 TTTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTT
* * * * * *** **
17965554 CATTTTTGGCAGGCAGATTCTTCTTTGATTTCATCGA-TTTTGCCTTTTTCTCAAACTTAAGAGG
195 -GTATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACA
*
17965618 CCAATTTGAATGCTAAGAGTAAATAAAAATAGAGGG-TCTAAAT-C-TGCTTAAATCAATAAGTA
259 CCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATC-AAATCCGTGC--AAATCAATAAGTA
* * * * ** * *
17965680 CAAGGAATATT-TCTAGTATTTAACCTAAAATAAAATTTATTTCACTCGACTCTGACACGCGAA-
321 CAAGGACTATTCT-TAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGC-AAC
* * * * *
17965743 GTTCTTGATATAAAAAATAATAAATTCTTTTTTTATCTTAAAATTGCCATATTACGC-AGTGGTT
384 GTTCTTGATATAAAAAA-AAT-ATTTC-TTTTTTATTTTAAAACTGCCATCTTACGCGA-CGGTT
* * *
17965807 TCAAGATAATTGTATGTGATTGAGGTGCTTGTATTTGGCAGGGAGATTCTT-TGTTGATTTCATC
445 TCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCT-TTGATTTCATC
* * * *
17965871 AATTTTTTTTGTCGAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCA
509 GATTTTTTTTCTCAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCA
* * * * * * *
17965936 AATCCACACAAATCAATAAATTCAAGGACTACTATTAGAATTTAACCAAAAATAATATTTGTTTC
574 AATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAA-CTAAAATAATATTTGTTTC
** * * * * * *
17966001 TTTCAACTCTGACACGCAATGTTCTTAATAT-AAAAA-AAT-ATTTCTTTTCTATTTTAAAGCTG
638 ACTCGACTCTGACACGC-ACGTTCTTGATATAAAAAATAATAATTT-TTTTTTATCTTAAAACTG
* * *
17966063 CCATCTTAAGCGACGATTTAAAGATAA
701 CCATCTTAAGCGGCGGTTTCAAGATAA
17966090 CTACATTGTT
Statistics
Matches: 9966, Mismatches: 1918, Indels: 1203
0.76 0.15 0.09
Matches are distributed among these distances:
791 2 0.00
792 43 0.00
793 1 0.00
795 4 0.00
796 1 0.00
797 211 0.02
798 88 0.01
802 46 0.00
803 2 0.00
805 97 0.01
807 1 0.00
808 5 0.00
810 1 0.00
811 4 0.00
813 2 0.00
814 3 0.00
815 81 0.01
816 7 0.00
817 8 0.00
818 80 0.01
819 4 0.00
820 9 0.00
821 136 0.01
822 245 0.02
823 103 0.01
824 47 0.00
825 91 0.01
826 6 0.00
827 24 0.00
828 130 0.01
829 8 0.00
830 5 0.00
831 2 0.00
832 13 0.00
833 337 0.03
834 660 0.07
835 349 0.04
836 854 0.09
837 1642 0.16
838 707 0.07
839 525 0.05
840 955 0.10
841 662 0.07
842 341 0.03
843 173 0.02
844 258 0.03
845 152 0.02
846 7 0.00
847 1 0.00
849 1 0.00
852 2 0.00
854 1 0.00
855 2 0.00
856 10 0.00
857 16 0.00
858 9 0.00
859 17 0.00
860 13 0.00
861 7 0.00
862 3 0.00
863 10 0.00
864 12 0.00
865 17 0.00
866 28 0.00
867 9 0.00
868 11 0.00
869 10 0.00
870 25 0.00
871 17 0.00
872 30 0.00
873 19 0.00
874 9 0.00
875 8 0.00
876 9 0.00
878 14 0.00
879 11 0.00
880 14 0.00
881 22 0.00
882 35 0.00
883 21 0.00
884 29 0.00
885 10 0.00
886 15 0.00
887 24 0.00
888 26 0.00
889 10 0.00
890 8 0.00
891 18 0.00
892 19 0.00
893 13 0.00
894 13 0.00
895 7 0.00
896 9 0.00
897 1 0.00
900 3 0.00
902 1 0.00
904 2 0.00
907 2 0.00
908 1 0.00
909 3 0.00
910 11 0.00
912 1 0.00
913 2 0.00
914 9 0.00
915 11 0.00
916 53 0.01
917 76 0.01
918 41 0.00
919 1 0.00
920 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (831 bp):
AAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
AAATAATATTTGTTTCACTCGACTCTAACACGCGACGTTCTTGATATAAAAATAATAATTTCTTT
TTTTATCTTAAAACTGCCATCTAACGCGGCGGTTTCAAGATAATTGCATGTGACTGAGCTGCTTG
TATTTGGCAGGGAGATTCTTCGTTGATTTCATCAATTTTTTTTTTTTTCTCAAACTTAAGACACC
AATTTGAATGCTACGAGTAAATAAAAATAGAGGGATCAAATCCGTGCAAATCAATAAGTACAAGG
ACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCTTTCGACTCTAACAAGCAACGTTCTTG
ATATAAAAAAAATATTTCTTTTTTATTTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATT
GCATGTGACTGAGCTGCTTGTATTTGGCAGGGAGATTCTTCTTTGATTTCATCGATTTTTTTTCT
CAAACTTAAGACGCCAATTTGAATGCTACGAGTAAATAAAAATAGAGGGACCAAATCCGCGCAAA
TCAATAAGTACAAGGACTATTCTTAGAATTTAACTAAAATAATATTTGTTTCACTCGACTCTGAC
ACGCACGTTCTTGATATAAAAAATAATAATTTTTTTTTATCTTAAAACTGCCATCTTAAGCGGCG
GTTTCAAGATAATTGCATGTGACTGAGCTGCTTGTATTTGGCAGGAGATTCTTCGTTGATTTCAT
CAATTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAAAT
Found at i:17956670 original size:250 final size:254
Alignment explanation
Indices: 17956218--17956705 Score: 689
Period size: 250 Copynumber: 1.9 Consensus size: 254
17956208 ATGACACTGA
* * * * *
17956218 GCTGCTTGCATTTGGTAGGGAGATTCTTCGTTGATTTCATCGATTTTCATTTTTTTCTCAAACTT
1 GCTGCTTACATTTGGCAGAGAGATTCTTCGTTGATTTCATCGA-TAT-ATTTTTTTCTCAAACTA
* * *
17956283 AAGACGCCAATTTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAATCTGCGCAAATCAATAA
64 AAGACGCCAATTTGAATGCTAAGAGTAAATAAAAATAGAGGAATCAAATCCGCGCAAATCAATAA
* * * ** ***
17956348 GTATAAGGACTATTCTTAGAATTTAACCTAATATAATATTTGTTTCTTTCGACTCTGACATGTGG
129 GAACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAATCGACTCTGACAAACGG
* * *
17956413 TGTTCTTGAT-TTAAAAATTAGTAATTTTTTTACCTTAAAACTACCATTACATGTGATTGG
194 TGTTCTTGATATAAAAAAATAATAATTTTTTTACCTTAAAACTACCATTACATGTGATTGG
*
17956473 GCTGCTTATATTTGGCAGAGAGATTCTTCGTTGATTTCATC-A-AT-TTTTTTTCTCAAACTAAA
1 GCTGCTTACATTTGGCAGAGAGATTCTTCGTTGATTTCATCGATATATTTTTTTCTCAAACTAAA
* * *
17956535 GAGGTCAATTTGAATGCTAAGAGTAAATAAAAATAGTGGAATCAAATCCGCGCAAATCAATAAGA
66 GACGCCAATTTGAATGCTAAGAGTAAATAAAAATAGAGGAATCAAATCCGCGCAAATCAATAAGA
17956600 ACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAATCGACTCTGACAAACGAG-
131 ACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAATCGACTCTGACAAACG-GT
**
17956664 GTTCTTGATATAAAAAAATAATAATTTTTTTATTTTAAAACT
195 GTTCTTGATATAAAAAAATAATAATTTTTTTACCTTAAAACT
17956706 GTCTTCTTAA
Statistics
Matches: 206, Mismatches: 25, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
250 139 0.67
251 28 0.14
252 1 0.00
254 1 0.00
255 37 0.18
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (254 bp):
GCTGCTTACATTTGGCAGAGAGATTCTTCGTTGATTTCATCGATATATTTTTTTCTCAAACTAAA
GACGCCAATTTGAATGCTAAGAGTAAATAAAAATAGAGGAATCAAATCCGCGCAAATCAATAAGA
ACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTCAATCGACTCTGACAAACGGTG
TTCTTGATATAAAAAAATAATAATTTTTTTACCTTAAAACTACCATTACATGTGATTGG
Found at i:17967364 original size:29 final size:29
Alignment explanation
Indices: 17967321--17967541 Score: 126
Period size: 30 Copynumber: 7.5 Consensus size: 29
17967311 TCTGAGATCG
* *
17967321 AAAATGTGACTTTTGGAAATTTGGGGG-C
1 AAAATGTAATTTTTGGAAATTTGGGGGTC
* ** ** *
17967349 AAAATGGTAGTTTTTGGATGTTCAGTGG-C
1 AAAAT-GTAATTTTTGGAAATTTGGGGGTC
*
17967378 -AAATGGTAA-TTTTGGATGAGTTTGGGGGTC
1 AAAAT-GTAATTTTTGGA--AATTTGGGGGTC
*
17967408 AAAATGTAATTTTTGTGAAATTTGGGGGTT
1 AAAATGTAATTTTTG-GAAATTTGGGGGTC
* * *
17967438 AAAATGTAATTTTGGGAAATTTAGGTGTC
1 AAAATGTAATTTTTGGAAATTTGGGGGTC
* ** *** *
17967467 ACAATGTAATTTTTTACAAAGTTCAAGGGTT
1 AAAATGTAA-TTTTTGGAAA-TTTGGGGGTC
* * * *
17967498 AAAATGTATTTTTTACGAAGTTTAGGGGTC
1 AAAATGTAATTTTT-GGAAATTTGGGGGTC
17967528 AAAATGTAATTTTT
1 AAAATGTAATTTTT
17967542 ATAAAGTTTG
Statistics
Matches: 147, Mismatches: 36, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
27 7 0.05
28 13 0.09
29 40 0.27
30 61 0.41
31 24 0.16
32 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.26, T:0.39
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAATTTGGGGGTC
Found at i:17967497 original size:60 final size:60
Alignment explanation
Indices: 17967402--17967549 Score: 156
Period size: 60 Copynumber: 2.5 Consensus size: 60
17967392 GATGAGTTTG
** *** **
17967402 GGGGTCAAAATGTAATTTTTGTGAAA-TTTGGGGGTTAAAATGTA-ATTTTGGGAAATTTA
1 GGGGTCAAAATGTAATTTTT-ACAAAGTTCAAGGGTTAAAATGTATATTTTACGAAATTTA
* * * *
17967461 GGTGTCACAATGTAATTTTTTACAAAGTTCAAGGGTTAAAATGTATTTTTTACGAAGTTTA
1 GGGGTCAAAATGTAA-TTTTTACAAAGTTCAAGGGTTAAAATGTATATTTTACGAAATTTA
*
17967522 GGGGTCAAAATGTAATTTTTATAAAGTT
1 GGGGTCAAAATGTAATTTTTACAAAGTT
17967550 TGAGGACCTC
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
59 16 0.22
60 32 0.44
61 24 0.33
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.40
Consensus pattern (60 bp):
GGGGTCAAAATGTAATTTTTACAAAGTTCAAGGGTTAAAATGTATATTTTACGAAATTTA
Found at i:17967550 original size:30 final size:30
Alignment explanation
Indices: 17967396--17967550 Score: 134
Period size: 30 Copynumber: 5.2 Consensus size: 30
17967386 ATTTTGGATG
* **
17967396 AGTTTGGGGGTCAAAATGTAATTTTTGTGAA
1 AGTTTAGGGGTCAAAATGTAATTTTT-ACAA
* * ***
17967427 A-TTTGGGGGTTAAAATGTAATTTTGGGAA
1 AGTTTAGGGGTCAAAATGTAATTTTTACAA
* *
17967456 A-TTTAGGTGTCACAATGTAATTTTTTACAA
1 AGTTTAGGGGTCAAAATGTAA-TTTTTACAA
* * * * *
17967486 AGTTCAAGGGTTAAAATGTATTTTTTACGA
1 AGTTTAGGGGTCAAAATGTAATTTTTACAA
*
17967516 AGTTTAGGGGTCAAAATGTAATTTTTATAA
1 AGTTTAGGGGTCAAAATGTAATTTTTACAA
17967546 AGTTT
1 AGTTT
17967551 GAGGACCTCT
Statistics
Matches: 99, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
29 19 0.19
30 66 0.67
31 14 0.14
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (30 bp):
AGTTTAGGGGTCAAAATGTAATTTTTACAA
Found at i:17967888 original size:13 final size:13
Alignment explanation
Indices: 17967865--17967898 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
17967855 AACAGTGGCA
17967865 GTGGT-GCAAGTG
1 GTGGTGGCAAGTG
17967877 GTGGTGGCAAGTG
1 GTGGTGGCAAGTG
*
17967890 GTAGTGGCA
1 GTGGTGGCA
17967899 GCTGCTGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.18, C:0.09, G:0.50, T:0.24
Consensus pattern (13 bp):
GTGGTGGCAAGTG
Found at i:17968721 original size:39 final size:39
Alignment explanation
Indices: 17968601--17969197 Score: 273
Period size: 39 Copynumber: 15.4 Consensus size: 39
17968591 ATCTGCCCTT
* * *
17968601 GGCTCAGGGTAAGAGATTGGCTGATGATGATCTACCCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * * *
17968640 GGCTTGGGGTAAAAGA-T--CGGATGGCTACAATCTGCCCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGG-T--GATCTACCCCA
* * * *
17968679 GGCTCCGAGTAAGAGATTGGCTGATGGTGATCTACCCTA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * **** * *
17968718 GGCTCGGGGTAAAAGATTGGATGGTTACAATCTGCTCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * * * *
17968757 GGATCAGGGTAAGAGATTGGCTAATGGTGATCTACCTCA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * * * * *
17968796 AGCTCGGGGTAAAAGATCGAG-TGACT-GTAATTTGCCCTA
1 GGCTCGGGGTAAAAGATTG-GCTGA-TGGTGATCTACCCCA
* ** * * * *
17968835 AGCTCGACGTAAGAGATTGACTGATGGTGACCT-GCCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * * *
17968873 TGCTCAGGGTAAAAGA-T--CGGATGGCTGCAATCTGCCCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGG-TG--ATCTACCCCA
* * * *
17968912 GGCTCGGGGTAAGAGATTGGCTGATGGTGACCTATCAC-
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * *
17968950 GTGCTCGAGGTAAAAGA-T--CGGATGGCTGCAATCTGCCCCA
1 G-GCTCGGGGTAAAAGATTGGCTGATGG-TG--ATCTACCCCA
* * *
17968990 GGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* *
17969029 GGCTCGGGGTAAAAGA-T--C-GAATGGCGCAATCTGCCCCA
1 GGCTCGGGGTAAAAGATTGGCTG-ATGGTG--ATCTACCCCA
* * * *
17969067 AGCTCGAGGTAAAAGATTAGCTGATGGTGACCTACCCCA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
* * * *
17969106 TGCTCGAGATAAAAGA-T--C-GAATGGCTGCAATCTGCCCCA
1 GGCTCGGGGTAAAAGATTGGCTG-ATGG-TG--ATCTACCCCA
* * * * *
17969145 GGCTCGGGATAATAGATTGGCTGATGGTGACCTGCCCTA
1 GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
*
17969184 GGCTCAGGGTAAAA
1 GGCTCGGGGTAAAA
17969198 AATCGAATGG
Statistics
Matches: 406, Mismatches: 112, Indels: 80
0.68 0.19 0.13
Matches are distributed among these distances:
35 8 0.02
36 24 0.06
37 6 0.01
38 44 0.11
39 279 0.69
40 7 0.02
41 13 0.03
42 24 0.06
43 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GGCTCGGGGTAAAAGATTGGCTGATGGTGATCTACCCCA
Found at i:17968721 original size:78 final size:78
Alignment explanation
Indices: 17968590--17969239 Score: 706
Period size: 78 Copynumber: 8.4 Consensus size: 78
17968580 GTTTGGTTGT
** * * * * *
17968590 AATCTGCCCTTGGCTCAGGGTAAGAGATTGGCTGATGATGATCTACCCCAGGCTTGGGGTAAAAG
1 AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAAG
*
17968655 ATCGGATGGCTAC
66 ATCGGATGGCTGC
* *
17968668 AATCTGCCCCAGGCTCCGAGTAAGAGATTGGCTGATGGTGATCTACCCTAGGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAAG
* * *
17968733 ATTGGATGGTTAC
66 ATCGGATGGCTGC
* * * * * *
17968746 AATCTGCTCCAGGATCAGGGTAAGAGATTGGCTAATGGTGATCTA-CCTCAAGCTCGGGGTAAAA
1 AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCT-AGGCTCGGGGTAAAA
* *
17968810 GATC-GAGTGACTGT
65 GATCGGA-TGGCTGC
* * * * * * * *
17968824 AATTTGCCCTAAGCT-CGACGTAAGAGATTGACTGATGGTGACCTGCCC-ATGCTCAGGGTAAAA
1 AATCTGCCCCAGGCTCCG-GGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAA
17968887 GATCGGATGGCTGC
65 GATCGGATGGCTGC
* * *
17968901 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTA-TC-ACGTGCTCGAGGTAAA
1 AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCTA-G-GCTCGGGGTAAA
17968964 AGATCGGATGGCTGC
64 AGATCGGATGGCTGC
*
17968979 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAAG
*
17969044 ATCGAATGGC-GC
66 ATCGGATGGCTGC
* * * * * * *
17969056 AATCTGCCCCAAGCT-CGAGGTAAAAGATTAGCTGATGGTGACCTACCCCATGCTCGAGATAAAA
1 AATCTGCCCCAGGCTCCG-GGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAA
*
17969120 GATCGAATGGCTGC
65 GATCGGATGGCTGC
* * *
17969134 AATCTGCCCCAGGCT-CGGGATAATAGATTGGCTGATGGTGACCTGCCCTAGGCTCAGGGTAAAA
1 AATCTGCCCCAGGCTCCGGG-TAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAA
* * *
17969198 AATCGAATGGCTGT
65 GATCGGATGGCTGC
* * * *
17969212 GATCTGCCCCATGATCGGGGTAAGAGAT
1 AATCTGCCCCAGGCTCCGGGTAAGAGAT
17969240 CATAATCTTC
Statistics
Matches: 485, Mismatches: 73, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
76 3 0.01
77 133 0.27
78 341 0.70
79 7 0.01
80 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (78 bp):
AATCTGCCCCAGGCTCCGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGGCTCGGGGTAAAAG
ATCGGATGGCTGC
Found at i:17968939 original size:155 final size:156
Alignment explanation
Indices: 17968590--17969239 Score: 779
Period size: 155 Copynumber: 4.2 Consensus size: 156
17968580 GTTTGGTTGT
** * * * * * *
17968590 AATCTGCCCTTGGCTCAGGGTAAGAGATTGGCTGATGATGATCTACCCCAGGCTTGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCCATGCTCGAGGTAAAAG
* *
17968655 ATCGGATGGCTACAATCTGCCCCAGGCTCCGA-GTAAGAGATTGGCTGATGGTGATCTACCCTAG
66 ATCGGATGGCTGCAATCTGCCCCAGGCT-CGAGGTAAGAGATTGGCTGATGGTGACCTACCCTAG
* * * * *
17968719 GCTCGGGGTAAAAGATTGGATGGTTAC
130 GCTCAGGGTAAAAGATCGAATGGCTGC
* * * * * * * *
17968746 AATCTGCTCCAGGATCAGGGTAAGAGATTGGCTAATGGTGATCTACCTCAAGCTCGGGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCCATGCTCGAGGTAAAAG
* * * * * * * * *
17968811 ATC-GAGTGACTGTAATTTGCCCTAAGCTCGACGTAAGAGATTGACTGATGGTGACCTGCCC-AT
66 ATCGGA-TGGCTGCAATCTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGGTGACCTACCCTAG
*
17968874 GCTCAGGGTAAAAGATCGGATGGCTGC
130 GCTCAGGGTAAAAGATCGAATGGCTGC
* * *
17968901 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTATCACGTGCTCGAGGTAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCCATGCTCGAGGTAAAAG
*
17968966 ATCGGATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGG
66 ATCGGATGGCTGCAATCTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGGTGACCTACCCTAGG
*
17969031 CTCGGGGTAAAAGATCGAATGGC-GC
131 CTCAGGGTAAAAGATCGAATGGCTGC
* * * * *
17969056 AATCTGCCCCAAGCTCGAGGTAAAAGATTAGCTGATGGTGACCTACCCCATGCTCGAGATAAAAG
1 AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCCATGCTCGAGGTAAAAG
* * *
17969121 ATCGAATGGCTGCAATCTGCCCCAGGCTCG-GGATAATAGATTGGCTGATGGTGACCTGCCCTAG
66 ATCGGATGGCTGCAATCTGCCCCAGGCTCGAGG-TAAGAGATTGGCTGATGGTGACCTACCCTAG
* *
17969185 GCTCAGGGTAAAAAATCGAATGGCTGT
130 GCTCAGGGTAAAAGATCGAATGGCTGC
* * *
17969212 GATCTGCCCCATGATCGGGGTAAGAGAT
1 AATCTGCCCCAGGCTCGGGGTAAGAGAT
17969240 CATAATCTTC
Statistics
Matches: 424, Mismatches: 64, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
154 2 0.00
155 272 0.64
156 150 0.35
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (156 bp):
AATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCCATGCTCGAGGTAAAAG
ATCGGATGGCTGCAATCTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGGTGACCTACCCTAGG
CTCAGGGTAAAAGATCGAATGGCTGC
Found at i:17969108 original size:233 final size:231
Alignment explanation
Indices: 17968608--17969239 Score: 788
Period size: 233 Copynumber: 2.7 Consensus size: 231
17968598 CTTGGCTCAG
* * * * *
17968608 GGTAAGAGATTGGCTGATGATGATCTACCCCAGGCTTGGGGTAAAAGATCGGATGGCTACAATCT
1 GGTAAGAGATT-GCTGATGGTGACCTACCCCATGC-TCGGGTAAAAGATCGGATGGCTGCAATCT
* * * * *
17968673 GCCCCAGGCTCCGAGTAAGAGATTGGCTGATGGTGATCTACCCTAGGCTCGGGGTAAAAGATTGG
64 GCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTA-GCTCGAGGTAAAAGATCGG
* * * * *
17968738 ATGGTTACAATCTGCTCCAGGATCAGGGTAAGAGATTGGCTAATGGTGATCTACCTCAAGCTCGG
128 ATGGCTGCAATCTGCCCCAGGATCGGGGTAAGAGATTGGCTAATGGTGACCTACCTCAAGCTCGG
* * * *
17968803 GGTAAAAGATCGAGTGACTGTAATTTGCCCTAAGCTCGA
193 GGTAAAAGATCGAATGACTGCAATCTGCCCCAAGCTCGA
* *
17968842 CGTAAGAGATTGACTGATGGTGACCT-GCCCATGCTCAGGGTAAAAGATCGGATGGCTGCAATCT
1 GGTAAGAGATTG-CTGATGGTGACCTACCCCATGCTC-GGGTAAAAGATCGGATGGCTGCAATCT
*
17968906 GCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTATCACGT-GCTCGAGGTAAAAGATCG
64 GCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTA-C-CCTAGCTCGAGGTAAAAGATCG
* * *
17968970 GATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACC-CTAGGCTC
127 GATGGCTGCAATCTGCCCCAGGATCGGGGTAAGAGATTGGCTAATGGTGACCTACCTC-AAGCTC
*
17969034 GGGGTAAAAGATCGAATGGC-GCAATCTGCCCCAAGCTCGA
191 GGGGTAAAAGATCGAATGACTGCAATCTGCCCCAAGCTCGA
* * *
17969074 GGTAAAAGATTAGCTGATGGTGACCTACCCCATGCTCGAGATAAAAGATCGAATGGCTGCAATCT
1 GGTAAGAGATT-GCTGATGGTGACCTACCCCATGCTCG-GGTAAAAGATCGGATGGCTGCAATCT
* * * *
17969139 GCCCCAGGCTCGGGATAATAGATTGGCTGATGGTGACCTGCCCTAGGCTC-AGGGTAAAAAATCG
64 GCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTA-GCTCGA-GGTAAAAGATCG
* ** *
17969203 AATGGCTGTGATCTGCCCCATGATCGGGGTAAGAGAT
127 GATGGCTGCAATCTGCCCCAGGATCGGGGTAAGAGAT
17969240 CATAATCTTC
Statistics
Matches: 346, Mismatches: 41, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
231 2 0.01
232 44 0.13
233 276 0.80
234 22 0.06
235 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (231 bp):
GGTAAGAGATTGCTGATGGTGACCTACCCCATGCTCGGGTAAAAGATCGGATGGCTGCAATCTGC
CCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGACCTACCCTAGCTCGAGGTAAAAGATCGGATG
GCTGCAATCTGCCCCAGGATCGGGGTAAGAGATTGGCTAATGGTGACCTACCTCAAGCTCGGGGT
AAAAGATCGAATGACTGCAATCTGCCCCAAGCTCGA
Found at i:17981597 original size:30 final size:30
Alignment explanation
Indices: 17981563--17981639 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
17981553 ATTTTTAAGG
*
17981563 AATTTAGGGTCAAAAATGAAATTTTTGGAA
1 AATTTAGGGTCAAAAATGAAACTTTTGGAA
* *
17981593 AATTT-GGGAT-TAAAATCAAACTTTTGGAA
1 AATTTAGGG-TCAAAAATGAAACTTTTGGAA
* *
17981622 AATTTAAGGTCGAAAATG
1 AATTTAGGGTCAAAAATG
17981640 TGACTTTCGA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 25 0.66
30 13 0.34
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.32
Consensus pattern (30 bp):
AATTTAGGGTCAAAAATGAAACTTTTGGAA
Found at i:17981731 original size:30 final size:31
Alignment explanation
Indices: 17981691--17981910 Score: 189
Period size: 30 Copynumber: 7.4 Consensus size: 31
17981681 GCTCAAGGGC
* *
17981691 AAATGGTAATTTTGGATG-AGTTTGAGGGTCG
1 AAAT-GTAATTTTTGATGAAGTTTGAGGGTCA
*
17981722 AAATGTAATTTTTG-TGAAATTT-AGGGGTCA
1 AAATGTAATTTTTGATGAAGTTTGA-GGGTCA
17981752 AAATGTAATTTTTGA-GAAGTTT-AGGGTCA
1 AAATGTAATTTTTGATGAAGTTTGAGGGTCA
*
17981781 AAATGTAACTTTTGCA--AAGTTTGA-GGTCA
1 AAATGTAATTTTTG-ATGAAGTTTGAGGGTCA
* *
17981810 AAATTTAATTTTTTG-TGAAGTTTGAGGGTTA
1 AAATGTAA-TTTTTGATGAAGTTTGAGGGTCA
* * *
17981841 AAATGTAATTTTTGA-GAAGTTCGGGGGTTA
1 AAATGTAATTTTTGATGAAGTTTGAGGGTCA
* * *
17981871 AAATGT-A-TTTTGCA--AAGTTCGAGAGTTA
1 AAATGTAATTTTTG-ATGAAGTTTGAGGGTCA
17981899 AAATGTAATTTT
1 AAATGTAATTTT
17981911 GCAAAGTTCG
Statistics
Matches: 163, Mismatches: 13, Indels: 27
0.80 0.06 0.13
Matches are distributed among these distances:
28 23 0.14
29 43 0.26
30 82 0.50
31 15 0.09
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.39
Consensus pattern (31 bp):
AAATGTAATTTTTGATGAAGTTTGAGGGTCA
Found at i:17981844 original size:89 final size:88
Alignment explanation
Indices: 17981650--17981910 Score: 257
Period size: 89 Copynumber: 2.9 Consensus size: 88
17981640 TGACTTTCGA
* * * * * *
17981650 AAATTTGGGGGT-AAAATGGTAATTTTT-AGATGCTCAAGGG-C-AAATGGTAATTTTGGATGAG
1 AAATTTAGGGGTCAAAAT-GTAATTTTTGAGAAGTTCGAGGGTCAAAAT-GT-ATTTTGCA-AAG
*
17981711 TTTGAGGGTCGAAATGTAA-TTTTTGTG
62 TTTGA-GGTCAAAATGTAATTTTTTGTG
*
17981738 AAATTTAGGGGTCAAAATGTAATTTTTGAGAAGTT-TAGGGTCAAAATGTAACTTTTGCAAAGTT
1 AAATTTAGGGGTCAAAATGTAATTTTTGAGAAGTTCGAGGGTCAAAATGT-A-TTTTGCAAAGTT
*
17981802 TGAGGTCAAAATTTAATTTTTTGTG
64 TGAGGTCAAAATGTAATTTTTTGTG
* * * * *
17981827 AAGTTT-GAGGGTTAAAATGTAATTTTTGAGAAGTTCGGGGGTTAAAATGTATTTTGCAAAGTTC
1 AAATTTAG-GGGTCAAAATGTAATTTTTGAGAAGTTCGAGGGTCAAAATGTATTTTGCAAAGTTT
*
17981891 GAGAGTTAAAATGTAATTTT
65 GAG-GTCAAAATGTAATTTT
17981911 GCAAAGTTCG
Statistics
Matches: 148, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
88 51 0.34
89 76 0.51
90 21 0.14
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (88 bp):
AAATTTAGGGGTCAAAATGTAATTTTTGAGAAGTTCGAGGGTCAAAATGTATTTTGCAAAGTTTG
AGGTCAAAATGTAATTTTTTGTG
Found at i:17981909 original size:29 final size:30
Alignment explanation
Indices: 17981722--17981920 Score: 171
Period size: 29 Copynumber: 6.8 Consensus size: 30
17981712 TTGAGGGTCG
* * * *
17981722 AAATGTAATTTTTGTGAAATTTAG-GGGTCA
1 AAATGTAATTTTTG-CAAAGTTCGAGGGTTA
* *
17981752 AAATGTAATTTTTG-AGAAGTT-TAGGGTCA
1 AAATGTAATTTTTGCA-AAGTTCGAGGGTTA
* * *
17981781 AAATGTAACTTTTGCAAAGTTTGA-GGTCA
1 AAATGTAATTTTTGCAAAGTTCGAGGGTTA
* ** *
17981810 AAATTTAATTTTTTGTGAAGTTTGAGGGTTA
1 AAATGTAA-TTTTTGCAAAGTTCGAGGGTTA
*
17981841 AAATGTAATTTTTG-AGAAGTTCGGGGGTTA
1 AAATGTAATTTTTGCA-AAGTTCGAGGGTTA
*
17981871 AAATGT-A-TTTTGCAAAGTTCGAGAGTTA
1 AAATGTAATTTTTGCAAAGTTCGAGGGTTA
17981899 AAATGTAA-TTTTGCAAAGTTCG
1 AAATGTAATTTTTGCAAAGTTCG
17981921 GGACCTCCTG
Statistics
Matches: 145, Mismatches: 15, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
28 24 0.17
29 57 0.39
30 53 0.37
31 11 0.08
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (30 bp):
AAATGTAATTTTTGCAAAGTTCGAGGGTTA
Found at i:17982815 original size:254 final size:253
Alignment explanation
Indices: 17982353--17983139 Score: 663
Period size: 254 Copynumber: 3.0 Consensus size: 253
17982343 TTTGGCAGGA
* * * *
17982353 AGATTCTTGGTTGATTTCATCAATTTTGTTTTTTTTCTCAAACATAAGAGGGCAACTTGAATGCT
1 AGATTCTTCGTTGATTTCATCAATTTAGTTTTTTTTCTCAAACATAAGACGCCAACTTGAATGCT
* * *
17982418 ACGAGTAAATAAAAATAAAGGGACCAAATCCACGCAAATCAATATGTATAAGGACTATTCTTAGA
66 ACGAGTAAATAAAAATAAAGGGACCAAATCCACACAAATCAATAGGTACAAGGACTATTCTTAGA
* * * *
17982483 ATTTAACCTAAAATAATATTTGTCTCACTCGACCTTACACGTGGCATTATTGATATAAAAAGTAA
131 ATTTAACCTAAAATAATATTTATCTCACTCGACCTGACACGCGACATTATTGATATAAAAAGTAA
*
17982548 TAAATTCTTCTTTTTCTTAAAACTACCATATTAAGCAGCAGTTTCAAGATAATTGCATG
196 TAAATTCTTCTTTTT-TTAAAACTACCATATTAAGCAACAGTTTCAAGATAATTGCATG
* * * *
17982607 AGATTCTTCTTTGATTTCATCGATTTAG-TTTTTTTCTCAAACTTAAAGACTCCAA-TTAGAATG
1 AGATTCTTCGTTGATTTCATCAATTTAGTTTTTTTTCTCAAACAT-AAGACGCCAACTT-GAATG
* ** *
17982670 CTACGAGTAAATAAAAATATAGGGACCAAATCTGCACAAATCTAA-AGGTACAAGGACTTTTCTT
64 CTACGAGTAAATAAAAATAAAGGGACCAAATCCACACAAATC-AATAGGTACAAGGACTATTCTT
* * *
17982734 AGAATTTAACCTAAAATAATATTTATTTCACTCGACTCTGACACGCGACGTTCTTGATATAAAAA
128 AGAATTTAACCTAAAATAATATTTATCTCACTCGAC-CTGACACGCGACATTATTGATATAAAAA
* * * * * *
17982799 -TAA-AAATAAT-TTCTTTTTTTTAAACTGCTATCTTACGCAACAGTTTCAATATAATTGCATGT
192 GTAATAAAT--TCTTCTTTTTTTAAAACTACCATATTAAGCAACAGTTTCAAGATAATTGCA--T
17982861 G
253 G
* * * ** * *
17982862 ACTGAGCTACTCTTATTTGGTAGGGAGATTCTTCTTTGATTTCATCGATATTTTTTTTATCAATC
1 A--GA--T--TC----TTCGT----TGA-T-TTCATCAATTT-A--G---TTTTTTTTCTCAAAC
* * * * * * * *
17982927 TTAAGAGGCTAATTTGAATGCTAAGAGTAAATAAAAACAGAGGGACCAAATCCACGCAAATCAAT
44 ATAAGACGCCAACTTGAATGCTACGAGTAAATAAAAATAAAGGGACCAAATCCACACAAATCAAT
* * * * * *
17982992 AAGTACAAGGACTATTCTTAGAATTTAACGTAAAATAATATTTGTTTCACTCGGCTCTGATACGC
109 AGGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTATCTCACTCGAC-CTGACACGC
** * * * **
17983057 GGTATTCTTGATATAAAAA-TAATAAATTCGTTTTTTTATCTTAAAAC-AGCCATATTATGCGGC
173 GACATTATTGATATAAAAAGTAATAAATTC-TTCTTTT-T-TTAAAACTA-CCATATTAAGCAAC
* *
17983120 AGTTTCAAGGTATTTGCATG
234 AGTTTCAAGATAATTGCATG
17983140 TGACTGAGTT
Statistics
Matches: 429, Mismatches: 65, Indels: 54
0.78 0.12 0.10
Matches are distributed among these distances:
253 55 0.13
254 135 0.31
255 29 0.07
257 2 0.00
259 1 0.00
261 2 0.00
265 3 0.01
269 2 0.00
270 1 0.00
271 9 0.02
272 1 0.00
274 1 0.00
276 3 0.01
277 126 0.29
278 28 0.07
279 1 0.00
280 30 0.07
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (253 bp):
AGATTCTTCGTTGATTTCATCAATTTAGTTTTTTTTCTCAAACATAAGACGCCAACTTGAATGCT
ACGAGTAAATAAAAATAAAGGGACCAAATCCACACAAATCAATAGGTACAAGGACTATTCTTAGA
ATTTAACCTAAAATAATATTTATCTCACTCGACCTGACACGCGACATTATTGATATAAAAAGTAA
TAAATTCTTCTTTTTTTAAAACTACCATATTAAGCAACAGTTTCAAGATAATTGCATG
Found at i:17983816 original size:57 final size:57
Alignment explanation
Indices: 17983728--17983842 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
17983718 GAGATTCTTT
17983728 GTTGATTTCATCAATTTTGGTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAA
1 GTTGATTTCATCAATTTTGGTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAA
*
17983785 GTTGATTTCATCAATTTTGTTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAA
1 GTTGATTTCATCAATTTTGGTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAA
17983842 G
1 G
17983843 AGTAAATAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (57 bp):
GTTGATTTCATCAATTTTGGTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAA
Found at i:17984634 original size:891 final size:889
Alignment explanation
Indices: 17982897--17984675 Score: 2420
Period size: 891 Copynumber: 2.0 Consensus size: 889
17982887 AGATTCTTCT
* * *
17982897 TTGATTTCATCGATATTTTTTTTATCAATCTTAAGAGGCTAATTTGAATGCTAAGAGTAAATAAA
1 TTGATTTCATCAATATTTTTTTTATCAATCTTAAGAGGCCAACTTGAATGCTAAGAGTAAATAAA
* *
17982962 AACAGAGGGACCAAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACGTAAAA
66 AACAGAGCGACCAAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAA
** * * *
17983027 TAATATTTGTTTCACTCGGCTCTGATACGCGGTATTCTTGATATAAAAATAATAAATTCGTTTTT
131 TAATATTTGTTTCACTCAACTATGACACGCGGCATTCTTGATATAAAAATAATAAATTCGTTTTT
* ** * * *
17983092 TTATCTTAAAACAGCCATATTATGCGGCAGTTTCAAGGTATTTGCATGTGACTGAGTTGCTTGTA
196 TTATCTTAAAACAGCCATATTACGCAACAGTTTCAAGGTAATTGAATGT-ACTGAGCTGCTTGTA
* * * * *
17983157 TTTGGCAGGGAGATTCTTCGTTGATTTCATTAATTTTCTTTGTTTTCTAAAACTTAAGACGCCAA
260 TTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTCATTCTTTTCTAAAACTTAAAACGCCAA
* *
17983222 TTTGAATGTTATGAGTAAATAAAAATAGAGGGATCAAATCCTCGCAAATGAATAAATACAAGGAC
325 TTTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAATCCTCGCAAATCAATAAATACAAGGAC
*
17983287 TATTCTTAAAATTTAACCTAAAATAATATTTGTTTCTTTCGACCCTGACATAGGACGTTATTAAT
390 TATTCTTAAAATTTAACCTAAAATAATATTTGTTTCTTTCAACCCTGACATAGGACGTTATTAAT
* * * * * *
17983352 ATAAACAAATATTTTCATTTCTATTTTAAAGTTTCCATCTTACGTGGCAGCTTCAAGATAATTGC
455 ATAAACAAATATTTTCATTTCAATTTTAAAGCTGCAATCTTACGCGGCAACTTCAAGATAATTGC
** * * *
17983417 ATGTGATTGAGCTGCTTGTATTTGACTGGGAGATTCTTCTTTGATTTTATTGATTTTTTTTCTCA
520 ATGTGACAGAGCTACTTGTATTTGACTGGGAGATTCTTCTTTGATTTCATCGATTTTTTTTCTCA
* *
17983482 AACTTAAGACCCCAATTTGAACGCTGCAAAAAAATAAAAAATAAAGGGACCAAATCTGTGCAAAT
585 AACTTAAGACCCCAAGTTGAACGCTACAAAAAAATAAAAAATAAAGGGACCAAATCTGTGCAAAT
* * * *
17983547 CAATATGTACAATGACTATTCTTAGAATTTAACCTAAAATAATAATTGTTTCACTCGACTCTGAC
650 CAATAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATAATTGTTTCACTCGACACTGAC
* * * * *
17983612 ATGCGGCATTCTTGATATAAAAAATAAAAAAATTACCTTAAACCTACCATCTTAGGCAATGGTTT
715 ACGCGACATTCTTGACATAAAAAATAAAAAAATTACCTTAAAACTACCATCTTAAGCAATGGTTT
*
17983677 CAAGATAATTACATGTGATTGGTCTGCTTGTATTTGGCAAGGAGATTCTTTGTTGATTTCATCAA
780 CAAGATAATTACATCTGATTGGTCTGCTTGTATTTGGCAAGGAGATTCTTTGTTGATTTCATCAA
* * *
17983742 TTTTG-GTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAAG
845 TTTTGTGTTTTTTCACAAACATAAGAGGCCAACTTGAATGCTAAG
* *
17983786 TTGATTTCATCAATTTTGTTTTTTTCTCTAA-CTTAAGAGGCCAACTTGAATGCTAAGAGTAAAT
1 TTGATTTCATCAA-TAT-TTTTTTTATC-AATCTTAAGAGGCCAACTTGAATGCTAAGAGTAAAT
* * *
17983850 AAAAATAGAGCGACCGAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
63 AAAAACAGAGCGACCAAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
17983915 AAATAATATTTGTTTCACTCAACTATGACACGCGGCATTCTTGATATAAAAAAATAATAAATTCA
128 AAATAATATTTGTTTCACTCAACTATGACACGCGGCATTCTTGATAT--AAAAATAATAAATTC-
* * * *
17983980 TTTTTTTTATCTTAAAACTGCCATATTACGCAACAGTTTCAAGTTAATTGAATGT-TTGAGCTGC
190 GTTTTTTTATCTTAAAACAGCCATATTACGCAACAGTTTCAAGGTAATTGAATGTACTGAGCTGC
*
17984044 TTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTT-ATTCTTTTCTAAAACTTAAAAT
255 TTGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTCATTCTTTTCTAAAACTTAAAAC
*
17984108 GCCAATTTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAAT-CTGCGCAGATCAAT-AA-AC
320 GCCAATTTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAATCCT-CGCAAATCAATAAATAC
* * * * *
17984170 AAGGACTATTCTTAGAATTTAACCTAAACTAATATTTGTTTCTTTCAACTCTTACA-CGCGACGT
384 AAGGACTATTCTTAAAATTTAACCTAAAATAATATTTGTTTCTTTCAACCCTGACATAG-GACGT
* * * * *
17984234 TCTTGATATAAA-AAATATTTT-TTGTTCAATTTTAAAGCTGCAATCTTACGCGGCAATTTGAAG
448 TATTAATATAAACAAATATTTTCAT-TTCAATTTTAAAGCTGCAATCTTACGCGGCAACTTCAAG
* *
17984297 ATAATTGCATGTGACAGAGCTACTTGTGTTTGGC-GGCGAGATTCTTCTTTGATTTCATCGATTT
512 ATAATTGCATGTGACAGAGCTACTTGTATTTGACTGG-GAGATTCTTCTTTGATTTCATCGATTT
* * ** * * * * *
17984361 TTTTTTTCAAACTTAATAGGCCAAGTTGAATGCTACGAATAAAT-AGAAATAGAGGGACCAAATC
576 TTTTTCTCAAACTTAAGACCCCAAGTTGAACGCTACAAAAAAATAAAAAATAAAGGGACCAAATC
* * *
17984425 TGTGCAAATCTATAAGTACAAGGACTATTCTTTGAATTTAAACTAAAATAATATTTGTTTCACTC
641 TGTGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATAATTGTTTCACTC
* ** *
17984490 GACACTGACACGCGACATTCTTGACAT-AAAAATAATAAATTATTTTTGTCTTAAAACTTCCATC
706 GACACTGACACGCGACATTCTTGACATAAAAAATAA-AAA--A--ATTACCTTAAAACTACCATC
** * *
17984554 TTAAGCGTTGGTTTCAAGATAGTTACATCTGATTGAG-C-GCCTTGTATTTGG-TAGGAAGATTC
766 TTAAGCAATGGTTTCAAGATAATTACATCTGATTG-GTCTG-CTTGTATTTGGCAAGG-AGATTC
* *
17984616 TTTGTTGATTTCATCAATTTTGTTTTTTTTCACAAACATAAGAGGCCAATTTGAATGCTA
828 TTTGTTGATTTCATCAATTTTGTGTTTTTTCACAAACATAAGAGGCCAACTTGAATGCTA
17984676 CGAGTAAATA
Statistics
Matches: 776, Mismatches: 95, Indels: 35
0.86 0.10 0.04
Matches are distributed among these distances:
886 8 0.01
887 106 0.14
888 130 0.17
889 81 0.10
890 10 0.01
891 297 0.38
892 82 0.11
893 15 0.02
894 47 0.06
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (889 bp):
TTGATTTCATCAATATTTTTTTTATCAATCTTAAGAGGCCAACTTGAATGCTAAGAGTAAATAAA
AACAGAGCGACCAAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAA
TAATATTTGTTTCACTCAACTATGACACGCGGCATTCTTGATATAAAAATAATAAATTCGTTTTT
TTATCTTAAAACAGCCATATTACGCAACAGTTTCAAGGTAATTGAATGTACTGAGCTGCTTGTAT
TTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTCATTCTTTTCTAAAACTTAAAACGCCAAT
TTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAATCCTCGCAAATCAATAAATACAAGGACT
ATTCTTAAAATTTAACCTAAAATAATATTTGTTTCTTTCAACCCTGACATAGGACGTTATTAATA
TAAACAAATATTTTCATTTCAATTTTAAAGCTGCAATCTTACGCGGCAACTTCAAGATAATTGCA
TGTGACAGAGCTACTTGTATTTGACTGGGAGATTCTTCTTTGATTTCATCGATTTTTTTTCTCAA
ACTTAAGACCCCAAGTTGAACGCTACAAAAAAATAAAAAATAAAGGGACCAAATCTGTGCAAATC
AATAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATAATTGTTTCACTCGACACTGACA
CGCGACATTCTTGACATAAAAAATAAAAAAATTACCTTAAAACTACCATCTTAAGCAATGGTTTC
AAGATAATTACATCTGATTGGTCTGCTTGTATTTGGCAAGGAGATTCTTTGTTGATTTCATCAAT
TTTGTGTTTTTTCACAAACATAAGAGGCCAACTTGAATGCTAAG
Found at i:17985366 original size:281 final size:282
Alignment explanation
Indices: 17983785--17985499 Score: 1634
Period size: 281 Copynumber: 6.1 Consensus size: 282
17983775 TGAATGCTAA
* * *
17983785 GTTGATTTCATCAATTTTG--TTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAAGAGTAA
1 GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
* *
17983848 ATAAAAATAGAGCGACCGAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
66 ATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
*
17983913 TAAAATAATATTTGTTTCACTCAACTA-TGACACGCGGCATTCTTGATATAAAAAAATAATAAAT
131 TAAAATAATATTTGTTTCACTCAAC-ACTGACACGCGACATTCTTGATAT-AAAAAA-AAT-AAT
* * * * * * **
17983977 TCATTTTTTTTATCTTAAAACTGCCATATTACGCAACAGTTTCAAGTTAATTG-A-ATGTTTGAG
192 T--TTTTTTCTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAG
* * *
17984040 CTGCTTGTATTTGGCAAGGAGATTCTTC
255 CTACTTGTATTTGGCAGGGAGATTTTTC
* * * * * *
17984068 GTTGATTTCATCAA-TTT-TATTCTTTTCTAAAACTTAAAATGCCAATTTGAATGCTATGAGTAA
1 GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
* * *
17984131 ATAAAAATAGAGGGATCAAATCTGCGCAGATCAATAA--ACAAGGACTATTCTTAGAATTTAACC
66 ATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
* ** * * *
17984194 TAAACTAATATTTGTTTCTTTCAACTCTTACACGCGACGTTCTTGATAT--AAAAAAT-ATTTTT
131 TAAAATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGATATAAAAAAAATAATTTTT
* * * * * ** * * *
17984256 TGTTCAATTTTAAAGCTGCAATCTTACGCGGCAATTTGAAGATAATTGCATGTGACAGAGCTACT
196 T-TTCTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAGCTACT
* *
17984321 TGTGTTTGGC-GGCGAGATTCTTC
260 TGTATTTGGCAGG-GAGATTTTTC
* * * * *
17984344 TTTGATTTCATCGA-----TTTTTTTTT-TCAAACTTAATAGGCCAAGTTGAATGCTACGAATAA
1 GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
* * * * * *
17984403 ATAGAAATAGAGGGACCAAATCTGTGCAAATCTATAAGTACAAGGACTATTCTTTGAATTTAAAC
66 ATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
* * * * *
17984468 TAAAATAATATTTGTTTCACTCGACACTGACACGCGACATTCTTGACATAAAAATAATAAATTAT
131 TAAAATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGATATAAAAAAAATAATTTTT
* * * ** * * * **
17984533 TTT-TGTCTTAAAACTTCCATCTTAAGCGTTGGTTTCAAGATAGTTACATCTGATTGAGCGCCTT
196 TTTCTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAGCTACTT
* *
17984597 GTATTTGGTAGGAAGATTCTTT-
261 GTATTTGGCAGGGAGATT-TTTC
* *
17984619 GTTGATTTCATCAATTTTG-TTTTTTTTCACAAACATAAGAGGCCAATTTGAATGCTACGAGTAA
1 GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
** * * *
17984683 ATAAAAATAGAGGGATCC-AATCTACGCAAATCAATATGTACAAGGTCTATTCTTAAAATTTAAC
66 ATAAAAATAGAGGGA-CCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAAC
* * * *
17984747 CTAAAATAATATTTGTTTCACTCGACATTGACACAC-AGCGTTCTTGATATAAAAAATAATTAAT
130 CTAAAATAATATTTGTTTCACTCAACACTGACACGCGA-CATTCTTGATATAAAAAA-AA-TAAT
* * * * * *
17984811 TCTTTTTTTTAATCTTAGAACTGCCATATTACGCGGCGATTTCAAGATAATTGCATGTGACTGAG
192 T-TTTTTTCT-ATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAG
* ** * *
17984876 GTGTTTGTATTTTGCAGAGAGATTCTTT-
255 CTACTTGTATTTGGCAGGGAGATT-TTTC
* * * * *
17984904 ATTGATTTCATCAATTTTCTTTTCTTTTCTTTTTTTGTCAAACTTAAGAAGCCAATTTTAATGCT
1 GTTGATTTCATCAA------TTT-TGTT-TTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCT
* * * * * * *
17984969 ACGAGTAAATAAAAATAAAGGGATCAAATCCGCACAAATCAATAAATTCAAGGACTACTATTAGA
58 ACGAGTAAATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGA
* ** ** * * *
17985034 ATTTAACCAAAAATAATATTTGTTTCTTTTGACTCTAACACGCAACATTCTTGATATAAAAAAAA
123 ATTTAACCTAAAATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGATATAAAAAAAA
* * * * *
17985099 T-ATTTCTTTTCTATTTTAAAGCTGCCATCTTACACGACGGTTTCAAGATAACTGCATCTGACTG
188 TAATTTTTTTTCTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTG
* *
17985163 AGCCACTTGTATTTGGCGGGGAGATTTTTC
253 AGCTACTTGTATTTGGCAGGGAGATTTTTC
* * * * *
17985193 TTTGATTTCATCGATTTTGTTTTTTTTTCTCAAACTTAATAGGCCAAGTTGAATGCTACGAATAA
1 GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
* * * *
17985258 ATAAAAATAGAGGGACCAAATCCGTGCAAATCTATAAGTACAAGGATTATTCTTAGAATTTAAAC
66 ATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
* * * * * *
17985323 TAAAGTAATATTTGTTTCACTCAACACTGACATGTGGCATTCTTGATGTAAAAAATAGTAAATTA
131 TAAAATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGATATAAAAAA-AAT-AATT-
* * * * * * * *
17985388 TTTTTTTTATCTTAAAATTGCTATCTTAAGC-ATTGGTTTCAAGATAGTTACATGTGACTGAGCT
193 TTTTTTCTATCTTAAAACTGCCATCTTACGCGA-CGGTTTCAAGATAATTGCATCTGACTGAGCT
* * *
17985452 TCTTGTATTTGGTAGGAAGATTCTTT-
257 ACTTGTATTTGGCAGGGAGATT-TTTC
*
17985478 GTTGATTTAATCAATTTT-TTTT
1 GTTGATTTCATCAATTTTGTTTT
17985500 CTCAAACATA
Statistics
Matches: 1155, Mismatches: 232, Indels: 89
0.78 0.16 0.06
Matches are distributed among these distances:
272 62 0.05
273 11 0.01
274 100 0.09
275 71 0.06
276 52 0.05
277 8 0.01
278 4 0.00
279 9 0.01
280 132 0.11
281 205 0.18
282 12 0.01
283 91 0.08
284 9 0.01
285 156 0.14
286 3 0.00
288 3 0.00
289 74 0.06
290 6 0.01
291 6 0.01
292 2 0.00
293 4 0.00
294 134 0.12
295 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (282 bp):
GTTGATTTCATCAATTTTGTTTTTTTTTCTCAAACTTAAGAGGCCAATTTGAATGCTACGAGTAA
ATAAAAATAGAGGGACCAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACC
TAAAATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGATATAAAAAAAATAATTTTT
TTTCTATCTTAAAACTGCCATCTTACGCGACGGTTTCAAGATAATTGCATCTGACTGAGCTACTT
GTATTTGGCAGGGAGATTTTTC
Found at i:17985447 original size:574 final size:563
Alignment explanation
Indices: 17983799--17985501 Score: 1762
Period size: 574 Copynumber: 3.0 Consensus size: 563
17983789 ATTTCATCAA
* * *
17983799 TTTTGTTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAAGAGTAAATAAAAATAGAGCGAC
1 TTTT-TTTTTTT-TCAAACTTAAGAGGCCAACTTGAATGCTACGAGTAAATAAAAATAGAGGGAC
*
17983864 CGAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTT
64 CAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTT
* * * *
17983929 TCACTCAACTATGACACGCGGCATTCTTGATATAAAAAAATAATAAATTCATTTTTTTTATCTTA
129 TCACTCGACTCTGACACGCGACATTCTTGATAT-AAAAAA-AAT-AA-T--TTATTTTTATCTTA
* * * * * * * * *
17983994 AAACTGCCATATTACGCAACAGTTTCAAGTTAATTG-A-ATGTTTGAGCTGCTTGTATTTGGCAA
188 AAACTGCCATCTTACACGACGGTTTCAAGATAATTGCATCTGATTGAGC-CCTTGTATTTGGCAG
* * * * * *
17984057 GGAGATTCTTCGTTGATTTCATCAATTT-TATTCTTTTCTAAAACTTAAAATGCCAATTTGAATG
252 GGAGATTTTTCGTTGATTTCATCATTTTGTTTTTTTTTCTCAAACTTAAAAGGCCAATTTGAATG
* * * *
17984121 CTATGAGTAAATAAAAATAGAGGGATCAAATCTGCGCAGATCAATAA--ACAAGGACTATTCTTA
317 CTACGAGTAAATAAAAATAGAGGGACCAAATCTGCGCAAATCAATAAGTACAAGGATTATTCTTA
* ** * * *
17984184 GAATTTAACCTAAACTAATATTTGTTTCTTTCAACTCTTACACGCGACGTTCTTGATATAAAAAA
382 GAATTTAACCTAAAATAATATTTGTTTCACTCAACACTGACACGCGGCGTTCTTGATATAAAAAA
* ** * * * *
17984249 TAT--TTTTTGTTCAATTTTAAAGCTGCAATCTTACGCGGCAATTTGAAGATAATTGCATGTGAC
447 TATAATTTTTTTTTTATCTTAAAACTGCAATCTTACGCGGCGATTTCAAGATAATTGCATGTGAC
* * * * *
17984312 AGAGCTACTTGTGTTTGGCGGCGAGATTCTTCTTTGATTTCATCGA---------
512 TGAGCT-TTTGTATTTGGCAG-GAGATTCTT-TTTGATTTCATCAATTTTTTTTC
* * * *
17984358 --TTTTTTTTTTCAAACTTAATAGGCCAAGTTGAATGCTACGAATAAATAGAAATAGAGGGACCA
1 TTTTTTTTTTTTCAAACTTAAGAGGCCAACTTGAATGCTACGAGTAAATAAAAATAGAGGGACCA
* * * * *
17984421 AATCTGTGCAAATCTATAAGTACAAGGACTATTCTTTGAATTTAAACTAAAATAATATTTGTTTC
66 AATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTC
* * * * * *
17984486 ACTCGACACTGACACGCGACATTCTTGACATAAAAATAATAAATTATTTTTGTCTTAAAACTTCC
131 ACTCGACTCTGACACGCGACATTCTTGATATAAAAAAAATAATTTATTTTTATCTTAAAACTGCC
** * * * *
17984551 ATCTTA-AGCGTTGGTTTCAAGATAGTTACATCTGATTGAGCGCCTTGTATTTGGTAGGAAGATT
196 ATCTTACA-CGACGGTTTCAAGATAATTGCATCTGATTGAGC-CCTTGTATTTGGCAGGGAGATT
* * *
17984615 CTTT-GTTGATTTCATCAATTTTG-TTTTTTTTCACAAACATAAGAGGCCAATTTGAATGCTACG
259 -TTTCGTTGATTTCATC-ATTTTGTTTTTTTTTCTCAAACTTAAAAGGCCAATTTGAATGCTACG
* * *
17984678 AGTAAATAAAAATAGAGGGATCC-AATCTACGCAAATCAATATGTACAAGG-TCTATTCTTAAAA
322 AGTAAATAAAAATAGAGGGA-CCAAATCTGCGCAAATCAATAAGTACAAGGAT-TATTCTTAGAA
* * * *
17984741 TTTAACCTAAAATAATATTTGTTTCACTCGACATTGACACACAGCGTTCTTGATATAAAAAATAA
385 TTTAACCTAAAATAATATTTGTTTCACTCAACACTGACACGCGGCGTTCTTGATATAAAAAAT-A
* * *
17984806 TTAATTCTTTTTTTTAATCTTAGAACTGCCATATTACGCGGCGATTTCAAGATAATTGCATGTGA
449 -TAATT-TTTTTTTT-ATCTTAAAACTGCAATCTTACGCGGCGATTTCAAGATAATTGCATGTGA
* *
17984871 CTGAGGTGTTTGTATTTTGCAGAGAGATTCTTTATTGATTTCATCAATTTTCTTTTC
511 CTGAGCT-TTTGTATTTGGCAG-GAGATTCTTT-TTGATTTCATCAATTTT-TTTTC
* * * * *
17984928 TTTTCTTTTTTTGTCAAACTTAAGAAGCCAATTTTAATGCTACGAGTAAATAAAAATAAAGGGAT
1 TTTT-TTTTTTT-TCAAACTTAAGAGGCCAACTTGAATGCTACGAGTAAATAAAAATAGAGGGAC
* * * * * *
17984993 CAAATCCGCACAAATCAATAAATTCAAGGACTACTATTAGAATTTAACCAAAAATAATATTTGTT
64 CAAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTT
** * * * * * *
17985058 TCTTTTGACTCTAACACGCAACATTCTTGATATAAAAAAAAT-ATTTCTTTTCTATTTTAAAGCT
129 TCACTCGACTCTGACACGCGACATTCTTGATATAAAAAAAATAATTTATTTT-TATCTTAAAACT
* * *
17985122 GCCATCTTACACGACGGTTTCAAGATAACTGCATCTGACTGAGCCACTTGTATTTGGCGGGGAGA
193 GCCATCTTACACGACGGTTTCAAGATAATTGCATCTGATTGAGCC-CTTGTATTTGGCAGGGAGA
* * *
17985187 TTTTTCTTTGATTTCATCGATTTTGTTTTTTTTTCTCAAACTTAATAGGCCAAGTTGAATGCTAC
257 TTTTTCGTTGATTTCATC-ATTTTGTTTTTTTTTCTCAAACTTAAAAGGCCAATTTGAATGCTAC
* * * *
17985252 GAATAAATAAAAATAGAGGGACCAAATCCGTGCAAATCTATAAGTACAAGGATTATTCTTAGAAT
321 GAGTAAATAAAAATAGAGGGACCAAATCTGCGCAAATCAATAAGTACAAGGATTATTCTTAGAAT
* * * * * *
17985317 TTAAACTAAAGTAATATTTGTTTCACTCAACACTGACATGTGGCATTCTTGATGTAAAAAATAGT
386 TTAACCTAAAATAATATTTGTTTCACTCAACACTGACACGCGGCGTTCTTGATATAAAAAATA-T
* * * *** * * *
17985382 AAATTATTTTTTTTATCTTAAAATTGCTATCTTAAGCATTGGTTTCAAGATAGTTACATGTGACT
450 -AATT-TTTTTTTTATCTTAAAACTGCAATCTTACGCGGCGATTTCAAGATAATTGCATGTGACT
* *
17985447 GAGCTTCTTGTATTTGGTAGGAAGATTCTTTGTTGATTTAATCAATTTTTTTTC
513 GAGCTT-TTGTATTTGGCAGG-AGATTCTTT-TTGATTTCATCAATTTTTTTTC
17985501 T
1 T
17985502 CAAACATAAG
Statistics
Matches: 936, Mismatches: 167, Indels: 68
0.80 0.14 0.06
Matches are distributed among these distances:
549 37 0.04
550 1 0.00
551 38 0.04
552 76 0.08
553 4 0.00
554 74 0.08
555 133 0.14
556 8 0.01
557 2 0.00
558 2 0.00
559 6 0.01
560 78 0.08
572 2 0.00
573 26 0.03
574 295 0.32
575 153 0.16
576 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (563 bp):
TTTTTTTTTTTTCAAACTTAAGAGGCCAACTTGAATGCTACGAGTAAATAAAAATAGAGGGACCA
AATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTAAAATAATATTTGTTTC
ACTCGACTCTGACACGCGACATTCTTGATATAAAAAAAATAATTTATTTTTATCTTAAAACTGCC
ATCTTACACGACGGTTTCAAGATAATTGCATCTGATTGAGCCCTTGTATTTGGCAGGGAGATTTT
TCGTTGATTTCATCATTTTGTTTTTTTTTCTCAAACTTAAAAGGCCAATTTGAATGCTACGAGTA
AATAAAAATAGAGGGACCAAATCTGCGCAAATCAATAAGTACAAGGATTATTCTTAGAATTTAAC
CTAAAATAATATTTGTTTCACTCAACACTGACACGCGGCGTTCTTGATATAAAAAATATAATTTT
TTTTTTATCTTAAAACTGCAATCTTACGCGGCGATTTCAAGATAATTGCATGTGACTGAGCTTTT
GTATTTGGCAGGAGATTCTTTTTGATTTCATCAATTTTTTTTC
Found at i:17985499 original size:855 final size:832
Alignment explanation
Indices: 17983785--17985514 Score: 2330
Period size: 835 Copynumber: 2.0 Consensus size: 832
17983775 TGAATGCTAA
* *
17983785 GTTGATTTCATCAATTTTGTTTTTTTCTCTAACTTAAGAGGCCAACTTGAATGCTAAGAGTAAAT
1 GTTGATTTCATCAA-TTT-TTTTTTTCTCAAACATAAGAGGCCAACTTGAATGCTAAGAGTAAAT
* *
17983850 AAAAATAGAGCGACCGAATCCGCGCAAATCAATAAGTACAAGGACTATTCTTAGAATTTAACCTA
64 AAAAATAGAGCGACCGAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAAAATTTAACCTA
* *
17983915 AAATAATATTTGTTTCACTCAACTATGACACGCGGCATTCTTGATATAAAAAAATAATAAATTCA
129 AAATAATATTTGTTTCACTCAACTATGACACACAGCATTCTTGATATAAAAAAATAATAAATTCA
* *
17983980 TTTTTTTTATCTTAAAACTGCCATATTACGCAACAGTTTCAAGTTAATTGAATGTTTGAGCTGCT
194 TTTTTTTTATCTTAAAACTGCCATATTACGCAACAGTTTCAAGATAATTGAATGTCTGAGCTGCT
*
17984045 TGTATTTGGCAAGGAGATTCTTCGTTGATTTCATCAATTTTATTCTTTTCTAAAACTTAAAATGC
259 TGTATTTGGCAAGGAGATTCTTCATTGATTTCATCAATTTTATTCTTTTCTAAAACTTAAAATGC
* * * * *
17984110 CAATTTGAATGCTATGAGTAAATAAAAATAGAGGGATCAAATCTGCGCAGATCAATAAACAAGGA
324 CAATTTGAATGCTACGAGTAAATAAAAATAAAGGGATCAAATCCGCACAAATCAATAAACAAGGA
* * * * * * *
17984175 CTATTCTTAGAATTTAACCTAAACTAATATTTGTTTCTTTCAACTCTTACACGCGACGTTCTTGA
389 CTACTATTAGAATTTAACCAAAAATAATATTTGTTTCTTTCAACTCTAACACGCAACATTCTTGA
* * * * *
17984240 TATAAAAAATATTTTTTGTTCAATTTTAAAGCTGCAATCTTACGCGGCAATTTGAAGATAATTGC
454 TATAAAAAATATTTCTTGTTCAATTTTAAAGCTGCAATCTTACACGACAATTTCAAGATAACTGC
* * *
17984305 ATGTGACAGAGCTACTTGTGTTTGGCGGCGAGATTCTTCTTTGATTTCATCGATTTTTTTTTTCA
519 ATCTGACAGAGCCACTTGTATTTGGCGGCGAGATTCTTCTTTGATTTCATCGATTTTTTTTTTCA
* *
17984370 AACTTAATAGGCCAAGTTGAATGCTACGAATAAATAGAAATAGAGGGACCAAATCTGTGCAAATC
584 AACTTAATAGGCCAAGTTGAATGCTACGAATAAATAAAAATAGAGGGACCAAATCCGTGCAAATC
* *
17984435 TATAAGTACAAGGACTATTCTTTGAATTTAAACTAAAATAATATTTGTTTCACTCGACACTGACA
649 TATAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCACTCAACACTGACA
* *
17984500 CGCGACATTCTTGACATAAAAATAATAAATTATTTTTGTCTTAAAACTTCCATCTTAAGCGTTGG
714 CGCGACATTCTTGACATAAAAATAATAAATTATTTTTATCTTAAAACTTCCATCTTAAGCATTGG
*
17984565 TTTCAAGATAGTTACATCTGATTGAGCGCCTTGTATTTGGTAGGAAGATTCTTT
779 TTTCAAGATAGTTACATCTGACTGAGCGCCTTGTATTTGGTAGGAAGATTCTTT
* * *
17984619 GTTGATTTCATCAATTTTGTTTTTTTTCACAAACATAAGAGGCCAATTTGAATGCTACGAGTAAA
1 GTTGATTTCATCAA--TT-TTTTTTTTCTCAAACATAAGAGGCCAACTTGAATGCTAAGAGTAAA
* * * *
17984684 TAAAAATAGAGGGATCC-AATCTACGCAAATCAATATGTACAAGGTCTATTCTTAAAATTTAACC
63 TAAAAATAGAGCGA-CCGAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAAAATTTAACC
* * *
17984748 TAAAATAATATTTGTTTCACTCGAC-ATTGACACACAGCGTTCTTGATAT-AAAAAATAATTAAT
127 TAAAATAATATTTGTTTCACTCAACTA-TGACACACAGCATTCTTGATATAAAAAAATAATAAAT
* ** *
17984811 TC-TTTTTTTTAATCTTAGAACTGCCATATTACGCGGC-GATTTCAAGATAATTGCATGTGACTG
191 TCATTTTTTTT-ATCTTAAAACTGCCATATTACGCAACAG-TTTCAAGATAATTGAATGT--CTG
* * * * *
17984874 AGGTGTTTGTATTTTGC-AGAGAGATTCTTTATTGATTTCATCAATTTTCTTTTCTTTTCTTTTT
252 AGCTGCTTGTATTTGGCAAG-GAGATTCTTCATTGATTTCATCAA-TTT-TATTCTTTTC-----
* *
17984938 TTGTCAAACTTAAGAA-GCCAATTTTAATGCTACGAGTAAATAAAAATAAAGGGATCAAATCCGC
309 ---TAAAACTTAA-AATGCCAATTTGAATGCTACGAGTAAATAAAAATAAAGGGATCAAATCCGC
**
17985002 ACAAATCAATAAATTCAAGGACTACTATTAGAATTTAACCAAAAATAATATTTGTTTCTTTTGAC
370 ACAAATCAATAAA--CAAGGACTACTATTAGAATTTAACCAAAAATAATATTTGTTTCTTTCAAC
* *
17985067 TCTAACACGCAACATTCTTGATATAAAAAAAATATTTCTT-TTCTATTTTAAAGCTGCCATCTTA
433 TCTAACACGCAACATTCTTGATAT--AAAAAATATTTCTTGTTCAATTTTAAAGCTGCAATCTTA
** * * *
17985131 CACGACGGTTTCAAGATAACTGCATCTGACTGAGCCACTTGTATTTGGCGGGGAGATTTTTCTTT
496 CACGACAATTTCAAGATAACTGCATCTGACAGAGCCACTTGTATTTGGCGGCGAGATTCTTCTTT
17985196 GATTTCATCGATTTTGTTTTTTTTTCTCAAACTTAATAGGCCAAGTTGAATGCTACGAATAAATA
561 GATTTCATCGA-----TTTTTTTTT-TCAAACTTAATAGGCCAAGTTGAATGCTACGAATAAATA
*
17985261 AAAATAGAGGGACCAAATCCGTGCAAATCTATAAGTACAAGGATTATTCTTAGAATTTAAACTAA
620 AAAATAGAGGGACCAAATCCGTGCAAATCTATAAGTACAAGGACTATTCTTAGAATTTAAACTAA
* * * * ** *
17985326 AGTAATATTTGTTTCACTCAACACTGACATGTGGCATTCTTGATGTAAAAAATAGTAAATTATTT
685 AATAATATTTGTTTCACTCAACACTGACACGCGACATTCTTGACAT-AAAAATAATAAATTA---
* * **
17985391 TTTTTATCTTAAAA-TTGCTATCTTAAGCATTGGTTTCAAGATAGTTACATGTGACTGAGCTTCT
746 TTTTTATCTTAAAACTT-CCATCTTAAGCATTGGTTTCAAGATAGTTACATCTGACTGAGCGCCT
17985455 TGTATTTGGTAGGAAGATTCTTT
810 TGTATTTGGTAGGAAGATTCTTT
*
17985478 GTTGATTTAATCAA--TTTTTTTTCTCAAACATAAGAGG
1 GTTGATTTCATCAATTTTTTTTTTCTCAAACATAAGAGG
17985515 TTTATTTTGA
Statistics
Matches: 781, Mismatches: 80, Indels: 50
0.86 0.09 0.05
Matches are distributed among these distances:
833 9 0.01
834 70 0.09
835 143 0.18
836 41 0.05
837 3 0.00
838 9 0.01
846 64 0.08
847 2 0.00
848 65 0.08
849 86 0.11
850 13 0.02
854 31 0.04
855 139 0.18
856 14 0.02
858 2 0.00
859 90 0.12
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (832 bp):
GTTGATTTCATCAATTTTTTTTTTCTCAAACATAAGAGGCCAACTTGAATGCTAAGAGTAAATAA
AAATAGAGCGACCGAATCCACGCAAATCAATAAGTACAAGGACTATTCTTAAAATTTAACCTAAA
ATAATATTTGTTTCACTCAACTATGACACACAGCATTCTTGATATAAAAAAATAATAAATTCATT
TTTTTTATCTTAAAACTGCCATATTACGCAACAGTTTCAAGATAATTGAATGTCTGAGCTGCTTG
TATTTGGCAAGGAGATTCTTCATTGATTTCATCAATTTTATTCTTTTCTAAAACTTAAAATGCCA
ATTTGAATGCTACGAGTAAATAAAAATAAAGGGATCAAATCCGCACAAATCAATAAACAAGGACT
ACTATTAGAATTTAACCAAAAATAATATTTGTTTCTTTCAACTCTAACACGCAACATTCTTGATA
TAAAAAATATTTCTTGTTCAATTTTAAAGCTGCAATCTTACACGACAATTTCAAGATAACTGCAT
CTGACAGAGCCACTTGTATTTGGCGGCGAGATTCTTCTTTGATTTCATCGATTTTTTTTTTCAAA
CTTAATAGGCCAAGTTGAATGCTACGAATAAATAAAAATAGAGGGACCAAATCCGTGCAAATCTA
TAAGTACAAGGACTATTCTTAGAATTTAAACTAAAATAATATTTGTTTCACTCAACACTGACACG
CGACATTCTTGACATAAAAATAATAAATTATTTTTATCTTAAAACTTCCATCTTAAGCATTGGTT
TCAAGATAGTTACATCTGACTGAGCGCCTTGTATTTGGTAGGAAGATTCTTT
Found at i:17987576 original size:5 final size:5
Alignment explanation
Indices: 17987566--17987603 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
17987556 CTAGTTTTCA
**
17987566 TTTAT TTTAT TTTAT TTTAT TTTAT TTCCT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
17987604 TCACTTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:17987584 original size:15 final size:15
Alignment explanation
Indices: 17987561--17987603 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
17987551 GGTCCCTAGT
17987561 TTTCA-TTTATTTTA
1 TTTCATTTTATTTTA
*
17987575 TTTTATTTTATTTTA
1 TTTCATTTTATTTTA
*
17987590 TTTCCTTTTATTTT
1 TTTCATTTTATTTT
17987604 TCACTTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTCATTTTATTTTA
Found at i:17996025 original size:79 final size:79
Alignment explanation
Indices: 17995929--17996088 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
17995919 TGTTATTGTA
17995929 CTTATGAACTAAAAATAAATTCACCACTAGTTGCCTTATTAAGTTTTGGACGGGTACATGGATTC
1 CTTATGAACTAAAAATAAATTCACCACTAGTTGCCTTATTAAGTTTTGGACGGGTACATGGATTC
17995994 TGGAAGTTGACCCT
66 TGGAAGTTGACCCT
17996008 CTTATGAACTAAAAATAAATTCACCACTAGTTGCCTTATTAAGTTTTGGACGGGTACATGGATTC
1 CTTATGAACTAAAAATAAATTCACCACTAGTTGCCTTATTAAGTTTTGGACGGGTACATGGATTC
17996073 TGGAAGTTGACCCT
66 TGGAAGTTGACCCT
17996087 CT
1 CT
17996089 GATTAATTTT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (79 bp):
CTTATGAACTAAAAATAAATTCACCACTAGTTGCCTTATTAAGTTTTGGACGGGTACATGGATTC
TGGAAGTTGACCCT
Found at i:18003261 original size:23 final size:23
Alignment explanation
Indices: 18003213--18003254 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
18003203 CAACTGGGAT
18003213 TTTTAAATTTAAGTTTGAATTAA
1 TTTTAAATTTAAGTTTGAATTAA
18003236 TTTTAAATTT-A-TTTGAATT
1 TTTTAAATTTAAGTTTGAATT
18003255 TGAATTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 10 0.53
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (23 bp):
TTTTAAATTTAAGTTTGAATTAA
Found at i:18003281 original size:27 final size:27
Alignment explanation
Indices: 18003226--18003303 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
18003216 TAAATTTAAG
** *
18003226 TTTGAATTAATTTTAAATTTATTTGAA
1 TTTGAATTAATTTTAAATTTAAATAAA
**
18003253 TTTGAATTTGTTTTAAATTTAAATAAA
1 TTTGAATTAATTTTAAATTTAAATAAA
* * * *
18003280 TTTAAAATAATTTGAAACTTAAAT
1 TTTGAATTAATTTTAAATTTAAAT
18003304 TAAAATTAAT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.50
Consensus pattern (27 bp):
TTTGAATTAATTTTAAATTTAAATAAA
Found at i:18004470 original size:16 final size:16
Alignment explanation
Indices: 18004446--18004476 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18004436 GACTTGATTT
*
18004446 TTTTTCCAGATCTGGA
1 TTTTACCAGATCTGGA
18004462 TTTTACCAGATCTGG
1 TTTTACCAGATCTGG
18004477 GTTCGAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (16 bp):
TTTTACCAGATCTGGA
Found at i:18005406 original size:59 final size:59
Alignment explanation
Indices: 18005252--18005801 Score: 725
Period size: 59 Copynumber: 9.4 Consensus size: 59
18005242 CCCGAAACTT
** *
18005252 CCAAAAATTACCTATTTTACCCCCAAACTTCCCAAAATTCTATTTTTAACCCCGATTTCA
1 CCAAAAATTACC-ATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * *
18005312 CC-AAAATGACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * *
18005370 CCAAAAATTACCATTTTACCTCTGAACCTTCAAAAATTCTATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * *
18005429 CCAAAAATTACAATTTTACCCCTAAACTTTCCAAAAGTCTATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * *
18005488 CCAAAAAATACCATTTTCCCCCT-AACTTTCCAAAATTCTATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
*
18005546 CCAAAAATTACCATTTTA-CCCTCGAACTTTCCAAAATTCTATATTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * * *
18005605 CCAAAAATTATCATTTTA-CCCTCAAACTCTCCAAAATTCCATTTTTAATCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * **
18005664 CC-GAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCTAATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * * **
18005722 CC-AAAATTACCATTTTACCCCTAAATTTTCTAAAATTCCATTTTCGACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* *
18005780 CCAAAAATTACTATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
18005802 CGGGTATCTA
Statistics
Matches: 435, Mismatches: 50, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
57 4 0.01
58 190 0.44
59 239 0.55
60 2 0.00
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
Found at i:18005433 original size:117 final size:117
Alignment explanation
Indices: 18005252--18005803 Score: 736
Period size: 117 Copynumber: 4.7 Consensus size: 117
18005242 CCCGAAACTT
*
18005252 CCAAAAATTACCTATTTTACCCCCAAACTTCCCAAAATTCTATTTTTAACCCCGATTTCACC-AA
1 CCAAAAATTACC-ATTTTACCCTCAAACTT-CCAAAATTCTATTTTTAACCCCGATTTCACCAAA
* *
18005316 AATGACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTTA
64 AATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * *
18005370 CCAAAAATTACCATTTTACCTCTGAACCTTCAAAAATTCTATTTTTAACCCCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACC-CTCAAACTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAA
* ** *
18005435 ATTACAATTTTACCCCTAAACTTTCCAAAAGTCTATTTTTAACCCCGATTTCA
65 ATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * *
18005488 CCAAAAAATACCATTTT-CCCCCTAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCTCAAAC-TTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAA
* *
18005552 ATTACCATTTTACCCTCGAACTTTCCAAAATTCTATATTTAACCCCGATTTCA
65 ATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * *
18005605 CCAAAAATTATCATTTTACCCTCAAACTCTCCAAAATTCCATTTTTAATCCCGATTTCACC-GAA
1 CCAAAAATTACCATTTTACCCTCAAACT-TCCAAAATTCTATTTTTAACCCCGATTTCACCAAAA
* **
18005669 ATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCTAATTTCA
65 ATTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
* * * **
18005722 CC-AAAATTACCATTTTACCC-CTAAATTTTCTAAAATTCCATTTTCGACCCCGATTTCACCAAA
1 CCAAAAATTACCATTTTACCCTC-AAA-CTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAA
* *
18005785 AATTACTATTTTGCCCCCG
64 AATTACCATTTTACCCCCG
18005804 GGTATCTAAA
Statistics
Matches: 381, Mismatches: 45, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
115 1 0.00
116 51 0.13
117 209 0.55
118 120 0.31
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (117 bp):
CCAAAAATTACCATTTTACCCTCAAACTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAAA
TTACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCA
Found at i:18005530 original size:176 final size:175
Alignment explanation
Indices: 18005252--18005801 Score: 761
Period size: 176 Copynumber: 3.1 Consensus size: 175
18005242 CCCGAAACTT
* *
18005252 CCAAAAATTACCTATTTTACCCCCAAACTTCCCAAAATTCTATTTTTAACCCCGATTTCACCAAA
1 CCAAAAATTACCTATTTTACCCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAA
*
18005317 ATGACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTTACCAAAAATTACC
66 AT-ACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAAATTACC
*
18005382 ATTTTACCTCTGAACCTTCAAAAATTCTATTTTTAACCCCGATTTCA
130 ATTTTACC-CTGAACTTTCAAAAATTCTATTTTTAACCCCGATTTCA
* *
18005429 CCAAAAATTA-CAATTTTACCCCTAAACTTTCCAAAAGTCTATTTTTAACCCCGATTTCACCAAA
1 CCAAAAATTACCTATTTTACCCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACC--A
* *
18005493 AAATACCATTTT-CCCCCTAACTTTCCAAAATTCTATTTTTAACCTCGATTTCACCAAAAATTAC
64 AAATACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAAATTAC
* *
18005557 CATTTTACCCTCGAACTTTCCAAAATTCTATATTTAACCCCGATTTCA
129 CATTTTACCCT-GAACTTTCAAAAATTCTATTTTTAACCCCGATTTCA
* * * *
18005605 CCAAAAATTATC-ATTTTA-CCCTCAAACTCTCCAAAATTCCATTTTTAATCCCGATTTCACCGA
1 CCAAAAATTACCTATTTTACCCCT-AAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACC-A
* * **
18005668 AATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCTAATTTCACC-AAAATTAC
64 AAATACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAAATTAC
* * * * **
18005732 CATTTTACCCCTAAATTTTCTAAAATTCCATTTTCGACCCCGATTTCA
129 CATTTTA-CCCTGAACTTTCAAAAATTCTATTTTTAACCCCGATTTCA
*
18005780 CCAAAAATTA-CTATTTTGCCCC
1 CCAAAAATTACCTATTTTACCCC
18005802 CGGGTATCTA
Statistics
Matches: 335, Mismatches: 29, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
174 1 0.00
175 77 0.23
176 233 0.70
177 19 0.06
178 5 0.01
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (175 bp):
CCAAAAATTACCTATTTTACCCCTAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAA
ATACCATTTTACCCCCGAACTTTCCAAAATTCTATTTTTAACCCCGATTTCACCAAAAATTACCA
TTTTACCCTGAACTTTCAAAAATTCTATTTTTAACCCCGATTTCA
Found at i:18005763 original size:28 final size:28
Alignment explanation
Indices: 18005250--18005765 Score: 137
Period size: 29 Copynumber: 17.6 Consensus size: 28
18005240 ACCCCGAAAC
* *
18005250 TTCCAAAAATTACCTATTTTACCCCCAAACT
1 TTCC-AAAATTACC-ATTTTA-CCCCTAATT
* * *
18005281 TCCCAAAATT-CTATTTTTAACCCC-GATT
1 TTCCAAAATTACCA-TTTT-ACCCCTAATT
* * * *
18005309 TCACCAAAATGACCATTTTACCCCCGAACT
1 T-TCCAAAATTACCATTTTA-CCCCTAATT
* *
18005339 TTCCAAAATT-CTATTTTTAACCCC-GATT
1 TTCCAAAATTACCA-TTTT-ACCCCTAATT
* **
18005367 TTACCAAAAATTACCATTTTACCTCTGAACC
1 TT-CC-AAAATTACCATTTTACCCCT-AATT
* * *
18005398 TTCAAAAATT-CTATTTTTAACCCC-GATT
1 TTCCAAAATTACCA-TTTT-ACCCCTAATT
* * *
18005426 TCACCAAAAATTACAATTTTACCCCTAAACT
1 T-TCC-AAAATTACCATTTTACCCCT-AATT
* * *
18005457 TTCCAAAAGT-CTATTTTTAACCCC-GATT
1 TTCCAAAATTACCA-TTTT-ACCCCTAATT
* * * *
18005485 TCACCAAAAAATACCATTTTCCCCCTAACT
1 T-TCC-AAAATTACCATTTTACCCCTAATT
* * *
18005515 TTCCAAAATT-CTATTTTTA-ACCTCGATT
1 TTCCAAAATTACCA-TTTTACCCCT-AATT
* * *
18005543 TCACCAAAAATTACCATTTTACCCTCGAACT
1 T-TCC-AAAATTACCATTTTACCC-CTAATT
* *
18005574 TTCCAAAATT-CTATATTTAACCCC-GATT
1 TTCCAAAATTACCAT-TTT-ACCCCTAATT
* * * *
18005602 TCACCAAAAATTATCATTTTACCCTCAAACT
1 T-TCC-AAAATTACCATTTTACCC-CTAATT
* * *
18005633 CTCCAAAATT-CCATTTTTAATCCC-GATT
1 TTCCAAAATTACCA-TTTT-ACCCCTAATT
* * * *
18005661 TCACCGAAATTACCATTTTACCCCCGAACT
1 T-TCCAAAATTACCATTTTA-CCCCTAATT
*
18005691 TTCCAAAATT-CCATTTTTAACCCTAATT
1 TTCCAAAATTACCA-TTTTACCCCTAATT
*
18005719 TCACCAAAATTACCATTTTACCCCTAAATT
1 T-TCCAAAATTACCATTTTACCCCT-AATT
*
18005749 TTCTAAAATT-CCATTTT
1 TTCCAAAATTACCATTTT
18005766 CGACCCCGAT
Statistics
Matches: 351, Mismatches: 84, Indels: 103
0.65 0.16 0.19
Matches are distributed among these distances:
27 5 0.01
28 60 0.17
29 157 0.45
30 103 0.29
31 25 0.07
32 1 0.00
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (28 bp):
TTCCAAAATTACCATTTTACCCCTAATT
Done.