Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032249.1 Gossypioides kirkii chromosome KI_07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37252039
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 2100 characters in sequence are not A, C, G, or T
File 93 of 120
Found at i:26672257 original size:1 final size:1
Alignment explanation
Indices: 26672251--26672276 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
26672241 ATTAAAATTT
26672251 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
26672277 GTTGGGCAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26685555 original size:30 final size:30
Alignment explanation
Indices: 26685521--26685580 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
26685511 TTTTTTCACG
*
26685521 TCGTATCATATGAGTATATGTTTATATATT
1 TCGTATCATATGAGTATATATTTATATATT
*
26685551 TCGTATCATATTAGTATATATTTATATATT
1 TCGTATCATATGAGTATATATTTATATATT
26685581 AGTATATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.52
Consensus pattern (30 bp):
TCGTATCATATGAGTATATATTTATATATT
Found at i:26685581 original size:18 final size:18
Alignment explanation
Indices: 26685558--26685594 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26685548 ATTTCGTATC
26685558 ATATTAGTATATATTTAT
1 ATATTAGTATATATTTAT
*
26685576 ATATTAGTATATGTTTAT
1 ATATTAGTATATATTTAT
26685594 A
1 A
26685595 CTTGTAACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATTAGTATATATTTAT
Found at i:26701343 original size:29 final size:29
Alignment explanation
Indices: 26701309--26701409 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
26701299 AAGTACAGGA
*
26701309 ACTAAAAGGAATTAAATTAAAATACAAAT
1 ACTAAAAAGAATTAAATTAAAATACAAAT
*
26701338 ACTAAATCCATA-ATATTCAAATTTTAAAAGTACAGGA-
1 ACTAAA---A-AGA-ATT-AAA--TTAAAA-TACA-AAT
26701375 ACTAAAAAGAATTAAATTAAAATACAAAT
1 ACTAAAAAGAATTAAATTAAAATACAAAT
26701404 ACTAAA
1 ACTAAA
26701410 TCCATAACTT
Statistics
Matches: 57, Mismatches: 3, Indels: 24
0.68 0.04 0.29
Matches are distributed among these distances:
28 1 0.02
29 16 0.28
30 6 0.11
32 5 0.09
33 7 0.12
34 5 0.09
36 6 0.11
37 10 0.18
38 1 0.02
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (29 bp):
ACTAAAAAGAATTAAATTAAAATACAAAT
Found at i:26701364 original size:66 final size:66
Alignment explanation
Indices: 26701283--26701416 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
26701273 TAAGGATAAA
*
26701283 AATATTCAAATTTTAAAAGTACAGGAACTAAAAGGAATTAAATTAAAATACAAATACTAAATCCA
1 AATATTCAAATTTTAAAAGTACAGGAACTAAAAAGAATTAAATTAAAATACAAATACTAAATCCA
26701348 T
66 T
26701349 AATATTCAAATTTTAAAAGTACAGGAACTAAAAAGAATTAAATTAAAATACAAATACTAAATCCA
1 AATATTCAAATTTTAAAAGTACAGGAACTAAAAAGAATTAAATTAAAATACAAATACTAAATCCA
26701414 T
66 T
26701415 AA
1 AA
26701417 CTTACGTAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (66 bp):
AATATTCAAATTTTAAAAGTACAGGAACTAAAAAGAATTAAATTAAAATACAAATACTAAATCCA
T
Found at i:26707499 original size:45 final size:45
Alignment explanation
Indices: 26707460--26707554 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 45
26707450 AGAAGATGAT
* *
26707460 GAAGAATATCCTTTGATGGAATCATTATATCCA-CTAGAAGAAAAC
1 GAAGAATATCCATTGATGGAATCATTACATCCAGC-AGAAGAAAAC
26707505 GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC
1 GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC
26707550 GAAGA
1 GAAGA
26707555 TGAAGAAGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 46 0.98
46 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (45 bp):
GAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAAC
Found at i:26713102 original size:19 final size:20
Alignment explanation
Indices: 26713080--26713122 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
26713070 TAATAATATT
26713080 TAAAAATA-AAAAATTCAAA
1 TAAAAATATAAAAATTCAAA
26713099 TAAAAATATAAAAATTCAAA
1 TAAAAATATAAAAATTCAAA
26713119 -AAAA
1 TAAAA
26713123 GCATAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATATAAAAATTCAAA
Found at i:26713128 original size:19 final size:20
Alignment explanation
Indices: 26713088--26713129 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26713078 TTTAAAAATA
*
26713088 AAAAATTCAAATAAAAATAT
1 AAAAATTCAAATAAAAACAT
*
26713108 AAAAATTCAAA-AAAAGCAT
1 AAAAATTCAAATAAAAACAT
26713127 AAA
1 AAA
26713130 GCACCGGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAAATTCAAATAAAAACAT
Found at i:26714297 original size:9 final size:9
Alignment explanation
Indices: 26714283--26714315 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
26714273 GTTAAACGAA
26714283 TCGAGTTAT
1 TCGAGTTAT
26714292 TCGAGTTAAT
1 TCGAGTT-AT
26714302 T-GAGTTAT
1 TCGAGTTAT
26714310 TCGAGT
1 TCGAGT
26714316 CAACTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.14
9 16 0.73
10 3 0.14
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:26715719 original size:88 final size:88
Alignment explanation
Indices: 26715548--26715756 Score: 215
Period size: 88 Copynumber: 2.4 Consensus size: 88
26715538 ACTACCACTG
* * * * *
26715548 GGTTATGGATGCACAACAAAATTTGAAGATAAAATCTATCACTGGGCTGTGGGTGCACAACAAAA
1 GGTTATGGATGCACAACAAAATTCGAAGATAAAATCTATCACTAGACTGTGGATACACAACAAAA
* *
26715613 TTCATAGGTGAAAATTGTCAATA
66 TTCACAGATGAAAATTGTCAATA
* * * * *
26715636 GGTTGTGGATGCATAGCAAAATTCGTAGATAAAATCT-GCTACTAGACTGTGGATACACAACAAA
1 GGTTATGGATGCACAACAAAATTCGAAGATAAAATCTATC-ACTAGACTGTGGATACACAACAAA
* *
26715700 ATTCGCAGAT-AAAATTTGTCATTA
65 ATTCACAGATGAAAA-TTGTCAATA
* * * * *
26715724 GGCTATGGATACAAAACAAAATTTGCAGATAAA
1 GGTTATGGATGCACAACAAAATTCGAAGATAAA
26715757 TTGTTAATCT
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
87 5 0.05
88 93 0.95
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (88 bp):
GGTTATGGATGCACAACAAAATTCGAAGATAAAATCTATCACTAGACTGTGGATACACAACAAAA
TTCACAGATGAAAATTGTCAATA
Found at i:26715733 original size:44 final size:44
Alignment explanation
Indices: 26715553--26715756 Score: 187
Period size: 44 Copynumber: 4.6 Consensus size: 44
26715543 CACTGGGTTA
* * * *
26715553 TGGATGCACAACAAAATTTGAAGATAAAATCTATCACTGGGCTG
1 TGGATGCACAACAAAATTCGCAGATAAAATCTGTCACTAGGCTG
* ** * * *
26715597 TGGGTGCACAACAAAATTCATAGGTGAAAAT-TGTCAATAGGTTG
1 TGGATGCACAACAAAATTCGCAGAT-AAAATCTGTCACTAGGCTG
* * * *
26715641 TGGATGCATAGCAAAATTCGTAGATAAAATCTG-CTACTAGACTG
1 TGGATGCACAACAAAATTCGCAGATAAAATCTGTC-ACTAGGCTG
* * * *
26715685 TGGATACACAACAAAATTCGCAGATAAAATTTGTCATTAGGCTA
1 TGGATGCACAACAAAATTCGCAGATAAAATCTGTCACTAGGCTG
* * *
26715729 TGGATACAAAACAAAATTTGCAGATAAA
1 TGGATGCACAACAAAATTCGCAGATAAA
26715757 TTGTTAATCT
Statistics
Matches: 129, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
43 6 0.05
44 117 0.91
45 6 0.05
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (44 bp):
TGGATGCACAACAAAATTCGCAGATAAAATCTGTCACTAGGCTG
Found at i:26717237 original size:52 final size:52
Alignment explanation
Indices: 26717136--26717237 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 52
26717126 ATACTAGCGC
* ** * *
26717136 TTTAATCGTTAAGATTGAAGTTTATTCTTGCTTAGTTTTAAGTCTTAACCCT
1 TTTAATCGTTAAGAATGAAGCCTATTCTTGCTTAGTTTTAACTCCTAACCCT
* *
26717188 TTTAATCGTTAGGAATGAAGCCTATTCTTGCTTAGTTTTTACTCCTAACC
1 TTTAATCGTTAAGAATGAAGCCTATTCTTGCTTAGTTTTAACTCCTAACC
26717238 GTATTTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.45
Consensus pattern (52 bp):
TTTAATCGTTAAGAATGAAGCCTATTCTTGCTTAGTTTTAACTCCTAACCCT
Found at i:26723442 original size:5 final size:5
Alignment explanation
Indices: 26723432--26723460 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
26723422 TTCCAGATTT
26723432 GAATA GAATA GAATA GAATA GAATA GAAT
1 GAATA GAATA GAATA GAATA GAATA GAAT
26723461 TAGATTTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (5 bp):
GAATA
Found at i:26732923 original size:15 final size:16
Alignment explanation
Indices: 26732899--26732940 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
26732889 CAATTGGCTT
*
26732899 TTAATTTTTTTTCA-C
1 TTAATGTTTTTTCATC
* *
26732914 TTAATGTTTTTTTATT
1 TTAATGTTTTTTCATC
26732930 TTAATGTTTTT
1 TTAATGTTTTT
26732941 ATTTTTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (16 bp):
TTAATGTTTTTTCATC
Found at i:26732925 original size:16 final size:16
Alignment explanation
Indices: 26732899--26732940 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
26732889 CAATTGGCTT
26732899 TTAAT-TTTTTTTCA-C
1 TTAATGTTTTTTT-ATC
*
26732914 TTAATGTTTTTTTATT
1 TTAATGTTTTTTTATC
26732930 TTAATGTTTTT
1 TTAATGTTTTT
26732941 ATTTTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (16 bp):
TTAATGTTTTTTTATC
Found at i:26738589 original size:18 final size:18
Alignment explanation
Indices: 26738552--26738636 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 18
26738542 CATAGTCTGG
*
26738552 CAAATTAATACAGATT-AC
1 CAAATTAACACA-ATTCAC
26738570 CAAATTAACACAATTCAC
1 CAAATTAACACAATTCAC
* * **
26738588 CATAA-TAATATAATTCGT
1 CA-AATTAACACAATTCAC
* *
26738606 CAAGTTAACACGATTCA-
1 CAAATTAACACAATTCAC
26738623 C-AATATAACACAAT
1 CAAAT-TAACACAAT
26738637 ACACATATAT
Statistics
Matches: 51, Mismatches: 12, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
16 2 0.04
17 13 0.25
18 34 0.67
19 2 0.04
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAATTAACACAATTCAC
Found at i:26738633 original size:17 final size:18
Alignment explanation
Indices: 26738611--26738648 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26738601 TTCGTCAAGT
* *
26738611 TAACACGATTCACA-ATA
1 TAACACAATACACATATA
26738628 TAACACAATACACATATA
1 TAACACAATACACATATA
26738646 TAA
1 TAA
26738649 TTGGCTCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.24
Consensus pattern (18 bp):
TAACACAATACACATATA
Found at i:26744891 original size:29 final size:31
Alignment explanation
Indices: 26744831--26744892 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
26744821 CAACAAAACT
** *
26744831 TAATTAATATCATTATTATTTTTTTTGGTGAA
1 TAATTAATATCATTATTA-TTTTAGTGATGAA
26744863 TAATTAATATCATTATTA-TTTAGT-ATGAA
1 TAATTAATATCATTATTATTTTAGTGATGAA
26744892 T
1 T
26744893 TTTGACATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.19
30 4 0.15
32 18 0.67
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.53
Consensus pattern (31 bp):
TAATTAATATCATTATTATTTTAGTGATGAA
Found at i:26745660 original size:13 final size:14
Alignment explanation
Indices: 26745642--26745670 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26745632 ATTAGAAAAT
26745642 AATTAAAAT-TTTA
1 AATTAAAATATTTA
26745655 AATTAAAATATTTA
1 AATTAAAATATTTA
26745669 AA
1 AA
26745671 AATGTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:26751310 original size:62 final size:60
Alignment explanation
Indices: 26751198--26751350 Score: 222
Period size: 62 Copynumber: 2.5 Consensus size: 60
26751188 CCATTTTTTT
26751198 TTTATT-TTTATGAATATAAATAAAT--ATAAAATAATATTAATTTTATTTTATTATTTA
1 TTTATTATTTATGAATATAAATAAATAAATAAAATAATATTAATTTTATTTTATTATTTA
* *
26751255 TTTATTATTGTATGAATATAAATAAATAAATGTAAATAATATTTATTTTATTTTATTATTTA
1 TTTATTATT-TATGAATATAAATAAATAAAT-AAAATAATATTAATTTTATTTTATTATTTA
* *
26751317 TTTATTATTTTGTGAATATAGATAAATAAATAAA
1 TTTATTA-TTTATGAATATAAATAAATAAATAAA
26751351 TAAATAACAA
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
57 6 0.07
58 2 0.02
59 17 0.20
61 4 0.05
62 54 0.64
63 2 0.02
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.52
Consensus pattern (60 bp):
TTTATTATTTATGAATATAAATAAATAAATAAAATAATATTAATTTTATTTTATTATTTA
Found at i:26759216 original size:23 final size:24
Alignment explanation
Indices: 26759170--26759216 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
26759160 GACTTTATTT
*
26759170 ATTTTTCATTGTAAAATTTGATTA
1 ATTTTTCATTGTAAAATTTCATTA
**
26759194 ATTTTTCATT-TAAGTTTTCATTA
1 ATTTTTCATTGTAAAATTTCATTA
26759217 CCAATTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
ATTTTTCATTGTAAAATTTCATTA
Found at i:26761649 original size:19 final size:19
Alignment explanation
Indices: 26761617--26761659 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26761607 TATCTTTATT
*
26761617 AATTTAAAATTTAAA-AAA
1 AATTTAAAACTTAAATAAA
26761635 AATTTAAAAACTTAAATAAA
1 AATTT-AAAACTTAAATAAA
26761655 AATTT
1 AATTT
26761660 TCTATTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 9 0.41
20 8 0.36
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
AATTTAAAACTTAAATAAA
Found at i:26765738 original size:58 final size:57
Alignment explanation
Indices: 26765670--26766030 Score: 440
Period size: 58 Copynumber: 6.2 Consensus size: 57
26765660 CCCGAGGGCG
* *
26765670 AAATGGTAATTTTGGTTGAAATTGGGTCAAAACA-GGGATTTTGGAAAGTTTGGGGGTA
1 AAATGGTAATTTTGG-TGAAATTGGGTCAAAA-ATGGAATTTTGGAAAGTTTAGGGGTA
* * * * *
26765728 AAATGATAATTTTGGTAAAATTAGGGT-TAAAATGGAATTTTAGAAAGTTCAGGGGTA
1 AAATGGTAATTTTGGTGAAATT-GGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * * ** *
26765785 AAATGGTAATTTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTTAAAGATA
1 AAATGGTAA--TTTTGGTGAAAT-TGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
*
26765845 AAATGGTAATTTTGGTAAAATTGGGGTCAAAAATGGAATTTTGGAAA-TTTAGGGGTA
1 AAATGGTAATTTTGGTGAAATT-GGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * *
26765902 AAATGGTAATTTTGGTGAACTCGAGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTA
1 AAATGGTAATTTTGGTGAAATTG-GGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* **
26765960 AAATGGTAATTTTTGATGAAATCAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
1 AAATGGTAA-TTTTGGTGAAATTGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
26766018 AAATGGTAATTTT
1 AAATGGTAATTTT
26766031 AGAAAGTTTT
Statistics
Matches: 262, Mismatches: 31, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
56 2 0.01
57 90 0.34
58 112 0.43
59 26 0.10
60 32 0.12
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.34
Consensus pattern (57 bp):
AAATGGTAATTTTGGTGAAATTGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
Found at i:26765739 original size:29 final size:28
Alignment explanation
Indices: 26765707--26766088 Score: 197
Period size: 29 Copynumber: 13.2 Consensus size: 28
26765697 CAAAACAGGG
*
26765707 ATTTTGGAAAGTTTGGGGGTAAAATGATA
1 ATTTTGGAAAGTTTAGGGGTAAAATG-TA
* * *
26765736 ATTTTGGTAAA-ATTAGGGTTAAAATGGA
1 ATTTTGG-AAAGTTTAGGGGTAAAATGTA
* *
26765764 ATTTTAGAAAGTTCAGGGGTAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* *
26765793 ATTTTTTGGTGAAA---TCGGGGTTAAAAATGGA
1 A--TTTT-G-GAAAGTTTAGGGG-T-AAAATGTA
* ** *
26765824 ATTTTGGAAAATTTAAAGATAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* *
26765853 ATTTTGGTAAA-ATT-GGGGTCAAAAATGGA
1 ATTTTGG-AAAGTTTAGGGGT--AAAATGTA
26765882 ATTTTGGAAA-TTTAGGGGTAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* * ** *** *
26765910 ATTTTGGTGAACTCGAGGTCAAAAATGGA
1 ATTTTGG-AAAGTTTAGGGGTAAAATGTA
*
26765939 ATTTTGGAAAGTTTGGGGGTAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* *** *
26765968 ATTTTTGATGAAA--TCAGGTCAAAAATGGA
1 A-TTTTG--GAAAGTTTAGGGGTAAAATGTA
26765997 ATTTTGGAAAGTTTAGGGGTAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* * * * *
26766026 ATTTTAGAAAGTTTTGAAGTTAAAATATA
1 ATTTTGGAAAGTTTAG-GGGTAAAATGTA
*
26766055 ATTTTGAAAAGTTTAGGGGTCAAAATGTA
1 ATTTTGGAAAGTTTAGGGGT-AAAATGTA
26766084 ATTTT
1 ATTTT
26766089 CAATTAGTTT
Statistics
Matches: 261, Mismatches: 63, Indels: 58
0.68 0.16 0.15
Matches are distributed among these distances:
26 4 0.02
27 12 0.05
28 66 0.25
29 112 0.43
30 46 0.18
31 8 0.03
32 9 0.03
33 4 0.02
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (28 bp):
ATTTTGGAAAGTTTAGGGGTAAAATGTA
Found at i:26766051 original size:58 final size:58
Alignment explanation
Indices: 26765670--26766088 Score: 426
Period size: 58 Copynumber: 7.2 Consensus size: 58
26765660 CCCGAGGGCG
* * *
26765670 AAATGGTAATTTTGGTTGAAATTG-GGTCAAAACA-GGGATTTTGGAAAGTTTGGGGGTA
1 AAATGGTAATTTTGG-TAAAATTGAGGTCAAAA-ATGGAATTTTGGAAAGTTTAGGGGTA
* * * *
26765728 AAATGATAATTTTGGTAAAATT-AGGGT-TAAAATGGAATTTTAGAAAGTTCAGGGGTA
1 AAATGGTAATTTTGGTAAAATTGA-GGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * * * * ** *
26765785 AAATGGTAATTTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAATTTAAAGATA
1 AAATGGTAA--TTTTGGTAAAATTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
*
26765845 AAATGGTAATTTTGGTAAAATTGGGGTCAAAAATGGAATTTTGGAAA-TTTAGGGGTA
1 AAATGGTAATTTTGGTAAAATTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * * *
26765902 AAATGGTAATTTTGGTGAACTCGAGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTA
1 AAATGGTAATTTTGGTAAAATTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * *
26765960 AAATGGTAATTTTTGATGAAA-TCAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
1 AAATGGTAA-TTTTGGTAAAATTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
* * * * *
26766018 AAATGGTAATTTTAG-AAAGTTTTGAAGTTAAAATAT--AATTTTGAAAAGTTTAGGGGTCA
1 AAATGGTAATTTTGGTAAA--ATTGAGGTCAAAA-ATGGAATTTTGGAAAGTTTAGGGGT-A
26766077 AAAT-GTAATTTT
1 AAATGGTAATTTT
26766089 CAATTAGTTT
Statistics
Matches: 305, Mismatches: 42, Indels: 28
0.81 0.11 0.07
Matches are distributed among these distances:
56 3 0.01
57 91 0.30
58 141 0.46
59 36 0.12
60 34 0.11
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (58 bp):
AAATGGTAATTTTGGTAAAATTGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTA
Found at i:26766104 original size:30 final size:30
Alignment explanation
Indices: 26766004--26766171 Score: 180
Period size: 30 Copynumber: 5.7 Consensus size: 30
26765994 GGAATTTTGG
* * *
26766004 AAAGTTTAGGGGT-AAAATGGTAATTTT-AG
1 AAAGTTTTGGGGTCAAAAT-ATAATTTTCAA
** * *
26766033 AAAGTTTTGAAGTTAAAATATAATTTT-GA
1 AAAGTTTTGGGGTCAAAATATAATTTTCAA
* *
26766062 AAAGTTTAGGGGTCAAAATGTAATTTTCAA
1 AAAGTTTTGGGGTCAAAATATAATTTTCAA
**
26766092 TTAGTTTTGGGGTCAAAATATAATTTTCAA
1 AAAGTTTTGGGGTCAAAATATAATTTTCAA
** *
26766122 AAAGTTTTGGTATCAAAATATAATTTTAAA
1 AAAGTTTTGGGGTCAAAATATAATTTTCAA
26766152 AAAGTTTTGGGGTCAAAATA
1 AAAGTTTTGGGGTCAAAATA
26766172 CCAATTCTGG
Statistics
Matches: 114, Mismatches: 23, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
29 39 0.34
30 75 0.66
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (30 bp):
AAAGTTTTGGGGTCAAAATATAATTTTCAA
Found at i:26767388 original size:10 final size:10
Alignment explanation
Indices: 26767369--26767414 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
26767359 CGGTTTTTTT
26767369 TTAATATTTA
1 TTAATATTTA
*
26767379 TTATTATTTA
1 TTAATATTTA
26767389 TTAATA-TTA
1 TTAATATTTA
26767398 TTAATATTTCA
1 TTAATATTT-A
26767409 TTAATA
1 TTAATA
26767415 CCTATTAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 9 0.28
10 16 0.50
11 7 0.22
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (10 bp):
TTAATATTTA
Found at i:26768176 original size:17 final size:17
Alignment explanation
Indices: 26768156--26768215 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
26768146 AAATCATTTT
*
26768156 AATTCAAAATAAATTCA
1 AATTTAAAATAAATTCA
* *
26768173 AATTTAATATAAATTTA
1 AATTTAAAATAAATTCA
26768190 AATTTAAAATAAATT-A
1 AATTTAAAATAAATTCA
26768206 AGATTTAAAA
1 A-ATTTAAAA
26768216 ATTAAAAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
16 2 0.05
17 36 0.95
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (17 bp):
AATTTAAAATAAATTCA
Found at i:26774750 original size:28 final size:30
Alignment explanation
Indices: 26774709--26774770 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
26774699 AATTTTGCTA
26774709 TTAGTTTCTATA-TTTTT-ATTGATCAATT
1 TTAGTTTCTATATTTTTTAATTGATCAATT
*
26774737 TTAGTTTCTGTATTTTTTGAATTGATCAATT
1 TTAGTTTCTATATTTTTT-AATTGATCAATT
26774768 TTA
1 TTA
26774771 ATTTTGATCC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 11 0.37
29 5 0.17
31 14 0.47
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.60
Consensus pattern (30 bp):
TTAGTTTCTATATTTTTTAATTGATCAATT
Found at i:26783305 original size:34 final size:34
Alignment explanation
Indices: 26783261--26783330 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
26783251 TAAATTTGAG
26783261 TAGAAATTTTCCTGAAAGGATATTTTAATCCCAT
1 TAGAAATTTTCCTGAAAGGATATTTTAATCCCAT
*
26783295 TAGAATTTTTCCTGAAAGGATATTTTAATCCCAT
1 TAGAAATTTTCCTGAAAGGATATTTTAATCCCAT
26783329 TA
1 TA
26783331 TTTGAATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (34 bp):
TAGAAATTTTCCTGAAAGGATATTTTAATCCCAT
Found at i:26788101 original size:16 final size:17
Alignment explanation
Indices: 26788067--26788107 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
26788057 GTGAGTGCAG
*
26788067 TTATTTCAAATTCTTTT
1 TTATTGCAAATTCTTTT
*
26788084 TTTTTGCAAATT-TTTT
1 TTATTGCAAATTCTTTT
26788100 TTATTGCA
1 TTATTGCA
26788108 GAACTGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.22, C:0.10, G:0.05, T:0.63
Consensus pattern (17 bp):
TTATTGCAAATTCTTTT
Found at i:26793483 original size:12 final size:12
Alignment explanation
Indices: 26793466--26793490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26793456 TTAGTTTAAG
26793466 ATACAATAAAGT
1 ATACAATAAAGT
26793478 ATACAATAAAGT
1 ATACAATAAAGT
26793490 A
1 A
26793491 AAGTGACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATACAATAAAGT
Found at i:26793602 original size:19 final size:20
Alignment explanation
Indices: 26793564--26793602 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
26793554 ATCGTGTTAA
*
26793564 TTATATTTATTATTCGAATT
1 TTATATTTATTATTAGAATT
*
26793584 TTAT-TTTATTATTATAATT
1 TTATATTTATTATTAGAATT
26793603 CACCGTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (20 bp):
TTATATTTATTATTAGAATT
Found at i:26795980 original size:7 final size:7
Alignment explanation
Indices: 26795968--26796005 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
26795958 ATAAAATTAA
26795968 GAGTTTG
1 GAGTTTG
26795975 GAGTTTG
1 GAGTTTG
26795982 GAGTTTG
1 GAGTTTG
*
26795989 GAGTTTA
1 GAGTTTG
26795996 GAGTTTG
1 GAGTTTG
26796003 GAG
1 GAG
26796006 AAGTTTTAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.39
Consensus pattern (7 bp):
GAGTTTG
Found at i:26798597 original size:6 final size:6
Alignment explanation
Indices: 26798583--26798612 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26798573 AAATTGGAGT
*
26798583 GCAGAA GCAGGA GCAGGA GCAGGA GCAGGA
1 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA
26798613 ACGGCCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.47, T:0.00
Consensus pattern (6 bp):
GCAGGA
Found at i:26802752 original size:2 final size:2
Alignment explanation
Indices: 26802745--26802769 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26802735 ACAATTTTAT
26802745 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26802770 TATTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26803350 original size:17 final size:15
Alignment explanation
Indices: 26803318--26803354 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 15
26803308 TCATGAAAAA
26803318 TAAAAATATTATAAT
1 TAAAAATATTATAAT
26803333 TAAATAATATTAATAAT
1 TAAA-AATATT-ATAAT
26803350 TAAAA
1 TAAAA
26803355 TGTAATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAAAATATTATAAT
Found at i:26803901 original size:95 final size:95
Alignment explanation
Indices: 26803793--26804034 Score: 366
Period size: 95 Copynumber: 2.6 Consensus size: 95
26803783 AAGGGCTCAT
26803793 CACTTCCCAAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAATTAAAATTT
1 CACTTCCCAAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAATTAAAATTT
* * **
26803858 TTTTGGTGGTGTCATATTAAATGGCGTCAC
66 TTTTGATGATGTCATATTAAATGGCACCAC
*
26803888 CACTTCCCTAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAATTAAAATTT
1 CACTTCCCAAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAATTAAAATTT
26803953 TTTTGATGATGTCATATTAAATGGCACCAC
66 TTTTGATGATGTCATATTAAATGGCACCAC
* * * **
26803983 CACTTCCCCAAATTAGTT---TCTTT-TTTAAATGATTTATTATTTATTTTTTAAA
1 CACTTCCCAAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAA
26804035 AAGATTTAAA
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
91 27 0.20
92 4 0.03
95 106 0.77
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.50
Consensus pattern (95 bp):
CACTTCCCAAAATTTGTTAAGCCTTTCTTTTCATGATTTATTATTTATTTTTTAAATTAAAATTT
TTTTGATGATGTCATATTAAATGGCACCAC
Found at i:26804040 original size:24 final size:24
Alignment explanation
Indices: 26803994--26804042 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
26803984 ACTTCCCCAA
* *
26803994 ATTAGTTTCTTTTTTAAATGATTT
1 ATTAGTTTATTTTTTAAAAGATTT
26804018 ATTA-TTTATTTTTTAAAAAGATTT
1 ATTAGTTTATTTTTT-AAAAGATTT
26804042 A
1 A
26804043 AATTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (24 bp):
ATTAGTTTATTTTTTAAAAGATTT
Found at i:26804047 original size:23 final size:22
Alignment explanation
Indices: 26804003--26804052 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
26803993 AATTAGTTTC
* *
26804003 TTTTTTAAATGATTTATTATTT
1 TTTTTTAAAAGATTTATAATTT
26804025 ATTTTTTAAAAAGATTTA-AATTT
1 -TTTTTT-AAAAGATTTATAATTT
26804048 TTTTT
1 TTTTT
26804053 GGTGGTGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 10 0.42
24 9 0.38
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTTTTAAAAGATTTATAATTT
Found at i:26804103 original size:11 final size:11
Alignment explanation
Indices: 26804082--26804115 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26804072 AATATATCCC
26804082 TTTATTTATTTA
1 TTTA-TTATTTA
26804094 TTTATTATTTA
1 TTTATTATTTA
*
26804105 CTTATTATTTA
1 TTTATTATTTA
26804116 ATTTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:26818338 original size:18 final size:18
Alignment explanation
Indices: 26818318--26818352 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26818308 AGTTTTTGTT
26818318 TTTTCA-AATATTTTTAA
1 TTTTCATAATATTTTTAA
*
26818335 TTTTCATAATTTTTTTAA
1 TTTTCATAATATTTTTAA
26818353 GCTCATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTCATAATATTTTTAA
Found at i:26826769 original size:60 final size:58
Alignment explanation
Indices: 26826656--26827161 Score: 363
Period size: 61 Copynumber: 8.6 Consensus size: 58
26826646 TTTGTCAGAT
*
26826656 AAAAAA-TATTTTTTTTGGTGTAGGCCATTGCATGACCGACACC-TCCTTTTTTATCTAGA
1 AAAAAATTATTTTTTTT-GTGTTGGCCATTGCATGACCGACACCAT-C-TTTTTATCTAGA
*
26826715 AAAAAATTAATTTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCTGGTA
1 AAAAAATT-A-TTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCTAG-A
* * * * *
26826776 AAAAATTATTATTTTTTTGGTGTTGGTCATTGCATGGCCGACACTC-CCTTTTTGTC-AGA
1 AAAAA--ATTATTTTTTTTGTGTTGGCCATTGCATGACCGACAC-CATCTTTTTATCTAGA
* * * ** *
26826835 TAAAAAA-TATTTTTTTGGTGTTGGCCATTACTTGGTCGACACCA-CATTTTTTATCTGGA
1 -AAAAAATTATTTTTTTTGTGTTGGCCATTGCATGACCGACACCATC--TTTTTATCTAGA
* * * * *
26826894 AAAAAATCA-ATTTTTTGTGTTGACCATTGCATGACCGATACCCTCTTTTGTA---AGA
1 AAAAAATTATTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTT-TATCTAGA
* * * * *
26826949 TAAAAAA-TATTTTTTTTTGGTGTTGACCATTGCATGGCCGACACCCTCTATTTATCTGATA
1 -AAAAAATTA-TTTTTTTT-GTGTTGGCCATTGCATGACCGACACCATCTTTTTATCT-AGA
* * * * * * *
26827010 AAAAAATTAAATTTTTTAGTGTTGGCCATTGCAT-AGTCAACACTACCTTTTTATCTGATA
1 AAAAAATT-ATTTTTTTTGTGTTGGCCATTGCATGA-CCGACACCATCTTTTTATCT-AGA
* ** * * ** * *
26827070 AAAAAATCAAATTTTTGGTGTTGGTCATTGCATGGTCGACACCACCTTTTTATCTAATA
1 AAAAAATTATTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCT-AGA
*
26827129 AAAAAATTCATTTTTTTTGTGTTGGTCA-TGCAT
1 AAAAAATT-ATTTTTTTTGTGTTGGCCATTGCAT
26827162 TGGCTGACAC
Statistics
Matches: 365, Mismatches: 53, Indels: 58
0.77 0.11 0.12
Matches are distributed among these distances:
55 3 0.01
56 8 0.02
57 43 0.12
58 71 0.19
59 66 0.18
60 79 0.22
61 80 0.22
62 12 0.03
63 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (58 bp):
AAAAAATTATTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCTAGA
Found at i:26827075 original size:176 final size:176
Alignment explanation
Indices: 26826650--26827205 Score: 481
Period size: 179 Copynumber: 3.1 Consensus size: 176
26826640 CACTTTTTTG
* * * * * * * *
26826650 TCAGATAAAAAATATTTTTTTTGGTGTAGGCCATTGCAT-GACCGACACCTC-CTTTTTTATCTA
1 TCAGATAAAAAATA-ATTTTTTAGTGTTGGCCATTACATAG-TCAACACCACAC-TTTTTATCTG
* * * *
26826713 GAAAAAAATTAATTTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCTGGTAAA
63 GAAAAAAATCAA--ATTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTA-CAGATAAA
** * *
26826778 AAATTATTATTTTTTTGGTGTTGGTCATTGCATGGCCGACACTCCCTTTTTG
125 AAATTATTATTTTTTTGGTGTTGACCATTGCATGGCCGACACTCCCTATTTA
* * * * * *
26826830 TCAGATAAAAAATATTTTTTTGGTGTTGGCCATTACTTGGTCGACACCACATTTTTTATCTGGAA
1 TCAGATAAAAAATAATTTTTTAGTGTTGGCCATTACATAGTCAACACCACACTTTTTATCTGGAA
* * *
26826895 AAAAATC-AATTTTTTGTGTTGACCATTGCATGACCGATACCCTCTTTTGTA-AGATAAAAAA-T
66 AAAAATCAAATTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTT-TACAGATAAAAAATT
26826957 ATT-TTTTTTTGGTGTTGACCATTGCATGGCCGACAC-CCTCTATTTA
130 ATTATTTTTTTGGTGTTGACCATTGCATGGCCGACACTCC-CTATTTA
* * *
26827003 TCTGATAAAAAAATTAAATTTTTTAGTGTTGGCCATTGCATAGTCAACACTAC-CTTTTTATCTG
1 TCAGAT-AAAAAA-T-AATTTTTTAGTGTTGGCCATTACATAGTCAACACCACACTTTTTATCTG
* * * ** *
26827067 ATAAAAAAATCAAATTTTTGGTGTTGGTCATTGCATGGTCGACACCACCTTTTTATCTA-ATAAA
63 -GAAAAAAATCAAATTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTA-C-AGATAAA
* ** * *
26827131 AAA--ATTCATTTTTTTTGTGTTGGTCA-TGCATTGGCTGACACT-ACTATTGGTCA
125 AAATTATT-ATTTTTTTGGTGTTGACCATTGCA-TGGCCGACACTCCCTATT--T-A
*
26827184 TCAAATAAAAAATAAATTTTTT
1 TCAGATAAAAAAT-AATTTTTT
26827206 TTTGCTATTA
Statistics
Matches: 314, Mismatches: 43, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
172 2 0.01
173 41 0.13
174 10 0.03
175 19 0.06
176 77 0.25
177 38 0.12
178 18 0.06
179 82 0.26
180 22 0.07
181 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (176 bp):
TCAGATAAAAAATAATTTTTTAGTGTTGGCCATTACATAGTCAACACCACACTTTTTATCTGGAA
AAAAATCAAATTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTACAGATAAAAAATTA
TTATTTTTTTGGTGTTGACCATTGCATGGCCGACACTCCCTATTTA
Found at i:26827171 original size:60 final size:60
Alignment explanation
Indices: 26826656--26827279 Score: 414
Period size: 60 Copynumber: 10.4 Consensus size: 60
26826646 TTTGTCAGAT
* * * *
26826656 AAAAAA-T-ATTTTTTTTGGTGTAGGCCATTGCATGACCGACACCTCCTTTTTTATCT-AGA
1 AAAAAATTAATTTTTTTT-GTGTTGGCCATTGCATGGCCGACACCACC-TTTTTATCTAATA
* * **
26826715 AAAAAATTAATTTTTTTTTGTGTTGGCCATTGCATGACCGACACCATCTTTTTATCTGGT-
1 AAAAAATTAA-TTTTTTTTGTGTTGGCCATTGCATGGCCGACACCACCTTTTTATCTAATA
* * *
26826775 AAAAAATTATTATTTTTTTGGTGTTGGTCATTGCATGGCCGACACTC-CCTTTTTGTC-AGAT-
1 AAAAAATTA--ATTTTTTTTGTGTTGGCCATTGCATGGCCGACAC-CACCTTTTTATCTA-ATA
* * * * * **
26826836 AAAAAA-T-ATTTTTTTGGTGTTGGCCATTACTTGGTCGACACCACATTTTTTATCT-GGA
1 AAAAAATTAATTTTTTTTGTGTTGGCCATTGCATGGCCGACACCAC-CTTTTTATCTAATA
* * * * * * *
26826894 AAAAAATCAA--TTTTTTGTGTTGACCATTGCATGACCGATA-C-CCTCTTT-TGTAAGA
1 AAAAAATTAATTTTTTTTGTGTTGGCCATTGCATGGCCGACACCACCTTTTTATCTAATA
* * * *
26826949 TAAAAAA-TATTTTTTTTTGGTGTTGACCATTGCATGGCCGACACC-CTCTATTTATCTGATA
1 -AAAAAATTAATTTTTTTT-GTGTTGGCCATTGCATGGCCGACACCAC-CTTTTTATCTAATA
* * * * * * *
26827010 AAAAAATTAAATTTTTTAGTGTTGGCCATTGCATAGTCAACACTACCTTTTTATCTGATA
1 AAAAAATTAATTTTTTTTGTGTTGGCCATTGCATGGCCGACACCACCTTTTTATCTAATA
* * * * *
26827070 AAAAAATCAA-ATTTTTGGTGTTGGTCATTGCATGGTCGACACCACCTTTTTATCTAATA
1 AAAAAATTAATTTTTTTTGTGTTGGCCATTGCATGGCCGACACCACCTTTTTATCTAATA
* * * * * *
26827129 AAAAAATTCATTTTTTTTGTGTTGGTCA-TGCATTGGCTGACACTA-CTATTGGTCATCAAAT-
1 AAAAAATTAATTTTTTTTGTGTTGGCCATTGCA-TGGCCGACACCACCT-TT--TTATCTAATA
* * * * *
26827190 AAAAAATAAATTTTTTTTTGCTATTAGCCA-TGCATTGGCCGACACCA-CTATTGGTTGTCAAAT
1 AAAAAATTAA-TTTTTTTTG-TGTTGGCCATTGCA-TGGCCGACACCACCT-TT--TTATCTAAT
26827253 A
60 A
26827254 AAAAAA-TAATTTTTTTTGATGTTGGC
1 AAAAAATTAATTTTTTTTG-TGTTGGC
26827280 TATCATTGAC
Statistics
Matches: 454, Mismatches: 79, Indels: 61
0.76 0.13 0.10
Matches are distributed among these distances:
54 2 0.00
55 7 0.02
56 8 0.02
57 38 0.08
58 58 0.13
59 64 0.14
60 101 0.22
61 93 0.20
62 40 0.09
63 37 0.08
64 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (60 bp):
AAAAAATTAATTTTTTTTGTGTTGGCCATTGCATGGCCGACACCACCTTTTTATCTAATA
Found at i:26827194 original size:119 final size:119
Alignment explanation
Indices: 26826962--26827204 Score: 262
Period size: 119 Copynumber: 2.0 Consensus size: 119
26826952 AAAATATTTT
*
26826962 TTTTTGGTGTTGACCATTGCATGGCCGACACCCTCTATTTATCTGATAAAAAAATTAAATTTTTT
1 TTTTTGGTGTTGACCATTGCATGGCCGACACCCTCTATTTATCTAATAAAAAAATTAAATTTTTT
* * * *
26827027 AGTGTTGGCCATTGCATAGTCAACACTACCTTTTTATCTGAT-AAAAAAATCAAA
66 AGTGTTGGCCATTGCATAGGCAACACTACCTATTGATCTCATAAAAAAAAT-AAA
** * * * *
26827081 TTTTTGGTGTTGGTCATTGCATGGTCGACACCAC-CTTTTTATCTAATAAAAAAATTCATTTTTT
1 TTTTTGGTGTTGACCATTGCATGGCCGACACC-CTCTATTTATCTAATAAAAAAATTAAATTTTT
* * * * *
26827145 TTGTGTTGGTCA-TGCATTGGCTGACACTA-CTATTGGTCATCA-AATAAAAAATAAA
65 TAGTGTTGGCCATTGCATAGGC-AACACTACCTATTGATC-TCATAA-AAAAAATAAA
26827200 TTTTT
1 TTTTT
26827205 TTTTGCTATT
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
118 13 0.13
119 82 0.80
120 8 0.08
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (119 bp):
TTTTTGGTGTTGACCATTGCATGGCCGACACCCTCTATTTATCTAATAAAAAAATTAAATTTTTT
AGTGTTGGCCATTGCATAGGCAACACTACCTATTGATCTCATAAAAAAAATAAA
Found at i:26827205 original size:61 final size:61
Alignment explanation
Indices: 26827129--26827297 Score: 182
Period size: 63 Copynumber: 2.7 Consensus size: 61
26827119 TTATCTAATA
** *
26827129 AAAAAATTCATTTTTTTTG-TGTTGGTCATGCATTGGCTGACACTACTATTGGTCATCAAAT
1 AAAAAATAAATTTTTTTTGATGTTGG-CATGCATTGGCTGACACCACTATTGGTCATCAAAT
* * * * **
26827190 AAAAAATAAATTTTTTTTTGCTATTAGCCATGCATTGGCCGACACCACTATTGGTTGTCAAAT
1 AAAAAATAAA-TTTTTTTTGATGTT-GGCATGCATTGGCTGACACCACTATTGGTCATCAAAT
*
26827253 AAAAAA-ATAATTTTTTTTGATGTTGGCTAT-CATTGACTGACACCA
1 AAAAAATA-AATTTTTTTTGATGTTGGC-ATGCATTGGCTGACACCA
26827298 ACTTTCCCTC
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
61 23 0.26
62 24 0.27
63 42 0.47
64 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (61 bp):
AAAAAATAAATTTTTTTTGATGTTGGCATGCATTGGCTGACACCACTATTGGTCATCAAAT
Found at i:26831117 original size:17 final size:16
Alignment explanation
Indices: 26831095--26831129 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26831085 ACTTGTGTAA
*
26831095 AAATTAATTTGAAAATT
1 AAATTAAGTTG-AAATT
26831112 AAATTAAGTTGAAATT
1 AAATTAAGTTGAAATT
26831128 AA
1 AA
26831130 TTTGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (16 bp):
AAATTAAGTTGAAATT
Found at i:26831348 original size:93 final size:92
Alignment explanation
Indices: 26831246--26831579 Score: 506
Period size: 93 Copynumber: 3.6 Consensus size: 92
26831236 ATTTAAAATT
* * *
26831246 ATTTTAAATTTATTTAAGTAAAAAACTATTATTATATTACAAGTTTTATCAAATAATGTGTTGAT
1 ATTTTAAATTTATTTAAATAAAAAACTATTATTATATTACAATTTTTATCAAATAATATGTTGAT
*
26831311 TTGATAATACATTATTTACCAATTTTAA
66 TTGACAATACATTATTTACCAATTTT-A
* *
26831339 ATTTTAAATTTATTTGAATAAAAAACTATTATTATATTACAATTTTTATTAAATAATATGTTGAT
1 ATTTTAAATTTATTTAAATAAAAAACTATTATTATATTACAATTTTTATCAAATAATATGTTGAT
*
26831404 TTGACAATATATTATTTACCAAATTTTA
66 TTGACAATACATTATTTACC-AATTTTA
* * *
26831432 ATATTTAAATTTATTTAAATCAAAAACTATTATTATATTACAATTTTTATCAAATAATTTATTGA
1 AT-TTTAAATTTATTTAAATAAAAAACTATTATTATATTACAATTTTTATCAAATAATATGTTGA
*
26831497 TTTGACAATACATTATTTATCAATTTTTA
65 TTTGACAATACATTATTTACCAA-TTTTA
* * *
26831526 TTTTTAAATTTATTTAAATCAAAATCTATTATTATATTACAATTTTTATCAAAT
1 ATTTTAAATTTATTTAAATAAAAAACTATTATTATATTACAATTTTTATCAAAT
26831580 TTTAAATTTA
Statistics
Matches: 222, Mismatches: 16, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
93 134 0.60
94 88 0.40
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.49
Consensus pattern (92 bp):
ATTTTAAATTTATTTAAATAAAAAACTATTATTATATTACAATTTTTATCAAATAATATGTTGAT
TTGACAATACATTATTTACCAATTTTA
Found at i:26831577 original size:30 final size:30
Alignment explanation
Indices: 26831450--26831578 Score: 75
Period size: 28 Copynumber: 4.2 Consensus size: 30
26831440 ATTTATTTAA
*
26831450 ATCAAAAACTATTATTATATTACAATTTTT
1 ATCAAAATCTATTATTATATTACAATTTTT
* * *
26831480 ATCAAATAATTTATTGATTTGACAATAC-ATTATTT
1 ATC-AA-AATCTATT-A-TT-ATATTACAATT-TTT
** * * * * **
26831515 ATCAATTTTTATTTTTAAATT--TATTTAA
1 ATCAAAATCTATTATTATATTACAATTTTT
26831543 ATCAAAATCTATTATTATATTACAATTTTT
1 ATCAAAATCTATTATTATATTACAATTTTT
26831573 ATCAAA
1 ATCAAA
26831579 TTTTAAATTT
Statistics
Matches: 71, Mismatches: 19, Indels: 18
0.66 0.18 0.17
Matches are distributed among these distances:
28 17 0.24
29 3 0.04
30 16 0.23
31 4 0.06
32 6 0.08
33 7 0.10
34 7 0.10
35 11 0.15
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.49
Consensus pattern (30 bp):
ATCAAAATCTATTATTATATTACAATTTTT
Found at i:26831660 original size:151 final size:151
Alignment explanation
Indices: 26831498--26831796 Score: 535
Period size: 151 Copynumber: 2.0 Consensus size: 151
26831488 ATTTATTGAT
* * * * *
26831498 TTGACAATACATTATTTATCAATTTTTATTTTTAAATTTATTTAAATCAAAATCTATTATTATAT
1 TTGACAATACATTATTTACCAATTTTAAATTTTAAATTTATTTAAATAAAAAACTATTATTATAT
26831563 TACAATTTTTATCAAATTTTAAATTTATTAACCAAAATAACCTTAATTGACATTAAAATTACAAA
66 TACAATTTTTATCAAATTTTAAATTTATTAACCAAAATAACCTTAATTGACATTAAAATTACAAA
26831628 AATACCATCAATGGTCCCCTA
131 AATACCATCAATGGTCCCCTA
26831649 TTGACAATACATTATTTACCAATTTTAAATTTTAAATTTATTTAAATAAAAAACTATTATTATAT
1 TTGACAATACATTATTTACCAATTTTAAATTTTAAATTTATTTAAATAAAAAACTATTATTATAT
*
26831714 TACAATTTTTATCAAATTTTAAATTTATTAACCAAAATAGCCTTAATTGACATTAAAATTACAAA
66 TACAATTTTTATCAAATTTTAAATTTATTAACCAAAATAACCTTAATTGACATTAAAATTACAAA
*
26831779 AATGCCATCAATGGTCCC
131 AATACCATCAATGGTCCC
26831797 ATACTATAAA
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
151 141 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.41
Consensus pattern (151 bp):
TTGACAATACATTATTTACCAATTTTAAATTTTAAATTTATTTAAATAAAAAACTATTATTATAT
TACAATTTTTATCAAATTTTAAATTTATTAACCAAAATAACCTTAATTGACATTAAAATTACAAA
AATACCATCAATGGTCCCCTA
Found at i:26831870 original size:22 final size:22
Alignment explanation
Indices: 26831816--26831873 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
26831806 ATAGCATTGT
* *
26831816 ACCACCCAAATTCTAGCTCACT
1 ACCACCCAAATTCCAGCTCACC
*** *
26831838 TGAACCGAAATTCCAGCTCACC
1 ACCACCCAAATTCCAGCTCACC
26831860 ACCACCCAAATTCC
1 ACCACCCAAATTCC
26831874 GTCGTTGATC
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.41, G:0.07, T:0.19
Consensus pattern (22 bp):
ACCACCCAAATTCCAGCTCACC
Found at i:26831931 original size:10 final size:10
Alignment explanation
Indices: 26831872--26831940 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
26831862 CACCCAAATT
26831872 CCGTCGTTGA
1 CCGTCGTTGA
* *
26831882 TCGCCGTTGA
1 CCGTCGTTGA
26831892 CCG-CTGTTGA
1 CCGTC-GTTGA
* * *
26831902 TCATTGTTGA
1 CCGTCGTTGA
* *
26831912 CCGACTTTGA
1 CCGTCGTTGA
*
26831922 CTGTCGTTGA
1 CCGTCGTTGA
26831932 CCGTCGTTG
1 CCGTCGTTG
26831941 CTCGACTTCG
Statistics
Matches: 42, Mismatches: 15, Indels: 4
0.69 0.25 0.07
Matches are distributed among these distances:
9 1 0.02
10 41 0.98
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.35
Consensus pattern (10 bp):
CCGTCGTTGA
Found at i:26832872 original size:15 final size:16
Alignment explanation
Indices: 26832843--26832878 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
26832833 TTTTTTAAAA
*
26832843 TTTTATTAATTATTAT
1 TTTTATTAATAATTAT
26832859 TTTTATT-ATAATTAT
1 TTTTATTAATAATTAT
26832874 TTTTA
1 TTTTA
26832879 ATTTTTCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTATTAATAATTAT
Found at i:26833075 original size:13 final size:13
Alignment explanation
Indices: 26833057--26833081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26833047 TAAAAATTTG
26833057 ATATTTTTTACAA
1 ATATTTTTTACAA
26833070 ATATTTTTTACA
1 ATATTTTTTACA
26833082 TTTTCGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTTTTTACAA
Found at i:26833170 original size:120 final size:122
Alignment explanation
Indices: 26833022--26833287 Score: 412
Period size: 120 Copynumber: 2.2 Consensus size: 122
26833012 TCGAAATGTC
* *
26833022 TTTTATATTTTTG-AATTTTTAAAAATAAAAATTTGATATTTTTTACAAATATTTTTTACATTTT
1 TTTTATATTTTTGAAATTTTTTAAAATAAAAATGTGATATTTTTTACAAATATTTTTTACATTTT
* * * * *
26833086 CGAAATATAAAAAATACA-TTTCTAAATA-TTTTTTACAAATAAAAAATCTAATATT
66 CAAAAGATAAAAAATACATTTTCGAAATATTTTTTTACAAATAAAAAATATAATACT
26833141 TTTTATATTTTTGAAATTTTTTAAAATAAAAATGTGATATTTTTTACAAATATTTTTTACATTTT
1 TTTTATATTTTTGAAATTTTTTAAAATAAAAATGTGATATTTTTTACAAATATTTTTTACATTTT
*
26833206 CAAAAGATAAAAAATACATTTTCGAAATATTTTTTTACAAATAAAAAATATGATACT
66 CAAAAGATAAAAAATACATTTTCGAAATATTTTTTTACAAATAAAAAATATAATACT
* *
26833263 TTTTACATTTTTCGAATTTTTTTAA
1 TTTTATATTTTT-GAAATTTTTTAA
26833288 CTAAACTCGT
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
119 13 0.10
120 65 0.49
121 9 0.07
122 35 0.26
123 11 0.08
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (122 bp):
TTTTATATTTTTGAAATTTTTTAAAATAAAAATGTGATATTTTTTACAAATATTTTTTACATTTT
CAAAAGATAAAAAATACATTTTCGAAATATTTTTTTACAAATAAAAAATATAATACT
Found at i:26833195 original size:13 final size:13
Alignment explanation
Indices: 26833177--26833201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26833167 TAAAAATGTG
26833177 ATATTTTTTACAA
1 ATATTTTTTACAA
26833190 ATATTTTTTACA
1 ATATTTTTTACA
26833202 TTTTCAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTTTTTACAA
Found at i:26833859 original size:24 final size:24
Alignment explanation
Indices: 26833832--26833885 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
26833822 CAATGACGAG
* *
26833832 CCCGATTACGAGCTC-GAGGACCAA
1 CCCGATTACCAGC-CGGAGCACCAA
*
26833856 CCCGAGTACCAGCCGGAGCACCAA
1 CCCGATTACCAGCCGGAGCACCAA
26833880 CCCGAT
1 CCCGAT
26833886 CCCCAATATC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.28, C:0.39, G:0.24, T:0.09
Consensus pattern (24 bp):
CCCGATTACCAGCCGGAGCACCAA
Found at i:26834372 original size:30 final size:30
Alignment explanation
Indices: 26834313--26834430 Score: 148
Period size: 30 Copynumber: 4.0 Consensus size: 30
26834303 GATTTTTTTC
*
26834313 CGTTTAT-TTTTTAATTTAATTTGTAATTT
1 CGTTTATATTTTAAATTTAATTTGTAATTT
* * *
26834342 CGTTTATATTTTAAATTTACTTTCTTATTT
1 CGTTTATATTTTAAATTTAATTTGTAATTT
* * *
26834372 CCTATATATTTTAATTTTAATTTGTAATTT
1 CGTTTATATTTTAAATTTAATTTGTAATTT
* *
26834402 CGTTTATATTTTAAATTTCATTTCTAATT
1 CGTTTATATTTTAAATTTAATTTGTAATT
26834431 ATTATTTTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
29 7 0.10
30 66 0.90
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.62
Consensus pattern (30 bp):
CGTTTATATTTTAAATTTAATTTGTAATTT
Found at i:26835404 original size:60 final size:61
Alignment explanation
Indices: 26835327--26835484 Score: 191
Period size: 60 Copynumber: 2.6 Consensus size: 61
26835317 ACCAATAGTG
* * *
26835327 GTGTCGGCCAATA-AATGGCCAACA-TAAAAAAATTTGATTTTTTTATCTGAC-AAAAAGAAA
1 GTGTCGGTC-ATACAATGGCCAACACTAAAAAAATTTGATTTATTTATCGGACAAAAAAG-AA
* **
26835387 GTGTCGGTCATACAATGGCCAACACTAAAAAAA-TTGATTTATTTATCGGATAAAAAAGTG
1 GTGTCGGTCATACAATGGCCAACACTAAAAAAATTTGATTTATTTATCGGACAAAAAAGAA
* *
26835447 GTGTCGGTCATGCAATGGCCAACACT-GAAAAATTTGAT
1 GTGTCGGTCATACAATGGCCAACACTAAAAAAATTTGAT
26835485 CATGGTCGAC
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
59 8 0.09
60 64 0.74
61 14 0.16
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (61 bp):
GTGTCGGTCATACAATGGCCAACACTAAAAAAATTTGATTTATTTATCGGACAAAAAAGAA
Found at i:26835627 original size:60 final size:57
Alignment explanation
Indices: 26835534--26835744 Score: 201
Period size: 60 Copynumber: 3.6 Consensus size: 57
26835524 AAAGGGCATG
26835534 GCCAACACCAAAAAATTTAATTTTTTTATCAGATAAAAAGGTGGTGTCGGCCATGCAATT
1 GCCAACACCAAAAAA-TT-ATTTTTTTATCAGATAAAAAGG-GGTGTCGGCCATGCAATT
* * *
26835594 GCCAACACCAAAAAATTGGATTTTTTTATCAGATAAATGAGGGGTGTCAGTCATGCAA-T
1 GCCAACACCAAAAAATT--ATTTTTTTATCAGATAAA-AAGGGGTGTCGGCCATGCAATT
* * * * * *
26835653 GACCAACACAAAAAAAACTA-TTTTTTATCTGACAAAAAGGGAATGTCGGCCATGCAATG
1 G-CCAACAC-CAAAAAATTATTTTTTTATCAGATAAAAAGGG-GTGTCGGCCATGCAATT
* * * *
26835712 GTCAACACTAAAAAAATTAATTTTTTACCAGAT
1 GCCAACAC-CAAAAAATTATTTTTTTATCAGAT
26835745 CATGGCTGAC
Statistics
Matches: 125, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
57 4 0.03
58 41 0.33
59 16 0.13
60 54 0.43
61 10 0.08
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (57 bp):
GCCAACACCAAAAAATTATTTTTTTATCAGATAAAAAGGGGTGTCGGCCATGCAATT
Found at i:26848785 original size:32 final size:32
Alignment explanation
Indices: 26848748--26848815 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
26848738 ATTTTTATAC
*
26848748 TTTAATCTTTGATATAATTTGATCTTTATATT
1 TTTAATCTTTGATATAATTTGATCCTTATATT
26848780 TTTAATCTTTGATATAATTTGATCCTTATATT
1 TTTAATCTTTGATATAATTTGATCCTTATATT
26848812 TTTA
1 TTTA
26848816 TAATATTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.07, G:0.06, T:0.59
Consensus pattern (32 bp):
TTTAATCTTTGATATAATTTGATCCTTATATT
Found at i:26848794 original size:16 final size:17
Alignment explanation
Indices: 26848743--26848799 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 17
26848733 ATTTAATTTT
*
26848743 TATACTTTAATCTTTGA
1 TATAATTTAATCTTTGA
*
26848760 TATAATTTGATCTTT-A
1 TATAATTTAATCTTTGA
*
26848776 TAT-TTTTAATCTTTGA
1 TATAATTTAATCTTTGA
26848792 TATAATTT
1 TATAATTT
26848800 GATCCTTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 9 0.27
16 8 0.24
17 16 0.48
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (17 bp):
TATAATTTAATCTTTGA
Found at i:26848810 original size:16 final size:16
Alignment explanation
Indices: 26848752--26848810 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
26848742 TTATACTTTA
26848752 ATCTTTGATATAATTTG
1 ATCTTT-ATATAATTTG
* *
26848769 ATCTTTATAT-TTTTA
1 ATCTTTATATAATTTG
26848784 ATCTTTGATATAATTTG
1 ATCTTT-ATATAATTTG
*
26848801 ATCCTTATAT
1 ATCTTTATAT
26848811 TTTTATAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 9 0.26
16 12 0.34
17 14 0.40
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.56
Consensus pattern (16 bp):
ATCTTTATATAATTTG
Found at i:26860444 original size:43 final size:41
Alignment explanation
Indices: 26860251--26860457 Score: 279
Period size: 41 Copynumber: 5.0 Consensus size: 41
26860241 ACTCAAAAGA
26860251 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
* * *
26860292 AAAAGGAATACTCATGTCTCGGGTTAAGAATGAGATTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
* * * *
26860333 AAAAGGAAGACTTATGTCTCAGGATGAGAATGGGATCATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
*
26860374 AAAAGGAAGACTCATGTCTCGGGATGAGCATGAGATTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
* * ** *
26860415 ATAAATGGAATATTCATGTCTCGAAATGAGCATGAGATTATGT
1 A-AAA-GGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
26860458 TTTAAGGGAG
Statistics
Matches: 145, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
41 109 0.75
42 3 0.02
43 33 0.23
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (41 bp):
AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
Found at i:26863511 original size:41 final size:41
Alignment explanation
Indices: 26863454--26863660 Score: 288
Period size: 41 Copynumber: 5.0 Consensus size: 41
26863444 ACTCAAAAGA
*
26863454 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGGTTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
*
26863495 AAAAGTAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
*
26863536 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGAATATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
* * *
26863577 AAAAGGAAGACTCATGTCTCGGGACGAGCATGAGATTACATAT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATT--ATGT
* * ** * *
26863620 AAATGGAAGATTCATGTCTCGAAATAAGTATGAGATTATGT
1 AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
26863661 TTTAAGGAAG
Statistics
Matches: 148, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 115 0.78
43 33 0.22
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.25
Consensus pattern (41 bp):
AAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATGT
Found at i:26865208 original size:20 final size:18
Alignment explanation
Indices: 26865183--26865222 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
26865173 TTTTTTTTAT
*
26865183 AAATTTGTAAAACATTATTA
1 AAATTTATAAAA-A-TATTA
26865203 AAATTTATAAAAATATTA
1 AAATTTATAAAAATATTA
26865221 AA
1 AA
26865223 TAAAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 1 0.05
20 11 0.58
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (18 bp):
AAATTTATAAAAATATTA
Found at i:26865220 original size:21 final size:21
Alignment explanation
Indices: 26865183--26865229 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26865173 TTTTTTTTAT
* *
26865183 AAATTTGTAAAACATT-ATTA
1 AAATTTATAAAACATTAAATA
*
26865203 AAATTTATAAAAATATTAAATA
1 AAATTTAT-AAAACATTAAATA
26865225 AAATT
1 AAATT
26865230 CAAAAACTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 7 0.32
21 7 0.32
22 8 0.36
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
AAATTTATAAAACATTAAATA
Found at i:26868044 original size:31 final size:30
Alignment explanation
Indices: 26867995--26868052 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
26867985 ACTTCGATTC
* *
26867995 TATATAAAATTTATAAAAAATAAAAATTTA
1 TATATAAAATTCAAAAAAAATAAAAATTTA
*
26868025 TATATATAAATTCAAAAAAAATTAAAAT
1 TATATA-AAATTCAAAAAAAATAAAAAT
26868053 CGTGAATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 6 0.25
31 18 0.75
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (30 bp):
TATATAAAATTCAAAAAAAATAAAAATTTA
Found at i:26868655 original size:22 final size:22
Alignment explanation
Indices: 26868628--26868671 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26868618 TTAAGGAAAG
26868628 TACAAGTAGGGGTATTCAATAA
1 TACAAGTAGGGGTATTCAATAA
26868650 TACAAGTAGGGGTATTCAATAA
1 TACAAGTAGGGGTATTCAATAA
26868672 CTGAACCGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (22 bp):
TACAAGTAGGGGTATTCAATAA
Found at i:26871622 original size:144 final size:144
Alignment explanation
Indices: 26871382--26873594 Score: 1938
Period size: 144 Copynumber: 15.4 Consensus size: 144
26871372 TATACATCTC
* * * * * * * *
26871382 CTCCACCACCTCCAATGCACTCTCCACCTCCATCATATGTCTACAAGTCTCCTCCACCACCTGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * * * * * * *
26871447 CATTCACCACCTTCACCTTACAT-TCATAAGTCACCACCGCCTCCGGTCCATTCTCCACCTCCGC
66 CACTCTCCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
* * *
26871511 CTTACATATATAAGT
130 CATATATCTATAAGT
* * ** * * * * * * *
26871526 CCCCTCCACCACTTGTCCATTCACCACCTCCACCCTACATCTATAAGTCCCCACCACCACAAATC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * *
26871591 CACTCTCCACCTCCACCATATGTCTACAAGTCTCCACCACCACCAG-CCTACTCCCCACCTCCTC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCC-ATTCCCCACCTCCAC
* *
26871655 CATATGTCTACAAGT
130 CATATATCTATAAGT
* * * * * ** * * *
26871670 CTCCACCACCATCAGTCCATTCACCACCCCCTCCTTACGTTTACAAGTCTCCACCACCTCCAGTT
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * ** * *
26871735 CACTCCCCACCTCCACCATATGTTTACAAGTCTCCACCACCACCAGTCCATTCATCACCCCCTCC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
* *
26871800 TTATAT-TCACAAGT
131 ATATATCT-ATAAGT
* * * * * * * * * *
26871814 CACCACCACCTCCATTCCATTCACCACCTCCTCCTTACATATATAAGTCCCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * *
26871879 CACTCTCCTCCTCCTCCATATGTCTATAAGTCTCCACCACCACCTGTCCACTCCCCACCTCCACC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
26871944 ATATATCTATAAGT
131 ATATATCTATAAGT
* * *
26871958 CTCCACCACCACCAGTCCACTCTCCACCTCCGCCATATATCTACAAGTCTCCACCACCACCAATC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * *
26872023 CACTCCCCA-CTACCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCACCACCACCTC
66 CACTCTCCACCT-CCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
* * *
26872087 CTTACATATATAAGT
130 CATATATCTATAAGT
* * * * * * *
26872102 CCCCACCACCACCAGT-CACTCTCCTCCTCCTCCATATGTCTATAAGTCTCCACCGCCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * *
26872166 CACTCCCCACCTCCACCATATATTTACAAGTCTCCACCACCACCAGTCCACTCCCCACCTCCACC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
26872231 ATATATCTATAAGT
131 ATATATCTATAAGT
* * *
26872245 CTCCACCACCACCAGTCCACTCTCCACCACCACCATATGTCTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * * * * *
26872310 CATTCGCCACCCCCCCCTTACAT-TCACAAGTCTCCACCACCTCCAATTCACTCCCCACCTCCAC
66 CACTCTCCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
* * *
26872374 CATATGTTTACAAGT
130 CATATATCTATAAGT
* * * * *
26872389 CTCCACCACCACCAGTTCACTCCCCACCTCTACCATATGTTTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * * * *
26872454 CA-TTTACCACCCCCTCCTTACAT-TCACAAGTCACCA-C-CCTCCAGTTCACTCCCCACCTCCA
66 CACTCT-CCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCA
* * *
26872515 CCATATGTTTACAAGT
129 CCATATATCTATAAGT
* * * * * * *
26872531 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGTCACCACCACCTCCAGT
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGT
** * * * * * * * * * **
26872595 TAATTCTCCACCCCCTCCTTACATATATAAGTCCCCTCCACCACCTA-TCCATTCATCACCTCCA
65 CCACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACC-AGTCCATTCCCCACCTCCA
* *
26872659 CCCTACATCTATAAGT
129 CCATATATCTATAAGT
* ** * * *
26872675 CCCCACCACCACCAGTCCACTTTCCTCCTCCA-C--ATGTCTACAAGTCTCCACCACCACCGGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * *
26872737 TACTCCCCACCTCCACCATATATCTACAAGTCCCCACCACCACCAATCTATTCACCACC-CCTCC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
* ** *
26872801 TTACGTTTATAAGT
131 ATATATCTATAAGT
* * * * * * * *
26872815 CTCCACCACCTCCAATTCATTCCCCGCCTCCGCCATATGTCTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * * * * * *
26872880 CATTCACCACCCCCTCCTTACAT-TCACAAGTCACCACCACCTCCATTCCATTCACCACCTCCTC
66 CACTCTCCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
*
26872944 CTTACTAT-TATAAGT
130 CATA-TATCTATAAGT
* * * * * *
26872959 CCCCACCACCACCAGTCCACTCACCTCCTCCTCCATATATTTATAAGTCTCCACCACCACCAGTT
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* *
26873024 CACT-TCCCACCTCCACCATATATCTATAAGTCTCCACCACCACCAATCCATTCCCCACCTCCAC
66 CACTCT-CCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
26873088 CATATATCTATAAGT
130 CATATATCTATAAGT
* *
26873103 CTCCACCACCACCAGTCCACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAATC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * *
26873168 CACTCCCCACCACCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCACCACCCCCTCC
66 CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
* * * *
26873233 TTACATTTACAAGT
131 ATATATCTATAAGT
** * * * * *
26873247 CTCCACCACCTTCAGTTCACTCCCCACCTCCACCATATGTTTACAAATCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * * * * * * * *
26873312 CATTCACCACCCCCTCCTTACAT-TCACAAGTCACCACCACCTCCAATCAATTCTCCACCTCCTC
66 CACTCTCCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCAC
* * *
26873376 CTTACATATATAAGT
130 CATATATCTATAAGT
* * * * * * *
26873391 CCCCTCCACCACCTA-TCCATTCACCACC-CTC-CC-TACATCTATAAGTCCCCATCACCACCAG
1 CTCCACCACCACC-AGTCCACTCACCACCTC-CACCATATATCTACAAGTCTCCACCACCACCAG
* * *
26873452 TCCACTCTCCTCCTCCTCCATATATCTACAAGTCTCCACCACCACCAGTCCACTCCCCACCTCCA
64 TCCACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCA
*
26873517 CCATATATCTATAATT
129 CCATATATCTATAAGT
* * *
26873533 CCCCACCACCACCGGTCCACTC-CCTACCTCCACCATATATCTACAAGTCTCCTCCACCACCA
1 CTCCACCACCACCAGTCCACTCACC-ACCTCCACCATATATCTACAAGTCTCCACCACCACCA
26873595 TCACATCCCG
Statistics
Matches: 1694, Mismatches: 338, Indels: 74
0.80 0.16 0.04
Matches are distributed among these distances:
140 39 0.02
141 70 0.04
142 223 0.13
143 223 0.13
144 1131 0.67
145 8 0.00
ACGTcount: A:0.25, C:0.47, G:0.05, T:0.23
Consensus pattern (144 bp):
CTCCACCACCACCAGTCCACTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
CACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTCCATTCCCCACCTCCACC
ATATATCTATAAGT
Found at i:26871624 original size:27 final size:27
Alignment explanation
Indices: 26871594--26871676 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
26871584 ACAAATCCAC
26871594 TCTCCACCTCCACCATATGTCTACAAG
1 TCTCCACCTCCACCATATGTCTACAAG
* *
26871621 TCTCCACCACCACC--A-GCCTAC---
1 TCTCCACCTCCACCATATGTCTACAAG
* *
26871642 TCCCCACCTCCTCCATATGTCTACAAG
1 TCTCCACCTCCACCATATGTCTACAAG
26871669 TCTCCACC
1 TCTCCACC
26871677 ACCATCAGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
21 11 0.26
23 1 0.02
24 10 0.23
25 1 0.02
27 20 0.47
ACGTcount: A:0.23, C:0.48, G:0.06, T:0.23
Consensus pattern (27 bp):
TCTCCACCTCCACCATATGTCTACAAG
Found at i:26871630 original size:24 final size:24
Alignment explanation
Indices: 26871603--26871681 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 24
26871593 CTCTCCACCT
26871603 CCACCATATGTCTACAAGTCTCCA
1 CCACCATATGTCTACAAGTCTCCA
* * **** * *
26871627 CCACCACCA-GCCTACTCCCCACCT
1 CCACCA-TATGTCTACAAGTCTCCA
*
26871651 CCTCCATATGTCTACAAGTCTCCA
1 CCACCATATGTCTACAAGTCTCCA
26871675 CCACCAT
1 CCACCAT
26871682 CAGTCCATTC
Statistics
Matches: 35, Mismatches: 18, Indels: 4
0.61 0.32 0.07
Matches are distributed among these distances:
23 1 0.03
24 33 0.94
25 1 0.03
ACGTcount: A:0.25, C:0.47, G:0.06, T:0.22
Consensus pattern (24 bp):
CCACCATATGTCTACAAGTCTCCA
Found at i:26871963 original size:27 final size:26
Alignment explanation
Indices: 26871933--26872067 Score: 83
Period size: 27 Copynumber: 5.5 Consensus size: 26
26871923 TGTCCACTCC
*
26871933 CCACCTCCACCATATATCTATAAGTCT
1 CCACCACCACCATATATCTA-AAGTCT
* * *
26871960 CCACCACCACC--A-GTC--CACTCT
1 CCACCACCACCATATATCTAAAGTCT
* *
26871981 CCACCTCCGCCATATATCTACAAGTCT
1 CCACCACCACCATATATCTA-AAGTCT
* * *
26872008 CCACCACCACC--A-ATC--CACTCC
1 CCACCACCACCATATATCTAAAGTCT
*
26872029 CCACTACCACCATATATCTACAAGTCT
1 CCACCACCACCATATATCTA-AAGTCT
26872056 CCACCACCACCA
1 CCACCACCACCA
26872068 GTCCATTCAC
Statistics
Matches: 77, Mismatches: 19, Indels: 24
0.64 0.16 0.20
Matches are distributed among these distances:
21 26 0.34
23 2 0.03
24 10 0.13
25 2 0.03
27 37 0.48
ACGTcount: A:0.29, C:0.47, G:0.04, T:0.20
Consensus pattern (26 bp):
CCACCACCACCATATATCTAAAGTCT
Found at i:26872061 original size:24 final size:24
Alignment explanation
Indices: 26871990--26872064 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 24
26871980 TCCACCTCCG
26871990 CCATATATCTACAAGTCTCCACCA
1 CCATATATCTACAAGTCTCCACCA
* * **** * *
26872014 CCACCA-ATCCACTCCCCACTACCA
1 CCA-TATATCTACAAGTCTCCACCA
26872038 CCATATATCTACAAGTCTCCACCA
1 CCATATATCTACAAGTCTCCACCA
26872062 CCA
1 CCA
26872065 CCAGTCCATT
Statistics
Matches: 33, Mismatches: 16, Indels: 4
0.62 0.30 0.08
Matches are distributed among these distances:
23 1 0.03
24 31 0.94
25 1 0.03
ACGTcount: A:0.32, C:0.45, G:0.03, T:0.20
Consensus pattern (24 bp):
CCATATATCTACAAGTCTCCACCA
Found at i:26872268 original size:21 final size:21
Alignment explanation
Indices: 26872244--26872320 Score: 73
Period size: 21 Copynumber: 3.4 Consensus size: 21
26872234 TATCTATAAG
26872244 TCTCCACCACCACCAGTCCAC
1 TCTCCACCACCACCAGTCCAC
*
26872265 TCTCCACCACCACCATATGTCTACAAG
1 TCTCCACCACCACC--A-GTC--C-AC
*
26872292 TCTCCACCACCACCAGTCCAT
1 TCTCCACCACCACCAGTCCAC
*
26872313 TCGCCACC
1 TCTCCACC
26872321 CCCCCCTTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
21 22 0.47
22 1 0.02
23 1 0.02
24 6 0.13
25 1 0.02
26 1 0.02
27 15 0.32
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (21 bp):
TCTCCACCACCACCAGTCCAC
Found at i:26872397 original size:24 final size:24
Alignment explanation
Indices: 26872370--26872447 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
26872360 CTCCCCACCT
26872370 CCACCATATGTTTACAAGTCTCCA
1 CCACCATATGTTTACAAGTCTCCA
* * *
26872394 CCACCACCA-G-TT-C-ACTCCCCA
1 CCACCA-TATGTTTACAAGTCTCCA
26872415 CCTCTACCATATGTTTACAAGTCTCCA
1 -C-C-ACCATATGTTTACAAGTCTCCA
26872442 CCACCA
1 CCACCA
26872448 CCAGTCCATT
Statistics
Matches: 40, Mismatches: 6, Indels: 16
0.65 0.10 0.26
Matches are distributed among these distances:
21 6 0.15
22 2 0.05
23 4 0.10
24 16 0.40
25 4 0.10
26 2 0.05
27 6 0.15
ACGTcount: A:0.27, C:0.42, G:0.06, T:0.24
Consensus pattern (24 bp):
CCACCATATGTTTACAAGTCTCCA
Found at i:26872785 original size:24 final size:24
Alignment explanation
Indices: 26872711--26872786 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
26872701 CCTCCACATG
* **
26872711 TCTACAAGTCTCCACCACCACCGG
1 TCTACAAGTCCCCACCACCACCAA
*
26872735 TCTAC---TCCCCACCTCCACCATATA
1 TCTACAAGTCCCCACCACCACC--A-A
26872759 TCTACAAGTCCCCACCACCACCAA
1 TCTACAAGTCCCCACCACCACCAA
26872783 TCTA
1 TCTA
26872787 TTCACCACCC
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
21 12 0.29
24 15 0.37
25 1 0.02
27 13 0.32
ACGTcount: A:0.28, C:0.47, G:0.05, T:0.20
Consensus pattern (24 bp):
TCTACAAGTCCCCACCACCACCAA
Found at i:26873060 original size:27 final size:27
Alignment explanation
Indices: 26872991--26873212 Score: 125
Period size: 27 Copynumber: 9.1 Consensus size: 27
26872981 ACCTCCTCCT
*
26872991 CCATATATTTATAAGTCTCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
* *
26873018 CCA-GT-TC-ACT---TC-CCACCTCCA
1 CCATATATCTA-TAAGTCTCCACCACCA
26873039 CCATATATCTATAAGTCTCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
* * *
26873066 CC--A-ATCCAT---TCCCCACCTCCA
1 CCATATATCTATAAGTCTCCACCACCA
26873087 CCATATATCTATAAGTCTCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
* * * *
26873114 CC--A-GTC---CACTCTCCACCTCCA
1 CCATATATCTATAAGTCTCCACCACCA
*
26873135 CCATATATCTACAAGTCTCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
* * *
26873162 CC--A-ATC---CACTCCCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
*
26873183 CCATATATCTACAAGTCTCCACCACCA
1 CCATATATCTATAAGTCTCCACCACCA
26873210 CCA
1 CCA
26873213 GTCCATTCAC
Statistics
Matches: 144, Mismatches: 25, Indels: 52
0.65 0.11 0.24
Matches are distributed among these distances:
21 51 0.35
22 3 0.02
23 6 0.04
24 22 0.15
25 5 0.03
26 3 0.02
27 54 0.38
ACGTcount: A:0.29, C:0.45, G:0.03, T:0.22
Consensus pattern (27 bp):
CCATATATCTATAAGTCTCCACCACCA
Found at i:26873063 original size:24 final size:24
Alignment explanation
Indices: 26873036--26873113 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
26873026 CTTCCCACCT
26873036 CCACCATATATCTATAAGTCTCCA
1 CCACCATATATCTATAAGTCTCCA
* * **** * *
26873060 CCACCACCA-ATCCATTCCCCACCT
1 CCACCA-TATATCTATAAGTCTCCA
26873084 CCACCATATATCTATAAGTCTCCA
1 CCACCATATATCTATAAGTCTCCA
26873108 CCACCA
1 CCACCA
26873114 CCAGTCCACT
Statistics
Matches: 36, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
23 1 0.03
24 34 0.94
25 1 0.03
ACGTcount: A:0.31, C:0.44, G:0.03, T:0.23
Consensus pattern (24 bp):
CCACCATATATCTATAAGTCTCCA
Found at i:26873126 original size:21 final size:21
Alignment explanation
Indices: 26873102--26873185 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 21
26873092 TATCTATAAG
*
26873102 TCTCCACCACCACCAGTCCAC
1 TCTCCACCACCACCAATCCAC
* *
26873123 TCTCCACCTCCACCATATATCTACAAG
1 TCTCCACCACCACC--A-ATC--C-AC
26873150 TCTCCACCACCACCAATCCAC
1 TCTCCACCACCACCAATCCAC
*
26873171 TCCCCACCACCACCA
1 TCTCCACCACCACCA
26873186 TATATCTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 28 0.55
22 1 0.02
23 1 0.02
24 5 0.10
25 1 0.02
26 1 0.02
27 14 0.27
ACGTcount: A:0.27, C:0.54, G:0.02, T:0.17
Consensus pattern (21 bp):
TCTCCACCACCACCAATCCAC
Found at i:26873159 original size:24 final size:24
Alignment explanation
Indices: 26873132--26873209 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
26873122 CTCTCCACCT
26873132 CCACCATATATCTACAAGTCTCCA
1 CCACCATATATCTACAAGTCTCCA
* * **** *
26873156 CCACCACCA-ATCCACTCCCCACCA
1 CCACCA-TATATCTACAAGTCTCCA
26873180 CCACCATATATCTACAAGTCTCCA
1 CCACCATATATCTACAAGTCTCCA
26873204 CCACCA
1 CCACCA
26873210 CCAGTCCATT
Statistics
Matches: 38, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.32, C:0.47, G:0.03, T:0.18
Consensus pattern (24 bp):
CCACCATATATCTACAAGTCTCCA
Found at i:26873610 original size:24 final size:24
Alignment explanation
Indices: 26873598--26873689 Score: 136
Period size: 24 Copynumber: 4.0 Consensus size: 24
26873588 ACCACCATCA
*
26873598 CATCCCGAACCTCATCCTCATCCT
1 CATCCCGAACCTCATCCCCATCCT
*
26873622 CATCCCGAACCTCAT-CCC--CCG
1 CATCCCGAACCTCATCCCCATCCT
26873643 CATCCCGAACCTCATCCCCATCCT
1 CATCCCGAACCTCATCCCCATCCT
*
26873667 CATCCCGAACCTCATCCTCATCC
1 CATCCCGAACCTCATCCCCATCC
26873690 CCCACATCCG
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
21 17 0.28
22 3 0.05
23 2 0.03
24 39 0.64
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (24 bp):
CATCCCGAACCTCATCCCCATCCT
Found at i:26873610 original size:48 final size:47
Alignment explanation
Indices: 26871382--26873594 Score: 1707
Period size: 48 Copynumber: 46.3 Consensus size: 47
26871372 TATACATCTC
* * * * * *
26871382 CTCCACCACCTCCAATGCACTCTCCACCTCCATCATATGTCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * * *
26871430 CTCCTCCACCACCTGTCCATTCACCACCTTCACCTTACAT-TCATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * * * * * * * *
26871478 CACCACCGCCTCCGGTCCATTCTCCACCTCCGCCTTACATATATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * ** * * *
26871526 CCCCTCCACCACTTGTCCATTCACCACCTCCACCCTACATCTATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * *
26871574 CCCCACCACCACAAATCCACTCTCCACCTCCACCATATGTCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * *
26871622 CTCCACCACCACCAG-CCTACTCCCCACCTCCTCCATATGTCTACAAGT
1 CTCCACCACCACCAGTCC-A-TTCCCACCTCCACCATATATCTACAAGT
* * * * ** *
26871670 CTCCACCACCATCAGTCCATTCACCACCCCCTCCTTACGTTTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * *
26871718 CTCCACCACCTCCAGTTCACTCCCCACCTCCACCATATGTTTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * *
26871766 CTCCACCACCACCAGTCCATTCATCACCCCCTCCTTATAT-TCACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * * * * * * *
26871814 CACCACCACCTCCATTCCATTCACCACCTCCTCCTTACATATATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * * *
26871862 CCCCACCACCACCAGTCCACTCTCCTCCTCCTCCATATGTCTATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * *
26871910 CTCCACCACCACCTGTCCACTCCCCACCTCCACCATATATCTATAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* *
26871958 CTCCACCACCACCAGTCCACTCTCCACCTCCGCCATATATCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* *
26872006 CTCCACCACCACCAATCCACTCCC-CACTACCACCATATATCTACAAGT
1 CTCCACCACCACCAGTCCATTCCCAC-CT-CCACCATATATCTACAAGT
* * * * * *
26872054 CTCCACCACCACCAGTCCATTCACCACCACCTCCTTACATATATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * * *
26872102 CCCCACCACCACCAGT-CACTCTCCTCCTCCTCCATATGTCTATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * *
26872149 CTCCACCGCCACCAGTCCACTCCCCACCTCCACCATATATTTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* *
26872197 CTCCACCACCACCAGTCCACTCCCCACCTCCACCATATATCTATAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * *
26872245 CTCCACCACCACCAGTCCACTCTCCACCACCACCATATGTCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * *
26872293 CTCCACCACCACCAGTCCATTCGCCACCCCCCCCTTACAT-TCACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * * * * *
26872341 CTCCACCACCTCCAATTCACTCCCCACCTCCACCATATGTTTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * * *
26872389 CTCCACCACCACCAGTTCACTCCCCACCTCTACCATATGTTTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * * *
26872437 CTCCACCACCACCAGTCCATTTACCACCCCCTCCTTACAT-TCACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCT-ACAAGT
* * * * * *
26872485 CACCA-C-CCTCCAGTTCACTCCCCACCTCCACCATATGTTTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * *
26872531 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * ** * * * * * *
26872579 CACCACCACCTCCAGTTAATTCTCCACCCCCTCCTTACATATATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * * *
26872627 CCCCTCCACCACCTA-TCCATTCATCACCTCCACCCTACATCTATAAGT
1 CTCCACCACCACC-AGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * *
26872675 CCCCACCACCACCAGTCCACTTTCCTCCTCCA-C--ATGTCTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * *
26872720 CTCCACCACCACCGGTCTACTCCCCACCTCCACCATATATCTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * * * ** * *
26872768 CCCCACCACCACCAATCTATTCACCACC-CCTCCTTACGTTTATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * * * *
26872815 CTCCACCACCTCCAATTCATTCCCCGCCTCCGCCATATGTCTACAAGT
1 CTCCACCACCACCAGTCCATT-CCCACCTCCACCATATATCTACAAGT
* * * *
26872863 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * * * * *
26872911 CACCACCACCTCCATTCCATTCACCACCTCCTCCTTACTAT-TATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATA-TATCTACAAGT
* * * * * *
26872959 CCCCACCACCACCAGTCCACTCACCTCCTCCTCCATATATTTATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* *
26873007 CTCCACCACCACCAGTTCACTTCCCACCTCCACCATATATCTATAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* *
26873055 CTCCACCACCACCAATCCATTCCCCACCTCCACCATATATCTATAAGT
1 CTCCACCACCACCAGTCCATT-CCCACCTCCACCATATATCTACAAGT
*
26873103 CTCCACCACCACCAGTCCACTCTCCACCTCCACCATATATCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * *
26873151 CTCCACCACCACCAATCCACTCCCCACCACCACCATATATCTACAAGT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * * *
26873199 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACATTTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
** * * * * *
26873247 CTCCACCACCTTCAGTTCACTCCCCACCTCCACCATATGTTTACAAAT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * * *
26873295 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCT-ACAAGT
* * * * * * * * *
26873343 CACCACCACCTCCAATCAATTCTCCACCTCCTCCTTACATATATAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * * *
26873391 CCCCTCCACCACCTA-TCCATTCACCACC-CTC-CC-TACATCTATAAGT
1 CTCCACCACCACC-AGTCCATTC-CCACCTC-CACCATATATCTACAAGT
* * * * *
26873437 CCCCATCACCACCAGTCCACTCTCCTCCTCCTCCATATATCTACAAGT
1 CTCCACCACCACCAGTCCATTC-CCACCTCCACCATATATCTACAAGT
* * *
26873485 CTCCACCACCACCAGTCCACTCCCCACCTCCACCATATATCTATAATT
1 CTCCACCACCACCAGTCCA-TTCCCACCTCCACCATATATCTACAAGT
* * *
26873533 CCCCACCACCACCGGTCCACTCCCTACCTCCACCATATATCTACAAGT
1 CTCCACCACCACCAGTCCATTCCC-ACCTCCACCATATATCTACAAGT
*
26873581 CTCCTCCACCACCA
1 CTCCACCACCACCA
26873595 TCACATCCCG
Statistics
Matches: 1772, Mismatches: 334, Indels: 118
0.80 0.15 0.05
Matches are distributed among these distances:
45 36 0.02
46 68 0.04
47 119 0.07
48 1518 0.86
49 30 0.02
50 1 0.00
ACGTcount: A:0.25, C:0.47, G:0.05, T:0.23
Consensus pattern (47 bp):
CTCCACCACCACCAGTCCATTCCCACCTCCACCATATATCTACAAGT
Found at i:26873610 original size:96 final size:96
Alignment explanation
Indices: 26871382--26873594 Score: 1916
Period size: 96 Copynumber: 23.1 Consensus size: 96
26871372 TATACATCTC
* * * * * * * * *
26871382 CTCCACCACCTCCAATGCACTCTCCACCTCCATCATATGTCTACAAGTCTCCTCCACCACCTGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * *
26871447 CATTCACCACCTTCACCTTACAT-TCATAAGT
66 CACTCCCCACCTCCACCATATATCT-ACAAGT
* * * * * * * * * * * * **
26871478 CACCACCGCCTCCGGTCCATTCTCCACCTCCGCCTTACATATATAAGTCCCCTCCACCACTTGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * *
26871543 CATTCACCACCTCCACCCTACATCTATAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * *
26871574 CCCCACCACCACAAATCCACTCTCCACCTCCACCATATGTCTACAAGTCTCCACCACCACCAG-C
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* *
26871638 CTACTCCCCACCTCCTCCATATGTCTACAAGT
66 C-ACTCCCCACCTCCACCATATATCTACAAGT
* * * * ** * * *
26871670 CTCCACCACCATCAGTCCATTCACCACCCCCTCCTTACGTTTACAAGTCTCCACCACCTCCAGTT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* *
26871735 CACTCCCCACCTCCACCATATGTTTACAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * *
26871766 CTCCACCACCACCAGTCCATTCATCACCCCCTCCTTATAT-TCACAAGTCACCACCACCTCCATT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGT
* * * * * * *
26871830 CCATTCACCACCTCCTCCTTACATATATAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * * *
26871862 CCCCACCACCACCAGTCCACTCTCCTCCTCCTCCATATGTCTATAAGTCTCCACCACCACCTGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
*
26871927 CACTCCCCACCTCCACCATATATCTATAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * *
26871958 CTCCACCACCACCAGTCCACTCTCCACCTCCGCCATATATCTACAAGTCTCCACCACCACCAATC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
26872023 CACTCCCCA-CTACCACCATATATCTACAAGT
66 CACTCCCCACCT-CCACCATATATCTACAAGT
* * * * * * *
26872054 CTCCACCACCACCAGTCCATTCACCACCACCTCCTTACATATATAAGTCCCCACCACCACCAGT-
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * *
26872118 CACTCTCCTCCTCCTCCATATGTCTATAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * *
26872149 CTCCACCGCCACCAGTCCACTCCCCACCTCCACCATATATTTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
*
26872214 CACTCCCCACCTCCACCATATATCTATAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * *
26872245 CTCCACCACCACCAGTCCACTCTCCACCACCACCATATGTCTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * *
26872310 CATTCGCCACCCCCCCCTTACAT-TCACAAGT
66 CACTCCCCACCTCCACCATATATCT-ACAAGT
* * * * * * * *
26872341 CTCCACCACCTCCAATTCACTCCCCACCTCCACCATATGTTTACAAGTCTCCACCACCACCAGTT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * *
26872406 CACTCCCCACCTCTACCATATGTTTACAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * *
26872437 CTCCACCACCACCAGTCCATTTACCACCCCCTCCTTACAT-TCACAAGTCACCA-C-CCTCCAGT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGT
* * *
26872499 TCACTCCCCACCTCCACCATATGTTTACAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * *
26872531 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGTCACCACCACCTCCAGT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGT
** * * * * * * * *
26872595 TAATTCTCCACCCCCTCCTTACATATATAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * *
26872627 CCCCTCCACCACCTA-TCCATTCATCACCTCCACCCTACATCTATAAGTCCCCACCACCACCAGT
1 CTCCACCACCACC-AGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGT
** * *
26872691 CCACTTTCCTCCTCCA-C--ATGTCTACAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * *
26872720 CTCCACCACCACCGGTCTACTCCCCACCTCCACCATATATCTACAAGTCCCCACCACCACCAATC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * ** * *
26872785 TATTCACCACC-CCTCCTTACGTTTATAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * *
26872815 CTCCACCACCTCCAATTCATTCCCCGCCTCCGCCATATGTCTACAAGTCTCCACCACCACCAGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * * * * *
26872880 CATTCACCACCCCCTCCTTACAT-TCACAAGT
66 CACTCCCCACCTCCACCATATATCT-ACAAGT
* * * * * * *
26872911 CACCACCACCTCCATTCCATTCACCACCTCCTCCTTACTAT-TATAAGTCCCCACCACCACCAGT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATA-TATCTACAAGTCTCCACCACCACCAGT
* * * * *
26872975 CCACTCACCTCCTCCTCCATATATTTATAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * *
26873007 CTCCACCACCACCAGTTCACTTC-CCACCTCCACCATATATCTATAAGTCTCCACCACCACCAAT
1 CTCCACCACCACCAGTCCA-TTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGT
* *
26873071 CCATTCCCCACCTCCACCATATATCTATAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * *
26873103 CTCCACCACCACCAGTCCACTCTCCACCTCCACCATATATCTACAAGTCTCCACCACCACCAATC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
*
26873168 CACTCCCCACCACCACCATATATCTACAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * ** *
26873199 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACATTTACAAGTCTCCACCACCTTCAGTT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
* * *
26873264 CACTCCCCACCTCCACCATATGTTTACAAAT
66 CACTCCCCACCTCCACCATATATCTACAAGT
* * * * * * *
26873295 CTCCACCACCACCAGTCCATTCACCACCCCCTCCTTACAT-TCACAAGTCACCACCACCTCCAAT
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCT-ACAAGTCTCCACCACCACCAGT
* * * * * * * *
26873359 CAATTCTCCACCTCCTCCTTACATATATAAGT
65 CCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * *
26873391 CCCCTCCACCACCTA-TCCATTCACCACC-CTC-CC-TACATCTATAAGTCCCCATCACCACCAG
1 CTCCACCACCACC-AGTCCATTCACCACCTC-CACCATATATCTACAAGTCTCCACCACCACCAG
* * *
26873452 TCCACTCTCCTCCTCCTCCATATATCTACAAGT
64 TCCACTCCCCACCTCCACCATATATCTACAAGT
* * * * * *
26873485 CTCCACCACCACCAGTCCACTCCCCACCTCCACCATATATCTATAATTCCCCACCACCACCGGTC
1 CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
*
26873550 CACTCCCTACCTCCACCATATATCTACAAGT
66 CACTCCCCACCTCCACCATATATCTACAAGT
*
26873581 CTCCTCCACCACCA
1 CTCCACCACCACCA
26873595 TCACATCCCG
Statistics
Matches: 1759, Mismatches: 324, Indels: 68
0.82 0.15 0.03
Matches are distributed among these distances:
92 2 0.00
93 69 0.04
94 160 0.09
95 174 0.10
96 1341 0.76
97 13 0.01
ACGTcount: A:0.25, C:0.47, G:0.05, T:0.23
Consensus pattern (96 bp):
CTCCACCACCACCAGTCCATTCACCACCTCCACCATATATCTACAAGTCTCCACCACCACCAGTC
CACTCCCCACCTCCACCATATATCTACAAGT
Found at i:26873618 original size:6 final size:6
Alignment explanation
Indices: 26873607--26873689 Score: 52
Period size: 6 Copynumber: 14.3 Consensus size: 6
26873597 ACATCCCGAA
* * *
26873607 CCTCAT CCTCAT CCTCAT CC-CGAA CCTCAT CC-C-- CCGCAT CC-CGAA
1 CCTCAT CCTCAT CCTCAT CCTC-AT CCTCAT CCTCAT CCTCAT CCTC-AT
* *
26873652 CCTCAT CCCCAT CCTCAT CC-CGAA CCTCAT CCTCAT CC
1 CCTCAT CCTCAT CCTCAT CCTC-AT CCTCAT CCTCAT CC
26873690 CCCACATCCG
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
3 2 0.03
4 1 0.02
5 4 0.07
6 50 0.83
7 3 0.05
ACGTcount: A:0.19, C:0.54, G:0.05, T:0.22
Consensus pattern (6 bp):
CCTCAT
Found at i:26873622 original size:12 final size:11
Alignment explanation
Indices: 26873598--26873683 Score: 77
Period size: 12 Copynumber: 7.5 Consensus size: 11
26873588 ACCACCATCA
26873598 CATCCCGAACCT
1 CATCCC-AACCT
*
26873610 CATCCTCATCCT
1 CATCC-CAACCT
26873622 CATCCCGAACCT
1 CATCCC-AACCT
*
26873634 CATCCC--CCG
1 CATCCCAACCT
26873643 CATCCCGAACCT
1 CATCCC-AACCT
*
26873655 CATCCCCATCCT
1 CAT-CCCAACCT
26873667 CATCCCGAACCT
1 CATCCC-AACCT
26873679 CATCC
1 CATCC
26873684 TCATCCCCCA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
9 8 0.13
11 4 0.07
12 45 0.74
13 4 0.07
ACGTcount: A:0.21, C:0.53, G:0.06, T:0.20
Consensus pattern (11 bp):
CATCCCAACCT
Found at i:26873649 original size:45 final size:45
Alignment explanation
Indices: 26873598--26873683 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
26873588 ACCACCATCA
*
26873598 CATCCCGAACCTCATCCTCATCCTCATCCCGAACCTCATCCCCCG
1 CATCCCGAACCTCATCCCCATCCTCATCCCGAACCTCATCCCCCG
26873643 CATCCCGAACCTCATCCCCATCCTCATCCCGAACCTCATCC
1 CATCCCGAACCTCATCCCCATCCTCATCCCGAACCTCATCC
26873684 TCATCCCCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.21, C:0.53, G:0.06, T:0.20
Consensus pattern (45 bp):
CATCCCGAACCTCATCCCCATCCTCATCCCGAACCTCATCCCCCG
Found at i:26877374 original size:27 final size:26
Alignment explanation
Indices: 26877343--26877431 Score: 71
Period size: 27 Copynumber: 3.5 Consensus size: 26
26877333 TCCAAAGCAT
26877343 TCTCCACCCCCTCCATATCACTACAAA
1 TCTCCACCCCCTCCATA-CACTACAAA
* * *
26877370 TCTCCACCTCCTCC---CGC--GAAA
1 TCTCCACCCCCTCCATACACTACAAA
* *
26877391 TCTCCACCCCCACCATACCACTACAAG
1 TCTCCACCCCCTCCATA-CACTACAAA
*
26877418 TCTCCACCTCCTCC
1 TCTCCACCCCCTCC
26877432 TGTGAAATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 12
0.68 0.15 0.18
Matches are distributed among these distances:
21 15 0.33
23 2 0.04
25 2 0.04
27 27 0.59
ACGTcount: A:0.24, C:0.53, G:0.03, T:0.20
Consensus pattern (26 bp):
TCTCCACCCCCTCCATACACTACAAA
Found at i:26877398 original size:48 final size:48
Alignment explanation
Indices: 26877343--26877809 Score: 600
Period size: 48 Copynumber: 9.7 Consensus size: 48
26877333 TCCAAAGCAT
* * *
26877343 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCCGCGAAA
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* * * * *
26877391 TCTCCACCCCCACCATACCACTACAAGTCTCCACCTCCTCCTGTGAAA
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* * * *
26877439 TATCCACCCCCACCCTATCATTACAAATCTCCACCTCCTCCAGTGAAG
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* *
26877487 TCTCCACCCCCGT-CGTACCACTACAAATCTCCACCTCCTCCAGTGAAG
1 TCTCCACCCCC-TCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
*
26877535 TCTCCACCCCCTCCGTATCACTACAAATCTCCACCTCCTCCAGTGAAG
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* * * * *
26877583 TCTCCACCCCCACCCTATCATTACAAATCCCCACCTCCTCCTGTGAAG
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
*
26877631 TCTCCACCCCCGT-CATACCACTACAAATCTCCACCTCCTCCAGTGAAG
1 TCTCCACCCCC-TCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* * * * *
26877679 TCTCCACCCCCACCGTATCATTACAAGTCTCCACCTCCTCCTA-TGAAA
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCC-AGTGAAG
* *
26877727 TCTCCACCCCCAT-CATATCACTACAAATCTCCACCCCCTCCAGTGAAA
1 TCTCCACCCCC-TCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
* *
26877775 TCTCCACCCCCGCCATATCACTACAAGTCTCCACC
1 TCTCCACCCCCTCCATATCACTACAAATCTCCACC
26877810 ACCACCACAA
Statistics
Matches: 369, Mismatches: 42, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
47 2 0.01
48 366 0.99
49 1 0.00
ACGTcount: A:0.25, C:0.47, G:0.07, T:0.22
Consensus pattern (48 bp):
TCTCCACCCCCTCCATATCACTACAAATCTCCACCTCCTCCAGTGAAG
Found at i:26877539 original size:144 final size:144
Alignment explanation
Indices: 26877343--26877809 Score: 702
Period size: 144 Copynumber: 3.2 Consensus size: 144
26877333 TCCAAAGCAT
* * * * *
26877343 TCTCCACCCCC-TCCATATCACTACAAATCTCCACCTCCTCCCGCGAAATCTCCACCCCCACCAT
1 TCTCCACCCCCGT-CATACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCGT
* *
26877407 ACCACTACAAGTCTCCACCTCCTCCTGTGAAATATCCACCCCCACCCTATCATTACAAATCTCCA
65 ATCACTACAAGTCTCCACCTCCTCCTGTGAAATCTCCACCCCCACCCTATCATTACAAATCTCCA
26877472 CCTCCTCCAGTGAAG
130 CCTCCTCCAGTGAAG
* *
26877487 TCTCCACCCCCGTCGTACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCTCCGTA
1 TCTCCACCCCCGTCATACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCGTA
* * * *
26877552 TCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCCTATCATTACAAATCCCCAC
66 TCACTACAAGTCTCCACCTCCTCCTGTGAAATCTCCACCCCCACCCTATCATTACAAATCTCCAC
*
26877617 CTCCTCCTGTGAAG
131 CTCCTCCAGTGAAG
26877631 TCTCCACCCCCGTCATACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCGTA
1 TCTCCACCCCCGTCATACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCGTA
* * * * *
26877696 TCATTACAAGTCTCCACCTCCTCCTATGAAATCTCCACCCCCATCATATCACTACAAATCTCCAC
66 TCACTACAAGTCTCCACCTCCTCCTGTGAAATCTCCACCCCCACCCTATCATTACAAATCTCCAC
* *
26877761 CCCCTCCAGTGAAA
131 CTCCTCCAGTGAAG
* * *
26877775 TCTCCACCCCCGCCATATCACTACAAGTCTCCACC
1 TCTCCACCCCCGTCATACCACTACAAATCTCCACC
26877810 ACCACCACAA
Statistics
Matches: 291, Mismatches: 31, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
144 290 1.00
145 1 0.00
ACGTcount: A:0.25, C:0.47, G:0.07, T:0.22
Consensus pattern (144 bp):
TCTCCACCCCCGTCATACCACTACAAATCTCCACCTCCTCCAGTGAAGTCTCCACCCCCACCGTA
TCACTACAAGTCTCCACCTCCTCCTGTGAAATCTCCACCCCCACCCTATCATTACAAATCTCCAC
CTCCTCCAGTGAAG
Found at i:26877590 original size:21 final size:21
Alignment explanation
Indices: 26877466--26877548 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 21
26877456 TCATTACAAA
26877466 TCTCCACCTCCTCCAGTGAAG
1 TCTCCACCTCCTCCAGTGAAG
* * * *
26877487 TCTCCACCCCCGTCGTACCACTACAAA
1 TCTCCA---CC-TCCT-CCAGT-GAAG
26877514 TCTCCACCTCCTCCAGTGAAG
1 TCTCCACCTCCTCCAGTGAAG
*
26877535 TCTCCACCCCCTCC
1 TCTCCACCTCCTCC
26877549 GTATCACTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
21 21 0.45
22 4 0.09
23 3 0.06
24 4 0.09
25 3 0.06
26 4 0.09
27 8 0.17
ACGTcount: A:0.19, C:0.49, G:0.10, T:0.22
Consensus pattern (21 bp):
TCTCCACCTCCTCCAGTGAAG
Found at i:26877762 original size:27 final size:26
Alignment explanation
Indices: 26877724--26877809 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
26877714 TCCTCCTATG
26877724 AAATCTCCACCCCCATCATATCACTAC
1 AAATCTCCACCCCC-TCATATCACTAC
* *
26877751 AAATCTCCACCCCCTC----CAGT-G
1 AAATCTCCACCCCCTCATATCACTAC
*
26877772 AAATCTCCACCCCCGCCATATCACTAC
1 AAATCTCCACCCCC-TCATATCACTAC
*
26877799 AAGTCTCCACC
1 AAATCTCCACC
26877810 ACCACCACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
21 14 0.30
22 4 0.09
26 5 0.11
27 24 0.51
ACGTcount: A:0.29, C:0.47, G:0.05, T:0.20
Consensus pattern (26 bp):
AAATCTCCACCCCCTCATATCACTAC
Found at i:26877966 original size:60 final size:60
Alignment explanation
Indices: 26877795--26877968 Score: 188
Period size: 63 Copynumber: 2.9 Consensus size: 60
26877785 CGCCATATCA
* * * * *
26877795 CTACAAGTCTCCACCACCACCACAACCCAAACCCTACAAAGCACCACCACCCCATTACAT
1 CTACAAGTCACCACCACCACCACATCCCAAACCCTACAAACCTCCACCTCCCCATTACAT
* * * * * * *
26877855 CTACAAATCGCCGCCACCACCAATGCATCCTAAACCTTACAAAGCCT-CACCTCCTCATTATAT
1 CTACAAGTCACCACCACCACC-A--CATCCCAAACCCTACAAA-CCTCCACCTCCCCATTACAT
*
26877918 CTACAAGTCACCACCACCACCACATCCCAAGCCCTACAAACCTCCACCTCC
1 CTACAAGTCACCACCACCACCACATCCCAAACCCTACAAACCTCCACCTCC
26877969 ATCACATCCC
Statistics
Matches: 92, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
59 3 0.03
60 40 0.43
61 1 0.01
62 1 0.01
63 46 0.50
64 1 0.01
ACGTcount: A:0.33, C:0.47, G:0.05, T:0.16
Consensus pattern (60 bp):
CTACAAGTCACCACCACCACCACATCCCAAACCCTACAAACCTCCACCTCCCCATTACAT
Found at i:26882428 original size:26 final size:26
Alignment explanation
Indices: 26882385--26882462 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
26882375 TTTCATTTCT
*
26882385 ATTTTATTCC-AATAAAATTTTGAAG
1 ATTTTACTCCTAATAAAATTTTGAAG
* **
26882410 ATTTTACTCTTGGTAAAATTTTGACA-
1 ATTTTACTCCTAATAAAATTTTGA-AG
*
26882436 ATTTTGCTCCTAATAAAATTTTGAAG
1 ATTTTACTCCTAATAAAATTTTGAAG
26882462 A
1 A
26882463 AATATGTTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
25 9 0.21
26 32 0.76
27 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (26 bp):
ATTTTACTCCTAATAAAATTTTGAAG
Found at i:26887336 original size:34 final size:34
Alignment explanation
Indices: 26887287--26887352 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
26887277 GCTTAAGACC
*
26887287 CACAGAAACACATGCACGGATCCACACATTTACA
1 CACAGAAACACATGCACGGATACACACATTTACA
* * *
26887321 CACAGAAATAGATGCATGGATACACACATTTA
1 CACAGAAACACATGCACGGATACACACATTTA
26887353 TCTTCGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.42, C:0.26, G:0.14, T:0.18
Consensus pattern (34 bp):
CACAGAAACACATGCACGGATACACACATTTACA
Found at i:26891188 original size:13 final size:13
Alignment explanation
Indices: 26891170--26891194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26891160 AGTGGTTAAG
26891170 GTTTTTTGTTGAA
1 GTTTTTTGTTGAA
26891183 GTTTTTTGTTGA
1 GTTTTTTGTTGA
26891195 CACACTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.64
Consensus pattern (13 bp):
GTTTTTTGTTGAA
Found at i:26893945 original size:18 final size:18
Alignment explanation
Indices: 26893902--26893947 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 18
26893892 GAAGAAGATA
*
26893902 ACATTAATA-TTAAAAAT
1 ACATTAATATTTTAAAAT
*
26893919 A-A-AAATATTTTAAAAT
1 ACATTAATATTTTAAAAT
26893935 ACATTAATATTTT
1 ACATTAATATTTT
26893948 TAATTAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
15 4 0.17
16 9 0.39
17 2 0.09
18 8 0.35
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
ACATTAATATTTTAAAAT
Found at i:26897676 original size:15 final size:15
Alignment explanation
Indices: 26897656--26897684 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26897646 ATGTGAAATT
26897656 GATGACATTATATTA
1 GATGACATTATATTA
26897671 GATGACATTATATT
1 GATGACATTATATT
26897685 TATTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (15 bp):
GATGACATTATATTA
Found at i:26903576 original size:17 final size:17
Alignment explanation
Indices: 26903556--26903602 Score: 94
Period size: 17 Copynumber: 2.8 Consensus size: 17
26903546 CAAATTGAGG
26903556 CACTTGAGCATGCATCA
1 CACTTGAGCATGCATCA
26903573 CACTTGAGCATGCATCA
1 CACTTGAGCATGCATCA
26903590 CACTTGAGCATGC
1 CACTTGAGCATGC
26903603 CTTTCCTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (17 bp):
CACTTGAGCATGCATCA
Found at i:26913390 original size:16 final size:15
Alignment explanation
Indices: 26913360--26913399 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
26913350 GCTTGGGTCC
* *
26913360 TTTTGAATTCGAATT
1 TTTTGGATTCAAATT
26913375 TTTTCGGATTCAAATT
1 TTTT-GGATTCAAATT
26913391 TTTTGGATT
1 TTTTGGATT
26913400 TAGGCTAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.55
Consensus pattern (15 bp):
TTTTGGATTCAAATT
Found at i:26914070 original size:18 final size:17
Alignment explanation
Indices: 26914038--26914082 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
26914028 ATACTACATA
*
26914038 ATATATTAGTTATTATC
1 ATATATTTGTTATTATC
*
26914055 ATATATTTGTTTATTATT
1 ATATATTTG-TTATTATC
26914073 ATATAGTTTG
1 ATATA-TTTG
26914083 AAATATGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.33
18 12 0.50
19 4 0.17
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATATTTGTTATTATC
Found at i:26915177 original size:17 final size:17
Alignment explanation
Indices: 26915155--26915188 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26915145 TTATTTTGTA
26915155 CCATTTTGGTAAATAAT
1 CCATTTTGGTAAATAAT
*
26915172 CCATTTTGGTATATAAT
1 CCATTTTGGTAAATAAT
26915189 TATTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (17 bp):
CCATTTTGGTAAATAAT
Found at i:26915199 original size:47 final size:47
Alignment explanation
Indices: 26915126--26915219 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
26915116 GTAGGGATAT
* *
26915126 CATTTTGGTATATAAATATTTATTTTGTACCATTTTGGTAAATAATC
1 CATTTTGGTATATAAATATTTATTTTGTACCATATTGGTAAAAAATC
* **
26915173 CATTTTGGTATATAATTA-TTATTTTTGTATTATATTGGTAAAAAATC
1 CATTTTGGTATATAAATATTTA-TTTTGTACCATATTGGTAAAAAATC
26915220 ATAAAAATCG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
46 3 0.07
47 38 0.93
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (47 bp):
CATTTTGGTATATAAATATTTATTTTGTACCATATTGGTAAAAAATC
Found at i:26915664 original size:3 final size:3
Alignment explanation
Indices: 26915656--26915687 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26915646 ACCAAAAGGT
26915656 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26915688 CAAAGATCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26925712 original size:13 final size:13
Alignment explanation
Indices: 26925696--26925722 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26925686 TGTTTTTTTT
26925696 TCTCATGTTTTGA
1 TCTCATGTTTTGA
26925709 TCTCATGTTTTGA
1 TCTCATGTTTTGA
26925722 T
1 T
26925723 TATAGGAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (13 bp):
TCTCATGTTTTGA
Found at i:26943224 original size:34 final size:35
Alignment explanation
Indices: 26943154--26943233 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
26943144 TATATAAGTT
* * * * * *
26943154 TTTCGGTGTGACATTGTGTAGACGGTATATATATC
1 TTTCGGGGTGACACTGTATAAACGGTATACAGATC
26943189 TTTCGGGGTGACACTGTATAAAC-GTATACAGATC
1 TTTCGGGGTGACACTGTATAAACGGTATACAGATC
*
26943223 TTTCAGGGTGA
1 TTTCGGGGTGA
26943234 TTTTGTGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 19 0.50
35 19 0.50
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (35 bp):
TTTCGGGGTGACACTGTATAAACGGTATACAGATC
Found at i:26946754 original size:2 final size:2
Alignment explanation
Indices: 26946692--26946744 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
26946682 GAGCCAAATT
26946692 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26946734 TA TA TA TA TA T
1 TA TA TA TA TA T
26946745 TTGAATATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26949679 original size:18 final size:19
Alignment explanation
Indices: 26949638--26949680 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
26949628 TCTCTTGCTT
26949638 TAAATTTTATTTAATTGTA
1 TAAATTTTATTTAATTGTA
*
26949657 CAAATTTTA-TTAATATG-A
1 TAAATTTTATTTAAT-TGTA
26949675 TAAATT
1 TAAATT
26949681 CTGAATAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATTTTATTTAATTGTA
Found at i:26950723 original size:24 final size:24
Alignment explanation
Indices: 26950696--26950742 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26950686 ACGCCGAAAT
*
26950696 TAAAAGACAAA-AAAATCCTAAAAA
1 TAAAAGAAAAAGAAAAT-CTAAAAA
26950720 TAAAAGAAAAAGAAAATCTAAAA
1 TAAAAGAAAAAGAAAATCTAAAA
26950743 CAGTCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.72, C:0.09, G:0.06, T:0.13
Consensus pattern (24 bp):
TAAAAGAAAAAGAAAATCTAAAAA
Found at i:26962720 original size:21 final size:21
Alignment explanation
Indices: 26962689--26962739 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
26962679 CTTGTAGCCT
*
26962689 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTTCGCTTGCCTCG
*
26962710 CTGTTGCCTTCGCTTGCCTCG
1 CTGCTGCCTTCGCTTGCCTCG
26962731 CTGCTGCCT
1 CTGCTGCCT
26962740 CCACTTTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.41, G:0.22, T:0.37
Consensus pattern (21 bp):
CTGCTGCCTTCGCTTGCCTCG
Found at i:26962867 original size:66 final size:65
Alignment explanation
Indices: 26962727--26962883 Score: 242
Period size: 66 Copynumber: 2.4 Consensus size: 65
26962717 CTTCGCTTGC
* * * *
26962727 CTCGCTGCTGCCTCCACTTTAAGTTGTAGGTGGAGTTCTTCATTTTTTTTTGAGACTCTGCTTCT
1 CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATTTTTTTTTGAGACTCTGCTTCT
* * *
26962792 CTCACTGCAGCCTCCTCTTTAAGTTTTAGATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTC
1 CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCAT-TTTTTTTTGAGACTCTGCTTC
26962857 T
65 T
26962858 CTCGCTGCAGCCTCCTCTTTAAGTTG
1 CTCGCTGCAGCCTCCTCTTTAAGTTG
26962884 AACAATTTGC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
65 37 0.45
66 45 0.55
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (65 bp):
CTCGCTGCAGCCTCCTCTTTAAGTTGTAGATGGAGTTCATCATTTTTTTTTGAGACTCTGCTTCT
Found at i:26968409 original size:8 final size:8
Alignment explanation
Indices: 26968396--26968467 Score: 58
Period size: 8 Copynumber: 8.8 Consensus size: 8
26968386 CTGTTTTTAT
26968396 TAATTAAA
1 TAATTAAA
26968404 TAATTAAA
1 TAATTAAA
26968412 TAATTAAA
1 TAATTAAA
* ***
26968420 T-CTTTTC
1 TAATTAAA
26968427 T-ATTAAA
1 TAATTAAA
26968434 TAATTAAA
1 TAATTAAA
26968442 TAAGCTTAAA
1 TAA--TTAAA
26968452 TAATTATATA
1 TAATTA-A-A
26968462 TAATTA
1 TAATTA
26968468 TTTACGACCA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
7 6 0.12
8 29 0.57
9 1 0.02
10 15 0.29
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (8 bp):
TAATTAAA
Found at i:26968529 original size:18 final size:18
Alignment explanation
Indices: 26968508--26969450 Score: 230
Period size: 18 Copynumber: 53.6 Consensus size: 18
26968498 ATTAAACATG
26968508 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
26968526 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
26968544 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
26968559 ATT---TAATTTAATATA
1 ATTAAATAATTTAATATA
** *
26968574 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
26968592 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
* * *
26968607 CTT--TTAACTTAATATA
1 ATTAAATAATTTAATATA
** *
26968623 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
26968641 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
26968662 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
26968679 A-TCGATAGTGTT--TATA
1 ATTAAATAAT-TTAATATA
* *
26968695 ATTAAATACATAATTAAACATG
1 ATTAAATA-AT--TT-AATATA
26968717 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
* * *
26968735 ATT-ATTTAGTTAATATA
1 ATTAAATAATTTAATATA
26968752 ATTAAATAA-TT-ATAT-
1 ATTAAATAATTTAATATA
** *
26968767 -TT-TTTAAATTAATATA
1 ATTAAATAATTTAATATA
* *
26968783 ATT-ATTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
26968800 ATTTAATAA-TTAAAAT-
1 ATTAAATAATTTAATATA
* * *
26968816 CTT--TTAACTTAATATA
1 ATTAAATAATTTAATATA
** *
26968832 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
26968850 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
26968871 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** * *
26968888 A-TCGATAGTTT-TTATA
1 ATTAAATAATTTAATATA
* *
26968904 ATTAAATACATAATTAAACATG
1 ATTAAATA-AT--TT-AATATA
26968926 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
26968944 ATTATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
26968962 ATTAAATAA-TT-ATAT-
1 ATTAAATAATTTAATATA
* * *
26968977 CTT--TTAAATTAATATA
1 ATTAAATAATTTAATATA
** *
26968993 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
26969011 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
*
26969026 CTT---TAA-TTAATATA
1 ATTAAATAATTTAATATA
** *
26969040 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
26969058 ATTAAATAATTAAATCGTTTA
1 ATTAAATAATTTAA---TATA
26969079 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** * *
26969096 A-TCGATAGTGT--TATA
1 ATTAAATAATTTAATATA
* *
26969111 ATTAAATACATAATTAAACATG
1 ATTAAATA-AT--TT-AATATA
26969133 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
26969151 ATTATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
26969169 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
* * *
26969184 CTT--TTAACTTAATATA
1 ATTAAATAATTTAATATA
* **
26969200 ATT-ATTTCTTTAATATA
1 ATTAAATAATTTAATATA
*
26969217 ATTAAATAATTAAATATTTATA
1 ATTAAATAATT---TA-ATATA
26969239 ATTAAAT-ATTTAAT-TA
1 ATTAAATAATTTAATATA
* **
26969255 ATT-GAT-ATTTTTTATA
1 ATTAAATAATTTAATATA
* * *
26969271 ATTAATACATAATTAAACATG
1 ATT-A-A-ATAATTTAATATA
*
26969292 ATTAAATAATTTAATGTA
1 ATTAAATAATTTAATATA
** *
26969310 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
* *
26969328 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
26969349 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
26969366 A-TCGATACTGTT--TATA
1 ATTAAATAAT-TTAATATA
*
26969382 ATTAAATACATAATTAAATATC
1 ATTAAATA-AT--TT-AATATA
*
26969404 ATTAAATAATTTAATGTA
1 ATTAAATAATTTAATATA
** *
26969422 ATTATTTACTTTAATATA
1 ATTAAATAATTTAATATA
26969440 ATTAAATAATT
1 ATTAAATAATT
26969451 AAATCTTTTA
Statistics
Matches: 666, Mismatches: 161, Indels: 196
0.65 0.16 0.19
Matches are distributed among these distances:
12 10 0.02
13 18 0.03
14 22 0.03
15 57 0.09
16 56 0.08
17 101 0.15
18 250 0.38
19 14 0.02
20 5 0.01
21 57 0.09
22 76 0.11
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.47
Consensus pattern (18 bp):
ATTAAATAATTTAATATA
Found at i:26968554 original size:8 final size:8
Alignment explanation
Indices: 26968508--26968606 Score: 51
Period size: 8 Copynumber: 11.9 Consensus size: 8
26968498 ATTAAACATG
26968508 ATTAAATA
1 ATTAAATA
26968516 ATTTAATATA
1 A-TTAA-ATA
**
26968526 ATTATTTA
1 ATTAAATA
*
26968534 CTTTAATATA
1 -ATTAA-ATA
26968544 ATTAAATA
1 ATTAAATA
26968552 ATTAAAT-
1 ATTAAATA
*
26968559 ATTTAAT-
1 ATTAAATA
26968566 -TTAATATA
1 ATTAA-ATA
**
26968574 ATTATTTA
1 ATTAAATA
*
26968582 CTTTAATATA
1 -ATTAA-ATA
26968592 ATTAAATA
1 ATTAAATA
26968600 ATTAAAT
1 ATTAAAT
26968607 CTTTTAACTT
Statistics
Matches: 68, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
6 3 0.04
7 8 0.12
8 25 0.37
9 24 0.35
10 8 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTAAATA
Found at i:26968569 original size:30 final size:31
Alignment explanation
Indices: 26968519--26968577 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
26968509 TTAAATAATT
* *
26968519 TAATATAATTATTTACTTTAATATAATTAAA
1 TAATATAAATATTTAATTTAATATAATTAAA
26968550 TAAT-TAAATATTTAATTTAATATAATTA
1 TAATATAAATATTTAATTTAATATAATTA
26968578 TTTACTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (31 bp):
TAATATAAATATTTAATTTAATATAATTAAA
Found at i:26968705 original size:209 final size:210
Alignment explanation
Indices: 26968487--26969231 Score: 1342
Period size: 209 Copynumber: 3.6 Consensus size: 210
26968477 ACATTTTAAG
*
26968487 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTACTTTAATATAATTAAATA
1 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
* *
26968552 ATTAAAT-ATTTAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACT
66 ATTAAATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACT
26968616 TAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAAT
131 TAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAAT
26968681 CGATAGTGTTTATAA
196 CGATAGTGTTTATAA
26968696 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAG-TTAATATAATTAAATA
1 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
* * *
26968760 ATTATATTTTTTAAATTAATATAATTA-TTACTTTAATATAATTTAATAATTAAAATCTTTTAAC
66 ATTAAATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATT-AAATCTTTTAAC
26968824 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
130 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
*
26968889 TCGATAGTTTTTATAA
195 TCGATAGTGTTTATAA
26968905 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
1 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
*
26968970 ATTATATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATTAAATC-TTTAA-T
66 ATTAAATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACT
*
26969033 TAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAACTTAAATATTTAATTAAT
131 TAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAAT
26969098 CGATAGTG-TTATAA
196 CGATAGTGTTTATAA
26969112 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
1 TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
*
26969177 ATTAAATCTTTTAACTTAATATAATTATTT-CTTTAATATAATTAAATAATTAAAT
66 ATTAAATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT
26969232 ATTTATAATT
Statistics
Matches: 520, Mismatches: 12, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
206 25 0.05
207 99 0.19
208 117 0.22
209 209 0.40
210 47 0.09
211 23 0.04
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (210 bp):
TTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATTTAGTTTAATATAATTAAATA
ATTAAATCTTTTAAATTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACT
TAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAAT
CGATAGTGTTTATAA
Found at i:26969050 original size:47 final size:48
Alignment explanation
Indices: 26968936--26969466 Score: 345
Period size: 49 Copynumber: 10.1 Consensus size: 48
26968926 ATTAAATAAT
* * *
26968936 TTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTT-AA
26968985 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATC-TTTAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
26969032 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
* * * *
26969080 CTTAAATATTTAATTAATCGATAGTGTT-ATAATTAAATACATAATTAAA-CATGATTAAATAA
1 -TT-AATA--TAATT-AT--TTACT-TTAAT-A-TAATTAAATAATTAAATC--G-TT---TAA
* *
26969142 TTTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTTTTAA
1 -TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
**
26969191 CTTAATATAATTATTT-CTTTAATATAATTAAATAATTAAATATTTATAA
1 -TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTT-TAA
**
26969240 TTAAATATTTAATTAATTGATA-TTTTTTATAATTAATACATAATTAAA-CATGATTAAATAA
1 TT-AATA--TAATT-ATT--TACTTTAATATAATT-A-A-ATAATTAAATC--G-TT---TAA
* *
26969301 TTTAATGTAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAA
1 -TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
* * * * *
26969350 CTTAAATATTTAATTAATCGATACTGTTTATAATTAAATACATAATTAAATATCATTAAATAA
1 -TT-AATA--TAATT-AT--TTACT-TTAAT-A-TAATTAAATAATT-AA-ATCGTT---TAA
* *
26969413 TTTAATGTAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAA
1 -TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
26969462 CTTAA
1 -TTAA
26969467 ATACTTAATT
Statistics
Matches: 393, Mismatches: 37, Indels: 104
0.74 0.07 0.19
Matches are distributed among these distances:
47 44 0.11
48 37 0.09
49 79 0.20
50 7 0.02
51 5 0.01
52 22 0.06
53 6 0.02
54 45 0.11
55 17 0.04
56 22 0.06
57 38 0.10
58 17 0.04
59 18 0.05
60 10 0.03
61 11 0.03
62 10 0.03
63 5 0.01
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (48 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCGTTTAA
Found at i:26969241 original size:14 final size:14
Alignment explanation
Indices: 26969222--26969250 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26969212 ATATAATTAA
26969222 ATAATTAAATATTT
1 ATAATTAAATATTT
26969236 ATAATTAAATATTT
1 ATAATTAAATATTT
26969250 A
1 A
26969251 ATTAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATAATTAAATATTT
Found at i:26969343 original size:159 final size:159
Alignment explanation
Indices: 26968824--26969354 Score: 642
Period size: 159 Copynumber: 3.3 Consensus size: 159
26968814 ATCTTTTAAC
26968824 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTA-
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTT-AATA--TAATTAT
* ** * *** *
26968888 ATCGATAGTTTTTATAATTAAATACA-TAATTAAACATGATTAAATAATTTAATATAATT-AT-T
63 TTC--T--TTAATATAATTAAATA-ATTAAATATTTATAATTAAAT-ATTTAAT-TAATTGATAT
* * * *
26968950 TAGTT-TAATATAATTAAATAATTATATC-T--TT---TAAA
121 TTGTTATAAT-TAA-TACATAATTA-AACATGATTAAATAAT
26968985 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATC-TTTAA-TTAATATAATTATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTT-
* * * *
26969048 CTTTAATATAATTAAATAATTAAATCGTTTA-ACTTAAATATTTAATTAATCGATA-GTGTTATA
65 CTTTAATATAATTAAATAATTAAAT-ATTTATAATTAAATATTTAATTAATTGATATTTGTTATA
26969111 ATTAAATACATAATTAAACATGATTAAATAAT
129 ATT-AATACATAATTAAACATGATTAAATAAT
*
26969143 TTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTTC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTTC
*
26969208 TTTAATATAATTAAATAATTAAATATTTATAATTAAATATTTAATTAATTGATATTTTTTATAAT
66 TTTAATATAATTAAATAATTAAATATTTATAATTAAATATTTAATTAATTGATATTTGTTATAAT
26969273 TAATACATAATTAAACATGATTAAATAAT
131 TAATACATAATTAAACATGATTAAATAAT
*
26969302 TTAATGTAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAA
26969355 ATATTTAATT
Statistics
Matches: 328, Mismatches: 24, Indels: 38
0.84 0.06 0.10
Matches are distributed among these distances:
152 6 0.02
153 24 0.07
154 30 0.09
155 3 0.01
156 7 0.02
157 1 0.00
158 53 0.16
159 133 0.41
160 29 0.09
161 42 0.13
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.47
Consensus pattern (159 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTTC
TTTAATATAATTAAATAATTAAATATTTATAATTAAATATTTAATTAATTGATATTTGTTATAAT
TAATACATAATTAAACATGATTAAATAAT
Done.