Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 1 of 125
Found at i:23620 original size:7 final size:7
Alignment explanation
Indices: 1--23616 Score: 42557
Period size: 7 Copynumber: 3360.9 Consensus size: 7
1 AAACCCT
1 AAACCCT
8 AAACCCT
1 AAACCCT
15 AAACCCTT
1 AAACCC-T
23 AAACCCT
1 AAACCCT
30 AAACCCT
1 AAACCCT
37 AAACCCT
1 AAACCCT
44 AAAACCCT
1 -AAACCCT
52 AAAACCCT
1 -AAACCCT
60 AAA-CCT
1 AAACCCT
66 AAACCCT
1 AAACCCT
73 AAACCCT
1 AAACCCT
80 AAAACCCT
1 -AAACCCT
88 AAACCCCT
1 AAA-CCCT
96 AAACCCT
1 AAACCCT
103 AAAACCCT
1 -AAACCCT
111 AAACCCT
1 AAACCCT
118 AAACCCTT
1 AAACCC-T
126 AAACCCT
1 AAACCCT
133 AAACCCT
1 AAACCCT
140 AAA-CCT
1 AAACCCT
146 AAACCCT
1 AAACCCT
153 AAACCCT
1 AAACCCT
160 AAACCCT
1 AAACCCT
167 AAACCCTT
1 AAACCC-T
175 AAACCCTAT
1 AAACCC--T
184 AAACCCT
1 AAACCCT
191 AAACCCT
1 AAACCCT
198 AAACCCT
1 AAACCCT
205 AAACCCT
1 AAACCCT
212 AAACCCT
1 AAACCCT
219 AAACCCT
1 AAACCCT
226 AAACCCT
1 AAACCCT
233 AAACCCT
1 AAACCCT
240 AAACCCT
1 AAACCCT
247 AAACTACCT
1 AAAC--CCT
256 AAACCCT
1 AAACCCT
263 AAAACCCTTT
1 -AAACCC--T
273 AAA-CCT
1 AAACCCT
279 AAAACCCT
1 -AAACCCT
287 AAACCCT
1 AAACCCT
294 AAACCCT
1 AAACCCT
301 AAACCCT
1 AAACCCT
308 AAACCCT
1 AAACCCT
315 AAACCCT
1 AAACCCT
322 AAACCCT
1 AAACCCT
329 AAACCCT
1 AAACCCT
336 AAACCCT
1 AAACCCT
343 AAACCCTTT
1 AAACCC--T
352 AAACCCT
1 AAACCCT
359 AAACCCT
1 AAACCCT
366 AAACCCT
1 AAACCCT
373 AAACCCT
1 AAACCCT
380 AAACCCT
1 AAACCCT
387 AAACCCT
1 AAACCCT
394 AAACCCT
1 AAACCCT
401 AAACCCT
1 AAACCCT
408 AAACCCT
1 AAACCCT
415 AAAACCCT
1 -AAACCCT
423 -AACCCT
1 AAACCCT
429 AAACCCT
1 AAACCCT
436 -AACCCT
1 AAACCCT
442 AAACCCT
1 AAACCCT
449 AAACCCT
1 AAACCCT
456 -AACCCT
1 AAACCCT
462 AAACCCT
1 AAACCCT
469 AAACCCT
1 AAACCCT
476 AAACCCT
1 AAACCCT
483 AAACCCT
1 AAACCCT
490 AAAACCCT
1 -AAACCCT
498 AAACCCT
1 AAACCCT
505 AAACCCT
1 AAACCCT
512 AAGAAACCCT
1 ---AAACCCT
*
522 AAACCCA
1 AAACCCT
529 AAACCCT
1 AAACCCT
536 AAACCCT
1 AAACCCT
543 AAA-CCT
1 AAACCCT
549 AAACCCT
1 AAACCCT
556 AAACCCT
1 AAACCCT
563 AAAAACCCT
1 --AAACCCT
572 AAACCCT
1 AAACCCT
579 AAACCCT
1 AAACCCT
586 AAACCCT
1 AAACCCT
593 AAACCCT
1 AAACCCT
600 AAACCCT
1 AAACCCT
607 AAACCCTT
1 AAACCC-T
615 AAACCCT
1 AAACCCT
622 AAACCCT
1 AAACCCT
629 AAACCCT
1 AAACCCT
636 AAAAACCCT
1 --AAACCCT
645 -AACCCT
1 AAACCCT
651 AAAAACCCT
1 --AAACCCT
660 AAACCCT
1 AAACCCT
667 AAACCCTT
1 AAACCC-T
675 AAAACCCT
1 -AAACCCT
683 -AACCCT
1 AAACCCT
689 AAACCCT
1 AAACCCT
696 AAAACCCT
1 -AAACCCT
704 AAAACCCT
1 -AAACCCT
712 AAACCCT
1 AAACCCT
719 AAACCCT
1 AAACCCT
726 AAACCCT
1 AAACCCT
733 AAACCCT
1 AAACCCT
740 AAAACCCT
1 -AAACCCT
748 AAAACCCT
1 -AAACCCT
756 AAACCCT
1 AAACCCT
763 AAA-CCT
1 AAACCCT
769 -AACCCT
1 AAACCCT
775 AAACCCT
1 AAACCCT
782 -AACCCT
1 AAACCCT
788 AAACCCT
1 AAACCCT
795 AAA---T
1 AAACCCT
799 AAACCCT
1 AAACCCT
806 AAACCCT
1 AAACCCT
813 AAA-CCT
1 AAACCCT
819 AAACCCT
1 AAACCCT
826 AAACCCT
1 AAACCCT
833 AAACCCT
1 AAACCCT
840 AAACCCT
1 AAACCCT
847 -AACCCT
1 AAACCCT
853 AAACCCT
1 AAACCCT
860 AAACCCT
1 AAACCCT
867 AAACCCT
1 AAACCCT
874 AAACCCT
1 AAACCCT
881 AAACCCT
1 AAACCCT
888 AAACCCT
1 AAACCCT
895 AAACCCT
1 AAACCCT
902 AAACCCT
1 AAACCCT
909 AAACCCT
1 AAACCCT
916 AAACCCT
1 AAACCCT
923 AAAACCCT
1 -AAACCCT
931 AAACCCT
1 AAACCCT
938 AAACCCT
1 AAACCCT
945 AAA-CCT
1 AAACCCT
951 AAACCCT
1 AAACCCT
958 AAACCCT
1 AAACCCT
965 AAACCCT
1 AAACCCT
972 AAACCCT
1 AAACCCT
979 AAACCCT
1 AAACCCT
986 AAACCCT
1 AAACCCT
993 AAACCCT
1 AAACCCT
1000 AAACCCT
1 AAACCCT
1007 AAACCCT
1 AAACCCT
1014 AAACCCT
1 AAACCCT
1021 AAACCCT
1 AAACCCT
1028 -AACCCT
1 AAACCCT
1034 AAACCCT
1 AAACCCT
1041 AAACCCT
1 AAACCCT
*
1048 TAACCCT
1 AAACCCT
1055 -AACCCT
1 AAACCCT
1061 AAACCCT
1 AAACCCT
1068 AAACCCT
1 AAACCCT
1075 AAAACCCT
1 -AAACCCT
1083 AAACCCT
1 AAACCCT
1090 AAACCCT
1 AAACCCT
1097 AAACCCT
1 AAACCCT
1104 AAACCCT
1 AAACCCT
1111 AAACCCT
1 AAACCCT
1118 AAACCCT
1 AAACCCT
*
1125 AAACCTT
1 AAACCCT
1132 AAACCCTT
1 AAACCC-T
1140 AAA-CCT
1 AAACCCT
1146 AAACCCT
1 AAACCCT
1153 AAACCCT
1 AAACCCT
1160 AAACCCT
1 AAACCCT
1167 AAACCCT
1 AAACCCT
1174 AAA-CCT
1 AAACCCT
1180 AAACCCT
1 AAACCCT
1187 AAACCCT
1 AAACCCT
1194 AAACCCT
1 AAACCCT
1201 AAACCCT
1 AAACCCT
1208 AAACCCT
1 AAACCCT
1215 AAACCCT
1 AAACCCT
1222 AAACCCT
1 AAACCCT
1229 AAACCCT
1 AAACCCT
1236 AAACCCT
1 AAACCCT
1243 AAACCCT
1 AAACCCT
1250 AAACCCTT
1 AAACCC-T
1258 AAACCCT
1 AAACCCT
1265 AAACCCT
1 AAACCCT
1272 AAACCCT
1 AAACCCT
1279 AAACCCT
1 AAACCCT
1286 AAACCCT
1 AAACCCT
1293 AAACCCT
1 AAACCCT
1300 AAACCCT
1 AAACCCT
1307 AAACCCT
1 AAACCCT
1314 AAACCCT
1 AAACCCT
1321 AAAACCCT
1 -AAACCCT
1329 AAACCCT
1 AAACCCT
1336 AAACCCT
1 AAACCCT
1343 AAACCCT
1 AAACCCT
1350 AAACCCT
1 AAACCCT
1357 AAACCCT
1 AAACCCT
1364 AAACCCT
1 AAACCCT
1371 AAACCCT
1 AAACCCT
1378 AAA-CCT
1 AAACCCT
1384 AAACCCT
1 AAACCCT
1391 AAAACCCT
1 -AAACCCT
1399 AAACCCT
1 AAACCCT
1406 AAACCCT
1 AAACCCT
1413 AAACCCT
1 AAACCCT
1420 AAACCCT
1 AAACCCT
1427 AAACCCT
1 AAACCCT
1434 AAACCCT
1 AAACCCT
1441 AAACCCT
1 AAACCCT
1448 AAACCCT
1 AAACCCT
1455 AAACCCT
1 AAACCCT
1462 AAACCCT
1 AAACCCT
1469 AAACCCT
1 AAACCCT
1476 AAACCCT
1 AAACCCT
1483 AAACCCT
1 AAACCCT
1490 AAACCCT
1 AAACCCT
1497 AAACCCT
1 AAACCCT
1504 AAACCCT
1 AAACCCT
1511 AAACCCT
1 AAACCCT
1518 AAACCCT
1 AAACCCT
1525 AAACCCT
1 AAACCCT
1532 AAACCCT
1 AAACCCT
1539 AAACCCT
1 AAACCCT
1546 AAACCCT
1 AAACCCT
1553 AAACCCT
1 AAACCCT
1560 AAACCCT
1 AAACCCT
1567 AAACCCT
1 AAACCCT
1574 AAACCCT
1 AAACCCT
1581 AAAACCCT
1 -AAACCCT
1589 AAAACCCT
1 -AAACCCT
1597 AAACCCT
1 AAACCCT
1604 AAACCCT
1 AAACCCT
1611 AAACCCT
1 AAACCCT
1618 AAACCCT
1 AAACCCT
1625 AAACCCT
1 AAACCCT
1632 AAAACCCT
1 -AAACCCT
1640 AAACCCT
1 AAACCCT
1647 AAAACCCT
1 -AAACCCT
1655 AAACCCT
1 AAACCCT
1662 AAACCCT
1 AAACCCT
1669 AAACCCT
1 AAACCCT
1676 AAAACCCT
1 -AAACCCT
*
1684 AAACCCA
1 AAACCCT
1691 AAACCCT
1 AAACCCT
1698 AAACCCTT
1 AAACCC-T
1706 AAACCCTT
1 AAACCC-T
1714 AAAACCCT
1 -AAACCCT
1722 AAACCCT
1 AAACCCT
1729 AAACCCT
1 AAACCCT
1736 -AACCCT
1 AAACCCT
1742 AAAACCCT
1 -AAACCCT
1750 AAACCCT
1 AAACCCT
1757 AAACCCT
1 AAACCCT
1764 AAAACCCT
1 -AAACCCT
1772 AAAAAACCCT
1 ---AAACCCT
1782 AAACCCT
1 AAACCCT
1789 AAACCCT
1 AAACCCT
1796 AAACCCT
1 AAACCCT
1803 AAACCCT
1 AAACCCT
1810 AAACCCT
1 AAACCCT
1817 AAACCCT
1 AAACCCT
1824 AAACCCT
1 AAACCCT
1831 AAA-CCT
1 AAACCCT
1837 AAACCCT
1 AAACCCT
1844 AAACCCT
1 AAACCCT
1851 AAA-CCT
1 AAACCCT
1857 AAACCCT
1 AAACCCT
1864 AAACCCT
1 AAACCCT
1871 AAACCCT
1 AAACCCT
1878 AAACCCT
1 AAACCCT
1885 AAA-CCT
1 AAACCCT
1891 AAACCCT
1 AAACCCT
1898 AAACCCT
1 AAACCCT
1905 AAACCCT
1 AAACCCT
1912 AAACCCT
1 AAACCCT
1919 AAACCCT
1 AAACCCT
1926 AAACCCT
1 AAACCCT
1933 AAAACCCT
1 -AAACCCT
1941 AAACCCT
1 AAACCCT
1948 AAACCCT
1 AAACCCT
1955 AAACCCT
1 AAACCCT
1962 AAACCCT
1 AAACCCT
1969 AAACCCT
1 AAACCCT
1976 AAACCCT
1 AAACCCT
1983 AAACCCT
1 AAACCCT
1990 AAACCCT
1 AAACCCT
1997 AAACCCT
1 AAACCCT
2004 AAACCCT
1 AAACCCT
2011 AAACCCT
1 AAACCCT
2018 AAACCCT
1 AAACCCT
2025 AAACCCTT
1 AAACCC-T
2033 AAAAACCCT
1 --AAACCCT
2042 AAACCCT
1 AAACCCT
2049 AAACCCT
1 AAACCCT
2056 AAAACCCT
1 -AAACCCT
2064 AAACCCT
1 AAACCCT
2071 AAACCCT
1 AAACCCT
2078 AAAAACCCT
1 --AAACCCT
2087 AAA-CCT
1 AAACCCT
2093 AAACCCT
1 AAACCCT
2100 AAACCCT
1 AAACCCT
2107 AAACCCT
1 AAACCCT
2114 AAACCCT
1 AAACCCT
2121 AAACCCT
1 AAACCCT
2128 AAACCCT
1 AAACCCT
2135 AAACCCT
1 AAACCCT
2142 -AACCCT
1 AAACCCT
2148 AAACCCT
1 AAACCCT
2155 AAACCCT
1 AAACCCT
2162 AAACCCT
1 AAACCCT
2169 AAACCCT
1 AAACCCT
2176 AAACCCT
1 AAACCCT
2183 AAACCCT
1 AAACCCT
2190 AAACCCT
1 AAACCCT
2197 AAACCCT
1 AAACCCT
2204 -AACCCT
1 AAACCCT
2210 AAACCCT
1 AAACCCT
2217 AAACCCT
1 AAACCCT
2224 AAACCCT
1 AAACCCT
2231 AAACCCTT
1 AAACCC-T
2239 AAACCCT
1 AAACCCT
2246 AAACCCT
1 AAACCCT
2253 -AACCCT
1 AAACCCT
2259 AAACCCT
1 AAACCCT
2266 AAACCCT
1 AAACCCT
2273 AAACCCTT
1 AAACCC-T
2281 AAACCCT
1 AAACCCT
2288 AAACCCT
1 AAACCCT
2295 AAACCCT
1 AAACCCT
2302 AAAACCCT
1 -AAACCCT
2310 AAACCCT
1 AAACCCT
2317 AAACCCT
1 AAACCCT
2324 AAACCCT
1 AAACCCT
2331 AAACCCT
1 AAACCCT
2338 AAACCCT
1 AAACCCT
2345 AAACCCT
1 AAACCCT
2352 AAACCCT
1 AAACCCT
2359 AAACCCT
1 AAACCCT
2366 AAACCCT
1 AAACCCT
2373 AAACCCT
1 AAACCCT
2380 AAACCCT
1 AAACCCT
*
2387 AAACCTAT
1 AAACC-CT
2395 AAACCCT
1 AAACCCT
2402 AAACCCT
1 AAACCCT
2409 AAACCCT
1 AAACCCT
2416 AAACCCT
1 AAACCCT
2423 AAACCCTT
1 AAACCC-T
2431 AAAACCCT
1 -AAACCCT
2439 AAACCCT
1 AAACCCT
2446 AAAACCCT
1 -AAACCCT
2454 AAACCCT
1 AAACCCT
2461 AAACCCT
1 AAACCCT
2468 AAACCCT
1 AAACCCT
2475 AAACCCT
1 AAACCCT
2482 AAACCCT
1 AAACCCT
2489 AAACCCT
1 AAACCCT
2496 AAACCCT
1 AAACCCT
2503 AAACCCT
1 AAACCCT
2510 -AACCCT
1 AAACCCT
2516 AAACCCT
1 AAACCCT
2523 AAACCCT
1 AAACCCT
2530 AAACCCT
1 AAACCCT
2537 AAAACCCT
1 -AAACCCT
2545 AAACCCT
1 AAACCCT
2552 AAACCCT
1 AAACCCT
2559 AAACCCT
1 AAACCCT
2566 AAACCCT
1 AAACCCT
2573 AAACCCT
1 AAACCCT
2580 AAACCCT
1 AAACCCT
2587 AAAACCCT
1 -AAACCCT
2595 AAACCCT
1 AAACCCT
2602 AAAACCCT
1 -AAACCCT
2610 AAACCCT
1 AAACCCT
2617 AAACCCT
1 AAACCCT
2624 AAACCCT
1 AAACCCT
2631 AAACCCT
1 AAACCCT
2638 AAACCCT
1 AAACCCT
2645 AAACCCT
1 AAACCCT
2652 AAACCCT
1 AAACCCT
2659 AAACCCT
1 AAACCCT
2666 AAACCCTT
1 AAACCC-T
2674 AAACCCT
1 AAACCCT
2681 AAAACCCT
1 -AAACCCT
*
2689 AAAACCT
1 AAACCCT
2696 AAACCCT
1 AAACCCT
*
2703 -AACCTT
1 AAACCCT
2709 AAACCCT
1 AAACCCT
2716 AAACCCT
1 AAACCCT
2723 AAACCCT
1 AAACCCT
2730 AAACCCT
1 AAACCCT
2737 AAAACCCT
1 -AAACCCT
2745 AAAAACCCT
1 --AAACCCT
2754 AAACCCT
1 AAACCCT
*
2761 AAAACCT
1 AAACCCT
2768 AAAACCCT
1 -AAACCCT
2776 AAACCCT
1 AAACCCT
2783 AAAACCCT
1 -AAACCCT
2791 AAACCCT
1 AAACCCT
2798 AAACCCT
1 AAACCCT
2805 AAACCCT
1 AAACCCT
2812 AAAACCCT
1 -AAACCCT
2820 AAACCCT
1 AAACCCT
2827 AAAAACCCT
1 --AAACCCT
2836 AAACCCT
1 AAACCCT
2843 AAACCCT
1 AAACCCT
2850 AAACCCT
1 AAACCCT
2857 AAACCCCT
1 AAA-CCCT
2865 AAACCCT
1 AAACCCT
2872 AAACCCT
1 AAACCCT
2879 AAACCCT
1 AAACCCT
2886 AAACCCT
1 AAACCCT
2893 AAACCCT
1 AAACCCT
2900 AAACCCT
1 AAACCCT
2907 AAACCCT
1 AAACCCT
2914 AAACCCT
1 AAACCCT
2921 AAACCCT
1 AAACCCT
2928 AAACCCT
1 AAACCCT
2935 AAACCCT
1 AAACCCT
2942 AAACCCT
1 AAACCCT
2949 AAACCCT
1 AAACCCT
2956 AAACCCTT
1 AAACCC-T
2964 AAACCCT
1 AAACCCT
2971 AAACCCT
1 AAACCCT
2978 AAACCCT
1 AAACCCT
2985 AAACCCT
1 AAACCCT
2992 AAACCCT
1 AAACCCT
2999 AAACCCT
1 AAACCCT
3006 AAACCCT
1 AAACCCT
3013 AAACCCT
1 AAACCCT
3020 AAACCCT
1 AAACCCT
3027 AAACCCT
1 AAACCCT
3034 AAACCCT
1 AAACCCT
3041 AAACCCT
1 AAACCCT
3048 AAACCCT
1 AAACCCT
3055 AAACCCT
1 AAACCCT
*
3062 TAACCCT
1 AAACCCT
3069 AAACCCT
1 AAACCCT
3076 AAACCCT
1 AAACCCT
3083 AAACCCT
1 AAACCCT
3090 AAACCCT
1 AAACCCT
3097 AAACCCT
1 AAACCCT
3104 AAACCCT
1 AAACCCT
3111 AAACCCT
1 AAACCCT
3118 AAACCCT
1 AAACCCT
3125 AAACCCT
1 AAACCCT
3132 AAACCCT
1 AAACCCT
3139 AAACCCT
1 AAACCCT
3146 AAACCCT
1 AAACCCT
*
3153 AAAACCT
1 AAACCCT
3160 AAACCCT
1 AAACCCT
3167 AAACCCT
1 AAACCCT
3174 AAACCCT
1 AAACCCT
3181 AAACCCT
1 AAACCCT
3188 AAACCCTT
1 AAACCC-T
3196 AAACCCT
1 AAACCCT
3203 AAA-CCT
1 AAACCCT
3209 AAACCCT
1 AAACCCT
3216 AAACCCTT
1 AAACCC-T
3224 AAACCCT
1 AAACCCT
3231 AAACCCT
1 AAACCCT
3238 AAACCCT
1 AAACCCT
3245 AAAAAACCCT
1 ---AAACCCT
3255 AAACCCT
1 AAACCCT
3262 AAACCCT
1 AAACCCT
3269 AAACCCT
1 AAACCCT
3276 AAACCCT
1 AAACCCT
3283 AAACCCT
1 AAACCCT
3290 AAACCCTT
1 AAACCC-T
3298 AAA-CCT
1 AAACCCT
3304 AAACCCT
1 AAACCCT
3311 AAACCCT
1 AAACCCT
3318 AAACCCT
1 AAACCCT
3325 AAACCCTT
1 AAACCC-T
3333 AAACCCT
1 AAACCCT
3340 -AACCCT
1 AAACCCT
3346 AAACCCT
1 AAACCCT
3353 AAACCCT
1 AAACCCT
3360 AAACCCT
1 AAACCCT
3367 AAACCCT
1 AAACCCT
3374 AAACCCT
1 AAACCCT
3381 AAAACCCT
1 -AAACCCT
3389 AAACCCT
1 AAACCCT
3396 AAACCCT
1 AAACCCT
3403 AAACCCT
1 AAACCCT
3410 AAACCCT
1 AAACCCT
3417 AAACCCT
1 AAACCCT
3424 AAAACCCT
1 -AAACCCT
3432 AAACCCT
1 AAACCCT
3439 AAACCCT
1 AAACCCT
3446 AAACCCT
1 AAACCCT
3453 AAACCCT
1 AAACCCT
3460 AAACCCT
1 AAACCCT
3467 AAACCCT
1 AAACCCT
3474 AAAAACCCGT
1 --AAACCC-T
3484 AAAACCCT
1 -AAACCCT
3492 AAACCCT
1 AAACCCT
3499 AAACCCCT
1 AAA-CCCT
3507 -AACCCT
1 AAACCCT
3513 AAACCCT
1 AAACCCT
3520 AAACCCT
1 AAACCCT
3527 AAACCCT
1 AAACCCT
3534 AAGACCCT
1 AA-ACCCT
3542 AAACCCT
1 AAACCCT
3549 AAACCCT
1 AAACCCT
3556 AAACCCT
1 AAACCCT
3563 AAACCCT
1 AAACCCT
3570 AAACCCT
1 AAACCCT
3577 AAACCCTT
1 AAACCC-T
3585 AAACCCT
1 AAACCCT
3592 AAACCCT
1 AAACCCT
3599 AAACCCT
1 AAACCCT
3606 AAACCCT
1 AAACCCT
3613 AAACCCT
1 AAACCCT
3620 -AACCCT
1 AAACCCT
3626 AAAACCCT
1 -AAACCCT
3634 AAACCCT
1 AAACCCT
3641 -AACCCT
1 AAACCCT
3647 AAACCCTT
1 AAACCC-T
3655 AAACCCT
1 AAACCCT
3662 AAACCCT
1 AAACCCT
3669 AAACCCT
1 AAACCCT
3676 AAACCCT
1 AAACCCT
3683 AAACCCT
1 AAACCCT
3690 AAACCCT
1 AAACCCT
3697 AAACCCT
1 AAACCCT
3704 AAACCCT
1 AAACCCT
3711 AAACCCT
1 AAACCCT
3718 AAACCCT
1 AAACCCT
3725 -AACCCT
1 AAACCCT
3731 AAACCCT
1 AAACCCT
3738 -AACCCT
1 AAACCCT
3744 AAACCCT
1 AAACCCT
3751 AAACCCT
1 AAACCCT
3758 AAACCCT
1 AAACCCT
3765 AAACCCT
1 AAACCCT
3772 AAACCCT
1 AAACCCT
3779 AAACCCT
1 AAACCCT
3786 AAACCCT
1 AAACCCT
3793 AAACCCT
1 AAACCCT
3800 AAACCCT
1 AAACCCT
3807 AAACCCT
1 AAACCCT
3814 AAACCCT
1 AAACCCT
3821 AAACCCT
1 AAACCCT
3828 AAA-CCT
1 AAACCCT
3834 AAACCCT
1 AAACCCT
3841 AAACCCT
1 AAACCCT
3848 AAACCCT
1 AAACCCT
3855 AAACCCT
1 AAACCCT
3862 AAAACCCT
1 -AAACCCT
3870 AAACCCT
1 AAACCCT
3877 AAACCCT
1 AAACCCT
3884 AAACCCT
1 AAACCCT
3891 AAACCCT
1 AAACCCT
3898 AAAACCCT
1 -AAACCCT
3906 AAACCCT
1 AAACCCT
3913 AAACCCT
1 AAACCCT
3920 AAACCCT
1 AAACCCT
3927 AAACCCT
1 AAACCCT
3934 AAACCCT
1 AAACCCT
3941 AAAACCCT
1 -AAACCCT
3949 AAACCCT
1 AAACCCT
3956 AAACCCT
1 AAACCCT
3963 AAAACCCT
1 -AAACCCT
3971 AAACCCTT
1 AAACCC-T
3979 AAACCCT
1 AAACCCT
3986 AAACCCT
1 AAACCCT
3993 AAACCCT
1 AAACCCT
4000 AAACCCT
1 AAACCCT
4007 AAACCCT
1 AAACCCT
4014 AAACCCT
1 AAACCCT
4021 ATAACCCT
1 A-AACCCT
4029 AAACCCT
1 AAACCCT
4036 AAACCCT
1 AAACCCT
4043 AAACCCT
1 AAACCCT
4050 AAACCCT
1 AAACCCT
4057 AAACCCT
1 AAACCCT
4064 AAACCCT
1 AAACCCT
4071 AAAACCCT
1 -AAACCCT
4079 AAACCCT
1 AAACCCT
4086 AAACCCT
1 AAACCCT
4093 AAACCCT
1 AAACCCT
4100 AAACCCT
1 AAACCCT
4107 AAACCCT
1 AAACCCT
4114 AAAACCCT
1 -AAACCCT
4122 AAACCCT
1 AAACCCT
4129 AAACCCT
1 AAACCCT
4136 AAACCCT
1 AAACCCT
4143 AAACCCT
1 AAACCCT
4150 AAACCCT
1 AAACCCT
4157 AAA-CCT
1 AAACCCT
*
4163 TAACCCT
1 AAACCCT
4170 AAACCCT
1 AAACCCT
4177 AAACCCT
1 AAACCCT
4184 AAACCCCT
1 AAA-CCCT
4192 AAAACCCT
1 -AAACCCT
4200 AAACCCTT
1 AAACCC-T
4208 AAACCCTT
1 AAACCC-T
*
4216 AAAACCT
1 AAACCCT
4223 AAA--CT
1 AAACCCT
4228 AAAACCCT
1 -AAACCCT
4236 AAACCCT
1 AAACCCT
4243 AAACCCT
1 AAACCCT
4250 -AACCCT
1 AAACCCT
4256 AAACCCT
1 AAACCCT
4263 AAACCCT
1 AAACCCT
4270 AAACCCT
1 AAACCCT
4277 -AACCCT
1 AAACCCT
4283 AAACCCT
1 AAACCCT
4290 AAACCCT
1 AAACCCT
4297 AAACCCT
1 AAACCCT
4304 AAACCCT
1 AAACCCT
4311 AAACCCT
1 AAACCCT
4318 AAACCCT
1 AAACCCT
4325 AAAACCCT
1 -AAACCCT
4333 AAACCCT
1 AAACCCT
4340 AAACCCT
1 AAACCCT
4347 AAACCCT
1 AAACCCT
4354 AAAAACCCT
1 --AAACCCT
4363 AAACCCT
1 AAACCCT
4370 AAACCCT
1 AAACCCT
4377 AAACCCTT
1 AAACCC-T
4385 AAACCCT
1 AAACCCT
4392 AAAACCCT
1 -AAACCCT
4400 AAACCCT
1 AAACCCT
4407 AAACCCT
1 AAACCCT
4414 AAACCCT
1 AAACCCT
4421 AAACCCT
1 AAACCCT
4428 AAACCCT
1 AAACCCT
4435 AAACCCT
1 AAACCCT
4442 AAACCCT
1 AAACCCT
4449 AAACCCT
1 AAACCCT
4456 AAACCCT
1 AAACCCT
4463 AAACCCT
1 AAACCCT
4470 AAACCCT
1 AAACCCT
4477 AAACCCT
1 AAACCCT
4484 AAACCCT
1 AAACCCT
4491 AAACCCCT
1 AAA-CCCT
4499 AAAACCCTT
1 -AAACCC-T
4508 AAACCCT
1 AAACCCT
4515 AAACCCT
1 AAACCCT
4522 -AACCCT
1 AAACCCT
4528 AAACCCT
1 AAACCCT
4535 AAAACCCT
1 -AAACCCT
4543 AAACCCT
1 AAACCCT
4550 AAACCCT
1 AAACCCT
4557 AAACCCT
1 AAACCCT
4564 AAACCCT
1 AAACCCT
4571 AAACCCT
1 AAACCCT
4578 AAACCCT
1 AAACCCT
4585 AAACCCT
1 AAACCCT
4592 AAACCCT
1 AAACCCT
4599 AAACCCT
1 AAACCCT
4606 AAACCCT
1 AAACCCT
4613 AAACCCT
1 AAACCCT
4620 AAACCCT
1 AAACCCT
4627 AAAACCCT
1 -AAACCCT
4635 AAACCCT
1 AAACCCT
4642 AAACCCT
1 AAACCCT
4649 AAACCCCT
1 AAA-CCCT
4657 AAACCCT
1 AAACCCT
4664 AAACCCT
1 AAACCCT
4671 AAACCCT
1 AAACCCT
4678 AAACCCT
1 AAACCCT
4685 AAACCCCT
1 AAA-CCCT
4693 AAACCCT
1 AAACCCT
4700 AAACCCT
1 AAACCCT
4707 AAACCCT
1 AAACCCT
4714 AAACCCT
1 AAACCCT
4721 AAACCCT
1 AAACCCT
4728 AAACCCT
1 AAACCCT
4735 AAACCCT
1 AAACCCT
4742 AAACCCT
1 AAACCCT
4749 AAACCCTT
1 AAACCC-T
4757 AAACCCT
1 AAACCCT
4764 AAACCCT
1 AAACCCT
4771 AAACCCT
1 AAACCCT
4778 AAACCCT
1 AAACCCT
4785 AAACCCT
1 AAACCCT
4792 AAACCCT
1 AAACCCT
4799 AAACCCT
1 AAACCCT
4806 AAAACCCCT
1 -AAA-CCCT
4815 AAACCCT
1 AAACCCT
4822 AAACCCT
1 AAACCCT
4829 AAACCCTTT
1 AAACCC--T
4838 AAACCCT
1 AAACCCT
4845 AAACCCT
1 AAACCCT
4852 AAACCCT
1 AAACCCT
4859 AAACCCT
1 AAACCCT
4866 AAACCCT
1 AAACCCT
4873 -AACCCT
1 AAACCCT
4879 AAACCCT
1 AAACCCT
4886 AAACCCT
1 AAACCCT
4893 AAACCCT
1 AAACCCT
4900 AAACCCCT
1 AAA-CCCT
4908 AAACCCT
1 AAACCCT
4915 AAACCCT
1 AAACCCT
4922 AAACCCT
1 AAACCCT
4929 AAACCCT
1 AAACCCT
4936 AAACCCT
1 AAACCCT
4943 AAACCCT
1 AAACCCT
4950 AAACCCT
1 AAACCCT
4957 AAAAACCCT
1 --AAACCCT
4966 AAACCCT
1 AAACCCT
4973 AAACCCT
1 AAACCCT
4980 AAACCCT
1 AAACCCT
4987 AAA-CCT
1 AAACCCT
4993 AAACCCT
1 AAACCCT
5000 -AACCCT
1 AAACCCT
5006 AAACCCT
1 AAACCCT
5013 AAACCCT
1 AAACCCT
5020 AAACCCT
1 AAACCCT
5027 AAACCCT
1 AAACCCT
5034 AAACCCT
1 AAACCCT
5041 AAACCCT
1 AAACCCT
5048 AAACCCT
1 AAACCCT
5055 AAAACCCT
1 -AAACCCT
5063 AAACCCCT
1 AAA-CCCT
5071 AAACCCT
1 AAACCCT
5078 AAACCCT
1 AAACCCT
5085 AAACCCT
1 AAACCCT
5092 AAAACCCT
1 -AAACCCT
5100 AAACCCT
1 AAACCCT
5107 AAAACCCT
1 -AAACCCT
5115 AAACCCT
1 AAACCCT
5122 AAACCCT
1 AAACCCT
5129 AAAACCCT
1 -AAACCCT
5137 AAAACCCT
1 -AAACCCT
5145 AAAACCCT
1 -AAACCCT
5153 AAACCCT
1 AAACCCT
5160 AAACCCT
1 AAACCCT
5167 AAACCCT
1 AAACCCT
5174 AAA-CCT
1 AAACCCT
5180 -AACCCT
1 AAACCCT
5186 AAACCCT
1 AAACCCT
5193 AAACCCT
1 AAACCCT
5200 AAACCCT
1 AAACCCT
5207 AAAACCCT
1 -AAACCCT
5215 AAACCCT
1 AAACCCT
5222 AAACCCT
1 AAACCCT
5229 AAACCCT
1 AAACCCT
5236 AAACCCT
1 AAACCCT
5243 -AACCCT
1 AAACCCT
5249 AAAACCCT
1 -AAACCCT
5257 AAACCCT
1 AAACCCT
5264 AAACCCT
1 AAACCCT
5271 AAACCCT
1 AAACCCT
5278 AAACCCT
1 AAACCCT
5285 AAACCCT
1 AAACCCT
5292 AAACCCT
1 AAACCCT
5299 AAACCCT
1 AAACCCT
5306 AAACCCT
1 AAACCCT
5313 AAACCCT
1 AAACCCT
5320 AAACCCT
1 AAACCCT
5327 -AACCCT
1 AAACCCT
*
5333 AAAAAACCT
1 --AAACCCT
5342 AAACCCT
1 AAACCCT
5349 AAACCCT
1 AAACCCT
5356 AAACCCT
1 AAACCCT
5363 AAACCCT
1 AAACCCT
5370 AAACCCT
1 AAACCCT
5377 AAACCCT
1 AAACCCT
5384 AAACCCTT
1 AAACCC-T
5392 AAACCCT
1 AAACCCT
5399 AAACCCT
1 AAACCCT
5406 -AACCCT
1 AAACCCT
5412 AAAACCCT
1 -AAACCCT
5420 AAACCCT
1 AAACCCT
5427 AAAAACCCT
1 --AAACCCT
5436 AAACCCT
1 AAACCCT
5443 AAACCCT
1 AAACCCT
5450 AAACCCT
1 AAACCCT
5457 AAACCCT
1 AAACCCT
5464 AAACCCT
1 AAACCCT
5471 AAACCCT
1 AAACCCT
5478 AAACCCT
1 AAACCCT
5485 AAACCCT
1 AAACCCT
5492 AAACCCT
1 AAACCCT
5499 AAACCCT
1 AAACCCT
5506 AAACCCT
1 AAACCCT
5513 AAACCCCCCT
1 AAA---CCCT
5523 AAACCCT
1 AAACCCT
5530 AAACCCT
1 AAACCCT
5537 AAACCCT
1 AAACCCT
5544 AAACCCTT
1 AAACCC-T
5552 AAAACCCT
1 -AAACCCT
5560 AAACCCT
1 AAACCCT
5567 AAACCCT
1 AAACCCT
5574 AAACCCT
1 AAACCCT
5581 AAACCCCT
1 AAA-CCCT
5589 AAACCCT
1 AAACCCT
5596 AAACCCT
1 AAACCCT
5603 AAACCCT
1 AAACCCT
5610 AAACCCT
1 AAACCCT
5617 AAACCCT
1 AAACCCT
5624 AAACCCT
1 AAACCCT
5631 AAACCCTT
1 AAACCC-T
5639 AAACCCT
1 AAACCCT
5646 AAACCCT
1 AAACCCT
5653 AAACCCT
1 AAACCCT
5660 AAACCCT
1 AAACCCT
5667 AAACCCT
1 AAACCCT
5674 AAACCCT
1 AAACCCT
5681 AAACCCT
1 AAACCCT
5688 -AACCCT
1 AAACCCT
5694 AAACCCT
1 AAACCCT
5701 AAACCCT
1 AAACCCT
5708 AAACCCT
1 AAACCCT
5715 AAACCCT
1 AAACCCT
5722 AAACCC-
1 AAACCCT
5728 AAACCCT
1 AAACCCT
5735 AAACCCTT
1 AAACCC-T
5743 AAACCCTT
1 AAACCC-T
5751 AAACCCT
1 AAACCCT
5758 -AACCCT
1 AAACCCT
5764 AAACCCT
1 AAACCCT
5771 AAACCCTT
1 AAACCC-T
5779 AAAACCCT
1 -AAACCCT
5787 AAAAACCCT
1 --AAACCCT
5796 AAACCCT
1 AAACCCT
5803 AAACCCT
1 AAACCCT
5810 AAACCCT
1 AAACCCT
5817 AAACCCT
1 AAACCCT
5824 AAACCCT
1 AAACCCT
5831 AAACCCT
1 AAACCCT
5838 AAACCCT
1 AAACCCT
5845 AAACCCT
1 AAACCCT
5852 AAAACCCT
1 -AAACCCT
5860 AAACCCT
1 AAACCCT
5867 AAACCCT
1 AAACCCT
5874 AAAACCCT
1 -AAACCCT
5882 AAACCCT
1 AAACCCT
5889 AAACCCT
1 AAACCCT
5896 AAACCCT
1 AAACCCT
5903 AAACCCT
1 AAACCCT
5910 AAACCCT
1 AAACCCT
5917 AAA-CCT
1 AAACCCT
5923 AAACCCT
1 AAACCCT
5930 AAACCCT
1 AAACCCT
5937 AAACCCT
1 AAACCCT
5944 AAACCCT
1 AAACCCT
5951 AAAACCCT
1 -AAACCCT
5959 AAACCCT
1 AAACCCT
5966 AAACCCT
1 AAACCCT
5973 AAACCCT
1 AAACCCT
5980 AAAACCCT
1 -AAACCCT
5988 AAACCCT
1 AAACCCT
5995 AAACCCT
1 AAACCCT
6002 AAACCCT
1 AAACCCT
6009 AAACCCT
1 AAACCCT
6016 AAACCCT
1 AAACCCT
6023 AAACCCT
1 AAACCCT
6030 AAACCCT
1 AAACCCT
6037 AAACCCT
1 AAACCCT
6044 AAACCCT
1 AAACCCT
6051 AAACCCT
1 AAACCCT
6058 AAACCCT
1 AAACCCT
6065 AAACCCT
1 AAACCCT
6072 AAACCCT
1 AAACCCT
6079 AAACCCT
1 AAACCCT
6086 AAACCCT
1 AAACCCT
6093 AAACCCT
1 AAACCCT
6100 AAACCCT
1 AAACCCT
6107 AAACCCT
1 AAACCCT
6114 AAACCCT
1 AAACCCT
6121 AAACCCT
1 AAACCCT
6128 AAACCCT
1 AAACCCT
6135 AAACCCT
1 AAACCCT
6142 AAACCCT
1 AAACCCT
6149 AAACCCT
1 AAACCCT
6156 AAACCCT
1 AAACCCT
6163 AAAACCCT
1 -AAACCCT
6171 AAACCCT
1 AAACCCT
6178 AAACCCT
1 AAACCCT
6185 AAACCCT
1 AAACCCT
6192 AAACCCT
1 AAACCCT
6199 AAACCCT
1 AAACCCT
6206 AAACCCT
1 AAACCCT
6213 AAACCCT
1 AAACCCT
6220 AAAACCCT
1 -AAACCCT
6228 AAACCCT
1 AAACCCT
6235 AAACCCT
1 AAACCCT
6242 AAAACCCT
1 -AAACCCT
6250 AAACCCT
1 AAACCCT
6257 AAACCCT
1 AAACCCT
6264 AAACCCT
1 AAACCCT
6271 AAACCCT
1 AAACCCT
6278 AAACCCT
1 AAACCCT
6285 AAAACCCT
1 -AAACCCT
6293 AAACCCT
1 AAACCCT
6300 AAACCCT
1 AAACCCT
6307 AAACCCT
1 AAACCCT
6314 AAACCCT
1 AAACCCT
6321 AAACCCT
1 AAACCCT
6328 AAACCCT
1 AAACCCT
6335 AAACCCT
1 AAACCCT
6342 AAA-CCT
1 AAACCCT
6348 AAACCCT
1 AAACCCT
6355 AAACCCT
1 AAACCCT
6362 AAACCCT
1 AAACCCT
6369 AAACCCT
1 AAACCCT
6376 AAACCCT
1 AAACCCT
6383 AAACCCT
1 AAACCCT
6390 AAACCCT
1 AAACCCT
6397 AAACCCT
1 AAACCCT
6404 AAACCCT
1 AAACCCT
6411 AAACCCT
1 AAACCCT
6418 AAACCCT
1 AAACCCT
6425 AAACCCT
1 AAACCCT
6432 AAACCCT
1 AAACCCT
6439 AAACCCT
1 AAACCCT
6446 AAACCCT
1 AAACCCT
6453 AAACCCT
1 AAACCCT
6460 AAACCCT
1 AAACCCT
6467 AAACCCT
1 AAACCCT
6474 AAACCCT
1 AAACCCT
6481 AAAACCCT
1 -AAACCCT
6489 AAACCCT
1 AAACCCT
6496 AAACCCT
1 AAACCCT
6503 AAACCCT
1 AAACCCT
6510 AAACCCT
1 AAACCCT
6517 AAACCCT
1 AAACCCT
6524 AAACCCT
1 AAACCCT
6531 AAACCCT
1 AAACCCT
6538 AAACCCT
1 AAACCCT
6545 AAACCCT
1 AAACCCT
6552 AAACCCT
1 AAACCCT
6559 AAACCCT
1 AAACCCT
6566 AAACCCT
1 AAACCCT
6573 AAA-CCT
1 AAACCCT
6579 AAACCCT
1 AAACCCT
6586 AAACCCT
1 AAACCCT
6593 AAACCCT
1 AAACCCT
6600 AAACCCT
1 AAACCCT
6607 AAACCCT
1 AAACCCT
6614 AAACCCCT
1 AAA-CCCT
6622 AAACCCT
1 AAACCCT
6629 AAACCCT
1 AAACCCT
6636 AAACCCT
1 AAACCCT
6643 AAACCCT
1 AAACCCT
6650 AAACCCT
1 AAACCCT
6657 AAACCCT
1 AAACCCT
6664 AAACCCT
1 AAACCCT
6671 AAACCCT
1 AAACCCT
6678 AAA-CCT
1 AAACCCT
6684 AAACCCT
1 AAACCCT
6691 AAAACCCT
1 -AAACCCT
6699 AAACCCCT
1 AAA-CCCT
6707 AAAACCCT
1 -AAACCCT
6715 AAACCCT
1 AAACCCT
6722 AAACCCT
1 AAACCCT
6729 AAACCCT
1 AAACCCT
6736 AAACCCT
1 AAACCCT
6743 AAACCCT
1 AAACCCT
6750 AAACCCT
1 AAACCCT
6757 AAACCCT
1 AAACCCT
6764 AAACCCT
1 AAACCCT
6771 AAACCCT
1 AAACCCT
6778 AAACCCT
1 AAACCCT
6785 AAACCCT
1 AAACCCT
6792 AAACCCT
1 AAACCCT
6799 AAACCCT
1 AAACCCT
6806 AAACCCT
1 AAACCCT
6813 AAACCCT
1 AAACCCT
6820 AAACCCT
1 AAACCCT
6827 AAACCCT
1 AAACCCT
6834 AAACCCT
1 AAACCCT
6841 AAACCCT
1 AAACCCT
6848 AAACCCT
1 AAACCCT
6855 AAACCCT
1 AAACCCT
6862 AAACCCT
1 AAACCCT
6869 AAACCCT
1 AAACCCT
6876 AAACCCT
1 AAACCCT
6883 AAACCCT
1 AAACCCT
6890 AAACCCT
1 AAACCCT
6897 AAACCCT
1 AAACCCT
6904 AAACCCT
1 AAACCCT
6911 AAACCCT
1 AAACCCT
6918 AAACCCT
1 AAACCCT
6925 AAACCCT
1 AAACCCT
6932 AAACCCT
1 AAACCCT
6939 AAACCCT
1 AAACCCT
6946 AAACCCT
1 AAACCCT
6953 AAACCCT
1 AAACCCT
6960 AAACCCT
1 AAACCCT
6967 AAACCCT
1 AAACCCT
6974 AAACCCT
1 AAACCCT
6981 AAACCCT
1 AAACCCT
6988 AAACCCT
1 AAACCCT
6995 AAACCCT
1 AAACCCT
7002 AAACCCT
1 AAACCCT
7009 AAACCCT
1 AAACCCT
7016 AAACCCT
1 AAACCCT
7023 AAACCCT
1 AAACCCT
7030 AAACCCT
1 AAACCCT
7037 AAACCCT
1 AAACCCT
7044 AAACCCT
1 AAACCCT
7051 AAACCCT
1 AAACCCT
7058 AAACCCT
1 AAACCCT
7065 AAACCCT
1 AAACCCT
7072 AAACCCT
1 AAACCCT
7079 AAACCCT
1 AAACCCT
7086 AAACCCT
1 AAACCCT
7093 AAACCCT
1 AAACCCT
7100 AAACCCT
1 AAACCCT
7107 AAACCCT
1 AAACCCT
7114 AAACCCT
1 AAACCCT
7121 AAACCCT
1 AAACCCT
7128 AAACCCT
1 AAACCCT
7135 AAACCCT
1 AAACCCT
7142 AAACCCT
1 AAACCCT
7149 AAACCCT
1 AAACCCT
7156 AAACCCT
1 AAACCCT
7163 AAACCCT
1 AAACCCT
7170 AAACCCT
1 AAACCCT
7177 AAACCCT
1 AAACCCT
7184 AAACCCT
1 AAACCCT
7191 AAACCCT
1 AAACCCT
7198 AAACCCT
1 AAACCCT
7205 AAACCCT
1 AAACCCT
7212 AAACCCT
1 AAACCCT
7219 AAACCCT
1 AAACCCT
7226 AAACCCT
1 AAACCCT
7233 AAACCCT
1 AAACCCT
7240 AAACCCT
1 AAACCCT
7247 AAACCCT
1 AAACCCT
7254 AAACCCT
1 AAACCCT
7261 AAACCCT
1 AAACCCT
7268 AAACCCT
1 AAACCCT
7275 AAACCCT
1 AAACCCT
7282 AAACCCT
1 AAACCCT
7289 AAACCCT
1 AAACCCT
7296 AAACCCT
1 AAACCCT
7303 AAA-CCT
1 AAACCCT
7309 AAACCCT
1 AAACCCT
7316 AAACCCT
1 AAACCCT
7323 AAACCCT
1 AAACCCT
7330 AAACCCT
1 AAACCCT
7337 AAACCCT
1 AAACCCT
7344 AAACCCT
1 AAACCCT
7351 AAACCCT
1 AAACCCT
7358 AAACCCT
1 AAACCCT
7365 AAACCCT
1 AAACCCT
7372 AAACCCT
1 AAACCCT
7379 AAACCCT
1 AAACCCT
7386 AAACCCT
1 AAACCCT
7393 AAACCCT
1 AAACCCT
7400 AAACCCT
1 AAACCCT
7407 AAACCCT
1 AAACCCT
7414 AAACCCT
1 AAACCCT
7421 AAACCCT
1 AAACCCT
7428 AAACCCT
1 AAACCCT
7435 AAACCCT
1 AAACCCT
7442 AAACCCT
1 AAACCCT
7449 AAACCCT
1 AAACCCT
7456 AAACCCT
1 AAACCCT
7463 AAACCCT
1 AAACCCT
7470 AAACCCT
1 AAACCCT
7477 AAACCCT
1 AAACCCT
7484 AAACCCT
1 AAACCCT
7491 AAACCCT
1 AAACCCT
7498 AAACCCT
1 AAACCCT
7505 AAACCCT
1 AAACCCT
7512 AAACCCT
1 AAACCCT
7519 AAACCCT
1 AAACCCT
7526 AAACCCT
1 AAACCCT
7533 AAACCCT
1 AAACCCT
7540 AAACCCT
1 AAACCCT
7547 AAACCCT
1 AAACCCT
7554 AAACCCT
1 AAACCCT
7561 AAACCCT
1 AAACCCT
7568 AAACCCT
1 AAACCCT
7575 AAACCCT
1 AAACCCT
7582 AAACCCT
1 AAACCCT
7589 AAACCCT
1 AAACCCT
7596 AAACCCT
1 AAACCCT
7603 AAACCCT
1 AAACCCT
7610 AAACCCT
1 AAACCCT
7617 AAACCCT
1 AAACCCT
7624 AAACCCT
1 AAACCCT
7631 AAACCCT
1 AAACCCT
7638 AAACCCT
1 AAACCCT
7645 AAACCCT
1 AAACCCT
7652 AAACCCT
1 AAACCCT
7659 AAACCCT
1 AAACCCT
7666 AAACCCT
1 AAACCCT
7673 AAACCCT
1 AAACCCT
7680 AAACCCT
1 AAACCCT
7687 AAACCCT
1 AAACCCT
7694 AAACCCT
1 AAACCCT
7701 AAACCCT
1 AAACCCT
7708 AAACCCT
1 AAACCCT
7715 AAACCCT
1 AAACCCT
7722 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
7757 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
7806 AAACCCT
1 AAACCCT
7813 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
7890 AAACCCT
1 AAACCCT
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1 AAACCCT
7904 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
7995 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
8401 AAACCCT
1 AAACCCT
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1 AAACCCT
8415 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
8590 AAACCCT
1 AAACCCT
8597 AAACCCT
1 AAACCCT
8604 AAACCCT
1 AAACCCT
8611 AAACCCT
1 AAACCCT
8618 AAACCCT
1 AAACCCT
8625 AAACCCT
1 AAACCCT
8632 AAACCCT
1 AAACCCT
8639 AAACCCT
1 AAACCCT
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1 AAACCCT
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1 AAACCCT
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1 AAACCCT
8667 AAACCCT
1 AAACCCT
8674 AAACCCT
1 AAACCCT
8681 AAACCCT
1 AAACCCT
8688 AAACCCT
1 AAACCCT
8695 AAACCCT
1 AAACCCT
8702 AAACCCT
1 AAACCCT
8709 AAACCCT
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*
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* *
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*
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*
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*
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* *
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*
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*
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*
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*
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*
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*
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*
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*
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*
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*
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*
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1 AAACCCT
*
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1 AAACCCT
*
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1 AAACCCT
*
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1 AAACCCT
*
21756 AAACCCA
1 AAACCCT
*
21763 AAACCCC
1 AAACCCT
*
21770 AAACCCC
1 AAACCCT
*
21777 AAACCCC
1 AAACCCT
*
21784 AAACCCC
1 AAACCCT
*
21791 AAACCCC
1 AAACCCT
*
21798 AAACCCCA
1 AAA-CCCT
*
21806 AAACCCC
1 AAACCCT
*
21813 AAACCCC
1 AAACCCT
*
21820 AAACCCC
1 AAACCCT
*
21827 AAACCCC
1 AAACCCT
*
21834 AAACCCC
1 AAACCCT
*
21841 AAACCCC
1 AAACCCT
21848 AAACCC-
1 AAACCCT
*
21854 AAACCCC
1 AAACCCT
*
21861 AAACCCC
1 AAACCCT
*
21868 AAACCCCA
1 AAA-CCCT
21876 AAACCC-
1 AAACCCT
21882 AAACCC-
1 AAACCCT
*
21888 AAACCCC
1 AAACCCT
21895 AAACCC-
1 AAACCCT
*
21901 AAACCCCAA
1 AAA-CCC-T
*
21910 AAACCCC
1 AAACCCT
*
21917 AAACCCCA
1 AAA-CCCT
*
21925 AAACCCC
1 AAACCCT
*
21932 AAACCCC
1 AAACCCT
*
21939 AAACCCC
1 AAACCCT
*
21946 AAACCCC
1 AAACCCT
*
21953 AAACCCC
1 AAACCCT
*
21960 AAACCCA
1 AAACCCT
*
21967 AAACCCC
1 AAACCCT
*
21974 AAACCCC
1 AAACCCT
21981 AAACCC-
1 AAACCCT
* *
21987 CAACCCC
1 AAACCCT
*
21994 AAACCCAA
1 AAACCC-T
22002 AAACCC-
1 AAACCCT
*
22008 AAACCCC
1 AAACCCT
*
22015 AAACCCC
1 AAACCCT
*
22022 AAACCCCA
1 AAA-CCCT
*
22030 AAACCCC
1 AAACCCT
*
22037 AAACCCC
1 AAACCCT
*
22044 AAACCCC
1 AAACCCT
22051 AAACCC-
1 AAACCCT
*
22057 AAACCCC
1 AAACCCT
*
22064 AAACCCC
1 AAACCCT
*
22071 AAACCCC
1 AAACCCT
*
22078 AAACCCC
1 AAACCCT
22085 AAACCC-
1 AAACCCT
*
22091 CAACCC-
1 AAACCCT
*
22097 AAACCCC
1 AAACCCT
*
22104 AAACCCC
1 AAACCCT
*
22111 AAACCCC
1 AAACCCT
*
22118 AAACCCC
1 AAACCCT
*
22125 AAACCCCA
1 AAA-CCCT
*
22133 AAACCCC
1 AAACCCT
*
22140 AAACCCC
1 AAACCCT
*
22147 AAACCCC
1 AAACCCT
*
22154 AAACCCC
1 AAACCCT
*
22161 AAACCCC
1 AAACCCT
*
22168 AAACCCC
1 AAACCCT
22175 AAACCC-
1 AAACCCT
22181 AAACCC-
1 AAACCCT
*
22187 AAACCCCA
1 AAA-CCCT
*
22195 AAACCCC
1 AAACCCT
22202 AAACCCT
1 AAACCCT
22209 AAACCCT
1 AAACCCT
22216 AAACCCT
1 AAACCCT
22223 AAACCCT
1 AAACCCT
22230 AAACCCT
1 AAACCCT
22237 AAACCCT
1 AAACCCT
22244 AAACCCT
1 AAACCCT
22251 AAACCCT
1 AAACCCT
22258 AAACCCT
1 AAACCCT
22265 AAACCCT
1 AAACCCT
22272 AAAACCCT
1 -AAACCCT
22280 -AACCCT
1 AAACCCT
22286 AAACCCT
1 AAACCCT
22293 AAACCCT
1 AAACCCT
22300 AAACCCT
1 AAACCCT
22307 AAACCCT
1 AAACCCT
22314 AAAAACCCT
1 --AAACCCT
22323 AAA-CCT
1 AAACCCT
22329 AAAACCCT
1 -AAACCCT
22337 AAACCCT
1 AAACCCT
22344 AAACCCT
1 AAACCCT
22351 AAACCCT
1 AAACCCT
22358 AAACCCT
1 AAACCCT
22365 AAACCCT
1 AAACCCT
22372 -AACCCT
1 AAACCCT
22378 AAAACCCT
1 -AAACCCT
22386 -AACCCT
1 AAACCCT
22392 AAACCCT
1 AAACCCT
22399 AAACCCT
1 AAACCCT
22406 AAACCCT
1 AAACCCT
22413 AAACCCT
1 AAACCCT
22420 AAACCCT
1 AAACCCT
22427 AAACCCT
1 AAACCCT
22434 AAACCCT
1 AAACCCT
22441 AAACCCT
1 AAACCCT
22448 -AACCCT
1 AAACCCT
22454 AAACCCT
1 AAACCCT
22461 AAACCCT
1 AAACCCT
22468 AAACCCT
1 AAACCCT
22475 AAACCCCT
1 AAA-CCCT
22483 AAAACCCT
1 -AAACCCT
22491 AAACCCT
1 AAACCCT
22498 AAACCCT
1 AAACCCT
22505 AAACCCT
1 AAACCCT
22512 AAACCCT
1 AAACCCT
22519 AAACCCT
1 AAACCCT
22526 AAACCCT
1 AAACCCT
22533 AAAACCCT
1 -AAACCCT
22541 AAACCCT
1 AAACCCT
22548 AAACCCT
1 AAACCCT
22555 AAACCCT
1 AAACCCT
22562 AAACCCT
1 AAACCCT
22569 AAACCCT
1 AAACCCT
22576 AAACCCT
1 AAACCCT
22583 AAACCCT
1 AAACCCT
22590 AAACCCT
1 AAACCCT
22597 AAACCCT
1 AAACCCT
22604 AAACCCT
1 AAACCCT
22611 AAA-CCT
1 AAACCCT
22617 AAACCCT
1 AAACCCT
22624 AAACCCT
1 AAACCCT
22631 AAAACCCT
1 -AAACCCT
22639 AAACCCT
1 AAACCCT
22646 AAACCCT
1 AAACCCT
22653 AAACCCT
1 AAACCCT
*
22660 AAAACCT
1 AAACCCT
22667 AAACCCT
1 AAACCCT
22674 AAACCCT
1 AAACCCT
22681 AAACCCT
1 AAACCCT
22688 AAACCCT
1 AAACCCT
22695 AAACCCT
1 AAACCCT
22702 AAAACCCT
1 -AAACCCT
22710 AAACCCT
1 AAACCCT
22717 AAACCCT
1 AAACCCT
22724 AAACCCT
1 AAACCCT
22731 -AACCCT
1 AAACCCT
22737 AAACCCT
1 AAACCCT
22744 AAACCCT
1 AAACCCT
22751 AAACCCT
1 AAACCCT
22758 AAACCCT
1 AAACCCT
22765 -AACCCT
1 AAACCCT
22771 AAACCCT
1 AAACCCT
22778 AAACCCT
1 AAACCCT
22785 AAACCCT
1 AAACCCT
22792 AAACCCT
1 AAACCCT
22799 AAACCCT
1 AAACCCT
22806 AAACCC-
1 AAACCCT
22812 AAACCCT
1 AAACCCT
22819 AAACCCT
1 AAACCCT
22826 AAACCCCT
1 AAA-CCCT
22834 AAACCCT
1 AAACCCT
22841 AAAACCCT
1 -AAACCCT
22849 AAACCCT
1 AAACCCT
22856 AAACCCT
1 AAACCCT
22863 AAAACCCT
1 -AAACCCT
22871 AAACCCT
1 AAACCCT
22878 -AACCCT
1 AAACCCT
22884 AAACCCT
1 AAACCCT
22891 AAACCCT
1 AAACCCT
22898 AAACCCT
1 AAACCCT
22905 AAACCCT
1 AAACCCT
22912 AAACCCT
1 AAACCCT
22919 AAACCCT
1 AAACCCT
22926 AAACCCT
1 AAACCCT
22933 AAACCCT
1 AAACCCT
22940 AAACCCT
1 AAACCCT
22947 AAA-CCT
1 AAACCCT
22953 AAACCCT
1 AAACCCT
22960 AAACCCT
1 AAACCCT
22967 AAACCCT
1 AAACCCT
22974 AAACCCT
1 AAACCCT
22981 AAAACCCT
1 -AAACCCT
22989 AAACCCT
1 AAACCCT
22996 AAACCCT
1 AAACCCT
23003 AAA-CCT
1 AAACCCT
23009 AAAACCCT
1 -AAACCCT
23017 AAACCCT
1 AAACCCT
23024 AAACCCT
1 AAACCCT
23031 AAACCCT
1 AAACCCT
23038 AAACCCT
1 AAACCCT
23045 AAACCCT
1 AAACCCT
23052 AAACCC-
1 AAACCCT
23058 AAACCCT
1 AAACCCT
23065 AAAACCCT
1 -AAACCCT
23073 AAACCCT
1 AAACCCT
23080 AAAACCCT
1 -AAACCCT
23088 AAACCCT
1 AAACCCT
23095 AAACCCT
1 AAACCCT
23102 AAACCCT
1 AAACCCT
23109 AAACCCT
1 AAACCCT
23116 AAACCCT
1 AAACCCT
23123 AAACCCT
1 AAACCCT
23130 -AACCCT
1 AAACCCT
23136 AAACCCT
1 AAACCCT
23143 AAACCCT
1 AAACCCT
23150 AAACCCT
1 AAACCCT
23157 AAACCCT
1 AAACCCT
23164 AAACCCT
1 AAACCCT
23171 AAACCCT
1 AAACCCT
23178 AAACCCT
1 AAACCCT
23185 AAACCCT
1 AAACCCT
23192 AAA-CCT
1 AAACCCT
23198 AAA-CCT
1 AAACCCT
23204 AAACCCT
1 AAACCCT
23211 AAACCCT
1 AAACCCT
23218 AAACCCT
1 AAACCCT
23225 AAACCCT
1 AAACCCT
*
23232 AAACCCAA
1 AAACCC-T
*
23240 AAACCCC
1 AAACCCT
*
23247 AAACCCC
1 AAACCCT
*
23254 AAACCCA
1 AAACCCT
23261 AAACCC-
1 AAACCCT
*
23267 AAACCCC
1 AAACCCT
*
23274 AAACCCC
1 AAACCCT
*
23281 AAACCCC
1 AAACCCT
23288 AAACCC-
1 AAACCCT
23294 AAACCC-
1 AAACCCT
*
23300 AAACCCC
1 AAACCCT
*
23307 AAACCCC
1 AAACCCT
*
23314 AAACCCCC
1 AAA-CCCT
*
23322 AAACCCC
1 AAACCCT
*
23329 AAACCCCA
1 AAA-CCCT
23337 AAACCC-
1 AAACCCT
23343 AAACCC-
1 AAACCCT
*
23349 AAACCCC
1 AAACCCT
*
23356 AAACCCC
1 AAACCCT
23363 AAA-CC-
1 AAACCCT
23368 AAACCC-
1 AAACCCT
*
23374 AAACCCC
1 AAACCCT
*
23381 AAACCCC
1 AAACCCT
23388 AAACCC-
1 AAACCCT
* *
23394 -CACCCC
1 AAACCCT
23400 AAACCC-
1 AAACCCT
* *
23406 CAACCCA
1 AAACCCT
*
23413 AAACCCC
1 AAACCCT
*
23420 AAACCCC
1 AAACCCT
*
23427 AAACCCC
1 AAACCCT
*
23434 AAACCCC
1 AAACCCT
*
23441 AAACCCC
1 AAACCCT
*
23448 AAACCCC
1 AAACCCT
*
23455 AAACCCC
1 AAACCCT
*
23462 AAACCCC
1 AAACCCT
23469 AAACCC-
1 AAACCCT
* *
23475 CAACCCC
1 AAACCCT
23482 AAACCC-
1 AAACCCT
*
23488 -AACCCC
1 AAACCCT
*
23494 AAACCCC
1 AAACCCT
*
23501 AAACCCC
1 AAACCCT
*
23508 AAACCCC
1 AAACCCT
23515 AAACCC-
1 AAACCCT
*
23521 AAACCCC
1 AAACCCT
23528 AAACCC-
1 AAACCCT
*
23534 AAACCCCA
1 AAA-CCCT
*
23542 AAACCCC
1 AAACCCT
*
23549 AAACCCC
1 AAACCCT
*
23556 AAACCCCA
1 AAA-CCCT
*
23564 AAACCCC
1 AAACCCT
*
23571 AAACCCC
1 AAACCCT
*
23578 AAACCCC
1 AAACCCT
23585 AAACCC-
1 AAACCCT
*
23591 AAACCCC
1 AAACCCT
*
23598 AAACCCC
1 AAACCCT
23605 AAACCC-
1 AAACCCT
23611 AAACCC
1 AAACCC
23617 CAAAAACCCC
Statistics
Matches: 23192, Mismatches: 87, Indels: 661
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.00
5 27 0.00
6 663 0.03
7 21271 0.92
8 987 0.04
9 196 0.01
10 44 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:23657 original size:7 final size:7
Alignment explanation
Indices: 23241--24045 Score: 531
Period size: 7 Copynumber: 118.6 Consensus size: 7
23231 TAAACCCAAA
*
23241 AACCCCA
1 AACCCCG
23248 AACCCC-
1 AACCCCG
* *
23254 AAACCCA
1 AACCCCG
* *
23261 AAACCCA
1 AACCCCG
*
23268 AACCCCA
1 AACCCCG
*
23275 AACCCCA
1 AACCCCG
23282 AACCCC-
1 AACCCCG
*
23288 AAACCC-
1 AACCCCG
* *
23294 AAACCCA
1 AACCCCG
*
23301 AACCCCA
1 AACCCCG
*
23308 AACCCCA
1 AACCCCG
*
23315 AACCCCCA
1 AA-CCCCG
*
23323 AACCCCA
1 AACCCCG
*
23330 AACCCCA
1 AACCCCG
*
23337 AAACCC-
1 AACCCCG
* *
23343 AAACCCA
1 AACCCCG
*
23350 AACCCCA
1 AACCCCG
23357 AACCCC-
1 AACCCCG
*
23363 AA-ACC-
1 AACCCCG
* *
23368 AAACCCA
1 AACCCCG
*
23375 AACCCCA
1 AACCCCG
*
23382 AACCCCA
1 AACCCCG
23389 AACCCC-
1 AACCCCG
*
23395 -ACCCCA
1 AACCCCG
23401 AACCCC-
1 AACCCCG
**
23407 AACCCAA
1 AACCCCG
*
23414 AACCCCA
1 AACCCCG
*
23421 AACCCCA
1 AACCCCG
*
23428 AACCCCA
1 AACCCCG
*
23435 AACCCCA
1 AACCCCG
*
23442 AACCCCA
1 AACCCCG
*
23449 AACCCCA
1 AACCCCG
*
23456 AACCCCA
1 AACCCCG
*
23463 AACCCCA
1 AACCCCG
23470 AACCCC-
1 AACCCCG
23476 AACCCC-
1 AACCCCG
*
23482 AAACCC-
1 AACCCCG
*
23488 AACCCCA
1 AACCCCG
*
23495 AACCCCA
1 AACCCCG
*
23502 AACCCCA
1 AACCCCG
23509 AACCCC-
1 AACCCCG
* *
23515 AAACCCA
1 AACCCCG
23522 AACCCC-
1 AACCCCG
* *
23528 AAACCCA
1 AACCCCG
*
23535 AACCCCAA
1 AACCCC-G
*
23543 AACCCCA
1 AACCCCG
*
23550 AACCCCA
1 AACCCCG
*
23557 AACCCCAA
1 AACCCC-G
*
23565 AACCCCA
1 AACCCCG
*
23572 AACCCCA
1 AACCCCG
23579 AACCCC-
1 AACCCCG
* *
23585 AAACCCA
1 AACCCCG
*
23592 AACCCCA
1 AACCCCG
23599 AACCCC-
1 AACCCCG
* *
23605 AAACCCA
1 AACCCCG
*
23612 AACCCCAAA
1 AACCCC--G
23621 AACCCC-
1 AACCCCG
*
23627 AACCCCA
1 AACCCCG
23634 AACCCCG
1 AACCCCG
*
23641 AA-CCCA
1 AACCCCG
23647 AACCCCG
1 AACCCCG
23654 AACCCCG
1 AACCCCG
23661 -ACCCCG
1 AACCCCG
23667 AA-CCCG
1 AACCCCG
*
23673 AAACCCG
1 AACCCCG
23680 AA-CCCG
1 AACCCCG
23686 AA-CCCG
1 AACCCCG
23692 AACCCCG
1 AACCCCG
23699 AA-CCCG
1 AACCCCG
23705 AA-CCCG
1 AACCCCG
23711 AA-CCCG
1 AACCCCG
23717 AACCCCG
1 AACCCCG
23724 AACCCCG
1 AACCCCG
23731 -ACCCCG
1 AACCCCG
23737 AACCCCG
1 AACCCCG
23744 AACCCCG
1 AACCCCG
23751 AACCCCG
1 AACCCCG
23758 AACCCCG
1 AACCCCG
23765 AACCCCG
1 AACCCCG
23772 AA-CCCG
1 AACCCCG
23778 AACCCCG
1 AACCCCG
23785 AA-CCCG
1 AACCCCG
23791 AACCCCG
1 AACCCCG
23798 AACCCCG
1 AACCCCG
23805 AACCCCG
1 AACCCCG
23812 AACCCCG
1 AACCCCG
23819 AAACCCCG
1 -AACCCCG
*
23827 AGCCCCG
1 AACCCCG
23834 AAGCCCCG
1 AA-CCCCG
*
23842 AGCCCCG
1 AACCCCG
*
23849 AGCCCCG
1 AACCCCG
*
23856 AGCCCCG
1 AACCCCG
*
23863 AGCCCCG
1 AACCCCG
*
23870 AGCCCCG
1 AACCCCG
*
23877 -AGCCCG
1 AACCCCG
*
23883 AGCCCCG
1 AACCCCG
*
23890 AGCCCCG
1 AACCCCG
*
23897 AGCCCC-
1 AACCCCG
*
23903 AGCCCCG
1 AACCCCG
*
23910 AGCCCCG
1 AACCCCG
*
23917 AGCCCCG
1 AACCCCG
*
23924 AGCCCCG
1 AACCCCG
*
23931 AGCCCCG
1 AACCCCG
*
23938 AGCCCCG
1 AACCCCG
*
23945 AGCCCCG
1 AACCCCG
*
23952 -AGCCCG
1 AACCCCG
*
23958 AGCCCCG
1 AACCCCG
*
23965 AGCCCCG
1 AACCCCG
*
23972 AGCCCCG
1 AACCCCG
*
23979 AGCCCCG
1 AACCCCG
*
23986 AGCCCCG
1 AACCCCG
*
23993 AGCCCCG
1 AACCCCG
*
24000 AGCCCCG
1 AACCCCG
*
24007 AGCCCCG
1 AACCCCG
*
24014 AGCCCCG
1 AACCCCG
*
24021 AGCCCCG
1 AACCCCG
*
24028 AGCCCCG
1 AACCCCG
*
24035 AGCCCCG
1 AACCCCG
24042 AACC
1 AACC
24046 TACTTACACT
Statistics
Matches: 730, Mismatches: 36, Indels: 64
0.88 0.04 0.08
Matches are distributed among these distances:
5 9 0.01
6 152 0.21
7 528 0.72
8 34 0.05
9 7 0.01
ACGTcount: A:0.33, C:0.56, G:0.11, T:0.00
Consensus pattern (7 bp):
AACCCCG
Found at i:37007 original size:8 final size:7
Alignment explanation
Indices: 36989--37026 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
36979 GACCCTAAAA
*
36989 CCCCGAT
1 CCCCGAG
36996 CCCCGAG
1 CCCCGAG
37003 CCCCCGAG
1 -CCCCGAG
37011 CCCCGAG
1 CCCCGAG
37018 CCCCGAG
1 CCCCGAG
37025 CC
1 CC
37027 TCGAACCTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.13, C:0.61, G:0.24, T:0.03
Consensus pattern (7 bp):
CCCCGAG
Found at i:37009 original size:15 final size:15
Alignment explanation
Indices: 36989--37026 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
36979 GACCCTAAAA
*
36989 CCCCGATCCCCGAGC
1 CCCCGAGCCCCGAGC
37004 CCCCGAGCCCCGAG-
1 CCCCGAGCCCCGAGC
37018 CCCCGAGCC
1 CCCCGAGCC
37027 TCGAACCTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.13, C:0.61, G:0.24, T:0.03
Consensus pattern (15 bp):
CCCCGAGCCCCGAGC
Found at i:37426 original size:13 final size:13
Alignment explanation
Indices: 37405--37436 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
37395 TATAGCTCTT
37405 TTTTAGGTTGTAAA
1 TTTT-GGTTGTAAA
37419 TTTTGGTTGTAAA
1 TTTTGGTTGTAAA
37432 TTTTG
1 TTTTG
37437 ATTTAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (13 bp):
TTTTGGTTGTAAA
Found at i:41778 original size:35 final size:36
Alignment explanation
Indices: 41688--41851 Score: 182
Period size: 35 Copynumber: 4.8 Consensus size: 36
41678 TTAGTCGTGT
41688 GAGAAG-CTGAAGTATGCCTTGAAGGCT--GTGTCT-
1 GAGAAGAC-GAAGTATGCCTTGAAGGCTAAGTGTCTC
* *
41721 AAGAAAAC-AAGTATGCCTTGAAGGCTAAGTGTCT-
1 GAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCTC
* * *
41755 TAGAAGACGAAGCATGCCTTGAAGGCTAAGTAT-TC
1 GAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCTC
* * * *
41790 GAGAAGATGAAGTGTGCCTTAAAGGCTAAGTG-CTG
1 GAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCTC
41825 GAGAAGACGAAGTATGCCTTGAAGGCT
1 GAGAAGACGAAGTATGCCTTGAAGGCT
41852 GTGTCTAAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
32 18 0.17
33 4 0.04
34 14 0.13
35 73 0.67
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (36 bp):
GAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCTC
Found at i:48248 original size:62 final size:62
Alignment explanation
Indices: 48151--48274 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
48141 CCTTGCGCTG
*
48151 AGTTTTGCTTGACCTCGTATTTAAATGAGATGCATAAGCATTATTGTCATCCCCTTCAACAA
1 AGTTTTGCTTGACCTCGTATCTAAATGAGATGCATAAGCATTATTGTCATCCCCTTCAACAA
48213 AGTTTTGCTTGACCTCGTATCTAAATGAGATGCATAAGCATTATTGTCATCCCCTTCAACAA
1 AGTTTTGCTTGACCTCGTATCTAAATGAGATGCATAAGCATTATTGTCATCCCCTTCAACAA
48275 CCCCCCTCCC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (62 bp):
AGTTTTGCTTGACCTCGTATCTAAATGAGATGCATAAGCATTATTGTCATCCCCTTCAACAA
Found at i:51141 original size:14 final size:14
Alignment explanation
Indices: 51122--51149 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51112 TCTCAAGACA
51122 AAAGATCATTTGTC
1 AAAGATCATTTGTC
51136 AAAGATCATTTGTC
1 AAAGATCATTTGTC
51150 TCGAGACCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
AAAGATCATTTGTC
Found at i:60814 original size:4 final size:4
Alignment explanation
Indices: 60807--60858 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
60797 ACACACACAC
* * * * * *
60807 ACAT ACAT ACAT ACAT ACAT ACAT GCAG ACAT TCAG ACAG ACGT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
60855 ACAT
1 ACAT
60859 TTTTGTCCAC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (4 bp):
ACAT
Found at i:66265 original size:10 final size:10
Alignment explanation
Indices: 66252--66280 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
66242 TACGCAATTG
66252 TTTTTTTTTA
1 TTTTTTTTTA
66262 -TTTTTTTTA
1 TTTTTTTTTA
66271 TTTTTTTTTA
1 TTTTTTTTTA
66281 AATTGAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:66267 original size:9 final size:9
Alignment explanation
Indices: 66253--66278 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
66243 ACGCAATTGT
66253 TTTTTTTTA
1 TTTTTTTTA
66262 TTTTTTTTA
1 TTTTTTTTA
66271 TTTTTTTT
1 TTTTTTTT
66279 TAAATTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:75040 original size:20 final size:21
Alignment explanation
Indices: 75017--75083 Score: 93
Period size: 20 Copynumber: 3.2 Consensus size: 21
75007 GTTTATGGTT
75017 TTTTTGCTGTT-TTTTTATTA
1 TTTTTGCTGTTATTTTTATTA
75037 TTTTTGCTGTTATTTTTATT-
1 TTTTTGCTGTTATTTTTATTA
* *
75057 GTTTTGATGTTATTTTTATGTA
1 TTTTTGCTGTTATTTTTAT-TA
75079 TTTTT
1 TTTTT
75084 TTACTATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
20 28 0.68
21 9 0.22
22 4 0.10
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.73
Consensus pattern (21 bp):
TTTTTGCTGTTATTTTTATTA
Found at i:75237 original size:17 final size:18
Alignment explanation
Indices: 75200--75246 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
75190 TTTTAATGTA
*
75200 TTTTAA-ATTTGTTTATT
1 TTTTAATATTTGTTTATG
75217 TTTTAATATTTGTTT-TG
1 TTTTAATATTTGTTTATG
*
75234 TTTTAATGTTTGT
1 TTTTAATATTTGT
75247 GAGTGTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.70
Consensus pattern (18 bp):
TTTTAATATTTGTTTATG
Found at i:78942 original size:19 final size:19
Alignment explanation
Indices: 78900--78968 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 19
78890 ATTACAAAAT
78900 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTT-AAA
*
78920 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTTAAA
78939 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTT-TAAA
78958 AATTTCAAAAT
1 AA-TTCAAAAT
78969 TTATATCTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.09
19 17 0.38
20 24 0.53
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTCAAAATAATTTTAAA
Found at i:84955 original size:90 final size:90
Alignment explanation
Indices: 84802--84976 Score: 350
Period size: 90 Copynumber: 1.9 Consensus size: 90
84792 TCTTTCCTTG
84802 TTGAGACTTGTATCAACAAAGATAAAATCATTAATATATATACATATAACAATGGTAAAATGATA
1 TTGAGACTTGTATCAACAAAGATAAAATCATTAATATATATACATATAACAATGGTAAAATGATA
84867 ACAAGAGATAAAAAGGGGGGAAATT
66 ACAAGAGATAAAAAGGGGGGAAATT
84892 TTGAGACTTGTATCAACAAAGATAAAATCATTAATATATATACATATAACAATGGTAAAATGATA
1 TTGAGACTTGTATCAACAAAGATAAAATCATTAATATATATACATATAACAATGGTAAAATGATA
84957 ACAAGAGATAAAAAGGGGGG
66 ACAAGAGATAAAAAGGGGGG
84977 GAAAGGATGT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25
Consensus pattern (90 bp):
TTGAGACTTGTATCAACAAAGATAAAATCATTAATATATATACATATAACAATGGTAAAATGATA
ACAAGAGATAAAAAGGGGGGAAATT
Found at i:87545 original size:21 final size:21
Alignment explanation
Indices: 87521--87572 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
87511 CTGTTAAAAA
*
87521 TTAATTTTTATATATAATTAT-
1 TTAATTTTTATAT-TAATCATG
87542 TTAATTATTT-TATTAATCATG
1 TTAATT-TTTATATTAATCATG
87563 TTAATTTTTA
1 TTAATTTTTA
87573 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 9 0.33
21 15 0.56
22 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTAATTTTTATATTAATCATG
Found at i:98262 original size:20 final size:20
Alignment explanation
Indices: 98234--98276 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
98224 ATTTGGGATT
*
98234 TTTAGTGAT-TTTTTTAAAGA
1 TTTAGTGATGTTTTCTAAA-A
*
98254 TTTATTGATGTTTTCTAAAA
1 TTTAGTGATGTTTTCTAAAA
98274 TTT
1 TTT
98277 GTATGTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (20 bp):
TTTAGTGATGTTTTCTAAAA
Found at i:99933 original size:6 final size:6
Alignment explanation
Indices: 99919--99955 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
99909 CTCCTCTCCC
* *
99919 CCGCCT CCGCTT CCGCAT CCGCAT CCGCAT CCGCAT C
1 CCGCAT CCGCAT CCGCAT CCGCAT CCGCAT CCGCAT C
99956 GACGCCGCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.11, C:0.54, G:0.16, T:0.19
Consensus pattern (6 bp):
CCGCAT
Found at i:116050 original size:25 final size:25
Alignment explanation
Indices: 116022--116103 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
116012 AGAGTATATC
116022 ATTAGTACTTTTTGTTCTTTATCTG
1 ATTAGTACTTTTTGTTCTTTATCTG
* * ** * * *
116047 ATTATTAATTGGCTTTGTGGTGTATATC
1 ATTAGTACTT---TTTGTTCTTTATCTG
116075 ATTAGTACTTTTTGTTCTTTATCTG
1 ATTAGTACTTTTTGTTCTTTATCTG
116100 ATTA
1 ATTA
116104 TTAATTGGCT
Statistics
Matches: 40, Mismatches: 14, Indels: 6
0.67 0.23 0.10
Matches are distributed among these distances:
25 22 0.55
28 18 0.45
ACGTcount: A:0.20, C:0.10, G:0.15, T:0.56
Consensus pattern (25 bp):
ATTAGTACTTTTTGTTCTTTATCTG
Found at i:116063 original size:28 final size:28
Alignment explanation
Indices: 116032--116116 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
116022 ATTAGTACTT
116032 TTTGTTCTTTATCTGATTATTAATTGGC
1 TTTGTTCTTTATCTGATTATTAATTGGC
** * * * * *
116060 TTTGTGGTGTATATCATTAGTACTT---
1 TTTGTTCTTTATCTGATTATTAATTGGC
116085 TTTGTTCTTTATCTGATTATTAATTGGC
1 TTTGTTCTTTATCTGATTATTAATTGGC
116113 TTTG
1 TTTG
116117 GGGTTTCAGG
Statistics
Matches: 40, Mismatches: 14, Indels: 6
0.67 0.23 0.10
Matches are distributed among these distances:
25 18 0.45
28 22 0.55
ACGTcount: A:0.18, C:0.09, G:0.16, T:0.56
Consensus pattern (28 bp):
TTTGTTCTTTATCTGATTATTAATTGGC
Found at i:116083 original size:53 final size:53
Alignment explanation
Indices: 116015--116116 Score: 204
Period size: 53 Copynumber: 1.9 Consensus size: 53
116005 TGCTTGTAGA
116015 GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTGTGGT
1 GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTGTGGT
116068 GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTG
1 GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTG
116117 GGGTTTCAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.55
Consensus pattern (53 bp):
GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTGTGGT
Found at i:126469 original size:2 final size:2
Alignment explanation
Indices: 126462--126496 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
126452 GTAAACAAAG
*
126462 GA GA GA GA GA GC GA GA GA GA GA GA GA GA GA G- GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
126497 CGGGCGTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.46, C:0.03, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:129479 original size:15 final size:16
Alignment explanation
Indices: 129437--129480 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
129427 TTTTTTAATT
*
129437 TAAAAGTTTGTAAATTA
1 TAAAAGTTT-TAAATGA
*
129454 TAAAAGGTTTAAATGA
1 TAAAAGTTTTAAATGA
129470 -AAAAGTTTTAA
1 TAAAAGTTTTAA
129481 TTTTAAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.42
16 6 0.25
17 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (16 bp):
TAAAAGTTTTAAATGA
Found at i:129943 original size:24 final size:24
Alignment explanation
Indices: 129893--129943 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
129883 ATTTTAATAT
** *
129893 TTTTAATATTTTTTATATATTATA
1 TTTTAATATTTTTTATATAAAAAA
129917 TTTTAA-ATTTATTTATATAAAAAA
1 TTTTAATATTT-TTTATATAAAAAA
129941 TTT
1 TTT
129944 AATTCGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTAATATTTTTTATATAAAAAA
Found at i:131419 original size:7 final size:8
Alignment explanation
Indices: 131399--131429 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
131389 CAACAATTAA
131399 TAAAAATT
1 TAAAAATT
131407 TAAAAATT
1 TAAAAATT
131415 TAAAAAATT
1 T-AAAAATT
131424 TAAAAA
1 TAAAAA
131430 ATATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
TAAAAATT
Found at i:131420 original size:9 final size:9
Alignment explanation
Indices: 131400--131460 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
131390 AACAATTAAT
131400 AAAAATTT-
1 AAAAATTTA
131408 AAAAATTTA
1 AAAAATTTA
131417 AAAAATTTA
1 AAAAATTTA
*
131426 AAAAATATA
1 AAAAATTTA
* *
131435 AATAATTATT
1 AAAAATT-TA
* *
131445 TAAATTTTA
1 AAAAATTTA
131454 AAAAATT
1 AAAAATT
131461 AATTGTTAAC
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
8 8 0.20
9 28 0.68
10 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAAATTTA
Found at i:137506 original size:7 final size:8
Alignment explanation
Indices: 137486--137510 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
137476 ATATTATATG
137486 ATTTTTAA
1 ATTTTTAA
137494 ATTTTTAA
1 ATTTTTAA
137502 ATTTTTAA
1 ATTTTTAA
137510 A
1 A
137511 ATATATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTTTTAA
Found at i:138716 original size:12 final size:12
Alignment explanation
Indices: 138695--138729 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
138685 AGACAAGCCG
* *
138695 GTTCCGGTTCCT
1 GTTCCAGTTCCC
138707 GTTCCAGTTCCC
1 GTTCCAGTTCCC
138719 GTTCCAGTTCC
1 GTTCCAGTTCC
138730 GGTATTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (12 bp):
GTTCCAGTTCCC
Found at i:138722 original size:18 final size:18
Alignment explanation
Indices: 138695--138729 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
138685 AGACAAGCCG
* *
138695 GTTCCGGTTCCTGTTCCA
1 GTTCCCGTTCCAGTTCCA
138713 GTTCCCGTTCCAGTTCC
1 GTTCCCGTTCCAGTTCC
138730 GGTATTGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (18 bp):
GTTCCCGTTCCAGTTCCA
Found at i:143010 original size:18 final size:18
Alignment explanation
Indices: 142987--143034 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
142977 TGGTGCTGGT
142987 GATGATGCTGATGAAGAC
1 GATGATGCTGATGAAGAC
* ***
143005 GATGATGATGATGAATTT
1 GATGATGCTGATGAAGAC
143023 GATGATGCTGAT
1 GATGATGCTGAT
143035 TCAGGAGCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.31
Consensus pattern (18 bp):
GATGATGCTGATGAAGAC
Found at i:159433 original size:11 final size:10
Alignment explanation
Indices: 159385--159474 Score: 59
Period size: 10 Copynumber: 9.4 Consensus size: 10
159375 TGACATGCGA
159385 AAAAAATTAT
1 AAAAAATTAT
159395 -AAAAA--AT
1 AAAAAATTAT
*
159402 -AAAAATCAGT
1 AAAAAATTA-T
*
159412 -AAAAATCAT
1 AAAAAATTAT
159421 AAAAAATATAT
1 AAAAAAT-TAT
*
159432 AAAAAATTGT
1 AAAAAATTAT
**
159442 AAAATTTTAT
1 AAAAAATTAT
159452 -AAAAA-TAT
1 AAAAAATTAT
159460 AAAAAATTTAT
1 AAAAAA-TTAT
159471 AAAA
1 AAAA
159475 TACATAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
7 7 0.11
8 3 0.05
9 15 0.23
10 24 0.37
11 16 0.25
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:159434 original size:20 final size:20
Alignment explanation
Indices: 159411--159485 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
159401 TAAAAATCAG
*
159411 TAAAAATCATAAAAAATATA
1 TAAAAATCATAAAAAATTTA
** *
159431 TAAAAAATTGT-AAAATTTTA
1 T-AAAAATCATAAAAAATTTA
159451 TAAAAAT-ATAAAAAATTTA
1 TAAAAATCATAAAAAATTTA
159470 T-AAAATACATAAAAAA
1 TAAAAAT-CATAAAAAA
159486 AAGCCTTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
18 6 0.13
19 15 0.33
20 17 0.38
21 7 0.16
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (20 bp):
TAAAAATCATAAAAAATTTA
Found at i:159435 original size:19 final size:19
Alignment explanation
Indices: 159385--159485 Score: 61
Period size: 20 Copynumber: 5.3 Consensus size: 19
159375 TGACATGCGA
159385 AAAAAAT-TATAAAA-AAT
1 AAAAAATATATAAAATAAT
*
159402 -AAAAATCAGTA-AAAATCAT
1 AAAAAAT-A-TATAAAATAAT
159421 AAAAAATATATAAAA-AATT
1 AAAAAATATATAAAATAA-T
* * *
159440 GTAAAATTTTATAAAA-ATAT
1 -AAAAAATATATAAAATA-AT
*
159460 AAAAAATTTATAAAATACAT
1 AAAAAATATATAAAATA-AT
159480 AAAAAA
1 AAAAAA
159486 AAGCCTTTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 17
0.73 0.09 0.19
Matches are distributed among these distances:
16 6 0.09
18 7 0.11
19 23 0.35
20 29 0.44
21 1 0.02
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATATATAAAATAAT
Found at i:159667 original size:20 final size:21
Alignment explanation
Indices: 159644--159688 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
159634 TTTCTTTTGG
159644 TACAATAATTTTTAT-TTT-TT
1 TACAAT-ATTTTTATATTTCTT
*
159664 TACAATTTTTTTATATTTCTT
1 TACAATATTTTTATATTTCTT
159685 TACA
1 TACA
159689 TTTTTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 9 0.41
21 6 0.27
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (21 bp):
TACAATATTTTTATATTTCTT
Found at i:159680 original size:21 final size:19
Alignment explanation
Indices: 159652--159693 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
159642 GGTACAATAA
*
159652 TTTTTATTTTTTTACAATTT
1 TTTTTATTTCTTTAC-ATTT
159672 TTTTATATTTCTTTACATTT
1 TTTT-TATTTCTTTACATTT
159692 TT
1 TT
159694 ATAATCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTATTTCTTTACATTT
Found at i:159763 original size:18 final size:18
Alignment explanation
Indices: 159737--159805 Score: 52
Period size: 18 Copynumber: 3.8 Consensus size: 18
159727 TTTTTTCTAT
*
159737 ATTTCTATATATTTTACG
1 ATTTTTATATATTTTACG
* *
159755 ATTTTTATAAAAATTTAC-
1 ATTTTTAT-ATATTTTACG
* *
159773 ACTTTTTATATTTTTTAAG
1 A-TTTTTATATATTTTACG
*
159792 ATATTTATA-ATTTT
1 ATTTTTATATATTTT
159806 TTTACATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
17 4 0.10
18 20 0.51
19 15 0.38
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTATATATTTTACG
Found at i:159842 original size:9 final size:9
Alignment explanation
Indices: 159775--159847 Score: 58
Period size: 9 Copynumber: 7.8 Consensus size: 9
159765 AAATTTACAC
*
159775 TTTTTATAT
1 TTTTTATAA
159784 TTTTTA-AGA
1 TTTTTATA-A
*
159793 TATTTATAA
1 TTTTTATAA
*
159802 TTTTTTTACA
1 TTTTTATA-A
159812 TTTTTATTAAA
1 TTTTTA-T-AA
* *
159823 ATTTAATAA
1 TTTTTATAA
159832 TTTTTATAA
1 TTTTTATAA
159841 TTTTTAT
1 TTTTTAT
159848 TCCCACATGT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
8 1 0.02
9 34 0.68
10 8 0.16
11 6 0.12
12 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:159846 original size:19 final size:19
Alignment explanation
Indices: 159775--159846 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
159765 AAATTTACAC
* *
159775 TTTTTATATTTTTTAA-GA
1 TTTTTATAATTTTTAATAA
* *
159793 TATTTATAATTTTT-TTACA
1 TTTTTATAATTTTTAATA-A
**
159812 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAATTTTTAATAA
159832 TTTTTATAATTTTTA
1 TTTTTATAATTTTTA
159847 TTCCCACATG
Statistics
Matches: 40, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
18 12 0.30
19 13 0.32
20 13 0.32
21 2 0.05
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTTTATAATTTTTAATAA
Found at i:159846 original size:29 final size:28
Alignment explanation
Indices: 159755--159848 Score: 95
Period size: 30 Copynumber: 3.3 Consensus size: 28
159745 ATATTTTACG
* * *
159755 ATTTTTATAAAAATTTACACTTTTTAT-
1 ATTTTTATTAAAATTTATAATTTTTATA
*
159782 A-TTTT-TTAAGATATTTATAATTTTTTTA
1 ATTTTTATTAA-A-ATTTATAATTTTTATA
159810 CATTTTTATTAAAATTTAATAATTTTTATA
1 -ATTTTTATTAAAATTT-ATAATTTTTATA
159840 ATTTTTATT
1 ATTTTTATT
159849 CCCACATGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
25 3 0.05
26 5 0.09
27 13 0.24
29 14 0.25
30 16 0.29
31 4 0.07
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (28 bp):
ATTTTTATTAAAATTTATAATTTTTATA
Found at i:163859 original size:17 final size:16
Alignment explanation
Indices: 163837--163875 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
163827 TTCACCTTAA
163837 TTTTTTATATTCAGTTT
1 TTTTTTAT-TTCAGTTT
**
163854 TTTTTTATTTTGGTTT
1 TTTTTTATTTCAGTTT
163870 TTTTTT
1 TTTTTT
163876 TCTAGTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.10, C:0.03, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTTTATTTCAGTTT
Found at i:163923 original size:23 final size:22
Alignment explanation
Indices: 163887--163940 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
163877 CTAGTTTTTA
163887 TCTGCCTCTATGGCACGCTTTTCC
1 TCTGCCT-TATGGCACG-TTTTCC
* *
163911 TCTGCCTTGTGGCACGTTTTCG
1 TCTGCCTTATGGCACGTTTTCC
*
163933 TCTACCTT
1 TCTGCCTT
163941 TGTAGTAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 8 0.30
24 7 0.26
ACGTcount: A:0.07, C:0.33, G:0.19, T:0.41
Consensus pattern (22 bp):
TCTGCCTTATGGCACGTTTTCC
Found at i:166229 original size:83 final size:83
Alignment explanation
Indices: 166090--166248 Score: 239
Period size: 83 Copynumber: 1.9 Consensus size: 83
166080 CACAGCCAGG
* * * * *
166090 AATGTAACACTCAAATCCCGAAAATCATTGTCGGTTAGGGTTTCGGTGTCTTACTATTAATTTAT
1 AATGTAACACCCAAATCCCGAAAATCATCGTCGGTTAGGGCTTAGGTGTATTACTATTAATTTAT
*
166155 TATTGTTCATCTTGATTA
66 CATTGTTCATCTTGATTA
*
166173 AATGTAACACCCAAATCCCGAAAA-CTATCGTCGGTTAGGGCTTAGGTGTATTACTATTCATTTA
1 AATGTAACACCCAAATCCCGAAAATC-ATCGTCGGTTAGGGCTTAGGTGTATTACTATTAATTTA
166237 TCATTGTTCATC
65 TCATTGTTCATC
166249 CTTACATAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
82 1 0.01
83 67 0.99
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (83 bp):
AATGTAACACCCAAATCCCGAAAATCATCGTCGGTTAGGGCTTAGGTGTATTACTATTAATTTAT
CATTGTTCATCTTGATTA
Found at i:166838 original size:23 final size:23
Alignment explanation
Indices: 166808--166854 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
166798 TAGTACTATT
166808 AAGTCTATATTCCAACTTAAACA
1 AAGTCTATATTCCAACTTAAACA
166831 AAGTCTATATTCCAACTTAAACA
1 AAGTCTATATTCCAACTTAAACA
166854 A
1 A
166855 CATGCATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (23 bp):
AAGTCTATATTCCAACTTAAACA
Found at i:166937 original size:30 final size:30
Alignment explanation
Indices: 166902--166968 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
166892 GACAATCCCA
166902 AGTACATAAAGCAAAAGAAAACATCATCCT
1 AGTACATAAAGCAAAAGAAAACATCATCCT
*
166932 AGTACATAAAGCAAAAGAAAACATCATTCT
1 AGTACATAAAGCAAAAGAAAACATCATCCT
166962 AGTACAT
1 AGTACAT
166969 GCCACAAGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.52, C:0.18, G:0.10, T:0.19
Consensus pattern (30 bp):
AGTACATAAAGCAAAAGAAAACATCATCCT
Found at i:176093 original size:2 final size:2
Alignment explanation
Indices: 176086--176110 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
176076 TCATAACTTT
176086 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
176111 TTTCAATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:187711 original size:29 final size:29
Alignment explanation
Indices: 187675--187732 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
187665 TATTTTTTTT
* *
187675 GTCATCCAATTATAAAAATTTATAAAATG
1 GTCATCCAACTATAAAAACTTATAAAATG
* *
187704 GTCATCCAACTGTAAAAACTTATAGAATG
1 GTCATCCAACTATAAAAACTTATAAAATG
187733 ATTGTCCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (29 bp):
GTCATCCAACTATAAAAACTTATAAAATG
Found at i:196863 original size:20 final size:18
Alignment explanation
Indices: 196822--196863 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
196812 AGTCCTTGAC
*
196822 ATTT-ACTCTTTTTATTA
1 ATTTAACTCTTTTTATAA
196839 ATTTAACTCTTTTTAACTAA
1 ATTTAACTCTTTTT-A-TAA
196859 ATTTA
1 ATTTA
196864 CCCATAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 9 0.43
19 1 0.05
20 7 0.33
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTAACTCTTTTTATAA
Found at i:209473 original size:57 final size:55
Alignment explanation
Indices: 209383--209498 Score: 135
Period size: 57 Copynumber: 2.1 Consensus size: 55
209373 CGAGAATTTG
* * *
209383 AAAAAAAATTGATATTGGTCATTGGATGACCGACACTCCCTCTTTTATCTGACAGAA
1 AAAAAAAATTGATATTGATCATTGCATGACCGACACTCCCT-TTTAATCTGACA-AA
* * * *
209440 AAAAAAAATTGGTGTTGATCATTGCAT-AGCCGACACTTCCTTTTAATCTGATAAA
1 AAAAAAAATTGATATTGATCATTGCATGA-CCGACACTCCCTTTTAATCTGACAAA
209495 AAAA
1 AAAA
209499 TTAAATTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
55 6 0.12
56 11 0.22
57 34 0.67
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (55 bp):
AAAAAAAATTGATATTGATCATTGCATGACCGACACTCCCTTTTAATCTGACAAA
Found at i:209594 original size:121 final size:121
Alignment explanation
Indices: 209448--209750 Score: 312
Period size: 121 Copynumber: 2.5 Consensus size: 121
209438 AAAAAAAAAA
* * *
209448 TTGGTGTTGATCATTGCATAGCCGACACTTCCTTTTAATCTG-ATAAAAAAATTAAATTTTTTGG
1 TTGGTGTTGGTCATTGCATAGCCGACACCT-CTTTTAATCTGAAT-AAAAAATCAAA-TTTTTGG
* **
209512 GTGCCGACCAT-GCAATGATCGACACCCCCTTTTT-T-AGATAAAAAATTTTAAATTATT
63 GTGCCGACCATGGC-ATGATCGACACCCCCTTTTTGTCAAATAAAAAAACTTAAATTATT
* *
209569 TTGGTGTTGGTCATTGCATGGCCGACACCTCTTTTTATCTGAATAAAAAATCAAATTTTTGGGTG
1 TTGGTGTTGGTCATTGCATAGCCGACACCTCTTTTAATCTGAATAAAAAATCAAATTTTTGGGTG
** ** ** *
209634 TTGGTCATGGCATGATCGACACTTCCTTTTTGTCAAATAAAAAAACTTAAATTTTT
66 CCGACCATGGCATGATCGACACCCCCTTTTTGTCAAATAAAAAAACTTAAATTATT
* ** * * *
209690 TTTGTGTTGGTCA-TGCCATAATCGACACTCCTTTTTTTATCTG-GTAAAAAATCAAATTTTT
1 TTGGTGTTGGTCATTG-CATAGCCGACA--CCTCTTTTAATCTGAATAAAAAATCAAATTTTT
209751 TTGTTGGTCA
Statistics
Matches: 154, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
119 32 0.21
120 25 0.16
121 67 0.44
122 17 0.11
123 13 0.08
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (121 bp):
TTGGTGTTGGTCATTGCATAGCCGACACCTCTTTTAATCTGAATAAAAAATCAAATTTTTGGGTG
CCGACCATGGCATGATCGACACCCCCTTTTTGTCAAATAAAAAAACTTAAATTATT
Found at i:209635 original size:59 final size:59
Alignment explanation
Indices: 209448--209761 Score: 191
Period size: 60 Copynumber: 5.2 Consensus size: 59
209438 AAAAAAAAAA
* * * * *
209448 TTGGTGTTGATCATTGCAT-AGCCGACACTTCCTTTTAATCTG-ATAAAAAAATTAAATTTT
1 TTGGTGTTGGTCATTGCATGA-TCGACACCT-CTTTTTATCTGAAT-AAAAAATCAAATTTT
** ** * * *
209508 TTGGGTGCCGACCA-TGCAATGATCGACACCCCCTTTT-T-T-AGATAAAAAATTTTAAATTATT
1 TT-GGTGTTGGTCATTGC-ATGATCGACACCTCTTTTTATCTGA-ATAAAAAA--TCAAATT-TT
**
209569 TTGGTGTTGGTCATTGCATGGCCGACACCTCTTTTTATCTGAATAAAAAATCAAATTTT
1 TTGGTGTTGGTCATTGCATGATCGACACCTCTTTTTATCTGAATAAAAAATCAAATTTT
* * * * * *
209628 TGGGTGTTGGTCATGGCATGATCGACACTTCCTTTTTGTC-AAATAAAAAAACTTAAATTTTT
1 TTGGTGTTGGTCATTGCATGATCGACACCT-CTTTTTATCTGAAT-AAAAAA-TCAAA-TTTT
* * * *
209690 TTTGTGTTGGTCA-TGCCATAATCGACACTCCTTTTTTTATCTG-GTAAAAAATCAAATTTT
1 TTGGTGTTGGTCATTG-CATGATCGACA--CCTCTTTTTATCTGAATAAAAAATCAAATTTT
209750 TT--TGTTGGTCAT
1 TTGGTGTTGGTCAT
209762 ACAATGGCTG
Statistics
Matches: 198, Mismatches: 35, Indels: 43
0.72 0.13 0.16
Matches are distributed among these distances:
58 16 0.08
59 33 0.17
60 64 0.32
61 33 0.17
62 41 0.21
63 9 0.05
64 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (59 bp):
TTGGTGTTGGTCATTGCATGATCGACACCTCTTTTTATCTGAATAAAAAATCAAATTTT
Found at i:209739 original size:62 final size:61
Alignment explanation
Indices: 209600--209753 Score: 161
Period size: 62 Copynumber: 2.5 Consensus size: 61
209590 CCGACACCTC
* * *
209600 TTTTTATCTGAATAAAAAATCAAA-TTTTTGGGTGTTGGTCATGGCATGATCGACACTTCCTT
1 TTTTTATCTG--TAAAAAATCAAATTTTTTTGGTGTTGGTCATGCCATAATCGACACTTCCTT
* ** * * *
209662 TTTGTCAAAT-AAAAAAACTTAAATTTTTTTTGTGTTGGTCATGCCATAATCGACAC-TCCTT
1 TTT-TTATCTGTAAAAAA-TCAAATTTTTTTGGTGTTGGTCATGCCATAATCGACACTTCCTT
209723 TTTTTATCTGGTAAAAAATCAAATTTTTTTG
1 TTTTTATCT-GTAAAAAATCAAATTTTTTTG
209754 TTGGTCATAC
Statistics
Matches: 72, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
60 9 0.12
61 23 0.32
62 37 0.51
63 3 0.04
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (61 bp):
TTTTTATCTGTAAAAAATCAAATTTTTTTGGTGTTGGTCATGCCATAATCGACACTTCCTT
Found at i:210088 original size:57 final size:56
Alignment explanation
Indices: 209936--210111 Score: 169
Period size: 57 Copynumber: 3.1 Consensus size: 56
209926 AAAATTTAAA
* *
209936 TTTTTTATCTGACAAAAAAAGA-GTGTCGACCATTGC-ATGGCCAACACCAAAAATTTAAT
1 TTTTTTATCAGATAAAAAAAGAGGTGTCGACCA-TGCAATGGCCAACACC--AAATTT--T
* * * * ** *
209995 TTTTTTATCAGAT-TAAAAGGAGATGTTGGTCATGCAATGACCAACACCAAATTTT
1 TTTTTTATCAGATAAAAAAAGAGGTGTCGACCATGCAATGGCCAACACCAAATTTT
* * *
210050 TTTTTCTATCAGATAAAAAAAGAGGTGTCGACCATGCAATGGCCAATAGCAAAATTT
1 TTTTT-TATCAGATAAAAAAAGAGGTGTCGACCATGCAATGGCCAACACCAAATTTT
210107 TTTTT
1 TTTTT
210112 AAGTTTTTGT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
55 6 0.06
56 8 0.09
57 43 0.46
58 9 0.10
59 28 0.30
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (56 bp):
TTTTTTATCAGATAAAAAAAGAGGTGTCGACCATGCAATGGCCAACACCAAATTTT
Found at i:210163 original size:15 final size:16
Alignment explanation
Indices: 210130--210163 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
210120 GTATTTTCGT
*
210130 ATATTAATAAAATATC
1 ATATTAAAAAAATATC
210146 ATATTAAAAAAATA-C
1 ATATTAAAAAAATATC
210161 ATA
1 ATA
210164 GGTGTCGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATTAAAAAAATATC
Found at i:219918 original size:23 final size:23
Alignment explanation
Indices: 219845--219997 Score: 132
Period size: 23 Copynumber: 6.6 Consensus size: 23
219835 TATACGGAAC
* *
219845 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
219867 -AACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
219888 GGGCAACAGAGAGCACACACAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
** *
219914 AAACAGAGATTACACAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
219937 AATCAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
219960 AATCAGAGAGCAGACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
219983 AATAACAGAGAGCAC
1 -A-AACAGAGAGCAC
219998 GAGACGTGCT
Statistics
Matches: 105, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
21 17 0.16
23 58 0.55
24 1 0.01
25 23 0.22
26 6 0.06
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:219944 original size:46 final size:47
Alignment explanation
Indices: 219893--220018 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 47
219883 GTGCTGGGCA
**
219893 ACAGAGAGCACACACAGTGCTAAACAGAGATTACACAAAGTACTAAT
1 ACAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
* * * * *
219940 -CAGAGAGCACACAAAGTGCTAATCAGAGAGCAGACACAGTGCTAAT
1 ACAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
* *
219986 AACAGAGAGCACGAGAC-GTGCTAAACAAAGAGC
1 -ACAGAGAGCAC-ACACAGTGCTAAACAGAGAGC
220019 GCGCTACTGT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 39 0.60
48 24 0.37
49 2 0.03
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12
Consensus pattern (47 bp):
ACAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
Found at i:219967 original size:69 final size:67
Alignment explanation
Indices: 219845--219994 Score: 187
Period size: 69 Copynumber: 2.1 Consensus size: 67
219835 TATACGGAAC
*
219845 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAG
1 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACACAG
219910 TGCT-
63 TGCTA
* *
219914 AAACAGAGATTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCAGACACA
1 AAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACACA
219978 GTGCTA
62 GTGCTA
219984 ATAACAGAGAG
1 A-AACAGAGAG
219995 CACGAGACGT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
68 2 0.03
69 31 0.44
70 12 0.17
71 19 0.27
72 7 0.10
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.13
Consensus pattern (67 bp):
AAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAGCACACACAGTGC
TA
Found at i:220012 original size:23 final size:23
Alignment explanation
Indices: 219892--220018 Score: 112
Period size: 23 Copynumber: 5.4 Consensus size: 23
219882 AGTGCTGGGC
*
219892 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCAGACACAGTGCTA
** * * *
219915 AACAGAGATTACACAAAGTACTA
1 AACAGAGAGCAGACACAGTGCTA
* * *
219938 ATCAGAGAGCACACAAAGTGCTA
1 AACAGAGAGCAGACACAGTGCTA
*
219961 ATCAGAGAGCAGACACAGTGCTAA
1 AACAGAGAGCAGACACAGTGCT-A
*
219985 TAACAGAGAGCACGAGAC-GTGCTA
1 -AACAGAGAGCA-GACACAGTGCTA
*
220009 AACAAAGAGC
1 AACAGAGAGC
220019 GCGCTACTGT
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
23 67 0.76
24 2 0.02
25 15 0.17
26 4 0.05
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.12
Consensus pattern (23 bp):
AACAGAGAGCAGACACAGTGCTA
Found at i:222369 original size:20 final size:20
Alignment explanation
Indices: 222328--222369 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
222318 TTTTAGTATA
* *
222328 TAATAAAATAAATGAAATTT
1 TAATAAAATAAATAAAAATT
222348 TAATAAAA-AAATTAAAAATT
1 TAATAAAATAAA-TAAAAATT
222368 TA
1 TA
222370 TTTAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
TAATAAAATAAATAAAAATT
Found at i:227094 original size:184 final size:182
Alignment explanation
Indices: 226780--227138 Score: 414
Period size: 184 Copynumber: 2.0 Consensus size: 182
226770 TAATCGATCG
* * * *
226780 AACAAATTTAATTTGATTAATCCATCAATGGTTGAATTTAATTCGATCGAAAATCGGTTAATAAT
1 AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
* * * * * **
226845 TTTTTGAAATTTCGGTTATCGGTTAGTTCAGTTCGAAATCAATTACTTAATTGAAATAAATAATA
66 TTTTTGAAATTTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAAT-A-A
* *
226910 TATATTATATATAATTGTTGACTTTTTGTTTGATTGTTAACTTTTAATCCACCA
129 TATATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAATCCACCA
* ** * * * * *
226964 AACATATTTAATTCGATTAATCAATCGGTGGTTGAATTTAGCTCGATCGGAGATTGATTAATGAT
1 AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
* * ** *
227029 TTTTTG-AATCTTTAGTTTTCGGTTAGATCAATTCGAAATCGGGTAATTTATCAAAATAAATAAT
66 TTTTTGAAAT-TTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAATAAT
* * * *
227093 ATATTATATATAATTTTTAATTTTTTGTTTGTTTATTAATTTTTAA
130 ATATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAA
227139 GATTTATGTT
Statistics
Matches: 144, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
182 42 0.29
183 4 0.03
184 98 0.68
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (182 bp):
AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
TTTTTGAAATTTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAATAATA
TATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAATCCACCA
Found at i:239399 original size:32 final size:32
Alignment explanation
Indices: 239362--239428 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
239352 GTTTTTCGGG
* *
239362 TTTAGATTTCAAAATTTTTGGGAATTTGGGGA
1 TTTAGATTTCAAAAATTTAGGGAATTTGGGGA
* * *
239394 TTTAGATTTTAAAAATTTAGGGATTTTTGGGA
1 TTTAGATTTCAAAAATTTAGGGAATTTGGGGA
239426 TTT
1 TTT
239429 TTAGGGTTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.28, C:0.01, G:0.22, T:0.48
Consensus pattern (32 bp):
TTTAGATTTCAAAAATTTAGGGAATTTGGGGA
Found at i:239477 original size:44 final size:43
Alignment explanation
Indices: 239440--239526 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
239430 TAGGGTTGTT
* *
239440 GGGTTTGGGGAATTTGGTTTAGGTTTAAGAAATTTAGGGATTTC
1 GGGTTTGGAGAATTTGGTTTAAGTTTAA-AAATTTAGGGATTTC
*
239484 GGGTTTGGAGATTTTGGTTTAAGTTTAAAAATTTAGGGATTTC
1 GGGTTTGGAGAATTTGGTTTAAGTTTAAAAATTTAGGGATTTC
239527 CGGGACTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 15 0.38
44 25 0.62
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (43 bp):
GGGTTTGGAGAATTTGGTTTAAGTTTAAAAATTTAGGGATTTC
Found at i:240384 original size:87 final size:87
Alignment explanation
Indices: 240252--240426 Score: 305
Period size: 87 Copynumber: 2.0 Consensus size: 87
240242 TTTGAGACTT
* * * *
240252 ACTTTTGCCTCTTGGCTTAGGAGTTATGTTTTTGTCTTATGTTTGATTGGTATGCTGTATAAGTC
1 ACTTTTGCCTCTAGGCTTAGGAGTTATGTTTTTGTCTAATATTTGATTGGTATGCTGCATAAGTC
*
240317 GGCAGTGTTTGTCTTGTCAGGG
66 GACAGTGTTTGTCTTGTCAGGG
240339 ACTTTTGCCTCTAGGCTTAGGAGTTATGTTTTTGTCTAATATTTGATTGGTATGCTGCATAAGTC
1 ACTTTTGCCTCTAGGCTTAGGAGTTATGTTTTTGTCTAATATTTGATTGGTATGCTGCATAAGTC
240404 GACAGTGTTTGTCTTGTCAGGG
66 GACAGTGTTTGTCTTGTCAGGG
240426 A
1 A
240427 TTGATTTTAG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 83 1.00
ACGTcount: A:0.17, C:0.13, G:0.26, T:0.44
Consensus pattern (87 bp):
ACTTTTGCCTCTAGGCTTAGGAGTTATGTTTTTGTCTAATATTTGATTGGTATGCTGCATAAGTC
GACAGTGTTTGTCTTGTCAGGG
Found at i:240693 original size:22 final size:22
Alignment explanation
Indices: 240668--240712 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
240658 TGTTTAATAA
240668 TGTTTAATCGATGTTGCTGTTT
1 TGTTTAATCGATGTTGCTGTTT
240690 TGTTTAATCGATGTTGCTGTTT
1 TGTTTAATCGATGTTGCTGTTT
240712 T
1 T
240713 ACCGACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.09, G:0.22, T:0.56
Consensus pattern (22 bp):
TGTTTAATCGATGTTGCTGTTT
Found at i:243855 original size:18 final size:18
Alignment explanation
Indices: 243802--243856 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
243792 CAGCACCCCT
* *
243802 TCCCTCACTCTCACCCCC
1 TCCCTCACCCTCACCACC
* * *
243820 ACCCCCACCCCCACCACC
1 TCCCTCACCCTCACCACC
*
243838 TCCCTCACCCTCAACACC
1 TCCCTCACCCTCACCACC
243856 T
1 T
243857 TCACTAACAC
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.18, C:0.67, G:0.00, T:0.15
Consensus pattern (18 bp):
TCCCTCACCCTCACCACC
Found at i:243907 original size:72 final size:72
Alignment explanation
Indices: 243771--243909 Score: 163
Period size: 72 Copynumber: 1.9 Consensus size: 72
243761 TCACCCTCAA
* * * * **
243771 CACCTTCAACACCTTCACTAACAGCACCCCTTCCCTCACTCTCACCCCCACCCCCACCCCCACCA
1 CACCCTCAACACCTTCACTAACACCACCCCTTCCCTCACCCTCACCACCACCCAAACCCCCACCA
243836 CCTCCCT
66 CCTCCCT
* * * * *
243843 CACCCTCAACACCTTCACTAACACCA-CCTTTACTCTCACCCTCACCACCTCTCAAACCCTCACC
1 CACCCTCAACACCTTCACTAACACCACCCCTT-CCCTCACCCTCACCACCACCCAAACCCCCACC
243907 ACC
65 ACC
243910 CTTACTGCCA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
71 4 0.07
72 51 0.93
ACGTcount: A:0.24, C:0.58, G:0.01, T:0.18
Consensus pattern (72 bp):
CACCCTCAACACCTTCACTAACACCACCCCTTCCCTCACCCTCACCACCACCCAAACCCCCACCA
CCTCCCT
Found at i:243944 original size:90 final size:87
Alignment explanation
Indices: 243839--244119 Score: 269
Period size: 90 Copynumber: 3.2 Consensus size: 87
243829 CCCACCACCT
243839 CCCTCACCCTCAACACCTTCACTAACACCACCTTTACTCTCACCCTCACCACCTCTCAAACCCTC
1 CCCTCACCCTCAACACCTTCACTAACACCACCTTTA--CTCACCCTCACCACCTCTCAAACCCTC
243904 ACCACCCTTACTGCCATAATCCAAA
64 ACCACCCTTACTGCCAT-ATCCAAA
* * * *
243929 CCCTCACCCTTAACACCCTT-AC---C-CTCA-CTTGA---ACCCTCACCACCAC-CATCACCCT
1 CCCTCACCCTCAACA-CCTTCACTAACAC-CACCTTTACTCACCCTCACCACCTCTCA-AACCCT
* ** * ***
243984 CAACA-CCTTCACTAACAGTACCCCTT
63 CACCACCCTT-ACTGCCA-TATCCAAA
* *
244010 CCCTCACCCTCAACACCTTCACTAACAACACCCTTACTCGAACCCTCACCACCTCTCAAACCCTC
1 CCCTCACCCTCAACACCTTCACTAACACCACCTTTACTC--ACCCTCACCACCTCTCAAACCCTC
244075 ACCACCCTTACTGCCATCATCCAAA
64 ACCACCCTTACTGCCAT-ATCCAAA
244100 CCCTCACCCTCAACACCTTC
1 CCCTCACCCTCAACACCTTC
244120 TGCACCCTCA
Statistics
Matches: 148, Mismatches: 24, Indels: 38
0.70 0.11 0.18
Matches are distributed among these distances:
80 10 0.07
81 46 0.31
82 1 0.01
84 3 0.02
85 3 0.02
86 5 0.03
87 3 0.02
89 1 0.01
90 66 0.45
91 10 0.07
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (87 bp):
CCCTCACCCTCAACACCTTCACTAACACCACCTTTACTCACCCTCACCACCTCTCAAACCCTCAC
CACCCTTACTGCCATATCCAAA
Found at i:244055 original size:36 final size:35
Alignment explanation
Indices: 243977--244063 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 35
243967 ACCACCACCA
*
243977 TCACCCTCAACACCTTCACTAACAGTACCCCTTCCC
1 TCACCCTCAACACCTTCACTAACAG-ACCCCTTCAC
244013 TCACCCTCAACACCTTCACTAACA-ACACCCTT-AC
1 TCACCCTCAACACCTTCACTAACAGAC-CCCTTCAC
*
244047 TCGAACCCTCACCACCT
1 TC--ACCCTCAACACCT
244064 CTCAAACCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
34 5 0.11
35 5 0.11
36 36 0.78
ACGTcount: A:0.28, C:0.49, G:0.02, T:0.21
Consensus pattern (35 bp):
TCACCCTCAACACCTTCACTAACAGACCCCTTCAC
Found at i:244727 original size:64 final size:64
Alignment explanation
Indices: 244628--244756 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
244618 TGTGCAAACA
244628 AAAAAGCAAACAGAAACAGCACAGCAATAAAACATGAAGGGACCACTTCCAAAATAATTACTAC
1 AAAAAGCAAACAGAAACAGCACAGCAATAAAACATGAAGGGACCACTTCCAAAATAATTACTAC
*
244692 AAAAAGCAAACAGAAACAGCATAGCAATAAAACATGAAGGGACCACTTCCAAAATAATTACTAC
1 AAAAAGCAAACAGAAACAGCACAGCAATAAAACATGAAGGGACCACTTCCAAAATAATTACTAC
244756 A
1 A
244757 GAACAAATTA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.13
Consensus pattern (64 bp):
AAAAAGCAAACAGAAACAGCACAGCAATAAAACATGAAGGGACCACTTCCAAAATAATTACTAC
Found at i:245900 original size:44 final size:45
Alignment explanation
Indices: 245850--245952 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 45
245840 AAACCTAAGT
* *
245850 CCCGAAAATCCCTAAATTT-TTAAACTTAAACCAAAATCTCCAAA
1 CCCGAAAATCCCTAAATTTCTTAAACCTAAACCAAAATCCCCAAA
*
245894 CCCG-AAAT-CCTCAAATTTCTTAAACCTAAACCAAATTCCCCAAA
1 CCCGAAAATCCCT-AAATTTCTTAAACCTAAACCAAAATCCCCAAA
245938 CCC-AACAA-CCCTAAA
1 CCCGAA-AATCCCTAAA
245953 AGTCCCAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
42 3 0.06
43 10 0.20
44 33 0.65
45 5 0.10
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.21
Consensus pattern (45 bp):
CCCGAAAATCCCTAAATTTCTTAAACCTAAACCAAAATCCCCAAA
Found at i:249076 original size:24 final size:25
Alignment explanation
Indices: 249049--249104 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
249039 AGCCCACACG
249049 AGCCCAGA-ATGATTAGCTCTTACA
1 AGCCCAGAGATGATTAGCTCTTACA
*
249073 AGCCCA-AGATGATTAGCTCTTACG
1 AGCCCAGAGATGATTAGCTCTTACA
249097 AGCCCAGA
1 AGCCCAGA
249105 CAGAGTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (25 bp):
AGCCCAGAGATGATTAGCTCTTACA
Found at i:252505 original size:20 final size:20
Alignment explanation
Indices: 252464--252503 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
252454 AGTTTTAGTA
252464 TAATAAAATAAATGAAATTT
1 TAATAAAATAAATGAAATTT
252484 TAATAAAATAAAT-AAATTT
1 TAATAAAATAAATGAAATTT
252503 T
1 T
252504 TAGTTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAATAAAATAAATGAAATTT
Found at i:252510 original size:24 final size:24
Alignment explanation
Indices: 252456--252511 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 24
252446 ATTTGATAAG
252456 TTTTAGTATAATAAAATAAATGAAA
1 TTTTAGT-TAATAAAATAAATGAAA
252481 --TT--TTAATAAAATAAAT-AAA
1 TTTTAGTTAATAAAATAAATGAAA
252500 TTTTTAGTTAAT
1 -TTTTAGTTAAT
252512 TTATTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 11
0.70 0.00 0.30
Matches are distributed among these distances:
19 3 0.12
20 13 0.50
21 1 0.04
22 2 0.08
23 2 0.08
24 5 0.19
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (24 bp):
TTTTAGTTAATAAAATAAATGAAA
Found at i:257094 original size:184 final size:182
Alignment explanation
Indices: 256780--257138 Score: 414
Period size: 184 Copynumber: 2.0 Consensus size: 182
256770 TAATCGATCG
* * * *
256780 AACAAATTTAATTTGATTAATCCATCAATGGTTGAATTTAATTCGATCGAAAATCGGTTAATAAT
1 AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
* * * * * **
256845 TTTTTGAAATTTCGGTTATCGGTTAGTTCAGTTCGAAATCAATTACTTAATTGAAATAAATAATA
66 TTTTTGAAATTTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAAT-A-A
* *
256910 TATATTATATATAATTGTTGACTTTTTGTTTGATTGTTAACTTTTAATCCACCA
129 TATATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAATCCACCA
* ** * * * * *
256964 AACATATTTAATTCGATTAATCAATCGGTGGTTGAATTTAGCTCGATCGGAGATTGATTAATGAT
1 AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
* * ** *
257029 TTTTTG-AATCTTTAGTTTTCGGTTAGATCAATTCGAAATCGGGTAATTTATCAAAATAAATAAT
66 TTTTTGAAAT-TTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAATAAT
* * * *
257093 ATATTATATATAATTTTTAATTTTTTGTTTGTTTATTAATTTTTAA
130 ATATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAA
257139 GATTTATGTT
Statistics
Matches: 144, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
182 42 0.29
183 4 0.03
184 98 0.68
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (182 bp):
AACAAATTTAATTCGATTAATCAATCAATGGTTGAATTTAACTCGATCGAAAATCGATTAATAAT
TTTTTGAAATTTCAGTTATCGGTTAGATCAATTCGAAATCAAGTAATTAATCAAAATAAATAATA
TATTATATATAATTGTTAACTTTTTGTTTGATTATTAACTTTTAATCCACCA
Found at i:265911 original size:31 final size:30
Alignment explanation
Indices: 265779--265913 Score: 96
Period size: 31 Copynumber: 4.5 Consensus size: 30
265769 GAATCATTAT
*
265779 TTGGGGCCTGAACTTGGTAATTGTTCCTATA
1 TTGGGGCCTGAACTTGGTAATTGTTCCCA-A
* * * * *
265810 TTGGAGCTTGAACTAGGCAATTGTTCTCAA
1 TTGGGGCCTGAACTTGGTAATTGTTCCCAA
* * * ** *
265840 TTGTGGCCTAAACTT-TTTTTTG-TCCAAA
1 TTGGGGCCTGAACTTGGTAATTGTTCCCAA
* *
265868 TT-AGTCCTTGAACTTGGTAATTGTTCCCACA
1 TTGGGGCC-TGAACTTGGTAATTGTTCCCA-A
265899 TTGGGGCCTGAACTT
1 TTGGGGCCTGAACTT
265914 TAAGGTTTTC
Statistics
Matches: 73, Mismatches: 26, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
27 3 0.04
28 12 0.16
29 7 0.10
30 15 0.21
31 33 0.45
32 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (30 bp):
TTGGGGCCTGAACTTGGTAATTGTTCCCAA
Found at i:267236 original size:14 final size:13
Alignment explanation
Indices: 267211--267235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
267201 ACTTTAGTAA
267211 GAACAAAAAAAAC
1 GAACAAAAAAAAC
267224 GAACAAAAAAAA
1 GAACAAAAAAAA
267236 AAACGAGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.12, G:0.08, T:0.00
Consensus pattern (13 bp):
GAACAAAAAAAAC
Found at i:268637 original size:13 final size:13
Alignment explanation
Indices: 268619--268644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
268609 ATTTTAAATG
268619 AGTTAATTTCATC
1 AGTTAATTTCATC
268632 AGTTAATTTCATC
1 AGTTAATTTCATC
268645 GGCATAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
AGTTAATTTCATC
Found at i:268998 original size:25 final size:24
Alignment explanation
Indices: 268953--269004 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
268943 ATTTTTAGAT
*
268953 TTTCTTCCCCCATCTTGCCCATTA
1 TTTCTTCCCCCATCTTGCCCATCA
268977 TTTCTT-CCCCATCTATGCCCCATCA
1 TTTCTTCCCCCATCT-TG-CCCATCA
269002 TTT
1 TTT
269005 TTTTTTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 8 0.32
24 8 0.32
25 9 0.36
ACGTcount: A:0.13, C:0.40, G:0.04, T:0.42
Consensus pattern (24 bp):
TTTCTTCCCCCATCTTGCCCATCA
Found at i:270242 original size:18 final size:18
Alignment explanation
Indices: 270219--270264 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
270209 AGTCCCAAAA
*
270219 AATTTTAAATATTTTTTT
1 AATTTTAAATAATTTTTT
*
270237 AATTTTAATTAATTTTTT
1 AATTTTAAATAATTTTTT
*
270255 AAGTTTAAAT
1 AATTTTAAAT
270265 TCATTTGTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
AATTTTAAATAATTTTTT
Found at i:270265 original size:19 final size:18
Alignment explanation
Indices: 270222--270270 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
270212 CCCAAAAAAT
*
270222 TTTAAA-TATTTTTTTAA
1 TTTAAATTAATTTTTTAA
*
270239 TTTTAATTAATTTTTTAA
1 TTTAAATTAATTTTTTAA
*
270257 GTTTAAATTCATTT
1 -TTTAAATTAATTT
270271 GTTGACTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 11 0.42
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTAAATTAATTTTTTAA
Found at i:271368 original size:3 final size:3
Alignment explanation
Indices: 271353--271396 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
271343 AATTAAAAGG
*
271353 GAA GAA GAT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
271397 GAGGTGTGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:274450 original size:28 final size:27
Alignment explanation
Indices: 274411--274463 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
274401 AATTATATAA
274411 AAATTTTCAATAAATAAAA-AATATATG
1 AAATTTTCAAT-AATAAAATAATATATG
* *
274438 AAATTATTTAATATTAAAATAATATA
1 AAATT-TTCAATAATAAAATAATATA
274464 ATATAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (27 bp):
AAATTTTCAATAATAAAATAATATATG
Found at i:275018 original size:19 final size:19
Alignment explanation
Indices: 274978--275018 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
274968 CTCCCAAAAA
*
274978 CCTTCAAAACTTTTTTTTT
1 CCTTCAAAACTTTTTTTCT
274997 CCTTCAAAA-TTTTTATTCT
1 CCTTCAAAACTTTTT-TTCT
275016 CCT
1 CCT
275019 CTCATCTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (19 bp):
CCTTCAAAACTTTTTTTCT
Found at i:279647 original size:23 final size:21
Alignment explanation
Indices: 279620--279667 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 21
279610 AATCAACTTT
*
279620 GATAATATCTTCAATAATTCTAA
1 GATAAAATCTTCAAT-ATTC-AA
279643 GATAAAATCTTCAATATTCAA
1 GATAAAATCTTCAATATTCAA
279664 GATA
1 GATA
279668 TGCTTCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 6 0.25
22 4 0.17
23 14 0.58
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.35
Consensus pattern (21 bp):
GATAAAATCTTCAATATTCAA
Found at i:285475 original size:58 final size:58
Alignment explanation
Indices: 285388--285533 Score: 188
Period size: 58 Copynumber: 2.5 Consensus size: 58
285378 ATATATTATA
* * * * *
285388 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAAATATTATTAAATTACTTATT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAATAAATTAAT
* *
285448 A-TTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATAAATTAAT
1 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
285505 ATTTTTATTAAATTATATTTAATAATAAT
1 ATTTTTATTAAATTATATTTAATAATAAT
285534 CATTAAAATT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
57 20 0.26
58 43 0.57
59 8 0.11
60 5 0.07
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
Found at i:285723 original size:16 final size:16
Alignment explanation
Indices: 285702--285773 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
285692 TGAATTACTG
*
285702 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCC
*
285718 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
285734 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
* *
285750 ATTATACCTCTATTCC
1 ATTACAGCTCTATTCC
285766 ATTACAGC
1 ATTACAGC
285774 GAACCAAACG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:309131 original size:20 final size:20
Alignment explanation
Indices: 309092--309132 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
309082 ATTCATGAAG
*
309092 TTAAAGAAATAAATTTTAAT
1 TTAAAGAAATAAATTGTAAT
309112 TTAAAGAAAATAAA-TGTAAT
1 TTAAAG-AAATAAATTGTAAT
309132 T
1 T
309133 ATCTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
TTAAAGAAATAAATTGTAAT
Found at i:318538 original size:2 final size:2
Alignment explanation
Indices: 318531--318557 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
318521 TTCCTCTGCG
318531 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
318558 GCCTTTCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:339527 original size:141 final size:140
Alignment explanation
Indices: 339273--339557 Score: 466
Period size: 141 Copynumber: 2.0 Consensus size: 140
339263 CCAAGATTTA
* * * *
339273 CCTGGTTCCATGTTTGGGTTCAAATTTGATCACGGCTCAGTGCCAATGCCAGTGTGTGGAAATCA
1 CCTGGTTCCATGTATGGGTTCAAATTTGATCACGGCTCAGTACCAATGCCAGTGTATGCAAATCA
339338 CAACCTTGATGATGGGTCTAAAGAGAGTCCCATTGATTCATCTTCATCATCATCATCAGGCATGA
66 CAACCTT-ATGATGGGTCTAAAGAGAGTCCCATTGATTCATCTTCATCATCATCATCAGGCATGA
*
339403 GTTCGGATAGT
130 GTTCAGATAGT
339414 CCTGGTTCCATGTATGGGTTCAAATTTGATCACGGCTCAGTACCAATGCCAGTGTATGCAAATCA
1 CCTGGTTCCATGTATGGGTTCAAATTTGATCACGGCTCAGTACCAATGCCAGTGTATGCAAATCA
*
339479 CAACC-T-TGATGGGTCTAAAGAGAGTCCCATTTATTCATCTTCATCATCATCATCATCAGGCAT
66 CAACCTTATGATGGGTCTAAAGAGAGTCCCATTGATTCATC-T--TCATCATCATCATCAGGCAT
339542 GAGTTCAGATAGT
128 GAGTTCAGATAGT
339555 CCT
1 CCT
339558 TTCCCTAATG
Statistics
Matches: 135, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
138 32 0.24
139 1 0.01
140 1 0.01
141 101 0.75
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (140 bp):
CCTGGTTCCATGTATGGGTTCAAATTTGATCACGGCTCAGTACCAATGCCAGTGTATGCAAATCA
CAACCTTATGATGGGTCTAAAGAGAGTCCCATTGATTCATCTTCATCATCATCATCAGGCATGAG
TTCAGATAGT
Found at i:365213 original size:22 final size:23
Alignment explanation
Indices: 365179--365232 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
365169 ATCTACTACA
*
365179 AAGGTAGACG-AAAACGTGCCAC
1 AAGGCAGACGAAAAACGTGCCAC
* *
365201 AAGGCAGAGGAAAAACGTGCCAT
1 AAGGCAGACGAAAAACGTGCCAC
365224 AGAGGCAGA
1 A-AGGCAGA
365233 TAAAAACTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 8 0.30
23 12 0.44
24 7 0.26
ACGTcount: A:0.43, C:0.19, G:0.31, T:0.07
Consensus pattern (23 bp):
AAGGCAGACGAAAAACGTGCCAC
Found at i:365238 original size:24 final size:23
Alignment explanation
Indices: 365189--365238 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
365179 AAGGTAGACG
*
365189 AAAACGTGCCACAAGGCAGAGGA
1 AAAACGTGCCACAAGGCAGAGAA
* *
365212 AAAACGTGCCATAGAGGCAGATAA
1 AAAACGTGCCACA-AGGCAGAGAA
365236 AAA
1 AAA
365239 CTAGAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.48, C:0.18, G:0.26, T:0.08
Consensus pattern (23 bp):
AAAACGTGCCACAAGGCAGAGAA
Found at i:378848 original size:26 final size:26
Alignment explanation
Indices: 378808--378865 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
378798 GTTTTTTTTA
378808 ATTCGATTAGCAAACTCCAAACAACG
1 ATTCGATTAGCAAACTCCAAACAACG
* *
378834 ATTCGATTAGTAAACTCTAAACAACG
1 ATTCGATTAGCAAACTCCAAACAACG
378860 ATTCGA
1 ATTCGA
378866 CAATCAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.24
Consensus pattern (26 bp):
ATTCGATTAGCAAACTCCAAACAACG
Found at i:379312 original size:29 final size:31
Alignment explanation
Indices: 379280--379351 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 31
379270 CAAATGAATT
379280 TAAAATTATTAAAATTA-TTTTTTAAAAT-A
1 TAAAATTATTAAAATTATTTTTTTAAAATAA
* * *
379309 T-AAATTTTTTAAATTATTTTTTTGAAATAA
1 TAAAATTATTAAAATTATTTTTTTAAAATAA
379339 TAAAATTATTAAA
1 TAAAATTATTAAA
379352 TAATTTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 13 0.37
29 11 0.31
30 2 0.06
31 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (31 bp):
TAAAATTATTAAAATTATTTTTTTAAAATAA
Found at i:379331 original size:14 final size:13
Alignment explanation
Indices: 379288--379330 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
379278 TTTAAAATTA
379288 TTAAAATTATTTT
1 TTAAAATTATTTT
379301 TTAAAATATAAATTTT
1 TTAAAAT-T--ATTTT
379317 TT-AAATTATTTT
1 TTAAAATTATTTT
379329 TT
1 TT
379331 TGAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.26
13 7 0.26
14 2 0.07
15 4 0.15
16 7 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTAAAATTATTTT
Found at i:379342 original size:30 final size:29
Alignment explanation
Indices: 379282--379358 Score: 84
Period size: 30 Copynumber: 2.7 Consensus size: 29
379272 AATGAATTTA
* *
379282 AAATTATTAAAATTA-TTTTTTAAAATAT
1 AAATTTTTTAAATTATTTTTTTAAAATAT
*
379310 AAATTTTTTAAATTATTTTTTTGAAATAAT
1 AAATTTTTTAAATTATTTTTTTAAAAT-AT
* * *
379340 AAAATTATTAAATAATTTT
1 AAATTTTTTAAATTATTTT
379359 AATTTCCAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 13 0.32
29 10 0.24
30 18 0.44
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (29 bp):
AAATTTTTTAAATTATTTTTTTAAAATAT
Found at i:379358 original size:29 final size:28
Alignment explanation
Indices: 379280--379358 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 28
379270 CAAATGAATT
*
379280 TAAAATTATTAAAATTATTTTTTAAAATA
1 TAAAATTATT-AAATAATTTTTTAAAATA
* * * *
379309 TAAATTTTTTAAATTATTTTTTTGAAATAA
1 TAAAATTATTAAA-TAATTTTTTAAAAT-A
379339 TAAAATTATTAAATAATTTT
1 TAAAATTATTAAATAATTTT
379359 AATTTCCAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 3 0.08
29 25 0.62
30 12 0.30
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (28 bp):
TAAAATTATTAAATAATTTTTTAAAATA
Found at i:379624 original size:15 final size:15
Alignment explanation
Indices: 379604--379633 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
379594 ACAACAGAAC
379604 AATAGCAAAACAAGA
1 AATAGCAAAACAAGA
*
379619 AATAGCAGAACAAGA
1 AATAGCAAAACAAGA
379634 CACCAAATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.13, G:0.17, T:0.07
Consensus pattern (15 bp):
AATAGCAAAACAAGA
Found at i:380025 original size:11 final size:11
Alignment explanation
Indices: 380009--380093 Score: 68
Period size: 11 Copynumber: 7.6 Consensus size: 11
379999 GATGATGATT
380009 ATAATTTTAAA
1 ATAATTTTAAA
380020 ATAATTTTAATA
1 ATAATTTTAA-A
*
380032 ATTTTATATTTAAA
1 A--TAAT-TTTAAA
*
380046 A-AAATTTAAA
1 ATAATTTTAAA
*
380056 TTAATTTTAAA
1 ATAATTTTAAA
*
380067 ATAAATTT--A
1 ATAATTTTAAA
380076 ATAATTTTAAA
1 ATAATTTTAAA
*
380087 ATTATTT
1 ATAATTT
380094 ACTGACATGA
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
9 8 0.14
10 6 0.10
11 32 0.55
12 2 0.03
14 5 0.09
15 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATAATTTTAAA
Found at i:380034 original size:20 final size:20
Alignment explanation
Indices: 380009--380093 Score: 72
Period size: 20 Copynumber: 4.3 Consensus size: 20
379999 GATGATGATT
380009 ATAATTTTAAAATAATTTT--A
1 ATAATTTT--AATAATTTTAAA
380029 ATAATTTT-AT-A-TTTAAA
1 ATAATTTTAATAATTTTAAA
* *
380046 AAAATTTAAATTAATTTTAAA
1 ATAATTTTAA-TAATTTTAAA
*
380067 ATAAATTTAATAATTTTAAA
1 ATAATTTTAATAATTTTAAA
*
380087 ATTATTT
1 ATAATTT
380094 ACTGACATGA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.06
16 1 0.02
17 9 0.17
18 1 0.02
19 1 0.02
20 24 0.46
21 13 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATTTTAATAATTTTAAA
Found at i:380045 original size:26 final size:25
Alignment explanation
Indices: 380012--380084 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 25
380002 GATGATTATA
*
380012 ATTTTAAAATAATTTTAATAATTTT
1 ATTTTAAAATAAATTTAATAATTTT
*
380037 ATATTTAAAA-AAATTT-A-AA-TTA
1 AT-TTTAAAATAAATTTAATAATTTT
380059 ATTTTAAAATAAATTTAATAATTTT
1 ATTTTAAAATAAATTTAATAATTTT
380084 A
1 A
380085 AAATTATTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
21 7 0.17
22 10 0.25
23 3 0.08
24 3 0.08
25 10 0.25
26 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTTTAAAATAAATTTAATAATTTT
Found at i:380064 original size:21 final size:20
Alignment explanation
Indices: 380040--380088 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 20
380030 TAATTTTATA
380040 TTTAAAA-AAATTTAAATTAAT
1 TTTAAAATAAATTT-AA-TAAT
380061 TTTAAAATAAATTTAATAAT
1 TTTAAAATAAATTTAATAAT
380081 TTTAAAAT
1 TTTAAAAT
380089 TATTTACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.44
21 9 0.33
22 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAAAATAAATTTAATAAT
Found at i:380085 original size:26 final size:26
Alignment explanation
Indices: 380010--380085 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
380000 ATGATGATTA
*
380010 TAATTTTAAAATAATTTTAATAATTT
1 TAATTTTAAAATAAATTTAATAATTT
380036 T-ATATTTAAAA-AAATTT-A-AA--T
1 TAAT-TTTAAAATAAATTTAATAATTT
380057 TAATTTTAAAATAAATTTAATAATTT
1 TAATTTTAAAATAAATTTAATAATTT
380083 TAA
1 TAA
380086 AATTATTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
21 9 0.21
22 8 0.19
23 3 0.07
24 3 0.07
25 7 0.17
26 12 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
TAATTTTAAAATAAATTTAATAATTT
Found at i:380284 original size:25 final size:26
Alignment explanation
Indices: 380238--380286 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
380228 TCAATTTGAC
* * *
380238 CAAAAAAAATTACGTATGAAAATGAA
1 CAAAAAAAATAAAGTATCAAAATGAA
380264 CAAAAAAAATAAAG-ATCAAAATG
1 CAAAAAAAATAAAGTATCAAAATG
380287 GTAAAACACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.65, C:0.08, G:0.10, T:0.16
Consensus pattern (26 bp):
CAAAAAAAATAAAGTATCAAAATGAA
Found at i:384420 original size:30 final size:30
Alignment explanation
Indices: 384339--384420 Score: 121
Period size: 30 Copynumber: 2.8 Consensus size: 30
384329 GGTAAAATAA
* * *
384339 TAAAAGTT-AGAAAAAAAATTTAGGTCTCT
1 TAAAAGTTGATAAAAAAAATTTTGGACTCT
*
384368 TAAAAGTTGGTAAAAAAAATTTTGGACTCT
1 TAAAAGTTGATAAAAAAAATTTTGGACTCT
384398 TAAAAGTTGATAAAAAAAATTTT
1 TAAAAGTTGATAAAAAAAATTTT
384421 CACTGTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 8 0.17
30 39 0.83
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (30 bp):
TAAAAGTTGATAAAAAAAATTTTGGACTCT
Found at i:384431 original size:29 final size:30
Alignment explanation
Indices: 384340--384431 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 30
384330 GTAAAATAAT
* * ** *
384340 AAAAGTT-AGAAAAAAAATTTAGGTCTCTT
1 AAAAGTTGATAAAAAAAATTTTGCACTCTA
* * *
384369 AAAAGTTGGTAAAAAAAATTTTGGACTCTT
1 AAAAGTTGATAAAAAAAATTTTGCACTCTA
*
384399 AAAAGTTGATAAAAAAAATTTT-CACTGTA
1 AAAAGTTGATAAAAAAAATTTTGCACTCTA
384428 AAAA
1 AAAA
384432 TTAAAAATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
29 15 0.28
30 39 0.72
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (30 bp):
AAAAGTTGATAAAAAAAATTTTGCACTCTA
Found at i:384821 original size:69 final size:69
Alignment explanation
Indices: 384747--384884 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
384737 TTTAAAATAT
* * * * * *
384747 TTTTTATTGTTCTCAATAATTGTATTGTAAAAATCAAATTGAAGGTTGAATCATTTAAATCACTT
1 TTTTTATTGTTCACAATAATTATATTATAAAAATCAAATTAAAGGTCGAATCATTCAAATCACTT
384812 ATTC
66 ATTC
*
384816 TTTTTATTGTTCACAATAATTATATTATAAAAATCAAATTAAAGGTCGAATCGTTCAAATCACTT
1 TTTTTATTGTTCACAATAATTATATTATAAAAATCAAATTAAAGGTCGAATCATTCAAATCACTT
384881 ATTC
66 ATTC
384885 CCGATTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.43
Consensus pattern (69 bp):
TTTTTATTGTTCACAATAATTATATTATAAAAATCAAATTAAAGGTCGAATCATTCAAATCACTT
ATTC
Found at i:385979 original size:21 final size:21
Alignment explanation
Indices: 385953--385992 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
385943 TGCTTCGACA
385953 TAATATAT-ATATATATAAAGC
1 TAATAT-TCATATATATAAAGC
*
385974 TAATATTCATATCTATAAA
1 TAATATTCATATATATAAA
385993 AAAAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (21 bp):
TAATATTCATATATATAAAGC
Found at i:393865 original size:18 final size:20
Alignment explanation
Indices: 393839--393876 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
393829 CTAAAAGAAC
*
393839 CGACTCAGCTAACGA-AACA
1 CGACTCAGCCAACGACAACA
393858 CGAC-CAGCCAACGACAACA
1 CGACTCAGCCAACGACAACA
393877 ACTTAGCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.42, C:0.37, G:0.16, T:0.05
Consensus pattern (20 bp):
CGACTCAGCCAACGACAACA
Found at i:397041 original size:29 final size:28
Alignment explanation
Indices: 396970--397041 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
396960 TAATTAGGTT
*
396970 TATTTAAAA-TAAAATATTAAATTTAAA
1 TATTTAAAATTAAAATAATAAATTTAAA
* * *
396997 T-TTAAAAAATAAAAAATAATAATTTTAAA
1 TATT-TAAAAT-TAAAATAATAAATTTAAA
397026 TATTTAAATATTAAAA
1 TATTTAAA-ATTAAAA
397042 ATTACTTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
26 2 0.06
27 5 0.15
29 23 0.68
30 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
TATTTAAAATTAAAATAATAAATTTAAA
Found at i:397226 original size:23 final size:22
Alignment explanation
Indices: 397184--397227 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
397174 ATAAAATGTT
397184 TTTTTTAAAAATTTAAAAATAA
1 TTTTTTAAAAATTTAAAAATAA
*
397206 TTTTTTATAAAATTTTAAAATA
1 TTTTTTA-AAAATTTAAAAATA
397228 TATAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTTTTAAAAATTTAAAAATAA
Found at i:397527 original size:19 final size:19
Alignment explanation
Indices: 397516--397575 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
397506 TATATGTTTT
*
397516 TTTCTAGATTATATATATA
1 TTTCTAAATTATATATATA
397535 TTTCTAAATTATATATATA
1 TTTCTAAATTATATATATA
* *
397554 --TATATA-TATATATATA
1 TTTCTAAATTATATATATA
397570 TTTCTA
1 TTTCTA
397576 CTTTTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 10 0.29
17 4 0.11
18 3 0.09
19 18 0.51
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTCTAAATTATATATATA
Found at i:397530 original size:2 final size:2
Alignment explanation
Indices: 397525--397570 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
397515 TTTTCTAGAT
* * *
397525 TA TA TA TA TA TT TC TA AA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
397566 TA TA T
1 TA TA T
397571 TTCTACTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:406896 original size:9 final size:9
Alignment explanation
Indices: 406882--406921 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
406872 TCGAGCTGAT
406882 TCGAATAAC
1 TCGAATAAC
406891 TCGAATAAC
1 TCGAATAAC
406900 TCG-ATAAC
1 TCGAATAAC
*
406908 TCAAATAAC
1 TCGAATAAC
406917 TCGAA
1 TCGAA
406922 CTATTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (9 bp):
TCGAATAAC
Found at i:406908 original size:17 final size:17
Alignment explanation
Indices: 406886--406920 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
406876 GCTGATTCGA
*
406886 ATAACTCGAATAACTCG
1 ATAACTCAAATAACTCG
406903 ATAACTCAAATAACTCG
1 ATAACTCAAATAACTCG
406920 A
1 A
406921 ACTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.09, T:0.23
Consensus pattern (17 bp):
ATAACTCAAATAACTCG
Found at i:420435 original size:38 final size:38
Alignment explanation
Indices: 420393--420483 Score: 96
Period size: 38 Copynumber: 2.3 Consensus size: 38
420383 TACAATAAAT
* * *
420393 TTAAAAAATATATAATATATCAAATACATTTAAAA-ACA
1 TTAAAAAATATATAAAAAAT-AAATAAATTTAAAATACA
*
420431 TTAAAACAA-ACATTAAAAAATAAATAAATTTAAAATACA
1 TTAAAA-AATATA-TAAAAAATAAATAAATTTAAAATACA
420470 TTAAAAAATTATAT
1 TTAAAAAA-TATAT
420484 TAAGATAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
38 23 0.53
39 18 0.42
40 2 0.05
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.31
Consensus pattern (38 bp):
TTAAAAAATATATAAAAAATAAATAAATTTAAAATACA
Found at i:420621 original size:12 final size:12
Alignment explanation
Indices: 420604--420711 Score: 91
Period size: 12 Copynumber: 9.3 Consensus size: 12
420594 ATAACATTCA
420604 AACAACAAAAAT
1 AACAACAAAAAT
420616 AACAACAAAAAT
1 AACAACAAAAAT
* *
420628 AGCAGCAAAAAT
1 AACAACAAAAAT
**
420640 ---AACAGTAA-
1 AACAACAAAAAT
*
420648 AACAACATTAAA-
1 AACAACA-AAAAT
420660 AACAACAAAAAT
1 AACAACAAAAAT
* * *
420672 AGCAATAAAAAC
1 AACAACAAAAAT
420684 AACAACAAAAAT
1 AACAACAAAAAT
*
420696 AACAGCAAAAAT
1 AACAACAAAAAT
420708 AACA
1 AACA
420712 CGAAAATAGC
Statistics
Matches: 76, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
9 5 0.07
11 7 0.09
12 64 0.84
ACGTcount: A:0.69, C:0.17, G:0.05, T:0.09
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:420643 original size:44 final size:44
Alignment explanation
Indices: 420590--420675 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
420580 AAAACGCATA
* *
420590 AAAAATAACATTCAAACAACA-AAAATAACAACAAAAATAGCAGC
1 AAAAATAACAGTAAAACAACATAAAA-AACAACAAAAATAGCAGC
*
420634 AAAAATAACAGTAAAACAACATTAAAAACAACAAAAATAGCA
1 AAAAATAACAGTAAAACAACATAAAAAACAACAAAAATAGCA
420676 ATAAAAACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 35 0.92
45 3 0.08
ACGTcount: A:0.67, C:0.16, G:0.05, T:0.12
Consensus pattern (44 bp):
AAAAATAACAGTAAAACAACATAAAAAACAACAAAAATAGCAGC
Found at i:420682 original size:44 final size:44
Alignment explanation
Indices: 420590--420687 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
420580 AAAACGCATA
* * *
420590 AAAAATAACATTCAAACAACAAAAATAACAACAAAAATAGCAGC
1 AAAAATAACAGTAAAACAACAAAAATAACAACAAAAATAGCAAC
* *
420634 AAAAATAACAGTAAAACAACATTAAA-AACAACAAAAATAGCAAT
1 AAAAATAACAGTAAAACAACA-AAAATAACAACAAAAATAGCAAC
*
420678 AAAAACAACA
1 AAAAATAACA
420688 ACAAAAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 44 0.94
45 3 0.06
ACGTcount: A:0.68, C:0.16, G:0.04, T:0.11
Consensus pattern (44 bp):
AAAAATAACAGTAAAACAACAAAAATAACAACAAAAATAGCAAC
Found at i:420782 original size:22 final size:22
Alignment explanation
Indices: 420726--420785 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
420716 AATAGCAATT
*
420726 AAAACAATAAAAAAATAACTCA
1 AAAACAGTAAAAAAATAACTCA
420748 AAAACAGTAAAAAAACATCAAC-C-
1 AAAACAGT-AAAAAA-AT-AACTCA
420771 AAAACAGTAAAAAAA
1 AAAACAGTAAAAAAA
420786 GCACCAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 1 0.03
22 13 0.38
23 14 0.41
24 3 0.09
25 3 0.09
ACGTcount: A:0.72, C:0.15, G:0.03, T:0.10
Consensus pattern (22 bp):
AAAACAGTAAAAAAATAACTCA
Found at i:421204 original size:26 final size:26
Alignment explanation
Indices: 421175--421226 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
421165 ATTATTAGAG
*
421175 TTATACAAGTTTATATTTTATTATTT
1 TTATACAAGTTGATATTTTATTATTT
** *
421201 TTATATTAGTTGATATTTTTTTATTT
1 TTATACAAGTTGATATTTTATTATTT
421227 GTTTGTATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (26 bp):
TTATACAAGTTGATATTTTATTATTT
Found at i:422367 original size:25 final size:25
Alignment explanation
Indices: 422331--422386 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
422321 TCCAAAAGTC
*
422331 TTTTTTTTTAAT-TGGTATTTGAGT
1 TTTTTTTTTAATATGATATTTGAGT
*
422355 TTATTTTTTTAATATGATATTTGTGT
1 TT-TTTTTTTAATATGATATTTGAGT
422381 TTTTTT
1 TTTTTT
422387 GTCCAATGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.50
26 12 0.43
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.70
Consensus pattern (25 bp):
TTTTTTTTTAATATGATATTTGAGT
Done.