Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 69 of 120
Found at i:20384561 original size:58 final size:58
Alignment explanation
Indices: 20384496--20384610 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
20384486 ATGAGTTGTT
* * *
20384496 TATGAGTGTTATTT-AGGAATAAAATTATATTTGGGTTTAAAAATATTTGGGTTTAGTG
1 TATGAGTGTT-TTTGAAGAACAAAATTATATTTGGGTTTAAAAATATTTGGATTTAGTG
20384554 TATGAGTGTTTTTGAAGAACAAAATTATATTTGGGTTTAAAAATATTTGGATTTAGT
1 TATGAGTGTTTTTGAAGAACAAAATTATATTTGGGTTTAAAAATATTTGGATTTAGT
20384611 TTGTTGATGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
57 3 0.06
58 50 0.94
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.44
Consensus pattern (58 bp):
TATGAGTGTTTTTGAAGAACAAAATTATATTTGGGTTTAAAAATATTTGGATTTAGTG
Found at i:20384775 original size:9 final size:9
Alignment explanation
Indices: 20384749--20384786 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
20384739 CAATATAGTT
*
20384749 TTATTCGAT
1 TTATTCGAA
20384758 TTATTCGAA
1 TTATTCGAA
20384767 TTATTCGAA
1 TTATTCGAA
*
20384776 TAATTCGAA
1 TTATTCGAA
20384785 TT
1 TT
20384787 CGAAAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (9 bp):
TTATTCGAA
Found at i:20386394 original size:27 final size:27
Alignment explanation
Indices: 20386358--20386409 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
20386348 AAAGGATTCG
*
20386358 TATTTGGATTTCAAGAACTGGGTTCCT
1 TATTTAGATTTCAAGAACTGGGTTCCT
20386385 TATTTAGATTTCAAGAACTGGGTTC
1 TATTTAGATTTCAAGAACTGGGTTC
20386410 GTAACCCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
TATTTAGATTTCAAGAACTGGGTTCCT
Found at i:20387005 original size:200 final size:200
Alignment explanation
Indices: 20386662--20387941 Score: 2060
Period size: 200 Copynumber: 6.4 Consensus size: 200
20386652 GTTTCTTAGA
* * *
20386662 GTCTCATCAGGAAGGTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTTTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* *
20386727 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGA
* * * *
20386792 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTGCTTT
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20386857 TCAGT
196 TCAGT
* *
20386862 GTCTCATCAAGAAGCTGGGTTCGAAATTTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* *
20386927 TATCTCATCAGGAAGATAACCGCCTCGCTTGTTTTAATTCGCTTCTTTGGATCTCCTCAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGA
*
20386992 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20387057 TCAGT
196 TCAGT
* * * **
20387062 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCTTTGAGTTAGTATTCTTCTCAA
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* *
20387127 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTTCTTAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGA
*
20387192 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20387257 TCAGT
196 TCAGT
* *
20387262 GTCTCATCAGGAAGCTGGGTTC-AAAATTTGGCTCGTGTTGAGCGTTCAGCTGGTATTCTTCTCT
1 GTCTCATCAGGAAGCTGGGTTCGAAAA-TTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCT
* * * *
20387326 GTATCTCATCAAGAAGATGACCGCCTCGCTTGTTTTAGTTCGCTTCTTTGGATCTCCTCAAGAAG
65 GTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAG
* * *
20387391 ACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTT
130 ACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTT
20387456 CTCAGT
195 CTCAGT
* * * *
20387462 GTCTCATTC-GGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGCGTTGGTATTCTTTTTT
1 GTCTCA-TCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCT
* * * *
20387526 GTATCTCATCAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTTAGGAAG
65 GTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAG
* *
20387591 ACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTATCCATTTTATTGCTTCGACCTGCTT
130 ACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTT
* *
20387656 CTCTGG
195 CTCAGT
* *
20387662 GTCTCATGAGGAAGCTGGGTTTGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* *
20387727 TATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTTCTCAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGA
* * *
20387792 TGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20387857 TCAGT
196 TCAGT
* *
20387862 GTCTCATCAGGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
20387927 TATCTCATCAGGAAG
66 TATCTCATCAGGAAG
20387942 CCAACCATTT
Statistics
Matches: 988, Mismatches: 88, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
199 5 0.01
200 977 0.99
201 6 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (200 bp):
GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGA
CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
TCAGT
Found at i:20387802 original size:600 final size:600
Alignment explanation
Indices: 20386662--20390494 Score: 2157
Period size: 600 Copynumber: 6.3 Consensus size: 600
20386652 GTTTCTTAGA
* *
20386662 GTCTCATCAGGAAGGTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTTTG
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
20386727 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
* *
20386792 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTGCTTT
131 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTACTTC
* *
20386857 TCAGTGTCTCATCAAGAAGCTGGGTTCGAAATTTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTT
196 TCAGTGTCTCATCAAGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTT
* * * *
20386922 CTCTGTATCTCATCAGGAAGATAACCGCCTCGCTTGTTTTAATTCGCTTCTTTGGATCTCCTCAG
261 CTCTGTATCTCATCAGGAAGATAACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCAG
* *
20386987 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACTT
326 GAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* *
20387052 GCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCTTTGAGTTAGTA
391 GCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAGTA
*
20387117 TTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTT
456 TTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTT
* * *
20387182 CTTAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGCTTC
521 CTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTACTTC
20387247 GACCTGCTTCTCAGT
586 GACCTGCTTCTCAGT
* * *
20387262 GTCTCATCAGGAAGCTGGGTTCAAAATTTGGCTCGTGTTGAGCGTTCAGCTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* * * *
20387327 TATCTCATCAAGAAGATGACCGCCTCGCTTGTTTTAGTTCGCTTCTTTGGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
* * *
20387392 CGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTG-TTTCGACCTACTT
131 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTT-GACCTACTT
* *
20387456 CTCAGTGTCTCATTC-GGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGCGTTGGTATTC
195 CTCAGTGTCTCA-TCAAGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTC
* * * *
20387520 TTTTTTGTATCTCATCAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTT
259 TTCTCTGTATCTCATCAGGAAGATAACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTC
*
20387585 AGGAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTATCCATTTTATTGCTTCGAC
324 AGGAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAC
* * * * *
20387650 CTGCTTCTCTGGGTCTCATGAGGAAGCTGGGTTTGAAAATTGGCTCGTGTTGAGCGTTGAGTTGG
389 CTGCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAG
**
20387715 TATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATC
454 TATTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATC
* *
20387780 TTCTCAGGAAGATGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACT
519 TTCTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTACT
20387845 TCGACCTGCTTCTCAGT
584 TCGACCTGCTTCTCAGT
*
20387862 GTCTCATCAGGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
*** ** *** * * * *
20387927 TATCTCATCAGGAAGCCAACC-ATTTTATTGTTTTGA-TCTGCTTCTCAGTG-TCTCATCAGGAA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTC-GCTTCTCTG-GATCTCCTCAAGAA
* * *
20387989 GCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCATCAGGA
129 -C-----AC--AAATT---T-G-G-T---C-----------C-ACTTCTCTATATCTCATCAGGA
* * * *** * ** * * * * *
20388054 AGATGACCGTCTCGCTTG-TTTTAATTCGCTTCTCTG-GATCTCCTCAAGAAGAT-GAATTCGGT
165 AGCTAACCAT-TTTATTGCTTTGACCT-ACTTCTCAGTG-TCTCATCAAGAAGCTAG-GTTC-G-
** * * * **** * ** **
20388116 CCACTT--CTCTGTGTCTCATCAG--GAAGCTAACCATT-TTAT-TGT-T-TCGA-CCTG--CTT
224 AAAATTGGCTC-GTGT-TGAGC-GTTG-AG-TTGGTATTCTTCTCTGTATCTC-ATCAGGAAGAT
** * ** *** * * * ** * * ** *
20388170 CTCAGTGTC--TTATCAAGAAGCTGGGTTC-GAAAAT-TGGCTC-GTGTTGA-GCATTGAGTTGG
283 AACCGCCTCGATTAT-TTTAA-TTCGCTTCTCTAGATCT-CCTCAG-GAAGACG-A---ATTTGG
*** ** * * *** ** ** * *
20388229 TATTCTTCTCTATATCTCATCAGGAAGATGAACGC-CTCGCTTG-TTTTAATTCGCTTCTCTGGA
340 TCCACTTCTCTGCATCTCATCAGGAAGCT-AAC-CATTTTATTGCTTCGACCT-GCTTCTCAGGG
* * ** * ** * * * * * *
20388292 TCTCCTCAAGAAGAC-GAATTTGATCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATT
402 TCTCATCAGGAAG-CTGGGTTCGA---A--AAT-TG-G---CA-C--G-TGTTGAGC-GTTGA--
* * * * * * ** ** * *
20388356 GCTTCG-ACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTCGAAAATTGGGTCGTGTTGAGCG
449 G-TTAGTA--TTCTTCTCAATATCTCATCAGGAAGAT--GACCG---CCT-CG-CATGTT-----
* ** * * ** * * *
20388420 TTGAGCTGGTATTCTTCTCTGCATC-TCATCATGAAGATGACTGCCTCGCTTGTTTTAATTCGCT
499 TT-A-AT--T-CGCTTCTCTGGATCTTC-TCA-G--GAAGAC-GAAT---TTG-----GTCCACT
* * * ** ** *
20388484 TCTCTGGATCTCCTCAGGAAG---ATGAATTTGGT-C--C-A-CTTCTT-T--GT
546 TATCTGTATCTCATCAGGAAGCTAACCAATTTATTACTTCGACCTGCTTCTCAGT
* ** * **
20388528 ATCTCATCAGGAAGC-----T-AACCATT---T--TATT--GC-TTCGA---CCTA--CTTCTCA
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTT-GAGTTGGTATTCTTCTC-
* * ** * * *
20388574 TG--TCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCT
64 TGTATCTCATCAGGAAGATGA--CCG---CCTCGCT--TGTT-----TT-AATTCG----CTTCT
* * *** * * ** *
20388637 CTGTATCTCATCAGAAAGATGAC-CGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTTC-TCAA
112 CTGGATCTCCTC---AAGA--ACACAAAT---TTG-----GTCCACTTCTCTATATC-TCATCAG
* * * * * **
20388700 GAAG---ACGA----ATT-C--GGTCC-ACTTCTCTGTGTCTCATCAGGAAGCTA------ACCA
163 GAAGCTAACCATTTTATTGCTTTGACCTACTTCTCAGTGTCTCATCAAGAAGCTAGGTTCGAAAA
* ** * *
20388748 TT---T--TATT--GC-TTCGA---CCTA--CTTCTCAGTGTCTCATCAGGAAGCTGGATTCGAA
228 TTGGCTCGTGTTGAGCGTT-GAGTTGGTATTCTTCTCTGTATCTCATCAGGAA----GA-T----
** * * * * * * * * **
20388800 AATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCT-GTATCTCATTAGGAAGATGACCGCC
283 AACCGCCTCG-ATT-A--TTTTAATTCG----CTTCTCTAG-ATCTCCTCAGG-A-A-GA-CGAA
* ** * * * * * *
20388864 TCGCTTGTTTTAATTCGCTTCCATGGATCTCCTAAGGAAGAC-AA--A---T-TTG-GTCCA-CT
335 T---TTGGTCCACTT--C-T-C-TGCATCTCATCAGGAAG-CTAACCATTTTATTGCTTCGACCT
* * * * * * *
20388920 TCTT-T--GCGTCTAATCAGGAAGCTGGGTTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTA
391 GCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAGTA
* ** * * *
20388982 ATCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTC
456 TTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTT
* * * * * * *
20389047 CTTAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACTATTTTCTTGCTTC
521 CTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTACTTC
20389112 GACCTGCTTCTCAGT
586 GACCTGCTTCTCAGT
* * * * * *
20389127 GTCTCATCAGGAAGCTAGGTTCGACAATTAGCTCGTGTTGAACGTTGAGTTGGTATTCTTCTCTC
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* * * * * * * *
20389192 TGTCTCTTCAGGAAAATGACTGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCCTCAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
* * * * *
20389257 CGAATTTGGTCCACTTCTCTGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTACTTC
* * * * * *
20389322 TCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGACTCGTGTTGAGCATTGAGTTGATATTCT
196 TC-AGTGTCTCATCAAGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCT
* * * * *
20389386 TCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCA
260 TCTCTGTATCTCATCAGGAAGATAACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCA
* * * * ** *
20389451 AGAAGATGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACC
325 GGAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACC
* * * * * *
20389516 TGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGT
390 TGCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAGT
** *
20389581 ATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCT
455 ATTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCT
* * * * * * *
20389646 CCTTAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATTTTATTGCTT
520 TCTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTACTT
20389711 CGACCTGCTTCTCAAG-
585 CGACCTGCTTCTC-AGT
* * *
20389727 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* * * * *
20389792 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
* * * * *
20389857 CGAATTCGGTCCACTTCTC-AGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTT
131 CAAATTTGGTCCACTTCTCTA-TATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTACTT
* * * * *
20389921 CTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTC
195 CTC-AGTGTCTCATCAAGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTC
* * * * * *
20389985 TTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTC
259 TTCTCTGTATCTCATCAGGAAGATAACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTC
* * * ** *
20390050 AAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGAC
324 AGGAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAC
* * * * * *
20390115 CTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGG
389 CTGCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAG
** * *
20390180 TATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGAT-
454 TATTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATC
* * * *
20390244 TTCCTCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGC
519 TT-CTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTAC
20390309 TTCGACCTGCTTCTCAGT
583 TTCGACCTGCTTCTCAGT
* *
20390327 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTTTCTG
1 GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
* * * ** *
20390392 TATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTCCTCTGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
* *
20390457 CAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCT
131 CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCT
20390495 GGGTTCGAAA
Statistics
Matches: 2497, Mismatches: 456, Indels: 560
0.71 0.13 0.16
Matches are distributed among these distances:
588 26 0.01
589 36 0.01
590 1 0.00
591 8 0.00
592 5 0.00
593 3 0.00
594 11 0.00
595 4 0.00
596 13 0.01
597 17 0.01
598 8 0.00
599 52 0.02
600 1561 0.63
601 36 0.01
602 1 0.00
603 1 0.00
604 2 0.00
605 18 0.01
606 6 0.00
607 4 0.00
608 3 0.00
609 7 0.00
610 9 0.00
611 9 0.00
612 5 0.00
613 12 0.00
614 4 0.00
615 4 0.00
616 8 0.00
617 31 0.01
618 38 0.02
619 6 0.00
621 5 0.00
622 4 0.00
623 2 0.00
624 9 0.00
625 12 0.00
626 12 0.00
627 2 0.00
628 72 0.03
629 64 0.03
630 16 0.01
631 11 0.00
632 6 0.00
633 3 0.00
634 5 0.00
635 5 0.00
636 37 0.01
637 1 0.00
638 4 0.00
639 8 0.00
640 6 0.00
641 5 0.00
642 3 0.00
643 11 0.00
644 4 0.00
645 3 0.00
646 3 0.00
647 21 0.01
648 59 0.02
649 6 0.00
650 5 0.00
652 2 0.00
653 9 0.00
654 1 0.00
655 12 0.00
657 1 0.00
660 10 0.00
661 5 0.00
662 2 0.00
663 2 0.00
664 4 0.00
665 28 0.01
666 17 0.01
668 8 0.00
669 8 0.00
670 2 0.00
671 1 0.00
672 3 0.00
673 1 0.00
674 6 0.00
677 22 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (600 bp):
GTCTCATCAGGAAGCTGGGTTCAAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAACA
CAAATTTGGTCCACTTCTCTATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTACTTC
TCAGTGTCTCATCAAGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTT
CTCTGTATCTCATCAGGAAGATAACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCAG
GAAGACGAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCGTTGAGTTAGTA
TTCTTCTCAATATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTT
CTCAGGAAGACGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCAATTTATTACTTC
GACCTGCTTCTCAGT
Found at i:20387997 original size:114 final size:114
Alignment explanation
Indices: 20387809--20388055 Score: 422
Period size: 114 Copynumber: 2.2 Consensus size: 114
20387799 GGTCCACTTA
*
20387809 TCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTGTCTCATCAGGA
1 TCTGTATCTCATCAGGAAGCCAACCATTTTATTACTTCGACCTGCTTCTCAGTGTCTCATCAGGA
20387874 AGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
66 AGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
** * *
20387923 TCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCATCAGGA
1 TCTGTATCTCATCAGGAAGCCAACCATTTTATTACTTCGACCTGCTTCTCAGTGTCTCATCAGGA
* * *
20387988 AGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTC
66 AGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
20388037 TCTGTATCTCATCAGGAAG
1 TCTGTATCTCATCAGGAAG
20388056 ATGACCGTCT
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 125 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (114 bp):
TCTGTATCTCATCAGGAAGCCAACCATTTTATTACTTCGACCTGCTTCTCAGTGTCTCATCAGGA
AGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
Found at i:20388006 original size:314 final size:314
Alignment explanation
Indices: 20387605--20388255 Score: 1068
Period size: 314 Copynumber: 2.1 Consensus size: 314
20387595 ATTTGGTCCA
* * * * *
20387605 CTTCTCTGCATCTCATCAGGAAGCTATCCATTTTATTGCTTCGACCTGCTTCTCTGGGTCTCATG
1 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGCTTCGACCTGCTTCTCAGGGTCTCATC
*
20387670 AGGAAGCTGGGTTTGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * *
20387735 CAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTTCTCAGGAAGATGAATTTG
131 CAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
20387800 GTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTGTC
196 GTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTGTC
* *
20387865 TCATCAGGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATT
261 TCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCATTGAGTTGGTATT
* * * *
20387919 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGCTTCGACCTGCTTCTCAGGGTCTCATC
*
20387984 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* *
20388049 CAGGAAGATGACCGTCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
131 CAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
* * **
20388114 GTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTCTCAGTGTC
196 GTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTGTC
* * *
20388179 TTATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATT
261 TCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCATTGAGTTGGTATT
*
20388233 CTTCTCTATATCTCATCAGGAAG
1 CTTCTCTGTATCTCATCAGGAAG
20388256 ATGAACGCCT
Statistics
Matches: 311, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
314 311 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (314 bp):
CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGCTTCGACCTGCTTCTCAGGGTCTCATC
AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
CAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
GTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTGTC
TCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCATTGAGTTGGTATT
Found at i:20388125 original size:200 final size:200
Alignment explanation
Indices: 20387919--20388942 Score: 1658
Period size: 200 Copynumber: 5.1 Consensus size: 200
20387909 AGTTGGTATT
* * * * *
20387919 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
*
20387984 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * *
20388049 CAGGAAGATGACCGTCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
20388114 GTCCA
196 GTCCA
* *
20388119 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTCTCAGTGTCTTATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
* * *
20388184 AAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
*
20388249 CAGGAAGATGAACGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
*
20388314 ATCCA
196 GTCCA
20388319 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
* * * *
20388384 AAGAAGCTGGGTTCGAAAATTGGGTCGTGTTGAGCGTTGAGCTGGTATTCTTCTCTGCATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * * *
20388449 CATGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
20388514 GTCCA
196 GTCCA
* * *
20388519 CTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCA-TGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
*
20388583 AGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * * *
20388648 CAGAAAGATGACCGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTTCTCAAGAAGACGAATTCG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
20388713 GTCCA
196 GTCCA
*
20388718 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
*
20388783 AGGAAGCTGGATTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* *
20388848 TAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTC-CATGGATCTCCT-AAGGAAGACAAATT
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTC-TGGATCTCCTCAA-GAAGACGAATT
20388911 TGGTCCA
194 TGGTCCA
* * *
20388918 CTTCTTTGCGTCTAATCAGGAAGCT
1 CTTCTCTGTGTCTCATCAGGAAGCT
20388943 GGGTTCGAAA
Statistics
Matches: 765, Mismatches: 56, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
199 187 0.24
200 578 0.76
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (200 bp):
CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGAATTTG
GTCCA
Found at i:20388172 original size:514 final size:514
Alignment explanation
Indices: 20387405--20388455 Score: 1672
Period size: 514 Copynumber: 2.0 Consensus size: 514
20387395 ATTTGGTCCA
* *
20387405 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGTCTCATT
1 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTCGACCTACTTCTCAGTGTCTCATT
* * *
20387470 CGGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGCGTTGGTATTCTTTTTTGTATCTCAT
66 CGGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * *
20387535 CAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTTAGGAAGACGAATTTG
131 CAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGACGAATTCG
* *
20387600 GTCCACTTCTCTGCATCTCATCAGGAAGCTATCCATTTTATTGCTTCGACCTGCTTCTCTGGGTC
196 GTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGGGTC
* * * * *
20387665 TCATGAGGAAGCTGGGTTTGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTAT
261 TCATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
* * * *
20387730 CTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTTCTCAGGAAGATGA
326 CTCATCAGGAAGATGAACGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGA
*
20387795 ATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCA
391 ATTTGATCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCA
* *
20387860 GTGTCTCATCAGGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTATT
456 GTGTCTCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGCTGGTATT
* * *
20387919 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCA-T
1 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTCGACCTACTTCTCAGTGTCTCATT
* *
20387983 CAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCA
66 C-GGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCA
* * * * *
20388048 TCAGGAAGATGACCGTCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTC
130 TCAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGACGAATTC
** * *
20388113 GGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTCTCAGTGT
195 GGTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGGGT
*
20388178 CTTATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATA
260 CTCATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATA
*
20388243 TCTCATCAGGAAGATGAACGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACG
325 TCTCATCAGGAAGATGAACGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACG
* * *
20388308 AATTTGATCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTC
390 AATTTGATCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTC
* * *
20388373 AGTGTCTCATCAAGAAGCTGGGTTCGAAAATTGGGTCGTGTTGAGCGTTGAGCTGGTATT
455 AGTGTCTCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGCTGGTATT
* *
20388433 CTTCTCTGCATCTCATCATGAAG
1 CTTCTCTGTATCTCATCAGGAAG
20388456 ATGACTGCCT
Statistics
Matches: 490, Mismatches: 46, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
513 2 0.00
514 488 1.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (514 bp):
CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTCGACCTACTTCTCAGTGTCTCATT
CGGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
CAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGACGAATTCG
GTCCACTTCTCTGCATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGGGTC
TCATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
CTCATCAGGAAGATGAACGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGA
ATTTGATCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCA
GTGTCTCATCAAGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGCTGGTATT
Found at i:20388199 original size:714 final size:713
Alignment explanation
Indices: 20387205--20389406 Score: 2602
Period size: 714 Copynumber: 3.0 Consensus size: 713
20387195 ATTTGGTCCA
* * *
20387205 CTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
* *
20387270 AGGAAGCTGGGTTC-AAAATTTGGCTCGTGTTGAGCGTTCAGCTGGTATTCTTCTCTGTATCTCA
66 AGGAAGCTGGGTTCGAAAA-TTGGCTCGTGTTGAGCGTTCAGTTGGTCTTCTTCTCTGTATCTCA
* * * * *
20387334 TCAAGAAGATGACCGCCTCGCTTGTTTTAGTTCGCTTCTTTGGATCTCCTCAAGAAGACGAATTT
130 TCAGGAAGATGACCGTCTCGCTTGTTTTAGTTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTC
20387399 GGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGT
195 GGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGT
* * * * *
20387464 CTCATTC-GGAAGCTAGGTTCGAAAATTGGCTCGTGTTGAGCGTTGCGTTGGTATTCTTTTTTGT
260 CT-AATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGT
* * *
20387528 ATCTCATCAGGAAGATGACCGCCTCGATTATTTTAATTCGCTTCTCTAGATCTCCTTAGGAAGAC
324 ATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGAC
* *
20387593 GAATTTGGTCCACTTCTCTGCATCTCATCAGGAAGCTATCCATTTTATTGCTTCGACCTGCTTCT
389 GAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCT
* * * *
20387658 CTGGGTCTCATGAGGAAGCTGGGTTTGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
454 CAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTC
* * *
20387723 TCTGTATCTCATCAGGAAGATGACCGCCTCGCATGTTTTAATTCGCTTCTCTGGATCTTCTCAGG
519 TCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGG
* *
20387788 AAGATGAATTTGGTCCACTTATCTGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTG
584 AAGATGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTG
*
20387853 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCAAAAATTAGCTCGTGTTGAGCGTTGAGTTGGTAT
649 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATT-GCTCGTGTTGAGCGTTGAGTTGGTAT
20387918 T
713 T
* *
20387919 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
*
20387984 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTCAGTTGGTCTTCTTCTCTGTATCTCAT
*
20388049 CAGGAAGATGACCGTCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
131 CAGGAAGATGACCGTCTCGCTTGTTTTAGTTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
*
20388114 GTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTCTCAGTGTC
196 GTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGTC
* * * *
20388179 TTATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
261 TAATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTAT
* * *
20388244 CTCATCAGGAAGATGAACGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGA
326 CTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGACGA
* *
20388309 ATTTGATCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCA
391 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCA
* * *
20388374 GTGTCTCATCAAGAAGCTGGGTTCGAAAATTGGGTCGTGTTGAGCGTTGAGCTGGTATTCTTCTC
456 GTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTC
* *
20388439 TGCATCTCATCATGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAA
521 TGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAA
* *
20388504 GATGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACT
586 GATGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCT
*
20388569 TCTCA-TGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATT
651 TCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATT-GCTCGTGTTGAGCGTTGAGTTGGTATT
* * * ** *** * * *
20388632 CTTCTCTGTATCTCATCAGAAAGATGACCGCCTCGCTTGTTTTAAT-TCACTTCTCTG-GATCTT
1 CTTCTCTGTATCTCATCAGGAAGCTAACC-AATTTATTGTTTTGATCT-GCTTCTCAGTG-TC-T
* ** ** * * *
20388695 C-TCAAGAAGAC-GAATTCGGTCCACTT--CTCTGTGTCTCATCAGGAAGCTAACCATTTTATTG
62 CATCAGGAAG-CTGGGTTC-G-AAAATTGGCTC-GTG--T--T---G-AG-----C-GTTCA--G
** * * * * * *
20388756 CTTCGACCTACTTCTCAGTGTCTCATCAGGAAGCTGGATTCGAAAAT-TGGCTCGTGTTGAGCGT
107 -TT-GGTCTTCTTCTCTGTATCTCATCAGGAAGAT-GA-CCG----TCTCGCT--TGTT-----T
* * * * * * * * * * * *
20388820 TGAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATG-A--CCGCCTCGCTTGT-TTTAATTCG
157 T-AGTTCG----CTTCTCTGGATCTCCTCAAGAAGATGAATTCGGTC-CACTTCTCTGT--GTCT
* ** ** **** ** * * ** *
20388881 CTTCCATGGATCTCCTAAGGAAGACA-AATTTGGTCC-ACTTCTTTGCGTCTAATCAGGAAGCTG
214 CAT-CA-GGA--AGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGTCTAATCAGGAAGCTG
* * *
20388944 GGTTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTAATCTTCTCTGTATCTCATCAGGAAGAT
275 GGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGAT
* *
20389009 GACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGACAAATTTGGTCCACTTC
340 GACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGACGAATTTGGTCCACTTC
* *
20389074 TCTGTATCTCATCAGGAAGCTAACTATTTTCTTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGA
405 TCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGA
* * * * * * *
20389139 AGCTAGGTTCGACAATTAGCTCGTGTTGAACGTTGAGTTGGTATTCTTCTCTCTGTCTCTTCAGG
470 AGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAGG
* * * *
20389204 AAAATGACTGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCCTCAGGAAGACGAATTTGGTCC
535 AAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTGGTCC
*
20389269 ACTTCTCTGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAAG-GTCTCA
600 ACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTC-AGTGTCTCA
* * *
20389333 TGAGGAAGCTGGGTTCGAAAATTGACTCGTGTTGAGCATTGAGTTGATATT
664 TCAGGAAGCTGGGTTCGAAAATTG-CTCGTGTTGAGCGTTGAGTTGGTATT
*
20389384 CTTCTCTGTATCTTATCAGGAAG
1 CTTCTCTGTATCTCATCAGGAAG
20389407 ATTACCGTCT
Statistics
Matches: 1280, Mismatches: 152, Indels: 74
0.85 0.10 0.05
Matches are distributed among these distances:
713 84 0.07
714 630 0.49
715 11 0.01
716 3 0.00
717 1 0.00
719 1 0.00
722 1 0.00
723 2 0.00
728 1 0.00
729 3 0.00
731 1 0.00
732 2 0.00
733 25 0.02
734 2 0.00
735 2 0.00
738 4 0.00
739 1 0.00
740 4 0.00
745 2 0.00
746 4 0.00
747 5 0.00
748 5 0.00
749 5 0.00
750 24 0.02
751 372 0.29
752 79 0.06
753 6 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (713 bp):
CTTCTCTGTATCTCATCAGGAAGCTAACCAATTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTCAGTTGGTCTTCTTCTCTGTATCTCAT
CAGGAAGATGACCGTCTCGCTTGTTTTAGTTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
GTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTACTTCTCAGTGTC
TAATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTAT
CTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGACGA
ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCA
GTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTC
TGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAA
GATGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCT
TCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGCTCGTGTTGAGCGTTGAGTTGGTATT
Found at i:20388783 original size:399 final size:400
Alignment explanation
Indices: 20387919--20388942 Score: 1683
Period size: 399 Copynumber: 2.6 Consensus size: 400
20387909 AGTTGGTATT
* * * * *
20387919 CTTCTCTGTATCTCATCAGGAAGCCAACCATTTTATTGTTTTGATCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
*
20387984 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTCTTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * *
20388049 CAGGAAGATGACCGTCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGATGAATTCG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTG
* * *
20388114 GTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTCTCAGTGTC
196 GTCCACTTCTTTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTGTC
* *
20388179 TTATCAAGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
261 TCATCAAGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
* *
20388244 CTCATCAGGAAGATGAACGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAAGAAGACGA
326 CTCATCAGAAAGATGAACGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTCCTCAAGAAGACGA
*
20388309 ATTTGATCCA
391 ATTCGATCCA
20388319 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
* * * *
20388384 AAGAAGCTGGGTTCGAAAATTGGGTCGTGTTGAGCGTTGAGCTGGTATTCTTCTCTGCATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* *
20388449 CATGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTG
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTG
*
20388514 GTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCA-TGTC
196 GTCCACTTCTTTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTGTC
* * *
20388578 TCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTAT
261 TCATCAAGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
* *
20388643 CTCATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTTCTCAAGAAGACGA
326 CTCATCAGAAAGATGAACGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTCCTCAAGAAGACGA
*
20388708 ATTCGGTCCA
391 ATTCGATCCA
*
20388718 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTGTCTCATC
1 CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
*
20388783 AGGAAGCTGGATTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
66 AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
* * **
20388848 TAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTC-CATGGATCTCCTAAGGAAGACAAATTT
131 CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTC-TGGATCTCCTCAGGAAGATGAATTT
* *
20388912 GGTCCACTTCTTTGCGTCTAATCAGGAAGCT
195 GGTCCACTTCTTTGTGTCTCATCAGGAAGCT
20388943 GGGTTCGAAA
Statistics
Matches: 578, Mismatches: 45, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
398 1 0.00
399 341 0.59
400 236 0.41
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (400 bp):
CTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
AGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCAT
CAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTCAGGAAGATGAATTTG
GTCCACTTCTTTGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTGTC
TCATCAAGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTATAT
CTCATCAGAAAGATGAACGCCTCGCTTGTTTTAATTCACTTCTCTGGATCTCCTCAAGAAGACGA
ATTCGATCCA
Found at i:20389043 original size:152 final size:152
Alignment explanation
Indices: 20388765--20389094 Score: 527
Period size: 152 Copynumber: 2.2 Consensus size: 152
20388755 GCTTCGACCT
* * * *
20388765 ACTTCTCAGTGTCTCATCAGGAAGCTGGATTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
1 ACTTCTCTGCGTCTCATCAGGAAGCTGGATTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTA
* *
20388830 TTCTTCTCTGTATCTCATTAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCATGGATCTC
66 ATCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCATGGATCTC
20388895 CTAAGGAAGACAAATTTGGTCC
131 CTAAGGAAGACAAATTTGGTCC
* * *
20388917 ACTTCTTTGCGTCTAATCAGGAAGCTGGGTTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTA
1 ACTTCTCTGCGTCTCATCAGGAAGCTGGATTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTA
*
20388982 ATCTTCTCTGTATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTC-TGGATCT
66 ATCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTC-CATGGATCT
*
20389046 CCTTAGGAAGACAAATTTGGTCC
130 CCTAAGGAAGACAAATTTGGTCC
**
20389069 ACTTCTCTGTATCTCATCAGGAAGCT
1 ACTTCTCTGCGTCTCATCAGGAAGCT
20389095 AACTATTTTC
Statistics
Matches: 162, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
152 161 0.99
153 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (152 bp):
ACTTCTCTGCGTCTCATCAGGAAGCTGGATTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTA
ATCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCATGGATCTC
CTAAGGAAGACAAATTTGGTCC
Found at i:20389189 original size:200 final size:200
Alignment explanation
Indices: 20388927--20390494 Score: 2413
Period size: 200 Copynumber: 7.8 Consensus size: 200
20388917 ACTTCTTTGC
* * * * *
20388927 GTCTAATCAGGAAGCTGGGTTCGAAAATTGGCTCGTATTGAACGTTGAGTTGGTAATCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * *
20388992 TATCTCATCAGGAAGATGACTGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* * *
20389057 CAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACTATTTTCTTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20389122 TCAGT
196 TCAGT
* * * * * *
20389127 GTCTCATCAGGAAGCTAGGTTCGACAATTAGCTCGTGTTGAACGTTGAGTTGGTATTCTTCTCTC
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * * * *
20389192 TGTCTCTTCAGGAAAATGACTGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCCTCAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
*
20389257 CGAATTTGGTCCACTTCTCTGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20389322 TCAAG-
196 TC-AGT
* * *
20389327 GTCTCATGAGGAAGCTGGGTTCGAAAATTGACTCGTGTTGAGCATTGAGTTGATATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * * *
20389392 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* * * * *
20389457 TGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20389522 TCAGT
196 TCAGT
* *
20389527 GTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* *
20389592 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCCTTAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* *
20389657 TGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20389722 TCAAG-
196 TC-AGT
*
20389727 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * * *
20389792 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* * *
20389857 CGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20389922 TCAAG-
196 TC-AGT
* * *
20389927 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * * *
20389992 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* * * *
20390057 CGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20390122 TCAGT
196 TCAGT
* *
20390127 GTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * *
20390192 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCCTCAGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
*
20390257 CGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
20390322 TCAGT
196 TCAGT
* *
20390327 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTTTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * * * *
20390392 TATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTCCTCTGGAAGA
66 TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
* *
20390457 CAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCT
131 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCT
20390495 GGGTTCGAAA
Statistics
Matches: 1260, Mismatches: 104, Indels: 8
0.92 0.08 0.01
Matches are distributed among these distances:
199 4 0.00
200 1252 0.99
201 4 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (200 bp):
GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
TATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAGGAAGA
CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
TCAGT
Found at i:20390598 original size:152 final size:152
Alignment explanation
Indices: 20390318--20390646 Score: 552
Period size: 152 Copynumber: 2.2 Consensus size: 152
20390308 CTTCGACCTG
*
20390318 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * * * *
20390383 TCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
20390448 TC-TGGAAGACAAATTTGGTCCA
131 TCAT-GAAGACAAATTTGGTCCA
20390470 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* *
20390535 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
*
20390600 TCATGAAGACGAATTTGGTCCA
131 TCATGAAGACAAATTTGGTCCA
*
20390622 CTTCTCTGTATCTCATCAGGAAGCT
1 CTTCTCTGTGTCTCATCAGGAAGCT
20390647 AACCATTTTA
Statistics
Matches: 166, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
152 165 0.99
153 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (152 bp):
CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
TCATGAAGACAAATTTGGTCCA
Found at i:20390640 original size:552 final size:552
Alignment explanation
Indices: 20389927--20391046 Score: 1828
Period size: 552 Copynumber: 2.0 Consensus size: 552
20389917 GCTTCTCAAG
*
20389927 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
* * **
20389992 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
* *
20390057 CGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * *
20390122 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTT
196 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
* * * * *
20390187 CTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCCTCAG
261 CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
*
20390252 GAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
326 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* * *
20390317 GCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
391 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTA
* * *
20390382 TTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
456 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
20390447 CTCT-GGAAGACAAATTTGGTCCACTTCTCTGT
521 CT-TAGGAAGACAAATTTGGTCCACTTCTCTGT
* * *
20390479 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
* *
20390544 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCCTCATGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
* *
20390609 CGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * * *
20390674 TCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTTGGTATTCTT
196 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
* * * * *
20390739 CTTTATATCTCATCAGGAAAATAACCGCCTTGCTTGTTTTAATTCGTTTCTCTAGATCTCCTCTG
261 CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
20390804 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
326 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
20390869 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTA
391 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTA
* *
20390934 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTTTTTTAATTCGCTTCTCTGGATCTC
456 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
**
20390999 CTTAGGAAGATGAATTTGGTCCACTTCTCTGT
521 CTTAGGAAGACAAATTTGGTCCACTTCTCTGT
* *
20391031 ATCTCATTAGGAAGCT
1 GTCTCATCAGGAAGCT
20391047 AACCATTTTA
Statistics
Matches: 523, Mismatches: 44, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
551 1 0.00
552 522 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (552 bp):
GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTA
TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
CTTAGGAAGACAAATTTGGTCCACTTCTCTGT
Found at i:20390641 original size:352 final size:352
Alignment explanation
Indices: 20390118--20390846 Score: 1208
Period size: 352 Copynumber: 2.1 Consensus size: 352
20390108 TTTCGACCTG
*
20390118 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* * *
20390183 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
*
20390248 TCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * *
20390313 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTT
196 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
* * * * * *
20390378 GGTATTCTT-TTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGG
261 GGTATTCTTCTT-TATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAG
20390442 ATCTCCTCTGGAAGACAAATTTGGTCCA
325 ATCTCCTCTGGAAGACAAATTTGGTCCA
* * *
20390470 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* *
20390535 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
*
20390600 TCATGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
*
20390665 ACCTGCTTCTCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
196 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
* * *
20390730 GGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTTGCTTGTTTTAATTCGTTTCTCTAGA
261 GGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAGA
*
20390795 TCTCCTCTGGAAGACGAATTTGGTCCA
326 TCTCCTCTGGAAGACAAATTTGGTCCA
*
20390822 CTTCTCTGTATCTCATCAGGAAGCT
1 CTTCTCTGTGTCTCATCAGGAAGCT
20390847 AACCATTTTA
Statistics
Matches: 350, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
352 348 0.99
353 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (352 bp):
CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
GGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAGA
TCTCCTCTGGAAGACAAATTTGGTCCA
Found at i:20390825 original size:200 final size:200
Alignment explanation
Indices: 20390470--20391846 Score: 2177
Period size: 200 Copynumber: 6.9 Consensus size: 200
20390460 ATTTGGTCCA
* *
20390470 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* *
20390535 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
20390600 TCAT-GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
131 TC-TGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
20390664 GACCTG
195 GACCTG
* * * * *
20390670 CTTCTCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* * * * * *
20390735 TCTTCTTTATATCTCATCAGGAAAATAACCGCCTTGCTTGTTTTAATTCGTTTCTCTAGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
20390800 TCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
20390865 ACCTG
196 ACCTG
* *
20390870 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* *
20390935 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTTTTTTAATTCGCTTCTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* *
20391000 T-TAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATTTTATTGCTTC
131 TCT-GGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
20391064 GACCTG
195 GACCTG
*
20391070 CTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
1 CTTCTC-AGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
* * *
20391134 TTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
65 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
** * * *
20391199 CTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
130 CTCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
20391264 GACCTG
195 GACCTG
* *
20391270 CTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTA
1 CTTCTC-AGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
* * * *
20391334 TTCTTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
65 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
** * * * *
20391399 CTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTC
130 CTCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
20391464 GACCTG
195 GACCTG
* *
20391470 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* * *
20391535 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* *
20391600 TCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
20391665 ACCTG
196 ACCTG
*
20391670 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* * * * *
20391735 TCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* *
20391800 TCTGGAAGACAAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCT
131 TCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCT
20391847 GGGTTCGAAA
Statistics
Matches: 1094, Mismatches: 78, Indels: 10
0.93 0.07 0.01
Matches are distributed among these distances:
199 4 0.00
200 1088 0.99
201 2 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (200 bp):
CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
TCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTG
Found at i:20391173 original size:752 final size:752
Alignment explanation
Indices: 20389718--20391246 Score: 2515
Period size: 752 Copynumber: 2.0 Consensus size: 752
20389708 CTTCGACCTG
*
20389718 CTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
1 CTTCTC-AGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
* * **
20389782 TTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
65 TTCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTC
*
20389847 CTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTC
130 CTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* * * *
20389912 GACCTGCTTCTCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGT
195 GACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACT
* * * *
20389977 TGGTATTCTTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAG
260 TGGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAG
*
20390042 ATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATT
325 ATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
* *
20390107 GTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCAT
390 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCATGTTGAGCAT
20390172 TGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTC
455 TGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTC
* *
20390237 TCTGGATTTCCTCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATT
520 TCTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATT
20390302 TTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTG
585 TTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTG
* * * *
20390367 AGCGTTGAGTTGGTATTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTC
650 AGCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTC
* ** *
20390432 GCTTCCCTGGATCTCCTCTGGAAGACAAATTTGGTCCA
715 GCTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
* *
20390470 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
*
20390535 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* * *
20390600 TCATGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * *
20390665 ACCTGCTTCTC-AGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACT
196 ACCTGCTTCTCAAG-GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACT
* * *
20390729 TGGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTTGCTTGTTTTAATTCGTTTCTCTAG
260 TGGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAG
** * *
20390794 ATCTCCTCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
325 ATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
*
20390859 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCAT
390 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCATGTTGAGCAT
* *
20390924 TGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTTTTTTAATTCGCTTC
455 TGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTC
* * *
20390989 TCTGGATCTCCTTAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATT
520 TCTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATT
*
20391054 TTATTGCTTCGACCTGCTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTT
585 TTATTGCTTCGACCTGCTTCTC-AGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTT
* * *
20391118 GAGCATTGAGTTGGTATTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATT
649 GAGCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATT
* *
20391183 CGCTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCA
714 CGCTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
20391222 CTTCTCAGTGTCTCATCAGGAAGCT
1 CTTCTCAGTGTCTCATCAGGAAGCT
20391247 AACCATTTTA
Statistics
Matches: 718, Mismatches: 56, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
751 3 0.00
752 713 0.99
753 2 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (752 bp):
CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
TCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACTT
GGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGA
TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTG
CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCATGTTGAGCATT
GAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCT
CTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTT
TATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGA
GCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCG
CTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
Found at i:20391373 original size:952 final size:952
Alignment explanation
Indices: 20389518--20391446 Score: 3092
Period size: 952 Copynumber: 2.0 Consensus size: 952
20389508 TTTCGACCTG
20389518 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
* *
20389583 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* * *
20389648 TTAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * * *
20389713 ACCTGCTTCTCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTT
196 ACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACTT
* * * * *
20389778 GGTATTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGA
261 GGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGA
*
20389843 TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTG
326 TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTG
* * *
20389908 CTTCGACCTGCTTCTCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATT
391 CTTCGACCTGCTTCTCAAGGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCACATGTTGAGCATT
* * *
20389973 GAGTTGGTATTCTTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCT
456 GAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCT
*
20390038 CTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTT
521 CTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
*
20390103 TATTGTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
586 TATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
20390168 GCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCG
651 GCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCG
* * * * **
20390233 CTTCTCTGGATTTCCTCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAAC
716 CTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
*
20390298 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGT
781 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGT
* * * * *
20390363 GTTGAGCGTTGAGTTGGTATTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTA
846 GTTGAGCATTGAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTA
* ** *
20390428 ATTCGCTTCCCTGGATCTCCTCTGGAAGACAAATTTGGTCCA
911 ATTCGCTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
* * * *
20390470 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
*
20390535 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
*
20390600 TCATGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* *
20390665 ACCTGCTTCTC-AGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACT
196 ACCTGCTTCTCAAG-GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACT
* * *
20390729 TGGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTTGCTTGTTTTAATTCGTTTCTCTAG
260 TGGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAG
** * *
20390794 ATCTCCTCTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
325 ATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
*
20390859 GCTTCGACCTGCTTCTC-AGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCA
390 GCTTCGACCTGCTTCTCAAG-GTCTCATCAGGAAGCTGAGTTCGAAAATTGGCACATGTTGAGCA
* *
20390923 TTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTTTTTTAATTCGCTT
454 TTGAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTT
* * * * * * *
20390988 CTCTGGATCTCCTTAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCAT
519 CTCTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * *
20391053 TTTATTGCTTCGACCTGCTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGT
584 TTTATTGCTTCGACCTGCTTCTC-AGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGT
* * * *
20391117 TGAGCATTGAGTTGGTATTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAAT
648 TGAGCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAAT
*
20391182 TCGCTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCT
713 TCGCTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCT
*
20391247 AACCATTTTATTGCTTCGACCTGCTTCTCAAG-GTCTCATGAGGAAGCTGGGTTCGAAAATTGGC
778 AACCATTTTATTGCTTCGACCTGCTTCTC-AGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGC
* * *
20391311 ACGTGTTGAGCATTGAGTTGGTATTCTTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGT
842 ACGTGTTGAGCATTGAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGT
* *
20391376 TTTAATTCGCTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCA
907 TTTAATTCGCTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
20391422 CTTCTCAGTGTCTCATCAGGAAGCT
1 CTTCTCAGTGTCTCATCAGGAAGCT
20391447 AACCATTTTA
Statistics
Matches: 894, Mismatches: 79, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
951 4 0.00
952 886 0.99
953 4 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (952 bp):
CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACTT
GGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGA
TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTG
CTTCGACCTGCTTCTCAAGGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCACATGTTGAGCATT
GAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCT
CTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTT
TATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
GCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCG
CTTCTCTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGT
GTTGAGCATTGAGTTGGTATTCTTCTCTATATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTA
ATTCGCTTCCCTAGATCTCCTCAAGAAGACAAATTCGGTCCA
Found at i:20391950 original size:152 final size:152
Alignment explanation
Indices: 20391670--20391998 Score: 543
Period size: 152 Copynumber: 2.2 Consensus size: 152
20391660 CTTCGACCTG
*
20391670 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * * * *
20391735 TCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
20391800 TC-TGGAAGACAAATTTGGTCCA
131 TCAT-GAAGACAAATTTGGTCCA
20391822 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* *
20391887 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
* *
20391952 TCATGAAGACGAATTTGGTCTA
131 TCATGAAGACAAATTTGGTCCA
*
20391974 CTTCTCTGTATCTCATCAGGAAGCT
1 CTTCTCTGTGTCTCATCAGGAAGCT
20391999 AACCATTTTA
Statistics
Matches: 165, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
152 164 0.99
153 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (152 bp):
CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCCCTAGATCTCC
TCATGAAGACAAATTTGGTCCA
Found at i:20391997 original size:552 final size:552
Alignment explanation
Indices: 20391279--20392398 Score: 1790
Period size: 552 Copynumber: 2.0 Consensus size: 552
20391269 GCTTCTCAAG
*
20391279 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
* * **
20391344 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
* *
20391409 CGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * *
20391474 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTT
196 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
* * * * *
20391539 CTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCCTCAG
261 CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
*
20391604 GAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
326 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
*
20391669 GCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
391 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
*** * * * **
20391734 TTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
456 TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
* *
20391799 CTCTGGAAGACAAATTTGGTCCACTTCTCTGT
521 CTCAGGAAGACAAATTTGGTCAACTTCTCTGT
* * *
20391831 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
* *
20391896 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCCTCATGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
* * *
20391961 CGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * * *
20392026 TCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTTGGTATTCTT
196 TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
* * * **
20392091 CTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCCTTTG
261 CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
20392156 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
326 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* * *
20392221 GCTTCTCAGTGTTTCATTAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCTTTGAGTTGGTA
391 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
*
20392286 TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTC
456 TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
*
20392351 CTCAGGAAGACGAATTTGGTCAACTTCTCTGT
521 CTCAGGAAGACAAATTTGGTCAACTTCTCTGT
*
20392383 GTCTCGTCAGGAAGCT
1 GTCTCATCAGGAAGCT
20392399 AACCATTTTA
Statistics
Matches: 518, Mismatches: 50, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
552 518 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (552 bp):
GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTTCTCTA
TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
TCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTAAGCATTAACTTGGTATTCTT
CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCCTCAG
GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTA
TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGATCTC
CTCAGGAAGACAAATTTGGTCAACTTCTCTGT
Found at i:20392121 original size:352 final size:352
Alignment explanation
Indices: 20391470--20392198 Score: 1199
Period size: 352 Copynumber: 2.1 Consensus size: 352
20391460 TTTCGACCTG
*
20391470 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* * *
20391535 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
*
20391600 TCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * *
20391665 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTT
196 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
* * * * * *
20391730 GGTATTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGGA
261 GGTATTCTTTTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAGA
20391795 TCTCCTCTGGAAGACAAATTTGGTCCA
326 TCTCCTCTGGAAGACAAATTTGGTCCA
* * *
20391822 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
* *
20391887 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
* *
20391952 TCATGAAGACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
*
20392017 ACCTGCTTCTCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
196 ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
* *
20392082 GGTATTCTTCTT-TATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTTGCTTCTCTAG
261 GGTATTCTT-TTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAG
* *
20392146 ATCTCCTTTGGAAGACGAATTTGGTCCA
325 ATCTCCTCTGGAAGACAAATTTGGTCCA
*
20392174 CTTCTCTGTATCTCATCAGGAAGCT
1 CTTCTCTGTGTCTCATCAGGAAGCT
20392199 AACCATTTTA
Statistics
Matches: 349, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
352 347 0.99
353 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (352 bp):
CTTCTCTGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTGTAATTCGCTTCTCTAGATCTCC
TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTT
GGTATTCTTTTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCCCTAGA
TCTCCTCTGGAAGACAAATTTGGTCCA
Found at i:20392179 original size:200 final size:200
Alignment explanation
Indices: 20391822--20392929 Score: 1574
Period size: 200 Copynumber: 5.5 Consensus size: 200
20391812 ATTTGGTCCA
*
20391822 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* **
20391887 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
* *
20391952 TCATGAAGACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
20392017 ACCTG
196 ACCTG
* * * *
20392022 CTTCTCAGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * * * * *
20392087 TCTTCTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
**
20392152 TTTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
20392217 ACCTG
196 ACCTG
* * * *
20392222 CTTCTCAGTGTTTCATTAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCTTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * * * *
20392287 TCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
* * * *
20392352 TCAGGAAGACGAATTTGGTCAACTTCTCTGTGTCTCGTCAGGAAGCTAACCATTTTATTGTTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* *
20392417 ACTTT
196 ACCTG
* *
20392422 CTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAAATTGGCTCGTGTTGAACGTTGAGTTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * ** * *
20392487 TCTTCTCTGTATCTCATCAGGAAGATGACCACATCATTTGTTTTAATCCGCTTTTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
* * * *
20392552 TCAAGAAGACAAATTTGGTCCACTTCTCTGTATCTTATCAGGAAGCTAACCGTTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
20392617 ACCTG
196 ACCTG
* * * * ** *
20392622 TTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGTTCACGTTGAGCGTTGAATTGGTAT
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
* * *
20392687 TCTTCTCTGTATCTCATCAAGAAGATGACCGTCTCGGTTGTTTTAATTCGCTTCTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
* * *
20392752 TCAGGAAGACGAATTTGGTTCACTTCTCTGTATCTCATTAGGAAACTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
*
20392817 ACTTG
196 ACCTG
* * * * *
20392822 CTTCTCAATGTCTCATCAGGAAGCTAGGTTC-AAAGATTTGCTCGCGTTTGAGCGTTGAGTTGGC
1 CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAA-ATTGGCTCGTG-TTGAGCGTTGAGTTGGT
* * *
20392886 ATT-TTCTCTGTATCTCATCAGGAAGATTATCGCCTCAC-TGTTTT
64 ATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTT
20392930 GTTGAACTAC
Statistics
Matches: 801, Mismatches: 105, Indels: 5
0.88 0.12 0.01
Matches are distributed among these distances:
199 8 0.01
200 775 0.97
201 18 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (200 bp):
CTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCTCC
TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTG
Found at i:20392530 original size:752 final size:752
Alignment explanation
Indices: 20391079--20392598 Score: 2430
Period size: 752 Copynumber: 2.0 Consensus size: 752
20391069 GCTTCTCAAG
*
20391079 GTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* * **
20391144 TATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
*
20391209 CGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * * *
20391274 TCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATTGAGTTGGTATTCTT
196 TCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACTTGGTATTCTT
* * * *
20391339 CTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAA
261 CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAA
* *
20391404 GAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTTTCGACCT
326 GAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
20391469 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
391 GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
* * * * * *
20391534 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATTTC
456 TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATCTC
* *
20391599 CTCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
521 CTCAGGAAGACGAATTTGGTCAACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
*
20391664 GACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGT
586 GACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAACGTTGAGT
* * * * * * *
20391729 TGGTATTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTAATTCGCTTCCCTGG
651 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTTTAATCCGCTTCCCTGG
**
20391794 ATCTCCTCTGGAAGACAAATTTGGTCCACTTCTCTGT
716 ATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGT
*
20391831 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTATTCTTCTCTG
1 GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
* *
20391896 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCCTCATGAAGA
66 TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
* * *
20391961 CGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
131 CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
* * *
20392026 TC-AGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACTTGGTATTCT
196 TCAAG-GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACTTGGTATTCT
* * **
20392090 TCTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTTGCTTCTCTAGATCTCCTTT
260 TCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCA
* * *
20392155 GGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACC
325 AGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACC
* * * *
20392220 TGCTTCTCAGTGTTTCATTAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCTTTGAGTTGGT
390 TGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGT
*
20392285 ATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCTCTGGATCT
455 ATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATCT
* * *
20392350 CCTCAGGAAGACGAATTTGGTCAACTTCTCTGTGTCTCGTCAGGAAGCTAACCATTTTATTGTTT
520 CCTCAGGAAGACGAATTTGGTCAACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTT
* * *
20392415 CGACTTTCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAAATTGGCTCGTGTTGAACGTTGAG
585 CGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAACGTTGAG
* **
20392480 TTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCATTTGTTTTAATCCGCTTTTCTG
650 TTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTTTAATCCGCTTCCCTG
20392545 GATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGT
715 GATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGT
* *
20392583 ATCTTATCAGGAAGCT
1 GTCTCATCAGGAAGCT
20392599 AACCGTTTTA
Statistics
Matches: 701, Mismatches: 66, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
751 2 0.00
752 699 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (752 bp):
GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTATTCTTCTCTG
TATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAAGAAGA
CGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTC
TCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCACGTGTTAAGCATTAACTTGGTATTCTT
CTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCCTCAA
GAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGAGCATTGAGTTGGTA
TTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTGTAATTCGCTTCTCTGGATCTC
CTCAGGAAGACGAATTTGGTCAACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
GACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAACGTTGAGT
TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTTTAATCCGCTTCCCTGG
ATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGT
Found at i:20392730 original size:952 final size:952
Alignment explanation
Indices: 20390870--20392795 Score: 3028
Period size: 952 Copynumber: 2.0 Consensus size: 952
20390860 CTTCGACCTG
*
20390870 CTTCTCAGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
* * *
20390935 TCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTTTTTTAATTCGCTTCTCTGGATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* * *
20391000 TTAGGAAGATGAATTTGGTCCACTTCTCTGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* * * *
20391065 ACCTGCTTCTCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCATTGAGTT
196 ACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACTT
* * * * *
20391130 GGTATTCTTCTCTGTATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCTCTAGA
261 GGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGA
*
20391195 TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTG
326 TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTG
*
20391260 CTTCGACCTGCTTCTCAAGGTCTCATGAGGAAGCTGGGTTCGAAAATTGGCACGTGTTGAGCATT
391 CTTCGACCTGCTTCTCAAGGTCTCATGAGGAAGCTGAGTTCGAAAATTGGCACGTGTTGAGCATT
* * * * * *
20391325 GAGTTGGTATTCTTCTCTATATCTTATCAGGAAGATTACCGTCTCGCTTGTTTTAATTCGCTTCT
456 GAGTTGGTATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCT
*
20391390 CTAGATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTT
521 CTAGATCTCCTCAAGAAGACGAATTCGGTCAACTTCTCAGTGTCTCATCAGGAAGCTAACCATTT
20391455 TATTGTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
586 TATTGTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
* * * * *
20391520 GCATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTGTAATTCG
651 ACATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTGTAATCCG
* * * *
20391585 CTTCTCTGGATTTCCTCAGGAAGACGAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAAC
716 CTTCTCTGGATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAAC
**
20391650 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGT
781 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCAC
* * * * *
20391715 GTTGAGCGTTGAGTTGGTATTCTTTTCTGTATCTCATTAGGGAGATGACCGCCTCGCTTGTTTTA
846 GTTGAGCGTTGAATTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTGTTTTA
*
20391780 ATTCGCTTCCCTGGATCTCCTCTGGAAGACAAATTTGGTCCA
911 ATTCGCTTCCCTGGATCTCCTCAGGAAGACAAATTTGGTCCA
* * *
20391822 CTTCTCTGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTGAGCGTTGAGTTGGTAT
1 CTTCTCTGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
*
20391887 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTATATCTCC
66 TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
* *
20391952 TCATGAAGACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
131 TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
* *
20392017 ACCTGCTTCTC-AGTGTTTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCGTTAACT
196 ACCTGCTTCTCAAG-GTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACT
* *
20392081 TGGTATTCTTCTTTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTTGCTTCTCTAG
260 TGGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAG
*** * *
20392146 ATCTCCTTTGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
325 ATCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATT
* * * *
20392211 GCTTCGACCTGCTTCTC-AGTGTTTCATTAGGAAGCTGAGTTCGAAAATTGGCTCGTGTTGAGCT
390 GCTTCGACCTGCTTCTCAAG-GTCTCATGAGGAAGCTGAGTTCGAAAATTGGCACGTGTTGAGCA
20392275 TTGAGTTGGTATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTT
454 TTGAGTTGGTATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTT
* * * * *
20392340 CTCTGGATCTCCTCAGGAAGACGAATTTGGTCAACTTCTCTGTGTCTCGTCAGGAAGCTAACCAT
519 CTCTAGATCTCCTCAAGAAGACGAATTCGGTCAACTTCTCAGTGTCTCATCAGGAAGCTAACCAT
* * * * *
20392405 TTTATTGTTTCGACTTTCTTCTCAGTGTCTCATCAGGAAGTTGGGTTCGAAAATTGGCTCGTGTT
584 TTTATTGTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTT
* * *
20392470 GAACGTTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCATTTGTTTTAATC
649 GAACATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTGTAATC
* *
20392535 CGCTTTTCTGGATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGTATCTTATCAGGAAGCTA
714 CGCTTCTCTGGATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTA
* * * * *
20392600 ACCGTTTTATTGCTTCGACCTGTTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGTTC
779 ACCATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTC
* *
20392665 ACGTTGAGCGTTGAATTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGTCTCGGTTGTTT
844 ACGTTGAGCGTTGAATTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTGTTT
* * *
20392730 TAATTCGCTTCTCTGGATCTCCTCAGGAAGACGAATTTGGTTCA
909 TAATTCGCTTCCCTGGATCTCCTCAGGAAGACAAATTTGGTCCA
* *
20392774 CTTCTCTGTATCTCATTAGGAA
1 CTTCTCTGTGTCTCATCAGGAA
20392796 ACTAACCATT
Statistics
Matches: 884, Mismatches: 88, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
951 4 0.00
952 880 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (952 bp):
CTTCTCTGTGTCTCATCAGGAAGCTGAGTTCGAAAATTGGCTCATGTTGAGCATTGAGTTGGTAT
TCTTCTCTGTATCTCATCAGGAAGATGACCACCTCGCTTGTTTTAATTCGCTTCTCTAGATCTCC
TCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
ACCTGCTTCTCAAGGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCGTGTTAAGCATTAACTT
GGTATTCTTCTCTATATCTCATCAGGAAAATAACCGCCTCGCTTGTTTTAATTCGCTTCTCTAGA
TCTCCTCAAGAAGACGAATTCGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTG
CTTCGACCTGCTTCTCAAGGTCTCATGAGGAAGCTGAGTTCGAAAATTGGCACGTGTTGAGCATT
GAGTTGGTATTCTCCCCTATATCTAATCAGAAAGATGACCGCCTCGCTTGTTTTAATTCGCTTCT
CTAGATCTCCTCAAGAAGACGAATTCGGTCAACTTCTCAGTGTCTCATCAGGAAGCTAACCATTT
TATTGTTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGAGTTAGAAAATTGGCTCGTGTTGA
ACATTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTGTTGTAATCCG
CTTCTCTGGATCTCCTCAAGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAAC
CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAAATTGGCTCAC
GTTGAGCGTTGAATTGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCGCTTGTTTTA
ATTCGCTTCCCTGGATCTCCTCAGGAAGACAAATTTGGTCCA
Found at i:20401893 original size:59 final size:58
Alignment explanation
Indices: 20401825--20401987 Score: 169
Period size: 58 Copynumber: 2.8 Consensus size: 58
20401815 TTCGGGGGCA
* * *
20401825 AAAAT-GTAATTTTGGGAAAATTCAGGGTTAAAAATGAGATTTTAGAAGGTTCGA-GGGT
1 AAAATGGTAATTTTGGGAAAATTCGGGGTTAAAAATG-GATTTTAGAAAGTTC-ATGGAT
* * *
20401883 AAAATGGTAATTTTGGTAAAATT-GGGGTCAAAAATGGAATTTTGGAAAGTTCATGGAT
1 AAAATGGTAATTTTGGGAAAATTCGGGGTTAAAAATGG-ATTTTAGAAAGTTCATGGAT
20401941 AAAATGGTAATTTTTGGTG-AAA-TCGGGGTT-AAAATGGGATTTT-GAAA
1 AAAATGGTAA-TTTTGG-GAAAATTCGGGGTTAAAAAT-GGATTTTAGAAA
20401988 AGCTCGGGGG
Statistics
Matches: 90, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
57 6 0.07
58 52 0.58
59 32 0.36
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (58 bp):
AAAATGGTAATTTTGGGAAAATTCGGGGTTAAAAATGGATTTTAGAAAGTTCATGGAT
Found at i:20401974 original size:30 final size:29
Alignment explanation
Indices: 20401882--20401977 Score: 81
Period size: 30 Copynumber: 3.3 Consensus size: 29
20401872 GGTTCGAGGG
* *
20401882 TAAAATGGTAATTTTGGTAAAATTGGGGT
1 TAAAATGGTAATTTTGGTGAAATCGGGGT
* ** *
20401911 CAAAAATGG-AATTTT-G-GAAAGTTCATGGA
1 -TAAAATGGTAATTTTGGTGAAA--TCGGGGT
20401940 TAAAATGGTAATTTTTGGTGAAATCGGGGT
1 TAAAATGGTAA-TTTTGGTGAAATCGGGGT
20401970 TAAAATGG
1 TAAAATGG
20401978 GATTTTGAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
27 3 0.06
28 8 0.16
29 11 0.22
30 23 0.46
31 1 0.02
32 4 0.08
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.33
Consensus pattern (29 bp):
TAAAATGGTAATTTTGGTGAAATCGGGGT
Found at i:20402002 original size:58 final size:59
Alignment explanation
Indices: 20401879--20402013 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 59
20401869 GAAGGTTCGA
* * * *
20401879 GGGTAAAATGGTAA-TTTTGGTAAAATTGGGGTCAAAAATGGAATTTTGGAAAGTTCAT
1 GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTCAAAAATGGAATTTTGAAAAGCTCAG
* * * * *
20401937 GGATAAAATGGTAATTTTTGGTGAAATCGGGGT-TAAAATGGGATTTTGAAAAGCTCGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTCAAAAATGGAATTTTGAAAAGCTCAG
**
20401995 GGGTAAAAACGTAATTTTT
1 GGGTAAAATGGTAATTTTT
20402014 AAAAAGCTCG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 48 0.75
59 16 0.25
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTCAAAAATGGAATTTTGAAAAGCTCAG
Found at i:20402011 original size:29 final size:30
Alignment explanation
Indices: 20401980--20402047 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
20401970 TAAAATGGGA
* *
20401980 TTTTGAAAAGCTCGGGGGTAAAAACGTAAT
1 TTTTGAAAAGCTCGAGGGTAAAAACATAAT
* *
20402010 TTTTAAAAAGCTCGAGGGTAAAAATATAAT
1 TTTTGAAAAGCTCGAGGGTAAAAACATAAT
20402040 TTTTGAAA
1 TTTTGAAA
20402048 GTTTCAGGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (30 bp):
TTTTGAAAAGCTCGAGGGTAAAAACATAAT
Found at i:20402048 original size:29 final size:29
Alignment explanation
Indices: 20401980--20402073 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 29
20401970 TAAAATGGGA
* **
20401980 TTTTGAAAAGCTCGGGGGTAAAAACGTAAT
1 TTTTG-AAAGCTCGAGGGTAAAAATATAAT
*
20402010 TTTTAAAAAGCTCGAGGGTAAAAATATAAT
1 TTTT-GAAAGCTCGAGGGTAAAAATATAAT
* * *
20402040 TTTTGAAAGTTTC-AGGGTCAAAATACAAT
1 TTTTGAAAG-CTCGAGGGTAAAAATATAAT
20402069 TTTTG
1 TTTTG
20402074 GGAATTTTAG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
29 23 0.43
30 31 0.57
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (29 bp):
TTTTGAAAGCTCGAGGGTAAAAATATAAT
Found at i:20403967 original size:17 final size:17
Alignment explanation
Indices: 20403945--20403989 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
20403935 TTGGACATTT
* *
20403945 AATTTATATTTATTTTA
1 AATTTAAATTTATATTA
20403962 AATTTAAATTTATATTA
1 AATTTAAATTTATATTA
*
20403979 AGTTTAAATTT
1 AATTTAAATTT
20403990 TGGAAAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (17 bp):
AATTTAAATTTATATTA
Found at i:20403971 original size:23 final size:22
Alignment explanation
Indices: 20403941--20403989 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
20403931 GTATTTGGAC
* *
20403941 ATTTAATTTATATTTATTTTAA
1 ATTTAATTTATATTAAGTTTAA
20403963 ATTTAAATTTATATTAAGTTTAA
1 ATTT-AATTTATATTAAGTTTAA
20403986 ATTT
1 ATTT
20403990 TGGAAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTTAATTTATATTAAGTTTAA
Found at i:20413138 original size:24 final size:23
Alignment explanation
Indices: 20413109--20413165 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
20413099 TTTTTTTTAA
*
20413109 ATTTAATTTAATATAATTATTTTT
1 ATTTAATTTAATATAA-AATTTTT
20413133 ATTTAATATTAATATAAAATTTTT
1 ATTTAAT-TTAATATAAAATTTTT
20413157 ATTTAATTT
1 ATTTAATTT
20413166 TATAACAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 2 0.06
24 20 0.65
25 9 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTAATTTAATATAAAATTTTT
Found at i:20413210 original size:18 final size:16
Alignment explanation
Indices: 20413183--20413223 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
20413173 ATTACTTATA
20413183 AATTTATAATACATTTT
1 AATTTATAATA-ATTTT
*
20413200 ATATTTTTAATAATTTT
1 A-ATTTATAATAATTTT
20413217 AATTTAT
1 AATTTAT
20413224 TTTAAGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 9 0.43
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTATAATAATTTT
Found at i:20422529 original size:36 final size:36
Alignment explanation
Indices: 20422477--20422553 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
20422467 ATATAATCAG
* * *
20422477 TCACATGGCATTAAGAACATACCCACATATTCTCTA
1 TCACATGGCATGAAGAACACACCCACATATTCACTA
* * *
20422513 TCACATTGCATGAAGAACACACCTACATATTCACTT
1 TCACATGGCATGAAGAACACACCCACATATTCACTA
20422549 TCACA
1 TCACA
20422554 ACAGTCATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (36 bp):
TCACATGGCATGAAGAACACACCCACATATTCACTA
Found at i:20422658 original size:23 final size:23
Alignment explanation
Indices: 20422639--20422747 Score: 155
Period size: 23 Copynumber: 4.7 Consensus size: 23
20422629 CACAAATAAA
*
20422639 ATTAATATTTAAGCATAAATCAC
1 ATTAATATTTAAGCATAAATCAT
*
20422662 ACTAATATTTAAGCATAAATCAT
1 ATTAATATTTAAGCATAAATCAT
* *
20422685 ATTAATATTTGAGCACAAATCAT
1 ATTAATATTTAAGCATAAATCAT
* **
20422708 ATTAACATTTAATAATAAATCAT
1 ATTAATATTTAAGCATAAATCAT
20422731 ATTAATATTTAAGCATA
1 ATTAATATTTAAGCATA
20422748 GTTATAAGAA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.37
Consensus pattern (23 bp):
ATTAATATTTAAGCATAAATCAT
Found at i:20425811 original size:80 final size:79
Alignment explanation
Indices: 20425466--20425835 Score: 487
Period size: 79 Copynumber: 4.7 Consensus size: 79
20425456 AGTTTAACTG
* * * * *
20425466 ACTAGAGTTGGACTCACAATT-ACGATTTATCCGCTAGCCACTGGGTGCCAGGACTTGACGGATA
1 ACTAGAGCTGGGCTCACAATTGA-GGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGGATA
20425530 TTGTTGGTTAATCCA
65 TTGTTGGTTAATCCA
* * * *
20425545 ACTAGAG--AGGCTCACAATTGTGGTTTATCCGCTAGGCACTGGGTGTCAAGATTTGACGGATAT
1 ACTAGAGCTGGGCTCACAATTGAGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGGATAT
20425608 TGTTGGTTAATCCA
66 TGTTGGTTAATCCA
* * * *
20425622 ACTAGAGCTGGGTTCACAATTGTA-GTTTATCCGCTAGGCACTGGATGCCAAGATTTGTCGGATA
1 ACTAGAGCTGGGCTCACAATTG-AGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGGATA
20425686 TTGTTGGTTAATCCA
65 TTGTTGGTTAATCCA
* * * *
20425701 ACTAGAGCTGGGCTCACAATTGCGGGTTATCCGCTAGGCACTGGGTGTCAGGATTTGACGGTTAT
1 ACTAGAGCTGGGCTCACAATTGAGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGGATA-
20425766 TTGTTGGTTAATCCA
65 TTGTTGGTTAATCCA
* * ** *
20425781 ACTAGAGTTTGGCTCACTTTTGAGGTTTATCAGCTAGGCACTGGGTGCCAGGATT
1 ACTAGAGCTGGGCTCACAATTGAGGTTTATCCGCTAGGCACTGGGTGCCAGGATT
20425836 GTCGGTTTAT
Statistics
Matches: 255, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
77 68 0.27
79 125 0.49
80 62 0.24
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (79 bp):
ACTAGAGCTGGGCTCACAATTGAGGTTTATCCGCTAGGCACTGGGTGCCAGGATTTGACGGATAT
TGTTGGTTAATCCA
Found at i:20425838 original size:158 final size:156
Alignment explanation
Indices: 20425466--20425840 Score: 506
Period size: 156 Copynumber: 2.4 Consensus size: 156
20425456 AGTTTAACTG
* * * *
20425466 ACTAGAGTTGGACTCACAA-T-TACGATTTATCCGCTAGCCACTGGGTGCCAGGACTTGACGGAT
1 ACTAGAGCTGGGCTCACAATTGTA-G-TTTATCCGCTAGGCACTGGGTGCCAGGACTTGTCGGAT
* *
20425529 ATTGTTGGTTAATCCAACTAGAGAGGCTCACAATTGTGGTTTATCCGCTAGGCACTGGGTGTCAA
64 ATTGTTGGTTAATCCAACTAGAGAGGCTCACAATTGCGGGTTATCCGCTAGGCACTGGGTGTCAA
20425594 GATTTGACGGATATTGTTGGTTAATCCA
129 GATTTGACGGATATTGTTGGTTAATCCA
* * * *
20425622 ACTAGAGCTGGGTTCACAATTGTAGTTTATCCGCTAGGCACTGGATGCCAAGATTTGTCGGATAT
1 ACTAGAGCTGGGCTCACAATTGTAGTTTATCCGCTAGGCACTGGGTGCCAGGACTTGTCGGATAT
* *
20425687 TGTTGGTTAATCCAACTAGAGCTGGGCTCACAATTGCGGGTTATCCGCTAGGCACTGGGTGTCAG
66 TGTTGGTTAATCCAACTAGAG--AGGCTCACAATTGCGGGTTATCCGCTAGGCACTGGGTGTCAA
*
20425752 GATTTGACGGTTATTTGTTGGTTAATCCA
129 GATTTGACGGATA-TTGTTGGTTAATCCA
* * ** *
20425781 ACTAGAGTTTGGCTCACTTTTG-AGGTTTATCAGCTAGGCACTGGGTGCCAGGA-TTGTCGG
1 ACTAGAGCTGGGCTCACAATTGTA-GTTTATCCGCTAGGCACTGGGTGCCAGGACTTGTCGG
20425841 TTTATCCGAC
Statistics
Matches: 192, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
156 72 0.38
157 2 0.01
158 60 0.31
159 58 0.30
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (156 bp):
ACTAGAGCTGGGCTCACAATTGTAGTTTATCCGCTAGGCACTGGGTGCCAGGACTTGTCGGATAT
TGTTGGTTAATCCAACTAGAGAGGCTCACAATTGCGGGTTATCCGCTAGGCACTGGGTGTCAAGA
TTTGACGGATATTGTTGGTTAATCCA
Found at i:20427877 original size:11 final size:11
Alignment explanation
Indices: 20427857--20427886 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
20427847 ATATATATAA
*
20427857 TATAAAAAACT
1 TATAAGAAACT
20427868 TATAAGAAACT
1 TATAAGAAACT
20427879 TATAAGAA
1 TATAAGAA
20427887 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (11 bp):
TATAAGAAACT
Found at i:20431366 original size:20 final size:20
Alignment explanation
Indices: 20431287--20431393 Score: 74
Period size: 20 Copynumber: 5.2 Consensus size: 20
20431277 GGCCTGAAGC
*
20431287 TATTTTGACTTGTTTGAAAAA
1 TATTTTGACTTGTTT-AAAAT
* **
20431308 CATTTTGAAGTG-TTAAAAT
1 TATTTTGACTTGTTTAAAAT
* * *
20431327 GATTTTAACTTAG-TTCAAAT
1 TATTTTGACTT-GTTTAAAAT
*
20431347 TATTTTGACATGTTTAAAAT
1 TATTTTGACTTGTTTAAAAT
* *
20431367 CATTTTAACTTGATTTTAAAAT
1 TATTTTGACTTG--TTTAAAAT
20431389 TATTT
1 TATTT
20431394 CAAACTTTTC
Statistics
Matches: 65, Mismatches: 17, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
19 12 0.18
20 32 0.49
21 9 0.14
22 12 0.18
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.49
Consensus pattern (20 bp):
TATTTTGACTTGTTTAAAAT
Found at i:20431469 original size:26 final size:26
Alignment explanation
Indices: 20431410--20431460 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20431400 TTTCTAAGAG
20431410 TTTAAGATAAGAATTTAAATTTTATA
1 TTTAAGATAAGAATTTAAATTTTATA
20431436 TTTAAGATAAGAATTTAAATTTTAT
1 TTTAAGATAAGAATTTAAATTTTAT
20431461 CTCTTAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (26 bp):
TTTAAGATAAGAATTTAAATTTTATA
Found at i:20433266 original size:53 final size:53
Alignment explanation
Indices: 20433206--20433312 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
20433196 TGATATCCGG
*
20433206 TCATAAACCTAAAATAAAATAATGGACGAAAAATAGAGGAGGAAGAAACATCA
1 TCATAAACCTAAAATAAAATAATGGACCAAAAATAGAGGAGGAAGAAACATCA
20433259 TCATAAACCTAAAATAAAATAATGGACCAAAAATAGAGGAGGAAGAAACATCA
1 TCATAAACCTAAAATAAAATAATGGACCAAAAATAGAGGAGGAAGAAACATCA
20433312 T
1 T
20433313 GCAATCGGTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.16
Consensus pattern (53 bp):
TCATAAACCTAAAATAAAATAATGGACCAAAAATAGAGGAGGAAGAAACATCA
Found at i:20433469 original size:88 final size:88
Alignment explanation
Indices: 20433320--20433496 Score: 354
Period size: 88 Copynumber: 2.0 Consensus size: 88
20433310 CATGCAATCG
20433320 GTGATGGCTTCGAACCAGTTCTTATATTCCAAAATTGATGAAGTTTGATAAAGTTTGGCGAGTTG
1 GTGATGGCTTCGAACCAGTTCTTATATTCCAAAATTGATGAAGTTTGATAAAGTTTGGCGAGTTG
20433385 GCCTTCAGGTGACTCCAGTTCAC
66 GCCTTCAGGTGACTCCAGTTCAC
20433408 GTGATGGCTTCGAACCAGTTCTTATATTCCAAAATTGATGAAGTTTGATAAAGTTTGGCGAGTTG
1 GTGATGGCTTCGAACCAGTTCTTATATTCCAAAATTGATGAAGTTTGATAAAGTTTGGCGAGTTG
20433473 GCCTTCAGGTGACTCCAGTTCAC
66 GCCTTCAGGTGACTCCAGTTCAC
20433496 G
1 G
20433497 AGAACGAAAA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (88 bp):
GTGATGGCTTCGAACCAGTTCTTATATTCCAAAATTGATGAAGTTTGATAAAGTTTGGCGAGTTG
GCCTTCAGGTGACTCCAGTTCAC
Found at i:20434665 original size:31 final size:32
Alignment explanation
Indices: 20434630--20434693 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
20434620 ATTATAATCT
* *
20434630 AGTCACT-AAGCTATTTGAAA-TTTTTTATTTA
1 AGTCACTGAA-CTATTCGAAAGTTTCTTATTTA
*
20434661 AGTCACTGAATTATTCGAAAGTTTCTTATTTA
1 AGTCACTGAACTATTCGAAAGTTTCTTATTTA
20434693 A
1 A
20434694 ATTACTGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (32 bp):
AGTCACTGAACTATTCGAAAGTTTCTTATTTA
Found at i:20434701 original size:32 final size:31
Alignment explanation
Indices: 20434641--20434701 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
20434631 GTCACTAAGC
* * *
20434641 TATTTGAAATTTTTTATTTAAGTCACTGAAT
1 TATTCGAAATTTCTTATTTAAATCACTGAAT
*
20434672 TATTCGAAAGTTTCTTATTTAAATTACTGA
1 TATTCGAAA-TTTCTTATTTAAATCACTGA
20434702 GTTGTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (31 bp):
TATTCGAAATTTCTTATTTAAATCACTGAAT
Found at i:20435563 original size:98 final size:99
Alignment explanation
Indices: 20435368--20435694 Score: 498
Period size: 98 Copynumber: 3.3 Consensus size: 99
20435358 CCAAAAAAAA
*
20435368 TAAAACCGAAAACTCATCTTTACTCCATGGGTATCAGTTTCTTTTCTTTTTCTTTTTTTTAATTT
1 TAAAACCGAAAACCCATCTTTACTCCATGGGTATCAGTTTCTTTTC-TTTTC-TTTTTTTAATTT
*
20435433 CTCGAGCTTTTACATTTCAAAAATGATA-GACAAAGC
64 CTCGAGCTTTTACAATTCAAAAATGA-AGGACAAAGC
* *
20435469 TAAAA-CGAAAACCCATTTTTGCTCCATGGGTATCAGTTTCTTTTCTTTTCTTTTTTTAATTTCT
1 TAAAACCGAAAACCCATCTTTACTCCATGGGTATCAGTTTCTTTTCTTTTCTTTTTTTAATTTCT
20435533 CGAGCTTTTACAATTCAAAAATGAAGGACAAAGC
66 CGAGCTTTTACAATTCAAAAATGAAGGACAAAGC
** * *
20435567 TAAAATTGAAAAACCATCTTTACTCCATGGGTATCAATTTCTTTTCTTTT-TTTTTTTAATTTCT
1 TAAAACCGAAAACCCATCTTTACTCCATGGGTATCAGTTTCTTTTCTTTTCTTTTTTTAATTTCT
* **
20435631 CGAGCTTTTACAGTTCAAAAATGGCGGACAAAGC
66 CGAGCTTTTACAATTCAAAAATGAAGGACAAAGC
*
20435665 TAAAACTGAAAACCCATCTTTACTCCATGG
1 TAAAACCGAAAACCCATCTTTACTCCATGG
20435695 AAAATACTAG
Statistics
Matches: 210, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
97 1 0.00
98 123 0.59
99 44 0.21
100 37 0.18
101 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (99 bp):
TAAAACCGAAAACCCATCTTTACTCCATGGGTATCAGTTTCTTTTCTTTTCTTTTTTTAATTTCT
CGAGCTTTTACAATTCAAAAATGAAGGACAAAGC
Found at i:20450092 original size:29 final size:29
Alignment explanation
Indices: 20450053--20450177 Score: 121
Period size: 30 Copynumber: 4.2 Consensus size: 29
20450043 AAAATTATGT
20450053 TTTGACCCCTAAATTTTCTAAAAATTCAAA
1 TTTGA-CCCTAAATTTTCTAAAAATTCAAA
* *
20450083 TTTGACCCTAAAATTTTCCAAAAATTCCAA
1 TTTGACCCT-AAATTTTCTAAAAATTCAAA
* *
20450113 TTTGACCCTAAAATTTCTAAAAA--AAATTA
1 TTTGACCCTAAATTTTCTAAAAATTCAA--A
* *
20450142 TTTGACCCCTAAAGTTTTC-AAAATTTCAAC
1 TTTGA-CCCTAAA-TTTTCTAAAAATTCAAA
20450172 TTTGAC
1 TTTGAC
20450178 TCGATTTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
27 1 0.01
29 23 0.29
30 48 0.62
31 4 0.05
32 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (29 bp):
TTTGACCCTAAATTTTCTAAAAATTCAAA
Found at i:20450253 original size:27 final size:28
Alignment explanation
Indices: 20450223--20450413 Score: 104
Period size: 28 Copynumber: 6.4 Consensus size: 28
20450213 TATATGCATA
*
20450223 TGTATAT-TATTTTATTGTATTGTATTT
1 TGTATATGTATTTTATTCTATTGTATTT
* *
20450250 TGTATATGTATTATT-TTCTATAATGTGTATA
1 TGTATATGTATT-TTATTCTAT--TGTAT-TT
*
20450281 TGTATAT-TATTTTATTTTATTGTATTT
1 TGTATATGTATTTTATTCTATTGTATTT
* * *
20450308 TGTATATGTATTATTTTTTTATTATGTATACT
1 TGTATATGTATT-TTATTCTA-T-TGTAT-TT
* * *
20450340 TGTAAATCATGTGCATATT-TTCTATTATGTGTATA
1 TGT--AT-ATGT--ATTTTATTCTA-T-TGTAT-TT
*
20450375 TGTATAT-TATTTTATTTTATTGTATTT
1 TGTATATGTATTTTATTCTATTGTATTT
20450402 TGTATATGTATT
1 TGTATATGTATT
20450414 ATTTTTTTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 35
0.71 0.09 0.19
Matches are distributed among these distances:
27 23 0.18
28 25 0.19
29 16 0.12
30 18 0.14
31 14 0.11
32 6 0.05
33 2 0.02
34 2 0.02
35 19 0.15
36 2 0.02
37 2 0.02
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.61
Consensus pattern (28 bp):
TGTATATGTATTTTATTCTATTGTATTT
Found at i:20450326 original size:18 final size:17
Alignment explanation
Indices: 20450277--20450336 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 17
20450267 CTATAATGTG
*
20450277 TATATGTA-TATTATTT
1 TATATGTATTATTTTTT
* * *
20450293 TAT-TTTATTGTATTTTG
1 TATATGTATTAT-TTTTT
20450310 TATATGTATTATTTTTT
1 TATATGTATTATTTTTT
20450327 TATTATGTAT
1 TA-TATGTAT
20450337 ACTTGTAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
15 3 0.09
16 5 0.15
17 12 0.36
18 13 0.39
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (17 bp):
TATATGTATTATTTTTT
Found at i:20450335 original size:24 final size:26
Alignment explanation
Indices: 20450221--20450337 Score: 89
Period size: 27 Copynumber: 4.3 Consensus size: 26
20450211 TTTATATGCA
*
20450221 TATGTATATTATTTTATTGTATTGTAT
1 TATGTATATTA-TTTATTTTATTGTAT
* *
20450248 TTTGTATATGTA-TTATTTTCTATAATGTGT
1 TATGTATAT-TATTTA-TTT-TAT--TGTAT
20450278 ATATGTATATTATTTTATTTTATTGTAT
1 -TATGTATATTA-TTTATTTTATTGTAT
*
20450306 TTTGTATATGTA-TTATTTT-TT-TAT
1 TATGTATAT-TATTTATTTTATTGTAT
20450330 TATGTATA
1 TATGTATA
20450338 CTTGTAAATC
Statistics
Matches: 74, Mismatches: 7, Indels: 21
0.73 0.07 0.21
Matches are distributed among these distances:
24 10 0.14
25 2 0.03
26 10 0.14
27 18 0.24
28 11 0.15
30 9 0.12
31 11 0.15
32 3 0.04
ACGTcount: A:0.26, C:0.01, G:0.10, T:0.63
Consensus pattern (26 bp):
TATGTATATTATTTATTTTATTGTAT
Found at i:20450369 original size:35 final size:35
Alignment explanation
Indices: 20450322--20450464 Score: 94
Period size: 35 Copynumber: 4.4 Consensus size: 35
20450312 TATGTATTAT
*
20450322 TTTTTTATTATGTATACTTGTAAATCATGTGCATA
1 TTTTCTATTATGTATACTTGTAAATCATGTGCATA
* * * *
20450357 TTTTCTATTATGTGTA-TATGTATATTAT-T--TTA
1 TTTTCTATTATGTATACT-TGTAAATCATGTGCATA
* ** *
20450389 -TTT-TA-T-TGTAT-TTTGT--AT-ATGTATTATT
1 TTTTCTATTATGTATACTTGTAAATCATGT-GCATA
*
20450417 TTTTTTATTATGTATACTTGTAAATCATGTGCATA
1 TTTTCTATTATGTATACTTGTAAATCATGTGCATA
20450452 TTTTCTATTATGT
1 TTTTCTATTATGT
20450465 GTATATGTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 28
0.66 0.11 0.23
Matches are distributed among these distances:
24 2 0.02
25 3 0.04
27 3 0.04
28 6 0.07
29 4 0.05
30 4 0.05
31 4 0.05
32 7 0.09
33 4 0.05
34 2 0.02
35 38 0.47
36 4 0.05
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.59
Consensus pattern (35 bp):
TTTTCTATTATGTATACTTGTAAATCATGTGCATA
Found at i:20450438 original size:27 final size:27
Alignment explanation
Indices: 20450364--20450438 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
20450354 ATATTTTCTA
* *
20450364 TTATGTGTA-TATGTATATTATTTTATT
1 TTAT-TGTATTATGTATATTGTATTATT
*
20450391 TTATTGTATTTTGTATA-TGTATTATT
1 TTATTGTATTATGTATATTGTATTATT
*
20450417 TT-TTTTATTATGTATACTTGTA
1 TTATTGTATTATGTATA-TTGTA
20450439 AATCATGTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 12 0.30
26 13 0.32
27 15 0.38
ACGTcount: A:0.24, C:0.01, G:0.11, T:0.64
Consensus pattern (27 bp):
TTATTGTATTATGTATATTGTATTATT
Found at i:20450471 original size:95 final size:95
Alignment explanation
Indices: 20450261--20450549 Score: 544
Period size: 95 Copynumber: 3.1 Consensus size: 95
20450251 GTATATGTAT
*
20450261 TATTTTCTATAATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTA-TTTT
1 TATTTTCTATTATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTATTTTT
20450325 TTTATTATGTATACTTGTAAATCATGTGCA
66 TTTATTATGTATACTTGTAAATCATGTGCA
20450355 TATTTTCTATTATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTATTTTT
1 TATTTTCTATTATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTATTTTT
20450420 TTTATTATGTATACTTGTAAATCATGTGCA
66 TTTATTATGTATACTTGTAAATCATGTGCA
* *
20450450 TATTTTCTATTATGTGTATATGTATATTATTTTATTTCATTGTATTTTGTATATGTATTATTGTT
1 TATTTTCTATTATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTATTTTT
20450515 TTTATTATGTATACTTGTAAATCATGTGCA
66 TTTATTATGTATACTTGTAAATCATGTGCA
20450545 TATTT
1 TATTT
20450550 CTTGCATAAC
Statistics
Matches: 191, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
94 59 0.31
95 132 0.69
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (95 bp):
TATTTTCTATTATGTGTATATGTATATTATTTTATTTTATTGTATTTTGTATATGTATTATTTTT
TTTATTATGTATACTTGTAAATCATGTGCA
Found at i:20464604 original size:7 final size:7
Alignment explanation
Indices: 20464594--20464634 Score: 50
Period size: 6 Copynumber: 6.0 Consensus size: 7
20464584 AAAAAATTGA
20464594 AAAAAGG
1 AAAAAGG
20464601 AAAAAGAG
1 AAAAAG-G
20464609 AAAAA-G
1 AAAAAGG
20464615 AAAAA-G
1 AAAAAGG
*
20464621 AAAAAGA
1 AAAAAGG
20464628 AAAAAGG
1 AAAAAGG
20464635 GAGGTCGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 12 0.40
7 12 0.40
8 6 0.20
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAAAAGG
Found at i:20464618 original size:20 final size:19
Alignment explanation
Indices: 20464594--20464633 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 19
20464584 AAAAAATTGA
20464594 AAAAAGGAAAAAGAGAAAAAG
1 AAAAA-GAAAAAGA-AAAAAG
20464615 AAAAAGAAAAAGAAAAAAG
1 AAAAAGAAAAAGAAAAAAG
20464634 GGAGGTCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 8 0.42
21 5 0.26
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAAGAAAAAAG
Found at i:20464624 original size:5 final size:6
Alignment explanation
Indices: 20464602--20464631 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
20464592 GAAAAAAGGA
20464602 AAAAGAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAA-AG AAAAAG AAAAAG AAAAAG AAAAA
20464632 AGGGAGGTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:20464632 original size:14 final size:14
Alignment explanation
Indices: 20464592--20464625 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20464582 AAAAAAAATT
*
20464592 GAAAAAAGGAAAAA
1 GAAAAAAAGAAAAA
*
20464606 GAGAAAAAGAAAAA
1 GAAAAAAAGAAAAA
20464620 GAAAAA
1 GAAAAA
20464626 GAAAAAAGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
GAAAAAAAGAAAAA
Found at i:20465735 original size:49 final size:49
Alignment explanation
Indices: 20465516--20465727 Score: 192
Period size: 49 Copynumber: 4.3 Consensus size: 49
20465506 TCTACTGGTT
* * ** *
20465516 TGAAGGGAAAAATTGAAGCCACAATGGTAAATC-TGATACCCTAGAGATA
1 TGAAGGGAAAGATTGAAGCCGCAATGGCGAACCTTG-TACCCTAGAGATA
* * * * * **
20465565 TGAAGAGAAAGGTTGAAGCCGCAATGGCGAACCTTATACCTTAGGGACG
1 TGAAGGGAAAGATTGAAGCCGCAATGGCGAACCTTGTACCCTAGAGATA
* * ** * * *
20465614 TGATGGGAAAGATTGAAGCCGCGACAGTGAATCTTGTACCCTAGAGTTA
1 TGAAGGGAAAGATTGAAGCCGCAATGGCGAACCTTGTACCCTAGAGATA
* * * *
20465663 TGAGGGGAAAGGTTGAAGTCGCAATGGCGAACCTTGTACCCTAGAGATG
1 TGAAGGGAAAGATTGAAGCCGCAATGGCGAACCTTGTACCCTAGAGATA
*
20465712 TGAAGGGAAATATTGA
1 TGAAGGGAAAGATTGA
20465728 GGTCGCAACG
Statistics
Matches: 123, Mismatches: 39, Indels: 2
0.75 0.24 0.01
Matches are distributed among these distances:
49 122 0.99
50 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.21
Consensus pattern (49 bp):
TGAAGGGAAAGATTGAAGCCGCAATGGCGAACCTTGTACCCTAGAGATA
Found at i:20465743 original size:98 final size:98
Alignment explanation
Indices: 20465516--20465746 Score: 268
Period size: 98 Copynumber: 2.4 Consensus size: 98
20465506 TCTACTGGTT
* * ** *
20465516 TGAAGGGAAAAATTGAAGCCACAATGGTAAATC-TGATACCCTAGAGATATGAAGAGAAAGGTTG
1 TGAAGGGAAAGATTGAAGCCGCAACAGTGAATCTTG-TACCCTAGAGATATGAAGAGAAAGGTTG
* *
20465580 AAGCCGCAATGGCGAACCTTATACCTTAGGGACG
65 AAGCCGCAATGGCGAACCTTATACCCTAGAGACG
* * * * *
20465614 TGATGGGAAAGATTGAAGCCGCGACAGTGAATCTTGTACCCTAGAGTTATGAGGGGAAAGGTTGA
1 TGAAGGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCCTAGAGATATGAAGAGAAAGGTTGA
* * *
20465679 AGTCGCAATGGCGAACCTTGTACCCTAGAGATG
66 AGCCGCAATGGCGAACCTTATACCCTAGAGACG
* * *
20465712 TGAAGGGAAATATTGAGGTCGCAAC-GATGAATCTT
1 TGAAGGGAAAGATTGAAGCCGCAACAG-TGAATCTT
20465747 ACACCTTGAA
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
97 1 0.01
98 108 0.97
99 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.22
Consensus pattern (98 bp):
TGAAGGGAAAGATTGAAGCCGCAACAGTGAATCTTGTACCCTAGAGATATGAAGAGAAAGGTTGA
AGCCGCAATGGCGAACCTTATACCCTAGAGACG
Found at i:20466086 original size:40 final size:40
Alignment explanation
Indices: 20466031--20466238 Score: 174
Period size: 40 Copynumber: 5.2 Consensus size: 40
20466021 TACAATCATC
* *
20466031 CAATCTGTTACCCTAATCAGAGGGTAGATTAAAGACCATT
1 CAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATT
* * *
20466071 CAATCTTTTACCCTAATCAGAGAGCAGATTGAAGACCATC
1 CAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATT
** * * * *
20466111 CAATCTTTTACCCCGA-CCGTGGGGCT-GATTGAAG-CAATC
1 CAATCTTTTACCCTAATCAG-AGGG-TAGATTGAAGACCATT
** ** *
20466150 CAATCTTTTACTTTAAAAAGAGGGCAGATTGAAGACCATT
1 CAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATT
* * *
20466190 -AGATCTTTTACCCTAACCAGAGGGTAAATTGAAAACCA-T
1 CA-ATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATT
20466229 CAGATCTTTT
1 CA-ATCTTTT
20466239 TGAAGGCAAT
Statistics
Matches: 132, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
39 31 0.23
40 101 0.77
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
CAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATT
Found at i:20466221 original size:79 final size:80
Alignment explanation
Indices: 20466027--20466222 Score: 202
Period size: 79 Copynumber: 2.5 Consensus size: 80
20466017 AAGTTACAAT
* * * * * **
20466027 CATCCAATCTGTTACCCTAATCAGAGGGTAGATTAAAGACCATTCAATCTTTTACCCTAATCAGA
1 CATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAGACAATCCAATCTTTTACCCTAAAAAGA
20466092 GAGCAGATTGAAGAC
66 GAGCAGATTGAAGAC
** * **
20466107 CATCCAATCTTTTACCCCGACC-GTGGGGCT-GATTGAAG-CAATCCAATCTTTTACTTTAAAAA
1 CATCCAATCTTTTACCCTAACCAG-AGGG-TAGATTGAAGACAATCCAATCTTTTACCCTAAAAA
*
20466169 GAGGGCAGATTGAAGAC
64 GAGAGCAGATTGAAGAC
* *
20466186 CAT-TAGATCTTTTACCCTAACCAGAGGGTAAATTGAA
1 CATCCA-ATCTTTTACCCTAACCAGAGGGTAGATTGAA
20466223 AACCATCAGA
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
78 2 0.02
79 61 0.66
80 29 0.31
81 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (80 bp):
CATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAGACAATCCAATCTTTTACCCTAAAAAGA
GAGCAGATTGAAGAC
Found at i:20466283 original size:40 final size:40
Alignment explanation
Indices: 20466238--20466657 Score: 266
Period size: 40 Copynumber: 10.6 Consensus size: 40
20466228 TCAGATCTTT
* *
20466238 TTGAAGGCAATCCAATCTTTTACCCTAATCAGAGGGTAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * ** *
20466278 TTGAAGACCATTCAATCTTTTACCCCGACCATG-GGGCAAA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* * * * *
20466318 TTGAA-GCAATCCAATGTTTTATCCTAACCAAAGGACAAA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * * ** *
20466357 TTGAAGACCATCCGATCTCTTACCCCGACCATAGGGCAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
*
20466397 TTGAA-GCAATCTAATCTTTTACCCTAACCAGAGGGCAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * ** * *
20466436 TTGAAGACTATCTGATCTCTTATCCC-AACCATG-GGGCATA
1 TTGAAGGCAATCCAATCTTTTA-CCCTAACCA-GAGGGCAGA
* * * * *
20466476 TTGAA-ACAATCTAACCTTTTACCCTAACCAAAGGGCAAA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * ** * ***
20466515 TTAAAGACCATCTGATCTCTTACCCCGGCCATG-GGGCAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCA-GAGGGCAGA
*
20466555 TTGAA-GCAATCCAATCTTTTACCCTAACTAGAGGGCAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * ** **
20466594 TTGAAGACCATCAAATCTCCTACCCCGACCATGA-GGCAGA
1 TTGAAGGCAATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* *
20466634 TTGAA-ACAATCCAATATTTTACCC
1 TTGAAGGCAATCCAATCTTTTACCC
20466658 CTAAAGTTAT
Statistics
Matches: 287, Mismatches: 80, Indels: 27
0.73 0.20 0.07
Matches are distributed among these distances:
38 4 0.01
39 129 0.45
40 147 0.51
41 7 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (40 bp):
TTGAAGGCAATCCAATCTTTTACCCTAACCAGAGGGCAGA
Found at i:20466319 original size:100 final size:99
Alignment explanation
Indices: 20466139--20466322 Score: 255
Period size: 100 Copynumber: 1.8 Consensus size: 99
20466129 GTGGGGCTGA
** *
20466139 TTGAAGCAATCCAATCTTTTACTTTAAAAAGAGGGCAGATTGAAGACCATTAGATCTTTTACCCT
1 TTGAAGCAATCCAATCTTTTACCCTAAAAAGAGGGCAGATTGAAGACCATTAGATCTTTTACCCC
*
20466204 AACCAGAGGGTAAATTGAAAACCATCAGATCTTT
66 AACCAGAGGGCAAATTGAAAACCATCAGATCTTT
** *
20466238 TTGAAGGCAATCCAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCATTCA-ATCTTTTACC
1 TTGAA-GCAATCCAATCTTTTACCCTAAAAAGAGGGCAGATTGAAGACCATT-AGATCTTTTACC
*
20466302 CCGACCATG-GGGCAAATTGAA
64 CCAACCA-GAGGGCAAATTGAA
20466323 GCAATCCAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
99 5 0.07
100 67 0.91
101 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (99 bp):
TTGAAGCAATCCAATCTTTTACCCTAAAAAGAGGGCAGATTGAAGACCATTAGATCTTTTACCCC
AACCAGAGGGCAAATTGAAAACCATCAGATCTTT
Found at i:20466338 original size:79 final size:79
Alignment explanation
Indices: 20466238--20466657 Score: 536
Period size: 79 Copynumber: 5.3 Consensus size: 79
20466228 TCAGATCTTT
* * * *
20466238 TTGAAGGCAATCCAATCTTTTACCCTAATCAGAGGGTAGATTGAAGACCAT-TCAATCTTTTACC
1 TTGAA-GCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCT-GATCTCTTACC
*
20466302 CCGACCATGGGGCAAA
64 CCGACCATGGGGCAGA
* * * * * *
20466318 TTGAAGCAATCCAATGTTTTATCCTAACCAAAGGACAAATTGAAGACCATCCGATCTCTTACCCC
1 TTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCTGATCTCTTACCCC
*
20466383 GACCATAGGGCAGA
66 GACCATGGGGCAGA
* * *
20466397 TTGAAGCAATCTAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACTATCTGATCTCTTATCCC
1 TTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCTGATCTCTTACCCC
* *
20466462 AACCATGGGGCATA
66 GACCATGGGGCAGA
* * * * * *
20466476 TTGAAACAATCTAACCTTTTACCCTAACCAAAGGGCAAATTAAAGACCATCTGATCTCTTACCCC
1 TTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCTGATCTCTTACCCC
*
20466541 GGCCATGGGGCAGA
66 GACCATGGGGCAGA
* ** *
20466555 TTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCAAATCTCCTACCCC
1 TTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCTGATCTCTTACCCC
*
20466620 GACCATGAGGCAGA
66 GACCATGGGGCAGA
* *
20466634 TTGAAACAATCCAATATTTTACCC
1 TTGAAGCAATCCAATCTTTTACCC
20466658 CTAAAGTTAT
Statistics
Matches: 291, Mismatches: 48, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
79 286 0.98
80 5 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (79 bp):
TTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCTGATCTCTTACCCC
GACCATGGGGCAGA
Found at i:20469119 original size:30 final size:30
Alignment explanation
Indices: 20469044--20469260 Score: 258
Period size: 30 Copynumber: 7.3 Consensus size: 30
20469034 AAAATTATGT
* * * **
20469044 TTTGATCCTTAAACTTTCTAAAAATTTGAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
* * *
20469074 TTTAACCC-CAAATTTTCCAAAAATTCAAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
* *
20469103 TTTGACCTTTAAATTTTCTAAAAATTCCAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
*
20469133 TTTGACCCTTAAATTTTCTAAAAATTCCAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
* * *
20469163 TTTAACCCTAAAATTTTCCAAAAATTCTAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
*
20469193 TTTGACCCTTAAACTTTCCAAAAATTCCAA
1 TTTGACCCTTAAATTTTCCAAAAATTCCAA
* *
20469223 TTTGACCCCTAAAGTTTT-CAAAAATTCAAA
1 TTTGACCCTTAAA-TTTTCCAAAAATTCCAA
20469253 TTTGACCC
1 TTTGACCC
20469261 AATTTTAATG
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
29 22 0.14
30 136 0.84
31 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.37
Consensus pattern (30 bp):
TTTGACCCTTAAATTTTCCAAAAATTCCAA
Found at i:20469217 original size:90 final size:89
Alignment explanation
Indices: 20469044--20469262 Score: 305
Period size: 90 Copynumber: 2.4 Consensus size: 89
20469034 AAAATTATGT
* * ** *
20469044 TTTGATCCTTAAACTTTCTAAAAATTTGAATTTAACCCCAAATTTTCCAAAAATTCAAATTTGAC
1 TTTGACCCTTAAATTTTCTAAAAATTCAAATTTAACCCAAAATTTTCCAAAAATTCAAATTTGAC
* * *
20469109 CTTTAAATTTTCTAAAAATTCCAA
66 CCTTAAACTTTCCAAAAATTCCAA
* *
20469133 TTTGACCCTTAAATTTTCTAAAAATTCCAATTTAACCCTAAAATTTTCCAAAAATTCTAATTTGA
1 TTTGACCCTTAAATTTTCTAAAAATTCAAATTTAACCC-AAAATTTTCCAAAAATTCAAATTTGA
20469198 CCCTTAAACTTTCCAAAAATTCCAA
65 CCCTTAAACTTTCCAAAAATTCCAA
* *
20469223 TTTGACCCCTAAAGTTTTC-AAAAATTCAAATTTGACCCAA
1 TTTGACCCTTAAA-TTTTCTAAAAATTCAAATTTAACCCAA
20469263 TTTTAATGTA
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
89 36 0.31
90 75 0.65
91 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.37
Consensus pattern (89 bp):
TTTGACCCTTAAATTTTCTAAAAATTCAAATTTAACCCAAAATTTTCCAAAAATTCAAATTTGAC
CCTTAAACTTTCCAAAAATTCCAA
Found at i:20469358 original size:24 final size:26
Alignment explanation
Indices: 20469302--20469360 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
20469292 TTTATATGCA
20469302 TATGTATATTATTTTATTTTATTGTAT
1 TATGTATATTA-TTTATTTTATTGTAT
*
20469329 TTTGTATATGTA-TTATTTT-TT-TAT
1 TATGTATAT-TATTTATTTTATTGTAT
20469353 TATGTATA
1 TATGTATA
20469361 CTTGTAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 10 0.34
25 2 0.07
26 7 0.24
27 8 0.28
28 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.66
Consensus pattern (26 bp):
TATGTATATTATTTATTTTATTGTAT
Found at i:20473355 original size:14 final size:14
Alignment explanation
Indices: 20473335--20473377 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
20473325 TCGACCCGAC
20473335 CCATTGACCGTTGA
1 CCATTGACCGTTGA
* *
20473349 TCATTGACAGTTGA
1 CCATTGACCGTTGA
* *
20473363 CCGTTGACCATTGA
1 CCATTGACCGTTGA
20473377 C
1 C
20473378 TTTTTTCAGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (14 bp):
CCATTGACCGTTGA
Found at i:20473364 original size:21 final size:21
Alignment explanation
Indices: 20473338--20473377 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
20473328 ACCCGACCCA
*
20473338 TTGACCGTTGATCATTGACAG
1 TTGACCGTTGACCATTGACAG
20473359 TTGACCGTTGACCATTGAC
1 TTGACCGTTGACCATTGAC
20473378 TTTTTTCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.33
Consensus pattern (21 bp):
TTGACCGTTGACCATTGACAG
Found at i:20475556 original size:24 final size:24
Alignment explanation
Indices: 20475524--20475577 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
20475514 TTACTGATGA
20475524 GAAAGAGAAGTGCGATTAGTTTAG
1 GAAAGAGAAGTGCGATTAGTTTAG
*
20475548 GAAAGAGAAGTGTGATTAGTTTAG
1 GAAAGAGAAGTGCGATTAGTTTAG
20475572 GAAAGA
1 GAAAGA
20475578 ACTGCGACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.02, G:0.33, T:0.24
Consensus pattern (24 bp):
GAAAGAGAAGTGCGATTAGTTTAG
Found at i:20480331 original size:17 final size:17
Alignment explanation
Indices: 20480286--20480343 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 17
20480276 CCCGACCCAA
* * *
20480286 ACCCGTTGATCAACTCG
1 ACCCGTTGACCGACTTG
* *
20480303 ACCCTTTAACCGACTTG
1 ACCCGTTGACCGACTTG
20480320 ACCCGTTGACCG--TTG
1 ACCCGTTGACCGACTTG
20480335 A-CCGTTGAC
1 ACCCGTTGAC
20480344 TTTTTTCAGG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
14 8 0.24
15 4 0.12
17 22 0.65
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.26
Consensus pattern (17 bp):
ACCCGTTGACCGACTTG
Found at i:20486860 original size:23 final size:19
Alignment explanation
Indices: 20486811--20486848 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20486801 CCCTATTGTA
20486811 CCACAAAGTTAAATATCAT
1 CCACAAAGTTAAATATCAT
*
20486830 CCACAAAGTTGAATATCAT
1 CCACAAAGTTAAATATCAT
20486849 TCCATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (19 bp):
CCACAAAGTTAAATATCAT
Found at i:20488578 original size:16 final size:16
Alignment explanation
Indices: 20488521--20488599 Score: 63
Period size: 16 Copynumber: 4.9 Consensus size: 16
20488511 TACTTTTTCT
* *
20488521 TTCTATTTTTACATCA
1 TTCTAATTTTCCATCA
* * *
20488537 TTCTAATATTCTATTCT
1 TTCTAATTTTCCA-TCA
20488554 TTC-AATTTTCCATCA
1 TTCTAATTTTCCATCA
* *
20488569 TTCTAATTTTCTATTCT
1 TTCTAATTTTCCA-TCA
20488586 TTC-AATTTTCCATC
1 TTCTAATTTTCCATC
20488600 CTTTCAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
15 7 0.14
16 32 0.65
17 10 0.20
ACGTcount: A:0.23, C:0.22, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCTAATTTTCCATCA
Found at i:20488603 original size:16 final size:15
Alignment explanation
Indices: 20488551--20488611 Score: 77
Period size: 16 Copynumber: 3.9 Consensus size: 15
20488541 AATATTCTAT
20488551 TCTTTCAATTTTCCA
1 TCTTTCAATTTTCCA
* *
20488566 TCATTCTAATTTTCTA
1 TCTTTC-AATTTTCCA
20488582 TTCTTTCAATTTTCCA
1 -TCTTTCAATTTTCCA
20488598 TCCTTTCAATTTTC
1 T-CTTTCAATTTTC
20488612 TTTCCAATCT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
15 6 0.15
16 28 0.72
17 5 0.13
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.56
Consensus pattern (15 bp):
TCTTTCAATTTTCCA
Found at i:20488609 original size:32 final size:32
Alignment explanation
Indices: 20488517--20488612 Score: 131
Period size: 32 Copynumber: 3.0 Consensus size: 32
20488507 AAATTACTTT
* * *
20488517 TTCTTTCTATTTTTACATCATTCTAATATTCTA
1 TTCTTTC-AATTTTCCATCATTCTAATTTTCTA
20488550 TTCTTTCAATTTTCCATCATTCTAATTTTCTA
1 TTCTTTCAATTTTCCATCATTCTAATTTTCTA
*
20488582 TTCTTTCAATTTTCCATCCTT-TCAATTTTCT
1 TTCTTTCAATTTTCCATCATTCT-AATTTTCT
20488613 TTCCAATCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
31 1 0.02
32 50 0.86
33 7 0.12
ACGTcount: A:0.21, C:0.22, G:0.00, T:0.57
Consensus pattern (32 bp):
TTCTTTCAATTTTCCATCATTCTAATTTTCTA
Found at i:20490075 original size:51 final size:49
Alignment explanation
Indices: 20490008--20490117 Score: 123
Period size: 52 Copynumber: 2.2 Consensus size: 49
20489998 TAGCAAACAC
*
20490008 ATATAAAAAATAAGATCGATATAAAA-TATTATAAACAAATATTTATATTT
1 ATAT-AAAAATAAGATCGAAATAAAACTATT-TAAACAAATATTTATATTT
* * * *
20490058 ATGTAAAAATAACAGATCTAAATAAAATCTATTTAAATAAATATTTATTTTT
1 ATATAAAAAT-A-AGATCGAAATAAAA-CTATTTAAACAAATATTTATATTT
20490110 ATATAAAA
1 ATATAAAA
20490118 CATCAGATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
49 6 0.12
50 4 0.08
51 12 0.24
52 24 0.48
53 4 0.08
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.37
Consensus pattern (49 bp):
ATATAAAAATAAGATCGAAATAAAACTATTTAAACAAATATTTATATTT
Found at i:20490111 original size:52 final size:50
Alignment explanation
Indices: 20490034--20490199 Score: 158
Period size: 50 Copynumber: 3.2 Consensus size: 50
20490024 CGATATAAAA
* *
20490034 TATTATAAACAAATATTTATATTTATGTAAAA-ATAACAGATCTAAATAAAATC
1 TATT-TAAATAAATATTTATATTTATATAAAACAT--CAGATCTAAA-AAAATC
* * *
20490087 TATTTAAATAAATATTTATTTTTATATAAAACATCAGATTTAAACAAATC
1 TATTTAAATAAATATTTATATTTATATAAAACATCAGATCTAAAAAAATC
* * *
20490137 -ACGTTAAATAATTATTTATATTTATTTAAAACATCAGATCTTGAAAATAAAT-
1 TA-TTTAAATAAATATTTATATTTATATAAAACATCAGATC-T-AAAA-AAATC
*
20490189 TAATTAAATAA
1 TATTTAAATAA
20490200 TATCTGAAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
49 1 0.01
50 38 0.40
51 10 0.11
52 35 0.37
53 11 0.12
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (50 bp):
TATTTAAATAAATATTTATATTTATATAAAACATCAGATCTAAAAAAATC
Found at i:20491653 original size:41 final size:41
Alignment explanation
Indices: 20491603--20491766 Score: 186
Period size: 41 Copynumber: 4.0 Consensus size: 41
20491593 AATATGAGAA
20491603 AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTC
1 AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTC
* * * ** * *
20491644 AGAGTATTAGCGGCGTTTATGAGAAAGTGCCACTAAAGATC
1 AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTC
* * **
20491685 AGAGGATTAGCGGCGCTTATGAGAAAGCGCCGCTAAAGGTC
1 AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTC
* *
20491726 AGAGCATTAGC-AGCACTTATGGGAAAAACGCCGCTAAAGGT
1 AGAGCATTAGCGA-CGCTTATGAGAAAAA-GCCGCTAAAGGT
20491767 TAAGCAATAG
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 91 0.88
42 12 0.12
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (41 bp):
AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTC
Found at i:20491778 original size:82 final size:82
Alignment explanation
Indices: 20491603--20491781 Score: 207
Period size: 82 Copynumber: 2.2 Consensus size: 82
20491593 AATATGAGAA
* * * **
20491603 AGAGCATTAGCGACGCTTATGAGAAAAAGCCGCTAAAGGTCAGAGTATTAGCGGCGTTTATGAGA
1 AGAGCATTAGCGGCGCTTATGAGAAAAAGCCGCTAAAGGTCAGAGCATTAGCAGCACTTATGAGA
**
20491668 AAGTGCCACTAAAGATC
66 AAACGCCACTAAAGATC
* ** *
20491685 AGAGGATTAGCGGCGCTTATGAGAAAGCGCCGCTAAAGGTCAGAGCATTAGCAGCACTTATGGGA
1 AGAGCATTAGCGGCGCTTATGAGAAAAAGCCGCTAAAGGTCAGAGCATTAGCAGCACTTATGAG-
* * *
20491750 AAAACGCCGCTAAAGGTT
65 AAAACGCCACTAAAGATC
*
20491768 A-AGCAATAGCGGCG
1 AGAGCATTAGCGGCG
20491782 TTTTCCCATA
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
82 66 0.82
83 14 0.17
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.18
Consensus pattern (82 bp):
AGAGCATTAGCGGCGCTTATGAGAAAAAGCCGCTAAAGGTCAGAGCATTAGCAGCACTTATGAGA
AAACGCCACTAAAGATC
Found at i:20493510 original size:23 final size:22
Alignment explanation
Indices: 20493469--20493512 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20493459 TTTTCCTGCT
*
20493469 TTTTTAGTATGTGCTTTCTTTC
1 TTTTTAGTATGTGCATTCTTTC
*
20493491 TTTTTAGTATGTTCAATTCTTT
1 TTTTTAGTATGTGC-ATTCTTT
20493513 TTAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.14, C:0.11, G:0.11, T:0.64
Consensus pattern (22 bp):
TTTTTAGTATGTGCATTCTTTC
Found at i:20495870 original size:43 final size:43
Alignment explanation
Indices: 20495809--20496120 Score: 378
Period size: 43 Copynumber: 7.3 Consensus size: 43
20495799 TCTGTTAATA
* * *
20495809 TTAGCGGTGTTTGTGGGAAAAGCGCCTCTAAAGACCATTTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
* * *
20495852 TTAGCAGCGTTTGTGGGAAAAGCTCCACTAAAGACCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
* *
20495895 TTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGACCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
* * * *
20495938 TTAGCGGCATTTATGGAAAAAGCGTCGCTAAAGACCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
* * *
20495981 TTTGCGGCTTTTGTAGGG-AAAGCACCGCTAAAGACCATGTTCT
1 TTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGACCATGTTCT
* *
20496024 TTAGCGGCGTTTGTAGGG-AAAGCCCCACTAAAGACCATGTTCT
1 TTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGACCATGTTCT
* * * *
20496067 TTAGCGGCGTTTATGGG-AAAGCACCGTTAAAGATCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
* *
20496109 ATAGCGACGTTT
1 TTAGCGGCGTTT
20496121 TTCCTCATAA
Statistics
Matches: 235, Mismatches: 33, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
42 34 0.14
43 199 0.85
44 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCT
Found at i:20498876 original size:47 final size:48
Alignment explanation
Indices: 20498816--20498919 Score: 147
Period size: 48 Copynumber: 2.2 Consensus size: 48
20498806 TTGAATCATG
* * *
20498816 TGAATCATCGTTGTC-GGCCATTCGAGATGGTAATATAGTGAATGGTA
1 TGAACCATCGTTGTCAGGCCATCCGAGATGGTAATATACTGAATGGTA
* *
20498863 TGAACCATCGTTGTCAGGTCATCCGGGATGGTAATATACTGAATGGTA
1 TGAACCATCGTTGTCAGGCCATCCGAGATGGTAATATACTGAATGGTA
*
20498911 TAAACCATC
1 TGAACCATC
20498920 ATATTAGGGC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 14 0.28
48 36 0.72
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
TGAACCATCGTTGTCAGGCCATCCGAGATGGTAATATACTGAATGGTA
Found at i:20498939 original size:48 final size:48
Alignment explanation
Indices: 20498841--20498954 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
20498831 GGCCATTCGA
* * * *
20498841 GATGGTAATATAGTGAATGGTATGAACCATCGTTGTCAGGTCATCCGG
1 GATGGTAATATACTGAATGGTATAAACCATCATTGTCAGGGCATCCGG
*
20498889 GATGGTAATATACTGAATGGTATAAACCATCATAT-T-AGGGCTATCTGG
1 GATGGTAATATACTGAATGGTATAAACCATCAT-TGTCAGGGC-ATCCGG
* *
20498937 GATGGTAATTTATTGAAT
1 GATGGTAATATACTGAAT
20498955 TGTGAGAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
47 4 0.07
48 52 0.91
49 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.32
Consensus pattern (48 bp):
GATGGTAATATACTGAATGGTATAAACCATCATTGTCAGGGCATCCGG
Found at i:20500607 original size:18 final size:19
Alignment explanation
Indices: 20500570--20500612 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
20500560 TGATTTGTTG
*
20500570 AATA-TAATTAAATATATT
1 AATATTAATTAAAAATATT
*
20500588 AA-ATTAATTAAAAATTTT
1 AATATTAATTAAAAATATT
20500606 AATATTA
1 AATATTA
20500613 TAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 16 0.76
19 4 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATTAATTAAAAATATT
Found at i:20501548 original size:15 final size:16
Alignment explanation
Indices: 20501530--20501560 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
20501520 AAGCTTTAAT
20501530 GTCCAAATTA-CAAAA
1 GTCCAAATTACCAAAA
20501545 GTCCAAATTACCAAAA
1 GTCCAAATTACCAAAA
20501561 AGACTTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.23, G:0.06, T:0.19
Consensus pattern (16 bp):
GTCCAAATTACCAAAA
Found at i:20502849 original size:306 final size:306
Alignment explanation
Indices: 20502296--20502908 Score: 1226
Period size: 306 Copynumber: 2.0 Consensus size: 306
20502286 AAGAGTAAAA
20502296 GTAATAACACAAAAGCAAGAATAGATTTTAAACAAAAAAGAAACTAAAACAACAAAATTTAAGGG
1 GTAATAACACAAAAGCAAGAATAGATTTTAAACAAAAAAGAAACTAAAACAACAAAATTTAAGGG
20502361 ACAACAAGGACGGTCTTTAAAATAATAAGAAATAAAAATAGATGCAAAAAGATGATGTCCCCAAT
66 ACAACAAGGACGGTCTTTAAAATAATAAGAAATAAAAATAGATGCAAAAAGATGATGTCCCCAAT
20502426 CATTTTACCGAGATCTAGGCTCGATCTAGCAGGATCCGAGACTAGATCTATTTTTTAAAAAAGAG
131 CATTTTACCGAGATCTAGGCTCGATCTAGCAGGATCCGAGACTAGATCTATTTTTTAAAAAAGAG
20502491 AGAGATGAAAAGGGACCCTTTTTACCTTGATGGCTCCCTATACGATGGTCGGACGGAGGTGTGAA
196 AGAGATGAAAAGGGACCCTTTTTACCTTGATGGCTCCCTATACGATGGTCGGACGGAGGTGTGAA
20502556 ACGACGTTCGCGGACGGTGGCTCAACGGTGGATGGTAATGCTACTC
261 ACGACGTTCGCGGACGGTGGCTCAACGGTGGATGGTAATGCTACTC
20502602 GTAATAACACAAAAGCAAGAATAGATTTTAAACAAAAAAGAAACTAAAACAACAAAATTTAAGGG
1 GTAATAACACAAAAGCAAGAATAGATTTTAAACAAAAAAGAAACTAAAACAACAAAATTTAAGGG
20502667 ACAACAAGGACGGTCTTTAAAATAATAAGAAATAAAAATAGATGCAAAAAGATGATGTCCCCAAT
66 ACAACAAGGACGGTCTTTAAAATAATAAGAAATAAAAATAGATGCAAAAAGATGATGTCCCCAAT
20502732 CATTTTACCGAGATCTAGGCTCGATCTAGCAGGATCCGAGACTAGATCTATTTTTTAAAAAAGAG
131 CATTTTACCGAGATCTAGGCTCGATCTAGCAGGATCCGAGACTAGATCTATTTTTTAAAAAAGAG
20502797 AGAGATGAAAAGGGACCCTTTTTACCTTGATGGCTCCCTATACGATGGTCGGACGGAGGTGTGAA
196 AGAGATGAAAAGGGACCCTTTTTACCTTGATGGCTCCCTATACGATGGTCGGACGGAGGTGTGAA
20502862 ACGACGTTCGCGGACGGTGGCTCAACGGTGGATGGTAATGCTACTC
261 ACGACGTTCGCGGACGGTGGCTCAACGGTGGATGGTAATGCTACTC
20502908 G
1 G
20502909 ACGGCTATGC
Statistics
Matches: 307, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
306 307 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (306 bp):
GTAATAACACAAAAGCAAGAATAGATTTTAAACAAAAAAGAAACTAAAACAACAAAATTTAAGGG
ACAACAAGGACGGTCTTTAAAATAATAAGAAATAAAAATAGATGCAAAAAGATGATGTCCCCAAT
CATTTTACCGAGATCTAGGCTCGATCTAGCAGGATCCGAGACTAGATCTATTTTTTAAAAAAGAG
AGAGATGAAAAGGGACCCTTTTTACCTTGATGGCTCCCTATACGATGGTCGGACGGAGGTGTGAA
ACGACGTTCGCGGACGGTGGCTCAACGGTGGATGGTAATGCTACTC
Found at i:20503564 original size:29 final size:30
Alignment explanation
Indices: 20503518--20503594 Score: 106
Period size: 29 Copynumber: 2.6 Consensus size: 30
20503508 CCACGAATTC
20503518 TTCAAAAATTACATTTTAACCTCTAAACTT
1 TTCAAAAATTACATTTTAACCTCTAAACTT
20503548 TTCAAAAA-T-CATTTTTAACCTCTAAACTT
1 TTCAAAAATTACA-TTTTAACCTCTAAACTT
*
20503577 TT-AGAAATTACCATTTTA
1 TTCAAAAATTA-CATTTTA
20503595 CCCTTGAATG
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
28 6 0.14
29 21 0.50
30 13 0.31
31 2 0.05
ACGTcount: A:0.39, C:0.18, G:0.01, T:0.42
Consensus pattern (30 bp):
TTCAAAAATTACATTTTAACCTCTAAACTT
Found at i:20503634 original size:59 final size:60
Alignment explanation
Indices: 20503551--20503774 Score: 221
Period size: 59 Copynumber: 3.8 Consensus size: 60
20503541 TAAACTTTTC
* * * *
20503551 AAAAAT-CATTTTTAACCTCTAAACTTTT-AGAAATTACCATTTTACCCTTGAATGTCCA
1 AAAAATCCATTTTTGACCCCGAAACTTTTCAAAAATTACCATTTTACCCTTGAATGTCCA
* * * **
20503609 AAAAATCTATTTTTGACCCCGAAAC-TTCCAAAAATTACCATTGTACCC-CAAGATGTCCA
1 AAAAATCCATTTTTGACCCCGAAACTTTTCAAAAATTACCATTTTACCCTTGA-ATGTCCA
* * * *
20503668 AAAATTCCATTTTTGACCTC-AAA-TTTTCCAAAAATTATCATTTTACCCTTGGATGTCC-
1 AAAAATCCATTTTTGACCCCGAAACTTTT-CAAAAATTACCATTTTACCCTTGAATGTCCA
* * *
20503726 AAAAATACCATTTTTGATCCTG-AATTTTTCAAAAATTACCATTTTACCC
1 AAAAAT-CCATTTTTGACCCCGAAACTTTTCAAAAATTACCATTTTACCC
20503775 CCAGACATCC
Statistics
Matches: 134, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
58 19 0.14
59 111 0.83
60 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (60 bp):
AAAAATCCATTTTTGACCCCGAAACTTTTCAAAAATTACCATTTTACCCTTGAATGTCCA
Found at i:20503700 original size:30 final size:29
Alignment explanation
Indices: 20503605--20503817 Score: 114
Period size: 29 Copynumber: 7.2 Consensus size: 29
20503595 CCCTTGAATG
* * *
20503605 TCCAAAAAATCTATTTTTGACCCCGAAACT
1 TCCAAAAATTCCATTTTTGACCCC-AAATT
* *
20503635 TCCAAAAATTACCA-TTGT-ACCCCAAGATG
1 TCCAAAAATT-CCATTTTTGACCCCAA-ATT
*
20503664 TCCAAAAATTCCATTTTTGACCTCAAATTT
1 TCCAAAAATTCCATTTTTGACCCCAAA-TT
* *** *
20503694 TCCAAAAATTATCA-TTTT-ACCCTTGGATG
1 TCCAAAAATT-CCATTTTTGACCC-CAAATT
* ** *
20503723 TCCAAAAATACCATTTTTGATCCTGAATTT
1 TCCAAAAATTCCATTTTTGA-CCCCAAATT
* * **
20503753 TTCAAAAATTACCA-TTTT-ACCCCCAGACA
1 TCCAAAAATT-CCATTTTTGA-CCCCAAATT
*
20503782 TCCAAAAATTCCATTATTGACCCCAAAATT
1 TCCAAAAATTCCATTTTTGACCCC-AAATT
20503812 TCCAAA
1 TCCAAA
20503818 CAAAAATCGA
Statistics
Matches: 133, Mismatches: 36, Indels: 28
0.68 0.18 0.14
Matches are distributed among these distances:
28 10 0.08
29 57 0.43
30 57 0.43
31 9 0.07
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (29 bp):
TCCAAAAATTCCATTTTTGACCCCAAATT
Found at i:20503730 original size:118 final size:118
Alignment explanation
Indices: 20503581--20503817 Score: 323
Period size: 118 Copynumber: 2.0 Consensus size: 118
20503571 AAACTTTTAG
*
20503581 AAATTACCATTTTACCCTTGAATGTCCAAAAA-ATCTATTTTTGACCCCGAAACTTCCAAAAATT
1 AAATTACCATTTTACCCTTGAATGTCCAAAAATA-CCATTTTTGACCCCGAAACTTCCAAAAATT
** * * *
20503645 ACCATTGTACCCCAAGATGTCCAAAAATTCCATTTTTGACCTCAAATTTTCCAA
65 ACCATTGTACCCCAAGACATCCAAAAATTCCATTATTGACCCCAAAATTTCCAA
* * * * ** *
20503699 AAATTATCATTTTACCCTTGGATGTCCAAAAATACCATTTTTGATCCTGAATTTTTCAAAAATTA
1 AAATTACCATTTTACCCTTGAATGTCCAAAAATACCATTTTTGACCCCGAAACTTCCAAAAATTA
* *
20503764 CCATTTTACCCCCAGACATCCAAAAATTCCATTATTGACCCCAAAATTTCCAA
66 CCATTGTACCCCAAGACATCCAAAAATTCCATTATTGACCCCAAAATTTCCAA
20503817 A
1 A
20503818 CAAAAATCGA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 102 0.99
119 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (118 bp):
AAATTACCATTTTACCCTTGAATGTCCAAAAATACCATTTTTGACCCCGAAACTTCCAAAAATTA
CCATTGTACCCCAAGACATCCAAAAATTCCATTATTGACCCCAAAATTTCCAA
Found at i:20503786 original size:59 final size:59
Alignment explanation
Indices: 20503581--20503817 Score: 246
Period size: 59 Copynumber: 4.0 Consensus size: 59
20503571 AAACTTTTAG
** * * * *
20503581 AAATTACCATTTTA-CCCTTGAATGTCCAAAAAATCTATTTTTGACCCCGAAA-CTTCCAA
1 AAATTACCATTTTACCCCAAG-ATGTCCAAAAATTCCATTTTTGACCTC-AAATTTTCCAA
*
20503640 AAATTACCATTGTACCCCAAGATGTCCAAAAATTCCATTTTTGACCTCAAATTTTCCAA
1 AAATTACCATTTTACCCCAAGATGTCCAAAAATTCCATTTTTGACCTCAAATTTTCCAA
* *** * * *
20503699 AAATTATCATTTTACCCTTGGATGTCCAAAAATACCATTTTTGATCCT-GAATTTTTCAA
1 AAATTACCATTTTACCCCAAGATGTCCAAAAATTCCATTTTTGA-CCTCAAATTTTCCAA
* ** * * *
20503758 AAATTACCATTTTACCCCCAGACATCCAAAAATTCCATTATTGACCCCAAAATTTCCAA
1 AAATTACCATTTTACCCCAAGATGTCCAAAAATTCCATTTTTGACCTCAAATTTTCCAA
20503817 A
1 A
20503818 CAAAAATCGA
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
58 5 0.03
59 135 0.92
60 7 0.05
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (59 bp):
AAATTACCATTTTACCCCAAGATGTCCAAAAATTCCATTTTTGACCTCAAATTTTCCAA
Found at i:20507555 original size:15 final size:16
Alignment explanation
Indices: 20507535--20507574 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
20507525 AAAACCCAAT
20507535 AAAAAGTAAA-AAAA-G
1 AAAAAG-AAAGAAAAGG
20507550 AAAAAGAAAGAAAAGG
1 AAAAAGAAAGAAAAGG
20507566 AAAAA-AAAG
1 AAAAAGAAAG
20507575 TCAAGATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 3 0.13
15 14 0.61
16 6 0.26
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAGAAAAGG
Found at i:20508434 original size:17 final size:15
Alignment explanation
Indices: 20508413--20508501 Score: 90
Period size: 16 Copynumber: 5.7 Consensus size: 15
20508403 AAATAAATAA
*
20508413 AAAAAAGAAGAGAAAG
1 AAAAAAGAA-AAAAAG
20508429 AAAAAAGAAAAAAAAAG
1 AAAAAAG--AAAAAAAG
*
20508446 AAAAAAAAGAAAAAAG
1 AAAAAAGA-AAAAAAG
*
20508462 AAAAAAG-GAAAAAG
1 AAAAAAGAAAAAAAG
* *
20508476 AAAATAGAAAAAACG
1 AAAAAAGAAAAAAAG
20508491 AAAAAAGAAAA
1 AAAAAAGAAAA
20508502 GGAGAGGTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
14 12 0.20
15 16 0.26
16 20 0.33
17 11 0.18
18 2 0.03
ACGTcount: A:0.82, C:0.01, G:0.16, T:0.01
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:20508437 original size:7 final size:7
Alignment explanation
Indices: 20508413--20508501 Score: 110
Period size: 7 Copynumber: 12.6 Consensus size: 7
20508403 AAATAAATAA
20508413 AAAAAAG
1 AAAAAAG
20508420 AAGAGAAAG
1 AA-A-AAAG
20508429 AAAAAAG
1 AAAAAAG
20508436 AAAAAA-
1 AAAAAAG
*
20508442 AAAGAA-
1 AAAAAAG
20508448 AAAAAAG
1 AAAAAAG
20508455 AAAAAAG
1 AAAAAAG
20508462 AAAAAAG
1 AAAAAAG
*
20508469 GAAAAAG
1 AAAAAAG
*
20508476 AAAATAG
1 AAAAAAG
20508483 AAAAAACG
1 AAAAAA-G
20508491 AAAAAAG
1 AAAAAAG
20508498 AAAA
1 AAAA
20508502 GGAGAGGTCG
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
6 10 0.14
7 47 0.65
8 9 0.12
9 6 0.08
ACGTcount: A:0.82, C:0.01, G:0.16, T:0.01
Consensus pattern (7 bp):
AAAAAAG
Found at i:20508447 original size:26 final size:26
Alignment explanation
Indices: 20508411--20508496 Score: 111
Period size: 26 Copynumber: 3.2 Consensus size: 26
20508401 AAAAATAAAT
*
20508411 AAAAAAAAGAAGAGAAAGAAAAAAGA
1 AAAAAAAAGAAGAAAAAGAAAAAAGA
*
20508437 AAAAAAAAGAAAAAAAAGAAAAAAGA
1 AAAAAAAAGAAGAAAAAGAAAAAAGA
20508463 AAAAAGGAAA-AAGAAAATAGAAAAAACGA
1 AAAAA--AAAGAAGAAAA-AGAAAAAA-GA
20508492 AAAAA
1 AAAAA
20508497 GAAAAGGAGA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 29 0.55
27 6 0.11
28 11 0.21
29 7 0.13
ACGTcount: A:0.83, C:0.01, G:0.15, T:0.01
Consensus pattern (26 bp):
AAAAAAAAGAAGAAAAAGAAAAAAGA
Found at i:20508450 original size:35 final size:33
Alignment explanation
Indices: 20508398--20508501 Score: 136
Period size: 35 Copynumber: 3.0 Consensus size: 33
20508388 AGATGCAATG
*
20508398 AAGAAAAATAAATAAAAAAAAGAAGAGAAAGAAAA
1 AAGAAAAAAAAATAAAAAAAAGAA-A-AAAGAAAA
*
20508433 AAGAAAAAAAAAGAAAAAAAAGAAAAAAGAAAA
1 AAGAAAAAAAAATAAAAAAAAGAAAAAAGAAAA
*
20508466 AAGGAAAAAGAAAATAGAAAAAACGAAAAAAGAAAA
1 AA-GAAAAA-AAAATA-AAAAAAAGAAAAAAGAAAA
20508502 GGAGAGGTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
33 10 0.16
34 7 0.11
35 27 0.44
36 18 0.29
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (33 bp):
AAGAAAAAAAAATAAAAAAAAGAAAAAAGAAAA
Found at i:20509531 original size:49 final size:49
Alignment explanation
Indices: 20509455--20511569 Score: 1442
Period size: 49 Copynumber: 43.2 Consensus size: 49
20509445 TGAAAATTTG
* * * *
20509455 AAGGGAAAAATTTAAGCCGCAACGGCGAATCTAGTACCAAGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * **
20509504 AAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TATCTC-AG-AGACACG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTA-C-CAAGAAGACATA
* * * * *
20509553 AAGGGAAAGATTTAAGTCGTAACGGCGAATCCAGTACCACGAAGACACAA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACA-TA
* * *
20509603 AAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TACCTCAG-AGACATGA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACAT-A
* ** *
20509653 AA-GGAAAGATTTAAGTCGCAACGGCGAATCTAGTACCACTAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20509701 AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * ** *
20509750 AAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATTTG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * * *
20509799 AAGGGAAAGGTTTAAGTCGCAATGGCAAACCTTGTACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACC-AAGAAGACATA
* * * ** * * *
20509848 AAGGGAAATATTCAAGCCGCAACAGCGAATCCAGTACCATGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20509897 AAGGGAAAGGTTTAAGTCGTAATGGCGAACCTTA-TACCTTAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * * *
20509946 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * * *
20509995 AAGGGAAAGGTTTAAGTCACAATGGCAAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * *
20510044 AAGGGAAAGATTTAAGTCGCAACGGCGAATCCACTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * * * *
20510093 AAGCGAAAGGTTTAAGTCACAATGGCGAACCTTA-AACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
** * * * * *
20510142 AAGGGAAAGATTTAAACCGCAACGGTGAATCCAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * *
20510191 AAGGGAAAGATTTAAGTCGCAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * *
20510240 AAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * *
20510289 AAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTA-TACCTCAG-AGACATGA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACAT-A
* * * * * ** *
20510339 AA-GGAATGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATTTG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20510387 AAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTGTACCTTAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACC-AAGAAGACATA
* * * * * *
20510436 AAGGGAAAGATTCAAGCCGCAACGGCGAATCCAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * *
20510485 AAGGGAAAGGTTTAAGTCGTAATGGCGAACCTTA-TACCTCA-AAGACA-A
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * *
20510533 GAAGGGAAAGATTTAAGTCGCAACGGCGAATCTAGTACCACGAAAACACA
1 -AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20510583 AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * ** *
20510632 AAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACGAAGATTTG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * *
20510681 AAGGGAAAGATTTAAGTCGCAATGGCGAACCTTGTACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACC-AAGAAGACATA
* * * * * *
20510730 AAGGGAAAGATTCAAGCCGCAACGGCGAATCCAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * * * *
20510779 AAAGGAAAGGTTTAAGTCGTAATGGTGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * * *
20510828 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20510877 AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * *
20510926 AAGGGAAAGATTTAAGTCGCAATGGTGAATCCAGTACCACGAAGACA-C
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20510974 AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTA-TACCTCA-AAGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* ** * *
20511023 AAGGGAAAGATTTAAGCCGCAACAGCGAATCTAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * *
20511072 AAGGGAAAGATTTAAGTCGCAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * *
20511121 AAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20511170 AAGGGAAAGGTTTAAGTCGCAATGGCAAACCTTA-TACCTCA-AAGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * * ** *
20511219 AA-GGAATGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATTTG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * *
20511267 AAGGGAAATG-TTTAAGTCGCAATGGCGAACCTTGTACCTTAG-AGACATG
1 AAGGGAAA-GATTTAAGTCGCAATGGCGAATCTAGTACC-AAGAAGACATA
* * * * * * *
20511316 AAGGGAAAGATTCAAGCCGCAACGACGAATCCAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * ** * *
20511365 AAAGGAAAGGTTTAAGTCATAATGGCGAACCTTA-TACCTCA-AAGACA-A
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * ** * * * * *
20511413 GAAGGGAAAGATTTATGCCGCAGCGGTGAATCCAGTACCACGAAAACACA
1 -AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
* * * * *
20511463 AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTA-TACCTCAG-AGACATG
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATC-TAGTACC-AAGAAGACATA
* * * * *
20511512 AAGGGAAAGATTTAAGCCGCATTGGCGAATCCAGTACCACGAAGACACA
1 AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
20511561 AAGGGAAAG
1 AAGGGAAAG
20511570 GGAAGACACA
Statistics
Matches: 1551, Mismatches: 424, Indels: 182
0.72 0.20 0.08
Matches are distributed among these distances:
47 2 0.00
48 119 0.08
49 1344 0.87
50 83 0.05
51 3 0.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (49 bp):
AAGGGAAAGATTTAAGTCGCAATGGCGAATCTAGTACCAAGAAGACATA
Found at i:20509748 original size:98 final size:98
Alignment explanation
Indices: 20509453--20511570 Score: 3304
Period size: 98 Copynumber: 21.6 Consensus size: 98
20509443 CATGAAAATT
* * *
20509453 TGAAGGGAAAAATTTAAGCCGCAACGGCGAATCTAGTACCAAGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20509518 AGTCGCAATGGCGAACCTTATATCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20509551 CGAAGGGAAAGATTTAAGTCGTAACGGCGAATCCAGTACCACGAAGACACAAAAGGGAAAGGTTT
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACAC-AAAGGGAAAGGTTT
20509616 AAGTCGCAATGGCGAACCTTATACCTCAGAGACA
65 AAGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * * *
20509650 TGAAAGGAAAGATTTAAGTCGCAACGGCGAATCTAGTACCACTAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20509715 AGTCACAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* ****
20509748 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATTTGAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20509813 AGTCGCAATGGCAAACCTTGTACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * * *
20509846 TGAAGGGAAATATTCAAGCCGCAACAGCGAATCCAGTACCATGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20509911 AGTCGTAATGGCGAACCTTATACCTTAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
*
20509944 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510009 AGTCACAATGGCAAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20510042 TGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCACTACCACGAAGACACAAAGCGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510107 AGTCACAATGGCGAACCTTAAACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20510140 TGAAGGGAAAGATTTAAACCGCAACGGTGAATCCAGTACCACGAAGACACAAAGGGAAAGATTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
20510205 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
*
20510238 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
20510303 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * ****
20510336 TGAAAGGAATGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATTTGAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510401 AGTCGCAATGGCGAACCTTGTACCTTAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
*
20510434 TGAAGGGAAAGATTCAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510499 AGTCGTAATGGCGAACCTTATACCTCAAAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * * *
20510532 AGAAGGGAAAGATTTAAGTCGCAACGGCGAATCTAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20510597 AGTCACAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * **** *
20510630 TGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACGAAGATTTGAAGGGAAAGATTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20510695 AGTCGCAATGGCGAACCTTGTACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* *
20510728 TGAAGGGAAAGATTCAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAAGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510793 AGTCGTAATGGTGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
*
20510826 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20510891 AGTCACAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20510924 TGAAGGGAAAGATTTAAGTCGCAATGGTGAATCCAGTACCACGAAGACAC-AAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510988 AGTCACAATGGCGAACCTTATACCTCAAAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20511021 TGAAGGGAAAGATTTAAGCCGCAACAGCGAATCTAGTACCACGAAGACACAAAGGGAAAGATTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
20511086 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* *
20511119 TGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20511184 AGTCGCAATGGCAAACCTTATACCTCAAAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* **** *
20511217 TGAA-GGAATGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATTTGAAGGGAAATGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20511281 AGTCGCAATGGCGAACCTTGTACCTTAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * *
20511314 TGAAGGGAAAGATTCAAGCCGCAACGACGAATCCAGTACCACGAAGACACAAAAGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
** *
20511379 AGTCATAATGGCGAACCTTATACCTCAAAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
* * * * *
20511412 AGAAGGGAAAGATTTATGCCGCAGCGGTGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20511477 AGTCACAATGGCGAACCTTATACCTCAGAGACA
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACA
**
20511510 TGAAGGGAAAGATTTAAGCCGCATTGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGG
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGG
20511571 GAAGACACAA
Statistics
Matches: 1837, Mismatches: 180, Indels: 6
0.91 0.09 0.00
Matches are distributed among these distances:
97 176 0.10
98 1569 0.85
99 92 0.05
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (98 bp):
TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
AGTCGCAATGGCGAACCTTATACCTCAGAGACA
Found at i:20509923 original size:196 final size:196
Alignment explanation
Indices: 20509453--20511863 Score: 3604
Period size: 196 Copynumber: 12.2 Consensus size: 196
20509443 CATGAAAATT
* * *
20509453 TGAAGGGAAAAATTTAAGCCGCAACGGCGAATCTAGTACCAAGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* * * *
20509518 AGTCGCAATGGCGAACCTTATATCTCAGAGACACGAAGGGAAAGATTTAAGTCGTAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
20509583 CCAGTACCACGAAGACACAAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGA
131 CCAGTACCACGAAGACAC-AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGA
20509648 CA
195 CA
* * * *
20509650 TGAAAGGAAAGATTTAAGTCGCAACGGCGAATCTAGTACCACTAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20509715 AGTCACAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* **** * *
20509780 CTAGTACCACGAAGATTTGAAGGGAAAGGTTTAAGTCGCAATGGCAAACCTTGTACCTCAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20509845 A
196 A
* * * *
20509846 TGAAGGGAAATATTCAAGCCGCAACAGCGAATCCAGTACCATGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20509911 AGTCGTAATGGCGAACCTTATACCTTAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* * *
20509976 CCAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAATGGCAAACCTTATACCTCAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20510041 A
196 A
* * *
20510042 TGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCACTACCACGAAGACACAAAGCGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* * * *
20510107 AGTCACAATGGCGAACCTTAAACCTCAGAGACATGAAGGGAAAGATTTAAACCGCAACGGTGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
*
20510172 CCAGTACCACGAAGACACAAAGGGAAAGATTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20510237 A
196 A
*
20510238 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510303 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAAGGAATGATTTAAGCCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
**** * *
20510368 CCAGTACCACGAAGATTTGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTGTACCTTAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20510433 A
196 A
*
20510434 TGAAGGGAAAGATTCAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* * * *
20510499 AGTCGTAATGGCGAACCTTATACCTCAAAGACAAGAAGGGAAAGATTTAAGTCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* * *
20510564 CTAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20510629 A
196 A
* * **** *
20510630 TGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACGAAGATTTGAAGGGAAAGATTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* *
20510695 AGTCGCAATGGCGAACCTTGTACCTCAGAGACATGAAGGGAAAGATTCAAGCCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* * *
20510760 CCAGTACCACGAAGACACAAAAGGAAAGGTTTAAGTCGTAATGGTGAACCTTATACCTCAGAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20510825 A
196 A
*
20510826 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* * * *
20510891 AGTCACAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGTCGCAATGGTGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* *
20510956 CCAGTACCACGAAGACAC-AAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAAAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20511020 A
196 A
* * *
20511021 TGAAGGGAAAGATTTAAGCCGCAACAGCGAATCTAGTACCACGAAGACACAAAGGGAAAGATTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20511086 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGACGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* * *
20511151 CTAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCAAACCTTATACCTCAAAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20511216 A
196 A
* **** *
20511217 TGAA-GGAATGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGATTTGAAGGGAAATGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* * * *
20511281 AGTCGCAATGGCGAACCTTGTACCTTAGAGACATGAAGGGAAAGATTCAAGCCGCAACGACGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
* ** *
20511346 CCAGTACCACGAAGACACAAAAGGAAAGGTTTAAGTCATAATGGCGAACCTTATACCTCAAAGAC
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
20511411 A
196 A
* * * * *
20511412 AGAAGGGAAAGATTTATGCCGCAGCGGTGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
* **
20511477 AGTCACAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCATTGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
20511542 CCAGTACCACGAAGACACAAAGGGAAAGGGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCG
131 CCAGT---AC-----CAC-----------GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCG
*
20511607 AACCTTATGCCTCAGAGACA
177 AACCTTATACCTCAGAGACA
* * *
20511627 TGAAAGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAATGGGAAAGGTTTA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
*
20511692 AGTCGCAATGGCGAACCTTATACCTCAAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
66 AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
*
20511757 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGA-AG
131 CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGA-
20511821 CA
195 CA
* * * **
20511823 TGAAAGGAAAAATTTAAGCCGCAACGGTGAATTTAGTACCA
1 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
20511864 TGCGGATTGA
Statistics
Matches: 1995, Mismatches: 197, Indels: 45
0.89 0.09 0.02
Matches are distributed among these distances:
195 358 0.18
196 1319 0.66
197 134 0.07
199 2 0.00
204 3 0.00
207 3 0.00
212 2 0.00
215 174 0.09
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (196 bp):
TGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGTTTA
AGTCGCAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAAT
CCAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAGAC
A
Found at i:20511576 original size:19 final size:19
Alignment explanation
Indices: 20511552--20511589 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
20511542 CCAGTACCAC
20511552 GAAGACACAAAGGGAAAGG
1 GAAGACACAAAGGGAAAGG
20511571 GAAGACACAAAGGGAAAGG
1 GAAGACACAAAGGGAAAGG
20511590 TTTAAGTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.37, T:0.00
Consensus pattern (19 bp):
GAAGACACAAAGGGAAAGG
Found at i:20511664 original size:117 final size:117
Alignment explanation
Indices: 20511458--20511687 Score: 397
Period size: 117 Copynumber: 2.0 Consensus size: 117
20511448 TACCACGAAA
*
20511458 ACACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGAT
1 ACACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAGAGACATGAAAGGAAAGAT
***
20511523 TTAAGCCGCATTGGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGGAAG
66 TTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGGAAG
* *
20511575 ACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATGCCTCAGAGACATGAAAGGAAAGAT
1 ACACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAGAGACATGAAAGGAAAGAT
*
20511640 TTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAATGGGAAAGG
66 TTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAAAGGGAAAGG
20511688 TTTAAGTCGC
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 106 1.00
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (117 bp):
ACACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAGAGACATGAAAGGAAAGAT
TTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAAAGGGAAAGGGAAG
Found at i:20511727 original size:215 final size:215
Alignment explanation
Indices: 20511356--20511785 Score: 707
Period size: 215 Copynumber: 2.0 Consensus size: 215
20511346 CCAGTACCAC
* *
20511356 GAAGACACAAAAGGAAAGGTTTAAGTCATAATGGCGAACCTTATACCTCAAAGACAAGAAGGGAA
1 GAAGACACAAAAGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAAAGACAAGAAAGGAA
* * * *
20511421 AGATTTATGCCGCAGCGGTGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAAT
66 AGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAAT
* **
20511486 GGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATTTAAGCCGCATTGGCGAATCCAGTACCA
131 GGCGAACCTTATACCTCAAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
20511551 CGAAGACACAAAGGGAAAGG
196 CGAAGACACAAAGGGAAAGG
* * * * *
20511571 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATGCCTCAGAGACATGAAAGGAA
1 GAAGACACAAAAGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAAAGACAAGAAAGGAA
* * *
20511636 AGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGACACAATGGGAAAGGTTTAAGTCGCAAT
66 AGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAAT
20511701 GGCGAACCTTATACCTCAAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
131 GGCGAACCTTATACCTCAAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
20511766 CGAAGACACAAAGGGAAAGG
196 CGAAGACACAAAGGGAAAGG
20511786 TTTAAGTCGC
Statistics
Matches: 198, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
215 198 1.00
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.15
Consensus pattern (215 bp):
GAAGACACAAAAGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCAAAGACAAGAAAGGAA
AGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAAACACAAAGGGAAAGGTTTAAGTCACAAT
GGCGAACCTTATACCTCAAAGACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
CGAAGACACAAAGGGAAAGG
Found at i:20511848 original size:98 final size:99
Alignment explanation
Indices: 20511571--20511863 Score: 484
Period size: 98 Copynumber: 3.0 Consensus size: 99
20511561 AAGGGAAAGG
*
20511571 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATGCCTCAG-AGACATGAAAGGA
1 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGACATGAAAGGA
*
20511635 AAGATTTAAGCCGCAACAGCGAATCCAGTACCAC
66 AAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
* *
20511669 GAAGACACAATGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA-AAGACATGAAGGGA
1 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGACATGAAAGGA
20511733 AAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
66 AAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
*
20511767 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGAAG-CATGAAAGGA
1 GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGACATGAAAGGA
* * **
20511831 AAAATTTAAGCCGCAACGGTGAATTTAGTACCA
66 AAGATTTAAGCCGCAACGGCGAATCCAGTACCA
20511864 TGCGGATTGA
Statistics
Matches: 182, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 179 0.98
99 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (99 bp):
GAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGACATGAAAGGA
AAGATTTAAGCCGCAACGGCGAATCCAGTACCAC
Found at i:20511853 original size:49 final size:50
Alignment explanation
Indices: 20511583--20511849 Score: 232
Period size: 49 Copynumber: 5.4 Consensus size: 50
20511573 AGACACAAAG
* * * *
20511583 GGAAAGGTTTAAGTCGCAATGGCGAACCTTATGCCTCAG-AGACATGAAA
1 GGAAAGATTTAAGCCGCAACGGCGAACCTTATACCTCAGAAGACATGAAA
* * * *
20511632 GGAAAGATTTAAGCCGCAACAGCGAATCC--AGTACCAC-GAAGACA-CAATG
1 GGAAAGATTTAAGCCGCAACGGCGAA-CCTTA-TACCTCAGAAGACATGAA-A
* * * *
20511681 GGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA-AAGACATGAAG
1 GGAAAGATTTAAGCCGCAACGGCGAACCTTATACCTCAGAAGACATGAAA
* *
20511730 GGAAAGATTTAAGCCGCAACGGCGAATCC--AGTACCAC-GAAGACA-CAAA
1 GGAAAGATTTAAGCCGCAACGGCGAA-CCTTA-TACCTCAGAAGACATGAAA
* * * *
20511778 GGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGAAG-CATGAAA
1 -GGAAAGATTTAAGCCGCAACGGCGAACCTTATACCTCAGAAGACATGAAA
*
20511828 GGAAAAATTTAAGCCGCAACGG
1 GGAAAGATTTAAGCCGCAACGG
20511850 TGAATTTAGT
Statistics
Matches: 172, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
48 11 0.06
49 146 0.85
50 15 0.09
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (50 bp):
GGAAAGATTTAAGCCGCAACGGCGAACCTTATACCTCAGAAGACATGAAA
Found at i:20512139 original size:39 final size:39
Alignment explanation
Indices: 20512085--20512352 Score: 250
Period size: 39 Copynumber: 6.9 Consensus size: 39
20512075 AGATCACCAT
* *
20512085 CAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAAC
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
* ** * * * *
20512124 CATCTGATTTTTTACCCCGAGCTTGGGGCAGATCACCAT
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
* * *
20512163 CAGCCAATCTATTT-TCCCGAGCTTGGGGCAGATTGCAGC
1 CAGCCAATCT-TTTACCCCGAGCTTGGGGCAGATTACAAC
* * * * * *
20512202 CATCCGATCTTTTACCCCAAGTTTGGGGCAGATCACAAT
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
* * *
20512241 TAGCCAATCTCTTACCCCGAGCTTGGGGCAGATTACAGC
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
** * * * *
20512280 CATTCGATCTTTTACCCCGAGCATGGGGCAGATCACAAT
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
* * *
20512319 CAGCCAATCTCTTACCCCGAGCCTAGGGCAGATT
1 CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATT
20512353 GCAGTTATCT
Statistics
Matches: 174, Mismatches: 53, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
38 3 0.02
39 168 0.97
40 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CAGCCAATCTTTTACCCCGAGCTTGGGGCAGATTACAAC
Found at i:20512205 original size:78 final size:78
Alignment explanation
Indices: 20512074--20512352 Score: 398
Period size: 78 Copynumber: 3.6 Consensus size: 78
20512064 TCCAGAAGGA
* * *
20512074 CAGATCACCATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAACCATCTGATTTTTTAC
1 CAGATCACAATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAGCCATCTGATCTTTTAC
20512139 CCCGAGCTTGGGG
66 CCCGAGCTTGGGG
* * ** * * *
20512152 CAGATCACCATCAGCCAATCTATTTTCCCGAGCTTGGGGCAGATTGCAGCCATCCGATCTTTTAC
1 CAGATCACAATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAGCCATCTGATCTTTTAC
* *
20512217 CCCAAGTTTGGGG
66 CCCGAGCTTGGGG
* *
20512230 CAGATCACAATTAGCCAATCTCTTACCCCGAGCTTGGGGCAGATTACAGCCAT-TCGATCTTTTA
1 CAGATCACAATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAGCCATCT-GATCTTTTA
*
20512294 CCCCGAGCATGGGG
65 CCCCGAGCTTGGGG
*
20512308 CAGATCACAATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATT
1 CAGATCACAATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATT
20512353 GCAGTTATCT
Statistics
Matches: 177, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 177 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (78 bp):
CAGATCACAATCAGCCAATCTCTTACCCCGAGCTTAGGGCAGATTACAGCCATCTGATCTTTTAC
CCCGAGCTTGGGG
Found at i:20514811 original size:30 final size:31
Alignment explanation
Indices: 20514775--20514863 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 31
20514765 CTGAACTATC
20514775 CAAAAATCATATTTTAACCCCCAAA-TTCTT
1 CAAAAATCATATTTTAACCCCCAAACTTCTT
* * **
20514805 CAAAAATTACATTTTAACCCTTAAACTT-TT
1 CAAAAATCATATTTTAACCCCCAAACTTCTT
* *
20514835 CAAAAATCAT-TTTTGACCCCGAAACTTCT
1 CAAAAATCATATTTTAACCCCCAAACTTCT
20514864 AAAAATTACC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
29 14 0.29
30 32 0.67
31 2 0.04
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.35
Consensus pattern (31 bp):
CAAAAATCATATTTTAACCCCCAAACTTCTT
Found at i:20514887 original size:30 final size:29
Alignment explanation
Indices: 20514851--20515064 Score: 111
Period size: 30 Copynumber: 7.2 Consensus size: 29
20514841 TCATTTTTGA
20514851 CCCCGAAACTTCTAAAAATTACCATTTTAC
1 CCCCGAAA-TTCTAAAAATTACCATTTTAC
*
20514881 CCCCGAATATCCT-AAAATT-CCATTTTTGA-
1 CCCCGAA-ATTCTAAAAATTACCA-TTTT-AC
** *
20514910 CCTTGAAACTTCTGAAAATTACCATTTTTA-
1 CCCCGAAA-TTCTAAAAATTACCA-TTTTAC
** * *
20514940 CCCTTAAATGTCCAAAAATT-CCATTTTAA
1 CCCCGAAAT-TCTAAAAATTACCATTTTAC
*
20514969 CCCCAAAACTT-TCAAAAATTACCATTTTAC
1 CCCCGAAA-TTCT-AAAAATTACCATTTTAC
* * *
20514999 CCCC-AAATGTCCAAAAA-TACCGTTTTTAA
1 CCCCGAAAT-TCTAAAAATTACC-ATTTTAC
* * * *
20515028 CCTCGAATTTTCCAAAAATTATCATTTTAC
1 CCCCGAA-ATTCTAAAAATTACCATTTTAC
*
20515058 CCTCGAA
1 CCCCGAA
20515065 TATCCAACAA
Statistics
Matches: 147, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
28 14 0.10
29 53 0.36
30 67 0.46
31 13 0.09
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.33
Consensus pattern (29 bp):
CCCCGAAATTCTAAAAATTACCATTTTAC
Found at i:20514905 original size:59 final size:59
Alignment explanation
Indices: 20514835--20515093 Score: 256
Period size: 59 Copynumber: 4.4 Consensus size: 59
20514825 TTAAACTTTT
* *
20514835 CAAAAAT--CATTTTTGACCCCGAAACTTCTAAAAATTACCATTTTACCCCCGAATATC
1 CAAAAATACCATTTTTGACCTCGAAACTTCTAAAAATTACCATTTTACCCCCAAATATC
* * * * ** *
20514892 CTAAAATTCCATTTTTGACCTTGAAACTTCTGAAAATTACCATTTTTACCCTTAAATGTC
1 CAAAAATACCATTTTTGACCTCGAAACTTCTAAAAATTACCA-TTTTACCCCCAAATATC
* * * * *
20514952 CAAAAATTCCA-TTTTAACCCCAAAACTT-TCAAAAATTACCATTTTACCCCCAAATGTC
1 CAAAAATACCATTTTTGACCTCGAAACTTCT-AAAAATTACCATTTTACCCCCAAATATC
* * ** * * * *
20515010 CAAAAATACCGTTTTTAACCTCGAATTTTCCAAAAATTATCATTTTACCCTCGAATATC
1 CAAAAATACCATTTTTGACCTCGAAACTTCTAAAAATTACCATTTTACCCCCAAATATC
* *
20515069 CAACAATACCATGTTTGACCTCGAA
1 CAAAAATACCATTTTTGACCTCGAA
20515094 GGTCCAAAAA
Statistics
Matches: 165, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
57 6 0.04
58 25 0.15
59 111 0.67
60 23 0.14
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (59 bp):
CAAAAATACCATTTTTGACCTCGAAACTTCTAAAAATTACCATTTTACCCCCAAATATC
Found at i:20515046 original size:118 final size:117
Alignment explanation
Indices: 20514771--20515060 Score: 297
Period size: 118 Copynumber: 2.5 Consensus size: 117
20514761 GTCCCTGAAC
* * * *
20514771 TATCCAAAAAT--CATATTTTAACCCCCAAA-TTCTTCAAAAATTACATTTTAACCCTTAAACTT
1 TATCCAAAAATACCAT-TTTTAACCTCGAAACTTC--CAAAAATTACATTTTTACCCTTAAACTG
* * * *
20514833 TTCAAAAATCATTTTTGACCCCGAAACTTCTAAAAATTACCATTTTACCCCCGAA
63 TCCAAAAATCATTTTTAACCCCAAAACTTCTAAAAATTACCATTTTACCCCCAAA
* * * * **
20514888 TATCCTAAAATTCCATTTTTGACCTTGAAACTTCTGAAAATTACCATTTTTACCCTTAAA-TGTC
1 TATCCAAAAATACCATTTTTAACCTCGAAACTTCCAAAAATTA-CATTTTTACCCTTAAACTGTC
20514952 CAAAAATTCCA-TTTTAACCCCAAAACTT-TCAAAAATTACCATTTTACCCCCAAA
65 CAAAAA-T-CATTTTTAACCCCAAAACTTCT-AAAAATTACCATTTTACCCCCAAA
* * **
20515006 TGTCCAAAAATACCGTTTTTAACCTCGAATTTTCCAAAAATTATCA-TTTTACCCT
1 TATCCAAAAATACCATTTTTAACCTCGAAACTTCCAAAAATTA-CATTTTTACCCT
20515061 CGAATATCCA
Statistics
Matches: 142, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
117 35 0.25
118 99 0.70
119 8 0.06
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.35
Consensus pattern (117 bp):
TATCCAAAAATACCATTTTTAACCTCGAAACTTCCAAAAATTACATTTTTACCCTTAAACTGTCC
AAAAATCATTTTTAACCCCAAAACTTCTAAAAATTACCATTTTACCCCCAAA
Found at i:20515071 original size:29 final size:29
Alignment explanation
Indices: 20514864--20515146 Score: 149
Period size: 29 Copynumber: 9.7 Consensus size: 29
20514854 CGAAACTTCT
* *
20514864 AAAAATTACCATTTTACCCCCGAATATCC
1 AAAAATTACCATTTTACCCTCGAATGTCC
* * *
20514893 TAAAATT-CCATTTTTGA-CCTTGAAACT-TCT
1 AAAAATTACCA-TTTT-ACCCTCG-AA-TGTCC
* **
20514923 GAAAATTACCATTTTTACCCTTAAATGTCC
1 AAAAATTACCA-TTTTACCCTCGAATGTCC
* *
20514953 AAAAATT-CCATTTTAACCC-CAAAACT-TTC
1 AAAAATTACCATTTT-ACCCTC-GAA-TGTCC
* *
20514982 AAAAATTACCATTTTACCCCCAAATGTCC
1 AAAAATTACCATTTTACCCTCGAATGTCC
* * *
20515011 AAAAA-TACCGTTTTTAACCTCGAATTTTCC
1 AAAAATTACC-ATTTTACCCTCGAA-TGTCC
* *
20515041 AAAAATTATCATTTTACCCTCGAATATCC
1 AAAAATTACCATTTTACCCTCGAATGTCC
* *
20515070 AACAA-TACCATGTTTGA-CCTCGAAGGTCC
1 AAAAATTACCAT-TTT-ACCCTCGAATGTCC
*
20515099 AAAAATT-CCATTTTTGA-CCTCGAAATTTCC
1 AAAAATTACCA-TTTT-ACCCTCG-AATGTCC
* *
20515129 -AAAATTACTAATTTACCC
1 AAAAATTACCATTTTACCC
20515147 AAAAGTGTCC
Statistics
Matches: 202, Mismatches: 29, Indels: 46
0.73 0.10 0.17
Matches are distributed among these distances:
28 18 0.09
29 106 0.52
30 62 0.31
31 16 0.08
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (29 bp):
AAAAATTACCATTTTACCCTCGAATGTCC
Found at i:20515130 original size:59 final size:59
Alignment explanation
Indices: 20514864--20515132 Score: 163
Period size: 59 Copynumber: 4.6 Consensus size: 59
20514854 CGAAACTTCT
* * * * * * *** *
20514864 AAAAATTACCATTTTACCCCCG-AATATCCTAAAATTCCATTTTTGACCTTGAAACTTCT
1 AAAAATTACCATTTTA-CCTCGAAATATCCAAAAATACCATGTTTAACCTCGAATGGTCC
* * * * * * *** *
20514923 GAAAATTACCATTTTTACC-CTTAAATGTCCAAAAATTCCAT-TTTAACCCCAAAACTTTC
1 AAAAATTACCA-TTTTACCTC-GAAATATCCAAAAATACCATGTTTAACCTCGAATGGTCC
* * * * * **
20514982 AAAAATTACCATTTTACCCCCAAATGTCCAAAAATACCGTTTTTAACCTCGAATTTTCC
1 AAAAATTACCATTTTACCTCGAAATATCCAAAAATACCATGTTTAACCTCGAATGGTCC
* * *
20515041 AAAAATTATCATTTTACCCTCG-AATATCCAACAATACCATGTTTGACCTCGAA-GGTCC
1 AAAAATTACCATTTTA-CCTCGAAATATCCAAAAATACCATGTTTAACCTCGAATGGTCC
*
20515099 AAAAATT-CCATTTTTGACCTCGAAATTTCCAAAA
1 AAAAATTACCA-TTTT-ACCTCGAAATATCCAAAA
20515133 TTACTAATTT
Statistics
Matches: 169, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
57 2 0.01
58 44 0.26
59 99 0.59
60 24 0.14
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (59 bp):
AAAAATTACCATTTTACCTCGAAATATCCAAAAATACCATGTTTAACCTCGAATGGTCC
Found at i:20518450 original size:6 final size:6
Alignment explanation
Indices: 20518441--20518466 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20518431 CATTTTAATC
20518441 TTTGTT TTTGTT TTTGTT TTTGTT TT
1 TTTGTT TTTGTT TTTGTT TTTGTT TT
20518467 CTTTTACCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTGTT
Found at i:20535327 original size:10 final size:10
Alignment explanation
Indices: 20535312--20535336 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
20535302 CCGTTTTAAG
20535312 TTTATAATAT
1 TTTATAATAT
20535322 TTTATAATAT
1 TTTATAATAT
20535332 TTTAT
1 TTTAT
20535337 TTATATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTATAATAT
Found at i:20540636 original size:6 final size:5
Alignment explanation
Indices: 20540589--20540618 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
20540579 AAAAATTCCC
20540589 AAAAG AAAAG AAAAG AAAAG AAAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAA
20540619 TTGGAAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:20541091 original size:27 final size:27
Alignment explanation
Indices: 20541061--20541117 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
20541051 AATATTTATA
*
20541061 TATTTTATACATTTA-TAATTTAATTTT
1 TATTTTAT-CATTTAGAAATTTAATTTT
**
20541088 TATTTTATTTTTTAGAAATTTAATTTT
1 TATTTTATCATTTAGAAATTTAATTTT
20541115 TAT
1 TAT
20541118 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TATTTTATCATTTAGAAATTTAATTTT
Found at i:20545481 original size:18 final size:19
Alignment explanation
Indices: 20545458--20545493 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
20545448 TAAAATCGAG
20545458 TAATTAACCAAA-TTAATC
1 TAATTAACCAAACTTAATC
20545476 TAATTAACCAAACTTAAT
1 TAATTAACCAAACTTAAT
20545494 AGTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATTAACCAAACTTAATC
Found at i:20550683 original size:51 final size:51
Alignment explanation
Indices: 20550623--20550720 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 51
20550613 TCACTCACGA
*
20550623 CTTTCAAAAGAATGGTGATATAAATGCTTAACAAATACATTCAAATAGTCT
1 CTTTCAAAAGAATGGTAATATAAATGCTTAACAAATACATTCAAATAGTCT
20550674 CTTTCAAAAGAATGGTAATATAAATGCTTAACAAATACATTCAAATA
1 CTTTCAAAAGAATGGTAATATAAATGCTTAACAAATACATTCAAATA
20550721 ATCATTGAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (51 bp):
CTTTCAAAAGAATGGTAATATAAATGCTTAACAAATACATTCAAATAGTCT
Found at i:20552465 original size:25 final size:25
Alignment explanation
Indices: 20552419--20552470 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
20552409 TATTTAATAA
* *
20552419 ATATATTTGTTTTTATAAATTTGTT
1 ATATATTTATTTTTATAAATTTATT
*
20552444 ATATATTTATTTATT-TATATTTATT
1 ATATATTTATTT-TTATAAATTTATT
20552469 AT
1 AT
20552471 TTATAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (25 bp):
ATATATTTATTTTTATAAATTTATT
Found at i:20552472 original size:13 final size:14
Alignment explanation
Indices: 20552445--20552475 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
20552435 AAATTTGTTA
20552445 TATATTTATTTATT
1 TATATTTATTTATT
20552459 TATATTTA-TTATT
1 TATATTTATTTATT
20552472 TATA
1 TATA
20552476 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATATTTATTTATT
Done.