Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 75 of 120
Found at i:21951258 original size:30 final size:29
Alignment explanation
Indices: 21951184--21951495 Score: 227
Period size: 30 Copynumber: 10.5 Consensus size: 29
21951174 AAATCGGGGT
* * * *
21951184 TAAAAATGGAATTTAGGGAAGTTTGAGGG
1 TAAAAATGTAATTTTGGAAAGTTTTAGGG
* * **
21951213 T-GAAATGGTAATTTTTGAAAGTTTCGGGG
1 TAAAAAT-GTAATTTTGGAAAGTTTTAGGG
* *
21951242 TAAAAATGCTATTTTTTGAAA-TTTTAGGG
1 TAAAAATG-TAATTTTGGAAAGTTTTAGGG
* * *
21951271 TCAAAATATGATTTTGGAAAAGTTTTAGGG
1 TAAAAATGTAATTTTGG-AAAGTTTTAGGG
* *
21951301 TTAAAATGTAATTTTGGAAAAGTTTTGGGG
1 TAAAAATGTAATTTTGG-AAAGTTTTAGGG
* *
21951331 TCAAAATGTAATTTTTAGAAAGTTTT-GAGG
1 TAAAAATGTAA-TTTTGGAAAGTTTTAG-GG
* *
21951361 TCAAAATATAATTTTGGAAAAGTTTTAGGG
1 TAAAAATGTAATTTTGG-AAAGTTTTAGGG
* *
21951391 TCAAAATGTAATTTTCAGAAAGTTTT-GGG
1 TAAAAATGTAATTTT-GGAAAGTTTTAGGG
* * *
21951420 TTCAAAATATAATTTTGGAAAAGTTTTGGGG
1 -TAAAAATGTAATTTTGG-AAAGTTTTAGGG
* ** *
21951451 TCAAAATGTAATTTCCAGAAATTTTTAGGG
1 TAAAAATGTAATTT-TGGAAAGTTTTAGGG
* *
21951481 TCAAAATATAATTTT
1 TAAAAATGTAATTTT
21951496 TGGACAATTT
Statistics
Matches: 234, Mismatches: 35, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
28 10 0.04
29 44 0.19
30 169 0.72
31 11 0.05
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (29 bp):
TAAAAATGTAATTTTGGAAAGTTTTAGGG
Found at i:21951345 original size:60 final size:59
Alignment explanation
Indices: 21951263--21951495 Score: 324
Period size: 60 Copynumber: 3.9 Consensus size: 59
21951253 TTTTTTGAAA
* * * * *
21951263 TTTTAGGGTCAAAATATGATTTT-GGAAAAGTTTTAGGGTTAAAATGTAATTTTGGAAAAG
1 TTTTAGGGTCAAAATGTAATTTTCAG-AAAGTTTT-GGGTCAAAATATAATTTTGGAAAAG
* *
21951323 TTTTGGGGTCAAAATGTAATTTTTAGAAAGTTTTGAGGTCAAAATATAATTTTGGAAAAG
1 TTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTTG-GGTCAAAATATAATTTTGGAAAAG
21951383 TTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTTGGGTTCAAAATATAATTTTGGAAAAG
1 TTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTTGGG-TCAAAATATAATTTTGGAAAAG
* * *
21951443 TTTTGGGGTCAAAATGTAATTTCCAGAAATTTTTAGGGTCAAAATATAATTTT
1 TTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTT-GGGTCAAAATATAATTTT
21951496 TGGACAATTT
Statistics
Matches: 158, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
59 3 0.02
60 151 0.96
61 4 0.03
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (59 bp):
TTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTTGGGTCAAAATATAATTTTGGAAAAG
Found at i:21951388 original size:90 final size:89
Alignment explanation
Indices: 21951202--21951495 Score: 314
Period size: 90 Copynumber: 3.3 Consensus size: 89
21951192 GAATTTAGGG
* * * * *
21951202 AAGTTTGAGGGT-GAAATGGTAATTTTTG-AAAGTTTCGGGGTAAAAATGCT-ATTTTTTGAAA-
1 AAGTTTTAGGGTCAAAAT-GTAA-TTTTGAAAAGTTTTGGGGTCAAAATG-TAATTTTTAGAAAG
*
21951263 TTTT-AGGGTCAAAATATGATTTTGGAA
63 TTTTGA-GGTCAAAATATAATTTTGGAA
*
21951290 AAGTTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTTAGAAAGTT
1 AAGTTTTAGGGTCAAAATGTAATTTT-GAAAAGTTTTGGGGTCAAAATGTAATTTTTAGAAAGTT
21951355 TTGAGGTCAAAATATAATTTTGGAA
65 TTGAGGTCAAAATATAATTTTGGAA
* * * *
21951380 AAGTTTTAGGGTCAAAATGTAATTTTCAGAAAGTTTTGGGTTCAAAATATAA-TTTTGGAAAAGT
1 AAGTTTTAGGGTCAAAATGTAATTTTGA-AAAGTTTTGGGGTCAAAATGTAATTTTTAG-AAAGT
* * **
21951444 TTTGGGGTCAAAATGTAA-TTTCCAGA
64 TTTGAGGTCAAAATATAATTTTGGA-A
* *
21951470 AATTTTTAGGGTCAAAATATAATTTT
1 AAGTTTTAGGGTCAAAATGTAATTTT
21951496 TGGACAATTT
Statistics
Matches: 180, Mismatches: 17, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
87 4 0.02
88 17 0.09
89 42 0.23
90 116 0.64
91 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (89 bp):
AAGTTTTAGGGTCAAAATGTAATTTTGAAAAGTTTTGGGGTCAAAATGTAATTTTTAGAAAGTTT
TGAGGTCAAAATATAATTTTGGAA
Found at i:21953429 original size:6 final size:6
Alignment explanation
Indices: 21953412--21953490 Score: 74
Period size: 6 Copynumber: 13.5 Consensus size: 6
21953402 TTTGGACTTT
* * * * * *
21953412 AATTTA AA-TTA ATTTTA AATTTA AA-ATA AATTTA GACTCA AATTCA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
21953458 AATTTA AAGTTT- AATTTA AATTTA AATTTA AAT
1 AATTTA AA-TTTA AATTTA AATTTA AATTTA AAT
21953491 AAATCTAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 11 0.19
6 45 0.76
7 3 0.05
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:21953499 original size:16 final size:16
Alignment explanation
Indices: 21953412--21953529 Score: 83
Period size: 17 Copynumber: 6.9 Consensus size: 16
21953402 TTTGGACTTT
*
21953412 AATTTAAATTAATTTTA
1 AATTTAAA-TAAATTTA
21953429 AATTTAAAATAAATTTA
1 AATTT-AAATAAATTTA
* * *
21953446 GACTCAAATTCAAATTTA
1 AATTTAAA-T-AAATTTA
*
21953464 AAGTTTAATTTAAATTTA
1 AA-TTTAA-ATAAATTTA
*
21953482 AATTTAAATAAATCTA
1 AATTTAAATAAATTTA
* *
21953498 AATTCATATCAAATTTA
1 AATTTAAAT-AAATTTA
*
21953515 ATTTTAAAATAAATT
1 AATTT-AAATAAATT
21953530 AAAAAAAAAG
Statistics
Matches: 78, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
16 17 0.22
17 34 0.44
18 23 0.29
19 4 0.05
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (16 bp):
AATTTAAATAAATTTA
Found at i:21953961 original size:91 final size:91
Alignment explanation
Indices: 21953833--21954000 Score: 282
Period size: 91 Copynumber: 1.8 Consensus size: 91
21953823 GTTGGTGTTT
* * *
21953833 CATCTTACTTTTACTTCAATTTCAGAGGGACAAAGGCTTGATATCCAGCTCTACTTCAATTTGAA
1 CATCTTACTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAA
21953898 GAGGATAGGAAAAGATGTCGGTGCTC
66 GAGGATAGGAAAAGATGTCGGTGCTC
* * *
21953924 CATCTTGCTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCTATCTCTACTTCAATTTCAA
1 CATCTTACTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAA
21953989 GAGGATAGGAAA
66 GAGGATAGGAAA
21954001 TGATCTTGCT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 71 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (91 bp):
CATCTTACTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAA
GAGGATAGGAAAAGATGTCGGTGCTC
Found at i:21954055 original size:38 final size:37
Alignment explanation
Indices: 21954013--21954717 Score: 370
Period size: 38 Copynumber: 19.4 Consensus size: 37
21954003 ATCTTGCTCT
*
21954013 TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCC-ACTC
* * * * *
21954051 TACTTCAATTTCAAGAGGAT-AGGAAATGATTTTGCTCT-
1 TACTTCAATTTC-AGA-GATGAAGACATG-TTATCCACTC
*
21954089 TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCC-ACTC
* * * * *
21954127 TACTTCAATTTCAAGAGGAT-AGGAAATGATTTTGCTCT-
1 TACTTCAATTTC-AGA-GATGAAGACATG-TTATCCACTC
* *
21954165 TACTTCAATTTCAGAGGTAAAGACATGTTATCCACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
* * * *
21954202 TACTTCAATTTCA-AGAGGATGAC--G-T-TGCTCT-
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
*
21954233 TACTTCAATTTCAGAGATAAAGACATGTTATCCAACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCC-ACTC
* * * * *
21954271 TACTTCAATTTCAAGAGGAT-AGGAAATGATTTTGCTCT-
1 TACTTCAATTTC-AGA-GATGAAGACATG-TTATCCACTC
* *
21954309 TACTTCAATTTCAGAGGTAAAGACATGTTATCCACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
* * * *
21954346 TACTTCAATTTCA-AGAGGATGAC--G-T-TGCTCT-
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
*
21954377 TACTTCAATTTCAGAGATAAAGACATGTTATCCAACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCC-ACTC
* ** * *
21954415 TACTTCAATTTCA-AGAGGGTGAC--G-T-TGCTCT-
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
*
21954446 TACTTCAATTTCAGAGATGAAGACGTGTTATCCACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
* * * * *
21954483 TACTTCAATTTCAAGCGGAT-AGGAAAAG--ATCTCGCTCC
1 TACTTCAATTTC-AG-AGATGAAGACATGTTATC-CACT-C
* * *
21954521 TACTTCAATTTCAGAGGTAAAGACGTG-T-TCCACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
* * * **
21954556 TACTTCAATTTCA-AGAGGACAGGAAAAG--ATCTTGCTCC
1 TACTTCAATTTCAGAGATGA-A-GACATGTTATC-CACT-C
* * * *
21954594 TACTTCAGTTTTAGAGATAAAGACGTG-T-TCCACTC
1 TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
* * **
21954629 TACTTCAATTTCAAGAGGAT-ATGGCATG--ATCTTGCTC
1 TACTTCAATTTC-AGA-GATGAAGACATGTTATC-CACTC
*
21954666 TTACTTCAATTTCAGAGATAAAGAC-TCGTTATCCAACTC
1 -TACTTCAATTTCAGAGATGAAGACAT-GTTATCC-ACTC
21954705 TACTTCAATTTCA
1 TACTTCAATTTCA
21954718 AGGGGATATG
Statistics
Matches: 499, Mismatches: 109, Indels: 118
0.69 0.15 0.16
Matches are distributed among these distances:
31 39 0.08
32 31 0.06
33 4 0.01
34 9 0.02
35 30 0.06
36 72 0.14
37 107 0.21
38 142 0.28
39 44 0.09
40 21 0.04
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (37 bp):
TACTTCAATTTCAGAGATGAAGACATGTTATCCACTC
Found at i:21954070 original size:76 final size:76
Alignment explanation
Indices: 21953925--21954817 Score: 1096
Period size: 76 Copynumber: 12.1 Consensus size: 76
21953915 TCGGTGCTCC
* * * * * *
21953925 ATCTTGCTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCTATCTCTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG
21953990 AGGATAGGAAATG
64 AGGATAGGAAATG
*
21954003 ATCTTGCTCTTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
21954068 GATAGGAAATG
66 GATAGGAAATG
* *
21954079 ATTTTGCTCTTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
21954144 GATAGGAAATG
66 GATAGGAAATG
* * *
21954155 ATTTTGCTCTTACTTCAATTTCAGAGGTAAAGACATGTTATCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
21954219 GAT--G--ACG
66 GATAGGAAATG
*
21954226 ---TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
21954288 GATAGGAAATG
66 GATAGGAAATG
* * *
21954299 ATTTTGCTCTTACTTCAATTTCAGAGGTAAAGACATGTTATCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
21954363 GAT--G--ACG
66 GATAGGAAATG
*
21954370 ---TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGA-
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
21954431 G---GG---TG
66 GATAGGAAATG
* * *
21954436 A-CGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGC
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
*
21954499 GGATAGGAAAAG
65 GGATAGGAAATG
* * * *
21954511 ATCTCGCTCCTACTTCAATTTCAGAGGTAAAGACGTG-T-TCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
* *
21954573 GACAGGAAAAG
66 GATAGGAAATG
* * * *
21954584 ATCTTGCTCCTACTTCAGTTTTAGAGATAAAGACGTG-T-TCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
21954646 GATATGG-CATG
66 GATA-GGAAATG
* *
21954657 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTCGTTATCCAACTCTACTTCAATTTCAAGGG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
21954722 GATATGAGAA-G
66 GATAGGA-AATG
* * * * * *
21954733 ATCTAGCTCTTACTTCAATTTCAGAGAGATAAGACTTGATATCCAGCTTTACTTCAACTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGATA-AAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
* *
21954798 GGATAGGCAATA
65 GGATAGGAAATG
21954810 ATCTTGCT
1 ATCTTGCT
21954818 GCGATTTGAT
Statistics
Matches: 731, Mismatches: 55, Indels: 59
0.87 0.07 0.07
Matches are distributed among these distances:
66 1 0.00
67 1 0.00
68 98 0.13
69 83 0.11
71 5 0.01
72 2 0.00
73 132 0.18
74 4 0.01
75 84 0.11
76 256 0.35
77 43 0.06
78 22 0.03
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:21954297 original size:144 final size:147
Alignment explanation
Indices: 21953928--21954801 Score: 1070
Period size: 144 Copynumber: 6.0 Consensus size: 147
21953918 GTGCTCCATC
* * * * * * *
21953928 TTGCTCTTACTTCAATTTCAAAGGGACAAAGGCTTGATATCTATCTCTACTTCAATTTCAAGAGG
1 TTGCTCTTACTTCAATTTC--AGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGG
* *
21953993 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCA
64 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCC-ACTCTACTTCA
*
21954058 ATTTCAAGAGGATAGGAAATGA
128 ATTTCAAGAGGAT-GG-AACGA
* *
21954080 TTTTGCTCTTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
1 --TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGG
* *
21954145 ATAGGAAATGATTTTGCTCTTACTTCAATTTCAGAGGTAAAGACATGTTATCCACTCTACTTCAA
64 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAA
21954210 TTTCAAGAGGAT-G-ACG-
129 TTTCAAGAGGATGGAACGA
21954226 TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGGAT
* *
21954291 AGGAAATGATTTTGCTCTTACTTCAATTTCAGAGGTAAAGACATGTTATCCACTCTACTTCAATT
66 AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAATT
21954356 TCAAGAGGAT-G-ACG-
131 TCAAGAGGATGGAACGA
21954370 TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGA-G--
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGGAT
* *
21954432 -GG---TGA-CGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAAT
66 AGGAAATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAAT
* *
21954492 TTCAAGCGGATAGGAAAAGA
130 TTCAAGAGGAT-GG-AACGA
* * *
21954512 TCTCGCTCCTACTTCAATTTCAGAGGTAAAGACGTG-T-TCC-ACTCTACTTCAATTTCAAGAGG
1 T-T-GCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGG
* * * * * *
21954574 ACAGGAAAAGATCTTGCTCCTACTTCAGTTTTAGAGATAAAGACGTG-T-TCCACTCTACTTCAA
64 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAA
* *
21954637 TTTCAAGAGGATATGGCATGA
129 TTTCAAGAGG--ATGGAACGA
*
21954658 TCTTGCTCTTACTTCAATTTCAGAGATAAAGAC-TCGTTATCCAACTCTACTTCAATTTCAAGGG
1 --TTGCTCTTACTTCAATTTCAGAGATAAAGACAT-GTTATCCAACTCTACTTCAATTTCAAGAG
* * * * * *
21954722 GATATGAGAA-GATCTAGCTCTTACTTCAATTTCAGAGAGATAAGACTTGATATCCAGCTTTACT
63 GATAGGA-AATGATCTTGCTCTTACTTCAATTTCAGAGATA-AAGACATGTTATCCA-CTCTACT
*
21954786 TCAACTTCAAGAGGAT
125 TCAATTTCAAGAGGAT
21954802 AGGCAATAAT
Statistics
Matches: 647, Mismatches: 44, Indels: 61
0.86 0.06 0.08
Matches are distributed among these distances:
137 63 0.10
139 1 0.00
140 2 0.00
141 22 0.03
142 5 0.01
143 3 0.00
144 232 0.36
145 3 0.00
146 55 0.09
147 7 0.01
148 38 0.06
149 52 0.08
150 9 0.01
151 27 0.04
152 90 0.14
153 19 0.03
154 19 0.03
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (147 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCAACTCTACTTCAATTTCAAGAGGAT
AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAATT
TCAAGAGGATGGAACGA
Found at i:21954353 original size:69 final size:69
Alignment explanation
Indices: 21954280--21954789 Score: 318
Period size: 73 Copynumber: 7.1 Consensus size: 69
21954270 CTACTTCAAT
* * *
21954280 TTCAAGAGGATAGGAAATGATTTTGCTCTTACTTCAATTTCAGAGGTAAAGACATGTTATCCACT
1 TTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACT
21954345 CTAC
66 CTAC
**** * *
21954349 TTCAATTTCA-A-GAGGATGA-CGTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCA
1 TTCAAGAGGATAGGA-AATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-
21954411 ACTCTAC
63 ACTCTAC
**** ** *
21954418 TTCAATTTCA-A-GAGGGTGA-CGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCA
1 TTCAAGAGGATAGGA-AATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCA
21954480 CTCTACTTC
64 CTCTA---C
* * * * *
21954489 AATTTCAAGCGGATAGGAAAAGATCTCGCTCCTACTTCAATTTCAGAGGTAAAGACGTGTTCCAC
1 ---TTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTT--A-
* * *
21954554 TCTACTTCAAT
60 TCCAC-TCTAC
* * * * * *
21954565 TTCAAGAGGACAGGAAAAGATCTTGCTCCTACTTCAGTTTTAGAGATAAAGACGTGTTCCACTCT
1 TTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTT--A-TCC
* *
21954630 ACTTCAAT
63 AC-TCTAC
*
21954638 TTCAAGAGGATATGG-CATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGAC-TCGTTATCCA
1 TTCAAGAGGATA-GGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGT-GTTATCC-
21954701 ACTCTACTTC
63 ACTCTA---C
* * * * * *
21954711 AATTTCAAGGGGATATGAGAA-GATCTAGCTCTTACTTCAATTTCAGAGAGATAAGACTTGATAT
1 ---TTCAAGAGGATAGGA-AATGATCTTGCTCTTACTTCAATTTCAGAGATA-AAGACGTGTTAT
*
21954775 CCAGCTTTAC
61 CCA-CTCTAC
21954785 TTCAA
1 TTCAA
21954790 CTTCAAGAGG
Statistics
Matches: 365, Mismatches: 46, Indels: 58
0.78 0.10 0.12
Matches are distributed among these distances:
67 2 0.01
68 50 0.14
69 71 0.19
70 5 0.01
71 9 0.02
72 1 0.00
73 114 0.31
74 9 0.02
75 36 0.10
76 43 0.12
77 17 0.05
78 5 0.01
79 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (69 bp):
TTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACT
CTAC
Found at i:21954747 original size:38 final size:38
Alignment explanation
Indices: 21954629--21954755 Score: 102
Period size: 38 Copynumber: 3.3 Consensus size: 38
21954619 TGTTCCACTC
* * *
21954629 TACTTCAATTTCAAGAGGATATG-GCATGATCTTGCTCT
1 TACTTCAATTTCAAGGGGATATGAG-AAGATCTAGCTCT
* * * * *
21954667 TACTTCAATTTC-A-GAGATA-AAGACTCGTTATCCAACTC-
1 TACTTCAATTTCAAGGGGATATGAGA--AG--ATCTAGCTCT
21954705 TACTTCAATTTCAAGGGGATATGAGAAGATCTAGCTCT
1 TACTTCAATTTCAAGGGGATATGAGAAGATCTAGCTCT
21954743 TACTTCAATTTCA
1 TACTTCAATTTCA
21954756 GAGAGATAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
35 1 0.01
36 5 0.07
37 9 0.13
38 37 0.54
39 8 0.12
40 5 0.07
41 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (38 bp):
TACTTCAATTTCAAGGGGATATGAGAAGATCTAGCTCT
Found at i:21966652 original size:30 final size:30
Alignment explanation
Indices: 21966609--21966799 Score: 219
Period size: 30 Copynumber: 6.4 Consensus size: 30
21966599 TTTGAGGGTG
* * *
21966609 AAATGGTAATTTTTG-AAAGTTTCGGGGTAA
1 AAAT-GTAATTTTGGAAAAGTTTTGGGGTTA
* * * *
21966639 AAATGCTATTTTTTG-AAA-TTTTCGGGTCA
1 AAATG-TAATTTTGGAAAAGTTTTGGGGTTA
* *
21966668 AAATGTAATTTTGGAAAAGTTTTAGGGTCA
1 AAATGTAATTTTGGAAAAGTTTTGGGGTTA
*
21966698 AAATGTAATTTTGGAAAAGTTTTAGGGTTA
1 AAATGTAATTTTGGAAAAGTTTTGGGGTTA
21966728 AAATGTAATTTTGGAAAAGTTTTGGGGTTA
1 AAATGTAATTTTGGAAAAGTTTTGGGGTTA
* *
21966758 AAATGTAATTTCTAG-AAAGTTTTGAGGTTA
1 AAATGTAATTT-TGGAAAAGTTTTGGGGTTA
21966788 AAATGTAATTTT
1 AAATGTAATTTT
21966800 TGGACAATTT
Statistics
Matches: 146, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
28 7 0.05
29 18 0.12
30 119 0.82
31 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.40
Consensus pattern (30 bp):
AAATGTAATTTTGGAAAAGTTTTGGGGTTA
Found at i:21966744 original size:60 final size:59
Alignment explanation
Indices: 21966541--21966799 Score: 230
Period size: 60 Copynumber: 4.4 Consensus size: 59
21966531 TAATTTGGGT
* * * *
21966541 TTTTAGGGGTAAAATGATAATTTTGTG-AAA---TCGGGGCTAAAAATGGAA-TTTAGGGAAG
1 TTTTAGGGTTAAAATG-TAATTTTG-GAAAAGTTTTGGGG-TAAAAATGTAATTTTA-GAAAG
* * * * * *
21966599 TTTGAGGG-TGAAATGGTAATTTTTG-AAAGTTTCGGGGTAAAAATGCTATTTTTTGAAA-
1 TTTTAGGGTTAAAAT-GTAATTTTGGAAAAGTTTTGGGGTAAAAATG-TAATTTTAGAAAG
* * * * *
21966657 TTTTCGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAG
1 TTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTAAAAATGTAATTTTAG-AAAG
*
21966717 TTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTCTAGAAAG
1 TTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTAAAAATGTAATTT-TAGAAAG
21966777 TTTT-GAGGTTAAAATGTAATTTT
1 TTTTAG-GGTTAAAATGTAATTTT
21966800 TGGACAATTT
Statistics
Matches: 167, Mismatches: 22, Indels: 22
0.79 0.10 0.10
Matches are distributed among these distances:
56 4 0.02
57 12 0.07
58 38 0.23
59 35 0.21
60 76 0.46
61 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (59 bp):
TTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTAAAAATGTAATTTTAGAAAG
Found at i:21968739 original size:6 final size:6
Alignment explanation
Indices: 21968722--21968800 Score: 74
Period size: 6 Copynumber: 13.5 Consensus size: 6
21968712 TTTGGACTTT
* * * * * *
21968722 AATTTA AA-TTA ATTTTA AATTTA AA-ATA AATTTA GACTCA AATTCA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
21968768 AATTTA AAGTTT- AATTTA AATTTA AATTTA AAT
1 AATTTA AA-TTTA AATTTA AATTTA AATTTA AAT
21968801 AAATCTAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 11 0.19
6 45 0.76
7 3 0.05
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:21968809 original size:16 final size:16
Alignment explanation
Indices: 21968722--21968839 Score: 83
Period size: 17 Copynumber: 6.9 Consensus size: 16
21968712 TTTGGACTTT
*
21968722 AATTTAAATTAATTTTA
1 AATTTAAA-TAAATTTA
21968739 AATTTAAAATAAATTTA
1 AATTT-AAATAAATTTA
* * *
21968756 GACTCAAATTCAAATTTA
1 AATTTAAA-T-AAATTTA
*
21968774 AAGTTTAATTTAAATTTA
1 AA-TTTAA-ATAAATTTA
*
21968792 AATTTAAATAAATCTA
1 AATTTAAATAAATTTA
* *
21968808 AATTCATATCAAATTTA
1 AATTTAAAT-AAATTTA
*
21968825 ATTTTAAAATAAATT
1 AATTT-AAATAAATT
21968840 AAAAAAAAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
16 17 0.22
17 34 0.44
18 23 0.29
19 4 0.05
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (16 bp):
AATTTAAATAAATTTA
Found at i:21969435 original size:3 final size:3
Alignment explanation
Indices: 21969427--21969453 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21969417 TTCTTTTGCT
21969427 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
21969454 ATATTGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:21969532 original size:6 final size:6
Alignment explanation
Indices: 21969523--21969567 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
21969513 AATATAAAAA
* *
21969523 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGA GAAGGA GAAGGG GAA
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAA
21969568 CAAAAAAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:21970025 original size:33 final size:32
Alignment explanation
Indices: 21969988--21970055 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
21969978 AATAATAAAT
* * * *
21969988 AATATTTAAATAATTTAATATGATGATGTATGA
1 AATATTTAAACAACTTAATACGATAATGTAT-A
21970021 AATATTTAAACAACTTAATACGATAATGTATA
1 AATATTTAAACAACTTAATACGATAATGTATA
21970053 AAT
1 AAT
21970056 TATAAATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 4 0.13
33 27 0.87
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (32 bp):
AATATTTAAACAACTTAATACGATAATGTATA
Found at i:21975758 original size:30 final size:30
Alignment explanation
Indices: 21975724--21975785 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
21975714 CTTAACAAAT
* *
21975724 AAATGCCTCTAAAATAGTAACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
21975754 AAATGCCTCTAAAATAATAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
21975784 AA
1 AA
21975786 TAAACTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.15, G:0.05, T:0.23
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAC
Found at i:21982912 original size:20 final size:19
Alignment explanation
Indices: 21982867--21982913 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
21982857 CTAAATCGAA
21982867 GACAAAAAGAAAATTTTGG
1 GACAAAAAGAAAATTTTGG
21982886 GACAAAAAGAAAATTTTGG
1 GACAAAAAGAAAATTTTGG
*
21982905 GGCAAAAAG
1 GACAAAAAG
21982914 CGTGAATGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.53, C:0.06, G:0.23, T:0.17
Consensus pattern (19 bp):
GACAAAAAGAAAATTTTGG
Found at i:21983138 original size:23 final size:23
Alignment explanation
Indices: 21983104--21983147 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
21983094 CCAATTAGGA
*
21983104 AATTATTATTTAGATTTAATTCT
1 AATTATTATTTAAATTTAATTCT
21983127 AATTATCT-TTTAAATTTAATT
1 AATTAT-TATTTAAATTTAATT
21983148 TGGATCCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (23 bp):
AATTATTATTTAAATTTAATTCT
Found at i:21985139 original size:16 final size:15
Alignment explanation
Indices: 21985114--21985148 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
21985104 AATGAAAATA
21985114 GAATGCGATTATTATG
1 GAATGCGATTATTA-G
*
21985130 GAATGTGATTATTAG
1 GAATGCGATTATTAG
21985145 GAAT
1 GAAT
21985149 TTGTTTGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (15 bp):
GAATGCGATTATTAG
Found at i:21986225 original size:91 final size:90
Alignment explanation
Indices: 21986113--21986299 Score: 275
Period size: 91 Copynumber: 2.1 Consensus size: 90
21986103 ATTAAACTTT
* **
21986113 GATTAGTCTAGATTATTTTATTATTATTTGACCTAAGAATTTAACCTATAAATAGGTTCTTTTAC
1 GATTAGTCTAGATTATTTTATTATTATTTGACCTAAGAATTTAACATATAAATAGACTCTTTTAC
*
21986178 AACCTTACAAAATACATTCATTAGA
66 AACCTTAAAAAATACATTCATTAGA
* *
21986203 GATTTGTCTTAGATTATTTTATTATTATTTGACTTAAGAATTTAACATATAAATAGACTCTTTTA
1 GATTAGTC-TAGATTATTTTATTATTATTTGACCTAAGAATTTAACATATAAATAGACTCTTTTA
* ** *
21986268 CAACCTTAAAAAACACACCCATTAAA
65 CAACCTTAAAAAATACATTCATTAGA
21986294 GATTAG
1 GATTAG
21986300 AATTTATAAT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 7 0.08
91 78 0.92
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (90 bp):
GATTAGTCTAGATTATTTTATTATTATTTGACCTAAGAATTTAACATATAAATAGACTCTTTTAC
AACCTTAAAAAATACATTCATTAGA
Found at i:21986839 original size:15 final size:15
Alignment explanation
Indices: 21986819--21986847 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21986809 CCTGTAAATT
21986819 CAAATCCAACCAATG
1 CAAATCCAACCAATG
21986834 CAAATCCAACCAAT
1 CAAATCCAACCAAT
21986848 AACTTCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.34, G:0.03, T:0.14
Consensus pattern (15 bp):
CAAATCCAACCAATG
Found at i:21987067 original size:21 final size:21
Alignment explanation
Indices: 21987042--21987094 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
21987032 CTTGTAGCCT
* *
21987042 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
*
21987063 CTGCTGCCTCCTCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
21987084 CTGCTGCCTCC
1 CTGCTGCCTCC
21987095 ACTTTAAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.00, C:0.47, G:0.19, T:0.34
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCG
Found at i:21987074 original size:24 final size:21
Alignment explanation
Indices: 21987054--21987094 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
21987044 GCTTCCTTCG
21987054 CTTGCCTCGCTGCTGCCTCCT
1 CTTGCCTCGCTGCTGCCTCCT
21987075 CTTGCCTCGCTGCTGCCTCC
1 CTTGCCTCGCTGCTGCCTCC
21987095 ACTTTAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.00, C:0.49, G:0.20, T:0.32
Consensus pattern (21 bp):
CTTGCCTCGCTGCTGCCTCCT
Found at i:21987082 original size:10 final size:12
Alignment explanation
Indices: 21987053--21987093 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
21987043 TGCTTCCTTC
21987053 GCTTGCCTCGCT
1 GCTTGCCTCGCT
21987065 GC-TGCCTC-CT
1 GCTTGCCTCGCT
21987075 -CTTGCCTCGCT
1 GCTTGCCTCGCT
21987086 GC-TGCCTC
1 GCTTGCCTC
21987094 CACTTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.04
10 8 0.31
11 14 0.54
12 3 0.12
ACGTcount: A:0.00, C:0.46, G:0.22, T:0.32
Consensus pattern (12 bp):
GCTTGCCTCGCT
Found at i:21987228 original size:66 final size:67
Alignment explanation
Indices: 21987080--21987238 Score: 248
Period size: 66 Copynumber: 2.4 Consensus size: 67
21987070 CTCCTCTTGC
* * * *
21987080 CTCGCTGCTGCCTCCACTTTAAGTTGTAGGTGGAGTTCTTCATATTTTTTTTTGAGACTCTGCTT
1 CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTTGAGACTCTGCTT
21987145 CT
66 CT
* * *
21987147 CTCACTGCAGCCTCCTCTTTAAGTTTTAGATGGAGTTCATCATA-TTTTTTTTGAGCCTCTGCTT
1 CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTTGAGACTCTGCTT
21987211 CT
66 CT
21987213 CTCGCTGCAGCCTCCTCTTTAAGTTG
1 CTCGCTGCAGCCTCCTCTTTAAGTTG
21987239 AGCAATTTGC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
66 45 0.54
67 38 0.46
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (67 bp):
CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATATTTTTTTTTGAGACTCTGCTT
CT
Found at i:21993168 original size:70 final size:69
Alignment explanation
Indices: 21993080--21993260 Score: 222
Period size: 69 Copynumber: 2.6 Consensus size: 69
21993070 TAAACTAAAT
21993080 AATTAAATATTTGAATTGTTTTTAATAATTAAATATTAAATTAAATATAATTAAATAATTAA-AT
1 AATTAAATATTTG-ATTGTTTTTAATAATTAAATATTAAATTAAATATAATTAAATAA-TAACAT
21993144 ATTTTG
64 ATTTTG
* * * *
21993150 AATTAAATATTTAGATTG-TTTTAATAATTAAATATTTAATTAAATGTATTTAAATAATAACATT
1 AATTAAATATTT-GATTGTTTTTAATAATTAAATATTAAATTAAATATAATTAAATAATAACATA
*
21993214 TTTTT
65 TTTTG
* * * *
21993219 CATTAAATATTTCGGTTGTTTTTAATAAATAATTAATTAAAT
1 AATTAAATATTT-GATTGTTTTTAATAATTAAAT-ATTAAAT
21993261 ATTTAAATAT
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
68 3 0.03
69 57 0.59
70 29 0.30
71 7 0.07
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (69 bp):
AATTAAATATTTGATTGTTTTTAATAATTAAATATTAAATTAAATATAATTAAATAATAACATAT
TTTG
Found at i:21993202 original size:14 final size:12
Alignment explanation
Indices: 21993105--21993194 Score: 52
Period size: 12 Copynumber: 7.8 Consensus size: 12
21993095 TTGTTTTTAA
21993105 TAATTAAATATT
1 TAATTAAATATT
*
21993117 AAATTAAATA--
1 TAATTAAATATT
21993127 TAATT-AA-A--
1 TAATTAAATATT
21993135 TAATTAAATATTT
1 TAATTAAATA-TT
21993148 TGAATTAAATATT
1 T-AATTAAATATT
* *
21993161 TAGATT--GTTTT
1 TA-ATTAAATATT
21993172 AATAATTAAATATT
1 --TAATTAAATATT
21993186 TAATTAAAT
1 TAATTAAAT
21993195 GTATTTAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 22
0.69 0.07 0.25
Matches are distributed among these distances:
8 6 0.10
9 4 0.07
10 5 0.08
11 3 0.05
12 22 0.36
13 9 0.15
14 12 0.20
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TAATTAAATATT
Found at i:21993377 original size:104 final size:108
Alignment explanation
Indices: 21993152--21993432 Score: 356
Period size: 112 Copynumber: 2.6 Consensus size: 108
21993142 ATATTTTGAA
* * * * * *
21993152 TTAAATATTTAGATTG-TTTTAATAATTAAATATTTAATTAAATGTATTTAAATAATAACATTTT
1 TTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAATTAAATAATAAAATATT
* * *
21993216 TTTCATTAAATATTTCGGTTGTTTTTAATAAATAATTAATTAAATAT
66 TTTAAGTAAATATTTCGGTTATTTTTAAT-AAT-ATTAATT--ATAT
* *
21993263 TTAAATATTTGGATTGTTTTTAATTATTAAATTTTTAATTAAATATAATTAACTAATAAAATATT
1 TTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAATTAAATAATAAAATATT
*
21993328 TTTAAGTAAATATTTGGGTTATTTTTAAT-AT-TT-ATT-TAT
66 TTTAAGTAAATATTTCGGTTATTTTTAATAATATTAATTATAT
* * *
21993367 TTAAATATTTGAATTGTTTTTAATTATTAAATATTTAATTATATATAAATAAATAATAAAATATT
1 TTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAATTAAATAATAAAATATT
21993432 T
66 T
21993433 AATTATATAT
Statistics
Matches: 152, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
104 64 0.42
107 3 0.02
108 2 0.01
110 2 0.01
111 15 0.10
112 66 0.43
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (108 bp):
TTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAATTAAATAATAAAATATT
TTTAAGTAAATATTTCGGTTATTTTTAATAATATTAATTATAT
Found at i:21993419 original size:22 final size:22
Alignment explanation
Indices: 21993394--21993484 Score: 61
Period size: 22 Copynumber: 4.4 Consensus size: 22
21993384 TTTTAATTAT
21993394 TAAATATTTAATTATATATAAA
1 TAAATATTTAATTATATATAAA
* * *
21993416 TAAATA-ATAA-AATAT-TTAA
1 TAAATATTTAATTATATATAAA
* * *
21993435 T-TATATATAACTA-A-AT-AA
1 TAAATATTTAATTATATATAAA
*
21993453 TAAAATATTTAATTATATATAAC
1 T-AAATATTTAATTATATATAAA
21993476 TAAATATTT
1 TAAATATTT
21993485 GGGTTATTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
18 6 0.12
19 10 0.19
20 14 0.27
21 4 0.08
22 16 0.31
23 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TAAATATTTAATTATATATAAA
Found at i:21993429 original size:30 final size:30
Alignment explanation
Indices: 21993395--21993481 Score: 165
Period size: 30 Copynumber: 2.9 Consensus size: 30
21993385 TTTAATTATT
*
21993395 AAATATTTAATTATATATAAATAAATAATA
1 AAATATTTAATTATATATAACTAAATAATA
21993425 AAATATTTAATTATATATAACTAAATAATA
1 AAATATTTAATTATATATAACTAAATAATA
21993455 AAATATTTAATTATATATAACTAAATA
1 AAATATTTAATTATATATAACTAAATA
21993482 TTTGGGTTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (30 bp):
AAATATTTAATTATATATAACTAAATAATA
Found at i:21993523 original size:24 final size:24
Alignment explanation
Indices: 21993448--21993530 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
21993438 TATATAACTA
* * *
21993448 AATAATAAAATATTT-AATTATAT
1 AATAATTAAATATTTGAATTTTTT
* **
21993471 -ATAACTAAATATTTGGGTTATTTTT
1 AATAATTAAATATTT-GAAT-TTTTT
21993496 AATAATTAAATATTTGAATTTTTT
1 AATAATTAAATATTTGAATTTTTT
21993520 AATAATTAAAT
1 AATAATTAAAT
21993531 TATTAAATAT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
22 12 0.26
24 17 0.36
25 5 0.11
26 13 0.28
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (24 bp):
AATAATTAAATATTTGAATTTTTT
Found at i:21993547 original size:24 final size:23
Alignment explanation
Indices: 21993496--21993577 Score: 60
Period size: 24 Copynumber: 3.5 Consensus size: 23
21993486 GGTTATTTTT
* *
21993496 AATAATTAAA-TATTTGAATTTTTT
1 AATAATTAAATTA-TT-AATATTTA
21993520 AATAATTAAATTATTAAATATTTA
1 AATAATTAAATTATT-AATATTTA
* * *
21993544 AAT-ATTTAATTAGTAATAATTA
1 AATAATTAAATTATTAATATTTA
* *
21993566 ACTAATGAAATT
1 AATAATTAAATT
21993578 TGTTAATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
22 9 0.19
23 15 0.32
24 21 0.45
25 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (23 bp):
AATAATTAAATTATTAATATTTA
Found at i:21993550 original size:8 final size:8
Alignment explanation
Indices: 21993496--21993552 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
21993486 GGTTATTTTT
*
21993496 AATAATTA
1 AATATTTA
*
21993504 AATATTTG
1 AATATTTA
* *
21993512 AATTTTTT
1 AATATTTA
*
21993520 AATAATTA
1 AATATTTA
21993528 AAT-TATTA
1 AATAT-TTA
21993536 AATATTTA
1 AATATTTA
21993544 AATATTTA
1 AATATTTA
21993552 A
1 A
21993553 TTAGTAATAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 38 0.97
9 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (8 bp):
AATATTTA
Found at i:21996492 original size:41 final size:41
Alignment explanation
Indices: 21996447--21996528 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
21996437 ATAATTTATT
21996447 ATTTGACTTTTAGCGGCGCTTTTACATAAGCGCCGCTAATG
1 ATTTGACTTTTAGCGGCGCTTTTACATAAGCGCCGCTAATG
* *
21996488 ATTTGACTTTTAGCGGCGTTTTTTCATAAGCGCCGCTAATG
1 ATTTGACTTTTAGCGGCGCTTTTACATAAGCGCCGCTAATG
21996529 CTCTTTTCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (41 bp):
ATTTGACTTTTAGCGGCGCTTTTACATAAGCGCCGCTAATG
Found at i:21997950 original size:24 final size:23
Alignment explanation
Indices: 21997918--21998072 Score: 67
Period size: 24 Copynumber: 7.3 Consensus size: 23
21997908 CTTATGGGAA
*
21997918 AGCGTCGCTATTGCTCCGACCTTT
1 AGCGGCGCT-TTGCTCCGACCTTT
* *
21997942 AGCGGCGC-TT--TCCTA---TA
1 AGCGGCGCTTTGCTCCGACCTTT
*
21997959 AGCGCCGCTATTGCTCCGACCTTT
1 AGCGGCGCT-TTGCTCCGACCTTT
*
21997983 AGCGGCGC-TT-C-CCGA---TA
1 AGCGGCGCTTTGCTCCGACCTTT
*
21998000 AGCGCCGCTGTTGCTCCGACCTTT
1 AGCGGCGCT-TTGCTCCGACCTTT
* *
21998024 AGCGGCGC-TTG---C-A-CATA
1 AGCGGCGCTTTGCTCCGACCTTT
*
21998041 AGCGCCGCTGTTGCTCCGACCTTT
1 AGCGGCGCT-TTGCTCCGACCTTT
21998065 AGCGGCGC
1 AGCGGCGC
21998073 CTACCCATAA
Statistics
Matches: 93, Mismatches: 17, Indels: 42
0.61 0.11 0.28
Matches are distributed among these distances:
17 25 0.27
18 1 0.01
19 8 0.09
20 9 0.10
21 9 0.10
22 8 0.09
23 1 0.01
24 32 0.34
ACGTcount: A:0.14, C:0.35, G:0.26, T:0.26
Consensus pattern (23 bp):
AGCGGCGCTTTGCTCCGACCTTT
Found at i:21997951 original size:41 final size:41
Alignment explanation
Indices: 21997917--21998198 Score: 338
Period size: 41 Copynumber: 6.9 Consensus size: 41
21997907 GCTTATGGGA
* * *
21997917 AAGCGTCGCTATTGCTCCGACCTTTAGCGGCGCTTTCCTAT
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTCCGAT
* *
21997958 AAGCGCCGCTATTGCTCCGACCTTTAGCGGCGCTTCCCGAT
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTCCGAT
*
21997999 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTGCAC-AT
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTC-CGAT
* * *
21998040 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCCTACCCAT
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTCCGAT
* ***
21998081 AAGCGCCGCTGTTGCTCCGACCTTTAGCAGCGCTTAAGGGA-
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTT-TCCGAT
* *
21998122 AAGCGCCGCTGTTGCTCCGACATTTAGCGGCACTTTACCG-T
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTT-CCGAT
* * * *
21998163 AAGCGCCGCTATTGCT-CTACCTTTTGCGGCGTTTTC
1 AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTC
21998199 TTTCCAAACG
Statistics
Matches: 212, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.00
40 15 0.07
41 193 0.91
42 3 0.01
ACGTcount: A:0.15, C:0.33, G:0.25, T:0.27
Consensus pattern (41 bp):
AAGCGCCGCTGTTGCTCCGACCTTTAGCGGCGCTTTCCGAT
Found at i:22007763 original size:28 final size:27
Alignment explanation
Indices: 22007719--22007771 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
22007709 CAGACAACTA
*
22007719 TATAAAATATTTTAATAAATAAAATATC
1 TATAAAATATTTAAAT-AATAAAATATC
*
22007747 TATAAAAT-TATTAAATATTAAAATA
1 TATAAAATAT-TTAAATAATAAAATA
22007772 ATATAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
TATAAAATATTTAAATAATAAAATATC
Found at i:22018528 original size:20 final size:20
Alignment explanation
Indices: 22018476--22018529 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
22018466 CTCCACTGAG
* * *
22018476 ACTTCTACCGGTAGAACTCC
1 ACTTCTACTGATACAACTCC
*
22018496 ACTTTTA-TCGATACAACTCC
1 ACTTCTACT-GATACAACTCC
22018516 ACTTCTACTGATAC
1 ACTTCTACTGATAC
22018530 CTTGAAGACT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (20 bp):
ACTTCTACTGATACAACTCC
Found at i:22020650 original size:6 final size:6
Alignment explanation
Indices: 22020639--22020677 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
22020629 TGATCAAAAT
* * *
22020639 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
22020678 TATGAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:22023953 original size:24 final size:22
Alignment explanation
Indices: 22023905--22023954 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
22023895 AAAATTTATC
* *
22023905 AAATATAAATATCATATTATAA
1 AAATATAAATATCAAATTAAAA
*
22023927 AAATATATATATCAAATTAGAAGA
1 AAATATAAATATCAAATTA-AA-A
22023951 AAAT
1 AAAT
22023955 CAAAGTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 17 0.74
23 1 0.04
24 5 0.22
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (22 bp):
AAATATAAATATCAAATTAAAA
Found at i:22024678 original size:26 final size:28
Alignment explanation
Indices: 22024623--22024679 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
22024613 AGGATTACCC
*
22024623 TAATCAAATTTTATCTTTATTTAATTTA
1 TAATCAAATTTTATCTTTATTTAATATA
*
22024651 TAAT-AAATTTTAT-TTT-TTTTATGATA
1 TAATCAAATTTTATCTTTATTTAAT-ATA
22024677 TAA
1 TAA
22024680 AAGTAAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 8 0.31
27 9 0.35
28 4 0.15
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (28 bp):
TAATCAAATTTTATCTTTATTTAATATA
Found at i:22025088 original size:16 final size:17
Alignment explanation
Indices: 22025059--22025090 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
22025049 TTAAAATTTG
22025059 TATTTCATCCATTCCTC
1 TATTTCATCCATTCCTC
22025076 TATTTCA-CCATTCCT
1 TATTTCATCCATTCCT
22025091 AACATTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.19, C:0.34, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTCATCCATTCCTC
Found at i:22027203 original size:24 final size:24
Alignment explanation
Indices: 22027174--22027219 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
22027164 TAAACTACAG
22027174 ATGCATATTCAAATTCAGATACGT
1 ATGCATATTCAAATTCAGATACGT
*
22027198 ATGCATATTCAGATTCAGATAC
1 ATGCATATTCAAATTCAGATAC
22027220 AAACGCACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (24 bp):
ATGCATATTCAAATTCAGATACGT
Found at i:22029715 original size:22 final size:21
Alignment explanation
Indices: 22029670--22029715 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
22029660 CAATTTGATT
* *
22029670 TATTTTTTAATTTTGTAATTA
1 TATTTGTTAATTTTATAATTA
*
22029691 TATTTGTTATTTTTATATATTA
1 TATTTGTTAATTTTATA-ATTA
22029713 TAT
1 TAT
22029716 CATTTATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TATTTGTTAATTTTATAATTA
Found at i:22030675 original size:17 final size:17
Alignment explanation
Indices: 22030645--22030686 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
22030635 AATATTTAAA
*
22030645 AATTTTATTAAATATAAT
1 AATTATATTAAATAT-AT
*
22030663 AA-TATATTTAATATAT
1 AATTATATTAAATATAT
22030679 AATTATAT
1 AATTATAT
22030687 ATATTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 4 0.19
17 15 0.71
18 2 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTATATTAAATATAT
Found at i:22030680 original size:19 final size:19
Alignment explanation
Indices: 22030650--22030705 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
22030640 TTAAAAATTT
22030650 TATTAAATATAATAATATA
1 TATTAAATATAATAATATA
*
22030669 T-TTAATATATAATTATATA
1 TATTAA-ATATAATAATATA
*
22030688 TATTAAAAATAATAATAT
1 TATTAAATATAATAATAT
22030706 TGAATTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 4 0.12
19 24 0.75
20 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TATTAAATATAATAATATA
Found at i:22035790 original size:21 final size:20
Alignment explanation
Indices: 22035755--22035795 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
22035745 AGTAAGTAGA
*
22035755 TTTAATAAAGGTTAAAAATG
1 TTTAATAAAGCTTAAAAATG
*
22035775 TTTAATTAAAGCTTAATAATG
1 TTTAA-TAAAGCTTAAAAATG
22035796 AAAGTCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.39
Consensus pattern (20 bp):
TTTAATAAAGCTTAAAAATG
Found at i:22036723 original size:51 final size:51
Alignment explanation
Indices: 22036653--22036856 Score: 282
Period size: 51 Copynumber: 4.0 Consensus size: 51
22036643 GCCGTAAACG
22036653 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
22036705 AAAGGTCCGATGAGTAAGTGTTATCGTGAGTAAATGAATTCTTTATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
22036756 AAAGGTCCGATGACCAAGTGTCATCGTGAGTAAATGAATCCATAACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
22036807 AAAGGTCCGATGACTCAGTGTCATCATGAGTATATGAATTCCTATACGGA
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGA
22036857 ACAAGGGGTC
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
51 120 0.92
52 11 0.08
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:22037666 original size:21 final size:22
Alignment explanation
Indices: 22037642--22037701 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
22037632 TAGTTGCATG
22037642 ACTTGTATCGGTAGAAATTA-T
1 ACTTGTATCGGTAGAAATTAGT
22037663 ACTTGTATCGGTAG-AATTAGT
1 ACTTGTATCGGTAGAAATTAGT
***
22037684 AAAAGTATCGGTAGAAAT
1 ACTTGTATCGGTAGAAAT
22037702 CTACACAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.15
21 26 0.76
22 3 0.09
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (22 bp):
ACTTGTATCGGTAGAAATTAGT
Found at i:22043194 original size:7 final size:7
Alignment explanation
Indices: 22043182--22043207 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22043172 TCATCCTATT
22043182 TTCTTTC
1 TTCTTTC
22043189 TTCTTTC
1 TTCTTTC
22043196 TTCTTTC
1 TTCTTTC
22043203 TTCTT
1 TTCTT
22043208 CACACGACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCTTTC
Found at i:22044041 original size:51 final size:51
Alignment explanation
Indices: 22043971--22044209 Score: 291
Period size: 51 Copynumber: 4.6 Consensus size: 51
22043961 GCCATAAACG
22043971 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
22044023 AAAGGTCCGATGAGTAAGTGTTATCGTGAGTAAATGAATTCTTTATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * * *
22044074 AAAGGTCCGATGACCAAGTGTCATCGTGAGTAAATGAATCCATAATGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * **
22044125 AAAGGTCCGATGACTCAGTGTCATCGTGAGTATATGAATTCCTATACGGAAC
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATT
* *
22044177 AAGGGGTCCGATGACTATA-TGTCATCGTAAGTA
1 AA-AGGTCCGATGACTA-AGTGTCATCGTGAGTA
22044210 TTAAATGAAA
Statistics
Matches: 160, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
51 122 0.76
52 12 0.08
53 25 0.16
54 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:22044969 original size:21 final size:20
Alignment explanation
Indices: 22044943--22044995 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
22044933 GGAGTTTTTG
22044943 GTATCGGTAG-TTGCATGACTT
1 GTATCGGTAGATT-CAT-ACTT
* *
22044964 GTATCGATAGAATTTATACTT
1 GTATCGGTAG-ATTCATACTT
22044985 GTATCGGTAGA
1 GTATCGGTAGA
22044996 ATTAGTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 2 0.07
23 2 0.07
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (20 bp):
GTATCGGTAGATTCATACTT
Found at i:22055051 original size:15 final size:13
Alignment explanation
Indices: 22055023--22055063 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
22055013 AGAATGTGAA
22055023 CTATTAATTTTTT
1 CTATTAATTTTTT
22055036 CTATTAATCATTTTT
1 CTATTAAT--TTTTT
*
22055051 CTAATAATTTTTT
1 CTATTAATTTTTT
22055064 AATTTGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 13 0.52
15 12 0.48
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (13 bp):
CTATTAATTTTTT
Found at i:22060831 original size:18 final size:17
Alignment explanation
Indices: 22060808--22060846 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22060798 AGTTAAACTG
* *
22060808 ATTTTTATAATTATTTTT
1 ATTTTTAAAAATA-TTTT
22060826 ATTTTTAAAAATATTTT
1 ATTTTTAAAAATATTTT
22060843 ATTT
1 ATTT
22060847 GCTTTGAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTAAAAATATTTT
Found at i:22061454 original size:30 final size:30
Alignment explanation
Indices: 22061420--22061483 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
22061410 AATTTTCAAC
22061420 TCAATCACTCAAC-T-TTAGAAAAATAACAAA
1 TCAATCACT-AACATATTA-AAAAATAACAAA
*
22061450 TCAATCACTAACATTATTAAAAAATGACAAA
1 TCAATCACTAACA-TATTAAAAAATAACAAA
22061481 TCA
1 TCA
22061484 GCCACCCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 3 0.10
30 9 0.30
31 15 0.50
32 3 0.10
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.25
Consensus pattern (30 bp):
TCAATCACTAACATATTAAAAAATAACAAA
Found at i:22061882 original size:19 final size:19
Alignment explanation
Indices: 22061858--22061894 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22061848 AATCTATCAA
22061858 CCCAAAACCTTATTCGAGT
1 CCCAAAACCTTATTCGAGT
22061877 CCCAAAACCTTATTCGAG
1 CCCAAAACCTTATTCGAG
22061895 GTTCTCAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.24
Consensus pattern (19 bp):
CCCAAAACCTTATTCGAGT
Found at i:22064116 original size:16 final size:17
Alignment explanation
Indices: 22064091--22064127 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
22064081 TTATTTAAAT
*
22064091 AATT-ATAAAATTAT-A
1 AATTAATAAAATAATGA
22064106 AATTAATAAAATAATGA
1 AATTAATAAAATAATGA
22064123 AATTA
1 AATTA
22064128 TATTTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 4 0.21
16 9 0.47
17 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
AATTAATAAAATAATGA
Found at i:22069423 original size:22 final size:19
Alignment explanation
Indices: 22069394--22069436 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
22069384 CCTTATAATC
*
22069394 ATTTAAGCTTAATTTCTATCA
1 ATTTAAGCCTAA-TTC-ATCA
22069415 ATTTCAAGCCTAATTCATCA
1 ATTT-AAGCCTAATTCATCA
22069435 AT
1 AT
22069437 ATCTCAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 7 0.35
22 7 0.35
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTTAAGCCTAATTCATCA
Found at i:22073834 original size:20 final size:20
Alignment explanation
Indices: 22073809--22073854 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
22073799 TCATTAAGCT
22073809 TTAATT-AACCACTCTTTAC-C
1 TTAATTAAACC-CT-TTTACAC
22073829 TTAATTAAACCCTTTTACAC
1 TTAATTAAACCCTTTTACAC
22073849 TTAATT
1 TTAATT
22073855 TAAATCATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 15 0.62
21 4 0.17
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAATTAAACCCTTTTACAC
Found at i:22074934 original size:58 final size:58
Alignment explanation
Indices: 22074870--22074989 Score: 188
Period size: 58 Copynumber: 2.1 Consensus size: 58
22074860 AAAAGAAGTT
* * *
22074870 GTTTATGAGTGTTATTT-AGGAATAAAATTATATTTGGGTTTTAAAATATTTGGGTTTA
1 GTTTATGAGTGTT-TTTGAAGAATAAAATTATATTTGGGTTTAAAAATATTTGGATTTA
*
22074928 GTTTATGAGTGTTTTTGAAGAATGAAATTATATTTGGGTTTAAAAATATTTGGATTTA
1 GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGTTTAAAAATATTTGGATTTA
22074986 GTTT
1 GTTT
22074990 GTTGATGGGT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
57 3 0.05
58 54 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (58 bp):
GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGTTTAAAAATATTTGGATTTA
Found at i:22085327 original size:11 final size:12
Alignment explanation
Indices: 22085311--22085367 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 12
22085301 ATATATTCAT
22085311 TATTTTA-AATA
1 TATTTTATAATA
22085322 TATTTTATAATA
1 TATTTTATAATA
*
22085334 TATCTATCTTAAATATA
1 TA--T-T-TTATA-ATA
22085351 TATTTTATAATA
1 TATTTTATAATA
22085363 TATTT
1 TATTT
22085368 ATTTTAAGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
11 7 0.18
12 14 0.37
13 4 0.11
14 2 0.05
15 2 0.05
16 4 0.11
17 5 0.13
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTTTATAATA
Found at i:22085357 original size:29 final size:29
Alignment explanation
Indices: 22085319--22085374 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
22085309 ATTATTTTAA
22085319 ATATATTTTATAATATATCTATCTTAAAT
1 ATATATTTTATAATATATCTATCTTAAAT
* *
22085348 ATATATTTTATAATATATTTATTTTAA
1 ATATATTTTATAATATATCTATCTTAA
22085375 GTCAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (29 bp):
ATATATTTTATAATATATCTATCTTAAAT
Found at i:22085370 original size:16 final size:15
Alignment explanation
Indices: 22085300--22085373 Score: 66
Period size: 16 Copynumber: 4.9 Consensus size: 15
22085290 TAAATATATC
*
22085300 AATATATTCATTATTTT
1 AATATATT-ATT-TTAT
22085317 AA-ATA-TATTTTAT
1 AATATATTATTTTAT
*
22085330 AATATATCTATCTTA-
1 AATATAT-TATTTTAT
22085345 AATATA-TATTTTAT
1 AATATATTATTTTAT
22085359 AATATATTTATTTTA
1 AATATA-TTATTTTA
22085374 AGTCAGTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
13 11 0.23
14 12 0.25
15 7 0.15
16 16 0.33
17 2 0.04
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATATTATTTTAT
Found at i:22089308 original size:7 final size:7
Alignment explanation
Indices: 22089298--22089336 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
22089288 CCCTAAATCA
*
22089298 TAAACAT
1 TAAACCT
*
22089305 TAAAGCT
1 TAAACCT
22089312 TAAACCT
1 TAAACCT
22089319 TAAACCT
1 TAAACCT
*
22089326 TAAACTT
1 TAAACCT
22089333 TAAA
1 TAAA
22089337 TTCTAAACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (7 bp):
TAAACCT
Found at i:22089315 original size:21 final size:21
Alignment explanation
Indices: 22089291--22089337 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
22089281 ATATTGACCC
22089291 TAAATCATAAACATTAAAGC-T
1 TAAATCATAAACATTAAA-CTT
* * *
22089312 TAAACCTTAAACCTTAAACTT
1 TAAATCATAAACATTAAACTT
22089333 TAAAT
1 TAAAT
22089338 TCTAAACCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAATCATAAACATTAAACTT
Found at i:22089376 original size:26 final size:26
Alignment explanation
Indices: 22089347--22089453 Score: 124
Period size: 26 Copynumber: 4.0 Consensus size: 26
22089337 TTCTAAACCC
*
22089347 TAAATACAAACATAAACATGATTAAT
1 TAAATACAAACATAAACATAATTAAT
* * *
22089373 TAAATACAAACATAAAAATTATTGAT
1 TAAATACAAACATAAACATAATTAAT
*
22089399 TAAATACAAATATAAACATAATTAAT
1 TAAATACAAACATAAACATAATTAAT
* **
22089425 TCCAAATTCATTCATAAACATAATTAAT
1 T--AAATACAAACATAAACATAATTAAT
22089453 T
1 T
22089454 CCAAATGAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 46 0.68
28 22 0.32
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (26 bp):
TAAATACAAACATAAACATAATTAAT
Found at i:22089998 original size:18 final size:18
Alignment explanation
Indices: 22089977--22090022 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
22089967 TCAAGCTCGG
* *
22089977 GATCGTGCTTGGGCTCAA
1 GATCGAGCTCGGGCTCAA
*
22089995 GATCGAGCTCGTGCTCAA
1 GATCGAGCTCGGGCTCAA
*
22090013 GCTCGAGCTC
1 GATCGAGCTC
22090023 AAGCGGATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (18 bp):
GATCGAGCTCGGGCTCAA
Found at i:22091070 original size:18 final size:18
Alignment explanation
Indices: 22091047--22091084 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
22091037 TATTAAGGGT
22091047 AATATTGTAATTTTCCCA
1 AATATTGTAATTTTCCCA
22091065 AATATTGTAATTTTCCCA
1 AATATTGTAATTTTCCCA
22091083 AA
1 AA
22091085 AAGGACTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (18 bp):
AATATTGTAATTTTCCCA
Found at i:22099849 original size:151 final size:151
Alignment explanation
Indices: 22099575--22099871 Score: 504
Period size: 151 Copynumber: 2.0 Consensus size: 151
22099565 ATTTCCACGC
22099575 ACCTCACTTCTTCATCTTCATCTTCTTCCCTTTTGATTCCAATATCTTTAATTACAAATCTGTCT
1 ACCTCACTTCTTCATCTTCATCTTCTTCCCTTTTGATTCCAATATCTTTAATTACAAATCTGTCT
*
22099640 TAAAGCTTGAATCTTTGAAACCCATTAACCCAAAAAAACGTAACGGGAAGAAGATATTGGAATCA
66 CAAAGCTTGAATCTTTGAAACCCATTAACCCAAAAAAACGTAACGGGAAGAAGATATTGGAATCA
* *
22099705 AATATATTGAATCTTTCACAT
131 AAGATATTAAATCTTTCACAT
* * * *
22099726 ACCTCTCTTCTTCATTTTCATCTTCTTCCCTTTTGTTTCCAATATCTTTAGTTACAAATCTGTCT
1 ACCTCACTTCTTCATCTTCATCTTCTTCCCTTTTGATTCCAATATCTTTAATTACAAATCTGTCT
* * *
22099791 CAAAGTTTGAATCTTTGAAACCCATTAACCCAAAAAAACTTAACGGGAAGAAGATATTGGGATCA
66 CAAAGCTTGAATCTTTGAAACCCATTAACCCAAAAAAACGTAACGGGAAGAAGATATTGGAATCA
22099856 AAGATATTAAATCTTT
131 AAGATATTAAATCTTT
22099872 GGGTTAATGG
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 136 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (151 bp):
ACCTCACTTCTTCATCTTCATCTTCTTCCCTTTTGATTCCAATATCTTTAATTACAAATCTGTCT
CAAAGCTTGAATCTTTGAAACCCATTAACCCAAAAAAACGTAACGGGAAGAAGATATTGGAATCA
AAGATATTAAATCTTTCACAT
Found at i:22102365 original size:20 final size:21
Alignment explanation
Indices: 22102342--22102385 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
22102332 AAATAAAGAG
*
22102342 AAAGAAAAAAAAAG-GAAAAT
1 AAAGAAAAAAAAAGAAAAAAT
*
22102362 AAAGAAATAAAAAGAAAAAAT
1 AAAGAAAAAAAAAGAAAAAAT
22102383 AAA
1 AAA
22102386 ATTGTTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (21 bp):
AAAGAAAAAAAAAGAAAAAAT
Found at i:22102386 original size:26 final size:26
Alignment explanation
Indices: 22102331--22102387 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
22102321 AGAAGAGAAA
*
22102331 AAAATAAAGAGAAAGAAAAAAAAAGG
1 AAAATAAAGAGAAAGAAAAAAAAAAG
*
22102357 AAAATAAAGA-AATA-AAAAGAAAAAAT
1 AAAATAAAGAGAA-AGAAAA-AAAAAAG
22102383 AAAAT
1 AAAAT
22102388 TGTTCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (26 bp):
AAAATAAAGAGAAAGAAAAAAAAAAG
Found at i:22110422 original size:12 final size:12
Alignment explanation
Indices: 22110407--22110443 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
22110397 ATTGGTGAAA
22110407 ATATATAAAAAT
1 ATATATAAAAAT
22110419 ATATTTATAAAAAT
1 ATA--TATAAAAAT
22110433 ATATATAAAAA
1 ATATATAAAAA
22110444 CTAAATGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
14 12 0.52
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATATAAAAAT
Found at i:22118867 original size:22 final size:22
Alignment explanation
Indices: 22118842--22118883 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22118832 ATCTCCATTG
* *
22118842 ATGAAATTTTAGAATCTTTTGA
1 ATGAAATATTAAAATCTTTTGA
22118864 ATGAAATATTAAAATCTTTT
1 ATGAAATATTAAAATCTTTT
22118884 CATACTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (22 bp):
ATGAAATATTAAAATCTTTTGA
Found at i:22127827 original size:19 final size:19
Alignment explanation
Indices: 22127803--22127842 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
22127793 TGACGCTGCA
22127803 GAGTCAATAAAACTAGAGG
1 GAGTCAATAAAACTAGAGG
22127822 GAGTCAATAAAACTAGAGG
1 GAGTCAATAAAACTAGAGG
22127841 GA
1 GA
22127843 AGGATCAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.28, T:0.15
Consensus pattern (19 bp):
GAGTCAATAAAACTAGAGG
Found at i:22130816 original size:6 final size:6
Alignment explanation
Indices: 22130805--22130837 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
22130795 TGATCAAAAT
*
22130805 TGAAAG TGAAAG TGAAAG TGAAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
22130838 TATGAATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.21
Consensus pattern (6 bp):
TGAAAG
Found at i:22136197 original size:26 final size:26
Alignment explanation
Indices: 22136154--22136203 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22136144 TAATTAATAA
*
22136154 TATTATTATAATAAATAATAATATCT
1 TATTATTATAATAAATAAAAATATCT
*
22136180 TATTATT-TAATATTATAAAAATAT
1 TATTATTATAATA-AATAAAAATAT
22136204 AAGAGAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
TATTATTATAATAAATAAAAATATCT
Found at i:22137231 original size:18 final size:18
Alignment explanation
Indices: 22137203--22137246 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22137193 TGATTTGATC
*
22137203 ATGACAAAATAAAAATAAT
1 ATGA-AAAATAAAAATAAA
*
22137222 ATGAAAAATAAAATTAAA
1 ATGAAAAATAAAAATAAA
22137240 ATGAAAA
1 ATGAAAA
22137247 CTGATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (18 bp):
ATGAAAAATAAAAATAAA
Found at i:22143631 original size:46 final size:46
Alignment explanation
Indices: 22143557--22143644 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
22143547 TTTGTAATAT
** * *
22143557 TAGTTATGCACTTAGACGATGTTGTAGTTATCATGTGGTGTAATGC
1 TAGTTATGCACTTAGAAAATATTATAGTTATCATGTGGTGTAATGC
*
22143603 TAGTTATGCACTTGGAAAATATTATAGTTATCATGTGGTGTA
1 TAGTTATGCACTTAGAAAATATTATAGTTATCATGTGGTGTA
22143645 CAACTAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (46 bp):
TAGTTATGCACTTAGAAAATATTATAGTTATCATGTGGTGTAATGC
Found at i:22144038 original size:13 final size:14
Alignment explanation
Indices: 22144016--22144048 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
22144006 AGTAATTTAT
22144016 TTTTCAG-AAATCA
1 TTTTCAGAAAATCA
*
22144029 TTTTCCGAAAATCA
1 TTTTCAGAAAATCA
22144043 TTTTCA
1 TTTTCA
22144049 ATCAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.42
Consensus pattern (14 bp):
TTTTCAGAAAATCA
Found at i:22144160 original size:19 final size:20
Alignment explanation
Indices: 22144138--22144186 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
22144128 TTTTCTATTA
* *
22144138 TTTTCTTTTTTTTTC-CTCC
1 TTTTCTTTTTTCTTCTATCC
22144157 TTTTCTTTTTTCTTCTATCC
1 TTTTCTTTTTTCTTCTATCC
*
22144177 TTTGCTTTTT
1 TTTTCTTTTT
22144187 CAACATGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTTTCTTCTATCC
Found at i:22145444 original size:11 final size:11
Alignment explanation
Indices: 22145428--22145453 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22145418 TATTAAATTT
22145428 TTTTTTTATAA
1 TTTTTTTATAA
22145439 TTTTTTTATAA
1 TTTTTTTATAA
22145450 TTTT
1 TTTT
22145454 AATGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:22157946 original size:20 final size:21
Alignment explanation
Indices: 22157921--22157961 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
22157911 TATATAATAT
22157921 TAAATATAAT-TGATAAAAAA
1 TAAATATAATATGATAAAAAA
22157941 TAAATATAATATGATAAAAAA
1 TAAATATAATATGATAAAAAA
22157962 AAGTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
TAAATATAATATGATAAAAAA
Found at i:22161091 original size:6 final size:6
Alignment explanation
Indices: 22161080--22161120 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
22161070 ATGACATTGC
22161080 ATGTGG ATGTGG ATGTGG ATGTGG ATGTGG ATGTGG ATGTG
1 ATGTGG ATGTGG ATGTGG ATGTGG ATGTGG ATGTGG ATGTG
22161121 ATGGATAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.00, G:0.49, T:0.34
Consensus pattern (6 bp):
ATGTGG
Found at i:22163443 original size:39 final size:39
Alignment explanation
Indices: 22163392--22163504 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
22163382 AGATAGCTTT
22163392 GCAGTGTTTACAGTGTCACTGCCAGTTCAGTATATCATC
1 GCAGTGTTTACAGTGTCACTGCCAGTTCAGTATATCATC
* * *
22163431 GCAGTGTTTACAGTGTCACTGTCAGTTCGGTATATCATT
1 GCAGTGTTTACAGTGTCACTGCCAGTTCAGTATATCATC
* **
22163470 GCAGTGTTTATAGTGTCACAACCAGTTCAGTATAT
1 GCAGTGTTTACAGTGTCACTGCCAGTTCAGTATAT
22163505 TTTCGACGTG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (39 bp):
GCAGTGTTTACAGTGTCACTGCCAGTTCAGTATATCATC
Found at i:22168883 original size:90 final size:89
Alignment explanation
Indices: 22168766--22168939 Score: 201
Period size: 90 Copynumber: 1.9 Consensus size: 89
22168756 ATTTGATTAT
* * *
22168766 TTTTTTTTAATTTGATGCCTAAATTTTTTTGG-TCTAAATTGATA-CTCAAACTTGACACCGTTT
1 TTTTTTTTAAGTTGATACCTAAA-TTTTTGGGATCTAAATTGATACCT-AAACTTGAC-CCGTTT
*
22168829 -CCTAATTTGGTACCTAAACTTGACAC
63 GCCTAATTTGATACCTAAACTTGACAC
* * * * * *
22168855 TTTTTTTTAAGTTGGTACTTAAACTTTTTGGGATCTAATTTGATACCTGAACTTGACTCTTTTGC
1 TTTTTTTTAAGTTGATACCTAAA-TTTTTGGGATCTAAATTGATACCTAAACTTGACCCGTTTGC
22168920 CTAATTTGATACCTAAACTT
65 CTAATTTGATACCTAAACTT
22168940 TTTTTAATAT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
89 30 0.42
90 39 0.55
91 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (89 bp):
TTTTTTTTAAGTTGATACCTAAATTTTTGGGATCTAAATTGATACCTAAACTTGACCCGTTTGCC
TAATTTGATACCTAAACTTGACAC
Found at i:22168937 original size:59 final size:59
Alignment explanation
Indices: 22168830--22168942 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
22168820 ACACCGTTTC
* *** * *
22168830 CTAATTTGGTACCTAAACTTGACACTTTTTTTTAAGTTGGTACTTAAACTTTTTGGGAT
1 CTAATTTGATACCTAAACTTGACACTTTTGCCTAAGTTGATACCTAAACTTTTTGGGAT
* * *
22168889 CTAATTTGATACCTGAACTTGACTCTTTTGCCTAATTTGATACCTAAACTTTTT
1 CTAATTTGATACCTAAACTTGACACTTTTGCCTAAGTTGATACCTAAACTTTTT
22168943 TTAATATTAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (59 bp):
CTAATTTGATACCTAAACTTGACACTTTTGCCTAAGTTGATACCTAAACTTTTTGGGAT
Found at i:22171477 original size:11 final size:11
Alignment explanation
Indices: 22171461--22171535 Score: 73
Period size: 11 Copynumber: 6.9 Consensus size: 11
22171451 TAAAAACAGT
22171461 AAAAACAACAC
1 AAAAACAACAC
** *
22171472 AAAAACAGTAA
1 AAAAACAACAC
22171483 AAAAACAACAC
1 AAAAACAACAC
* *
22171494 CAAAACAATA-
1 AAAAACAACAC
22171504 AAAAACAACAC
1 AAAAACAACAC
*
22171515 AAAAAAAATCA-
1 AAAAACAA-CAC
22171526 AAAAACAACA
1 AAAAACAACA
22171536 ACCAAAATAG
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
10 10 0.20
11 38 0.76
12 2 0.04
ACGTcount: A:0.75, C:0.20, G:0.01, T:0.04
Consensus pattern (11 bp):
AAAAACAACAC
Found at i:22171486 original size:22 final size:21
Alignment explanation
Indices: 22171452--22171552 Score: 114
Period size: 22 Copynumber: 4.7 Consensus size: 21
22171442 AAATAGTAAT
22171452 AAAAACAGT-AAAAACAACAC
1 AAAAACAGTAAAAAACAACAC
22171472 AAAAACAGTAAAAAAACAACAC
1 AAAAACAGT-AAAAAACAACAC
* *
22171494 CAAAACAATAAAAAACAACAC
1 AAAAACAGTAAAAAACAACAC
* *
22171515 AAAAAAAATCAAAAAACAACAAC
1 AAAAACAGT-AAAAAACAAC-AC
* *
22171538 CAAAATAGTAAAAAA
1 AAAAACAGTAAAAAA
22171553 AGCACCAAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
20 9 0.13
21 19 0.27
22 34 0.49
23 8 0.11
ACGTcount: A:0.73, C:0.18, G:0.03, T:0.06
Consensus pattern (21 bp):
AAAAACAGTAAAAAACAACAC
Found at i:22171509 original size:43 final size:44
Alignment explanation
Indices: 22171453--22171552 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 44
22171443 AATAGTAATA
* *
22171453 AAAACAGT-AAAAACAACACAAAAACAGTAAAAAAACAAC-ACC
1 AAAACAGTAAAAAACAACACAAAAAAAATAAAAAAACAACAACC
* *
22171495 AAAACAATAAAAAACAACACAAAAAAAATCAAAAAACAACAACC
1 AAAACAGTAAAAAACAACACAAAAAAAATAAAAAAACAACAACC
*
22171539 AAAATAGTAAAAAA
1 AAAACAGTAAAAAA
22171553 AGCACCAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 7 0.14
43 28 0.56
44 15 0.30
ACGTcount: A:0.73, C:0.18, G:0.03, T:0.06
Consensus pattern (44 bp):
AAAACAGTAAAAAACAACACAAAAAAAATAAAAAAACAACAACC
Found at i:22171551 original size:32 final size:32
Alignment explanation
Indices: 22171429--22171568 Score: 115
Period size: 32 Copynumber: 4.3 Consensus size: 32
22171419 AACTAACAGT
* * *
22171429 AAAACAACAACAAAAATAGTAATAAAAACAGTA
1 AAAACAACAACAAAAACAGTAAAAAAAACA-CA
*
22171462 AAAACAAC-ACAAAAACAGTAAAAAAACAACACC
1 AAAACAACAACAAAAACAGT-AAAAAA-AACACA
* * *
22171495 AAAACAATAAAAAACAACA-CAAAAAAAATCA-A
1 AAAACAACAACAAA-AACAGTAAAAAAAA-CACA
* * * *
22171527 AAAACAACAACCAAAATAGTAAAAAAAGCACC
1 AAAACAACAACAAAAACAGTAAAAAAAACACA
22171559 AAAACAACAA
1 AAAACAACAA
22171569 TATAATTTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
31 5 0.06
32 40 0.47
33 28 0.33
34 8 0.09
35 4 0.05
ACGTcount: A:0.71, C:0.19, G:0.04, T:0.06
Consensus pattern (32 bp):
AAAACAACAACAAAAACAGTAAAAAAAACACA
Found at i:22172120 original size:24 final size:24
Alignment explanation
Indices: 22172058--22172121 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 24
22172048 TAATTTTTTA
*
22172058 TAAATAA-ATATATTATTTTAGGCTT
1 TAAATAATATA-ATT-TTTTAGGATT
* ** *
22172083 TTAATTTTAGAATTTTTTAGGATT
1 TAAATAATATAATTTTTTAGGATT
22172107 TAAATAATATAATTT
1 TAAATAATATAATTT
22172122 GTATGTTATA
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
24 20 0.69
25 7 0.24
26 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.52
Consensus pattern (24 bp):
TAAATAATATAATTTTTTAGGATT
Found at i:22173222 original size:34 final size:33
Alignment explanation
Indices: 22173175--22173238 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
22173165 AAATAATTTA
*
22173175 AAAATTATAAAAAATATTTTAAAAATAAAAAATC
1 AAAATTATAAAAAATA-TTAAAAAATAAAAAATC
22173209 AAAATTCAT-AAAAATATTAAAAAATAAAAA
1 AAAATT-ATAAAAAATATTAAAAAATAAAAA
22173239 TCATGAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 13 0.46
34 13 0.46
35 2 0.07
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (33 bp):
AAAATTATAAAAAATATTAAAAAATAAAAAATC
Found at i:22173917 original size:13 final size:13
Alignment explanation
Indices: 22173899--22173923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22173889 AAATGTGGGG
22173899 ATTTTTTAAATTA
1 ATTTTTTAAATTA
22173912 ATTTTTTAAATT
1 ATTTTTTAAATT
22173924 GTAAAAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTTTAAATTA
Found at i:22174119 original size:12 final size:12
Alignment explanation
Indices: 22174104--22174133 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22174094 CATTTCTCTC
22174104 TCTCTTTCTCCT
1 TCTCTTTCTCCT
*
22174116 TCTCCTTCTCCT
1 TCTCTTTCTCCT
22174128 TCTCTT
1 TCTCTT
22174134 CATATAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (12 bp):
TCTCTTTCTCCT
Found at i:22174532 original size:2 final size:2
Alignment explanation
Indices: 22174527--22174565 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
22174517 TATATCATAC
*
22174527 AG AG AG AC ACG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG A-G AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22174566 TGTGTGTGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 33 0.97
3 1 0.03
ACGTcount: A:0.49, C:0.05, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22174900 original size:3 final size:3
Alignment explanation
Indices: 22174892--22174918 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
22174882 TTGCAACTCA
22174892 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
22174919 GGCATCCGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:22189651 original size:14 final size:14
Alignment explanation
Indices: 22189632--22189661 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22189622 TTGACCAAGT
22189632 ATAAATAATTAATA
1 ATAAATAATTAATA
*
22189646 ATAAATAATTTATA
1 ATAAATAATTAATA
22189660 AT
1 AT
22189662 TTAGTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAAATAATTAATA
Found at i:22189842 original size:18 final size:20
Alignment explanation
Indices: 22189802--22189847 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
22189792 AATATGTAAT
*
22189802 TATATTTTAAAACTAAAATA
1 TATATTCTAAAACTAAAATA
*
22189822 TATATTCTAAAATTAAAATA
1 TATATTCTAAAACTAAAATA
*
22189842 TTTATT
1 TATATT
22189848 ATATAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
TATATTCTAAAACTAAAATA
Found at i:22194797 original size:5 final size:6
Alignment explanation
Indices: 22194787--22194811 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22194777 AAAAACTACT
22194787 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
22194812 CCAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:22194856 original size:21 final size:22
Alignment explanation
Indices: 22194815--22194862 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
22194805 TAAAAATCCA
*
22194815 AAAAAATCATAAAACTTTTTTC
1 AAAAAATCATAAAACTATTTTC
* *
22194837 AAAAAATCAT-AATCTATTTTT
1 AAAAAATCATAAAACTATTTTC
22194858 AAAAA
1 AAAAA
22194863 TTATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAAAATCATAAAACTATTTTC
Found at i:22194856 original size:22 final size:21
Alignment explanation
Indices: 22194815--22194862 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
22194805 TAAAAATCCA
22194815 AAAAAATCATAAAACTTTTTT
1 AAAAAATCATAAAACTTTTTT
*
22194836 CAAAAAATCAT-AATCTATTTTT
1 -AAAAAATCATAAAACT-TTTTT
22194858 AAAAA
1 AAAAA
22194863 TTATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAAATCATAAAACTTTTTT
Found at i:22196617 original size:29 final size:28
Alignment explanation
Indices: 22196585--22196764 Score: 137
Period size: 30 Copynumber: 6.2 Consensus size: 28
22196575 GCTCGGCTGT
22196585 AAAATGGTGATTTTTGAAAGTTCGGGGGC
1 AAAAT-GTGATTTTTGAAAGTTCGGGGGC
* * * **
22196614 AAAAATATAATTTTTGAAAAGTTTGGGGTA
1 -AAAATGTGATTTTTG-AAAGTTCGGGGGC
** * *
22196644 AAAATGTGA-TTTTGGGAGTACGGGGGTA
1 AAAATGTGATTTTTGAAAGTTCGGGGG-C
* * *
22196672 AAAATGTGATTTTTGGAAGTATGGGGGGTG
1 AAAATGTGATTTTTGAAAGT-TCGGGGG-C
* * *
22196702 AAAATGTGATTTTTGGAGGTTTGGGGGC
1 AAAATGTGATTTTTGAAAGTTCGGGGGC
*
22196730 AAAATGTGATTTTTGAGAAGTTCGAGGGTC
1 AAAATGTGATTTTTGA-AAGTTCG-GGGGC
22196760 AAAAT
1 AAAAT
22196765 ATAACTTTGG
Statistics
Matches: 121, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
27 7 0.06
28 30 0.25
29 35 0.29
30 49 0.40
ACGTcount: A:0.31, C:0.03, G:0.33, T:0.33
Consensus pattern (28 bp):
AAAATGTGATTTTTGAAAGTTCGGGGGC
Found at i:22196645 original size:58 final size:59
Alignment explanation
Indices: 22196585--22196751 Score: 189
Period size: 58 Copynumber: 2.9 Consensus size: 59
22196575 GCTCGGCTGT
* * * * *
22196585 AAAATGGTGATTTTTGAAAGTTCGGGGGCAAAAATATAATTTTTGAAAAGTT-TGGGGTA
1 AAAAT-GTGATTTTTGGAAGTTCGGGGGCAAAAATGTGATTTTTGAGAAGTTGGGGGGTA
* * * *
22196644 AAAATGTGA-TTTTGGGAGTACGGGGGTAAAAATGTGATTTTTG-GAAGTATGGGGGGTG
1 AAAATGTGATTTTTGGAAGTTCGGGGGCAAAAATGTGATTTTTGAGAAGT-TGGGGGGTA
* *
22196702 AAAATGTGATTTTTGGAGGTTTGGGGGC-AAAATGTGATTTTTGAGAAGTT
1 AAAATGTGATTTTTGGAAGTTCGGGGGCAAAAATGTGATTTTTGAGAAGTT
22196752 CGAGGGTCAA
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
56 4 0.04
57 29 0.32
58 34 0.38
59 23 0.26
ACGTcount: A:0.31, C:0.02, G:0.33, T:0.34
Consensus pattern (59 bp):
AAAATGTGATTTTTGGAAGTTCGGGGGCAAAAATGTGATTTTTGAGAAGTTGGGGGGTA
Found at i:22196706 original size:30 final size:30
Alignment explanation
Indices: 22196585--22196764 Score: 151
Period size: 29 Copynumber: 6.2 Consensus size: 30
22196575 GCTCGGCTGT
* *
22196585 AAAATGGTGATTTTTGAAAGT-TCGGGGGCA
1 AAAAT-GTGATTTTTGGAAGTATCGGGGGTA
* * * *
22196615 AAAATATAATTTTTGAAAAGT-T-TGGGGTA
1 AAAATGTGATTTTTG-GAAGTATCGGGGGTA
*
22196644 AAAATGTGA-TTTTGGGAGTA-CGGGGGTA
1 AAAATGTGATTTTTGGAAGTATCGGGGGTA
* *
22196672 AAAATGTGATTTTTGGAAGTATGGGGGGTG
1 AAAATGTGATTTTTGGAAGTATCGGGGGTA
* * *
22196702 AAAATGTGATTTTTGGAGGT-TTGGGGG-C
1 AAAATGTGATTTTTGGAAGTATCGGGGGTA
* *
22196730 AAAATGTGATTTTTGAGAAGT-TCGAGGGTC
1 AAAATGTGATTTTTG-GAAGTATCGGGGGTA
22196760 AAAAT
1 AAAAT
22196765 ATAACTTTGG
Statistics
Matches: 125, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.02
28 35 0.28
29 45 0.36
30 42 0.34
ACGTcount: A:0.31, C:0.03, G:0.33, T:0.33
Consensus pattern (30 bp):
AAAATGTGATTTTTGGAAGTATCGGGGGTA
Found at i:22196863 original size:30 final size:29
Alignment explanation
Indices: 22196615--22196876 Score: 192
Period size: 30 Copynumber: 8.9 Consensus size: 29
22196605 TTCGGGGGCA
* * *
22196615 AAAATATAATTTTTGAAAAGTTTG-GGGTA
1 AAAATGTAATTTTTG-GAAGTTTGAGGGTC
* * ** * *
22196644 AAAATGTGA-TTTTGGGAGTACGGGGGTA
1 AAAATGTAATTTTTGGAAGTTTGAGGGTC
* * * *
22196672 AAAATGTGATTTTTGGAAGTATGGGGGGTG
1 AAAATGTAATTTTTGGAAGT-TTGAGGGTC
* * *
22196702 AAAATGTGATTTTTGGAGGTTTG-GGGGC
1 AAAATGTAATTTTTGGAAGTTTGAGGGTC
* *
22196730 AAAATGTGATTTTTGAGAAGTTCGAGGGTC
1 AAAATGTAATTTTTG-GAAGTTTGAGGGTC
* * *
22196760 AAAATATAACTTTGGAGAAGTTT-AGGGGTC
1 AAAATGTAATTTTTG-GAAGTTTGA-GGGTC
* * * *
22196790 AAAATGTATTTTTTGGAAATTTTAAGGGTT
1 AAAATGTAATTTTTGG-AAGTTTGAGGGTC
22196820 AAAATGTAATTTTTGAGAAGTTTGAGGGTC
1 AAAATGTAATTTTTG-GAAGTTTGAGGGTC
22196850 AAAATGTAATTTTTGGATAGTTT-AGGG
1 AAAATGTAATTTTTGGA-AGTTTGAGGG
22196877 ATCTTCTAGG
Statistics
Matches: 191, Mismatches: 32, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
27 4 0.02
28 37 0.19
29 32 0.17
30 116 0.61
31 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTTGAGGGTC
Found at i:22197165 original size:18 final size:19
Alignment explanation
Indices: 22197124--22197166 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
22197114 TGAAACTCAA
*
22197124 ATAAAATTAATGGGAAAAT
1 ATAAAATTAATGGAAAAAT
* *
22197143 TTAAAATTAAT-TAAAAAT
1 ATAAAATTAATGGAAAAAT
22197161 ATAAAA
1 ATAAAA
22197167 AGGATGGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
ATAAAATTAATGGAAAAAT
Found at i:22198659 original size:6 final size:6
Alignment explanation
Indices: 22198650--22198720 Score: 60
Period size: 6 Copynumber: 12.3 Consensus size: 6
22198640 GAACATTATT
* * *
22198650 AATTTA AATTTA GAA--TA AATTTA AACTTA AA-TTA AATGTA AACTTA
1 AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* *
22198696 AACTTA AA-ATA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
22198721 AACAAATTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
4 2 0.04
5 11 0.20
6 39 0.72
7 2 0.04
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (6 bp):
AATTTA
Found at i:22198709 original size:23 final size:23
Alignment explanation
Indices: 22198665--22198720 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
22198655 AAATTTAGAA
*
22198665 TAAATTTAAACTTAAATTAAATG
1 TAAATTTAAACTTAAAATAAATG
* *
22198688 TAAACTTAAACTTAAAATAAATT
1 TAAATTTAAACTTAAAATAAATG
22198711 TAAATTTAAA
1 TAAATTTAAA
22198721 AACAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (23 bp):
TAAATTTAAACTTAAAATAAATG
Found at i:22198751 original size:18 final size:17
Alignment explanation
Indices: 22198650--22198749 Score: 83
Period size: 17 Copynumber: 5.5 Consensus size: 17
22198640 GAACATTATT
* *
22198650 AATTTAAATTTAGAATA
1 AATTTAAACTTAAAATA
22198667 AATTTAAACTTAAATTAAATGTA
1 AATTTAAACTT--A--AAA--TA
*
22198690 AACTTAAACTTAAAATA
1 AATTTAAACTTAAAATA
* *
22198707 AATTTAAATTTAAAAACA
1 AATTTAAACTT-AAAATA
22198725 AATTTAAACTTAAAATA
1 AATTTAAACTTAAAATA
*
22198742 AATCTAAA
1 AATTTAAA
22198750 ACAAAATGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
17 33 0.49
18 15 0.22
19 4 0.06
21 3 0.04
23 12 0.18
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (17 bp):
AATTTAAACTTAAAATA
Found at i:22198756 original size:29 final size:29
Alignment explanation
Indices: 22198666--22198756 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
22198656 AATTTAGAAT
* *
22198666 AAATTTAAACTTAAATTAAATGT-AAACTT
1 AAATTTAAACTTAAATTAAATCTAAAAC-A
* * *
22198695 AAACTTAAA-ATAAATTTAAATTTAAAA-A
1 AAATTTAAACTTAAA-TTAAATCTAAAACA
*
22198723 CAAATTTAAACTTAAAATAAATCTAAAACA
1 -AAATTTAAACTTAAATTAAATCTAAAACA
22198753 AAAT
1 AAAT
22198757 GGGTTTAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
28 4 0.08
29 37 0.76
30 8 0.16
ACGTcount: A:0.59, C:0.08, G:0.01, T:0.32
Consensus pattern (29 bp):
AAATTTAAACTTAAATTAAATCTAAAACA
Found at i:22199268 original size:85 final size:85
Alignment explanation
Indices: 22199152--22199317 Score: 242
Period size: 85 Copynumber: 2.0 Consensus size: 85
22199142 AGAAAGATGG
* * * * * **
22199152 ATTTGGTTCACTTCTCTGCGTCTCGTCAGGAAGGTGACCACTTTATTGGTTCGACCTTTTTCTCA
1 ATTTGGTTCACTTCTCTGCATCTCATCAGGAAGCTAACCACTTTATTGCTTCGACCTACTTCTCA
*
22199217 GTATCTCATCCGGAAGACGA
66 GTATCTCATCAGGAAGACGA
* *
22199237 ATTTGGTTCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCA
1 ATTTGGTTCACTTCTCTGCATCTCATCAGGAAGCTAACCACTTTATTGCTTCGACCTACTTCTCA
22199302 GTATCTCATCAGGAAG
66 GTATCTCATCAGGAAG
22199318 TTGGAGTTCG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (85 bp):
ATTTGGTTCACTTCTCTGCATCTCATCAGGAAGCTAACCACTTTATTGCTTCGACCTACTTCTCA
GTATCTCATCAGGAAGACGA
Found at i:22199593 original size:209 final size:208
Alignment explanation
Indices: 22199211--22199915 Score: 941
Period size: 209 Copynumber: 3.4 Consensus size: 208
22199201 TTCGACCTTT
* ** * *
22199211 TTCTCAGTATCTCATCCGGAAGACGAATTTGGTTCACTTCTCTGTATCTCATCAGGAAG-CTAAC
1 TTCTCTGTATCTCATAAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGAC-AAC
* * *
22199275 CATTTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGTTGGAGTTCGAAGTTTTGCTCA
65 CATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGTTGGGGTTCGAAG-TTTGCTCA
* *
22199340 CATTGAGCTTTGTTTCATTGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCATCA
129 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCA
22199405 CTTGTTTCAATCCAC
194 CTTGTTTCAATCCAC
* * * *
22199420 TTCTCTATACCTCATTAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGACC
1 TTCTCTGTATCTCATAAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACC
*
22199485 ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGCTGGGGTTCGAAGTTTCGCTCAC
66 ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGTTGGGGTTCGAAGTTT-GCTCAC
* * * * *
22199550 ATTAAGCTTTGTTTCATTGATTTAGTCTACTTCTCAATATCTCATCAGGAAGATGGCCGCATCAC
130 ATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCAC
22199615 TTGTTTCAATCCAC
195 TTGTTTCAATCCAC
* * * *
22199629 TTCTCTGTATCTCATCAA-GAAGACGGATTTGGGCCACTTCTCTGTATCTTATCAGGAAGACGAT
1 TTCTCTGTATCTCAT-AAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAAC
*
22199693 CATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGTTGTGGTTCGAAGATTTGCTCA
65 CATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGTTGGGGTTCGAAG-TTTGCTCA
* * * ** *
22199758 CTTTGAGCCTGGTTT-ATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGATTGCCTC-
129 CATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCA
* ** *
22199821 GTTGTTTTGATTCAC
194 CTTGTTTCAATCCAC
* * * * * * **
22199836 TTCTTTGTATCTCATAAGGAAGACAGATCTGGTTCACTTTTCTGTATCTCATCAAGAAGGTAACC
1 TTCTCTGTATCTCATAAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACC
*
22199901 ACTTTATTGCTTCGA
66 ATTTTATTGCTTCGA
22199916 ATGACTGTAA
Statistics
Matches: 436, Mismatches: 55, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
206 2 0.00
207 75 0.17
208 44 0.10
209 310 0.71
210 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (208 bp):
TTCTCTGTATCTCATAAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACAACC
ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGTTGGGGTTCGAAGTTTGCTCACA
TTGAGCTTTGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCATCACT
TGTTTCAATCCAC
Found at i:22199978 original size:39 final size:39
Alignment explanation
Indices: 22199924--22200071 Score: 233
Period size: 39 Copynumber: 3.8 Consensus size: 39
22199914 GAATGACTGT
*
22199924 AATCTGCCTCATGATCGGGATAAGAGATTGGATGGCTGC
1 AATCTGCCCCATGATCGGGATAAGAGATTGGATGGCTGC
* *
22199963 AATCTACCCCATGATCGGGATAAGAGATTGGATGACTGC
1 AATCTGCCCCATGATCGGGATAAGAGATTGGATGGCTGC
* *
22200002 AATCTGCACCATGATCGGGGTAAGAGATTGGATGGCTGC
1 AATCTGCCCCATGATCGGGATAAGAGATTGGATGGCTGC
* *
22200041 AATCTGCCTCATGATCGGGGTAAGAGATTGG
1 AATCTGCCCCATGATCGGGATAAGAGATTGG
22200072 CTGATGGTGA
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (39 bp):
AATCTGCCCCATGATCGGGATAAGAGATTGGATGGCTGC
Found at i:22200085 original size:39 final size:39
Alignment explanation
Indices: 22200016--22200302 Score: 217
Period size: 39 Copynumber: 7.4 Consensus size: 39
22200006 TGCACCATGA
* * *
22200016 TCGGGGTAAGAGATT-G--GATGGCTGCAATCTGCCTCATGA
1 TCGGGGTAAGAGATTGGCTGATGG-TG--ATCTGCCCCAGGC
22200055 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGG-
1 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCC-AGGC
* * **** *** * *
22200094 TCGAGGTAAAAGATCAAATGACT-ACAATTTGCCCTAGGC
1 TCGGGGTAAGAGATTGGCTGA-TGGTGATCTGCCCCAGGC
*
22200133 TCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGC
1 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGC
* *
22200172 TCGGGGTAAGAGATTGGCTAATGGTGATCTGCCCCAAGC
1 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGC
* * * * * * * *
22200211 TCAGGGTAAAAGATCGGATGACT-GTAATTTGTCCTAGGC
1 TCGGGGTAAGAGATTGGCTGA-TGGTGATCTGCCCCAGGC
* * *
22200250 TTGGGGTAAGAGATTGGCTGATGGTAATCTGCCTCAGGC
1 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGC
*
22200289 TCGGGTTAAGAGAT
1 TCGGGGTAAGAGAT
22200303 CGGAATCTTC
Statistics
Matches: 191, Mismatches: 48, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
38 5 0.03
39 174 0.91
40 5 0.03
41 2 0.01
42 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (39 bp):
TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAGGC
Found at i:22200085 original size:78 final size:76
Alignment explanation
Indices: 22199925--22200188 Score: 276
Period size: 78 Copynumber: 3.4 Consensus size: 76
22199915 AATGACTGTA
* * * *
22199925 ATCTGCCTCATGATCGGGATAAGAGATTGGATGGCTGCAATCTACCCCATGATCGGGATAAGAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCT-GCCCATGATCGGGGTAAGAGA
* **
22199990 TTGGATGACTGCA
65 TTGGCTGA-TGTG
*
22200003 ATCTGCACCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTGCCTCATGATCGGGGTAAGAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTGCC-CATGATCGGGGTAAGAGA
22200068 TTGGCTGATGGTG
65 TTGGCTGAT-GTG
* * * * *** * * * * *
22200081 ATCTGCCCCAAGGTCGAGGTAAAAGATCAAATGACTACAATTTGCCCTAGGCTCGGGGTAAGAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTGCCC-ATGATCGGGGTAAGAGA
22200146 TTGGCTGATAGTG
65 TTGGCTGAT-GTG
* *
22200159 ATCTGCCCCAGGCTCGGGGTAAGAGATTGG
1 ATCTGCCCCATGATCGGGGTAAGAGATTGG
22200189 CTAATGGTGA
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
77 4 0.03
78 150 0.97
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (76 bp):
ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCAATCTGCCCATGATCGGGGTAAGAGAT
TGGCTGATGTG
Found at i:22200137 original size:117 final size:117
Alignment explanation
Indices: 22200016--22200302 Score: 389
Period size: 117 Copynumber: 2.5 Consensus size: 117
22200006 TGCACCATGA
* * * * * *
22200016 TCGGGGTAAGAGATTGGATGGCT-GCAATCTGCCTCATGATCGGGGTAAGAGATTGGCTGATGGT
1 TCGGGGTAAGAGATTGGCT-GATAGTAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTAATGGT
*
22200080 GATCTGCCCCAAGGTC-GAGGTAAAAGATCAAATGACTACAATTTGCCCTAGGC
65 GATCTGCCCCAAGCTCAG-GGTAAAAGATCAAATGACTACAATTTGCCCTAGGC
* *
22200133 TCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTG
1 TCGGGGTAAGAGATTGGCTGATAGTAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTAATGGTG
** ** *
22200198 ATCTGCCCCAAGCTCAGGGTAAAAGATCGGATGACTGTAATTTGTCCTAGGC
66 ATCTGCCCCAAGCTCAGGGTAAAAGATCAAATGACTACAATTTGCCCTAGGC
* * *
22200250 TTGGGGTAAGAGATTGGCTGATGGTAATCTGCCTCAGGCTCGGGTTAAGAGAT
1 TCGGGGTAAGAGATTGGCTGATAGTAATCTGCCTCAGGCTCGGGGTAAGAGAT
22200303 CGGAATCTTC
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
116 2 0.01
117 146 0.98
118 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (117 bp):
TCGGGGTAAGAGATTGGCTGATAGTAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTAATGGTG
ATCTGCCCCAAGCTCAGGGTAAAAGATCAAATGACTACAATTTGCCCTAGGC
Found at i:22200205 original size:78 final size:77
Alignment explanation
Indices: 22199977--22200302 Score: 220
Period size: 78 Copynumber: 4.2 Consensus size: 77
22199967 TACCCCATGA
* * ** * * *
22199977 TCGGGATAAGAGATTGGATGACTGCAATCTGCACCATGATCGGGGTAAGAGATTGG---ATGGCT
1 TCGGGGTAAGAGATTGGCTGA-TGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGG-T
* *
22200039 GCAATCTG-CCTCATGA
64 --AATCTGCCCT-AGGC
* * * *
22200055 TCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGG-TCGAGGTAAAAGA-T--CAAATGAC
1 TCGGGGTAAGAGATTGGCTGAT-GTGATCTGCCCC-AGGCTCGGGGTAAGAGATTGGCTAATG-G
*
22200116 TACAATTTGCCCTAGGC
63 T--AATCTGCCCTAGGC
*
22200133 TCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTG
1 TCGGGGTAAGAGATTGGCTGAT-GTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTA
* *
22200198 ATCTGCCCCAAGC
65 ATCTGCCCTAGGC
* * * * * * * * * *
22200211 TCAGGGTAAAAGATCGGATGACTGTAATTTGTCCTAGGCTTGGGGTAAGAGATTGGCTGATGGTA
1 TCGGGGTAAGAGATTGGCTGA-TGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTA
22200276 ATCTG-CCTCAGGC
65 ATCTGCCCT-AGGC
*
22200289 TCGGGTTAAGAGAT
1 TCGGGGTAAGAGAT
22200303 CGGAATCTTC
Statistics
Matches: 197, Mismatches: 38, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
77 7 0.04
78 177 0.90
79 7 0.04
80 1 0.01
81 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (77 bp):
TCGGGGTAAGAGATTGGCTGATGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTAA
TCTGCCCTAGGC
Done.