Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 91 of 120
Found at i:26236838 original size:22 final size:22
Alignment explanation
Indices: 26236816--26236858 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
26236806 ATTTTTGTTT
*
26236816 AACACAAACCCAAACCCTTTTTA
1 AACAAAAACCCAAA-CCTTTTTA
*
26236839 AATAAAAACCCAAACCTTTT
1 AACAAAAACCCAAACCTTTT
26236859 GACCCAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
AACAAAAACCCAAACCTTTTTA
Found at i:26244331 original size:23 final size:22
Alignment explanation
Indices: 26244301--26244371 Score: 81
Period size: 21 Copynumber: 3.2 Consensus size: 22
26244291 TTTAGTGTTG
* *
26244301 TTTTTTTACTATTTTAGTTGCT
1 TTTTTTTACTGTTTTAGTTACT
*
26244323 ATTTTTTTACTGTTTT-GGTACT
1 -TTTTTTTACTGTTTTAGTTACT
*
26244345 TTTTTTCACTGTTTTAGTTACT
1 TTTTTTTACTGTTTTAGTTACT
*
26244367 GTTTT
1 TTTTT
26244372 GATGTTGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
21 14 0.34
22 13 0.32
23 14 0.34
ACGTcount: A:0.13, C:0.10, G:0.11, T:0.66
Consensus pattern (22 bp):
TTTTTTTACTGTTTTAGTTACT
Found at i:26244348 original size:21 final size:23
Alignment explanation
Indices: 26244301--26244371 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
26244291 TTTAGTGTTG
* * *
26244301 TTTTTTTACTATTTTAGTTGCTA
1 TTTTTTTACTGTTTTAGGTACTA
26244324 TTTTTTTACTGTTTT-GGTACT-
1 TTTTTTTACTGTTTTAGGTACTA
* * *
26244345 TTTTTTCACTGTTTTAGTTACTG
1 TTTTTTTACTGTTTTAGGTACTA
26244368 TTTT
1 TTTT
26244372 GATGTTGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 14 0.34
22 9 0.22
23 18 0.44
ACGTcount: A:0.13, C:0.10, G:0.11, T:0.66
Consensus pattern (23 bp):
TTTTTTTACTGTTTTAGGTACTA
Found at i:26244367 original size:12 final size:11
Alignment explanation
Indices: 26244299--26244372 Score: 53
Period size: 11 Copynumber: 6.6 Consensus size: 11
26244289 GTTTTAGTGT
*
26244299 TGTTTTTTTAC
1 TGTTTTGTTAC
* *
26244310 TATTTTAGTTGC
1 TGTTTT-GTTAC
* *
26244322 TATTTTTTTAC
1 TGTTTTGTTAC
*
26244333 TGTTTTGGTAC
1 TGTTTTGTTAC
26244344 T-TTTT-TTCAC
1 TGTTTTGTT-AC
26244354 TGTTTTAGTTAC
1 TGTTTT-GTTAC
26244366 TGTTTTG
1 TGTTTTG
26244373 ATGTTGTTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
9 1 0.02
10 7 0.14
11 22 0.45
12 17 0.35
13 2 0.04
ACGTcount: A:0.12, C:0.09, G:0.14, T:0.65
Consensus pattern (11 bp):
TGTTTTGTTAC
Found at i:26244434 original size:24 final size:23
Alignment explanation
Indices: 26244410--26244496 Score: 88
Period size: 24 Copynumber: 3.8 Consensus size: 23
26244400 TTAATGTTGT
*
26244410 TTTTATTGTTATTTTTGTTGCTG
1 TTTTGTTGTTATTTTTGTTGCTG
* * *
26244433 -TTTG-TGTTGTTTTTGTAGTTG
1 TTTTGTTGTTATTTTTGTTGCTG
*
26244454 TTTTGTTGTTATTTTTTGCTGCTG
1 TTTTGTTGTTA-TTTTTGTTGCTG
*
26244478 TTTTGGTTATTATTTTTGT
1 TTTT-GTTGTTATTTTTGT
26244497 GTTTGAATGT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
21 14 0.28
22 7 0.14
23 4 0.08
24 19 0.38
25 6 0.12
ACGTcount: A:0.07, C:0.03, G:0.21, T:0.69
Consensus pattern (23 bp):
TTTTGTTGTTATTTTTGTTGCTG
Found at i:26244500 original size:44 final size:44
Alignment explanation
Indices: 26244404--26244514 Score: 106
Period size: 44 Copynumber: 2.5 Consensus size: 44
26244394 ACTGTTTTAA
* * *
26244404 TGTTGT-TTTTATTGTTA-TTTTTGTTGCTGTTTGTGTTGTTTT
1 TGTTGTGTTTTGTTGTTATTTTTTGCTGCTGTTTGTGTTATTTT
*
26244446 TGTAGTTGTTTTGTTGTTATTTTTTGCTGCTGTTT-TGGTTATTATT
1 TGTTG-TGTTTTGTTGTTATTTTTTGCTGCTGTTTGT-GTTATT-TT
*
26244492 T-TTGTG-TTTGAATGTTATTTTTT
1 TGTTGTGTTTTG-TTGTTATTTTTT
26244515 ATGTGTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
42 4 0.07
43 5 0.09
44 24 0.42
45 21 0.37
46 3 0.05
ACGTcount: A:0.08, C:0.03, G:0.21, T:0.68
Consensus pattern (44 bp):
TGTTGTGTTTTGTTGTTATTTTTTGCTGCTGTTTGTGTTATTTT
Found at i:26245773 original size:23 final size:22
Alignment explanation
Indices: 26245722--26245774 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 22
26245712 TGTATATTAG
*
26245722 ATTAAAAAATAAATTATTTTTTT
1 ATTAAAAAAT-AATTATTTTATT
26245745 ATTTAAAAAAT-ATCTATTTATATT
1 A-TTAAAAAATAAT-TATTT-TATT
26245769 ATTAAA
1 ATTAAA
26245775 CGCTGACGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 2 0.08
23 11 0.42
24 13 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTAAAAAATAATTATTTTATT
Found at i:26250081 original size:24 final size:24
Alignment explanation
Indices: 26250047--26250095 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
26250037 TGGATTTTTT
* *
26250047 ATGCTCTCTACAAACAGTAAGACA
1 ATGCTCCCTACAAACAGTAACACA
*
26250071 ATGCTCCCTACAAAGAGTAACACA
1 ATGCTCCCTACAAACAGTAACACA
26250095 A
1 A
26250096 CCCCTTCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.18
Consensus pattern (24 bp):
ATGCTCCCTACAAACAGTAACACA
Found at i:26256706 original size:61 final size:60
Alignment explanation
Indices: 26256617--26256797 Score: 197
Period size: 61 Copynumber: 3.0 Consensus size: 60
26256607 AAAAAATTGG
** * * *
26256617 GGTGTTGGCCATGTAATGGTCGACACCCCCTTTTTGTC-A-AAAAAAATTTTTAAATTTTTTT
1 GGTGTTGGCCATCAAATGATCGACA-CCCC-TTTTCTCGAGAAAAAAA-TTTAAAATTTTTTT
* *
26256678 GGTGTTGGCCATCAAATTATCGATACCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTT
1 GGTGTTGGCCATCAAATGATCGACACCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTT
* ** *
26256738 AGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTCGAGAAAAAAAATTT-AAATTTTTT
1 GGTGTTGGCCATCAAATGATCGACA-CCCCTTTTCTCGAG-AAAAAAATTTAAAATTTTTT
26256798 GATAGCCAAC
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
59 6 0.06
60 38 0.37
61 49 0.48
62 10 0.10
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (60 bp):
GGTGTTGGCCATCAAATGATCGACACCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTT
Found at i:26256736 original size:60 final size:61
Alignment explanation
Indices: 26256655--26256797 Score: 191
Period size: 60 Copynumber: 2.3 Consensus size: 61
26256645 CCTTTTTGTC
* * * * *
26256655 AAAAAAAATTTTTAAATTTTTTTGGTGTTGGCCATCAAATTATCGATA-CCCCTTTTCTCGAG
1 AAAAAAAA--TTTAAATTTTTTTAGTGTTGGCCATCAAATGACCGACACCCCCTATTCTCGAG
*
26256717 -AAAAAAATTTAAAATTTTTTTAGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTCGAG
1 AAAAAAAATTT-AAATTTTTTTAGTGTTGGCCATCAAATGACCGACACCCCCTATTCTCGAG
26256778 AAAAAAAATTTAAATTTTTT
1 AAAAAAAATTTAAATTTTTT
26256798 GATAGCCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
59 3 0.04
60 30 0.42
61 29 0.40
62 10 0.14
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (61 bp):
AAAAAAAATTTAAATTTTTTTAGTGTTGGCCATCAAATGACCGACACCCCCTATTCTCGAG
Found at i:26256889 original size:106 final size:108
Alignment explanation
Indices: 26256703--26256904 Score: 311
Period size: 106 Copynumber: 1.9 Consensus size: 108
26256693 ATTATCGATA
*
26256703 CCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTTAGTGTTGGCCATCAAATGGCCGACACCCCC
1 CCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTTAGTGTCGGCCATCAAATGGCCGACACCCCC
*
26256768 TATTCTCGAGAAAAAAAATT-TAAATTTTTTGATAGCCAACAC
66 TATTCTCGAGAAAAAAAATTCCAAATTTTTTGATAGCCAACAC
* * *
26256810 CCCCTTTTCTCGAGAAAATAA-TTCAAATTTTTTTGGTGTCGGCCATCAAATGGCCGACACCCCC
1 CCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTTAGTGTCGGCCATCAAATGGCCGACACCCCC
* *
26256874 TTTTTTCGA-ATAAAAAAATTCCAAATTTTTT
66 TATTCTCGAGA-AAAAAAATTCCAAATTTTTT
26256905 TGGTGTTGGT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
105 1 0.01
106 56 0.65
107 29 0.34
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (108 bp):
CCCCTTTTCTCGAGAAAAAAATTTAAAATTTTTTTAGTGTCGGCCATCAAATGGCCGACACCCCC
TATTCTCGAGAAAAAAAATTCCAAATTTTTTGATAGCCAACAC
Found at i:26256901 original size:62 final size:60
Alignment explanation
Indices: 26256806--26256932 Score: 191
Period size: 62 Copynumber: 2.1 Consensus size: 60
26256796 TTGATAGCCA
*
26256806 ACACCCCCTTTTCTCGAGAAAATAATTCAAATTTTTTTGGTGTCGGCCATCAAATGGCCG
1 ACACCCCCTTTTCTCGAGAAAAAAATTCAAATTTTTTTGGTGTCGGCCATCAAATGGCCG
* * * *
26256866 ACACCCCCTTTTTTCGAATAAAAAAATTCCAAATTTTTTTGGTGTTGGTCATCAAATGGCCG
1 ACACCCCCTTTTCTCG-AGAAAAAAATT-CAAATTTTTTTGGTGTCGGCCATCAAATGGCCG
26256928 ACACC
1 ACACC
26256933 AACTTCTCCT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 15 0.25
61 9 0.15
62 36 0.60
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (60 bp):
ACACCCCCTTTTCTCGAGAAAAAAATTCAAATTTTTTTGGTGTCGGCCATCAAATGGCCG
Found at i:26260331 original size:11 final size:12
Alignment explanation
Indices: 26260291--26260339 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
26260281 TATTTGTGTA
26260291 AAAATTAATTTG
1 AAAATTAATTTG
26260303 AAAATTAATTTAAG
1 AAAATTAATTT--G
*
26260317 TTGAAATTAATTTG
1 --AAAATTAATTTG
26260331 AAAATTAAT
1 AAAATTAAT
26260340 GAACATGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 19 0.61
14 2 0.06
16 10 0.32
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (12 bp):
AAAATTAATTTG
Found at i:26260694 original size:83 final size:83
Alignment explanation
Indices: 26260471--26260973 Score: 696
Period size: 83 Copynumber: 6.1 Consensus size: 83
26260461 AAAAAGATAG
* * * * * * *
26260471 TTATTATATTACAATTTATATCAAATATTGTATTAATTTGACAATATATTATTTATCAAATTTTC
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTAT-TAATTTT-
* *
26260536 ATA--TTTAAAGTACAAATTA
64 ATATCTTTAAA-TAAAAATTT
* *
26260555 TTATTATATTATAATTTTTATC-----ATGTATTGATTTGACAATATAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
**
26260615 ATCTTTAAATAAATTTTT
66 ATCTTTAAATAAAAATTT
* *
26260633 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
*
26260698 ATTTTTAAATAAAAATTT
66 ATCTTTAAATAAAAATTT
* *
26260716 TTATTATATTACAATTTTTATAATATAATGTATTGATTTGACAATACAGTATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
26260781 ATCTTTAAATAAAAATTT
66 ATCTTTAAATAAAAATTT
* * * *
26260799 TTATTATATTATAATTTTTATCATATAATGTGTTGATTTTATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
26260864 ATCTTTAAATAAAAATTT
66 ATCTTTAAATAAAAATTT
* *
26260882 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
* *
26260947 ATTTTTAAATAAAATTTT
66 ATCTTTAAATAAAAATTT
26260965 TTATTATAT
1 TTATTATAT
26260974 AATGTATTGA
Statistics
Matches: 380, Mismatches: 32, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
77 3 0.01
78 32 0.08
79 32 0.08
83 293 0.77
84 20 0.05
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (83 bp):
TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
ATCTTTAAATAAAAATTT
Found at i:26260771 original size:166 final size:166
Alignment explanation
Indices: 26260471--26261553 Score: 1604
Period size: 166 Copynumber: 6.7 Consensus size: 166
26260461 AAAAAGATAG
* * * * * * * *
26260471 TTATTATATTACAATTTATATCAAATATTGTATTAATTTGACAATATATTATTTATCAAATTTTC
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTAT-TAATTTT-
* * * *
26260536 ATA--TTTAAAGTACAAATTATTATTATATTATAATTTTTATC-----ATGTATTGATTTGACAA
64 ATATCTTTAAA-TAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAA
* *
26260594 TATAATATTTATTAATTTTATATCTTTAAATAAATTTTT
128 TACAATATTTATTAATTTTATATCTTTAAATAAAATTTT
*
26260633 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
* * *
26260698 ATTTTTAAATAAAAATTTTTATTATATTACAATTTTTATAATATAATGTATTGATTTGACAATAC
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
* *
26260763 AGTATTTATTAATTTTATATCTTTAAATAAAAATTT
131 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
* * *
26260799 TTATTATATTATAATTTTTATCATATAATGTGTTGATTTTATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
*
26260864 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAATAC
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
*
26260929 AATATTTATTAATTTTATATTTTTAAATAAAA----
131 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
*
26260961 -T-TT-T-TT---A----T-T-ATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
*
26261013 ATCTTTAAATAAAAAATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
*
26261078 AATATTTATTAATTTTATATCTTCAAATAAAATTTT
131 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
*
26261114 TTATTATATTACAATTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
26261179 ATCTTTAAATAAAAA-TTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
* **
26261243 AATATTTATTAATTTTATATCTTCAAATAAAAAATT
131 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
*
26261279 TTATTATATTACAATTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
* *
26261344 ATCTTTAAATAAAATTTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACAATAC
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
26261409 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
131 AATATTTATTAATTTTATATCTTTAAATAAAATTTT
* *
26261445 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAATAAAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
** *
26261510 ATCTTTAAATAAATTTTTTTATTATATTATAATTTTTATCATAT
66 ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATAT
26261554 TTTATATTTA
Statistics
Matches: 851, Mismatches: 45, Indels: 46
0.90 0.05 0.05
Matches are distributed among these distances:
149 133 0.16
150 1 0.00
151 1 0.00
154 1 0.00
155 3 0.00
156 1 0.00
157 2 0.00
158 2 0.00
159 1 0.00
160 6 0.01
161 34 0.04
162 54 0.06
164 1 0.00
165 163 0.19
166 448 0.53
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (166 bp):
TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
ATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
AATATTTATTAATTTTATATCTTTAAATAAAATTTT
Found at i:26260968 original size:31 final size:30
Alignment explanation
Indices: 26260924--26261036 Score: 82
Period size: 31 Copynumber: 3.5 Consensus size: 30
26260914 TTGATTTGAT
* *
26260924 AATACAATATTTATTAATTTTATATTTTTA
1 AATAAAATTTTTATTAATTTTATATTTTTA
** *
26260954 AATAAAATTTTTTATTATATAATGTATTGATTTGA
1 AATAAAA-TTTTTATTA-ATTTTATATT--TTT-A
* * *
26260989 CAATACAATATTTATTAATTTTATATCTTTA
1 -AATAAAATTTTTATTAATTTTATATTTTTA
*
26261020 AATAAAAAATTTTATTA
1 AAT-AAAATTTTTATTA
26261037 TATTACAATT
Statistics
Matches: 62, Mismatches: 14, Indels: 13
0.70 0.16 0.15
Matches are distributed among these distances:
30 9 0.15
31 19 0.31
32 10 0.16
34 9 0.15
35 9 0.15
36 6 0.10
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (30 bp):
AATAAAATTTTTATTAATTTTATATTTTTA
Found at i:26261033 original size:66 final size:66
Alignment explanation
Indices: 26260897--26261039 Score: 232
Period size: 66 Copynumber: 2.2 Consensus size: 66
26260887 ATATTACAAT
* * * * *
26260897 TTTTATCATATAATGTGTTGATTTGATAATACAATATTTATTAATTTTATATTTTTAAATAAAAT
1 TTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
*
26260962 T
66 A
26260963 TTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
1 TTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
26261028 A
66 A
26261029 TTTTATTATAT
1 TTTTATTATAT
26261040 TACAATTTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (66 bp):
TTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
A
Found at i:26261049 original size:83 final size:83
Alignment explanation
Indices: 26260962--26261553 Score: 1033
Period size: 83 Copynumber: 7.1 Consensus size: 83
26260952 TAAATAAAAT
* *
26260962 TTTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
**
26261027 AATTTTATTATATTACAA
66 TTTTTTATTATATTACAA
*
26261045 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
26261110 TTTTTTATTATATTACAA
66 TTTTTTATTATATTACAA
*
26261128 TTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
*
26261193 -ATTTTATTATATTACAA
66 TTTTTTATTATATTACAA
*
26261210 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
**
26261275 AATTTTATTATATTACAA
66 TTTTTTATTATATTACAA
*
26261293 TTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
26261358 TTTTTTATTATATTACAA
66 TTTTTTATTATATTACAA
*
26261376 TTTTTATCATATAATGTGTTGATTTAACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
26261441 TTTTTTATTATATTACAA
66 TTTTTTATTATATTACAA
* * *
26261459 TTTTTATCATATAATGTGTTGATTTGATAATAAAATATTTATTAATTTTATATCTTTAAATAAAT
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
*
26261524 TTTTTTATTATATTATAA
66 TTTTTTATTATATTACAA
26261542 TTTTTATCATAT
1 TTTTTATCATAT
26261554 TTTATATTTA
Statistics
Matches: 487, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
82 79 0.16
83 408 0.84
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (83 bp):
TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
TTTTTTATTATATTACAA
Found at i:26261236 original size:248 final size:249
Alignment explanation
Indices: 26260962--26261553 Score: 1051
Period size: 248 Copynumber: 2.4 Consensus size: 249
26260952 TAAATAAAAT
* *
26260962 TTTTTATTATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
26261027 AATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATT
66 AATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATT
*
26261092 TTATATCTTCAAATAAAATTTTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTGACA
131 TTATATCTTCAAATAAAATTTTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTAACA
26261157 ATACAATATTTATTAATTTTATATCTTTAAATAAAA-ATTTTATTATATTACAA
196 ATACAATATTTATTAATTTTATATCTTTAAATAAAATATTTTATTATATTACAA
*
26261210 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAA
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
*
26261275 AATTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATT
66 AATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATT
* *
26261340 TTATATCTTTAAATAAAATTTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACA
131 TTATATCTTCAAATAAAATTTTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTAACA
*
26261405 ATACAATATTTATTAATTTTATATCTTTAAATAAAATTTTTTATTATATTACAA
196 ATACAATATTTATTAATTTTATATCTTTAAATAAAATATTTTATTATATTACAA
* * *
26261459 TTTTTATCATATAATGTGTTGATTTGATAATAAAATATTTATTAATTTTATATCTTTAAATAAAT
1 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
** *
26261524 TTTTTTATTATATTATAATTTTTATCATAT
66 AATTTTATTATATTACAATTTTTATCATAT
26261554 TTTATATTTA
Statistics
Matches: 327, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
248 224 0.69
249 103 0.31
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (249 bp):
TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAA
AATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATT
TTATATCTTCAAATAAAATTTTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTAACA
ATACAATATTTATTAATTTTATATCTTTAAATAAAATATTTTATTATATTACAA
Found at i:26261459 original size:563 final size:560
Alignment explanation
Indices: 26260471--26261536 Score: 1764
Period size: 563 Copynumber: 1.9 Consensus size: 560
26260461 AAAAAGATAG
* * *
26260471 TTATTATATTACAATTTATATCAAATATTGTATTAATTTGACAATATATTATTTATCAAATTTTC
1 TTATTATATTACAATTTATATCAAATAATGTATTAATTTGACAATACAATATTTATCAAATTTTC
* * *
26260536 ATATTTAAAGTACAAATTATTATTATATTATAATTTTTATCATGTATTGATTTGACAATATAATA
66 ATATTTAAAGTACAAATTATTATTATATTACAATTTTTATAATGTATTGATTTGACAATACAATA
**
26260601 TTTATTAATTTTATATCTTTAAATAAATTTTTTTATTATATTACAATTTTTATCATATAATGTGT
131 TTTATTAATTTTATATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATATAATGTGT
* * * *
26260666 TGATTTGATAATACAATATTTATTAATTTTATATTTTTAAATAAAAATTTTTATTATATTACAAT
196 TGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAAAATTTTATTATATTACAAT
*
26260731 TTTTATAATATAATGTATTGATTTGACAATACAGTATTTATTAATTTTATATCTTTAAATAAAAA
261 TTTTATAATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
* * *
26260796 TTTTTATTATATTATAATTTTTATCATATAATGTGTTGATTTTATAATACAATATTTATTAATTT
326 TTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACAATACAATATTTATTAATTT
26260861 TATATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAA
391 TATATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAA
* *
26260926 TACAATATTTATTAATTTTATATTTTTAAATAAAATTTTTTATTATATAATGTATTGATTTGACA
456 TAAAATATTTATTAATTTTATATCTTTAAATAAAATTTTTTATTATATAATGTATTGATTTGACA
26260991 ATACAATATTTATTAATTTTATATCTTTAAATAAAAAATT
521 ATACAATATTTATTAATTTTATATCTTTAAATAAAAAATT
* * * * *
26261031 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTAT-TAATTTT-
1 TTATTATATTACAATTTATATCAAATAATGTATTAATTTGACAATACAATATTTATCAAATTTTC
* *
26261094 ATATCTTCAAA-TA-AAATTTTTTATTATATTACAATTTTTATAATATAATGTGTTGATTTGACA
66 ATAT-TT-AAAGTACAAA-TTATTATTATATTACAA--TTT-T--TATAATGTATTGATTTGACA
26261157 ATACAATATTTATTAATTTTATATCTTTAAATAAA-AATTTTATTATATTACAATTTTTATCATA
123 ATACAATATTTATTAATTTTATATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATA
26261221 TAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAAAATTTTATTAT
188 TAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAAAATTTTATTAT
*
26261286 ATTACAATTTTTATAATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTATATCTTTA
253 ATTACAATTTTTATAATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTA
*
26261351 AATAAAATTTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACAATACAATATTT
318 AATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACAATACAATATTT
*
26261416 ATTAATTTTATATCTTTAAATAAAATTTTTTATTATATTACAATTTTTATCATATAATGTGTTGA
383 ATTAATTTTATATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGA
*
26261481 TTTGATAATAAAATATTTATTAATTTTATATCTTTAAATAAATTTTTTTATTATAT
448 TTTGATAATAAAATATTTATTAATTTTATATCTTTAAATAAAATTTTTTATTATAT
26261537 TATAATTTTT
Statistics
Matches: 469, Mismatches: 29, Indels: 13
0.92 0.06 0.03
Matches are distributed among these distances:
558 7 0.01
559 25 0.05
560 52 0.11
561 3 0.01
562 1 0.00
563 329 0.70
564 52 0.11
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (560 bp):
TTATTATATTACAATTTATATCAAATAATGTATTAATTTGACAATACAATATTTATCAAATTTTC
ATATTTAAAGTACAAATTATTATTATATTACAATTTTTATAATGTATTGATTTGACAATACAATA
TTTATTAATTTTATATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATATAATGTGT
TGATTTGACAATACAATATTTATTAATTTTATATCTTCAAATAAAAAATTTTATTATATTACAAT
TTTTATAATATAATGTATTGATTTGACAATACAATATTTATTAATTTTATATCTTTAAATAAAAA
TTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTAACAATACAATATTTATTAATTT
TATATCTTTAAATAAAAATTTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGATAA
TAAAATATTTATTAATTTTATATCTTTAAATAAAATTTTTTATTATATAATGTATTGATTTGACA
ATACAATATTTATTAATTTTATATCTTTAAATAAAAAATT
Found at i:26261763 original size:20 final size:19
Alignment explanation
Indices: 26261717--26261773 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
26261707 GTTCAAAGAT
*
26261717 CGCCGTTGACGACGGTTGAC
1 CGCCGTTGACGAC-TTTGAC
* *
26261737 CGTCGTTGACCGACTTTGTC
1 CGCCGTTGA-CGACTTTGAC
26261757 CGCCGTTGATCGACTTT
1 CGCCGTTGA-CGACTTT
26261774 CATCCATCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.12, C:0.30, G:0.28, T:0.30
Consensus pattern (19 bp):
CGCCGTTGACGACTTTGAC
Found at i:26264010 original size:30 final size:30
Alignment explanation
Indices: 26263958--26264055 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
26263948 TCCCTTTACT
*
26263958 TTTTAAATTTAATTTGTAATTTCGTT-TTTA
1 TTTTAAATTTAATTTGTAATTTC-TTGTATA
*
26263988 TTTTAAATTTAATTTCG-GATTTCTTGTATA
1 TTTTAAATTTAATTT-GTAATTTCTTGTATA
* ** * *
26264018 TTTTAATTTTTCTTTCTAATTTCATGTATA
1 TTTTAAATTTAATTTGTAATTTCTTGTATA
*
26264048 TTCTAAAT
1 TTTTAAAT
26264056 ATTATTTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
29 2 0.04
30 52 0.95
31 1 0.02
ACGTcount: A:0.27, C:0.07, G:0.06, T:0.60
Consensus pattern (30 bp):
TTTTAAATTTAATTTGTAATTTCTTGTATA
Found at i:26265118 original size:122 final size:120
Alignment explanation
Indices: 26264940--26265161 Score: 322
Period size: 122 Copynumber: 1.8 Consensus size: 120
26264930 TCCGAGGAAA
* *
26264940 ATGGCCAACACAAAAAAATTGAATTTTTTTCTCGAAAAAAAGGGAGTGTCGGCCATTTG-ATGAC
1 ATGGCCAACACAAAAAAATTAAATTTTTTTCTCGAAAAAAAGGGAGTGTCGACCA-TTGCATGAC
* *
26265004 CAACACCCAAAAAATTTAAAAATTTTTTCTCGAGAACAGGGGGTGTCGCCCATTTG
65 CAACACCAAAAAAATTTAAAAATTTTTTCTCAAGAACAGGGGGTGTCGCCCATTTG
*
26265060 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCG-AAAAAAGGGGGTGTCGACCATTGCATG
1 ATGGCCAACA-CAAAAAAA-TT-AAATTTTTTTCTCGAAAAAAAGGGAGTGTCGACCATTGCATG
* * *
26265124 GCCAACACCAAAAAAATTTGAAACTTTTTTCTCAAGAA
63 ACCAACACCAAAAAAATTTAAAAATTTTTTCTCAAGAA
26265162 ATAGGGCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
120 10 0.11
121 11 0.12
122 56 0.62
123 13 0.14
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (120 bp):
ATGGCCAACACAAAAAAATTAAATTTTTTTCTCGAAAAAAAGGGAGTGTCGACCATTGCATGACC
AACACCAAAAAAATTTAAAAATTTTTTCTCAAGAACAGGGGGTGTCGCCCATTTG
Found at i:26265153 original size:61 final size:61
Alignment explanation
Indices: 26264940--26265156 Score: 289
Period size: 61 Copynumber: 3.6 Consensus size: 61
26264930 TCCGAGGAAA
* * *
26264940 ATGGCCAACA-CAAAAAAA-TT-GAATTTTTTTCTCGAAAAAAAGGGAGTGTCGGCCATTTG
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCG-AAAAAAGGGGGTGTCGACCATTTG
* * * * * *
26264999 ATGACCAACACCCAAAAAATTTAAAAATTTTTTCTCGAGAACAGGGGGTGTCGCCCATTTG
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCGAAAAAAGGGGGTGTCGACCATTTG
26265060 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCGAAAAAAGGGGGTGTCGACCA-TTG
1 ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCGAAAAAAGGGGGTGTCGACCATTTG
* *
26265120 CATGGCCAACACCAAAAAAATTTGAAACTTTTTTCTC
1 -ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTC
26265157 AAGAAATAGG
Statistics
Matches: 138, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
59 9 0.07
60 10 0.07
61 107 0.78
62 12 0.09
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (61 bp):
ATGGCCAACACCAAAAAAATTTAAAATTTTTTTCTCGAAAAAAGGGGGTGTCGACCATTTG
Found at i:26265241 original size:43 final size:44
Alignment explanation
Indices: 26265159--26265243 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 44
26265149 TTTTTCTCAA
* *
26265159 GAAATAGGGCATGGCCGACACCCAAAAAATACAATTTTTTTTTT
1 GAAATAGGGCATGACCAACACCCAAAAAATACAATTTTTTTTTT
**
26265203 GAAATAGGGCATGACCAACA-CCAAAAAATGTAATTTTTTTT
1 GAAATAGGGCATGACCAACACCCAAAAAATACAATTTTTTTT
26265244 AAATAGGGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 19 0.51
44 18 0.49
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (44 bp):
GAAATAGGGCATGACCAACACCCAAAAAATACAATTTTTTTTTT
Found at i:26265352 original size:18 final size:19
Alignment explanation
Indices: 26265321--26265360 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
26265311 GGGTGTCGGC
26265321 TATGCAATTTTTTTTTTCA
1 TATGCAATTTTTTTTTTCA
26265340 TATGCAA-TTTTTTTTTCA
1 TATGCAATTTTTTTTTTCA
26265358 TAT
1 TAT
26265361 TTTCGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (19 bp):
TATGCAATTTTTTTTTTCA
Found at i:26270460 original size:37 final size:37
Alignment explanation
Indices: 26270408--26270480 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
26270398 AGCATTTTAA
*
26270408 TTTTAATTCAGTTATTCAAC-TTTAAAAAAGTAACAAG
1 TTTTAATTCAATTATTCAACTTTTAAAAAA-TAACAAG
* *
26270445 TTTTAATTTAATTATTTAACTTTTAAAAAATAACAA
1 TTTTAATTCAATTATTCAACTTTTAAAAAATAACAA
26270481 AACAATTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 23 0.72
38 9 0.28
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.42
Consensus pattern (37 bp):
TTTTAATTCAATTATTCAACTTTTAAAAAATAACAAG
Found at i:26270843 original size:147 final size:148
Alignment explanation
Indices: 26270576--26270883 Score: 564
Period size: 147 Copynumber: 2.1 Consensus size: 148
26270566 AAAGAAAAAG
26270576 CCCAGATCTGAAAAAGAAAAACAGTGGGCGAGATAAAGATGAAAGGGGAGACCCAGATCTGAAAG
1 CCCAGATCTGAAAAAGAAAAACAGTGGGCGAGATAAAGATGAAAGGGGAGACCCAGATCTGAAAG
* * *
26270641 CTCTACACCATTTCTTTAACTTGAACTATTTGGCTAAAACCAAAAAGAAAAAGAACATT-GGGAA
66 CTCTACACCATTTCGTCAACTTGAACTATTTGGCTAAAACAAAAAAGAAAAAGAACATTGGGGAA
26270705 TAAAAGATAAAGGGGAAA
131 TAAAAGATAAAGGGGAAA
26270723 CCCAGATCTGAAAAAGAAAAACAGTGGGCGAGATAAAGATGAAAGGGGAGACCCAGATCTGAAAG
1 CCCAGATCTGAAAAAGAAAAACAGTGGGCGAGATAAAGATGAAAGGGGAGACCCAGATCTGAAAG
*
26270788 CTCTACACCATTTCGTCAACTTGAACTATTTGGCTAAAAGAAAAAAGAAAAAGAACATTGGGGAA
66 CTCTACACCATTTCGTCAACTTGAACTATTTGGCTAAAACAAAAAAGAAAAAGAACATTGGGGAA
*
26270853 TAAAAGATAAAGGGGGAA
131 TAAAAGATAAAGGGGAAA
26270871 CCCAGATCTGAAA
1 CCCAGATCTGAAA
26270884 GTTCTTTTTG
Statistics
Matches: 155, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
147 120 0.77
148 35 0.23
ACGTcount: A:0.45, C:0.15, G:0.23, T:0.17
Consensus pattern (148 bp):
CCCAGATCTGAAAAAGAAAAACAGTGGGCGAGATAAAGATGAAAGGGGAGACCCAGATCTGAAAG
CTCTACACCATTTCGTCAACTTGAACTATTTGGCTAAAACAAAAAAGAAAAAGAACATTGGGGAA
TAAAAGATAAAGGGGAAA
Found at i:26273616 original size:27 final size:27
Alignment explanation
Indices: 26273412--26273643 Score: 250
Period size: 27 Copynumber: 8.6 Consensus size: 27
26273402 CCATAACCCC
* * *
26273412 CAGCAATTCG-ACTACTGTCCTACCCAG
1 CAGCAATTCGAAC-ACCGGCCTACCCAA
* *
26273439 CAGCAATTCGATCACTGGCCTACCCAA
1 CAGCAATTCGAACACCGGCCTACCCAA
*
26273466 CAGCAATTCGATCACCGGCCTACCCAA
1 CAGCAATTCGAACACCGGCCTACCCAA
* *
26273493 CAGCCATTCGAACACCGGCCTAACCAA
1 CAGCAATTCGAACACCGGCCTACCCAA
* *
26273520 CAGCCATTCGAACACCGGCCTAACCAA
1 CAGCAATTCGAACACCGGCCTACCCAA
* * *
26273547 CAGCCATTCGAACACCGGCCTAACCAG
1 CAGCAATTCGAACACCGGCCTACCCAA
* * *
26273574 CAGCAATTCGATCACCGGTCTACCCAG
1 CAGCAATTCGAACACCGGCCTACCCAA
* * ** *
26273601 CAGCAATTTGAACACCAGCCTAGTCAG
1 CAGCAATTCGAACACCGGCCTACCCAA
*
26273628 CAGCAATTTGAACACC
1 CAGCAATTCGAACACC
26273644 AACCTGGCAA
Statistics
Matches: 186, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
27 185 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.38, G:0.16, T:0.16
Consensus pattern (27 bp):
CAGCAATTCGAACACCGGCCTACCCAA
Found at i:26281810 original size:21 final size:21
Alignment explanation
Indices: 26281784--26281825 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26281774 GTTACCGGGG
26281784 AAAGGTAACATTTATCTAACT
1 AAAGGTAACATTTATCTAACT
26281805 AAAGGTAACATTTATCTAACT
1 AAAGGTAACATTTATCTAACT
26281826 TTCGTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAGGTAACATTTATCTAACT
Found at i:26293873 original size:15 final size:15
Alignment explanation
Indices: 26293853--26293885 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26293843 TTTAACGGTA
26293853 GAATAACTAAAATGT
1 GAATAACTAAAATGT
26293868 GAATAACTAAAATGT
1 GAATAACTAAAATGT
26293883 GAA
1 GAA
26293886 ATTAGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (15 bp):
GAATAACTAAAATGT
Found at i:26294477 original size:16 final size:15
Alignment explanation
Indices: 26294456--26294496 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
26294446 TATTTCGATA
26294456 TTTAAACATATATT-TT
1 TTTAAA-AT-TATTGTT
26294472 TTTAAAATTATTGTT
1 TTTAAAATTATTGTT
26294487 TTT-AAATTAT
1 TTTAAAATTAT
26294497 CTCACGCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 11 0.46
15 7 0.29
16 6 0.25
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (15 bp):
TTTAAAATTATTGTT
Found at i:26294632 original size:17 final size:17
Alignment explanation
Indices: 26294600--26294643 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 17
26294590 ACTTTTAAAT
26294600 ATTTTTAATGATTTTTATC
1 ATTTTTAAT--TTTTTATC
26294619 AATTTTTAATTTTTTATC
1 -ATTTTTAATTTTTTATC
26294637 ATTTTTA
1 ATTTTTA
26294644 TATAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.29
18 8 0.33
20 9 0.38
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTTTAATTTTTTATC
Found at i:26294634 original size:18 final size:18
Alignment explanation
Indices: 26294600--26294690 Score: 69
Period size: 18 Copynumber: 4.8 Consensus size: 18
26294590 ACTTTTAAAT
26294600 ATTTTTAATGATTTTTATC
1 ATTTTTAAT-ATTTTTATC
26294619 AATTTTTAAT-TTTTTATC
1 -ATTTTTAATATTTTTATC
* *
26294637 ATTTTTATATAATTTTTTGTA
1 ATTTTTA-AT-A-TTTTTATC
*
26294658 ACTTTTTAATATTTTCAT-
1 A-TTTTTAATATTTTTATC
*
26294676 AATTTTATATATTTT
1 ATTTTTA-ATATTTT
26294691 GTAATATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
17 12 0.20
18 18 0.30
19 5 0.08
20 10 0.17
21 9 0.15
22 6 0.10
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTTTAATATTTTTATC
Found at i:26294665 original size:59 final size:60
Alignment explanation
Indices: 26294601--26294713 Score: 144
Period size: 59 Copynumber: 1.9 Consensus size: 60
26294591 CTTTTAAATA
* * *
26294601 TTTTTAATGATTTTTATCAATTTT-TA-ATTTT-TTATCATTTTTATATA-ATTTTTTGTAAC
1 TTTTTAAT-ATTTTCAT-AATTTTATATATTTTGTAAT-ATTTTAATATATATTTTTTGTAAC
26294660 TTTTTAATATTTTCATAATTTTATATATTTTGTAATATTTTAATATATATTTTT
1 TTTTTAATATTTTCATAATTTTATATATTTTGTAATATTTTAATATATATTTTT
26294714 AAAATTAGAC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
57 6 0.13
58 9 0.19
59 23 0.49
60 9 0.19
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.65
Consensus pattern (60 bp):
TTTTTAATATTTTCATAATTTTATATATTTTGTAATATTTTAATATATATTTTTTGTAAC
Found at i:26294705 original size:18 final size:18
Alignment explanation
Indices: 26294646--26294705 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
26294636 CATTTTTATA
*
26294646 TAATTTTTTGTAACT-TTT
1 TAATATTTTGTAA-TATTT
*
26294664 TAATA-TTT-TCATAATTT
1 TAATATTTTGTAAT-ATTT
26294681 TATATATTTTGTAATATTT
1 TA-ATATTTTGTAATATTT
26294700 TAATAT
1 TAATAT
26294706 ATATTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 8 0.24
18 11 0.32
19 9 0.26
20 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TAATATTTTGTAATATTT
Found at i:26304388 original size:20 final size:20
Alignment explanation
Indices: 26304340--26304390 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
26304330 AGTTATTAGT
*
26304340 AATTATTAAAATTTTATAAA
1 AATTATAAAAATTTTATAAA
*
26304360 AA-AATTAAAAATTTTATAAA
1 AATTA-TAAAAATTTTATAAA
26304380 AATTATAAAAA
1 AATTATAAAAA
26304391 AAATTCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTATAAAAATTTTATAAA
Found at i:26304614 original size:3 final size:3
Alignment explanation
Indices: 26304606--26304631 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26304596 GGCTTGCCTT
26304606 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
26304632 GACAATAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26311274 original size:26 final size:25
Alignment explanation
Indices: 26311241--26311289 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26311231 AATGGATGGT
26311241 ATTAATAAAA-AAATTAAATAAATTA
1 ATTAATAAAATAAA-TAAATAAATTA
*
26311266 ATTACATAAAATAAATATATAAAT
1 ATTA-ATAAAATAAATAAATAAAT
26311290 AAGACCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.19
26 14 0.67
27 3 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
ATTAATAAAATAAATAAATAAATTA
Found at i:26312033 original size:17 final size:17
Alignment explanation
Indices: 26312007--26312040 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26311997 TACCTTCCGC
26312007 CCTCTCCTTCTCTCTTT
1 CCTCTCCTTCTCTCTTT
*
26312024 CCTCTTCTTCTCTCTTT
1 CCTCTCCTTCTCTCTTT
26312041 TTTTCTCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (17 bp):
CCTCTCCTTCTCTCTTT
Found at i:26316911 original size:59 final size:61
Alignment explanation
Indices: 26316847--26316968 Score: 185
Period size: 59 Copynumber: 2.0 Consensus size: 61
26316837 TGGTAAATTT
** * *
26316847 AAAATAATTTAATTTTTTTGGTAGCTTAATTGAATTTTAAAT-TTAATTTTAAACTAT-TA
1 AAAATAATTTAATTTTTTAAGTAGCTTAATTGAATTTAAAATCTAAATTTTAAACTATGTA
*
26316906 AAAATAATTTAATTTTTTAAGTAGCTTACTTGAATTTAAAATCTAAATTTTAAACTATGTA
1 AAAATAATTTAATTTTTTAAGTAGCTTAATTGAATTTAAAATCTAAATTTTAAACTATGTA
26316967 AA
1 AA
26316969 TAAAATAATT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 38 0.68
60 14 0.25
61 4 0.07
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.47
Consensus pattern (61 bp):
AAAATAATTTAATTTTTTAAGTAGCTTAATTGAATTTAAAATCTAAATTTTAAACTATGTA
Found at i:26319181 original size:25 final size:25
Alignment explanation
Indices: 26319127--26319181 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26319117 ACTTTCATCA
26319127 TTTT-TCATTCTTTCAATTTATTAT
1 TTTTCTCATTCTTTCAATTTATTAT
* * *
26319151 TGTTCTCATTCTTTCACTTTATTCT
1 TTTTCTCATTCTTTCAATTTATTAT
26319176 TTTTCT
1 TTTTCT
26319182 TTGAATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 3 0.12
25 23 0.88
ACGTcount: A:0.15, C:0.18, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTTCTCATTCTTTCAATTTATTAT
Found at i:26320492 original size:7 final size:7
Alignment explanation
Indices: 26320480--26320526 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
26320470 AATTAAATTA
26320480 AACGGGG
1 AACGGGG
26320487 AACGGGG
1 AACGGGG
26320494 AACGGGG
1 AACGGGG
26320501 AACGGGG
1 AACGGGG
26320508 AACGGGG
1 AACGGGG
26320515 AACGGGG
1 AACGGGG
26320522 AACGG
1 AACGG
26320527 TTTTGAGGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.55, T:0.00
Consensus pattern (7 bp):
AACGGGG
Found at i:26333833 original size:29 final size:30
Alignment explanation
Indices: 26333766--26333852 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 30
26333756 AATATTAAAA
* *
26333766 TTATACATGAATTATGATTTAGTGTGTAATT
1 TTATACATGAATTTTGATTTA-TGTATAATT
** *
26333797 GCATACATGAATTTTAATTT-TGTATAATT
1 TTATACATGAATTTTGATTTATGTATAATT
26333826 TTATACATGAAATTTTGATTTGATGTA
1 TTATACATG-AATTTTGATTT-ATGTA
26333853 ATTCTTGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
29 15 0.33
30 10 0.22
31 16 0.36
32 4 0.09
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (30 bp):
TTATACATGAATTTTGATTTATGTATAATT
Found at i:26335962 original size:21 final size:20
Alignment explanation
Indices: 26335930--26335968 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26335920 TCTCTATAAA
*
26335930 TTATAATACATTTTCCTTTG
1 TTATAATACATTTACCTTTG
*
26335950 TTATGAATGCATTTACCTT
1 TTAT-AATACATTTACCTT
26335969 CCATAGATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (20 bp):
TTATAATACATTTACCTTTG
Found at i:26339233 original size:17 final size:17
Alignment explanation
Indices: 26339206--26339253 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
26339196 TTAGAAAAAG
*
26339206 TTAAAAAAAAAATTTTT
1 TTAAAAAAAAAATTTCT
*
26339223 TTATTAAAAAAAA-TTCT
1 TTA-AAAAAAAAATTTCT
26339240 TTAAAAAAAAAATT
1 TTAAAAAAAAAATT
26339254 CAAATAGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 8 0.31
17 10 0.38
18 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAAAAAATTTCT
Found at i:26339686 original size:19 final size:18
Alignment explanation
Indices: 26339648--26339693 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
26339638 TTTTAAAGTT
*
26339648 AAATTTTTTATATTTTAA
1 AAATATTTTATATTTTAA
26339666 AAATATTTTATATTTTAA
1 AAATATTTTATATTTTAA
26339684 AAATTATTTT
1 AAA-TATTTT
26339694 TTTTTGTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AAATATTTTATATTTTAA
Found at i:26343046 original size:51 final size:51
Alignment explanation
Indices: 26342972--26343157 Score: 259
Period size: 51 Copynumber: 3.6 Consensus size: 51
26342962 TTTCATTTAA
* * * *
26342972 TACTCACGATGACA-TATTGTCATCGGACCTTTAATTCGTCATGGATTCATT
1 TACTCACGATGACACT-TAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* *
26343023 TACTCACGATGACATTTAATCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
*
26343074 TACTCACGATGACACTTAGTCA-CTGGACCTTTAATCCGTAAAGAATTCATT
1 TACTCACGATGACACTTAGTCATC-GGACCTTTAATCCGTAAAGGATTCATT
*
26343125 TACTCACAATGACACTTAGTCATCGGACTCTTT
1 TACTCACGATGACACTTAGTCATCGGAC-CTTT
26343158 CGTTTATAGC
Statistics
Matches: 122, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
50 1 0.01
51 115 0.94
52 6 0.05
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:26346101 original size:52 final size:52
Alignment explanation
Indices: 26346038--26346273 Score: 314
Period size: 52 Copynumber: 4.5 Consensus size: 52
26346028 CCATTTAATT
* * * * * *
26346038 CTCACAATGACACAAAGTCATCGGACCTTA-AATCCGCAAAAAGA-TCTATATG
1 CTCACGATGACACATAGTCATCGGACCTCATAATCCG-TAAAGGATTC-ATATA
*
26346090 CTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGGATTCATATA
1 CTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATA
* *
26346142 CTCACGATGACACATAGCCATTGGACCTCATAATCCGTAAAGGATTCATATA
1 CTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATA
* *
26346194 CTCACGATGACACATAGTCATCGAACCTCATAATCCGTAAAGGAATCATATA
1 CTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATA
* * *
26346246 CTCATGATGACACATTGTCATCAGACCT
1 CTCACGATGACACATAGTCATCGGACCT
26346274 TTTTCATTTA
Statistics
Matches: 166, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
52 158 0.95
53 8 0.05
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (52 bp):
CTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATA
Found at i:26356696 original size:18 final size:19
Alignment explanation
Indices: 26356670--26356705 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26356660 ACGAAGAACA
26356670 AAAAATAGA-AAATAAAAT
1 AAAAATAGAGAAATAAAAT
*
26356688 AAAAGTAGAGAAATAAAA
1 AAAAATAGAGAAATAAAA
26356706 AATGAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (19 bp):
AAAAATAGAGAAATAAAAT
Found at i:26357931 original size:29 final size:28
Alignment explanation
Indices: 26357832--26358033 Score: 110
Period size: 29 Copynumber: 7.0 Consensus size: 28
26357822 GAAGGTCCCT
* * *
26357832 AAACTTTTCAAAAATCATATTTTTTCCCTT
1 AAAC-TTTCAAAAATCACATTTTTACCC-C
* *
26357862 GAAC-TTCTAAAAATCACATTTTGCT-CCCG
1 AAACTTTC-AAAAATCACATTTT--TACCCC
* * *
26357891 AAA-TTCTAAAAAATTACATTTTCACCCC
1 AAACTT-TCAAAAATCACATTTTTACCCC
**
26357919 TAAACTTTCAAAAATTGCATTTTTTACCCCC
1 -AAACTTTCAAAAATCACA-TTTTTA-CCCC
*
26357950 AAAC-TTCTAAAAATCACATTTTTGCCACC
1 AAACTTTC-AAAAATCACATTTTTACC-CC
26357979 AAA-TTTCCAAAAATCACATTTTTACCCTC
1 AAACTTT-CAAAAATCACATTTTTACCC-C
* * * *
26358008 AATC-TTCCAAAGTGACATTTTTACCC
1 AAACTTTCAAAAATCACATTTTTACCC
26358034 TTAAAATTTT
Statistics
Matches: 137, Mismatches: 19, Indels: 34
0.72 0.10 0.18
Matches are distributed among these distances:
28 26 0.19
29 79 0.58
30 27 0.20
31 5 0.04
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (28 bp):
AAACTTTCAAAAATCACATTTTTACCCC
Found at i:26357983 original size:88 final size:88
Alignment explanation
Indices: 26357828--26358005 Score: 213
Period size: 88 Copynumber: 2.0 Consensus size: 88
26357818 CTCAGAAGGT
* ***
26357828 CCCTAAACTTTTCAAAAATCATATTTTTTCCCTTGAACTTCTAAAAATCACATTTTGCTCCCGAA
1 CCCTAAACTTTTCAAAAATCATATTTTTACCCCCAAACTTCTAAAAATCACATTTTGCTCCCGAA
*
26357893 A-TTCTAAAAAATTACATTTTCAC
66 ATTTC-AAAAAATCACATTTTCAC
26357916 CCCTAAAC-TTTCAAAAATTGCAT-TTTTTACCCCCAAACTTCTAAAAATCACATTTTTGC-CAC
1 CCCTAAACTTTTCAAAAA-T-CATATTTTTACCCCCAAACTTCTAAAAATCACA-TTTTGCTC-C
* *
26357978 C-AAATTTCCAAAAATCACATTTTTAC
62 CGAAATTTCAAAAAATCACATTTTCAC
26358004 CC
1 CC
26358006 TCAATCTTCC
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
87 9 0.12
88 55 0.71
89 14 0.18
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (88 bp):
CCCTAAACTTTTCAAAAATCATATTTTTACCCCCAAACTTCTAAAAATCACATTTTGCTCCCGAA
ATTTCAAAAAATCACATTTTCAC
Found at i:26358217 original size:14 final size:14
Alignment explanation
Indices: 26358189--26358223 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26358179 ATTCATATTT
*
26358189 TATTT-TTTTCTTA
1 TATTTATTTTCGTA
26358202 TATTTATTTTCGTA
1 TATTTATTTTCGTA
26358216 TATTTATT
1 TATTTATT
26358224 CATTCGCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (14 bp):
TATTTATTTTCGTA
Found at i:26364682 original size:11 final size:11
Alignment explanation
Indices: 26364666--26364700 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
26364656 TTAAAAAAAC
26364666 AAATAAATAAA
1 AAATAAATAAA
*
26364677 AAATAAA-ACA
1 AAATAAATAAA
26364687 AAATAAATAAA
1 AAATAAATAAA
26364698 AAA
1 AAA
26364701 GGGTCAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (11 bp):
AAATAAATAAA
Found at i:26364686 original size:20 final size:21
Alignment explanation
Indices: 26364661--26364700 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26364651 AAGTGTTAAA
26364661 AAAAC-AAATAAATAAAAAAT
1 AAAACAAAATAAATAAAAAAT
26364681 AAAACAAAATAAATAAAAAA
1 AAAACAAAATAAATAAAAAA
26364701 GGGTCAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAACAAAATAAATAAAAAAT
Found at i:26365632 original size:21 final size:20
Alignment explanation
Indices: 26365606--26365682 Score: 57
Period size: 26 Copynumber: 3.5 Consensus size: 20
26365596 GGATTTGATG
26365606 AAGAAAAATAAATAAAAAAGA
1 AAGAAAAA-AAATAAAAAAGA
26365627 AAGAAAAGAGGAAAAAATAAAAAAGA
1 AAG---A-A--AAAAAATAAAAAAGA
*
26365653 AAGAAAAAGAATAAAGGAAA-A
1 AAGAAAAAAAATAAA--AAAGA
26365674 AAGAAAAAA
1 AAGAAAAAA
26365683 GAAAATGAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
20 9 0.20
21 12 0.26
22 4 0.09
23 1 0.02
24 1 0.02
25 1 0.02
26 15 0.33
27 3 0.07
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (20 bp):
AAGAAAAAAAATAAAAAAGA
Found at i:26365668 original size:7 final size:7
Alignment explanation
Indices: 26365626--26365687 Score: 52
Period size: 7 Copynumber: 8.1 Consensus size: 7
26365616 AATAAAAAAG
26365626 AAAGAAA
1 AAAGAAA
*
26365633 AGAGGAAA
1 A-AAGAAA
*
26365641 AAATAAA
1 AAAGAAA
26365648 AAAGAAAGAA
1 AAAG--A-AA
26365658 AAAGAATA
1 AAAGAA-A
*
26365666 AAGGAAA
1 AAAGAAA
26365673 AAAGAAA
1 AAAGAAA
26365680 AAAGAAA
1 AAAGAAA
26365687 A
1 A
26365688 TGAGAGGTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
7 24 0.55
8 13 0.30
9 1 0.02
10 6 0.14
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (7 bp):
AAAGAAA
Found at i:26365671 original size:32 final size:30
Alignment explanation
Indices: 26365609--26365686 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 30
26365599 TTTGATGAAG
26365609 AAAAATAAATAAA-AAAGAAAGAAAAGAGGA
1 AAAAATAAA-AAAGAAAGAAAGAAAAGAGGA
26365639 AAAAATAAAAAAGAAAGAAAAAGAATAA-AGGA
1 AAAAATAAAAAAGAAAG--AAAGAA-AAGAGGA
*
26365671 AAAAAGAAAAAAGAAA
1 AAAAATAAAAAAGAAA
26365687 ATGAGAGGTC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
29 3 0.07
30 13 0.30
32 25 0.58
33 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (30 bp):
AAAAATAAAAAAGAAAGAAAGAAAAGAGGA
Found at i:26365673 original size:25 final size:26
Alignment explanation
Indices: 26365619--26365679 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
26365609 AAAAATAAAT
*
26365619 AAAAAAGAAAGAAAAGAGGAAAAAAT
1 AAAAAAGAAAGAAAAGAGGAAAAAAG
*
26365645 AAAAAAGAAAGAAAA-A-GAATAAAGG
1 AAAAAAGAAAGAAAAGAGGAA-AAAAG
26365670 AAAAAAGAAA
1 AAAAAAGAAA
26365680 AAAGAAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 3 0.09
25 14 0.44
26 15 0.47
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (26 bp):
AAAAAAGAAAGAAAAGAGGAAAAAAG
Found at i:26365676 original size:15 final size:14
Alignment explanation
Indices: 26365626--26365687 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 14
26365616 AATAAAAAAG
*
26365626 AAAGAAAAGAGGAAA
1 AAAGAAAA-AAGAAA
*
26365641 AAATAAAAAAGAAAGAA
1 AAAGAAAAAAG--A-AA
*
26365658 AAAGAATAAAGGAAA
1 AAAGAA-AAAAGAAA
26365673 AAAGAAAAAAGAAA
1 AAAGAAAAAAGAAA
26365687 A
1 A
26365688 TGAGAGGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
14 10 0.26
15 15 0.39
16 2 0.05
17 7 0.18
18 4 0.11
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAGAAAAAAGAAA
Found at i:26366682 original size:50 final size:50
Alignment explanation
Indices: 26366595--26366859 Score: 143
Period size: 50 Copynumber: 5.3 Consensus size: 50
26366585 CAGGTTTGAT
** * *
26366595 AGGGAAGGATTGAGGTTGCGATGGCGAATTCGATACCTTAAAAGAGATGA
1 AGGGAAGGATTGAGGCCGCGACGGCGAACTCGATACCTTAAAAGAGATGA
*
26366645 AGGGAAGGATTGAGGCCGCGACGGTGAACTC-AGTACCTTAAAAGATG-TGA
1 AGGGAAGGATTGAGGCCGCGACGGCGAACTCGA-TACCTTAAAAGA-GATGA
* * * * * * * * * * *
26366695 TGGGAAAGG-TTAAGGTCGCAATGGCAAACCCGGTACCAT-GAAGATATGA
1 AGGG-AAGGATTGAGGCCGCGACGGCGAACTCGATACCTTAAAAGAGATGA
* * * ** * *
26366744 AGGGAAAG-TTGAGGCCACAACGATGAACCCGATACC-TAAGAAGATG-TGT
1 AGGGAAGGATTGAGGCCGCGACGGCGAACTCGATACCTTAA-AAGA-GATGA
* * * * *
26366793 TGGGAAGGATTGACGCCGCAACGGCGAA-TCCGAAACCTTAGAAGATG-TGA
1 AGGGAAGGATTGAGGCCGCGACGGCGAACT-CGATACCTTAAAAGA-GATGA
*
26366843 TGGGAAGGATTGAGGCC
1 AGGGAAGGATTGAGGCC
26366860 ATAACGGCGA
Statistics
Matches: 163, Mismatches: 41, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
47 1 0.01
48 23 0.14
49 23 0.14
50 109 0.67
51 7 0.04
ACGTcount: A:0.33, C:0.16, G:0.33, T:0.18
Consensus pattern (50 bp):
AGGGAAGGATTGAGGCCGCGACGGCGAACTCGATACCTTAAAAGAGATGA
Found at i:26366811 original size:148 final size:149
Alignment explanation
Indices: 26366625--26366951 Score: 342
Period size: 148 Copynumber: 2.2 Consensus size: 149
26366615 ATGGCGAATT
* * * * *
26366625 CGATACCTTAA-AAGA-GATGAAGGGAAGGATTGAGGCCGCGACGGTGAACTCAG-TACCTTAAA
1 CGATACC-TAAGAAGATG-TGATGGGAAGGATTGACGCCGCAACGGCGAA-TCAGAAACCTTAAA
* * * * *
26366687 AGATGTGATGGGAAAGG-TTAAGGTCGCAATGGCAAACCCGGTACCATGAAGATATGAAGGGAAA
63 AGATGTGATGGG-AAGGATTAAGGCCACAACGGCAAACCCGGTACCATGAAAATACGAAGGGAAA
*
26366751 -GTTGA-GGCCACAACGATGAACC
127 GGTT-ATGGCCACAACGACGAACC
* * *
26366773 CGATACCTAAGAAGATGTGTTGGGAAGGATTGACGCCGCAACGGCGAATCCGAAACCTTAGAAGA
1 CGATACCTAAGAAGATGTGATGGGAAGGATTGACGCCGCAACGGCGAATCAGAAACCTTAAAAGA
* * * * * *
26366838 TGTGATGGGAAGGATTGAGGCCATAACGGCGAATCTGGTACCATGAAAATGCGAAGGGAAAGGTT
66 TGTGATGGGAAGGATTAAGGCCACAACGGCAAACCCGGTACCATGAAAATACGAAGGGAAAGGTT
* *
26366903 ATGGCCGCAACGGCGAACC
131 ATGGCCACAACGACGAACC
* *
26366922 CGCTACCTTAGAAGATGTGATGGGATAGGA
1 CGATACCTAAGAAGATGTGATGGGA-AGGA
26366952 AAGGTTGAGG
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
147 10 0.07
148 93 0.63
149 40 0.27
150 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (149 bp):
CGATACCTAAGAAGATGTGATGGGAAGGATTGACGCCGCAACGGCGAATCAGAAACCTTAAAAGA
TGTGATGGGAAGGATTAAGGCCACAACGGCAAACCCGGTACCATGAAAATACGAAGGGAAAGGTT
ATGGCCACAACGACGAACC
Found at i:26366866 original size:50 final size:50
Alignment explanation
Indices: 26366625--26366951 Score: 229
Period size: 50 Copynumber: 6.6 Consensus size: 50
26366615 ATGGCGAATT
* * * * * *
26366625 CGATACCTTAAAAGA-GATGAAGGGAAGGATTGAGGCCGCGACGGTGAACT
1 CGATACCTTAGAAGATG-TGATGGGAAGGATTGAGGCCACAACGGCGAACC
* * * * * *
26366675 C-AGTACCTTAAAAGATGTGATGGGAAAGG-TTAAGGTCGCAATGGCAAACC
1 CGA-TACCTTAGAAGATGTGATGGG-AAGGATTGAGGCCACAACGGCGAACC
* * * * * **
26366725 CGGTACCAT-GAAGATATGAAGGGAAAG-TTGAGGCCACAACGATGAACC
1 CGATACCTTAGAAGATGTGATGGGAAGGATTGAGGCCACAACGGCGAACC
* * * * *
26366773 CGATACCTAAGAAGATGTGTTGGGAAGGATTGACGCCGCAACGGCGAATC
1 CGATACCTTAGAAGATGTGATGGGAAGGATTGAGGCCACAACGGCGAACC
* * *
26366823 CGAAACCTTAGAAGATGTGATGGGAAGGATTGAGGCCATAACGGCGAATC
1 CGATACCTTAGAAGATGTGATGGGAAGGATTGAGGCCACAACGGCGAACC
* * * * * * *
26366873 TGGTACCAT-GAAAATGCGAAGGGAAAGG-TT-ATGGCCGCAACGGCGAACC
1 CGATACCTTAGAAGATGTGATGGG-AAGGATTGA-GGCCACAACGGCGAACC
*
26366922 CGCTACCTTAGAAGATGTGATGGGATAGGA
1 CGATACCTTAGAAGATGTGATGGGA-AGGA
26366952 AAGGTTGAGG
Statistics
Matches: 211, Mismatches: 55, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
48 24 0.11
49 60 0.28
50 122 0.58
51 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (50 bp):
CGATACCTTAGAAGATGTGATGGGAAGGATTGAGGCCACAACGGCGAACC
Found at i:26367418 original size:39 final size:39
Alignment explanation
Indices: 26367375--26368029 Score: 204
Period size: 39 Copynumber: 16.8 Consensus size: 39
26367365 AACCAATTTC
* * *
26367375 TTACCCCGAGCCTGAGGTAAATTGCAACCATTCGATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
** * * * *
26367414 TTACCCCGA-CCCCAGGGCGGA-T-CATCATCAGCCAATCTT
1 TTACCCCGAGCCTGA-GGCAGATTGCA--ACCATCCGATCTT
* *
26367453 TTACCTCGAGCCTTG-GGCAGATTGCAGCCATCCGATCTT
1 TTACCCCGAGCC-TGAGGCAGATTGCAACCATCCGATCTT
* * * *
26367492 TTACCCTGAGCTTGAGGCAGATTGCAGCCATTCGATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * ** * * * *
26367531 TTACCCCGAGCTTG-GGATAGATCACTATCAGT-CAATCTC
1 TTACCCCGAGCCTGAGG-CAGATTGCAACCA-TCCGATCTT
* * * ** *
26367570 TTACCCCGAACC-AAGACAGATTGCAGTCATCCAATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* ** * * * * *
26367608 TTACCCCGAGCCT-AGGGCAAATCACTATCAGCCAATCTC
1 TTACCCCGAGCCTGA-GGCAGATTGCAACCATCCGATCTT
* * *
26367647 TTACCCCGA-ACTTAGGGCAGATTGTAACCATCCGATCTT
1 TTACCCCGAGCCTGA-GGCAGATTGCAACCATCCGATCTT
* * * ** * * * * *
26367686 TTACCCTGAGCCTGGGGCAAATCACCATCAGCCAATCTC
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * * * *
26367725 TTACCCCGAGCTTGGGGCAGATTACAGCCATCCGATCTC
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * * * * *
26367764 TTACCTCGAGCCTAAGGCAGA-T-CACCGTCAGCCAATCTC
1 TTACCCCGAGCCTGAGGCAGATTGCAAC--CATCCGATCTT
* * * **
26367803 TTACCCCGAGCTTGGGGTAGATTGCAACCATTTGATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * * * *
26367842 TTACCCCGAGCCTGGGGCGGA-T-CATCATCAGCCAATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCA--ACCATCCGATCTT
* * ** * * * * *
26367881 TTATCCCGAGCCTGGGGCAGATCACTATCAGCCAATCTC
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * * * * * *
26367920 TTACCTCGAACCTGGGGCATATTGTAGCCATTCGATCTT
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
* * * ** * * * ** *
26367959 TTACCTCGAGCTTGGGGCAGATCACTATCAGCTAATCTC
1 TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
*
26367998 TTACCCCGAGCC-AAGGGCAGATTGCAACCATC
1 TTACCCCGAGCCTGA-GGCAGATTGCAACCATC
26368030 TGATATCTTA
Statistics
Matches: 442, Mismatches: 149, Indels: 50
0.69 0.23 0.08
Matches are distributed among these distances:
37 8 0.02
38 38 0.09
39 383 0.87
40 7 0.02
41 6 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (39 bp):
TTACCCCGAGCCTGAGGCAGATTGCAACCATCCGATCTT
Found at i:26367530 original size:78 final size:76
Alignment explanation
Indices: 26367448--26367902 Score: 321
Period size: 78 Copynumber: 5.8 Consensus size: 76
26367438 TCATCAGCCA
* * * * *
26367448 ATCTTTTACCTCGAGCCTTGGGCAGATTGCAGCCATCCGATCTTTTACCCTGAGCTTGAGGCAGA
1 ATCTTTTACCCCGAGCCTAGGGCAGATT-CA-CCATCCAATCTCTTACCCCGAGCTTGAGGCAGA
*
26367513 TTGCAGCCATTCG
64 TTGCAGCCATCCG
* * * * ** *
26367526 ATCTTTTACCCCGAG-CTTGGGATAGA-TCACTATCAGTCAATCTCTTACCCCGAAC-CAAGACA
1 ATCTTTTACCCCGAGCCTAGGG-CAGATTCACCATC---CAATCTCTTACCCCGAGCTTGAGGCA
* *
26367588 GATTGCAGTCATCCA
62 GATTGCAGCCATCCG
* * *
26367603 ATCTTTTACCCCGAGCCTAGGGCA-AATCACTATCAGCCAATCTCTTACCCCGAACTT-AGGGCA
1 ATCTTTTACCCCGAGCCTAGGGCAGATTCAC---CATCCAATCTCTTACCCCGAGCTTGA-GGCA
* *
26367666 GATTGTAACCATCCG
62 GATTGCAGCCATCCG
* * * *
26367681 ATCTTTTACCCTGAGCCTGGGGCA-AATCACCATCAGCCAATCTCTTACCCCGAGCTTGGGGCAG
1 ATCTTTTACCCCGAGCCTAGGGCAGATTCACCAT---CCAATCTCTTACCCCGAGCTTGAGGCAG
*
26367745 ATTACAGCCATCCG
63 ATTGCAGCCATCCG
* * * * * *
26367759 ATCTCTTACCTCGAGCCTAAGGCAGA-TCACCGTCAGCCAATCTCTTACCCCGAGCTTGGGGTAG
1 ATCTTTTACCCCGAGCCTAGGGCAGATTCA-C--CATCCAATCTCTTACCCCGAGCTTGAGGCAG
* **
26367823 ATTGCAACCATTTG
63 ATTGCAGCCATCCG
* * * * * * * *
26367837 ATCTTTTACCCCGAGCCTGGGGCGGATCATCATCAGCCAATCTTTTATCCCGAGCCTGGGGCAGA
1 ATCTTTTACCCCGAGCCTAGGGCAGAT--TCACCATCCAATCTCTTACCCCGAGCTTGAGGCAGA
26367902 T
64 T
26367903 CACTATCAGC
Statistics
Matches: 303, Mismatches: 52, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
75 6 0.02
76 3 0.01
77 62 0.20
78 223 0.74
79 2 0.01
80 2 0.01
81 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (76 bp):
ATCTTTTACCCCGAGCCTAGGGCAGATTCACCATCCAATCTCTTACCCCGAGCTTGAGGCAGATT
GCAGCCATCCG
Found at i:26367765 original size:194 final size:195
Alignment explanation
Indices: 26367409--26367813 Score: 441
Period size: 194 Copynumber: 2.1 Consensus size: 195
26367399 CAACCATTCG
* ** * * *
26367409 ATCTTTTACCCCGACCCCAGGGCGGATCATCATCAGCCAATCTTTTACCTCGAGCCTTGGGCAGA
1 ATCTTTTACCCCGAGCCCAGGGCAAATCATCATCAGCCAATCTCTTACCCCGAGACTTGGGCAGA
* * * *
26367474 TTGCAGCCATCCGATCTTTTACCCTGAGCTTGAGGCAGATTGCAGCCATTCGATCTTTTACCCCG
66 TTGCAACCATCCGATCTTTTACCCTGAGCCTGAGGCAGAATGCAGCCATTCGATCTCTTACCCCG
* * ** *
26367539 AGCTTGGGATAGATCACTATCAGTCAATCTCTTACCCCGAACC-AAGACAGATTGCAGTCATCCA
131 AGCTTGGGACAGATCACTACCAGTCAATCTCTTACCCCGAACCTAAGACAGATCACAGTCAGCCA
*
26367603 ATCTTTTACCCCGAGCCTAGGGCAAATCA-CTATCAGCCAATCTCTTACCCCGA-ACTTAGGGCA
1 ATCTTTTACCCCGAGCCCAGGGCAAATCATC-ATCAGCCAATCTCTTACCCCGAGACTT-GGGCA
* *
26367666 GATTGTAACCATCCGATCTTTTACCCTGAGCCTGGGGCA-AAT-CA-CCA-TCAGCCAATCTCTT
64 GATTGCAACCATCCGATCTTTTACCCTGAGCCTGAGGCAGAATGCAGCCATTC-G---ATCTCTT
* * * * * * *
26367727 ACCCCGAGCTTGGGGCAGATTAC-AGCCA-TCCGATCTCTTACCTCGAGCCTAAGGCAGATCACC
125 ACCCCGAGCTTGGGACAGATCACTA-CCAGT-CAATCTCTTACCCCGAACCTAAGACAGATCACA
26367790 GTCAGCCA
188 GTCAGCCA
*
26367798 ATCTCTTACCCCGAGC
1 ATCTTTTACCCCGAGC
26367814 TTGGGGTAGA
Statistics
Matches: 176, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
190 2 0.01
191 4 0.02
192 2 0.01
193 8 0.05
194 129 0.73
195 31 0.18
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.25
Consensus pattern (195 bp):
ATCTTTTACCCCGAGCCCAGGGCAAATCATCATCAGCCAATCTCTTACCCCGAGACTTGGGCAGA
TTGCAACCATCCGATCTTTTACCCTGAGCCTGAGGCAGAATGCAGCCATTCGATCTCTTACCCCG
AGCTTGGGACAGATCACTACCAGTCAATCTCTTACCCCGAACCTAAGACAGATCACAGTCAGCCA
Found at i:26367809 original size:156 final size:155
Alignment explanation
Indices: 26367507--26367928 Score: 504
Period size: 156 Copynumber: 2.7 Consensus size: 155
26367497 CTGAGCTTGA
* * ** * *
26367507 GGCAGATTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGATAGATCACTATCAGTCAATCTCTT
1 GGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTT
* *** * * * * * *
26367572 ACCCCGAACCAAGACAGATTGCAGTCATCCAATCTTTTACCCCGAGCCTAGGGCAAATCACTATC
66 ACCCCGAGCTGGGGCAGATTACAGTCATCCAATCTCTTACCTCGAGCCTAAGGCAAATCACCATC
26367637 AGCCAATCTCTTACCCCGAACTTAG
131 AGCCAATCTCTTACCCCGAACTTAG
* * * *
26367662 GGCAGATTGTAACCATCCGATCTTTTACCCTGAGCCTGGGGCAAATCACCATCAGCCAATCTCTT
1 GGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTT
* * * *
26367727 ACCCCGAGCTTGGGGCAGATTACAGCCATCCGATCTCTTACCTCGAGCCTAAGGCAGATCACCGT
66 ACCCCGAGC-TGGGGCAGATTACAGTCATCCAATCTCTTACCTCGAGCCTAAGGCAAATCACCAT
* *
26367792 CAGCCAATCTCTTACCCCGAGCTTGG
130 CAGCCAATCTCTTACCCCGAACTTAG
* * * * *
26367818 GGTAGATTGCAACCATTTGATCTTTTACCCCGAGCCTGGGGCGGATCATCATCAGCCAATCTTTT
1 GGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTT
* * *
26367883 ATCCCGAGCCTGGGGCAGATCACTA-TCAGCCAATCTCTTACCTCGA
66 ACCCCGAG-CTGGGGCAGATTAC-AGTCATCCAATCTCTTACCTCGA
26367929 ACCTGGGGCA
Statistics
Matches: 224, Mismatches: 40, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
155 63 0.28
156 159 0.71
157 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (155 bp):
GGCAGATTGCAACCATTCGATCTTTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTT
ACCCCGAGCTGGGGCAGATTACAGTCATCCAATCTCTTACCTCGAGCCTAAGGCAAATCACCATC
AGCCAATCTCTTACCCCGAACTTAG
Found at i:26367924 original size:78 final size:78
Alignment explanation
Indices: 26367597--26368009 Score: 352
Period size: 78 Copynumber: 5.3 Consensus size: 78
26367587 AGATTGCAGT
* * * * *
26367597 CATCCAATCTTTTACCCCGAGCCTAGGGCAAATCACTATCAGCCAATCTCTTACCCCGAACTTAG
1 CATCCAATCTCTTACCCCGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
**
26367662 GGCAGAT-TGTAAC
66 GGCAGATCACT-AC
* * *
26367675 CATCCGATCTTTTACCCTGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
1 CATCCAATCTCTTACCCCGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
*
26367740 GGCAGATTAC-AGC
66 GGCAGATCACTA-C
* * ** * *
26367753 CATCCGATCTCTTACCTCGAGCCTAAGGCAGATCACCGTCAGCCAATCTCTTACCCCGAGCTTGG
1 CATCCAATCTCTTACCCCGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
* ** *
26367818 GGTAGATTGCAAC
66 GGCAGATCACTAC
*** * ** * * * *
26367831 CATTTGATCTTTTACCCCGAGCCTGGGGCGGATCATCATCAGCCAATCTTTTATCCCGAGCCTGG
1 CATCCAATCTCTTACCCCGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
*
26367896 GGCAGATCACTAT
66 GGCAGATCACTAC
* * * * * * *
26367909 CAGCCAATCTCTTACCTCGAACCTGGGGCATATTGTAGCCATTC-G---ATCTTTTACCTCGAGC
1 CATCCAATCTCTTACCCCGAGCCTGGGGCA-AAT-CA-CCA-TCAGCCAATCTCTTACCCCGAGC
*
26367970 TTGGGGCAGATCACTAT
62 TTGGGGCAGATCACTAC
* *
26367987 CAGCTAATCTCTTACCCCGAGCC
1 CATCCAATCTCTTACCCCGAGCC
26368010 AAGGGCAGAT
Statistics
Matches: 276, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
77 1 0.00
78 267 0.97
79 2 0.01
80 1 0.00
81 3 0.01
82 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (78 bp):
CATCCAATCTCTTACCCCGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCCCGAGCTTGG
GGCAGATCACTAC
Found at i:26367982 original size:117 final size:116
Alignment explanation
Indices: 26367409--26368019 Score: 473
Period size: 117 Copynumber: 5.2 Consensus size: 116
26367399 CAACCATTCG
* * * * * * *
26367409 ATCTTTTACCCCGACCCCAGGGCGGATCA-TCATCAGCCAATCTTTTACCTCGAGCCTTGGGCAG
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACT-ATCAGCCAATCTCTTACCCCGAGCCTGGGGCAG
* * * ** * ** *
26367473 ATTGCAGCCATCCGATCTTTTACCCTGAGCTTGAGGCAGATTGCAGCCATTCG
65 ATTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * * * ** *
26367526 ATCTTTTACCCCGAG-CTTGGGATAGATCACTATCAGTCAATCTCTTACCCCGAACC-AAGACAG
1 ATCTCTTACCCCGAGCCTAGGG-CAGATCACTATCAGCCAATCTCTTACCCCGAGCCTGGGGCAG
* * * * * *
26367589 ATTGCAGTCATCCAATCTTTTACCCCGAGCCTAGGGCAAATCACTATCAGCCA
65 ATTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAGATCAC-ATCAGCCA
* * ** * * * * *
26367642 ATCTCTTACCCCGAACTTAGGGCAGAT-TGTAACCATCCGATCTTTTACCCTGAGCCTGGGGCA-
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACT-ATCAGCCAATCTCTTACCCCGAGCCTGGGGCAG
* * * * * *
26367705 AAT-CA-CCA-TCAGCCAATCTCTTACCCCGAGCTTGGGGCAGATTACAGCCATCCG
65 ATTGCAGCCATTC-G---ATCTTTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * ** * *
26367759 ATCTCTTACCTCGAGCCTAAGGCAGATCACCGTCAGCCAATCTCTTACCCCGAGCTTGGGGTAGA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACTATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGA
* * * *
26367824 TTGCAACCATTTGATCTTTTACCCCGAGCCTGGGGCGGATCATCATCAGCCA
66 TTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * * * *
26367876 ATCTTTTATCCCGAGCCTGGGGCAGATCACTATCAGCCAATCTCTTACCTCGAACCTGGGGCATA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACTATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGA
* * *
26367941 TTGTAGCCATTCGATCTTTTACCTCGAGCTTGGGGCAGATCACTATCAGCTA
66 TTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAGATCAC-ATCAGCCA
*
26367993 ATCTCTTACCCCGAGCCAAGGGCAGAT
1 ATCTCTTACCCCGAGCCTAGGGCAGAT
26368020 TGCAACCATC
Statistics
Matches: 375, Mismatches: 101, Indels: 36
0.73 0.20 0.07
Matches are distributed among these distances:
113 1 0.00
114 2 0.01
115 3 0.01
116 85 0.23
117 272 0.73
118 5 0.01
119 2 0.01
120 4 0.01
121 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (116 bp):
ATCTCTTACCCCGAGCCTAGGGCAGATCACTATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGA
TTGCAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAGATCACATCAGCCA
Found at i:26370224 original size:29 final size:29
Alignment explanation
Indices: 26370169--26370344 Score: 160
Period size: 29 Copynumber: 6.1 Consensus size: 29
26370159 CCCAGAAGGT
* * *
26370169 CCCT-GAACTTTCTAAAAATCATA-TTTTG
1 CCCTCGAAC-TTCCAAAAATCACATTTTTA
* * *
26370197 CCCCCTAACTTCCAAAAATCATATTTTTTA
1 CCCTCGAACTTCCAAAAATCACA-TTTTTA
* * * *
26370227 CCCTCGAGCTTTCGAAAATTACATTTTTA
1 CCCTCGAACTTCCAAAAATCACATTTTTA
* *
26370256 CCCTCAAACTTCCAAAAATCACATTTTTG
1 CCCTCGAACTTCCAAAAATCACATTTTTA
* *
26370285 CTCTCGAATTTCCAAAAATCACATTTTTA
1 CCCTCGAACTTCCAAAAATCACATTTTTA
* * *
26370314 CCCCCGATCTTCC-AAAATGACATTTTTA
1 CCCTCGAACTTCCAAAAATCACATTTTTA
26370342 CCC
1 CCC
26370345 CTAAAACTTT
Statistics
Matches: 119, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
28 33 0.28
29 66 0.55
30 20 0.17
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.35
Consensus pattern (29 bp):
CCCTCGAACTTCCAAAAATCACATTTTTA
Found at i:26370393 original size:28 final size:28
Alignment explanation
Indices: 26370324--26370397 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 28
26370314 CCCCCGATCT
* *
26370324 TCCAAAATGACATTTTTACCCCTAAAACTT
1 TCCAAAATG-CA-TTTTAACCCTAAAACTC
*
26370354 TCCAATATTGCATTTTAACCCT-AAACTC
1 TCCAA-AATGCATTTTAACCCTAAAACTC
26370382 TCCAAAACTGCATTTT
1 TCCAAAA-TGCATTTT
26370398 CGATCCCCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 1 0.03
28 18 0.47
29 9 0.24
30 7 0.18
31 3 0.08
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (28 bp):
TCCAAAATGCATTTTAACCCTAAAACTC
Found at i:26370539 original size:14 final size:14
Alignment explanation
Indices: 26370511--26370545 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26370501 ATTCGTATTT
*
26370511 TATTT-TTTTCTTA
1 TATTTATTTTCATA
26370524 TATTTATTTTCATA
1 TATTTATTTTCATA
26370538 TATTTATT
1 TATTTATT
26370546 CATTCGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTTATTTTCATA
Found at i:26371973 original size:35 final size:35
Alignment explanation
Indices: 26371932--26372031 Score: 107
Period size: 35 Copynumber: 2.8 Consensus size: 35
26371922 TAATAGTTTA
26371932 TATTTTTATAAATTTTAAATAATTAAATTTTA-TTT
1 TATTTTTA-AAATTTTAAATAATTAAATTTTATTTT
**
26371967 TATTTTTAAAAAAGATT-AA-AATTAAATTTTATTTT
1 TATTTTT--AAAATTTTAAATAATTAAATTTTATTTT
26372002 TATTAATTTAAAATTTTAAATAACTTAAAT
1 TATT--TTTAAAATTTTAAATAA-TTAAAT
26372032 AAAAAATTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
34 12 0.23
35 22 0.42
36 7 0.13
37 6 0.11
38 6 0.11
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (35 bp):
TATTTTTAAAATTTTAAATAATTAAATTTTATTTT
Found at i:26390139 original size:21 final size:22
Alignment explanation
Indices: 26390103--26390147 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
26390093 CAACATATGA
*
26390103 TTTTAAAATTATTAAAATTATT
1 TTTTAAAAATATTAAAATTATT
26390125 TTTTAAAAATA-TAAAATTATT
1 TTTTAAAAATATTAAAATTATT
26390146 TT
1 TT
26390148 AAAATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTAAAAATATTAAAATTATT
Found at i:26390149 original size:19 final size:19
Alignment explanation
Indices: 26390102--26390157 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
26390092 TCAACATATG
26390102 ATTTTAAAATTATTAAAATT
1 ATTTTAAAATTA-TAAAATT
*
26390122 ATTTTTTAAAAATATAAAATT
1 A--TTTTAAAATTATAAAATT
26390143 ATTTTAAAATTATAA
1 ATTTTAAAATTATAA
26390158 TCATCATCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 13 0.41
20 1 0.03
21 8 0.25
22 10 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTTAAAATTATAAAATT
Found at i:26390847 original size:23 final size:23
Alignment explanation
Indices: 26390797--26390846 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
26390787 CCCAAAACTC
* * *
26390797 AAAATCCCCAAATTCAATAACCT
1 AAAATCACCAAATTCAACAACAT
26390820 AAAATCACCAAATTCAACAATCAT
1 AAAATCACCAAATTCAACAA-CAT
26390844 AAA
1 AAA
26390847 TAATTCGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAATCACCAAATTCAACAACAT
Found at i:26391304 original size:17 final size:17
Alignment explanation
Indices: 26391282--26391327 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
26391272 ATAAAGGATG
26391282 TTTTAATTTTTTTTTAA
1 TTTTAATTTTTTTTTAA
* *
26391299 TTTTAATTATGTTTTAA
1 TTTTAATTTTTTTTTAA
*
26391316 CTTTAATTTTTT
1 TTTTAATTTTTT
26391328 ACTTATGTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTAATTTTTTTTTAA
Found at i:26407517 original size:13 final size:13
Alignment explanation
Indices: 26407499--26407561 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
26407489 AATTTAATAT
*
26407499 TGTTTTTGGAAAG
1 TGTTTTTGAAAAG
*
26407512 TGTTTTTAAAAAG
1 TGTTTTTGAAAAG
* *
26407525 TATTTTAGAAAAG
1 TGTTTTTGAAAAG
*
26407538 TGATTTTGAAAAG
1 TGTTTTTGAAAAG
*
26407551 TATTTTT-AAAA
1 TGTTTTTGAAAA
26407562 AATTTGATTT
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
12 4 0.10
13 36 0.90
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.44
Consensus pattern (13 bp):
TGTTTTTGAAAAG
Found at i:26407981 original size:17 final size:17
Alignment explanation
Indices: 26407948--26407981 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26407938 TGTTTAACAT
*
26407948 TACTTTTTGTTCAAAAA
1 TACTTTTTATTCAAAAA
26407965 TACTTTTTATATCAAAA
1 TACTTTTTAT-TCAAAA
26407982 GTGTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (17 bp):
TACTTTTTATTCAAAAA
Found at i:26409635 original size:189 final size:189
Alignment explanation
Indices: 26409315--26409690 Score: 752
Period size: 189 Copynumber: 2.0 Consensus size: 189
26409305 ATTTAAATAG
26409315 GTTTCATGCATACAAACATGTACCCTATCTTAAATTAGACATGTTTTTATATGATTCTGAACCCA
1 GTTTCATGCATACAAACATGTACCCTATCTTAAATTAGACATGTTTTTATATGATTCTGAACCCA
26409380 TGCAACTTCACCATTATGCGAACTCCTCCTGCGAACAAGACTCTTGGATTAAGCCTTGCTTAAAC
66 TGCAACTTCACCATTATGCGAACTCCTCCTGCGAACAAGACTCTTGGATTAAGCCTTGCTTAAAC
26409445 CCATAATTAAGATGAATTTGGGCCAGAATAATGCTAAGAGTTTATATATTTCCTTAAGA
131 CCATAATTAAGATGAATTTGGGCCAGAATAATGCTAAGAGTTTATATATTTCCTTAAGA
26409504 GTTTCATGCATACAAACATGTACCCTATCTTAAATTAGACATGTTTTTATATGATTCTGAACCCA
1 GTTTCATGCATACAAACATGTACCCTATCTTAAATTAGACATGTTTTTATATGATTCTGAACCCA
26409569 TGCAACTTCACCATTATGCGAACTCCTCCTGCGAACAAGACTCTTGGATTAAGCCTTGCTTAAAC
66 TGCAACTTCACCATTATGCGAACTCCTCCTGCGAACAAGACTCTTGGATTAAGCCTTGCTTAAAC
26409634 CCATAATTAAGATGAATTTGGGCCAGAATAATGCTAAGAGTTTATATATTTCCTTAA
131 CCATAATTAAGATGAATTTGGGCCAGAATAATGCTAAGAGTTTATATATTTCCTTAA
26409691 AAATCACTAA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (189 bp):
GTTTCATGCATACAAACATGTACCCTATCTTAAATTAGACATGTTTTTATATGATTCTGAACCCA
TGCAACTTCACCATTATGCGAACTCCTCCTGCGAACAAGACTCTTGGATTAAGCCTTGCTTAAAC
CCATAATTAAGATGAATTTGGGCCAGAATAATGCTAAGAGTTTATATATTTCCTTAAGA
Found at i:26409860 original size:17 final size:16
Alignment explanation
Indices: 26409835--26409869 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26409825 AATAATATTG
26409835 AAATGTTAAAAAATTAA
1 AAATGTTAAAAAA-TAA
*
26409852 AAATTTTAAAAAATAA
1 AAATGTTAAAAAATAA
26409868 AA
1 AA
26409870 CAATATTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATGTTAAAAAATAA
Found at i:26413527 original size:13 final size:13
Alignment explanation
Indices: 26413509--26413565 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
26413499 TGATCGACAC
*
26413509 GTTGACTTTGATT
1 GTTGACTTTGACT
26413522 GTTGACTTTGACCT
1 GTTGACTTTGA-CT
*
26413536 -TTGATCATTGACT
1 GTTGA-CTTTGACT
*
26413549 -TTGACTTTGATT
1 GTTGACTTTGACT
26413561 GTTGA
1 GTTGA
26413566 TTTTTTTGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 6 0.16
13 25 0.68
14 6 0.16
ACGTcount: A:0.18, C:0.12, G:0.21, T:0.49
Consensus pattern (13 bp):
GTTGACTTTGACT
Found at i:26413532 original size:6 final size:6
Alignment explanation
Indices: 26413510--26413558 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
26413500 GATCGACACG
* *
26413510 TTGACT TTGATT GTTGACT TTGACCT TTGATCA TTGACT TTGACT TTGA
1 TTGACT TTGACT -TTGACT TTGA-CT TTGA-CT TTGACT TTGACT TTGA
26413559 TTGTTGATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 20 0.56
7 16 0.44
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.49
Consensus pattern (6 bp):
TTGACT
Found at i:26413539 original size:20 final size:19
Alignment explanation
Indices: 26413510--26413565 Score: 85
Period size: 20 Copynumber: 2.9 Consensus size: 19
26413500 GATCGACACG
26413510 TTGACTTTGATTGTTGACT
1 TTGACTTTGATTGTTGACT
**
26413529 TTGACCTTTGATCATTGACT
1 TTGA-CTTTGATTGTTGACT
26413549 TTGACTTTGATTGTTGA
1 TTGACTTTGATTGTTGA
26413566 TTTTTTTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.18, C:0.12, G:0.20, T:0.50
Consensus pattern (19 bp):
TTGACTTTGATTGTTGACT
Found at i:26421758 original size:3 final size:3
Alignment explanation
Indices: 26421750--26421820 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
26421740 TTTAGGGTTT
26421750 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
26421798 AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AA
26421821 ATAACACATG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26421914 original size:56 final size:56
Alignment explanation
Indices: 26421853--26421992 Score: 198
Period size: 52 Copynumber: 2.6 Consensus size: 56
26421843 TTTTCAAACA
*
26421853 ATTCAATCTGTCCACAACAGAAAATAAAAAATCTGAAAAAGAAGATGGAAGGCCAC
1 ATTCAATCTGTCCACAACAGAAAATAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
*
26421909 ATTCAATCTGTCCACAACAG--GA-AAAAAA-CTGAAAAAGAAGATGCAAGGCCAC
1 ATTCAATCTGTCCACAACAGAAAATAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
* * * *
26421961 ATTCCATCTGTCCATAATAGAAAATAGAAAAT
1 ATTCAATCTGTCCACAACAGAAAATAAAAAAT
26421993 TTGCATATGC
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
52 40 0.55
53 6 0.08
54 2 0.03
55 5 0.07
56 20 0.27
ACGTcount: A:0.49, C:0.19, G:0.15, T:0.18
Consensus pattern (56 bp):
ATTCAATCTGTCCACAACAGAAAATAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
Found at i:26422574 original size:15 final size:15
Alignment explanation
Indices: 26422554--26422590 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
26422544 ACGTGGTGGT
26422554 GGAGGAGGAGAAGGA
1 GGAGGAGGAGAAGGA
26422569 GGAGGAGGAGAAGGA
1 GGAGGAGGAGAAGGA
*
26422584 GAAGGAG
1 GGAGGAG
26422591 AAGGAGAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (15 bp):
GGAGGAGGAGAAGGA
Found at i:26422597 original size:6 final size:6
Alignment explanation
Indices: 26422554--26422600 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
26422544 ACGTGGTGGT
*
26422554 GGAGGA GGAGAA GGAGGAGGA GGAGAA GGAGAA GGAGAA GGAGAA GG
1 GGAGAA GGAGAA GGA-GA--A GGAGAA GGAGAA GGAGAA GGAGAA GG
26422601 CGGTTGTTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
6 29 0.78
7 2 0.05
8 2 0.05
9 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (6 bp):
GGAGAA
Found at i:26422728 original size:21 final size:21
Alignment explanation
Indices: 26422702--26422742 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26422692 CAACGTGGCA
26422702 AGTTAACTGGCCACATAAGCT
1 AGTTAACTGGCCACATAAGCT
*
26422723 AGTTAACTTGCCACATAAGC
1 AGTTAACTGGCCACATAAGC
26422743 AATCCCGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATAAGCT
Found at i:26423185 original size:34 final size:34
Alignment explanation
Indices: 26423140--26423221 Score: 128
Period size: 34 Copynumber: 2.4 Consensus size: 34
26423130 TTAAGAGAAA
* *
26423140 AAAAAAGTATATTAATGTGTTAACTATTTGGATT
1 AAAAAATTATATTAACGTGTTAACTATTTGGATT
* *
26423174 AAATAATTATATTAACGTGTTAATTATTTGGATT
1 AAAAAATTATATTAACGTGTTAACTATTTGGATT
26423208 AAAAAATTATATTA
1 AAAAAATTATATTA
26423222 TAAAATAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (34 bp):
AAAAAATTATATTAACGTGTTAACTATTTGGATT
Found at i:26425055 original size:26 final size:26
Alignment explanation
Indices: 26424991--26425055 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
26424981 AACCCAAACT
* * *
26424991 TTTAAATTATATTAATATTTATTTATA
1 TTTAAA-TAAATTAATATTTAATTACA
* *
26425018 -ATAATTACAATTAATATTTAATTACA
1 TTTAAATA-AATTAATATTTAATTACA
26425044 TTTAAATAAATT
1 TTTAAATAAATT
26425056 TATTAGTATT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
25 2 0.07
26 22 0.76
27 5 0.17
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (26 bp):
TTTAAATAAATTAATATTTAATTACA
Found at i:26427414 original size:22 final size:22
Alignment explanation
Indices: 26427380--26427426 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
26427370 TAATTTTTTC
*
26427380 AAATAATTTAATG-TGTTTAAA
1 AAATAATATAATGATGTTTAAA
26427401 AAATATATATAATGATGTTTAAA
1 AAATA-ATATAATGATGTTTAAA
26427424 AAA
1 AAA
26427427 ATCAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.22
22 7 0.30
23 11 0.48
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (22 bp):
AAATAATATAATGATGTTTAAA
Found at i:26436614 original size:3 final size:3
Alignment explanation
Indices: 26436606--26436641 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26436596 GTATTGATAT
26436606 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26436642 AGACTTGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26438021 original size:11 final size:11
Alignment explanation
Indices: 26438007--26438051 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
26437997 TTGATGTTGC
*
26438007 TTTGTTATCAT
1 TTTGTTATTAT
26438018 TTTGTTATTAT
1 TTTGTTATTAT
*
26438029 ATTGTTATTAT
1 TTTGTTATTAT
*
26438040 TTTGTTGTTAT
1 TTTGTTATTAT
26438051 T
1 T
26438052 GTTTGGATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.18, C:0.02, G:0.11, T:0.69
Consensus pattern (11 bp):
TTTGTTATTAT
Found at i:26443678 original size:12 final size:12
Alignment explanation
Indices: 26443661--26443686 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26443651 CCACTGTAAA
26443661 TTTTATATATTT
1 TTTTATATATTT
26443673 TTTTATATATTT
1 TTTTATATATTT
26443685 TT
1 TT
26443687 ATATGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATATATTT
Found at i:26448233 original size:15 final size:16
Alignment explanation
Indices: 26448202--26448240 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
26448192 GGAGGCCAAC
*
26448202 TTAGTTTTAGTTTAGT
1 TTAGTTTTCGTTTAGT
26448218 TTAGTTTTCG-TTAGT
1 TTAGTTTTCGTTTAGT
26448233 TTA-TTTTC
1 TTAGTTTTC
26448241 ATAATTCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 8 0.36
16 9 0.41
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTAGTTTTCGTTTAGT
Found at i:26450331 original size:19 final size:19
Alignment explanation
Indices: 26450307--26450343 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26450297 TATGCGCTAG
*
26450307 GATGCACCTCGTGTGCCAT
1 GATGCACCTCATGTGCCAT
*
26450326 GATGCACTTCATGTGCCA
1 GATGCACCTCATGTGCCA
26450344 GTAATGCGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.27
Consensus pattern (19 bp):
GATGCACCTCATGTGCCAT
Found at i:26455613 original size:33 final size:34
Alignment explanation
Indices: 26455558--26455626 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
26455548 ATTTGTTAAA
*
26455558 TTTTTAAAGTTTTAGAAAGTTAACATTG-TTGATT
1 TTTTTAAAGTTTTAGAAAGTTAA-ATTGATAGATT
* **
26455592 TTTTTGAAGTTTTAG-GTGTTAAATTGATAGATT
1 TTTTTAAAGTTTTAGAAAGTTAAATTGATAGATT
26455625 TT
1 TT
26455627 AAGCTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 4 0.13
33 12 0.40
34 14 0.47
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.52
Consensus pattern (34 bp):
TTTTTAAAGTTTTAGAAAGTTAAATTGATAGATT
Found at i:26462010 original size:20 final size:21
Alignment explanation
Indices: 26461985--26462028 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
26461975 GAAAAACTTG
*
26461985 TATAAATA-AATTAATTATAT
1 TATAAATACAATTAATAATAT
*
26462005 TATAAATACATTTAATAATAT
1 TATAAATACAATTAATAATAT
26462026 TAT
1 TAT
26462029 TATTTTGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TATAAATACAATTAATAATAT
Found at i:26462714 original size:32 final size:31
Alignment explanation
Indices: 26462678--26462744 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
26462668 TTTTTAGCTA
* *
26462678 AATTTGACCCCTAACCTTTTTAAAAATAGTCG
1 AATTTGACCACTAACC-TTTTAAAAAGAGTCG
* *
26462710 AATTTGACCATTAAGCTTTTAAAAAGAGTCG
1 AATTTGACCACTAACCTTTTAAAAAGAGTCG
26462741 AATT
1 AATT
26462745 GATTTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 18 0.58
32 13 0.42
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.34
Consensus pattern (31 bp):
AATTTGACCACTAACCTTTTAAAAAGAGTCG
Found at i:26462859 original size:23 final size:21
Alignment explanation
Indices: 26462826--26462870 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 21
26462816 TTCATGCTAA
26462826 TTTTTTGAA-TTTTATGAATTT
1 TTTTTTGAATTTTTAT-AATTT
26462847 TTTTTTGAAAATTTTTATAATTT
1 TTTTTTG--AATTTTTATAATTT
26462870 T
1 T
26462871 AAATTACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 7 0.33
23 8 0.38
24 6 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTTTTGAATTTTTATAATTT
Found at i:26466044 original size:17 final size:17
Alignment explanation
Indices: 26466019--26466089 Score: 97
Period size: 17 Copynumber: 4.2 Consensus size: 17
26466009 AATAAGTTTG
*
26466019 AATTTATTTTAAATTCA
1 AATTTATTTTAAATTTA
* *
26466036 AATTCATTTTGAATTTA
1 AATTTATTTTAAATTTA
*
26466053 AATTTACTTTAAATTTA
1 AATTTATTTTAAATTTA
*
26466070 AATTTATTTTAAATTAA
1 AATTTATTTTAAATTTA
26466087 AAT
1 AAT
26466090 AAAATTAAAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:26467282 original size:23 final size:23
Alignment explanation
Indices: 26467255--26467304 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
26467245 GCAACCACGT
* *
26467255 GCGACGGCGCGTGACGATGATGC
1 GCGACGGCGAGTGACGATGACGC
26467278 GCGACGGCGAGTGACGATGACGC
1 GCGACGGCGAGTGACGATGACGC
26467301 GCGA
1 GCGA
26467305 TAGACGACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.44, T:0.10
Consensus pattern (23 bp):
GCGACGGCGAGTGACGATGACGC
Found at i:26468014 original size:60 final size:59
Alignment explanation
Indices: 26467912--26468312 Score: 333
Period size: 59 Copynumber: 6.8 Consensus size: 59
26467902 CTAAACTATT
* * * * *
26467912 CAAAAATTA-TATTTTTACCCCCAAACATTT-TAAAATTTCATTTTTGACCTCGATTTTTCC
1 CAAAAATTACCATTTTTACCCTCGAAC-TTTCCAAAATTCCATTTTTGACC-CGATTTTT-C
* * * **
26467972 CAAAAGTTA-CATTTTTGCCCTCGAACTTTCCAAAATTCCATTTTTAACCCCTTTTTTTC
1 CAAAAATTACCATTTTTACCCTCGAACTTTCCAAAATTCCATTTTTGA-CCCGATTTTTC
* * *
26468031 CAAAAATTA-CATTTTTTACCCTTGAACTTTCCAAAATTCCATTTTTTATCTCGATTTTTC
1 CAAAAATTACCA-TTTTTACCCTCGAACTTTCCAAAATTCCATTTTTGA-CCCGATTTTTC
* * *
26468091 CAAAAATGACCA-TTTTACTCC-CGAACTTCCCAAAATTCCATTTTTGACCCTAATTTTTC
1 CAAAAATTACCATTTTTAC-CCTCGAACTTTCCAAAATTCCATTTTTGACCC-GATTTTTC
* * * *
26468150 CAAAAATTACCA-TTTTACCC-CTAAAC-TTCCAAAATTTCATTTTTAACCCTAGTTTTTTC
1 CAAAAATTACCATTTTTACCCTC-GAACTTTCCAAAATTCCATTTTTGACCC--GATTTTTC
* * *
26468209 CAAAAATTACCA-TTTTACTCTCGAAC-TTCTAAAAATTCCATTTTTGACCCCGATTATTC
1 CAAAAATTACCATTTTTACCCTCGAACTTTC-CAAAATTCCATTTTTGA-CCCGATTTTTC
* * * * *
26468268 CAAAAAGTATCA-TTTTACCCTCGGA-TGTCTAAAAATTCCATTTTT
1 CAAAAATTACCATTTTTACCCTCGAACTTTC-CAAAATTCCATTTTT
26468313 TAACCCCGAA
Statistics
Matches: 285, Mismatches: 44, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
58 25 0.09
59 146 0.51
60 107 0.38
61 7 0.02
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.41
Consensus pattern (59 bp):
CAAAAATTACCATTTTTACCCTCGAACTTTCCAAAATTCCATTTTTGACCCGATTTTTC
Found at i:26468097 original size:30 final size:30
Alignment explanation
Indices: 26467943--26468273 Score: 164
Period size: 30 Copynumber: 11.1 Consensus size: 30
26467933 CAAACATTTT
*
26467943 AAAATTTCATTTTTGACCTCGATTTTTCCCA
1 AAAATTCCATTTTTGACCTCGATTTTT-CCA
* * * **
26467974 AAAGTTACATTTTTGCCCTCGAACTTTCC-
1 AAAATTCCATTTTTGACCTCGATTTTTCCA
* * **
26468003 AAAATTCCATTTTTAACCCCTTTTTTTCCA
1 AAAATTCCATTTTTGACCTCGATTTTTCCA
* * * **
26468033 AAAATTACATTTTTTACCCTTGAACTTTCC-
1 AAAATTCCATTTTTGA-CCTCGATTTTTCCA
* *
26468063 AAAATTCCATTTTTTATCTCGATTTTTCCA
1 AAAATTCCATTTTTGACCTCGATTTTTCCA
* * ** *
26468093 AAAATGACCA-TTTT-ACTCCCGA-ACTTCCC
1 AAAAT-TCCATTTTTGAC-CTCGATTTTTCCA
*
26468122 AAAATTCCATTTTTGACC-CTAATTTTTCCA
1 AAAATTCCATTTTTGACCTC-GATTTTTCCA
* * ***
26468152 AAAATTACCA-TTTT-ACCCCTAAACTTCC-
1 AAAATT-CCATTTTTGACCTCGATTTTTCCA
* * * *
26468180 AAAATTTCATTTTTAACCCTAGTTTTTTCCA
1 AAAATTCCATTTTTGA-CCTCGATTTTTCCA
** *
26468211 AAAATTACCA-TTTT-ACTCTCGA-ACTTCTA
1 AAAATT-CCATTTTTGAC-CTCGATTTTTCCA
* *
26468240 AAAATTCCATTTTTGACCCCGATTATTCCA
1 AAAATTCCATTTTTGACCTCGATTTTTCCA
26468270 AAAA
1 AAAA
26468274 GTATCATTTT
Statistics
Matches: 220, Mismatches: 60, Indels: 41
0.69 0.19 0.13
Matches are distributed among these distances:
27 2 0.01
28 17 0.08
29 73 0.33
30 81 0.37
31 45 0.20
32 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.40
Consensus pattern (30 bp):
AAAATTCCATTTTTGACCTCGATTTTTCCA
Found at i:26468234 original size:118 final size:116
Alignment explanation
Indices: 26467912--26468287 Score: 396
Period size: 118 Copynumber: 3.2 Consensus size: 116
26467902 CTAAACTATT
* * ** * *
26467912 CAAAAATTATATTTTTACCCCCAAACATTTTAAAATTTCATTTTTGACCTCGATTTTTCCCAAAA
1 CAAAAATTACA-TTTTACCCCTAAACATTCCAAAATTTCATTTTTAACCTCG-TTTTTTCCAAAA
* * * * * *
26467977 GTTA-CATTTTTGCCCTCGAACTTTCCAAAATTCCATTTTTAACCCCTTTTTTTC
64 ATTACCA-TTTTACTCTCGAACTTCCCAAAATTCCATTTTTGA-CCCTATTTTTC
* * * * * * *
26468031 CAAAAATTACATTTTTTACCCTTGAACTTTCCAAAATTCCATTTTTTATCTCGATTTTTCCAAAA
1 CAAAAATTACA--TTTTACCCCTAAACATTCCAAAATTTCATTTTTAACCTCGTTTTTTCCAAAA
* *
26468096 ATGACCATTTTACTCCCGAACTTCCCAAAATTCCATTTTTGACCCTAATTTTTC
64 ATTACCATTTTACTCTCGAACTTCCCAAAATTCCATTTTTGACCCT-ATTTTTC
*
26468150 CAAAAATTACCATTTTACCCCTAAAC-TTCCAAAATTTCATTTTTAACCCTAGTTTTTTCCAAAA
1 CAAAAATTA-CATTTTACCCCTAAACATTCCAAAATTTCATTTTTAA-CCTCGTTTTTTCCAAAA
** * *
26468214 ATTACCATTTTACTCTCGAACTTCTAAAAATTCCATTTTTGACCCCGATTATTC
64 ATTACCATTTTACTCTCGAACTTCCCAAAATTCCATTTTTGA-CCCTATTTTTC
*
26468268 CAAAAAGTATCATTTTACCC
1 CAAAAATTA-CATTTTACCC
26468288 TCGGATGTCT
Statistics
Matches: 216, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
117 18 0.08
118 92 0.43
119 70 0.32
120 36 0.17
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.40
Consensus pattern (116 bp):
CAAAAATTACATTTTACCCCTAAACATTCCAAAATTTCATTTTTAACCTCGTTTTTTCCAAAAAT
TACCATTTTACTCTCGAACTTCCCAAAATTCCATTTTTGACCCTATTTTTC
Found at i:26468253 original size:29 final size:28
Alignment explanation
Indices: 26468230--26468342 Score: 79
Period size: 30 Copynumber: 3.8 Consensus size: 28
26468220 ATTTTACTCT
*
26468230 CGAACTTCTAAAAATTCCATTTTTGACCC
1 CGAA-TTCTAAAAATTCCATTTTTAACCC
*
26468259 CGATTATTCCAAAAAGTAT-CA-TTTT-ACCC
1 CGA--ATTCTAAAAA-T-TCCATTTTTAACCC
*
26468288 TCGGATGTCTAAAAATTCCATTTTTTAACCC
1 -CGAAT-TCTAAAAATTCCA-TTTTTAACCC
*
26468319 CGAACCTTCTAAAAATACCATTTT
1 CGAA--TTCTAAAAATTCCATTTT
26468343 GCCCTTGAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
27 1 0.01
28 5 0.07
29 14 0.21
30 25 0.37
31 20 0.30
32 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (28 bp):
CGAATTCTAAAAATTCCATTTTTAACCC
Found at i:26468310 original size:28 final size:28
Alignment explanation
Indices: 26468210--26468374 Score: 74
Period size: 29 Copynumber: 5.6 Consensus size: 28
26468200 AGTTTTTTCC
* *
26468210 AAAAATTACCATTTTACTCTCGAACTTCT
1 AAAAATT-CCATTTTACCCTCGGACTTCT
* *
26468239 AAAAATTCCATTTTTGACCC-C-GATTATTCC
1 AAAAATTCCA-TTTT-ACCCTCGGA--CTTCT
26468269 AAAAAGTAT-CATTTTACCCTCGGA-TGTCT
1 AAAAA-T-TCCATTTTACCCTCGGACT-TCT
*
26468298 AAAAATTCCATTTTTTAACCC-CGAACCTTCT
1 AAAAATTCCA--TTTT-ACCCTCGGA-CTTCT
* * * *
26468329 AAAAATACCATTTTGCCCT-TGAGTGTCT
1 AAAAATTCCATTTTACCCTCGGACT-TCT
26468357 -AAAATTACCATTTTACCC
1 AAAAATT-CCATTTTACCC
26468375 CCGGGCATCC
Statistics
Matches: 105, Mismatches: 13, Indels: 37
0.68 0.08 0.24
Matches are distributed among these distances:
27 7 0.07
28 25 0.24
29 27 0.26
30 23 0.22
31 21 0.20
32 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (28 bp):
AAAAATTCCATTTTACCCTCGGACTTCT
Found at i:26468340 original size:177 final size:176
Alignment explanation
Indices: 26467999--26468342 Score: 389
Period size: 177 Copynumber: 1.9 Consensus size: 176
26467989 CCCTCGAACT
* *
26467999 TTCCAAAATTCCATTTTTAACCCCTTTTTTTCCAAAAATTACATTTTTTACCCTTGAACTTTCCA
1 TTCCAAAATTCCATTTTTAACCCCTTTTTTTCCAAAAATTACA-TTTTTACCCTCGAACTTTCAA
* * * * *
26468064 AAATTCCATTTTTTATCTCGATTTTTCCAAAAATGACCATTTTACTCCCGAACTTCCCAAAATTC
65 AAATTCCATTTTTGACCCCGATTATTCCAAAAATGACCATTTTACTCCCGAACTTCCAAAAATTC
* * **
26468129 CATTTTTGACCCTAATTTTTCCAAAAATTACCATTTTACCCCTAAAC
130 CATTTTTAACCCGAATCCTTCCAAAAATTACCATTTTACCCCTAAAC
* *
26468176 TTCCAAAATTTCATTTTTAA-CCCTAGTTTTTTCCAAAAATTACCA-TTTTACTCTCGAAC-TTC
1 TTCCAAAATTCCATTTTTAACCCCT--TTTTTTCCAAAAATTA-CATTTTTACCCTCGAACTTTC
* * *
26468238 TAAAAATTCCATTTTTGACCCCGATTATTCCAAAAA-GTATCATTTTAC-CCTCGGA-TGTCTAA
63 -AAAAATTCCATTTTTGACCCCGATTATTCCAAAAATG-ACCATTTTACTCC-CGAACT-TCCAA
*
26468300 AAATTCCATTTTTTAACCCCGAA-CCTTCTAAAAA-TACCATTTT
124 AAATTCCA-TTTTTAA-CCCGAATCCTTCCAAAAATTACCATTTT
26468343 GCCCTTGAGT
Statistics
Matches: 141, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
176 11 0.08
177 93 0.66
178 30 0.21
179 7 0.05
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.40
Consensus pattern (176 bp):
TTCCAAAATTCCATTTTTAACCCCTTTTTTTCCAAAAATTACATTTTTACCCTCGAACTTTCAAA
AATTCCATTTTTGACCCCGATTATTCCAAAAATGACCATTTTACTCCCGAACTTCCAAAAATTCC
ATTTTTAACCCGAATCCTTCCAAAAATTACCATTTTACCCCTAAAC
Found at i:26468341 original size:59 final size:61
Alignment explanation
Indices: 26468206--26468370 Score: 171
Period size: 59 Copynumber: 2.8 Consensus size: 61
26468196 CCCTAGTTTT
* * * * **
26468206 TTCCAAAAATTACCATTTTACTCTCGAACT-TCTAAAAATTCCA-TTTTTGACCCCGATTA
1 TTCCAAAAAGTACCATTTTACCCTCGGACTGTCTAAAAATTCCATTTTTTAACCCCGAACA
* *
26468265 TTCCAAAAAGTATCATTTTACCCTCGGA-TGTCTAAAAATTCCATTTTTTAACCCCGAACC
1 TTCCAAAAAGTACCATTTTACCCTCGGACTGTCTAAAAATTCCATTTTTTAACCCCGAACA
* * * *
26468325 TTCTAAAAA-TACCATTTTGCCCT-TGAGTGTCT-AAAATTACCATTTT
1 TTCCAAAAAGTACCATTTTACCCTCGGACTGTCTAAAAATT-CCATTTT
26468371 ACCCCCGGGC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
58 9 0.10
59 61 0.68
60 20 0.22
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (61 bp):
TTCCAAAAAGTACCATTTTACCCTCGGACTGTCTAAAAATTCCATTTTTTAACCCCGAACA
Found at i:26471048 original size:17 final size:17
Alignment explanation
Indices: 26471023--26471056 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26471013 ATTTGAGACA
*
26471023 AAAATCTATTATAGATG
1 AAAAGCTATTATAGATG
26471040 AAAAGCTATTATAGATG
1 AAAAGCTATTATAGATG
26471057 GTAAGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (17 bp):
AAAAGCTATTATAGATG
Found at i:26474870 original size:14 final size:14
Alignment explanation
Indices: 26474851--26474883 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26474841 ATTTAAACAT
*
26474851 AAATTTTAAATCCA
1 AAATTTTAAACCCA
26474865 AAATTTTAAACCCA
1 AAATTTTAAACCCA
26474879 AAATT
1 AAATT
26474884 CAAAGTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATTTTAAACCCA
Found at i:26475870 original size:6 final size:6
Alignment explanation
Indices: 26475863--26475921 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
26475853 AGAAAAAAGA
* * *
26475863 AGAAGA AGAAGG AGAAGG AGAAGG AGAAGGG TGAACGG -GAAGG AGAGAAG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAA-GG AGAA-GG AGAAGG AGA-AGG
26475913 AGAAGG AGA
1 AGAAGG AGA
26475922 GGAAAAAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 2 0.04
6 31 0.69
7 12 0.27
ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02
Consensus pattern (6 bp):
AGAAGG
Found at i:26476030 original size:17 final size:17
Alignment explanation
Indices: 26476008--26476041 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26475998 GAAAAAATTT
*
26476008 ATTTAAATGTTATTTAA
1 ATTTAAATATTATTTAA
26476025 ATTTAAATATTATTTAA
1 ATTTAAATATTATTTAA
26476042 TTATTGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTAAATATTATTTAA
Found at i:26476194 original size:27 final size:27
Alignment explanation
Indices: 26476164--26476242 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
26476154 AGATATAATC
26476164 TAATTTTTATTTGAAATATAAAATATA
1 TAATTTTTATTTGAAATATAAAATATA
* * * *
26476191 TAATCATTTATTTG---T-TTAACTAAA
1 TAAT-TTTTATTTGAAATATAAAATATA
*
26476215 TTATTTTTATTTGAAATATAAAATATA
1 TAATTTTTATTTGAAATATAAAATATA
26476242 T
1 T
26476243 TGTTTAAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
23 8 0.21
24 9 0.24
25 1 0.03
26 1 0.03
27 11 0.29
28 8 0.21
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.51
Consensus pattern (27 bp):
TAATTTTTATTTGAAATATAAAATATA
Found at i:26476837 original size:30 final size:31
Alignment explanation
Indices: 26476780--26476838 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
26476770 TGAATCTTTT
* *
26476780 AATTTTAAATTTTCAATTAATAATAAATTTC
1 AATTTAAAATTTTCAATAAATAATAAATTTC
26476811 AATTTAAAATTTT-AA-AAATAATTAAATT
1 AATTTAAAATTTTCAATAAATAA-TAAATT
26476839 AGTTTTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 8 0.32
31 12 0.48
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (31 bp):
AATTTAAAATTTTCAATAAATAATAAATTTC
Found at i:26479273 original size:6 final size:6
Alignment explanation
Indices: 26479262--26479290 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26479252 TAGAATTAAC
26479262 TATGTT TATGTT TATGTT TATGTT TATGT
1 TATGTT TATGTT TATGTT TATGTT TATGT
26479291 ATGCAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TATGTT
Found at i:26479419 original size:26 final size:26
Alignment explanation
Indices: 26479364--26479439 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
26479354 GCTAAACCTC
**
26479364 ATTAAATAAATTCAAACATAAAAATT
1 ATTAAATAAATTCAAACATAAAAAGA
** *
26479390 ATTAAATAAATTCAAATTTAAATAGA
1 ATTAAATAAATTCAAACATAAAAAGA
* *
26479416 ATTAATTCCAAATTCAATCATAAA
1 ATTAAAT--AAATTCAAACATAAA
26479440 CTTAATTAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 27 0.69
28 12 0.31
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (26 bp):
ATTAAATAAATTCAAACATAAAAAGA
Found at i:26482365 original size:27 final size:26
Alignment explanation
Indices: 26482305--26482371 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
26482295 ATAGTTTTGA
26482305 CAAAGGCACCACTAGTGCCGCCTACC
1 CAAAGGCACCACTAGTGCCGCCTACC
* * *
26482331 CAGTAGGCACCATTGGTGCCGCCTACC
1 CA-AAGGCACCACTAGTGCCGCCTACC
26482358 CTAAAGGCACCACT
1 C-AAAGGCACCACT
26482372 TGTCAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.06
27 31 0.91
28 1 0.03
ACGTcount: A:0.25, C:0.39, G:0.21, T:0.15
Consensus pattern (26 bp):
CAAAGGCACCACTAGTGCCGCCTACC
Found at i:26482404 original size:16 final size:15
Alignment explanation
Indices: 26482380--26482415 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
26482370 CTTGTCAAAT
26482380 TTTAATTTTATTTAA
1 TTTAATTTTATTTAA
*
26482395 TTTAATTTTTTTTTAA
1 TTTAA-TTTTATTTAA
26482411 TTTAA
1 TTTAA
26482416 AAATATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTAATTTTATTTAA
Done.