Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 90 of 120
Found at i:26002459 original size:11 final size:11
Alignment explanation
Indices: 26002423--26002461 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26002413 GAATATGTTG
26002423 ACGAACGTTAA
1 ACGAACGTTAA
* *
26002434 ACAAACATATAA
1 ACGAACGT-TAA
26002446 ACGAACGTTAA
1 ACGAACGTTAA
26002457 ACGAA
1 ACGAA
26002462 AATGTTCACG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.54, C:0.18, G:0.13, T:0.15
Consensus pattern (11 bp):
ACGAACGTTAA
Found at i:26002484 original size:12 final size:12
Alignment explanation
Indices: 26002401--26002488 Score: 63
Period size: 12 Copynumber: 7.5 Consensus size: 12
26002391 AAATGTTCAT
26002401 GAACATATAAAC
1 GAACATATAAAC
* * **
26002413 GAATATGTTGAC
1 GAACATATAAAC
*
26002425 GAACGT-TAAAC
1 GAACATATAAAC
*
26002436 AAACATATAAAC
1 GAACATATAAAC
*
26002448 GAACGT-TAAAC
1 GAACATATAAAC
* * **
26002459 GAAAATGTTCAC
1 GAACATATAAAC
26002471 GAACATATAAAC
1 GAACATATAAAC
26002483 GAACAT
1 GAACAT
26002489 GTTCACGAAC
Statistics
Matches: 54, Mismatches: 20, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
11 16 0.30
12 38 0.70
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (12 bp):
GAACATATAAAC
Found at i:26002500 original size:47 final size:46
Alignment explanation
Indices: 26002376--26002504 Score: 150
Period size: 47 Copynumber: 2.8 Consensus size: 46
26002366 CGAACGTTAA
* * * * *
26002376 ACGAACGTTAAACGAAAATGTTCATGAACATATAAACGAATATGTTG
1 ACGAACGTTAAACGAACATGTTCACGAACGT-TAAACGAAAATGTTC
* * **
26002423 ACGAACGTTAAACAAACATATAAACGAACGTTAAACGAAAATGTTC
1 ACGAACGTTAAACGAACATGTTCACGAACGTTAAACGAAAATGTTC
*
26002469 ACGAACATATAAACGAACATGTTCACGAACGTTAAA
1 ACGAACGT-TAAACGAACATGTTCACGAACGTTAAA
26002505 GGAACGATCA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
46 20 0.30
47 47 0.70
ACGTcount: A:0.47, C:0.16, G:0.15, T:0.22
Consensus pattern (46 bp):
ACGAACGTTAAACGAACATGTTCACGAACGTTAAACGAAAATGTTC
Found at i:26007162 original size:32 final size:32
Alignment explanation
Indices: 26007119--26007209 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 32
26007109 TATAATTACA
*
26007119 TCAAATATAAAAAAATCCAAACTTTAAAAAG-C
1 TCAAATCTAAAAAAATCCAAAC-TTAAAAAGAC
* * *
26007151 TCAAATCTAAAAAAATTC-AACTTAATAAGAT
1 TCAAATCTAAAAAAATCCAAACTTAAAAAGAC
26007182 TCAAA-CTTAAAAAAATCCAAACTTAAAA
1 TCAAATC-TAAAAAAATCCAAACTTAAAA
26007210 TAACCCGATT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
30 8 0.16
31 18 0.36
32 24 0.48
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.24
Consensus pattern (32 bp):
TCAAATCTAAAAAAATCCAAACTTAAAAAGAC
Found at i:26007364 original size:3 final size:3
Alignment explanation
Indices: 26007358--26007399 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
26007348 ATAATAATAA
26007358 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26007400 TTAACCACGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26007522 original size:6 final size:6
Alignment explanation
Indices: 26007511--26007548 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
26007501 AAATCAACAT
26007511 CTCATA CTCATA CTCATA CTCATA CTCATA CTCATA CT
1 CTCATA CTCATA CTCATA CTCATA CTCATA CTCATA CT
26007549 TAGTATAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (6 bp):
CTCATA
Found at i:26016487 original size:3 final size:3
Alignment explanation
Indices: 26016479--26016518 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
26016469 CAATCACATG
*
26016479 ATC ATC ATC ACC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
26016519 AGAGAGCAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:26019308 original size:2 final size:2
Alignment explanation
Indices: 26019301--26019330 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
26019291 TGAAGATGGC
*
26019301 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26019331 CTTTTTTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:26020199 original size:18 final size:19
Alignment explanation
Indices: 26020166--26020203 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26020156 TAAATGTGCA
*
26020166 TTAAAAAATTCTAAAGATT
1 TTAAAAAATTCAAAAGATT
26020185 TTAAAAAATT-AAAAGATT
1 TTAAAAAATTCAAAAGATT
26020203 T
1 T
26020204 GTTTCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (19 bp):
TTAAAAAATTCAAAAGATT
Found at i:26020274 original size:34 final size:34
Alignment explanation
Indices: 26020210--26020276 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
26020200 ATTTGTTTCT
* *
26020210 TATTTTTAATAAAAATCCTAAAATTTTTAAAAAC
1 TATTTTTAATAAAAATCCTAAAAGTATTAAAAAC
**
26020244 TATTTTTTTTAAAAATCC-AAGAAGTATTAAAAA
1 TATTTTTAATAAAAATCCTAA-AAGTATTAAAAA
26020277 TAAAAAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 2 0.07
34 26 0.93
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (34 bp):
TATTTTTAATAAAAATCCTAAAAGTATTAAAAAC
Found at i:26022244 original size:31 final size:30
Alignment explanation
Indices: 26022206--26022288 Score: 105
Period size: 31 Copynumber: 2.8 Consensus size: 30
26022196 GTCTTTAAAG
**
26022206 TTTATCAGGTACTATGTACCTGTGTTTATA
1 TTTATCAGGTACTATGTACCTGTGACTATA
* *
26022236 TTTTATCAGGTACTGTGTACCAGTGACTATA
1 -TTTATCAGGTACTATGTACCTGTGACTATA
*
26022267 -TTATCAGGTACTTTGTACCTGT
1 TTTATCAGGTACTATGTACCTGT
26022289 ATTCATGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 20 0.43
31 26 0.57
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (30 bp):
TTTATCAGGTACTATGTACCTGTGACTATA
Found at i:26034308 original size:14 final size:14
Alignment explanation
Indices: 26034289--26034328 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
26034279 GTACCCAAAC
26034289 AATAACAATAATAT
1 AATAACAATAATAT
26034303 AATAACAA-AATGAT
1 AATAACAATAAT-AT
26034317 AATAA-AATAATA
1 AATAACAATAATA
26034329 GCAAAACAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.25
Consensus pattern (14 bp):
AATAACAATAATAT
Found at i:26035657 original size:364 final size:364
Alignment explanation
Indices: 26034988--26035718 Score: 1462
Period size: 364 Copynumber: 2.0 Consensus size: 364
26034978 TTTTAAAATG
26034988 ATCCCGTAAAGTATAAAATTTTATGAGGAAATAAAAAGGTAATTTTATGAAAAAATATTTTTTTA
1 ATCCCGTAAAGTATAAAATTTTATGAGGAAATAAAAAGGTAATTTTATGAAAAAATATTTTTTTA
26035053 AAAGCCAAAAGTTAAAAATTTTGATTTTTTAATTAGCTTAACATTTCATTTTAAAATCCATATTT
66 AAAGCCAAAAGTTAAAAATTTTGATTTTTTAATTAGCTTAACATTTCATTTTAAAATCCATATTT
26035118 GGTATAGGATGTTTAGTTTTATTATATTAAATTGAAAAATATGGAAATATTAAGATGCGTCTGAA
131 GGTATAGGATGTTTAGTTTTATTATATTAAATTGAAAAATATGGAAATATTAAGATGCGTCTGAA
26035183 TAAGTGTCTACTTCTTAAAGCATCGCAACAGATTGATCTAAAAATAAAAATAAAAATGAAAATCG
196 TAAGTGTCTACTTCTTAAAGCATCGCAACAGATTGATCTAAAAATAAAAATAAAAATGAAAATCG
26035248 TATAAGGATATTATGATATGGCCACACGAGAATAAAAGCACTCACACTGTTAGATCTGGATATAG
261 TATAAGGATATTATGATATGGCCACACGAGAATAAAAGCACTCACACTGTTAGATCTGGATATAG
26035313 TGAGTTGAAGAAATCTACTCCTTAGAGCTGCGGCTCTAA
326 TGAGTTGAAGAAATCTACTCCTTAGAGCTGCGGCTCTAA
26035352 ATCCCGTAAAGTATAAAATTTTATGAGGAAATAAAAAGGTAATTTTATGAAAAAATATTTTTTTA
1 ATCCCGTAAAGTATAAAATTTTATGAGGAAATAAAAAGGTAATTTTATGAAAAAATATTTTTTTA
26035417 AAAGCCAAAAGTTAAAAATTTTGATTTTTTAATTAGCTTAACATTTCATTTTAAAATCCATATTT
66 AAAGCCAAAAGTTAAAAATTTTGATTTTTTAATTAGCTTAACATTTCATTTTAAAATCCATATTT
26035482 GGTATAGGATGTTTAGTTTTATTATATTAAATTGAAAAATATGGAAATATTAAGATGCGTCTGAA
131 GGTATAGGATGTTTAGTTTTATTATATTAAATTGAAAAATATGGAAATATTAAGATGCGTCTGAA
26035547 TAAGTGTCTACTTCTTAAAGCATCGCAACAGATTGATCTAAAAATAAAAATAAAAATGAAAATCG
196 TAAGTGTCTACTTCTTAAAGCATCGCAACAGATTGATCTAAAAATAAAAATAAAAATGAAAATCG
26035612 TATAAGGATATTATGATATGGCCACACGAGAATAAAAGCACTCACACTGTTAGATCTGGATATAG
261 TATAAGGATATTATGATATGGCCACACGAGAATAAAAGCACTCACACTGTTAGATCTGGATATAG
26035677 TGAGTTGAAGAAATCTACTCCTTAGAGCTGCGGCTCTAA
326 TGAGTTGAAGAAATCTACTCCTTAGAGCTGCGGCTCTAA
26035716 ATC
1 ATC
26035719 TTCTTCTTCA
Statistics
Matches: 367, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
364 367 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.34
Consensus pattern (364 bp):
ATCCCGTAAAGTATAAAATTTTATGAGGAAATAAAAAGGTAATTTTATGAAAAAATATTTTTTTA
AAAGCCAAAAGTTAAAAATTTTGATTTTTTAATTAGCTTAACATTTCATTTTAAAATCCATATTT
GGTATAGGATGTTTAGTTTTATTATATTAAATTGAAAAATATGGAAATATTAAGATGCGTCTGAA
TAAGTGTCTACTTCTTAAAGCATCGCAACAGATTGATCTAAAAATAAAAATAAAAATGAAAATCG
TATAAGGATATTATGATATGGCCACACGAGAATAAAAGCACTCACACTGTTAGATCTGGATATAG
TGAGTTGAAGAAATCTACTCCTTAGAGCTGCGGCTCTAA
Found at i:26036286 original size:18 final size:16
Alignment explanation
Indices: 26036246--26036291 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 16
26036236 ATGAGAATAT
26036246 TTTTTAATTAATTAAA
1 TTTTTAATTAATTAAA
26036262 --TTTAATTAATTGAAA
1 TTTTTAATTAATT-AAA
26036277 TTTTTGAATTAATTA
1 TTTTT-AATTAATTA
26036292 CAACTGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 11 0.42
15 3 0.12
17 4 0.15
18 8 0.31
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (16 bp):
TTTTTAATTAATTAAA
Found at i:26041935 original size:18 final size:18
Alignment explanation
Indices: 26041914--26041948 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26041904 TTTCAGGTAA
26041914 AATCGAAATAATTCGGTT
1 AATCGAAATAATTCGGTT
*
26041932 AATCGAATTAATTCGGT
1 AATCGAAATAATTCGGT
26041949 CAGAAATCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (18 bp):
AATCGAAATAATTCGGTT
Found at i:26042755 original size:22 final size:20
Alignment explanation
Indices: 26042698--26042747 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
26042688 TTTCAATTTC
*
26042698 TTAAAATAGGAAAAAATATAT
1 TTAAAA-AGAAAAAAATATAT
26042719 TTAAAAATGAAAAAAATATAAT
1 TTAAAAA-GAAAAAAATAT-AT
26042741 TTAAAAA
1 TTAAAAA
26042748 AAGCAAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.62
22 9 0.35
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (20 bp):
TTAAAAAGAAAAAAATATAT
Found at i:26059963 original size:21 final size:21
Alignment explanation
Indices: 26059929--26059982 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
26059919 TTATTCAAAA
*
26059929 TAATAATT-A-ATTAATCTAAT
1 TAATAATTAATATTAAT-TAAG
*
26059949 TAAT-TTTAATATTAATTAAG
1 TAATAATTAATATTAATTAAG
26059969 TAATAATTAATATT
1 TAATAATTAATATT
26059983 TTTTTTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 12 0.43
21 14 0.50
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TAATAATTAATATTAATTAAG
Found at i:26060201 original size:17 final size:18
Alignment explanation
Indices: 26060179--26060213 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26060169 ATAATTTTAA
26060179 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
26060196 TTTAAATGTGTAATTATT
1 TTTAAATGTCTAATTATT
26060214 ATAGCTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:26061309 original size:15 final size:16
Alignment explanation
Indices: 26061289--26061318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26061279 TTTCCTTTTA
26061289 TTTTTTCCCC-AAAAC
1 TTTTTTCCCCTAAAAC
26061304 TTTTTTCCCCTAAAA
1 TTTTTTCCCCTAAAA
26061319 AAAATTTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTTTTCCCCTAAAAC
Found at i:26061322 original size:72 final size:73
Alignment explanation
Indices: 26061246--26061380 Score: 177
Period size: 73 Copynumber: 1.9 Consensus size: 73
26061236 ATTTTTCCCC
* * * * *
26061246 AAAAATTTTACTT-TCCTAAAAC-CCCAAAAAC-TTTTTCCTTTTATTTTTTCCCCAAAACTTTT
1 AAAAAATTTACTTCCCCCAAAACACCC-AAAACTTTTTTCCTTTTACTTTCTCCCCAAAACTTTT
26061308 TTCCCCTAA
65 TTCCCCTAA
* *
26061317 AAAAAATTTACTTCCCCCCAAACACCCAAAACTTTTTTCCTTTTACTTTCTCCCGAAAACTTTT
1 AAAAAATTTACTTCCCCCAAAACACCCAAAACTTTTTTCCTTTTACTTTCTCCCCAAAACTTTT
26061381 ACTTCCCCCG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
71 12 0.22
72 11 0.20
73 31 0.57
ACGTcount: A:0.31, C:0.29, G:0.01, T:0.39
Consensus pattern (73 bp):
AAAAAATTTACTTCCCCCAAAACACCCAAAACTTTTTTCCTTTTACTTTCTCCCCAAAACTTTTT
TCCCCTAA
Found at i:26061387 original size:55 final size:53
Alignment explanation
Indices: 26061323--26061447 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 53
26061313 CTAAAAAAAA
*
26061323 TTTACTTCCCCCCAAACACC-CAAAACTTTTTTCCTTTTACTTT-CTCCCGAAAACT
1 TTTACTT-CCCCCAAAC-CCTCAAAACATTTTTCCTTTTACTTTCCT-CC-AAAACT
* * *
26061378 TTTACTTCCCCCGAACCCTCCAAACATTTTTCCTTTTGCTTTCCTCCAAAACT
1 TTTACTTCCCCCAAACCCTCAAAACATTTTTCCTTTTACTTTCCTCCAAAACT
* *
26061431 ATTACTTTCCCCAAACC
1 TTTACTTCCCCCAAACC
26061448 TTAATTTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
53 22 0.36
54 30 0.49
55 9 0.15
ACGTcount: A:0.24, C:0.38, G:0.02, T:0.36
Consensus pattern (53 bp):
TTTACTTCCCCCAAACCCTCAAAACATTTTTCCTTTTACTTTCCTCCAAAACT
Found at i:26063694 original size:17 final size:16
Alignment explanation
Indices: 26063662--26063695 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26063652 TTAATTAAGT
*
26063662 AAATTAAGATTGATTA
1 AAATTAAGAATGATTA
26063678 AAATTAAGACATGATTA
1 AAATTAAGA-ATGATTA
26063695 A
1 A
26063696 TTAAAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (16 bp):
AAATTAAGAATGATTA
Found at i:26068415 original size:16 final size:16
Alignment explanation
Indices: 26068394--26068428 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26068384 ACTTTATCAA
26068394 CAACTTGTT-CAGGTTC
1 CAACTTGTTCCA-GTTC
26068410 CAACTTGTTCCAGTTC
1 CAACTTGTTCCAGTTC
26068426 CAA
1 CAA
26068429 GCTGATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (16 bp):
CAACTTGTTCCAGTTC
Found at i:26075466 original size:23 final size:24
Alignment explanation
Indices: 26075432--26075478 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
26075422 AAAAATAATA
26075432 TTGTTGTCTTGG-TGCTATTTTTT
1 TTGTTGTCTTGGTTGCTATTTTTT
*
26075455 TTGTTGTTTTGGTTGCTATTTTTT
1 TTGTTGTCTTGGTTGCTATTTTTT
26075479 GCTGTTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.04, C:0.06, G:0.21, T:0.68
Consensus pattern (24 bp):
TTGTTGTCTTGGTTGCTATTTTTT
Found at i:26075479 original size:22 final size:23
Alignment explanation
Indices: 26075432--26075489 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
26075422 AAAAATAATA
*
26075432 TTGTTGTCTTGG-TGCTATTTTTT
1 TTGTTGTTTTGGTTGCTA-TTTTT
26075455 TTGTTGTTTTGGTTGCTA-TTTT
1 TTGTTGTTTTGGTTGCTATTTTT
*
26075477 TTGCTGTTTTGGT
1 TTGTTGTTTTGGT
26075490 ATTGTGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 16 0.50
23 11 0.34
24 5 0.16
ACGTcount: A:0.03, C:0.07, G:0.24, T:0.66
Consensus pattern (23 bp):
TTGTTGTTTTGGTTGCTATTTTT
Found at i:26075585 original size:11 final size:12
Alignment explanation
Indices: 26075543--26075598 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
26075533 ATTGTTTTGG
26075543 TGCTATTTTT-T
1 TGCTATTTTTAT
* **
26075554 TACTA-TTTTGG
1 TGCTATTTTTAT
*
26075565 TGCTGTTTTTAT
1 TGCTATTTTTAT
*
26075577 TGTTATTTTTAT
1 TGCTATTTTTAT
26075589 TGCTATTTTT
1 TGCTATTTTT
26075599 CTATTATTTT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
10 4 0.12
11 7 0.21
12 23 0.68
ACGTcount: A:0.12, C:0.07, G:0.12, T:0.68
Consensus pattern (12 bp):
TGCTATTTTTAT
Found at i:26075593 original size:46 final size:46
Alignment explanation
Indices: 26075543--26075631 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
26075533 ATTGTTTTGG
* * *
26075543 TGCTATTTTTTTACTA-TTTTGGTGCTGTTTTTATTGTTATTTTTAT
1 TGCTATTTTTCTACTATTTTTGCTGATGTTTTTA-TGTTATTTTTAT
*
26075589 TGCTATTTTTCTATTATTTTTGCTGATGTTTTTATGTTATTTT
1 TGCTATTTTTCTACTATTTTTGCTGATGTTTTTATGTTATTTT
26075632 AGTTGTTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
46 23 0.61
47 15 0.39
ACGTcount: A:0.13, C:0.07, G:0.12, T:0.67
Consensus pattern (46 bp):
TGCTATTTTTCTACTATTTTTGCTGATGTTTTTATGTTATTTTTAT
Found at i:26079110 original size:30 final size:29
Alignment explanation
Indices: 26079074--26079233 Score: 98
Period size: 30 Copynumber: 5.4 Consensus size: 29
26079064 GGGGGGGGAC
*
26079074 AAAATGGTAATTTT-GATGAAATCGGGGTT
1 AAAATGG-AATTTTAGATGAAATAGGGGTT
* * **
26079103 AAAAATGGAATTTTGGAAGATTTAGGGG-T
1 -AAAATGGAATTTTAGATGAAATAGGGGTT
*
26079132 AAAATGGTAATTTTAGGTGAAAT-GGAGGTT
1 AAAATGG-AATTTTAGATGAAATAGG-GGTT
* * *
26079162 AAAATGGGA-TTTAG-GGAAGTTTAGGGG-T
1 AAAATGGAATTTTAGATGAA--ATAGGGGTT
* * *
26079190 AAAATGGTAATTTTAGGTGAAATCGAGGTT
1 AAAATGG-AATTTTAGATGAAATAGGGGTT
26079220 AAAAATGGAATTTT
1 -AAAATGGAATTTT
26079234 GGAAAGTTTA
Statistics
Matches: 101, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
27 3 0.03
28 22 0.22
29 28 0.28
30 38 0.38
31 10 0.10
ACGTcount: A:0.37, C:0.01, G:0.29, T:0.33
Consensus pattern (29 bp):
AAAATGGAATTTTAGATGAAATAGGGGTT
Found at i:26079165 original size:59 final size:59
Alignment explanation
Indices: 26079074--26079261 Score: 246
Period size: 58 Copynumber: 3.2 Consensus size: 59
26079064 GGGGGGGGAC
*
26079074 AAAATGGTAATTTT-GATGAAATCGG-GGTTAAAAATGGAATTTTGGAAGATTTAGGGGT
1 AAAATGGTAATTTTAGGTGAAAT-GGAGGTTAAAAATGGAATTTTGGAAGATTTAGGGGT
* *
26079132 AAAATGGTAATTTTAGGTGAAATGGAGGTT-AAAATGGGATTTAGGGAAG-TTTAGGGGT
1 AAAATGGTAATTTTAGGTGAAATGGAGGTTAAAAATGGAATTT-TGGAAGATTTAGGGGT
* *
26079190 AAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAA-AGTTTA-AGGT
1 AAAATGGTAATTTTAGGTGAAATGGAGGTTAAAAATGGAATTTTGGAAGA-TTTAGGGGT
26079248 CAAAAT-GTAATTTT
1 -AAAATGGTAATTTT
26079262 TTAGAAAGTT
Statistics
Matches: 116, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
58 80 0.69
59 36 0.31
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTAGGTGAAATGGAGGTTAAAAATGGAATTTTGGAAGATTTAGGGGT
Found at i:26079192 original size:28 final size:28
Alignment explanation
Indices: 26079104--26079202 Score: 85
Period size: 28 Copynumber: 3.4 Consensus size: 28
26079094 ATCGGGGTTA
*
26079104 AAAATGGAATTT-TGGAAGATTTAGGGGT
1 AAAATGGAATTTAGGGAAG-TTTAGGGGT
* ** *
26079132 AAAATGGTAATTTTAGGTGAAATGGA-GGTT
1 AAAATGG-AA-TTTAGG-GAAGTTTAGGGGT
*
26079162 AAAATGGGATTTAGGGAAGTTTAGGGGT
1 AAAATGGAATTTAGGGAAGTTTAGGGGT
26079190 AAAATGGTAATTT
1 AAAATGG-AATTT
26079203 TAGGTGAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
27 5 0.09
28 23 0.43
29 7 0.13
30 13 0.24
31 3 0.06
32 3 0.06
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.32
Consensus pattern (28 bp):
AAAATGGAATTTAGGGAAGTTTAGGGGT
Found at i:26079300 original size:30 final size:29
Alignment explanation
Indices: 26079221--26079343 Score: 104
Period size: 30 Copynumber: 4.1 Consensus size: 29
26079211 ATCGAGGTTA
* **
26079221 AAAATGGAATTTTGG-AAAGTTTAAGGTC
1 AAAATGTAATTTTGGAAAAGTTTTGGGTC
**
26079249 AAAATGTAATTTTTTAGAAAGTTTTGGGATC
1 AAAATGTAATTTTGGA-AAAGTTTTGGG-TC
* * *
26079280 AAAGTGTAATTTTGGAAAAGTTTCGAGGTT
1 AAAATGTAATTTTGGAAAAGTTTTG-GGTC
* **
26079310 AAAATATAATTTTAAAAAAGTTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTT-GGGTC
26079340 AAAA
1 AAAA
26079344 CATGTTCAGG
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
28 12 0.16
30 44 0.59
31 18 0.24
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTGGAAAAGTTTTGGGTC
Found at i:26079334 original size:60 final size:59
Alignment explanation
Indices: 26079228--26079342 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 59
26079218 TTAAAAATGG
* * *
26079228 AATTTTGGAAAGTTTAAGGTCAAAATGTAATTTTTTAGAAAGTTTTGGGATCAAAGTGT
1 AATTTTGGAAAGTTTAAGGTCAAAATATAATTTTTAAAAAAGTTTTGGGATCAAAGTGT
* * *
26079287 AATTTTGGAAAAGTTTCGAGGTTAAAATATAA-TTTTAAAAAAGTTTTGGGGTCAAA
1 AATTTTGG-AAAGTTT-AAGGTCAAAATATAATTTTTAAAAAAGTTTTGGGATCAAA
26079343 ACATGTTCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 8 0.17
60 28 0.58
61 12 0.25
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.37
Consensus pattern (59 bp):
AATTTTGGAAAGTTTAAGGTCAAAATATAATTTTTAAAAAAGTTTTGGGATCAAAGTGT
Found at i:26080996 original size:14 final size:14
Alignment explanation
Indices: 26080966--26081003 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
26080956 CCAATTGGCC
26080966 TTTGTAATTTAGACA
1 TTTGTAA-TTAGACA
*
26080981 TTTGTAATTGGACA
1 TTTGTAATTAGACA
26080995 TTT-TAATTA
1 TTTGTAATTA
26081004 AATTTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 5 0.24
14 9 0.43
15 7 0.33
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (14 bp):
TTTGTAATTAGACA
Found at i:26081023 original size:17 final size:17
Alignment explanation
Indices: 26081001--26081125 Score: 162
Period size: 17 Copynumber: 7.3 Consensus size: 17
26080991 GACATTTTAA
* *
26081001 TTAAATTTATAATAATT
1 TTAAATTTAAAATAAAT
26081018 TTAAATTTGAAAATAAAT
1 TTAAATTT-AAAATAAAT
* * *
26081036 TTAAACTCAAATTAAAT
1 TTAAATTTAAAATAAAT
26081053 TTAAATTTAAAATAAAT
1 TTAAATTTAAAATAAAT
*
26081070 TTAAATTTAAAATAAAC
1 TTAAATTTAAAATAAAT
*
26081087 TTAAATTTAAAACAAAT
1 TTAAATTTAAAATAAAT
26081104 TT-AATCTTAAAATAAAT
1 TTAAAT-TTAAAATAAAT
26081121 TTAAA
1 TTAAA
26081126 ATGGGTTTGG
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
16 3 0.03
17 75 0.81
18 15 0.16
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:26081056 original size:6 final size:6
Alignment explanation
Indices: 26081017--26081097 Score: 71
Period size: 6 Copynumber: 14.0 Consensus size: 6
26081007 TTATAATAAT
* * *
26081017 TTTAAA TTTGAAA -ATAAA TTTAAA CTCAAA -TTAAA TTTAAA TTTAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
26081064 -ATAAA TTTAAA TTTAAA -ATAAA CTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26081098 ACAAATTTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 15 0.25
6 42 0.70
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:26081058 original size:11 final size:12
Alignment explanation
Indices: 26081018--26081114 Score: 71
Period size: 11 Copynumber: 8.4 Consensus size: 12
26081008 TATAATAATT
26081018 TTAAATTTGAAA-
1 TTAAATTT-AAAC
*
26081030 ATAAATTTAAAC
1 TTAAATTTAAAC
* *
26081042 TCAAA-TTAAAT
1 TTAAATTTAAAC
26081053 TTAAATTTAAA-
1 TTAAATTTAAAC
* *
26081064 ATAAATTTAAAT
1 TTAAATTTAAAC
*
26081076 TTAAA-ATAAAC
1 TTAAATTTAAAC
26081087 TTAAATTTAAAAC
1 TTAAATTT-AAAC
*
26081100 --AAATTTAATC
1 TTAAATTTAAAC
26081110 TTAAA
1 TTAAA
26081115 ATAAATTTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
10 3 0.04
11 37 0.55
12 23 0.34
13 4 0.06
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (12 bp):
TTAAATTTAAAC
Found at i:26081058 original size:23 final size:24
Alignment explanation
Indices: 26081018--26081125 Score: 93
Period size: 23 Copynumber: 4.7 Consensus size: 24
26081008 TATAATAATT
*
26081018 TTAAATTTGAAA-ATAAATTTAAAC
1 TTAAATTT-AAATTTAAATTTAAAC
*
26081042 TCAAA-TTAAATTTAAATTTAAA-
1 TTAAATTTAAATTTAAATTTAAAC
* *
26081064 ATAAATTTAAATTTAAA-ATAAAC
1 TTAAATTTAAATTTAAATTTAAAC
** *
26081087 TTAAATTTAAA-ACAAATTTAATC
1 TTAAATTTAAATTTAAATTTAAAC
*
26081110 TTAAA-ATAAATTTAAA
1 TTAAATTTAAATTTAAA
26081126 ATGGGTTTGG
Statistics
Matches: 66, Mismatches: 13, Indels: 11
0.73 0.14 0.12
Matches are distributed among these distances:
22 17 0.26
23 45 0.68
24 4 0.06
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (24 bp):
TTAAATTTAAATTTAAATTTAAAC
Found at i:26081858 original size:92 final size:92
Alignment explanation
Indices: 26081729--26084073 Score: 3676
Period size: 92 Copynumber: 25.7 Consensus size: 92
26081719 CTTGCTCTTA
*
26081729 TTCAATTTC-AGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
26081792 GGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* *
26081819 CTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
**
26081884 AAACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26081911 TTCAATTTTAAGAGGATAAGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26081976 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* *
26082003 TTCAATTCCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * *
26082067 GGACGAAGGCTTGTTATCCAGCTTTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26082094 TTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTCAGA
1 TTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGA
*
26082159 GGG----A--C-----ATCCAGCTTTAC
65 GGGACAAAGGCTTGATATCCAGCTCTAC
* * * *
26082176 TTTAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * *
26082241 GGACAAAGTCTTGTTATCCAACTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26082268 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGTTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * *
26082332 GGACGAAGGCTTGTTATCCAGCTTTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26082359 TTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTCAGA
1 TTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGA
* *
26082424 GGGACAAAGTCTTGATATCCAACTCTAC
65 GGGACAAAGGCTTGATATCCAGCTCTAC
* * *
26082452 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTTAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082517 GGACAAAGTCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26082544 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082609 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26082636 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082701 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* *
26082728 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAGTTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082792 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26082819 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082883 GGACGAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26082910 TTCAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26082975 GGACAAAGTCTTGTTATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26083002 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * * *
26083066 GGACGAAGGCTTGTTATCCAACTTTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26083093 TTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTCAGA
1 TTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGA
*
26083158 GGGACAAAGTCTTGATATCCAGCTCTAC
65 GGGACAAAGGCTTGATATCCAGCTCTAC
* * *
26083186 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTTAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26083251 GGACAAA-TCCTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26083277 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26083342 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26083369 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26083434 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* *
26083461 TTCAATTTCAAGAGGATAAGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
26083525 AGG-CAAAGGCTTGATATCCAGCTCTAC
66 -GGACAAAGGCTTGATATCCAGCTCTAC
*
26083552 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26083616 GGACGAAGGCTTGATATCCAGCTCTGC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* * *
26083643 TTCAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26083708 GGACAAAGTCTTGTTATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
**
26083735 TTCAATTTCAAGAGGATAGGAAAA-GATGTCAGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
26083799 GGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26083826 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26083891 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
* *
26083918 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAGTTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26083982 AGACAAAGGCTTGATATCCAGCTCTAC
66 GGACAAAGGCTTGATATCCAGCTCTAC
*
26084009 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
26084074 AGATAAAGAC
Statistics
Matches: 2098, Mismatches: 131, Indels: 50
0.92 0.06 0.02
Matches are distributed among these distances:
81 37 0.02
82 39 0.02
85 1 0.00
87 2 0.00
89 1 0.00
90 10 0.00
91 867 0.41
92 943 0.45
93 198 0.09
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (92 bp):
TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
GGACAAAGGCTTGATATCCAGCTCTAC
Found at i:26082269 original size:40 final size:41
Alignment explanation
Indices: 26082225--26083840 Score: 210
Period size: 40 Copynumber: 35.4 Consensus size: 41
26082215 ATCTAGCTCT
26082225 TACTTCAATTTC-AGAGGGACAAAGTCTTGTTATCCAACTC
1 TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * **
26082265 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGTTTCATCTTACTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * * *
26082315 TTACTTCAATTTC-AGAGGGACGAAGGCTTGTTATCCAGCTT
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * * *
26082356 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAA--A-GTCT--TG--TTATCCAACTC
*
26082408 TTACTTCAATTTC-AGAGGGACAAAGTCTTGATATCCAACTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * *
26082449 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG--TTATCCAACTC
* * *
26082500 TTACTTTAATTTC-AGAGGGACAAAGTCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* **
26082541 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTCATCTTACTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG-TT-ATCCAACTC
* * * *
26082592 TTACTTCAATTTC-AGAGAGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* **
26082633 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTCATCTTACTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG-TT-ATCCAACTC
* * * *
26082684 TTACTTCAATTTC-AGAGAGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * ***
26082725 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * * * *
26082775 TTACTTCAGTTTC-AGAGAGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * ***
26082816 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * * *
26082866 TTACTTCAATTTC-AGAGGGACGAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * * *
26082907 TACTTCAACTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG--TTATCCAACTC
*
26082958 TTACTTCAATTTC-AGAGGGACAAAGTCTTGTTATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * ***
26082999 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * *
26083049 TTACTTCAATTTC-AGAGGGACGAAGGCTTGTTATCCAACTT
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * * *
26083090 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAA--A-GTCT--TG--TTATCCAACTC
* *
26083142 TTACTTCAATTTC-AGAGGGACAAAGTCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * *
26083183 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG--TTATCCAACTC
* * * *
26083234 TTACTTTAATTTC-AGAGGGACAAA-TCCTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* **
26083274 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTCATCTTACTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG-TT-ATCCAACTC
* * * *
26083325 TTACTTCAATTTC-AGAGAGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* **
26083366 TACTTCAATTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTCATCTTACTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG-TT-ATCCAACTC
* * * *
26083417 TTACTTCAATTTC-AGAGAGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * ***
26083458 TACTTCAATTTCAAGAGGATAAGAAAAGATGTCGGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGAGG----GACAA-A-GTC-TTG-TT-ATCCAACTC
* * *
26083508 TTACTTCAATTTC-AGAGAGG-CAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAG-GGACAAAGTCTTGTTATCCAACTC
* * ***
26083549 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * * *
26083599 TTACTTCAATTTC-AGAGGGACGAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * * * *
26083640 TGCTTCAACTTCAAGAGGATAGGA-AAATGATGTTGGTGCTTTATCTAGCTC
1 TACTTCAATTTCAAGA-G---GGACAAA-G-T-CT--TG--TTATCCAACTC
*
26083691 TTACTTCAATTTC-AGAGGGACAAAGTCTTGTTATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
* * ***
26083732 TACTTCAATTTCAAGAGGATAGGAAAAGATGTCAGTGCTTCATCTTGCTC
1 TACTTCAATTTCAAGA-G---GGACAA-A-GTC-TTG-TT-ATCCAACTC
* * *
26083782 TTACTTCAATTTC-AGAGGGACAAAGGCTTGATATCCAGCTC
1 -TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
26083823 TACTTCAATTTCAAGAGG
1 TACTTCAATTTCAAGAGG
26083841 ATAGGAAAAT
Statistics
Matches: 1155, Mismatches: 203, Indels: 435
0.64 0.11 0.24
Matches are distributed among these distances:
39 11 0.01
40 211 0.18
41 170 0.15
42 30 0.03
43 35 0.03
44 39 0.03
45 84 0.07
46 43 0.04
47 54 0.05
48 52 0.05
49 32 0.03
50 87 0.08
51 169 0.15
52 114 0.10
53 24 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (41 bp):
TACTTCAATTTCAAGAGGGACAAAGTCTTGTTATCCAACTC
Found at i:26083147 original size:53 final size:51
Alignment explanation
Indices: 26083089--26084078 Score: 322
Period size: 40 Copynumber: 21.4 Consensus size: 51
26083079 TTATCCAACT
26083089 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATG-TTGATGCTTTATCTAGCTC
* *
26083142 TTACTTCAATTTCAGA-G---GGACAAA-G-TCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATGTTGATGCTTTATCTAGCTC
*
26083183 -TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* * ** *
26083234 TTACTTTAATTTCAGA-G---GGACAA--ATCCTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* *
26083274 -TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTA-CTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATC-TAGCTC
*
26083325 TTACTTCAATTTCAGA-G--A-GACAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATG-TTGATGCTTTATCTAGCTC
* *
26083366 -TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTA-CTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATC-TAGCTC
*
26083417 TTACTTCAATTTCAGA-G--A-GACAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATG-TTGATGCTTTATCTAGCTC
* * * * *
26083458 -TACTTCAATTTCAAGAGGATAAGAAAA-GATGTCGGTGCTTCATCTTGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* *
26083508 TTACTTCAATTTCAGA-G--AGGCAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGAAAATGATG-TTGATGCTTTATCTAGCTC
* * * *
26083549 -TACTTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* * *
26083599 TTACTTCAATTTCAGAGG-GACG--AA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGAAAATGATG-TTGATGCTTTATCTAGCTC
* * *
26083640 -TGCTTCAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* *
26083691 TTACTTCAATTTCAGA-G---GGACAAA-G-T-CT--TG--TTATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATGTTGATGCTTTATCTAGCTC
* * *
26083732 -TACTTCAATTTCAAGAGGATAGGAAAA-GATG-TCAGTGCTTCATCTTGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGA-TGCTTTATCTAGCTC
*
26083782 TTACTTCAATTTCAGA-G---GGACAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATG-TTGATGCTTTATCTAGCTC
* *
26083823 -TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTA-CTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATC-TAGCTC
*
26083874 TTACTTCAATTTCAGA-G--A-GACAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATG-TTGATGCTTTATCTAGCTC
* * * *
26083915 -TACTTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
* *
26083965 TTACTTCAGTTTCAGA-G--A-GACAAA-G--GCTTGA-----TATCCAGCTC
1 TTACTTCAATTTCAGAGGATAGGA-AAATGATG-TTGATGCTTTATCTAGCTC
* *
26084006 -TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTA-CTC
1 TTACTTCAATTTC-AGAGGATAGGAAAATGATGTTGATGCTTTATC-TAGCTC
26084057 TTACTTCAATTTCAGAGAGATA
1 TTACTTCAATTTCAGAG-GATA
26084079 AAGACTCATT
Statistics
Matches: 692, Mismatches: 90, Indels: 311
0.63 0.08 0.28
Matches are distributed among these distances:
39 11 0.02
40 120 0.17
41 95 0.14
42 10 0.01
43 2 0.00
44 42 0.06
45 42 0.06
46 48 0.07
47 43 0.06
48 21 0.03
49 8 0.01
50 48 0.07
51 109 0.16
52 80 0.12
53 13 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (51 bp):
TTACTTCAATTTCAGAGGATAGGAAAATGATGTTGATGCTTTATCTAGCTC
Found at i:26084118 original size:183 final size:183
Alignment explanation
Indices: 26081729--26084081 Score: 3668
Period size: 183 Copynumber: 12.9 Consensus size: 183
26081719 CTTGCTCTTA
26081729 TTCAATTTC-AGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
*
26081793 GACAAAGGCTTGATATCCAGCTCTACCTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
*
26081858 ATCTTACTCTTACTTCAATTTCAGAGAAACAAAGGCTTGATATCCAGCTCTAC
131 ATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* * * *
26081911 TTCAATTTTAAGAGGATAAGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * *
26081976 AGACAAAGGCTTGATATCCAGCTCTACTTCAATTCCAAGAGGATAGGAAAA-GATGTCGGTGCTT
65 GGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
* * * * *
26082040 CATCTTGCTCTTACTTCAATTTCAGAGGGACGAAGGCTTGTTATCCAGCTTTAC
130 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* * * *
26082094 TTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTCAGA
1 TTCAATTTCAAGAGGATAGGAAAA-GATG-TCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGA
* * *
26082159 GGG----A--C-----ATCCAGCTTTACTTTAACTTCAAGAGGATAGGAAAATGATGTTGGTGCT
64 GGGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCT
* * * * *
26082213 TTATC-TAGCTCTTACTTCAATTTCAGAGGGACAAAGTCTTGTTATCCAACTCTAC
129 TCATCTTA-CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* *
26082268 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGTTTCATCTTACTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
* * * *
26082333 GACGAAGGCTTGTTATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTT
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTT
* * * *
26082398 TATC-TAGCTCTTACTTCAATTTCAGAGGGACAAAGTCTTGATATCCAACTCTAC
130 CATCTTA-CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* * * *
26082452 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTTAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
*
26082517 GGACAAAGTCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
65 GGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
26082582 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
130 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* *
26082636 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26082701 AGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTT
65 GGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
* *
26082765 CATCTTGCTCTTACTTCAGTTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
130 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
26082819 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
* * *
26082884 GACGAAGGCTTGATATCCAGCTCTACTTCAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTT
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
* * *
26082949 ATC-TAGCTCTTACTTCAATTTCAGAGGGACAAAGTCTTGTTATCCAGCTCTAC
131 ATCTTA-CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
26083002 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
* * * * *
26083067 GACGAAGGCTTGTTATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTT
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTT
* * *
26083132 TATC-TAGCTCTTACTTCAATTTCAGAGGGACAAAGTCTTGATATCCAGCTCTAC
130 CATCTTA-CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* * * *
26083186 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTTATCTAGCTCTTACTTTAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* *
26083251 GGACAAA-TCCTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
65 GGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
26083315 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
130 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* *
26083369 TTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTACTCTTACTTCAATTTCAGAG
1 TTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAG
* * *
26083434 AGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAAGAAAA-GATGTCGGTGCTT
65 GGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTT
* *
26083498 CATCTTGCTCTTACTTCAATTTCAGAGAGGCAAAGGCTTGATATCCAGCTCTAC
130 CATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
26083552 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
* * * *
26083617 GACGAAGGCTTGATATCCAGCTCTGCTTCAACTTCAAGAGGATAGGAAAATGATGTTGGTGCTTT
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
* * *
26083682 ATC-TAGCTCTTACTTCAATTTCAGAGGGACAAAGTCTTGTTATCCAGCTCTAC
131 ATCTTA-CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
*
26083735 TTCAATTTCAAGAGGATAGGAAAAGATGTCAGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
26083800 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
26083865 ATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
131 ATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
* *
26083918 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAGTTTCAGAGA
1 TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
26083983 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
66 GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
*
26084048 ATCTTACTCTTACTTCAATTTCAGAGAGATAAAG
131 ATCTTACTCTTACTTCAATTTCAGAGAGACAAAG
26084082 ACTCATTATC
Statistics
Matches: 2008, Mismatches: 135, Indels: 55
0.91 0.06 0.03
Matches are distributed among these distances:
172 32 0.02
173 37 0.02
174 82 0.04
176 1 0.00
178 2 0.00
180 1 0.00
182 180 0.09
183 1002 0.50
184 541 0.27
185 130 0.06
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (183 bp):
TTCAATTTCAAGAGGATAGGAAAAGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGG
GACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTC
ATCTTACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCTAC
Found at i:26084396 original size:101 final size:101
Alignment explanation
Indices: 26084174--26084397 Score: 263
Period size: 101 Copynumber: 2.2 Consensus size: 101
26084164 AGAGAGATAA
* * * * * *
26084174 AGACTTTTCCCTTTTGTCTTTTTGCGGTACTGGATCTGCCGTTGCGGTCTTAGATCTTTCTCGTC
1 AGACCTTTCCCTTTTGTGTTTTTGCGATACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTC
* * *
26084239 GTGTCTTTTGAGGTACACGGTCCGCCGTTGCGACTT
66 ATGTCTTTTGAGGTACACGATCCGCCATTGCGACTT
* * * *
26084275 AGACCTTTCCCTTTTCTGTTTTTGCGATATTGGATCTACCATTGTGGTCTTAGATCTTTCCCTTC
1 AGACCTTTCCCTTTTGTGTTTTTGCGATACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGT-
* * * *
26084340 CATG-CTTTTGAGGTATACGATCTGTCATTGTGACTT
65 CATGTCTTTTGAGGTACACGATCCGCCATTGCGACTT
26084376 AGACCTTT-CCTTGTTGTGTTTT
1 AGACCTTTCCCTT-TTGTGTTTT
26084398 GTGGTGCTGA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
100 4 0.04
101 96 0.93
102 3 0.03
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (101 bp):
AGACCTTTCCCTTTTGTGTTTTTGCGATACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTC
ATGTCTTTTGAGGTACACGATCCGCCATTGCGACTT
Found at i:26091179 original size:58 final size:59
Alignment explanation
Indices: 26090996--26091249 Score: 363
Period size: 58 Copynumber: 4.3 Consensus size: 59
26090986 AGACTCTCGA
* * *
26090996 GGGGGATAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGGATTTAGGGAAGTTT
1 GGGGG-TAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTT
* *
26091056 GGGGGTAAAATGGTAATTTTGGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTT
* * *
26091115 GAGGGTAAAATGGCAATTTTAGGTGAAATCG-GGTTGAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTT
* *
26091173 GGGGGTAAAATGGTAATTTTGGGTGAAAT-TAGGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTT
*
26091231 -AGGGTCAAAAT-GTAATTTT
1 GGGGGT-AAAATGGTAATTTT
26091250 TTAGAAAGTT
Statistics
Matches: 176, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
57 12 0.07
58 83 0.47
59 76 0.43
60 5 0.03
ACGTcount: A:0.35, C:0.02, G:0.31, T:0.33
Consensus pattern (59 bp):
GGGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTT
Found at i:26091193 original size:29 final size:28
Alignment explanation
Indices: 26091034--26091249 Score: 117
Period size: 29 Copynumber: 7.5 Consensus size: 28
26091024 ATCGAGGTTA
* * *
26091034 AAAATGGGATTTAGGGAAGTTTGGGGGT
1 AAAATGGAATTTTGGAAAGTTTGGGGGT
* *
26091062 AAAATGGTAATTTTGGGTGAAA--TTGAGGTT
1 AAAATGG-AATTTT--G-GAAAGTTTGGGGGT
*
26091092 AAAAATGGAATTTTGGAAAGTTTGAGGGT
1 -AAAATGGAATTTTGGAAAGTTTGGGGGT
* *
26091121 AAAATGGCAATTTTAGGTGAAA---TCGGGTT
1 AAAATGG-AATTTT--G-GAAAGTTTGGGGGT
26091150 GAAAATGGAATTTTGGAAAGTTTGGGGGT
1 -AAAATGGAATTTTGGAAAGTTTGGGGGT
* *
26091179 AAAATGGTAATTTTGGGTGAAA--TT-AGGTT
1 AAAATGG-AATTTT--G-GAAAGTTTGGGGGT
*
26091208 AAAAATGGAATTTTGGAAAGTTT-AGGGT
1 -AAAATGGAATTTTGGAAAGTTTGGGGGT
*
26091236 CAAAATGTAATTTT
1 -AAAATGGAATTTT
26091250 TTAGAAAGTT
Statistics
Matches: 150, Mismatches: 16, Indels: 44
0.71 0.08 0.21
Matches are distributed among these distances:
26 8 0.05
27 6 0.04
28 40 0.27
29 47 0.31
30 28 0.19
31 10 0.07
32 11 0.07
ACGTcount: A:0.35, C:0.01, G:0.31, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTTGGGGGT
Found at i:26091250 original size:29 final size:29
Alignment explanation
Indices: 26091151--26091310 Score: 105
Period size: 30 Copynumber: 5.4 Consensus size: 29
26091141 AATCGGGTTG
* *
26091151 AAAATGGAA-TTTTGGAAAGTTTGGGGGT-
1 AAAATGTAATTTTTGGAAAGTTT-AGGGTC
* * *
26091179 AAAATGGTAATTTTGGGTGAAA--TTAGGTTA
1 AAAAT-GTAATTTT-TG-GAAAGTTTAGGGTC
*
26091209 AAAATGGAA-TTTTGGAAAGTTTAGGGTC
1 AAAATGTAATTTTTGGAAAGTTTAGGGTC
* *
26091237 AAAATGTAATTTTTTAGAAAGTTTTGAGGTC
1 AAAATGTAA-TTTTTGGAAAGTTTAG-GGTC
* * * *
26091268 AAAGTGTAATTTTAGAAAAGTTTCGGGGTC
1 AAAATGTAATTTTTGGAAAGTTT-AGGGTC
*
26091298 AAAATATAATTTT
1 AAAATGTAATTTT
26091311 AAAAAAGTTT
Statistics
Matches: 103, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
26 4 0.04
27 1 0.01
28 22 0.21
29 9 0.09
30 49 0.48
31 14 0.14
32 4 0.04
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAAGTTTAGGGTC
Found at i:26091253 original size:117 final size:118
Alignment explanation
Indices: 26091002--26091242 Score: 407
Period size: 117 Copynumber: 2.1 Consensus size: 118
26090992 TCGAGGGGGA
* * *
26091002 TAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGGATTTAGGGAAGTTTGGGGGTAAAAT
1 TAAAATGGCAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTGGGGGTAAAAT
26091067 GGTAATTTTGGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTTGAGGG
66 GGTAATTTTGGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTTGAGGG
* *
26091120 TAAAATGGCAATTTTAGGTGAAATCG-GGTTGAAAATGGAATTTTGGAAAGTTTGGGGGTAAAAT
1 TAAAATGGCAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTGGGGGTAAAAT
26091184 GGTAATTTTGGGTGAAATT-AGGTTAAAAATGGAATTTTGGAAAGTTT-AGGG
66 GGTAATTTTGGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTTGAGGG
26091235 TCAAAATG
1 T-AAAATG
26091243 TAATTTTTTA
Statistics
Matches: 117, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
115 5 0.04
116 34 0.29
117 53 0.45
118 25 0.21
ACGTcount: A:0.35, C:0.02, G:0.31, T:0.32
Consensus pattern (118 bp):
TAAAATGGCAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTGGGGGTAAAAT
GGTAATTTTGGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTTGAGGG
Found at i:26091311 original size:30 final size:30
Alignment explanation
Indices: 26091209--26091331 Score: 135
Period size: 30 Copynumber: 4.1 Consensus size: 30
26091199 AATTAGGTTA
* * *
26091209 AAAATGGAATTTT-GGAAAG-TTTAGGGTC
1 AAAATGTAATTTTAGAAAAGTTTTGGGGTC
*
26091237 AAAATGTAATTTTTTAG-AAAGTTTTGAGGTC
1 AAAATGTAA--TTTTAGAAAAGTTTTGGGGTC
* *
26091268 AAAGTGTAATTTTAGAAAAGTTTCGGGGTC
1 AAAATGTAATTTTAGAAAAGTTTTGGGGTC
* *
26091298 AAAATATAATTTTAAAAAAGTTTTGGGGTC
1 AAAATGTAATTTTAGAAAAGTTTTGGGGTC
26091328 AAAA
1 AAAA
26091332 CATGTTCAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
28 8 0.10
29 6 0.08
30 50 0.62
31 16 0.20
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTAGAAAAGTTTTGGGGTC
Found at i:26091328 original size:60 final size:59
Alignment explanation
Indices: 26091216--26091330 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 59
26091206 TTAAAAATGG
* * * *
26091216 AATTTTGGAAAGTTTAGGGTCAAAATGTAATTTTTTAGAAAGTTTTGAGGTCAAAGTGT
1 AATTTTGAAAAGTTTAGGGTCAAAATATAATTTTTAAAAAAGTTTTGAGGTCAAAGTGT
* *
26091275 AATTTTAGAAAAGTTTCGGGGTCAAAATATAA-TTTTAAAAAAGTTTTGGGGTCAAA
1 AATTTT-GAAAAGTTT-AGGGTCAAAATATAATTTTTAAAAAAGTTTTGAGGTCAAA
26091331 ACATGTTCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 6 0.12
60 29 0.60
61 13 0.27
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (59 bp):
AATTTTGAAAAGTTTAGGGTCAAAATATAATTTTTAAAAAAGTTTTGAGGTCAAAGTGT
Found at i:26092975 original size:14 final size:14
Alignment explanation
Indices: 26092945--26092982 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
26092935 CCAATTGACC
26092945 TTTGTAATTTAGACA
1 TTTGTAA-TTAGACA
*
26092960 TTTGTAATTGGACA
1 TTTGTAATTAGACA
26092974 TTT-TAATTA
1 TTTGTAATTA
26092983 AATTTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 5 0.24
14 9 0.43
15 7 0.33
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (14 bp):
TTTGTAATTAGACA
Found at i:26093002 original size:17 final size:17
Alignment explanation
Indices: 26092980--26093087 Score: 128
Period size: 17 Copynumber: 6.3 Consensus size: 17
26092970 GACATTTTAA
* *
26092980 TTAAATTTATAATAATT
1 TTAAATTTAAAATAAAT
26092997 TTAAATTTGAAAATAAAT
1 TTAAATTT-AAAATAAAT
* * *
26093015 TTAAACTCAAATTAAAT
1 TTAAATTTAAAATAAAT
*
26093032 TTAAATTTAAAATAAAC
1 TTAAATTTAAAATAAAT
26093049 TTAAATTTAAAATAAA-
1 TTAAATTTAAAATAAAT
*
26093065 TTGAATCTTAAAATAAAT
1 TTAAAT-TTAAAATAAAT
26093083 TTAAA
1 TTAAA
26093088 ATGGGTTTAG
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
16 5 0.06
17 55 0.71
18 17 0.22
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:26093037 original size:23 final size:23
Alignment explanation
Indices: 26093010--26093089 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
26093000 AATTTGAAAA
*
26093010 TAAATTTAAACTCAAA-TTAAATT
1 TAAATTTAAAAT-AAACTTAAATT
26093033 TAAATTTAAAATAAACTTAAATT
1 TAAATTTAAAATAAACTTAAATT
* * * *
26093056 TAAA-ATAAATTGAATCTTAAA-A
1 TAAATTTAAAAT-AAACTTAAATT
26093078 TAAATTTAAAAT
1 TAAATTTAAAAT
26093090 GGGTTTAGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
22 12 0.26
23 35 0.74
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (23 bp):
TAAATTTAAAATAAACTTAAATT
Found at i:26093061 original size:7 final size:6
Alignment explanation
Indices: 26092996--26093059 Score: 53
Period size: 6 Copynumber: 11.0 Consensus size: 6
26092986 TTATAATAAT
* * *
26092996 TTTAAA TTTGAAA -ATAAA TTTAAA CTCAAA -TTAAA TTTAAA TTTAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
26093043 -ATAAA CTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
26093060 ATAAATTGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
5 11 0.24
6 32 0.70
7 3 0.07
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (6 bp):
TTTAAA
Found at i:26094157 original size:19 final size:19
Alignment explanation
Indices: 26094103--26094145 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26094093 TAATATAATG
*
26094103 ATTATA-AAATATATAGTTT
1 ATTATATAATTATATA-TTT
*
26094122 ATTATATAATTACATATTT
1 ATTATATAATTATATATTT
26094141 ATTAT
1 ATTAT
26094146 TTTTTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
ATTATATAATTATATATTT
Found at i:26094951 original size:27 final size:29
Alignment explanation
Indices: 26094911--26094970 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
26094901 GAAATAAAAC
26094911 AAAATAAAAAGA-TTAAATTAAAA-AATA
1 AAAATAAAAAGATTTAAATTAAAAGAATA
* * * *
26094938 AAAATATAAGGATTTAATTTAAAAGGATA
1 AAAATAAAAAGATTTAAATTAAAAGAATA
26094967 AAAA
1 AAAA
26094971 AAGGATTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 10 0.37
28 10 0.37
29 7 0.26
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (29 bp):
AAAATAAAAAGATTTAAATTAAAAGAATA
Found at i:26098712 original size:23 final size:23
Alignment explanation
Indices: 26098679--26098723 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26098669 AATAATATTA
* * *
26098679 TTTTTATTTTAGTTATTTTAATT
1 TTTTTAATTTAGTCACTTTAATT
26098702 TTTTTAATTTAGTCACTTTAAT
1 TTTTTAATTTAGTCACTTTAAT
26098724 AAAGATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTTAATTTAGTCACTTTAATT
Found at i:26100372 original size:10 final size:9
Alignment explanation
Indices: 26100346--26100445 Score: 71
Period size: 10 Copynumber: 10.9 Consensus size: 9
26100336 AAAAAGAATT
26100346 TAATTTTTA
1 TAATTTTTA
* *
26100355 AAAATTTTA
1 TAATTTTTA
26100364 TATATTTTTA
1 TA-ATTTTTA
26100374 TAATTTTCTA
1 TAATTTT-TA
* *
26100384 TACTTCTTA
1 TAATTTTTA
26100393 TAAGTTTTTA
1 TAA-TTTTTA
* *
26100403 CACTTTTCTA
1 TAATTTT-TA
26100413 T-A-TTTT-
1 TAATTTTTA
26100419 TAATTTTTAA
1 TAATTTTT-A
*
26100429 TCATTTTTA
1 TAATTTTTA
26100438 TAATTTTT
1 TAATTTTT
26100446 TTGTATTTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
6 1 0.01
7 2 0.03
8 7 0.10
9 29 0.42
10 30 0.43
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (9 bp):
TAATTTTTA
Found at i:26100474 original size:19 final size:17
Alignment explanation
Indices: 26100358--26100475 Score: 60
Period size: 19 Copynumber: 6.4 Consensus size: 17
26100348 ATTTTTAAAA
*
26100358 ATTTTATATATTTTTATA
1 ATTTT-TATATTTTTATC
* *
26100376 ATTTTCTATACTTCTTATA
1 ATTTT-TATA-TTTTTATC
*
26100395 AGTTTTTACACTTTTCTAT-
1 A-TTTTTATA-TTTT-TATC
26100414 ATTTTTA-ATTTTTAATC
1 ATTTTTATATTTTT-ATC
* *
26100431 ATTTTTATAATTTTTTTGT
1 ATTTTTAT-ATTTTTAT-C
26100450 ATTTTTTATGATTTTCTATC
1 A-TTTTTAT-ATTTT-TATC
26100470 ATTTTT
1 ATTTTT
26100476 TTTGTCACAG
Statistics
Matches: 81, Mismatches: 9, Indels: 19
0.74 0.08 0.17
Matches are distributed among these distances:
15 1 0.01
16 6 0.07
17 8 0.10
18 16 0.20
19 28 0.35
20 20 0.25
21 2 0.02
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.65
Consensus pattern (17 bp):
ATTTTTATATTTTTATC
Found at i:26100474 original size:30 final size:29
Alignment explanation
Indices: 26100421--26100477 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
26100411 TATATTTTTA
26100421 ATTTTTAATCATTTTTATAATTTTTTTGT
1 ATTTTTAATCATTTTTATAATTTTTTTGT
* * *
26100450 ATTTTTTATGATTTTCTATCATTTTTTT
1 ATTTTTAATCATTTT-TATAATTTTTTT
26100478 TGTCACAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (29 bp):
ATTTTTAATCATTTTTATAATTTTTTTGT
Found at i:26102763 original size:6 final size:6
Alignment explanation
Indices: 26102752--26102783 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
26102742 TCAGTATAGA
26102752 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TT
26102784 GAAGTTGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:26105641 original size:43 final size:42
Alignment explanation
Indices: 26105538--26105720 Score: 233
Period size: 42 Copynumber: 4.3 Consensus size: 42
26105528 TTATGAGGAA
* * * *
26105538 AAACCCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCAC
1 AAACGCCGCTAAAAAACATGATCTTTAGCGGCGCTTCTCCAC
* * * * *
26105580 AAATGCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAAAAAACATGATCTTTAGCGGCGCTTCT-CCAC
*
26105623 AAACGCCGCTAAAAAACATGATCTTTAGCGTCGCTTCTCCAC
1 AAACGCCGCTAAAAAACATGATCTTTAGCGGCGCTTCTCCAC
* *
26105665 AAACGCCGCT-AAAAACATGATCTTTAACGGCGCCTCTCTCAC
1 AAACGCCGCTAAAAAACATGATCTTTAGCGGCGCTTCTC-CAC
26105707 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
26105721 TTAATAAATT
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
41 25 0.20
42 60 0.48
43 39 0.31
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAAAACATGATCTTTAGCGGCGCTTCTCCAC
Found at i:26108433 original size:35 final size:38
Alignment explanation
Indices: 26108390--26108472 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 38
26108380 ATAAAACCAA
*
26108390 TTTTTTAGTTTATATA-AG-TTTTAAA-ATTTAATAAT
1 TTTTTTAGTTTATATATAGTTTTTAAATAATTAATAAT
26108425 TTTTTTAGTTTATATATAGTTTTTAAATAATTAATAAT
1 TTTTTTAGTTTATATATAGTTTTTAAATAATTAATAAT
* *
26108463 ATTATTAGTT
1 TTTTTTAGTT
26108473 AATTTAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 16 0.38
36 2 0.05
37 7 0.17
38 17 0.40
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (38 bp):
TTTTTTAGTTTATATATAGTTTTTAAATAATTAATAAT
Found at i:26108436 original size:17 final size:18
Alignment explanation
Indices: 26108390--26108448 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 18
26108380 ATAAAACCAA
26108390 TTTTTTAGTTTATATAAG
1 TTTTTTAGTTTATATAAG
** * *
26108408 TTTTAAAATTTA-ATAAT
1 TTTTTTAGTTTATATAAG
26108425 TTTTTTAGTTTATATATAG
1 TTTTTTAGTTTATATA-AG
26108444 TTTTT
1 TTTTT
26108449 AAATAATTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
17 13 0.42
18 12 0.39
19 6 0.19
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.63
Consensus pattern (18 bp):
TTTTTTAGTTTATATAAG
Found at i:26108588 original size:41 final size:41
Alignment explanation
Indices: 26108542--26108656 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
26108532 CTATTGTTTA
26108542 ACCTTTAGCGGCG-TTTATGAGAAAGCGCCGCTAATGCTCTG
1 ACCTTTAGCGGCGCTTTATGAGAAA-CGCCGCTAATGCTCTG
* * * * * *
26108583 ACCTTTAGCGGCGCTTTCTCATAAACGTCGCTAATGTTCTA
1 ACCTTTAGCGGCGCTTTATGAGAAACGCCGCTAATGCTCTG
* * *
26108624 ACTTTTAGCGGCGCTTT-TTATAAACGCCGCTAA
1 ACCTTTAGCGGCGCTTTATGAGAAACGCCGCTAA
26108657 AGGCCAGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 14 0.22
41 42 0.66
42 8 0.12
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (41 bp):
ACCTTTAGCGGCGCTTTATGAGAAACGCCGCTAATGCTCTG
Found at i:26113875 original size:289 final size:289
Alignment explanation
Indices: 26113356--26113937 Score: 1092
Period size: 289 Copynumber: 2.0 Consensus size: 289
26113346 GTGACCTTCC
* * *
26113356 AACGGAGGTGAAGACGACGGTGCCTTTAGGATCCATTGAACTAGGCAGGGTCGGAGTCAGTGTGT
1 AACGGAGGTGAAGACGACGATGCCTCTAGGATCCATTGAACTAGGCAGGGTAGGAGTCAGTGTGT
*
26113421 CTAAATTAACAGCTTTAAATAAGTGGCGACCACCTAAGAGTGAAGTGAGTAGATTAGGGGAAAGG
66 CTAAATTAACAGCTTTAAATAAGTGGCGACCACCTAAGAGTGAAGTGAGTAGATCAGGGGAAAGG
*
26113486 CAGAAAGGTTGTCGGTTGTTTACCTGCTTGCGTAGGAGATGACGCAGATTTGCTTGTCTTATCAT
131 CAGAAAGGTTGTCGGTTGTTTACCGGCTTGCGTAGGAGATGACGCAGATTTGCTTGTCTTATCAT
26113551 CTCCATTCTTGAAATTATGAATTTTTAAATCCAAAATTTATCCCTGGTTGTCTTTTATATAAAAA
196 CTCCATTCTTGAAATTATGAATTTTTAAATCCAAAATTTATCCCTGGTTGTCTTTTATATAAAAA
26113616 ATTTCAGGATTGGCAACACTGGAAATATA
261 ATTTCAGGATTGGCAACACTGGAAATATA
*
26113645 AACGGAGGTGAAGACGACGATGCCTCTAGGATCCATTGAACTAGGCATGGTAGGAGTCAGTGTGT
1 AACGGAGGTGAAGACGACGATGCCTCTAGGATCCATTGAACTAGGCAGGGTAGGAGTCAGTGTGT
* *
26113710 CTAAATTAACAGCTTTAAATAAGTGGCGACCACCTAAGAGTGAAGTGATTGGATCAGGGGAAAGG
66 CTAAATTAACAGCTTTAAATAAGTGGCGACCACCTAAGAGTGAAGTGAGTAGATCAGGGGAAAGG
26113775 CAGAAAGGTTGTCGGTTGTTTACCGGCTTGCGTAGGAGATGACGCAGATTTGCTTGTCTTATCAT
131 CAGAAAGGTTGTCGGTTGTTTACCGGCTTGCGTAGGAGATGACGCAGATTTGCTTGTCTTATCAT
26113840 CTCCATTCTTGAAATTATGAATTTTTAAATCCAAAATTTATCCCTGGTTGTCTTTTATATAAAAA
196 CTCCATTCTTGAAATTATGAATTTTTAAATCCAAAATTTATCCCTGGTTGTCTTTTATATAAAAA
26113905 ATTTCAGGATTGGCAACACTGGAAATATA
261 ATTTCAGGATTGGCAACACTGGAAATATA
26113934 AACG
1 AACG
26113938 CCTAAACCTC
Statistics
Matches: 285, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
289 285 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (289 bp):
AACGGAGGTGAAGACGACGATGCCTCTAGGATCCATTGAACTAGGCAGGGTAGGAGTCAGTGTGT
CTAAATTAACAGCTTTAAATAAGTGGCGACCACCTAAGAGTGAAGTGAGTAGATCAGGGGAAAGG
CAGAAAGGTTGTCGGTTGTTTACCGGCTTGCGTAGGAGATGACGCAGATTTGCTTGTCTTATCAT
CTCCATTCTTGAAATTATGAATTTTTAAATCCAAAATTTATCCCTGGTTGTCTTTTATATAAAAA
ATTTCAGGATTGGCAACACTGGAAATATA
Found at i:26114156 original size:1 final size:1
Alignment explanation
Indices: 26114152--26114184 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
26114142 ATTTTTTTTT
*
26114152 GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
26114185 ACACCCTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Found at i:26118338 original size:28 final size:28
Alignment explanation
Indices: 26118307--26118379 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
26118297 CCAAATATCA
* * *
26118307 CCACAAAAGTTTCCTTTAATTGAGATAG
1 CCACAAAAGCTTCCTTTAACTAAGATAG
* *
26118335 CCACAAAGGCATCCTTTAACTAAGATAG
1 CCACAAAAGCTTCCTTTAACTAAGATAG
*
26118363 CCACAAATGCTTCCTTT
1 CCACAAAAGCTTCCTTT
26118380 CAAAGACTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CCACAAAAGCTTCCTTTAACTAAGATAG
Found at i:26118454 original size:28 final size:29
Alignment explanation
Indices: 26118423--26118571 Score: 166
Period size: 28 Copynumber: 5.3 Consensus size: 29
26118413 TTAATAGAAA
*
26118423 CAGCCACAAAGGCTTTCTTTGACAGAG-T
1 CAGCCACAAAGGCTTTCTTTAACAGAGAT
26118451 CAGCCACAAAGGCTTTCCTTTAACAGAGAT
1 CAGCCACAAAGGCTTT-CTTTAACAGAGAT
* * *
26118481 C-GCCACAAAGGCGTCCTTTAATAGAGAT
1 CAGCCACAAAGGCTTTCTTTAACAGAGAT
* * *
26118509 -AGCCACAAAGACTTT-TTTTATAGAG-T
1 CAGCCACAAAGGCTTTCTTTAACAGAGAT
*
26118535 CATCCACAAAGGCTTTCCTTTAACAGAGAT
1 CAGCCACAAAGGCTTT-CTTTAACAGAGAT
26118565 C-GCCACA
1 CAGCCACA
26118572 GAGGTGTGCC
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 22 0.22
28 39 0.39
29 35 0.35
30 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (29 bp):
CAGCCACAAAGGCTTTCTTTAACAGAGAT
Found at i:26118486 original size:57 final size:56
Alignment explanation
Indices: 26118423--26118571 Score: 162
Period size: 57 Copynumber: 2.7 Consensus size: 56
26118413 TTAATAGAAA
* *
26118423 CAGCCACAAAGGCTTTCTTTGACAGAG-TCAGCCACAAAGGCTTTCCTTTAACAGAGAT
1 CAGCCACAAAGGCTTTCTTTAACAGAGATCAGCCACAAAGACTTT--TTTAACAGAG-T
* * * * *
26118481 C-GCCACAAAGGCGTCCTTTAATAGAGAT-AGCCACAAAGACTTTTTTTATAGAGT
1 CAGCCACAAAGGCTTTCTTTAACAGAGATCAGCCACAAAGACTTTTTTAACAGAGT
*
26118535 CATCCACAAAGGCTTTCCTTTAACAGAGATC-GCCACA
1 CAGCCACAAAGGCTTT-CTTTAACAGAGATCAGCCACA
26118572 GAGGTGTGCC
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
54 2 0.03
55 19 0.25
56 18 0.24
57 35 0.46
58 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (56 bp):
CAGCCACAAAGGCTTTCTTTAACAGAGATCAGCCACAAAGACTTTTTTAACAGAGT
Found at i:26118559 original size:84 final size:85
Alignment explanation
Indices: 26118395--26118571 Score: 266
Period size: 84 Copynumber: 2.1 Consensus size: 85
26118385 ACTCGCCTAT
*
26118395 TCGCCACAAAAGCATCATTTAATAGAAACAGCCACAAAGGCTTTCTTTGACAGAGTCAGCCACAA
1 TCGCCACAAAAGCATCATTTAATAGAAACAGCCACAAAGACTTTCTTTGACAGAGTCAGCCACAA
26118460 AGGCTTTCCTTTAACAGAGA
66 AGGCTTTCCTTTAACAGAGA
* * * * * * * *
26118480 TCGCCACAAAGGCGTCCTTTAATAGAGATAGCCACAAAGACTTT-TTTTATAGAGTCATCCACAA
1 TCGCCACAAAAGCATCATTTAATAGAAACAGCCACAAAGACTTTCTTTGACAGAGTCAGCCACAA
26118544 AGGCTTTCCTTTAACAGAGA
66 AGGCTTTCCTTTAACAGAGA
26118564 TCGCCACA
1 TCGCCACA
26118572 GAGGTGTGCC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 45 0.54
85 38 0.46
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (85 bp):
TCGCCACAAAAGCATCATTTAATAGAAACAGCCACAAAGACTTTCTTTGACAGAGTCAGCCACAA
AGGCTTTCCTTTAACAGAGA
Found at i:26123161 original size:16 final size:16
Alignment explanation
Indices: 26123138--26123209 Score: 101
Period size: 16 Copynumber: 4.5 Consensus size: 16
26123128 CATTTGGTTC
26123138 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
26123154 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
26123170 ACTGTAATAGAATAGA
1 GCTGTAATGGAATAGA
26123186 GCTGTAATGGAATAG-
1 GCTGTAATGGAATAGA
26123201 GACTGTAAT
1 G-CTGTAAT
26123210 CAGTAATTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:26123183 original size:32 final size:32
Alignment explanation
Indices: 26123139--26123209 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
26123129 ATTTGGTTCG
* *
26123139 CTGTAATGGAATAGAGGTGTAATGGAATAGAA
1 CTGTAATAGAATAGAGCTGTAATGGAATAGAA
*
26123171 CTGTAATAGAATAGAGCTGTAATGGAATAGGA
1 CTGTAATAGAATAGAGCTGTAATGGAATAGAA
26123203 CTGTAAT
1 CTGTAAT
26123210 CAGTAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (32 bp):
CTGTAATAGAATAGAGCTGTAATGGAATAGAA
Found at i:26123492 original size:10 final size:10
Alignment explanation
Indices: 26123388--26123502 Score: 71
Period size: 10 Copynumber: 11.6 Consensus size: 10
26123378 ATTATTATTA
26123388 AATATAATTT
1 AATATAATTT
*
26123398 AATAAAAATATT
1 AAT-ATAAT-TT
26123410 AAT-TAATTT
1 AATATAATTT
*
26123419 AATTATATTTT
1 AA-TATAATTT
*
26123430 AACATAA-TT
1 AATATAATTT
*
26123439 -AT-T-ATTA
1 AATATAATTT
*
26123446 AATACAATTT
1 AATATAATTT
* *
26123456 AATA-AAATA
1 AATATAATTT
26123465 ATATATAATTT
1 A-ATATAATTT
*
26123476 AATTATATTTT
1 AA-TATAATTT
26123487 AATATAATTT
1 AATATAATTT
26123497 AATATA
1 AATATA
26123503 TAAAAAATGC
Statistics
Matches: 79, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
6 1 0.01
7 2 0.03
8 3 0.04
9 10 0.13
10 34 0.43
11 24 0.30
12 5 0.06
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
AATATAATTT
Found at i:26123494 original size:57 final size:58
Alignment explanation
Indices: 26123378--26123495 Score: 186
Period size: 57 Copynumber: 2.1 Consensus size: 58
26123368 AATTTTAATG
* *
26123378 ATTATTATTAAATATAATTTAATAAAAATATTAATTAATTTAATTATATTTTAACATA
1 ATTATTATTAAATACAATTTAATAAAAATAATAATTAATTTAATTATATTTTAACATA
*
26123436 ATTATTATTAAATACAATTTAAT-AAAATAAT-ATATAATTTAATTATATTTTAATATA
1 ATTATTATTAAATACAATTTAATAAAAATAATAAT-TAATTTAATTATATTTTAACATA
26123493 ATT
1 ATT
26123496 TAATATATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
56 2 0.04
57 32 0.57
58 22 0.39
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAAATAATAATTAATTTAATTATATTTTAACATA
Found at i:26125216 original size:10 final size:8
Alignment explanation
Indices: 26125193--26125226 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
26125183 ACATATCAAA
26125193 TAATTTTT
1 TAATTTTT
26125201 TAATTTTT
1 TAATTTTT
*
26125209 TAA-TATT
1 TAATTTTT
26125216 TAATTTTT
1 TAATTTTT
26125224 TAA
1 TAA
26125227 CTTGTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TAATTTTT
Found at i:26130000 original size:2 final size:2
Alignment explanation
Indices: 26129936--26129980 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
26129926 ACTGGGAAAA
* *
26129936 AG AG AG AG AG AG AG AG GG GG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
26129978 AG A
1 AG A
26129981 CTAACCAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26131042 original size:18 final size:18
Alignment explanation
Indices: 26131006--26131042 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26130996 ATTAAAATAT
*
26131006 AATTTTTAAAAGATTTAA
1 AATTTTTAAAAGATCTAA
*
26131024 AATTTTTAAATGATCTAA
1 AATTTTTAAAAGATCTAA
26131042 A
1 A
26131043 CGAAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (18 bp):
AATTTTTAAAAGATCTAA
Found at i:26132461 original size:42 final size:42
Alignment explanation
Indices: 26132321--26132463 Score: 164
Period size: 42 Copynumber: 3.4 Consensus size: 42
26132311 AACACACTTC
* * *
26132321 GTGCATCATCAGATA-ACCGAAGT-AATCATACTAGCACGTAA
1 GTGCATCATTAGATATACTGAAGTAAAT-ATACTAACACGTAA
* * * * * *
26132362 GTGCATCATTGGATAAATTGAAGTAAATATGCTGACACATAA
1 GTGCATCATTAGATATACTGAAGTAAATATACTAACACGTAA
* *
26132404 GTGCATCATTGGATATACTGAAGTAAATATACTAACATGTAA
1 GTGCATCATTAGATATACTGAAGTAAATATACTAACACGTAA
26132446 GTGCATCATTAGATATAC
1 GTGCATCATTAGATATAC
26132464 CAAAATAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
41 13 0.15
42 69 0.81
43 3 0.04
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (42 bp):
GTGCATCATTAGATATACTGAAGTAAATATACTAACACGTAA
Found at i:26134733 original size:13 final size:13
Alignment explanation
Indices: 26134715--26134749 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
26134705 AAATTAAAAC
26134715 TTTTAAAAATATT
1 TTTTAAAAATATT
26134728 TTTTAAAAATATT
1 TTTTAAAAATATT
*
26134741 TTTCAAAAA
1 TTTTAAAAA
26134750 CAATATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (13 bp):
TTTTAAAAATATT
Found at i:26143199 original size:10 final size:10
Alignment explanation
Indices: 26143184--26143216 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26143174 TTGAACTAAC
26143184 TTTTTAATAA
1 TTTTTAATAA
26143194 TTTTTAA-AA
1 TTTTTAATAA
26143203 TATTTTAATAA
1 T-TTTTAATAA
26143214 TTT
1 TTT
26143217 CTTTAATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.14
10 15 0.71
11 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:26149108 original size:2 final size:2
Alignment explanation
Indices: 26149101--26149134 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26149091 GATTGAGGCA
26149101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26149135 GTATGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26160354 original size:17 final size:17
Alignment explanation
Indices: 26160332--26160370 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26160322 AAACGAACAG
26160332 GGGAAGAAGAAAG-AAAA
1 GGGAAGAA-AAAGAAAAA
*
26160349 GGGAAGGAAAAGAAAAA
1 GGGAAGAAAAAGAAAAA
26160366 GGGAA
1 GGGAA
26160371 AACTAGGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (17 bp):
GGGAAGAAAAAGAAAAA
Found at i:26174746 original size:13 final size:13
Alignment explanation
Indices: 26174728--26174763 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
26174718 AAAGTCATTT
26174728 CAATTTATTTGTG
1 CAATTTATTTGTG
26174741 CAATTTATTTGTG
1 CAATTTATTTGTG
26174754 -AATTTTATTT
1 CAA-TTTATTT
26174764 AAAGTAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 2 0.09
13 20 0.91
ACGTcount: A:0.25, C:0.06, G:0.11, T:0.58
Consensus pattern (13 bp):
CAATTTATTTGTG
Found at i:26176824 original size:2 final size:2
Alignment explanation
Indices: 26176817--26176858 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
26176807 CACATGCTCG
* *
26176817 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26176859 GCATGACAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26181725 original size:19 final size:19
Alignment explanation
Indices: 26181701--26181744 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26181691 AAATCAAATT
*
26181701 TACATATCATGCAAAAGTA
1 TACATAGCATGCAAAAGTA
* * *
26181720 TACATAGGATTCACAAGTA
1 TACATAGCATGCAAAAGTA
26181739 TACATA
1 TACATA
26181745 ATACAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (19 bp):
TACATAGCATGCAAAAGTA
Found at i:26182189 original size:38 final size:38
Alignment explanation
Indices: 26182137--26182261 Score: 115
Period size: 38 Copynumber: 3.4 Consensus size: 38
26182127 GTGAAATGGC
26182137 TTTTCATCCATTTTTCTTTCTTTTTCAAATCAAATTCAA
1 TTTTCATCCATTTTTC-TTCTTTTTCAAATCAAATTCAA
* *
26182176 TTTTC-TCCCTTTTTC--C---TTCAAAATCAAA-T-AGC
1 TTTTCATCCATTTTTCTTCTTTTTC-AAATCAAATTCA-A
*
26182208 TTTTCATCCATTTTTCCTTCTTTCTCAAATCAAATTCAA
1 TTTTCATCCATTTTT-CTTCTTTTTCAAATCAAATTCAA
*
26182247 TTTTC-TCCCTTTTTC
1 TTTTCATCCATTTTTC
26182262 CTTCAAAATC
Statistics
Matches: 69, Mismatches: 6, Indels: 24
0.70 0.06 0.24
Matches are distributed among these distances:
31 1 0.01
32 9 0.13
33 16 0.23
34 1 0.01
35 1 0.01
36 1 0.01
37 1 0.01
38 25 0.36
39 13 0.19
40 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.01, T:0.51
Consensus pattern (38 bp):
TTTTCATCCATTTTTCTTCTTTTTCAAATCAAATTCAA
Found at i:26182204 original size:33 final size:33
Alignment explanation
Indices: 26182163--26182274 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 33
26182153 TTTCTTTTTC
26182163 AAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
1 AAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
* * *
26182196 AAATCAAA-T-AGCTTTTCATCCATTTTTCCTTCTTTCTC
1 AAATCAAATTCA-ATTTTC-TCCCTTTTT-C--C-TTC-A
26182234 AAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
1 AAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
26182267 AAATCAAA
1 AAATCAAA
26182275 GCAACACCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
31 1 0.02
32 6 0.09
33 24 0.38
34 4 0.06
35 1 0.02
36 1 0.02
37 4 0.06
38 16 0.25
39 6 0.09
40 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.01, T:0.44
Consensus pattern (33 bp):
AAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
Found at i:26182251 original size:71 final size:71
Alignment explanation
Indices: 26182130--26182274 Score: 263
Period size: 71 Copynumber: 2.0 Consensus size: 71
26182120 CACGTGGGTG
* * *
26182130 AAATGGCTTTTCATCCATTTTTCTTTCTTTTTCAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
1 AAATAGCTTTTCATCCATTTTTCCTTCTTTCTCAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
26182195 AAAATC
66 AAAATC
26182201 AAATAGCTTTTCATCCATTTTTCCTTCTTTCTCAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
1 AAATAGCTTTTCATCCATTTTTCCTTCTTTCTCAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
26182266 AAAATC
66 AAAATC
26182272 AAA
1 AAA
26182275 GCAACACCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.02, T:0.47
Consensus pattern (71 bp):
AAATAGCTTTTCATCCATTTTTCCTTCTTTCTCAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
AAAATC
Found at i:26182274 original size:38 final size:38
Alignment explanation
Indices: 26182161--26182274 Score: 123
Period size: 38 Copynumber: 3.1 Consensus size: 38
26182151 TCTTTCTTTT
26182161 TCAAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAA
1 TCAAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAA
* * ****
26182199 TCAAAT---A-GC--TTTTCATCCATTTTTCCTTCTTTC
1 TCAAATCAAATTCAATTTTC-TCCCTTTTTCCTTCAAAA
26182232 TCAAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAA
1 TCAAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAA
26182270 TCAAA
1 TCAAA
26182275 GCAACACCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
32 5 0.09
33 19 0.33
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 24 0.42
39 5 0.09
ACGTcount: A:0.29, C:0.26, G:0.01, T:0.44
Consensus pattern (38 bp):
TCAAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAA
Found at i:26183840 original size:41 final size:40
Alignment explanation
Indices: 26183695--26183926 Score: 136
Period size: 40 Copynumber: 5.8 Consensus size: 40
26183685 GCTTTTGTAG
* * *
26183695 CTTCAATC-TG-CCTCATAGTTAGGGTAAGAGATTGGATTAT
1 CTTCAATCTTGCCCT-AT-GTTAGGGTAAAAGATCGGATGAT
* * * * * *
26183735 CTTCAAT-ATACCCTCTGATTAGGGTAAAAGATTGGGT-TT
1 CTTCAATCTTGCCCTATG-TTAGGGTAAAAGATCGGATGAT
* **
26183774 CTTCAATC-TGCCCCATGATCGGGGTAAAAGATCGGATGAT
1 CTTCAATCTTGCCCTATG-TTAGGGTAAAAGATCGGATGAT
* * * * *
26183814 CTTTAATCTTGCCCTTTAGTTAGGGTAAAAGATTGGGT-TT
1 CTTCAATCTTGCCCTAT-GTTAGGGTAAAAGATCGGATGAT
* * * * * *
26183854 CTTCAATC-TGCCCCATGATCGAGGTAAAAGATCGAACGGT
1 CTTCAATCTTGCCCTATGTTAG-GGTAAAAGATCGGATGAT
*
26183894 CTTCAATCTTGCCCTCTGGTTAGGGTAAAAGAT
1 CTTCAATCTTGCCCTAT-GTTAGGGTAAAAGAT
26183927 TAGATTTCTT
Statistics
Matches: 146, Mismatches: 35, Indels: 21
0.72 0.17 0.10
Matches are distributed among these distances:
38 3 0.02
39 48 0.33
40 51 0.35
41 40 0.27
42 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (40 bp):
CTTCAATCTTGCCCTATGTTAGGGTAAAAGATCGGATGAT
Found at i:26183855 original size:80 final size:80
Alignment explanation
Indices: 26183716--26183971 Score: 345
Period size: 80 Copynumber: 3.2 Consensus size: 80
26183706 CTCATAGTTA
* * * * *
26183716 GGGTAAGAGATTGGATTATCTTCAAT-ATACCCTCT-GATTAGGGTAAAAGATTGGGTTTCTTCA
1 GGGTAAAAGATCGGATGATCTTCAATCTTGCCCTCTAG-TTAGGGTAAAAGATTGGGTTTCTTCA
26183779 ATCTGCCCCATGATCG
65 ATCTGCCCCATGATCG
* *
26183795 GGGTAAAAGATCGGATGATCTTTAATCTTGCCCTTTAGTTAGGGTAAAAGATTGGGTTTCTTCAA
1 GGGTAAAAGATCGGATGATCTTCAATCTTGCCCTCTAGTTAGGGTAAAAGATTGGGTTTCTTCAA
26183860 TCTGCCCCATGATCG
66 TCTGCCCCATGATCG
* * * * * * *
26183875 AGGTAAAAGATCGAACGGTCTTCAATCTTGCCCTCTGGTTAGGGTAAAAGATTAGATTTCTTCAA
1 GGGTAAAAGATCGGATGATCTTCAATCTTGCCCTCTAGTTAGGGTAAAAGATTGGGTTTCTTCAA
*
26183940 TCTGTCCCATGATCG
66 TCTGCCCCATGATCG
*
26183955 GGGTAAAGGATCGGATG
1 GGGTAAAAGATCGGATG
26183972 TTGTTACTTC
Statistics
Matches: 154, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
79 22 0.14
80 131 0.85
81 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (80 bp):
GGGTAAAAGATCGGATGATCTTCAATCTTGCCCTCTAGTTAGGGTAAAAGATTGGGTTTCTTCAA
TCTGCCCCATGATCG
Found at i:26183897 original size:40 final size:38
Alignment explanation
Indices: 26183756--26183967 Score: 112
Period size: 39 Copynumber: 5.3 Consensus size: 38
26183746 CCTCTGATTA
*
26183756 GGGTAAAAGATTG-GGTTTCTTCAATC-TGCCCCATGATC
1 GGGTAAAAGATCGAGG--TCTTCAATCTTGCCCCATGATC
* * ** * *
26183794 GGGGTAAAAGATCGGATGATCTTTAATCTTGCCCTTTAGTTA
1 -GGGTAAAAGATC-GA-GGTCTTCAATCTTGCCCCAT-GATC
*
26183836 GGGTAAAAGATTG-GGTTTCTTCAATC-TGCCCCATGATC
1 GGGTAAAAGATCGAGG--TCTTCAATCTTGCCCCATGATC
* *
26183874 GAGGTAAAAGATCGAACGGTCTTCAATCTTGCCCTC-TGGTTA
1 G-GGTAAAAGATCG-A-GGTCTTCAATCTTGCCC-CAT-GATC
* ** *
26183916 GGGTAAAAGATTAGATTTCTTCAATC-TGTCCCATGATC
1 GGGTAAAAGA-TCGAGGTCTTCAATCTTGCCCCATGATC
*
26183954 GGGGTAAAGGATCG
1 -GGGTAAAAGATCG
26183968 GATGTTGTTA
Statistics
Matches: 131, Mismatches: 25, Indels: 35
0.69 0.13 0.18
Matches are distributed among these distances:
38 9 0.07
39 42 0.32
40 36 0.27
41 33 0.25
42 11 0.08
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (38 bp):
GGGTAAAAGATCGAGGTCTTCAATCTTGCCCCATGATC
Found at i:26184061 original size:50 final size:50
Alignment explanation
Indices: 26184007--26184111 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
26183997 CAGGAGTATA
* * *
26184007 AGATTCGTCCTTATGACTTCAATCTGCCCCTCTACAGCTTTAGGTGAATG
1 AGATTCGTCATTACGACTTCAATCTGCCCCTCTACAACTTTAGGTGAATG
* * ** * *
26184057 AGATTTGTCATTGCGGTTTCATTCTGCCCCTCTACAACTTTAGGTGTATG
1 AGATTCGTCATTACGACTTCAATCTGCCCCTCTACAACTTTAGGTGAATG
26184107 AGATT
1 AGATT
26184112 TGCCTTTGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (50 bp):
AGATTCGTCATTACGACTTCAATCTGCCCCTCTACAACTTTAGGTGAATG
Found at i:26184112 original size:50 final size:50
Alignment explanation
Indices: 26184024--26184128 Score: 156
Period size: 50 Copynumber: 2.1 Consensus size: 50
26184014 TCCTTATGAC
* *
26184024 TTCAATCTGCCCCTCTACAGCTTTAGGTGAATGAGATTTGTCATTGCGGT
1 TTCAATCTGCCCCTCTACAACTTTAGGTGAATGAGATTTGCCATTGCGGT
* * * *
26184074 TTCATTCTGCCCCTCTACAACTTTAGGTGTATGAGATTTGCCTTTGTGGT
1 TTCAATCTGCCCCTCTACAACTTTAGGTGAATGAGATTTGCCATTGCGGT
26184124 TTCAA
1 TTCAA
26184129 CCTATACCTC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (50 bp):
TTCAATCTGCCCCTCTACAACTTTAGGTGAATGAGATTTGCCATTGCGGT
Found at i:26184139 original size:50 final size:50
Alignment explanation
Indices: 26184035--26184150 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 50
26184025 TCAATCTGCC
* ** * *
26184035 CCTCTACAGCTTTAGGTGAATGAGATTTGTCATTGCGGTTTCATTCTGCC
1 CCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGTTTCAACCTACA
* * * * *
26184085 CCTCTACAACTTTAGGTGTATGAGATTTGCCTTTGTGGTTTCAACCTATA
1 CCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGTTTCAACCTACA
*
26184135 CCTCTATAGCTTTAGG
1 CCTCTACAGCTTTAGG
26184151 GGTAAAAGAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (50 bp):
CCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGTTTCAACCTACA
Found at i:26196167 original size:39 final size:38
Alignment explanation
Indices: 26196124--26196238 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 38
26196114 GTGGAATGGC
26196124 TTTTCACCCATTTTTCTTTCTTTTTAAAATCAAATTCAA
1 TTTTCACCCATTTTTC-TTCTTTTTAAAATCAAATTCAA
* * *
26196163 TTTTCTCCC-TTTTTC--C--TTCAAAATCAAATGGC--
1 TTTTCACCCATTTTTCTTCTTTTTAAAATCAAAT-TCAA
* ** *
26196195 TTTTCATCCATTTTTCCTTCTTCCTCAAATCAAATTCAA
1 TTTTCACCCATTTTT-CTTCTTTTTAAAATCAAATTCAA
26196234 TTTTC
1 TTTTC
26196239 TCTCTTTTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
32 7 0.12
33 17 0.30
34 2 0.04
35 1 0.02
36 1 0.02
37 1 0.02
38 15 0.26
39 13 0.23
ACGTcount: A:0.24, C:0.25, G:0.02, T:0.49
Consensus pattern (38 bp):
TTTTCACCCATTTTTCTTCTTTTTAAAATCAAATTCAA
Found at i:26196176 original size:38 final size:37
Alignment explanation
Indices: 26196124--26196248 Score: 91
Period size: 38 Copynumber: 3.4 Consensus size: 37
26196114 GTGGAATGGC
*
26196124 TTTTCACCCATTTTTCTTTCTTTTTAAAATCAAATTCAA
1 TTTTCTCCC-TTTTTC-TTCTTTTTAAAATCAAATTCAA
* *
26196163 TTTTCTCCCTTTTTC--C--TTCAAAATCAAATGGC--
1 TTTTCTCCCTTTTTCTTCTTTTTAAAATCAAAT-TCAA
* ** *
26196195 TTTTCATCCATTTTTCCTTCTTCCTCAAATCAAATTCAA
1 TTTTC-TCCCTTTTT-CTTCTTTTTAAAATCAAATTCAA
*
26196234 TTTTCTCTCTTTTTC
1 TTTTCTCCCTTTTTC
26196249 CTTCAAAATC
Statistics
Matches: 66, Mismatches: 11, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
32 5 0.08
33 20 0.30
34 2 0.03
35 1 0.02
36 1 0.02
37 2 0.03
38 22 0.33
39 13 0.20
ACGTcount: A:0.22, C:0.26, G:0.02, T:0.50
Consensus pattern (37 bp):
TTTTCTCCCTTTTTCTTCTTTTTAAAATCAAATTCAA
Found at i:26196190 original size:33 final size:33
Alignment explanation
Indices: 26196149--26196261 Score: 113
Period size: 33 Copynumber: 3.3 Consensus size: 33
26196139 CTTTCTTTTT
26196149 AAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
1 AAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
* *
26196182 AAAATCAAATGGC--TTTTCATCCATTTTTCCTTCTTCC
1 AAAATCAAAT-TCAATTTTC-TCCCTTTTT-C--CTT-C
* *
26196219 TCAAATCAAATTCAATTTTCTCTCTTTTTCCTTC
1 -AAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
26196253 AAAATCAAA
1 AAAATCAAA
26196262 GCAACACCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
32 5 0.08
33 26 0.41
34 3 0.05
35 3 0.05
36 3 0.05
37 3 0.05
38 16 0.25
39 5 0.08
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.43
Consensus pattern (33 bp):
AAAATCAAATTCAATTTTCTCCCTTTTTCCTTC
Found at i:26196206 original size:71 final size:71
Alignment explanation
Indices: 26196118--26196261 Score: 234
Period size: 71 Copynumber: 2.0 Consensus size: 71
26196108 ACGTGGGTGG
* **
26196118 AATGGCTTTTCACCCATTTTTCTTTCTTTTTAAAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
1 AATGGCTTTTCACCCATTTTTCCTTCTTCCTAAAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
26196183 AAATCA
66 AAATCA
* * *
26196189 AATGGCTTTTCATCCATTTTTCCTTCTTCCTCAAATCAAATTCAATTTTCTCTCTTTTTCCTTCA
1 AATGGCTTTTCACCCATTTTTCCTTCTTCCTAAAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
26196254 AAATCA
66 AAATCA
26196260 AA
1 AA
26196262 GCAACACCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.26, C:0.25, G:0.03, T:0.47
Consensus pattern (71 bp):
AATGGCTTTTCACCCATTTTTCCTTCTTCCTAAAATCAAATTCAATTTTCTCCCTTTTTCCTTCA
AAATCA
Found at i:26196261 original size:38 final size:37
Alignment explanation
Indices: 26196150--26196261 Score: 92
Period size: 38 Copynumber: 3.1 Consensus size: 37
26196140 TTTCTTTTTA
26196150 AAATCAAATTCAATTTTCTCCCTTTTTCCTTCAAAATC
1 AAATCAAATTCAATTTTCT-CCTTTTTCCTTCAAAATC
** ****
26196188 AAAT----GGC--TTTTCATCCATTTTTCCTTCTTCCTC
1 AAATCAAATTCAATTTTC-TCC-TTTTTCCTTCAAAATC
26196221 AAATCAAATTCAATTTTCTCTCTTTTTCCTTCAAAATC
1 AAATCAAATTCAATTTTCTC-CTTTTTCCTTCAAAATC
26196259 AAA
1 AAA
26196262 GCAACACCAT
Statistics
Matches: 53, Mismatches: 12, Indels: 18
0.64 0.14 0.22
Matches are distributed among these distances:
32 7 0.13
33 17 0.32
34 1 0.02
37 1 0.02
38 21 0.40
39 6 0.11
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.44
Consensus pattern (37 bp):
AAATCAAATTCAATTTTCTCCTTTTTCCTTCAAAATC
Found at i:26197118 original size:17 final size:17
Alignment explanation
Indices: 26197075--26197119 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
26197065 GGTTTGTATA
*
26197075 TATTTTTTTAGTTCTAT
1 TATTTTTTTATTTCTAT
*
26197092 TATTTCTTTATTTCT-T
1 TATTTTTTTATTTCTAT
26197108 TATTTATTTTAT
1 TATTT-TTTTAT
26197120 AAATAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (17 bp):
TATTTTTTTATTTCTAT
Found at i:26199574 original size:18 final size:18
Alignment explanation
Indices: 26199553--26199587 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26199543 TAAATACCCG
26199553 AAAATAAAATAATAAGTT
1 AAAATAAAATAATAAGTT
26199571 AAAATAAAATAATAAGT
1 AAAATAAAATAATAAGT
26199588 CTATAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAATAAAATAATAAGTT
Found at i:26200687 original size:18 final size:18
Alignment explanation
Indices: 26200666--26200702 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26200656 CAACATTCAG
* *
26200666 TCAATGGTCAACGGTCGA
1 TCAACGGTCAACGATCGA
26200684 TCAACGGTCAACGATCGA
1 TCAACGGTCAACGATCGA
26200702 T
1 T
26200703 TAATAATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (18 bp):
TCAACGGTCAACGATCGA
Found at i:26200809 original size:16 final size:16
Alignment explanation
Indices: 26200790--26200832 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
26200780 GTTTGGTTTA
*
26200790 ATTTGGGTTTAAGGTT
1 ATTTGGGTTTAAGGGT
**
26200806 ATTTGGGTCAAAGGGT
1 ATTTGGGTTTAAGGGT
26200822 -TTTGGGTTTAA
1 ATTTGGGTTTAA
26200833 AAGAGTTTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (16 bp):
ATTTGGGTTTAAGGGT
Found at i:26207733 original size:21 final size:20
Alignment explanation
Indices: 26207707--26207760 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
26207697 TTAAAAAGTC
*
26207707 AAAATAATATATAAAATTTGA
1 AAAATAATATATAAAAATT-A
26207728 AAAAT-AT-TATAAAAATTA
1 AAAATAATATATAAAAATTA
* *
26207746 AAAAGAATATTTAAA
1 AAAATAATATATAAA
26207761 TTTCAAGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 5 0.18
19 11 0.39
20 7 0.25
21 5 0.18
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAATAATATATAAAAATTA
Found at i:26208112 original size:9 final size:8
Alignment explanation
Indices: 26208091--26208144 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
26208081 TTTTCTCTAA
26208091 ATTTTATAT
1 ATTTT-TAT
26208100 ATTTTTAT
1 ATTTTTAT
26208108 GATTTTT-T
1 -ATTTTTAT
26208116 ATATTTT-T
1 AT-TTTTAT
26208124 ATTTTTAT
1 ATTTTTAT
*
26208132 -TATTTAT
1 ATTTTTAT
26208139 ATTTTT
1 ATTTTT
26208145 TTAAAGTGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
7 12 0.31
8 16 0.41
9 11 0.28
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (8 bp):
ATTTTTAT
Found at i:26208118 original size:18 final size:18
Alignment explanation
Indices: 26208091--26208136 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
26208081 TTTTCTCTAA
26208091 ATTTTATATATTTTTATG
1 ATTTTATATATTTTTATG
*
26208109 ATTTTTTATATTTTTAT-
1 ATTTTATATATTTTTATG
26208126 -TTTTAT-TATTT
1 ATTTTATATATTT
26208137 ATATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 5 0.19
16 5 0.19
18 16 0.62
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
ATTTTATATATTTTTATG
Found at i:26208160 original size:21 final size:21
Alignment explanation
Indices: 26208136--26208194 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
26208126 TTTTATTATT
**
26208136 TATATTTTTTTAAAGTGTATA
1 TATATTTTTTTAAAGAATATA
** *
26208157 TATATTTAATAAAAGAATATA
1 TATATTTTTTTAAAGAATATA
26208178 TATATTTTTTATAAAGA
1 TATATTTTTT-TAAAGA
26208195 TGTCATGTGA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (21 bp):
TATATTTTTTTAAAGAATATA
Found at i:26208830 original size:16 final size:18
Alignment explanation
Indices: 26208791--26208824 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26208781 TAATTTTATA
26208791 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
26208808 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
26208825 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:26213986 original size:18 final size:17
Alignment explanation
Indices: 26213956--26214003 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
26213946 ACAAAATTTT
*
26213956 AAAAATGAGTTTGGATA
1 AAAAATAAGTTTGGATA
**
26213973 AAAAATAAGATTTGTTTAA
1 AAAAATAAG-TTTGGAT-A
26213992 AAAAATAAGTTT
1 AAAAATAAGTTT
26214004 TGGGTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 8 0.31
18 8 0.31
19 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (17 bp):
AAAAATAAGTTTGGATA
Found at i:26214011 original size:19 final size:19
Alignment explanation
Indices: 26213972--26214011 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26213962 GAGTTTGGAT
**
26213972 AAAAAATAAGATTTGTTTA
1 AAAAAATAAGATTTGGGTA
*
26213991 AAAAAATAAGTTTTGGGTA
1 AAAAAATAAGATTTGGGTA
26214010 AA
1 AA
26214012 TTTTTTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.33
Consensus pattern (19 bp):
AAAAAATAAGATTTGGGTA
Found at i:26214239 original size:11 final size:11
Alignment explanation
Indices: 26214223--26214248 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26214213 TATTTAAGTA
26214223 TATTTTTAATT
1 TATTTTTAATT
26214234 TATTTTTAATT
1 TATTTTTAATT
26214245 TATT
1 TATT
26214249 GGAAAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:26214652 original size:4 final size:4
Alignment explanation
Indices: 26214643--26214668 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
26214633 AACATTTCAT
26214643 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
26214669 ATCAGCATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:26216443 original size:28 final size:28
Alignment explanation
Indices: 26216412--26216478 Score: 75
Period size: 30 Copynumber: 2.4 Consensus size: 28
26216402 AGTATATCAA
26216412 ATAATTTTATAATATAAATTTAA-TATTT
1 ATAATTTTATAATA-AAATTTAAGTATTT
*
26216440 ATAAGTTTTTATACTAAAATTTAAGTATTT
1 ATAA--TTTTATAATAAAATTTAAGTATTT
*
26216470 A-ATTTTTAT
1 ATAATTTTAT
26216479 CATTTAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
27 6 0.18
28 4 0.12
29 9 0.26
30 15 0.44
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (28 bp):
ATAATTTTATAATAAAATTTAAGTATTT
Found at i:26217293 original size:31 final size:31
Alignment explanation
Indices: 26217258--26217318 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
26217248 ACATTAAGAT
*
26217258 TTTTTTATATATAA-AATTTTCATAAATATAC
1 TTTTTAATATA-AACAATTTTCATAAATATAC
*
26217289 TTTTTAATATAAACAATTTTCATATATATA
1 TTTTTAATATAAACAATTTTCATAAATATA
26217319 TTATGGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (31 bp):
TTTTTAATATAAACAATTTTCATAAATATAC
Found at i:26222801 original size:21 final size:24
Alignment explanation
Indices: 26222778--26222824 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26222768 GAAAGAAACA
* *
26222778 ATAAAA-ATTTTATATTAATAAAT
1 ATAAAATATATTATACTAATAAAT
26222801 ATAAAATATATTATACTAATAAAT
1 ATAAAATATATTATACTAATAAAT
26222825 GTTAAATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATAAAATATATTATACTAATAAAT
Found at i:26223961 original size:45 final size:45
Alignment explanation
Indices: 26223892--26223989 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
26223882 CATTTCTCAA
26223892 TTTCAATTAAGTAGGTTATATTGATTAGGA-CGTCATCCATATCAC
1 TTTCAATTAAGTAGGTTATATTGATTAGGATC-TCATCCATATCAC
* *
26223937 TTTCCATTAAGTAGGTTATATTGATTAGGATCTCATCTATATCAC
1 TTTCAATTAAGTAGGTTATATTGATTAGGATCTCATCCATATCAC
26223982 TTTTCAAT
1 -TTTCAAT
26223990 AAGAGAATGA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
45 41 0.85
46 7 0.15
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (45 bp):
TTTCAATTAAGTAGGTTATATTGATTAGGATCTCATCCATATCAC
Found at i:26230054 original size:22 final size:21
Alignment explanation
Indices: 26230022--26230062 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
26230012 CAGTAAAATA
*
26230022 AGAAGAGAAAAAGAAGAAGATG
1 AGAAGAAAAAAAGAA-AAGATG
26230044 AGAAGAAAAAAAGAAAAGA
1 AGAAGAAAAAAAGAAAAGA
26230063 AATATTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (21 bp):
AGAAGAAAAAAAGAAAAGATG
Found at i:26230443 original size:27 final size:27
Alignment explanation
Indices: 26230369--26230444 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
26230359 AACATTGCAC
*
26230369 AAATTGTATATAGCATATAATATTACG
1 AAATTGTATATAGTATATAATATTACG
* * * * *
26230396 AAATTGTTTAAAACT-TTTAATATTATG
1 AAATTGTAT-ATAGTATATAATATTACG
26230423 AAATTGTATATAGTATATAATA
1 AAATTGTATATAGTATATAATA
26230445 ATTTAAAATA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
26 3 0.08
27 32 0.86
28 2 0.05
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (27 bp):
AAATTGTATATAGTATATAATATTACG
Found at i:26232668 original size:13 final size:13
Alignment explanation
Indices: 26232650--26232675 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26232640 TCTTTATAAT
26232650 TTATAAAATTTTA
1 TTATAAAATTTTA
26232663 TTATAAAATTTTA
1 TTATAAAATTTTA
26232676 AATTAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATAAAATTTTA
Found at i:26232759 original size:15 final size:17
Alignment explanation
Indices: 26232738--26232778 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
26232728 TAATTTTTTA
26232738 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATAAT
*
26232754 -AAATTATTAAAATAAT
1 AAAATTATAAAAATAAT
26232770 AAAATTATA
1 AAAATTATA
26232779 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Done.