Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 107 of 125
Found at i:32571724 original size:2 final size:2
Alignment explanation
Indices: 32571717--32571743 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32571707 GCTTTATACT
32571717 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32571744 TTGATATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32576384 original size:11 final size:11
Alignment explanation
Indices: 32576368--32576392 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32576358 TGTTTCCTTA
32576368 AACCCTAAACT
1 AACCCTAAACT
32576379 AACCCTAAACT
1 AACCCTAAACT
32576390 AAC
1 AAC
32576393 GTACAATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (11 bp):
AACCCTAAACT
Found at i:32583668 original size:29 final size:31
Alignment explanation
Indices: 32583631--32583700 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
32583621 GTCAGCAAAT
32583631 AATT-TTAAAATTA-TCTTTTAAAAT-ATAA
1 AATTATTAAAATTATTCTTTTAAAATAATAA
* *
32583659 AATTATTAAAATTATTTTTTTTGAAATAATAA
1 AATTATTAAAATTA-TTCTTTTAAAATAATAA
32583691 AATTATTAAA
1 AATTATTAAA
32583701 TAATTTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
28 4 0.11
29 9 0.25
31 9 0.25
32 14 0.39
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (31 bp):
AATTATTAAAATTATTCTTTTAAAATAATAA
Found at i:32583707 original size:31 final size:31
Alignment explanation
Indices: 32583646--32583707 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
32583636 TAAAATTATC
*
32583646 TTTTAAAATATAAAATTATTAAAATTATTTT
1 TTTTAAAATATAAAATTATTAAAATAATTTT
*
32583677 TTTTGAAATAATAAAATTATT-AAATAATTTT
1 TTTTAAAAT-ATAAAATTATTAAAATAATTTT
32583708 AATTTTCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 17 0.61
32 11 0.39
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
TTTTAAAATATAAAATTATTAAAATAATTTT
Found at i:32584946 original size:20 final size:22
Alignment explanation
Indices: 32584921--32584962 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
32584911 AAATAATTTT
32584921 AATAATTTT-AT-ATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
32584941 AATAATTTTAATAATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
32584963 TCATTTGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 2 0.10
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATAATTTTAATAATTTTAAAA
Found at i:32584950 original size:29 final size:31
Alignment explanation
Indices: 32584887--32584959 Score: 132
Period size: 29 Copynumber: 2.4 Consensus size: 31
32584877 ATTAAAATTA
32584887 TTTAATAATTTTATTATTTTAAAAAAATAAT
1 TTTAATAATTTTATTATTTTAAAAAAATAAT
32584918 TTTAATAATTTTA-TATTTT-AAAAAATAAT
1 TTTAATAATTTTATTATTTTAAAAAAATAAT
32584947 TTTAATAATTTTA
1 TTTAATAATTTTA
32584960 AAATCATTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 23 0.55
30 6 0.14
31 13 0.31
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
TTTAATAATTTTATTATTTTAAAAAAATAAT
Found at i:32584963 original size:20 final size:20
Alignment explanation
Indices: 32584912--32584968 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
32584902 ATTTTAAAAA
32584912 AATAATTTT--AATAATTTT
1 AATAATTTTAAAATAATTTT
32584930 -AT-ATTTTAAAAAATAATTTT
1 AATAATTTT--AAAATAATTTT
*
32584950 AATAATTTTAAAATCATTT
1 AATAATTTTAAAATAATTT
32584969 GCTGACATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
20 18 0.56
21 2 0.06
22 5 0.16
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
AATAATTTTAAAATAATTTT
Found at i:32593653 original size:26 final size:26
Alignment explanation
Indices: 32593624--32593680 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 26
32593614 TGCTTAATTG
32593624 ATTA-CTAGTTTTCGATTAAGAGCTCA
1 ATTAGCTAGTTTTC-ATTAAGAGCTCA
* *
32593650 ATTAGGTGTTGTTTTCATTAAGAGCTCA
1 ATTA-G-CTAGTTTTCATTAAGAGCTCA
32593678 ATT
1 ATT
32593681 CATGATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 4 0.15
28 15 0.58
29 7 0.27
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (26 bp):
ATTAGCTAGTTTTCATTAAGAGCTCA
Found at i:32603157 original size:24 final size:25
Alignment explanation
Indices: 32603130--32603176 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
32603120 TTTATAGCTA
*
32603130 GTCACTCAATTATTAAT-ATTATTT
1 GTCACTCAATTATCAATAATTATTT
* *
32603154 GTCATTTAATTATCAATAATTAT
1 GTCACTCAATTATCAATAATTAT
32603177 AAATAATCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (25 bp):
GTCACTCAATTATCAATAATTATTT
Found at i:32604820 original size:19 final size:19
Alignment explanation
Indices: 32604796--32604835 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32604786 AATAATATAT
* *
32604796 TAAATATTTTCCCATAAAA
1 TAAATATATTACCATAAAA
*
32604815 TAAATATATTAGCATAAAA
1 TAAATATATTACCATAAAA
32604834 TA
1 TA
32604836 TTTAGGCATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAATATATTACCATAAAA
Found at i:32605001 original size:31 final size:32
Alignment explanation
Indices: 32604960--32605035 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
32604950 AATTTATATA
* * *
32604960 ATTTAGTTTTATTATAAAATTAAATAA-TATT
1 ATTTAATTTTATTATAAAATAAAAAAAGTATT
* * *
32604991 ATTTCATTTTAAT-TACAATAAAAAAAGTATT
1 ATTTAATTTTATTATAAAATAAAAAAAGTATT
32605022 ATTTAATTTTATTA
1 ATTTAATTTTATTA
32605036 AAAGATGTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
30 10 0.29
31 25 0.71
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (32 bp):
ATTTAATTTTATTATAAAATAAAAAAAGTATT
Found at i:32605649 original size:12 final size:12
Alignment explanation
Indices: 32605634--32605685 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
32605624 AATGTTCACA
*
32605634 AACATGTTCATT
1 AACATGTTCATG
** *
32605646 AACAT-TAAACG
1 AACATGTTCATG
32605657 AACATGTTCATG
1 AACATGTTCATG
32605669 AACATGTTCATG
1 AACATGTTCATG
32605681 AACAT
1 AACAT
32605686 ATAATTAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
11 7 0.22
12 25 0.78
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (12 bp):
AACATGTTCATG
Found at i:32605666 original size:35 final size:36
Alignment explanation
Indices: 32605625--32605703 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
32605615 CATTTGTTTA
* *
32605625 ATGTTCACAAACATGTTCATTAACAT-TAAACGAAC
1 ATGTTCACAAACATGTTCATGAACATATAAACAAAC
** **
32605660 ATGTTCATGAACATGTTCATGAACATATAATTAAAC
1 ATGTTCACAAACATGTTCATGAACATATAAACAAAC
32605696 ATGTTCAC
1 ATGTTCAC
32605704 GTACAATGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 23 0.64
36 13 0.36
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (36 bp):
ATGTTCACAAACATGTTCATGAACATATAAACAAAC
Found at i:32610083 original size:3 final size:3
Alignment explanation
Indices: 32610075--32610114 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
32610065 GATCTTTGCC
*
32610075 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT A-T ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32610115 GTTTATTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:32610885 original size:19 final size:21
Alignment explanation
Indices: 32610861--32610900 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32610851 ATAATTGAAC
32610861 TTAAA-TTTT-AAAATAAAAA
1 TTAAATTTTTGAAAATAAAAA
32610880 TTAAATTTTTGAAAATAAAAA
1 TTAAATTTTTGAAAATAAAAA
32610901 ACTAGAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 4 0.21
21 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TTAAATTTTTGAAAATAAAAA
Found at i:32624411 original size:20 final size:20
Alignment explanation
Indices: 32624386--32624462 Score: 55
Period size: 20 Copynumber: 3.5 Consensus size: 20
32624376 ATTATATTTT
32624386 TGTTTTGGTGCTTTTTTTAC
1 TGTTTTGGTGCTTTTTTTAC
* *
32624406 TGTTTTTTTGCTGTTTATGTTTTTTTAC
1 TG---TTTTGGTG-CT-T-T-TTTT-AC
*
32624434 TGTTTTGGTGCTTTTTTTAT
1 TGTTTTGGTGCTTTTTTTAC
32624454 TGTTTTGGT
1 TGTTTTGGT
32624463 TGTTATTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
20 12 0.27
21 4 0.09
22 1 0.02
23 8 0.18
24 2 0.05
25 8 0.18
26 1 0.02
27 4 0.09
28 4 0.09
ACGTcount: A:0.05, C:0.06, G:0.19, T:0.69
Consensus pattern (20 bp):
TGTTTTGGTGCTTTTTTTAC
Found at i:32624428 original size:17 final size:18
Alignment explanation
Indices: 32624401--32624438 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
32624391 TGGTGCTTTT
*
32624401 TTTACTGTTTTTTTGCTG
1 TTTACTGTTTTTTTACTG
32624419 TTTA-TGTTTTTTTACTG
1 TTTACTGTTTTTTTACTG
32624436 TTT
1 TTT
32624439 TGGTGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.08, C:0.08, G:0.13, T:0.71
Consensus pattern (18 bp):
TTTACTGTTTTTTTACTG
Found at i:32624459 original size:28 final size:28
Alignment explanation
Indices: 32624400--32624459 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
32624390 TTGGTGCTTT
** * *
32624400 TTTTACTGTTTTTTTGCTGTTTATGTTT
1 TTTTACTGTTTTGGTGCTGTTTATATTG
* *
32624428 TTTTACTGTTTTGGTGCTTTTTTTATTG
1 TTTTACTGTTTTGGTGCTGTTTATATTG
32624456 TTTT
1 TTTT
32624460 GGTTGTTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.07, C:0.07, G:0.15, T:0.72
Consensus pattern (28 bp):
TTTTACTGTTTTGGTGCTGTTTATATTG
Found at i:32624471 original size:20 final size:19
Alignment explanation
Indices: 32624406--32624462 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 19
32624396 CTTTTTTTAC
* *
32624406 TGTTTTTTTGCTG-TTT-A
1 TGTTTTTTTACTGTTTTGG
32624423 TGTTTTTTTACTGTTTTGG
1 TGTTTTTTTACTGTTTTGG
*
32624442 TGCTTTTTTTATTGTTTTGG
1 TG-TTTTTTTACTGTTTTGG
32624462 T
1 T
32624463 TGTTATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 12 0.35
18 3 0.09
19 2 0.06
20 17 0.50
ACGTcount: A:0.05, C:0.05, G:0.19, T:0.70
Consensus pattern (19 bp):
TGTTTTTTTACTGTTTTGG
Found at i:32624479 original size:23 final size:21
Alignment explanation
Indices: 32624434--32624503 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 21
32624424 GTTTTTTTAC
* *
32624434 TGTTTTGG-TGCTTTTTTTAT
1 TGTTTTGGCTGCTATTTTTGT
* *
32624454 TGTTTTGGTTGTTATTTTCGTGT
1 TGTTTTGGCTGCTATTTT--TGT
*
32624477 TGTTTTTGCTGCTATTTTTGT
1 TGTTTTGGCTGCTATTTTTGT
32624498 TGTTTT
1 TGTTTT
32624504 TAATGTTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
20 8 0.20
21 16 0.39
23 17 0.41
ACGTcount: A:0.04, C:0.06, G:0.21, T:0.69
Consensus pattern (21 bp):
TGTTTTGGCTGCTATTTTTGT
Found at i:32624501 original size:44 final size:44
Alignment explanation
Indices: 32624436--32624545 Score: 114
Period size: 44 Copynumber: 2.5 Consensus size: 44
32624426 TTTTTTACTG
* * * **
32624436 TTTTGGTGCTTTTTTTATTGTTTTGGTTGTTATTTTCGTGTT-GT
1 TTTTGCTGCTATTTTTGTTGTTTTGAATGTTATTTT-GTGTTAGT
* * *
32624480 TTTTGCTGCTATTTTTGTTGTTTTTAATGTTATTTTTTGTTATT
1 TTTTGCTGCTATTTTTGTTGTTTTGAATGTTATTTTGTGTTAGT
* *
32624524 TTTTGCTGCTGTTTTGGTTGTT
1 TTTTGCTGCTATTTTTGTTGTT
32624546 ATTTTTGTTG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 4 0.07
44 51 0.93
ACGTcount: A:0.06, C:0.05, G:0.20, T:0.68
Consensus pattern (44 bp):
TTTTGCTGCTATTTTTGTTGTTTTGAATGTTATTTTGTGTTAGT
Found at i:32624571 original size:44 final size:43
Alignment explanation
Indices: 32624474--32624571 Score: 99
Period size: 44 Copynumber: 2.2 Consensus size: 43
32624464 GTTATTTTCG
* * **
32624474 TGTTGTTTTTGCTGCTATTTTTGTTGTTTTTAATGTTATTTTT
1 TGTTATTTTTGCTGCTATTTTGGTTGTTTTTAATGTTATTTGA
* * *
32624517 TGTTATTTTTTGCTGCTGTTTTGGTTGTTATTT-TTGTTGTTTGGA
1 TGTTA-TTTTTGCTGCTATTTTGGTTGTT-TTTAATGTTATTT-GA
32624562 TGTTATTTTT
1 TGTTATTTTT
32624572 TATGCGTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.09
44 33 0.73
45 8 0.18
ACGTcount: A:0.08, C:0.04, G:0.19, T:0.68
Consensus pattern (43 bp):
TGTTATTTTTGCTGCTATTTTGGTTGTTTTTAATGTTATTTGA
Found at i:32624768 original size:38 final size:38
Alignment explanation
Indices: 32624685--32624769 Score: 93
Period size: 38 Copynumber: 2.2 Consensus size: 38
32624675 TTAATATAAT
* * * *
32624685 TTTTTTAATGTATTTTAAATTTATTTATTTTTTAATGT
1 TTTTTTAATGTATTTTAAATGTATTTATATATTAATGA
32624723 TTGTTTTAATGT-TTTTAAATGTATTTGATATATTATAT-A
1 TT-TTTTAATGTATTTTAAATGTATTT-ATATATTA-ATGA
32624762 TTTTTTAA
1 TTTTTTAA
32624770 ATTTGTTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
38 21 0.52
39 17 0.43
40 2 0.05
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (38 bp):
TTTTTTAATGTATTTTAAATGTATTTATATATTAATGA
Found at i:32624775 original size:49 final size:48
Alignment explanation
Indices: 32624681--32624776 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 48
32624671 TATCTTAATA
* * * *
32624681 TAATTTTTTTAATGTATTTTAAATTTATTTATTTTTTAATGTTTGTTT
1 TAATTTTTTAAATGTATTTGAAATTTATATATTTTTTAATATTTGTTT
*
32624729 TAATGTTTTTAAATGTATTTGATATATTATATATTTTTTAA-ATTTGTT
1 TAAT-TTTTTAAATGTATTTGAAAT-TTATATATTTTTTAATATTTGTT
32624777 GTATGTAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
48 4 0.10
49 23 0.56
50 14 0.34
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (48 bp):
TAATTTTTTAAATGTATTTGAAATTTATATATTTTTTAATATTTGTTT
Found at i:32632286 original size:19 final size:19
Alignment explanation
Indices: 32632247--32632289 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
32632237 GTATAATAAA
* *
32632247 TTTTACAATTTTTAAGGAT
1 TTTTACAACTTTTAAAGAT
*
32632266 TTTTACAACTTTTAAATAT
1 TTTTACAACTTTTAAAGAT
32632285 TTTTA
1 TTTTA
32632290 TATATTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTACAACTTTTAAAGAT
Found at i:32636563 original size:11 final size:10
Alignment explanation
Indices: 32636540--32636573 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
32636530 TTGAACGTGA
32636540 ATAAATTTTT
1 ATAAATTTTT
32636550 ATAAATTGTTT
1 ATAAATT-TTT
*
32636561 ATAAATTTAT
1 ATAAATTTTT
32636571 ATA
1 ATA
32636574 TTTTCATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (10 bp):
ATAAATTTTT
Found at i:32637036 original size:13 final size:13
Alignment explanation
Indices: 32637018--32637043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32637008 AAAAGTTAAC
32637018 ATTTTTTAACTTT
1 ATTTTTTAACTTT
32637031 ATTTTTTAACTTT
1 ATTTTTTAACTTT
32637044 GTTGATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTTTAACTTT
Found at i:32644127 original size:16 final size:16
Alignment explanation
Indices: 32644106--32644136 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32644096 AATTGTAGAT
32644106 GAACTTTGATCACATA
1 GAACTTTGATCACATA
32644122 GAACTTTGATCACAT
1 GAACTTTGATCACAT
32644137 CTATCGATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (16 bp):
GAACTTTGATCACATA
Found at i:32648709 original size:19 final size:20
Alignment explanation
Indices: 32648672--32648709 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
32648662 TTTATATAAA
*
32648672 ATAAATAAATAATATAATAC
1 ATAAATAAATAATAAAATAC
*
32648692 ATAAA-AAATATTAAAATA
1 ATAAATAAATAATAAAATA
32648710 AATGTTTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAATAAATAATAAAATAC
Found at i:32652857 original size:30 final size:30
Alignment explanation
Indices: 32652823--32652975 Score: 144
Period size: 30 Copynumber: 5.2 Consensus size: 30
32652813 AAAAATGGGA
32652823 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
* *
32652853 TTTTGGTAAA--ATCGGGGTCGAAAATGG-AA-
1 TTTTGG-AAAGTTTAGGGGT--AAAATGGTAAT
*
32652882 TTTTGGAAAGTTCAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
*
32652912 TTTTGGTTAAA---TCGGGGTTAAAAATGG-AA-
1 TTTTGG--AAAGTTTAGGGG-T-AAAATGGTAAT
32652941 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
32652971 TTTTG
1 TTTTG
32652976 AATAATTTAG
Statistics
Matches: 99, Mismatches: 8, Indels: 32
0.71 0.06 0.23
Matches are distributed among these distances:
27 3 0.03
28 17 0.17
29 27 0.27
30 32 0.32
31 17 0.17
32 3 0.03
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (30 bp):
TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
Found at i:32652878 original size:59 final size:59
Alignment explanation
Indices: 32652778--32652975 Score: 303
Period size: 59 Copynumber: 3.4 Consensus size: 59
32652768 TTTAACTTTC
* *
32652778 AGGGGTAAAAATGG-AA-TTTTGGTGAAA-CTGGGGTTAAAAATGGGATTTTGGAAAGTTT
1 AGGGGT-AAAATGGTAATTTTTGGTAAAATC-GGGGTTAAAAATGGAATTTTGGAAAGTTT
** *
32652836 AGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTCGAAAATGGAATTTTGGAAAGTTC
1 AGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTT
*
32652895 AGGGGTAAAATGGTAATTTTTGGTTAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTT
32652954 AGGGGTAAAATGGTAATTTTTG
1 AGGGGTAAAATGGTAATTTTTG
32652976 AATAATTTAG
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
57 7 0.05
58 8 0.06
59 112 0.88
60 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.33
Consensus pattern (59 bp):
AGGGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTT
Found at i:32652962 original size:29 final size:27
Alignment explanation
Indices: 32652751--32652987 Score: 126
Period size: 29 Copynumber: 8.1 Consensus size: 27
32652741 TGGATGCCCG
* * *
32652751 GGGGTGAAATGGTAATTTT-TAACTTTCA
1 GGGGTAAAATGG-AATTTTGGAAATTT-A
*
32652779 GGGGTAAAAATGGAATTTTGGTGAAA-CT-
1 GGGGT-AAAATGGAATTTT-G-GAAATTTA
*
32652807 GGGGTTAAAAATGGGATTTTGGAAAGTTTA
1 GGGG-T-AAAATGGAATTTTGGAAA-TTTA
* *
32652837 GGGGTAAAATGGTAATTTTTGGTAAA-ATC
1 GGGGTAAAATGG-AA-TTTTGG-AAATTTA
*
32652866 GGGGTCGAAAATGGAATTTTGGAAAGTTCA
1 GGGGT--AAAATGGAATTTTGGAAA-TTTA
*
32652896 GGGGTAAAATGGTAATTTTTGGTTAAA--TC
1 GGGGTAAAATGG-AA-TTTTGG--AAATTTA
32652925 GGGGTTAAAAATGGAATTTTGGAAAGTTTA
1 GGGG-T-AAAATGGAATTTTGGAAA-TTTA
*
32652955 GGGGTAAAATGGTAATTTTTGAATAATTTA
1 GGGGTAAAATGG-AA-TTTTGGA-AATTTA
32652985 GGG
1 GGG
32652988 ACACGTGGCA
Statistics
Matches: 166, Mismatches: 16, Indels: 52
0.71 0.07 0.22
Matches are distributed among these distances:
27 7 0.04
28 40 0.24
29 50 0.30
30 45 0.27
31 21 0.13
32 3 0.02
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.34
Consensus pattern (27 bp):
GGGGTAAAATGGAATTTTGGAAATTTA
Found at i:32653280 original size:32 final size:32
Alignment explanation
Indices: 32653222--32653284 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
32653212 TTATCGAGCC
*
32653222 AAATTAAAAATAATTAAAAGTATGAAAAGGACT
1 AAATTAAAAATAATTAAAAGAATG-AAAGGACT
32653255 AAATT-AAAATAATTAAAA-AAGTGAAAGGAC
1 AAATTAAAAATAATTAAAAGAA-TGAAAGGAC
32653285 CAAACGTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 8 0.29
32 15 0.54
33 5 0.18
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (32 bp):
AAATTAAAAATAATTAAAAGAATGAAAGGACT
Found at i:32654755 original size:17 final size:17
Alignment explanation
Indices: 32654733--32654795 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
32654723 TCTTAAATGT
32654733 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAACAA
*
32654750 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAACAA
* **
32654766 ATTTAAAATTAATTCAA
1 ATTTAAATTTAAAACAA
*
32654783 ACTT-AATTTAAAA
1 ATTTAAATTTAAAA
32654796 TCCAAGTTGG
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAAATTTAAAACAA
Found at i:32654779 original size:27 final size:27
Alignment explanation
Indices: 32654736--32654788 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
32654726 TAAATGTATT
* *
32654736 TAAATTTAAAACAAATTTAAATTTAAA
1 TAAATTTAAAACAAATTCAAACTTAAA
**
32654763 TAAATTTAAAATTAATTCAAACTTAA
1 TAAATTTAAAACAAATTCAAACTTAA
32654789 TTTAAAATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAATTTAAAACAAATTCAAACTTAAA
Found at i:32657895 original size:25 final size:25
Alignment explanation
Indices: 32657867--32657918 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
32657857 TTTATAAAAA
*
32657867 ATAATTTAAGTG-TTATAAAAATGTT
1 ATAATATAAGTGTTTATAAAAA-GTT
**
32657892 ATAATATATTTGTTTATAAAAAGTT
1 ATAATATAAGTGTTTATAAAAAGTT
32657917 AT
1 AT
32657919 GCTAGAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (25 bp):
ATAATATAAGTGTTTATAAAAAGTT
Found at i:32660000 original size:6 final size:6
Alignment explanation
Indices: 32659989--32660021 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
32659979 ACTTTTTATA
32659989 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA
32660022 TACTCATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:32669817 original size:2 final size:2
Alignment explanation
Indices: 32669810--32669839 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32669800 TTTTGCTATC
32669810 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32669840 GCCTAGCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32674111 original size:35 final size:36
Alignment explanation
Indices: 32674072--32674142 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
32674062 AATTTTAAGT
32674072 ATTGTGTC-AAAAAAAACTATAAAT-TCTATAATAAA
1 ATTGT-TCAAAAAAAAACTATAAATGTCTATAATAAA
* *
32674107 ATTGTTCAAAAAAAAATTATAAATGTTTATAATAAA
1 ATTGTTCAAAAAAAAACTATAAATGTCTATAATAAA
32674143 TTTCGTTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
34 2 0.06
35 20 0.62
36 10 0.31
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (36 bp):
ATTGTTCAAAAAAAAACTATAAATGTCTATAATAAA
Found at i:32691026 original size:23 final size:24
Alignment explanation
Indices: 32690983--32691031 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
32690973 ATTTTTTTTT
* *
32690983 AAATTTCAAGTTTGAATTAAATTA
1 AAATTTCAAATTAGAATTAAATTA
32691007 AAATTTCAAATTAGAA-TAAATTA
1 AAATTTCAAATTAGAATTAAATTA
32691030 AA
1 AA
32691032 TATCAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATTTCAAATTAGAATTAAATTA
Found at i:32691138 original size:18 final size:18
Alignment explanation
Indices: 32691115--32691154 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
32691105 CTTTTATCTC
*
32691115 TCCTAAACAAAATTACTT
1 TCCTAAAAAAAATTACTT
32691133 TCCTAAAAAAAATTACTT
1 TCCTAAAAAAAATTACTT
32691151 TCCT
1 TCCT
32691155 CCAAATCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (18 bp):
TCCTAAAAAAAATTACTT
Found at i:32698489 original size:338 final size:338
Alignment explanation
Indices: 32697852--32702143 Score: 5465
Period size: 338 Copynumber: 12.9 Consensus size: 338
32697842 CAACTATGTA
*
32697852 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* * *
32697917 TTATAGAAAATATCGTCGTTTGTATGAACTTTTTTAAAAGAGAGAGAGAGAATTTATTCCACTTA
66 TTATAGAAAATATCGCCGTTTGTATGAAC-TCTTT-AAAGAGAGAGAGAGAATTTATCCCACTTA
* * * *
32697982 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGATCGGTTTTATAGAAAGTATCGTCCGTCG
129 ATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
* *
32698047 CATCAGTAAATAAATATTAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
194 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
*
32698112 TAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTA
259 TAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTG
*
32698177 CAAAGTATTTCACTT
324 CAAAGTGTTTCACTT
* * * * *
32698192 TTACAAAGT-ATTAACAGAAATTCCAAAAGAAATATCTAATGTTTTTAAAAGCAAATTCGCCGAT
1 TTGCAAAGTGA-TAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGAT
** * * *
32698256 TTTATAGAAAATATCGCCGTTTGTACAAACTGTTTATAGAGAGTA-AGAGAATTTATTCCACTTA
65 TTTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAG-AGAGAGAATTTATCCCACTTA
* * * * **
32698320 GTATCATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAAAAAATATCGTTTGTCC
129 ATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
32698385 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
194 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* * * * ** *
32698450 TAATCTCACAAATAAATATAATAAGAGAAATTCCAAAGTGTTTCGTTGCATGCAACCATGTATTG
259 TAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTG
* *
32698515 CAAAGTGTTTTATTT
324 CAAAGTGTTTCACTT
* * * * * *
32698530 TTGCAAAGTGATAAGAAAAATTCCGAAAGAAAAATCTAATGTATTTAAAAACAGATTCACTGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* * * *
32698595 TTATTGAAAATA-CTGCCATTTGTATGAACTCTTTAAAAAGAGATAGAGAATTTATCCCACTTAA
66 TTATAGAAAATATC-GCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAA
* * ** *
32698659 TATCATCAGATTTTTAAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATAATTCGTCCC
130 TATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCC
* * * *
32698724 GTCAGTAAATAAATATAAAATATTCTTTAAAATATAAATTCTCTCATTATACAATTAAATTTTTT
195 GTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTT
* * *
32698789 AATCTCACAAATAAATTTGATAAGATAAATTTCAAAGTGTTTCACTGTATGCAACTATGTATTGC
260 AATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGC
32698854 AAA--G--------
325 AAAGTGTTTCACTT
*
32698858 -TG---A-T-A-AA-AGAAATTCCAAAAGAAAAATCTAATGTCTTTAATAGCAGATTCGCCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* **
32698915 TTATAGAAAATATCGCCGTTTGTATGAACTAAGTAAAAAGAGAGAGAGAGAATTTATCCCACTTA
66 TTATAGAAAATATCGCCGTTTGTATGAACT--CTTTAAAGAGAGAGAGAGAATTTATCCCACTTA
* * * * **
32698980 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTAGTCGGTTTTATAGAAAGTATTGTTAGTCC
129 ATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
* * *
32699045 CGTTAGTAAATAAATATAAAATATTCTTTAAATGATAAATTATCTCATTTTACGATTAACTTTTT
194 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* * * * *
32699110 TAATTTCATAAGTAAATTTGATAAGAGAAATTTCAAATTGTTTCATTGCATGCAATTATGTATTG
259 TAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTG
32699175 CAAAGTGTTTCACTT
324 CAAAGTGTTTCACTT
* * *
32699190 TTGCAAAGTGATAAGAGAAATTCTAAAAGAAAAATCTAATGTTTTTAAAAGCAGATTCGTCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* * * **
32699255 TTATA-AAAATATCACCGTTTGTATAAACTCTTTAAAAAGAGAGAG-GAAATTTATTTCACTTAA
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAG-AATTTATCCCACTTAA
* * * * *
32699318 TATCATAAAATTTTTGAATTTTACAAGTAAGGTTGGCCGGTTTTATAGAAAATATCGTCCGTTCC
130 TATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCC
* * * *
32699383 GTTAGTAAATAAATATAAAATATTTTTTAAAAGATAAATTATCTCATTTTATAATTAATTTTTTT
195 GTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTT
* * * * * *
32699448 AATCTGAGAAGTAAATTTGATAGGAGAAATTTCAAAGTATTTCACTGCATGGAATTATGTATTGC
260 AATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGC
32699513 AAAGTGTTTCACTT
325 AAAGTGTTTCACTT
* **
32699527 TTGCAAAGTGATAAAAGAAATTTTAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* * * *
32699592 TTATTA-AAAATATCGTCGTTTGTATGAACTCTTTAAAAAGAGACAGAGAATTTATCTCACTTAA
66 TTA-TAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAA
* * * * *
32699656 TATCATTAGATTTTTAAATTTTACAAGAAAGGTTGATAGGTTTTATAGAAAGTATCATCCGTCCC
130 TATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCC
* * *
32699721 GTCACTAAATAAATATAAAATATTATTTAAAAGATAAATTATCTCATTTTACAATTAATTTTTTT
195 GTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTT
* * * * *
32699786 AATCTCATAAGTAAATTTTATAAGAGAAATTCCAAAGTATTACACTGCATGCAACTATGTATTGC
260 AATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGC
32699851 -AA-------A---
325 AAAGTGTTTCACTT
**
32699854 -T------TGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTTACCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* *
32699912 TTATAGAAAATATCGCTGTTTGTATGAATTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
* * *
32699977 ATTATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGGTTTATAGAAAGTATGGTCCGTCCCG
131 ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCCG
* *
32700042 TCAGTAAATAAATAT-AAATATTATTTAAAAGATAAATTATCTCATTTTACAATTAATTTTTTTA
196 TCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTA
* ** * *
32700106 ATCTCATAAGTAAATTTGATAATTGAAATTCCTAAGTGTTTCACTGCATGCAAC----TA-T---
261 ATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGCA
32700163 -A-----T-A---
326 AAGTGTTTCACTT
* ** * *
32700166 TTGCAAAGTGATAAGAGAAATTCTAAAAGAAAAATCTAATGTCTTTAAAAATAAATTCACCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
**
32700231 TTATAGAAAATATCGCTATTTGTATGAACTCTTTAAAAATAGAGAGAGAGAGAGAATTTATCCCA
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTT----A-A-AGAGAGAGAGAGAATTTATCCCA
* * ** * *
32700296 CTTAATATCATTATATTTTTGAATTATACAAGTTTGGTTGGTTGGTTTTATAGAAAGTATGGTCC
125 CTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCC
*
32700361 GTCCCGTCAGTAAATAAATATAAAATATTCTTTAAATGATAAATTATCTCATTTTACAATTAACT
190 GTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACT
* *
32700426 TTTTTAATCTCACAAGTAAATTTGATAAGAGAAA-TTCTAAAGTGTTTCAATACATGCAAC----
255 TTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTC-AAAGTGTTTCACTGCATGCAACTATG
32700486 ---T----A-TG--T-A---
319 TATTGCAAAGTGTTTCACTT
* * *
32700492 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAGGCATATTCGCTGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* *
32700557 TTATAGAAAATATTGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAGAGAGAATTTATCCTA
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTT----A-A-AGAGAGAGAGAGAATTTATCCCA
* * * * *
32700622 TTTATTATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTC-GATTTATAGAAAATATCGTCA
125 CTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCC
* * **
32700686 GTCCCGTTAGTAAAATAAATATAAAATATTCTTTAAATGATAAATTATCTCATTTTATGATTAAC
190 GTCCCGTCAGT-AAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAAC
* *
32700751 TTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGTATGCAATTATG
254 TTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATG
32700816 TATTGCAAAGTGTTTCACTT
319 TATTGCAAAGTGTTTCACTT
* *
32700836 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTATTTAAAAGCAGATTCGTCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
* * * *
32700901 TAATAAAAAATATCGCCGTTTGTATGAACTCTTTAAAAAGAGAGAGAGAATTTATCCAACTTAAT
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
* * * * * * * * **
32700966 ATCATTAAATTTTTAAATTTTACAAGTAATGTTGGCCAGTTTTATAGGAAGTATCATCTGTCTTG
131 ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCCG
* *
32701031 TCAGTAAATAAATATAAAATATTATTTAAAAGATAATTTATCTCATTTTACAATTAA-TGTTTTT
196 TCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACT-TTTTT
* * *
32701095 AATCTCACAAGTAAATTTGATACGAGAAATTCCAAAGTGTTTCACTGTATGCAAC----TA-T--
260 AATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGC
32701153 --A-----T-A---
325 AAAGTGTTTCACTT
* * * * *
32701156 TTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAATATAGTGTCTTTAAAAGTATATTCGCCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
** * *
32701221 TTATAGAAAATATTACCATTTGTATGAACTTTTTAAAAAGAGAGAGAGAGAGAGAGAATTTATCC
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTT------A-A-AGAGAGAGAGAGAATTTATCC
* * * * *
32701286 CACTTAATATTATTAGATTTTTGAATTTTACATGTAAGGTTGATTGGTTTTATAGGAAGTATCGT
123 CACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGT
* *
32701351 CCGTCCTGTCAGTAAATAAATATAAAATATTCTTTAAAAAATAAATTATCTCATTTTACAATTAA
188 CCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAA
* *
32701416 -TTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCTCTACATGCAACTAT
253 CTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTAT
32701480 GTATTGCAAAGTGTTTCACTT
318 GTATTGCAAAGTGTTTCACTT
* * **
32701501 TTGCAAAGTGATAAAAGAAATTTCAAAAGAAAAATCTAATGTCTTTAAAAGTTGATTCGCCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
*
32701566 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAAAATTTATCCCACTTAAT
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
* * *
32701631 ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAGAAAGTATCATCCGTCCTG
131 ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCCG
* *
32701696 TCAGTAAATAAATATAAAATATTCTTTAAAAAATAAATTATCTCATTTTACAATTAATTTTTTTA
196 TCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTA
* * * *
32701761 ATCTCACAAGTTAATTTGATAAGAGAAATTTCAAAGTGTTTCTCTACCTGCAACTATGTATTGCA
261 ATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGCA
32701826 AAGTGTTTCACTT
326 AAGTGTTTCACTT
* * * ** *
32701839 TTGCAAAGTGATAAAAGAAATTTCAAAAGAAAAATCTAATGCCTTTAAAAGTTGATTCGTCGATT
1 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
*
32701904 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAAAATTTATCCCACTTAAT
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
* * * * *
32701969 ATCATTAGATTTTTGAATTTTATAAGTAAGGTTGTTCGGTTTTATAGAAAGTATCATCCATCCTG
131 ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCCG
* * * *
32702034 TCAATAAATAAATATAAAATATTCTTCAAAAGATAAATTATTTAATTTTACAATTAACTTTTTTA
196 TCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTA
*
32702099 ATCTCACAAGCAAATTTGATAAGAGAAATTTCAAAGTGTTTCACT
261 ATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACT
32702144 TTTGCAAAGT
Statistics
Matches: 3499, Mismatches: 356, Indels: 196
0.86 0.09 0.05
Matches are distributed among these distances:
311 1 0.00
312 1 0.00
313 1 0.00
314 1 0.00
315 2 0.00
319 183 0.05
320 334 0.10
321 3 0.00
322 206 0.06
323 3 0.00
324 6 0.00
325 131 0.04
326 351 0.10
327 61 0.02
328 135 0.04
329 1 0.00
330 1 0.00
331 2 0.00
332 1 0.00
333 4 0.00
334 2 0.00
336 4 0.00
337 426 0.12
338 1263 0.36
339 58 0.02
340 136 0.04
341 2 0.00
342 1 0.00
344 91 0.03
345 88 0.03
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (338 bp):
TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATT
TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGAATTTATCCCACTTAAT
ATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCCG
TCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTA
ATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTGCA
AAGTGTTTCACTT
Found at i:32698905 original size:998 final size:979
Alignment explanation
Indices: 32696873--32702485 Score: 7159
Period size: 997 Copynumber: 5.7 Consensus size: 979
32696863 TGTTTCACTT
* *
32696873 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCATCGATT
1 TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
* * *
32696938 TTATAGAAAATATTGCCGTTTGCATTAACTCTTTAAAA-AGAGAGAGAGAATTTATCCCACTTAA
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAA
* * * *
32697002 TATTATTAGATTTTTTAATTTTACAAGT-AAGATTGGCCAGTTTTATAGAAAGTATAGTCCGTCC
131 TATCATTAGATTTTTTAATTTTACAAGTAAAG-TTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
* *
32697066 CGTCAGTAAATATATATAAAATATTCTTTAAAAGATAAATTATCTTATTTTACAATTAACTTTTT
195 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* * * *
32697131 TAATCTCACAAGTAAATTTAATAAAAGAAAATCCAAAGTGTTT-ACTGTATGCAACTATGTATTG
260 TAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGCAACTATGTATTG
32697195 CAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTTTA
325 CAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTTTA
* * * * * * * *
32697260 TAAAAAATATTGCCGTTTTTATTAACGCTTTAAAA-AGAGAGTGAAAATTTATCCCACTTAATAT
390 TAGAAAATATCGCCATTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAATAT
* * * ** * *
32697324 CATTAGATTTTTGAACTTTATAAGTAAGATTGGCCGGTTTTATAGAAAGTAACGTCCGTCCCGTC
455 CATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAGAAAATATCGTCCGTCCCGTC
* *
32697389 AGTAAATAAACATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACCTTTTTAAT
520 AGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTAAT
* *
32697454 CTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGA-ATGCAATTATGTATTGCAA
585 CTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACT-ACATGCAACTATGTATTGCAA
*
32697518 AGTG--TCACTTTTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCA
649 AGTGTTTCACTTTTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCA
*
32697581 GATTCGCCGATTTTATTGAAAATATTGCCGTCTGTATGAACTCTTTAAAAAGAGAGAGAGAGAGA
714 GATTCGCCGATTTTATTGAAAATA-TGCCGTTTGTATGAACTCTTT--AAA-A-AGAGAGAGAGA
* *
32697646 ATTTATCCCACTCAATATCATTAGATTTTTGAATTTTACAAGTAAGGTT-GACGGGTTTTATAGA
774 ATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTC-GGTTTTATAGA
* * *
32697710 AAGTATCATCCATCCCATCACTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTT
838 AAGTATCATCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTT
* * **
32697775 TACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTATTTCAATACA
903 TACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGTA
32697840 TGCAACTATGTA
968 TGCAACTATGTA
*
32697852 TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
1 TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
* * *
32697917 TTATAGAAAATATCGTCGTTTGTATGAACTTTTTTAAAAGAGAGAGAGAGAATTTATTCCACTTA
66 TTATAGAAAATATCGCCGTTTGTATGAAC-TCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTA
* *
32697982 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGATCGGTTTTATAGAAAGTATCGTCCGTCG
130 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
* *
32698047 CATCAGTAAATAAATATTAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
195 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* *
32698112 TAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGCATGCAACTATGTATTA
260 TAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGCAACTATGTATTG
* * *
32698177 CAAAGTATTTCACTTTTACAAAGTATTAACAGAAATTCCAAAAGAAATATCTAATGTTTTTAAAA
325 CAAAG-----------T-----G-A-TAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAA
* * ** * *
32698242 GCAAATTCGCCGATTTTATAGAAAATATCGCCGTTTGTACAAACTGTTT-ATAGAGAGTA-AGAG
372 GCAGATTCGCCGATTTTATAGAAAATATCGCCATTTGTATGAACTCTTTAAAAGAGAG-AGAGAG
* * *
32698305 AATTTATTCCACTTAGTATCATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAAA
436 AATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAGA
**
32698370 AAATATCGTTTGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTT
501 AAATATCGTCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTT
* * * ** *
32698435 TACAATTAACTTTTTTAATCTCACAAATAAATATAATAAGAGAAATTCCAAAGTGTTTCGTTGCA
566 TACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTACA
* * * *
32698500 TGCAACCATGTATTGCAAAGTGTTTTATTTTTGCAAAGTGATAAGAAAAATTCCGAAAGAAAAAT
631 TGCAACTATGTATTGCAAAGTGTTTCACTTTTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAAT
* * * * *
32698565 CTAATGTATTTAAAAACAGATTCACTGATTTTATTGAAAATACTGCCATTTGTATGAACTCTTTA
696 CTAATGTCTTTAAAAGCAGATTCGCCGATTTTATTGAAAATA-TGCCGTTTGTATGAACTCTTTA
* * *
32698630 AAAAGAGATAGAGAATTTATCCCACTTAATATCATCAGATTTTTAAATTTTACAAGTAAGGTTGG
760 AAAAGAGAGAGAGAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGG
* * *
32698695 TCGGTTTTATAGAAAGTATAATTCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAATATA
825 TCGGTTTTATAGAAAGTATCATCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATA
* * * * *
32698760 AATTCTCTCATTATACAATTAAATTTTTTAATCTCACAAATAAATTTGATAAGATAAATTTCAAA
890 AATTATCTCATTTTACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAA
32698825 GTGTTTCACTGTATGCAACTATGTA
955 GTGTTTCACTGTATGCAACTATGTA
* *
32698850 TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAATAGCAGATTCGCCGATT
1 TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
** *
32698915 TTATAGAAAATATCGCCGTTTGTATGAACTAAGTAAAAAGAGAGAGAGAGAATTTATCCCACTTA
66 TTATAGAAAATATCGCCGTTTGTATGAACT-CTTTAAAAGAGAGAGAGAGAATTTATCCCACTTA
* * **
32698980 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTAGTCGGTTTTATAGAAAGTATTGTTAGTCC
130 ATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCC
* * *
32699045 CGTTAGTAAATAAATATAAAATATTCTTTAAATGATAAATTATCTCATTTTACGATTAACTTTTT
195 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* * * * *
32699110 TAATTTCATAAGTAAATTTGATAAGAGAAATTTCAAATTGTTTCATTGCATGCAATTATGTATTG
260 TAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGC----A---A---
* * *
32699175 CAAAGTGTTTCACTTTTGCAAAGTGATAAGAGAAATTCTAAAAGAAAAATCTAATGTTTTTAAAA
315 C-TA-TG--T-A---TTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAA
* * * *
32699240 GCAGATTCGTCGATTTTATA-AAAATATCACCGTTTGTATAAACTCTTTAAAA-AGAGAGAG-GA
372 GCAGATTCGCCGATTTTATAGAAAATATCGCCATTTGTATGAACTCTTTAAAAGAGAGAGAGAG-
** * * **
32699302 AATTTATTTCACTTAATATCATAAAATTTTTGAATTTTACAAGTAAGGTTGGCCGGTTTTATAGA
436 AATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAGA
* * *
32699367 AAATATCGTCCGTTCCGTTAGTAAATAAATATAAAATATTTTTTAAAAGATAAATTATCTCATTT
501 AAATATCGTCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTT
* * * * * * * *
32699432 TATAATTAATTTTTTTAATCTGAGAAGTAAATTTGATAGGAGAAATTTCAAAGTATTTCACTGCA
566 TACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTACA
* * **
32699497 TGGAATTATGTATTGCAAAGTGTTTCACTTTTGCAAAGTGATAA-AAGAAATTTTAAAAGAAAAA
631 TGCAACTATGTATTGCAAAGTGTTTCACTTTTGCAAAGTGATAAGAA-AAATTCCAAAAGAAAAA
* *
32699561 TCTAATGTCTTTAAAAGCAGATTCGCCGATTTTATTAAAAATATCGTCGTTTGTATGAACTCTTT
695 TCTAATGTCTTTAAAAGCAGATTCGCCGATTTTATTGAAAATAT-GCCGTTTGTATGAACTCTTT
* * * *
32699626 AAAAAGAGACAGAGAATTTATCTCACTTAATATCATTAGATTTTTAAATTTTACAAGAAAGGTTG
759 AAAAAGAGAGAGAGAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTG
* * * *
32699691 ATAGGTTTTATAGAAAGTATCATCCGTCCCGTCACTAAATAAATATAAAATATTATTTAAAAGAT
824 GTCGGTTTTATAGAAAGTATCATCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGAT
* * * *
32699756 AAATTATCTCATTTTACAATTAATTTTTTTAATCTCATAAGTAAATTTTATAAGAGAAATTCCAA
889 AAATTATCTCATTTTACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAA
* * *
32699821 AGTATTACACTGCATGCAACTATGTA
954 AGTGTTTCACTGTATGCAACTATGTA
* * ***
32699847 TTGCAAATTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTTACCGATT
1 TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
* *
32699912 TTATAGAAAATATCGCTGTTTGTATGAATTCTTT-AAAGAGAGAGAGAGAATTTATCCCACTTAA
66 TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAA
* * * * *
32699976 TATTATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGGTTTATAGAAAGTATGGTCCGTCCC
131 TATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCC
* *
32700041 GTCAGTAAATAAATAT-AAATATTATTTAAAAGATAAATTATCTCATTTTACAATTAATTTTTTT
196 GTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTT
* ** * *
32700105 AATCTCATAAGTAAATTTGATAATTGAAATTCCTAAGTGTTTCACTGCATGCAACTATATATTGC
261 AATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGCAACTATGTATTGC
* ** * *
32700170 AAAGTGATAAGAGAAATTCTAAAAGAAAAATCTAATGTCTTTAAAAATAAATTCACCGATTTTAT
326 AAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTTTAT
*
32700235 AGAAAATATCGCTATTTGTATGAACTCTTTAAAAATAGAGAGAGAGAGAGAATTTATCCCACTTA
391 AGAAAATATCGCCATTTGTATGAACTCTTT---AA-A-AGAGAGAGAGAGAATTTATCCCACTTA
* * ** * *
32700300 ATATCATTATATTTTTGAATTATACAAGTTTGGTTGGTT-GGTTTTATAGAAAGTATGGTCCGTC
451 ATATCATTAGATTTTTGAATTTTACAAGTAAGGTT-GTTCGGTTTTATAGAAAATATCGTCCGTC
*
32700364 CCGTCAGTAAATAAATATAAAATATTCTTTAAATGATAAATTATCTCATTTTACAATTAACTTTT
515 CCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTT
* *
32700429 TTAATCTCACAAGTAAATTTGATAAGAGAAATTCTAAAGTGTTTCAATACATGCAACTATGTATT
580 TTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTACATGCAACTATGTATT
32700494 GCAAAGTG----A----T---AA--G---AG--AAATTCCAAAAGAAAAATCTAATGTCTTTAAA
645 GCAAAGTGTTTCACTTTTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAATCTAATGTCTTTAAA
* * * *
32700541 GGCATATTCGCTGATTTTATAGAAAATATTGCCGTTTGTATGAACTCTTTAAAGAGAGAGAGAGA
710 AGCAGATTCGCCGATTTTATTGAAAATA-TGCCGTTTGTATGAACTCTTT--A-A-A-A-AGAGA
* * * *
32700606 GAGAGAATTTATCCTATTTATTATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTC-GATTT
768 GAGAGAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTT
* * * * *
32700670 ATAGAAAATATCGTCAGTCCCGTTAGTAAAATAAATATAAAATATTCTTTAAATGATAAATTATC
833 ATAGAAAGTATCATCCGTCCCGTCAGT-AAATAAATATAAAATATTCTTTAAAAGATAAATTATC
**
32700735 TCATTTTATGATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTC
897 TCATTTTACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTC
*
32700800 ACTGTATGCAATTATGTA
962 ACTGTATGCAACTATGTA
*
32700818 TTGCAAAGTGTTTCACTTTTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTATTTA
1 TTGCAAA--G---------TG---A-T-A-AA-AGAAATTCCAAAAGAAAAATCTAATGTCTTTA
* *
32700883 AAAGCAGATTCGTCGATTTAATAAAAAATATCGCCGTTTGTATGAACTCTTTAAAA-AGAGAGAG
48 AAAGCAGATTCGTCGATTTTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAAGAGAGAGAG
* * * * * *
32700947 AGAATTTATCCAACTTAATATCATTAAATTTTTAAATTTTACAAGTAATGTTGGCCAGTTTTATA
113 AGAATTTATCCCACTTAATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATA
* * * ** * *
32701012 GGAAGTATCATCTGTCTTGTCAGTAAATAAATATAAAATATTATTTAAAAGATAATTTATCTCAT
178 GAAAGTATCGTCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCAT
*
32701077 TTTACAATTAA-TGTTTTTAATCTCACAAGTAAATTTGATACGAGAAATTCCAAAGTGTTTCACT
243 TTTACAATTAACT-TTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACT
* * * * *
32701141 GTATGCAACTATATATTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAATATAGTGTCTTTAAAA
307 GCATGCAACTATGTATTGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAA
* * ** *
32701206 GTATATTCGCCGATTTTATAGAAAATATTACCATTTGTATGAACTTTTTAAAAAGAGAGAGAGAG
372 GCAGATTCGCCGATTTTATAGAAAATATCGCCATTTGTATGAACTCTTT----A-A-A-AGAGAG
* *
32701271 AGAGAGAATTTATCCCACTTAATATTATTAGATTTTTGAATTTTACATGTAAGGTTGATT-GGTT
430 AGAGAGAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTG-TTCGGTT
* * * *
32701335 TTATAGGAAGTATCGTCCGTCCTGTCAGTAAATAAATATAAAATATTCTTTAAAAAATAAATTAT
494 TTATAGAAAATATCGTCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTAT
*
32701400 CTCATTTTACAATTAA-TTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTT
559 CTCATTTTACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTT
* *
32701464 CTCTACATGCAACTATGTATTGCAAAGTGTTTCACTTTTGCAAAGTGATAA-AAGAAATTTCAAA
624 CACTACATGCAACTATGTATTGCAAAGTGTTTCACTTTTGCAAAGTGATAAGAA-AAATTCCAAA
** *
32701528 AGAAAAATCTAATGTCTTTAAAAGTTGATTCGCCGATTTTATAGAAAATATCGCCGTTTGTATGA
688 AGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTTTATTGAAAATAT-GCCGTTTGTATGA
* *
32701593 ACTCTTTAAAGAGAGAGAGAAAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGT
752 ACTCTTTAAAAAGAGAGAGAGAATTTATCCCACTTAATATCATTAGATTTTTGAATTTTACAAGT
* *
32701658 AAGGTTGTTCGGTTTTATAGAAAGTATCATCCGTCCTGTCAGTAAATAAATATAAAATATTCTTT
817 AAGGTTGGTCGGTTTTATAGAAAGTATCATCCGTCCCGTCAGTAAATAAATATAAAATATTCTTT
* * *
32701723 AAAAAATAAATTATCTCATTTTACAATTAATTTTTTTAATCTCACAAGTTAATTTGATAAGAGAA
882 AAAAGATAAATTATCTCATTTTACAATTAACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAA
* * *
32701788 ATTTCAAAGTGTTTCTCTACCTGCAACTATGTATTGCAAAGTGTTTCA
947 ATTTCAAAGTG----T-T---T-C-AC--TGTA-TGC-AACTATGT-A
* * **
32701836 CTTTTGCAAAGTGATAAAAGAAATTTCAAAAGAAAAATCTAATGCCTTTAAAAGTTGATTCGTCG
1 ---TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCG
*
32701901 ATTTTATAGAAAATATCGCCGTTTGTATGAACTCTTT-AAAGAGAGAGAGAAAATTTATCCCACT
63 ATTTTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACT
* * * * * *
32701965 TAATATCATTAGATTTTTGAATTTTATAAGTAAGGTTGTTCGGTTTTATAGAAAGTATCATCCAT
128 TAATATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATAGAAAGTATCGTCCGT
* * * * *
32702030 CCTGTCAATAAATAAATATAAAATATTCTTCAAAAGATAAATTATTTAATTTTACAATTAACTTT
193 CCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTT
* *
32702095 TTTAATCTCACAAGCAAATTTGATAAGAGAAATTTCAAAGTG--T---T---T-C-AC--T-T-T
258 TTTAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGCAACTATGTAT
*
32702146 TGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATTT
323 TGCAAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTT
* *
32702211 TATAAAAAATATCGCCATTTGTATGAACTCTTTAAAA-AGAGAGAGAGAATTTATCTCACTTAAT
388 TATAGAAAATATCGCCATTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAAT
* *
32702275 ATCATTAGATTTATT-AATTTTACAAGTAAGGTTCG-TCGGTTTTATAAAAAATATCGTCTGTCC
453 ATCATTAGATTT-TTGAATTTTACAAGTAAGGTT-GTTCGGTTTTATAGAAAATATCGTCCGTCC
* * * *
32702338 CGTCAGTAAATAAATATAAAATATTTTTTAAAATATAAATTACCTCATTTTATAATTAACTTTTT
516 CGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTT
* * * * * * *
32702403 TAATTTCACAAATAAAGTTGATAAGAGAAATTCAAAATTGTTTCGCTACATGCAACTATGTTTTG
581 TAATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTACATGCAACTATGTATTG
* *
32702468 CAAAGTATTTCATTTTTG
646 CAAAGTGTTTCACTTTTG
32702486 TTTGAAGCAG
Statistics
Matches: 4059, Mismatches: 436, Indels: 275
0.85 0.09 0.06
Matches are distributed among these distances:
965 72 0.02
966 1 0.00
967 2 0.00
968 1 0.00
969 1 0.00
970 28 0.01
971 170 0.04
972 2 0.00
975 1 0.00
976 64 0.02
977 24 0.01
979 91 0.02
980 12 0.00
981 310 0.08
982 113 0.03
983 198 0.05
984 4 0.00
985 2 0.00
986 1 0.00
987 2 0.00
988 1 0.00
989 259 0.06
990 193 0.05
991 79 0.02
992 141 0.03
993 3 0.00
994 90 0.02
995 104 0.03
996 6 0.00
997 599 0.15
998 540 0.13
999 8 0.00
1000 280 0.07
1001 2 0.00
1002 100 0.02
1003 399 0.10
1004 30 0.01
1005 4 0.00
1006 2 0.00
1007 4 0.00
1008 3 0.00
1009 75 0.02
1010 4 0.00
1011 1 0.00
1012 2 0.00
1013 3 0.00
1015 4 0.00
1016 10 0.00
1017 5 0.00
1018 1 0.00
1019 1 0.00
1021 7 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (979 bp):
TTGCAAAGTGATAAAAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGTCGATT
TTATAGAAAATATCGCCGTTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAA
TATCATTAGATTTTTTAATTTTACAAGTAAAGTTGGTCGGTTTTATAGAAAGTATCGTCCGTCCC
GTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTT
AATCTCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTGCATGCAACTATGTATTGC
AAAGTGATAAGAGAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGATTCGCCGATTTTAT
AGAAAATATCGCCATTTGTATGAACTCTTTAAAAGAGAGAGAGAGAATTTATCCCACTTAATATC
ATTAGATTTTTGAATTTTACAAGTAAGGTTGTTCGGTTTTATAGAAAATATCGTCCGTCCCGTCA
GTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTAACTTTTTTAATC
TCACAAGTAAATTTGATAAGAGAAATTCCAAAGTGTTTCACTACATGCAACTATGTATTGCAAAG
TGTTTCACTTTTGCAAAGTGATAAGAAAAATTCCAAAAGAAAAATCTAATGTCTTTAAAAGCAGA
TTCGCCGATTTTATTGAAAATATGCCGTTTGTATGAACTCTTTAAAAAGAGAGAGAGAATTTATC
CCACTTAATATCATTAGATTTTTGAATTTTACAAGTAAGGTTGGTCGGTTTTATAGAAAGTATCA
TCCGTCCCGTCAGTAAATAAATATAAAATATTCTTTAAAAGATAAATTATCTCATTTTACAATTA
ACTTTTTTAATCTCACAAGTAAATTTGATAAGAGAAATTTCAAAGTGTTTCACTGTATGCAACTA
TGTA
Found at i:32712056 original size:62 final size:61
Alignment explanation
Indices: 32711977--32712129 Score: 150
Period size: 62 Copynumber: 2.5 Consensus size: 61
32711967 TTGTAAGATT
*
32711977 AATGAGAATTTTC-AAAAATTTTGAGGGGCCTAATTAAAATTTTCTAAAAACTTTAAGAGAGA
1 AATG-GAATTTTCTAAAAATTTTGAGGGACCTAATTAAAATTTTCTAAAAACTTTAAGAGA-A
** * * * * * *
32712039 AATGGAATTTTCTAAAAAAAATTGA-TGACCTAGTTAAAGTTTTTTAAAAATTTTAAGGGAA
1 AATGGAATTTTCT-AAAAATTTTGAGGGACCTAATTAAAATTTTCTAAAAACTTTAAGAGAA
**
32712100 AATCAAAATTTTCT-AAAATTTTGAGGGACC
1 AAT-GGAATTTTCTAAAAATTTTGAGGGACC
32712130 AAACCTCTTA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
60 8 0.11
61 16 0.22
62 40 0.55
63 9 0.12
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (61 bp):
AATGGAATTTTCTAAAAATTTTGAGGGACCTAATTAAAATTTTCTAAAAACTTTAAGAGAA
Found at i:32713752 original size:12 final size:12
Alignment explanation
Indices: 32713735--32713759 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32713725 AAAAGTGATC
32713735 TTTTTAGTTAAG
1 TTTTTAGTTAAG
32713747 TTTTTAGTTAAG
1 TTTTTAGTTAAG
32713759 T
1 T
32713760 CTATTTAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (12 bp):
TTTTTAGTTAAG
Found at i:32714979 original size:36 final size:33
Alignment explanation
Indices: 32714938--32715013 Score: 80
Period size: 36 Copynumber: 2.2 Consensus size: 33
32714928 AATTAATAAT
*
32714938 AAAATAAGAGTTATACAATATCCAAATAATAACAAC
1 AAAATAAGAGTAATACAATAT-C-AA-AATAACAAC
** * *
32714974 AAAATACTAGTAATATAATATCAAAATGACAAC
1 AAAATAAGAGTAATACAATATCAAAATAACAAC
32715007 AAAATAA
1 AAAATAA
32715014 TAGTGGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 14 0.41
34 2 0.06
35 1 0.03
36 17 0.50
ACGTcount: A:0.61, C:0.12, G:0.05, T:0.22
Consensus pattern (33 bp):
AAAATAAGAGTAATACAATATCAAAATAACAAC
Found at i:32723078 original size:29 final size:29
Alignment explanation
Indices: 32723016--32723070 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
32723006 TTTTATTACA
*
32723016 ATAATAATGTGTTTTATTTTGTTCATTTC
1 ATAATAATGGGTTTTATTTTGTTCATTTC
*
32723045 ATAATAGTGGGTTTTA-TTTGTT-ATTT
1 ATAATAATGGGTTTTATTTTGTTCATTT
32723071 TTCATAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 6 0.25
29 14 0.58
ACGTcount: A:0.24, C:0.04, G:0.15, T:0.58
Consensus pattern (29 bp):
ATAATAATGGGTTTTATTTTGTTCATTTC
Found at i:32728073 original size:3 final size:3
Alignment explanation
Indices: 32728065--32728091 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32728055 ATAAATTTCA
32728065 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
32728092 TTTAATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32729179 original size:2 final size:2
Alignment explanation
Indices: 32729172--32729205 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32729162 ATTTCAAACC
32729172 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32729206 AAATGTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32729373 original size:29 final size:28
Alignment explanation
Indices: 32729341--32729405 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
32729331 AGAAAGAATT
* *
32729341 AATTAAATTTTTAA-TGAAAATGTTTACTC
1 AATTAAATTTTAAAGTG-AAATATTTAC-C
*
32729370 AATTGAATTTTAAAGTTGAAATATTTACC
1 AATTAAATTTTAAAG-TGAAATATTTACC
32729399 AATTAAA
1 AATTAAA
32729406 CCTTTTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 19 0.63
30 9 0.30
31 2 0.07
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (28 bp):
AATTAAATTTTAAAGTGAAATATTTACC
Found at i:32736209 original size:24 final size:24
Alignment explanation
Indices: 32736141--32736201 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
32736131 GTTATTCTGG
*
32736141 TTCTGGGCTCGTAAGAGCTAACCG
1 TTCTGGGCTCGTAAGAGCTAACCA
*
32736165 TTTTGGGCTCGTAAGAGCTAACCA
1 TTCTGGGCTCGTAAGAGCTAACCA
32736189 TTCTGGGCTCGTA
1 TTCTGGGCTCGTA
32736202 TGGGCTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (24 bp):
TTCTGGGCTCGTAAGAGCTAACCA
Found at i:32737549 original size:42 final size:42
Alignment explanation
Indices: 32737487--32737570 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
32737477 AATTCTACTG
* * *
32737487 ATCAAGTTGTGCAGGGTGTACAGGATCAGCATGTGATGTCTC
1 ATCAAGGTGTGCAAGATGTACAGGATCAGCATGTGATGTCTC
*
32737529 ATCAAGGTGTGCAAGATGTACAGGATCAGCATGTGGTGTCTC
1 ATCAAGGTGTGCAAGATGTACAGGATCAGCATGTGATGTCTC
32737571 CTATAGTAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (42 bp):
ATCAAGGTGTGCAAGATGTACAGGATCAGCATGTGATGTCTC
Found at i:32746788 original size:20 final size:19
Alignment explanation
Indices: 32746750--32746788 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32746740 ATATAAAATG
*
32746750 TTAAAAAATTAAAATTCTT
1 TTAAAAAATTAAAAATCTT
*
32746769 TTAAAAATTTAGAAAATCTT
1 TTAAAAAATTA-AAAATCTT
32746789 AAAAATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (19 bp):
TTAAAAAATTAAAAATCTT
Found at i:32748363 original size:21 final size:20
Alignment explanation
Indices: 32748339--32748386 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 20
32748329 CTAGAACCCT
*
32748339 AAATCATAAATCCTAAATCTC
1 AAATC-TAAACCCTAAATCTC
32748360 AAATTCTAAACCCTAAATCTC
1 AAA-TCTAAACCCTAAATCTC
32748381 AAATCT
1 AAATCT
32748387 CAAGATTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATCTAAACCCTAAATCTC
Found at i:32753719 original size:34 final size:33
Alignment explanation
Indices: 32753682--32753745 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
32753672 ATTTCAATAA
32753682 AAAAATA-TTTATAATAAAACTTAAAATAAATTT
1 AAAAATATTTTATAATAAAA-TTAAAATAAATTT
* *
32753715 AAAAATATTTTATAATAATATTTAAATAAAT
1 AAAAATATTTTATAATAAAATTAAAATAAAT
32753746 ATTTATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 17 0.61
34 11 0.39
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (33 bp):
AAAAATATTTTATAATAAAATTAAAATAAATTT
Found at i:32753738 original size:12 final size:12
Alignment explanation
Indices: 32753685--32753751 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
32753675 TCAATAAAAA
32753685 AATATTTATAAT
1 AATATTTATAAT
* * *
32753697 AAAACTTAAAAT
1 AATATTTATAAT
32753709 AA-ATTTA-AA-
1 AATATTTATAAT
32753718 AATATTTTATAAT
1 AATA-TTTATAAT
32753731 AATATTTA-AAT
1 AATATTTATAAT
32753742 AAATATTTAT
1 -AATATTTAT
32753752 TTAATGTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 2 0.04
10 3 0.07
11 11 0.24
12 25 0.56
13 4 0.09
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (12 bp):
AATATTTATAAT
Found at i:32760294 original size:25 final size:25
Alignment explanation
Indices: 32760266--32760318 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
32760256 ACTTAATCAC
32760266 TTAACCACGATGGCTTCTAATGGCT
1 TTAACCACGATGGCTTCTAATGGCT
32760291 TTAACCACGATGGCTTCTAATGGCT
1 TTAACCACGATGGCTTCTAATGGCT
32760316 TTA
1 TTA
32760319 GATCGCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
TTAACCACGATGGCTTCTAATGGCT
Found at i:32788377 original size:1 final size:1
Alignment explanation
Indices: 32788371--32788396 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
32788361 CCCCACGTAT
32788371 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
32788397 TATTACAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:32788754 original size:28 final size:28
Alignment explanation
Indices: 32788685--32788755 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
32788675 TAAAATAGTA
*
32788685 AAAATATAATTTTATAATTTTTAAAATT
1 AAAATATAATTTTATAATTTTAAAAATT
*
32788713 -AAATCA-AATTTTTATTATTTTAAAAATT
1 AAAAT-ATAA-TTTTATAATTTTAAAAATT
*
32788741 AAAATATAAATTTAT
1 AAAATATAATTTTAT
32788756 CATAACAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
27 6 0.17
28 24 0.67
29 6 0.17
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (28 bp):
AAAATATAATTTTATAATTTTAAAAATT
Found at i:32795414 original size:23 final size:23
Alignment explanation
Indices: 32795384--32795484 Score: 100
Period size: 23 Copynumber: 4.3 Consensus size: 23
32795374 TGCTGGGTAA
32795384 CAGAGGGCACACAAAGTGCTAAT
1 CAGAGGGCACACAAAGTGCTAAT
*
32795407 CAGAGGGCACACGAAGTGCTAAT
1 CAGAGGGCACACAAAGTGCTAAT
32795430 AACAGAGGGCACACACAA-TGCTGAA-
1 --CAGAGGGCACACA-AAGTGCT-AAT
* * *
32795455 CAAAGGGCACGA-AACGTGCTAAA
1 CAGAGGGCAC-ACAAAGTGCTAAT
32795478 CAGAGGG
1 CAGAGGG
32795485 TGTCTAGTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
22 3 0.05
23 42 0.64
24 1 0.02
25 16 0.24
26 4 0.06
ACGTcount: A:0.40, C:0.22, G:0.29, T:0.10
Consensus pattern (23 bp):
CAGAGGGCACACAAAGTGCTAAT
Found at i:32795441 original size:25 final size:25
Alignment explanation
Indices: 32795381--32795444 Score: 105
Period size: 23 Copynumber: 2.6 Consensus size: 25
32795371 AAGTGCTGGG
32795381 TAACAGAGGGCACACAAAGTGCTAA
1 TAACAGAGGGCACACAAAGTGCTAA
*
32795406 T--CAGAGGGCACACGAAGTGCTAA
1 TAACAGAGGGCACACAAAGTGCTAA
32795429 TAACAGAGGGCACACA
1 TAACAGAGGGCACACA
32795445 CAATGCTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 22 0.63
25 13 0.37
ACGTcount: A:0.41, C:0.22, G:0.27, T:0.11
Consensus pattern (25 bp):
TAACAGAGGGCACACAAAGTGCTAA
Found at i:32795462 original size:48 final size:47
Alignment explanation
Indices: 32795356--32795464 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 47
32795346 CCGAAGTACT
* **
32795356 TAACAAAGGGCACATAAGTGCTGGGTAACAGAGGGCACACAAAGTGC
1 TAACAAAGGGCACAGAAGTGCTGAATAACAGAGGGCACACAAAGTGC
*
32795403 TAATCAGAGGGCACACGAAGTGCT-AATAACAGAGGGCACACACAA-TGC
1 TAA-CAAAGGGCACA-GAAGTGCTGAATAACAGAGGGCACACA-AAGTGC
32795451 TGAACAAAGGGCAC
1 T-AACAAAGGGCAC
32795465 GAAACGTGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
47 3 0.06
48 39 0.74
49 11 0.21
ACGTcount: A:0.39, C:0.21, G:0.28, T:0.12
Consensus pattern (47 bp):
TAACAAAGGGCACAGAAGTGCTGAATAACAGAGGGCACACAAAGTGC
Found at i:32795474 original size:48 final size:46
Alignment explanation
Indices: 32795359--32795484 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 46
32795349 AAGTACTTAA
* *
32795359 CAAAGGGCACATAAGTGCTGGGTAACAGAGGGCACACAAAGTGCTAAT
1 CAAAGGGCACACAAGTGCT--ATAACAGAGGGCACACAAAGTGCTAAT
*
32795407 CAGAGGGCACACGAAGTGCTAATAACAGAGGGCACACACAA-TGCTGAA-
1 CAAAGGGCACAC-AAGTGCT-ATAACAGAGGGCACACA-AAGTGCT-AAT
32795455 CAAAGGGCACGA-AACGTGCTA-AACAGAGGG
1 CAAAGGGCAC-ACAA-GTGCTATAACAGAGGG
32795485 TGTCTAGTGT
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
46 9 0.13
47 3 0.04
48 44 0.65
49 12 0.18
ACGTcount: A:0.39, C:0.21, G:0.29, T:0.11
Consensus pattern (46 bp):
CAAAGGGCACACAAGTGCTATAACAGAGGGCACACAAAGTGCTAAT
Found at i:32806980 original size:24 final size:24
Alignment explanation
Indices: 32806936--32806981 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
32806926 CTTTGACGAC
* *
32806936 TCTTCTTCTCGTTGCTGTTGTTGT
1 TCTTCTTCGCGTGGCTGTTGTTGT
32806960 TCTTCTTCGCGGTGGCT-TTGTT
1 TCTTCTTCGC-GTGGCTGTTGTT
32806982 TGATGGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.00, C:0.22, G:0.24, T:0.54
Consensus pattern (24 bp):
TCTTCTTCGCGTGGCTGTTGTTGT
Found at i:32807676 original size:16 final size:17
Alignment explanation
Indices: 32807657--32807697 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
32807647 TACATAATAT
32807657 ATAAAAATAGTAT-AAC
1 ATAAAAATAGTATAAAC
*
32807673 AT-AAAATATTATAAAC
1 ATAAAAATAGTATAAAC
*
32807689 TTAAAAATA
1 ATAAAAATA
32807698 AGTAGAGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 9 0.43
16 6 0.29
17 6 0.29
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (17 bp):
ATAAAAATAGTATAAAC
Found at i:32811877 original size:757 final size:755
Alignment explanation
Indices: 32809893--32812030 Score: 2606
Period size: 757 Copynumber: 2.8 Consensus size: 755
32809883 AAGGCACCAA
* * *
32809893 TCTTCAATTATACCCCTTG-CCAAACTAAATGCACTTGTTAGCATCAATCTACATTTTAATTTTG
1 TCTTCAATTAAAACCCTTGTTCAAACTAAATGCACTTGTTAGCATCAATCTAC-TTTTAA-TTTG
* * *
32809957 TATATGTAATTGGAATCTTGAAAATTTGAAACTGTCATCTGATAC-AACGTAATCATTTTTTGTA
64 TATTTGTAATTGGAATCTTGAAAAGTTGAAACTGTCATCT-A-ACAAACGTAATCAATTTTTGTA
* * * * * * * *
32810021 ACTTTTGTAGATATTTACAACGTGTCATATCCCTGTTAAATCCATCATTTGACATGGGTAGTTTT
127 ATTTTTGTAGAGATTTACAACGTGTCATATTCCAGCTAAACCCATCATTTGACA-CGGTA-ATTT
*** * * * * * * *
32810086 TGTGATTCTCTTTTAATTTTTTGTTTAACCTAAGTCGACACATATTAATCATTGACTAAACCTAT
190 CAAGATTCT-TTTTAGTTTTTTGTTCAACCCATGTCGA-ACGTATTAACCATTGGCTAAACCTAT
* ** * *
32810151 CATCTGATACAATAAGTTC-AA-TTTTTTTAAAAAAAAATTGAAAAACATTATTATTTTTAAATT
253 CATCTGATGCAATAAGTTCAAAGTTTTTTT----TTAAATTGTAAAACATTATTTTTTTTAAATT
* * * * *
32810214 CATATTTGACCCGTGTCACATCTTTATTGAAACTGTCGCCACAGTTTCACTTTGCATAAACAAAA
314 CATATTTGACACGTGTCACATCTTTATTAAAACCGTCGCCACGGTTTCACTTTGCATGAACAAAA
* * *
32810279 ATGTAAATTACTTTTCTAAATAATTTAAAAATTAAATTTCATTTTTTAAA-AAATTATAAATAAT
379 ATGTAAATTACTTTTCTAAATAATCTAAAAATTAAATTTCA-TTTTTAAATAATTTCTAAATAAT
* *
32810343 CTG--AAA-A-A-CA-G-A--T--TTTTAAGGTGATGTATTTATAACAAAAGAAAATCTAATTTT
443 CTGAAAAATAGATTATGCATTTCCTTTTAAGATGATGTATTTAT-A-AAAA-AAAATCTAATTTT
32810397 AAATATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAATCGTCGCGTAATAA
505 AAATATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAATCGTCGCGTAATAA
* * **
32810462 TAGTTGATGGATTAAGGGACCCTCTTCAGCATTCAAAATAGAATGACAAGGAACCCGGTGTGTTG
570 TAGTTGATGGATTGAGGGACCCTCTTCAGTATTCAAAATAGAATGACAAGGAACCCCATGTGTTG
* * * * * * *
32810527 GTTTGATGGCTTGGGTTCGAGTCGTGTTAATCATCTTACTATTAGAGTTTTGCATTCCTCTTGTA
635 GTCTGATGGCTTGGATTCGAGTCATGCTAATCATCTTACTATTAGAGTTTTACATTCATCTTCTA
* * **
32810592 ATTTACCAAGAAAATTGCAATCACAGGTAACTAAAACAAAACAATTCCAAATTTAG
700 ATTCACCAAGAAAAATGCAATCACAACTAACTAAAACAAAACAATTCCAAATTTAG
* * * * *
32810648 TCTTCAATTATAGCCCTTGTT-AAACTAAATGCTCTTGTTAGCATTAATCTACTTTTTAAATTTA
1 TCTTCAATTAAAACCCTTGTTCAAACTAAATGCACTTGTTAGCATCAATCTAC-TTTT-AATTTG
* *
32810712 TATTTGTAATTGGAATCTTGAAAAGTTAGAAACTGTCATCTAACAAAACATAATCAATTTTTATA
64 TATTTGTAATTGGAATCTTGAAAAGTT-GAAACTGTCATCTAAC-AAACGTAATCAATTTTTGTA
* * * * *
32810777 ATTTTTGCA-AGATTTACAACATATCACATTCCTA-CTAAACCCATCATTTGACACGGTAGTTTC
127 ATTTTTGTAGAGATTTACAACGTGTCATATTCC-AGCTAAACCCATCATTTGACACGGTAATTTC
* * * *
32810840 AAGATTCCTTTTTAGTTTTTTGTTCAACCCATGTCGCCACGTGTTAACTATTGGCTAAACTTATC
191 AAGATT-CTTTTTAGTTTTTTGTTCAACCCATGTCG-AACGTATTAACCATTGGCTAAACCTATC
* * *
32810905 ATCTGATGCAACAAGTTCAAAAG-TTTTTTTTAAATTGTAAAATATTATTTATTTTAAATTCATA
254 ATCTGATGCAATAAGTTC-AAAGTTTTTTTTTAAATTGTAAAACATTATTTTTTTTAAATTCATA
* * **
32810969 TTTGACCACGTGACACATCTTTATTAAAATCGTCGCCACGGTTTCACCATGCATGAACAAAAATG
318 TTTGA-CACGTGTCACATCTTTATTAAAACCGTCGCCACGGTTTCACTTTGCATGAACAAAAATG
* *
32811034 TAAATTACTTTTCTAAATAATCTGAAAATTAAATTTCATGTTTAAATAATTTCTAAATAATCTGA
382 TAAATTACTTTTCTAAATAATCTAAAAATTAAATTTCATTTTTAAATAATTTCTAAATAATCTGA
*
32811099 AAAATAGATTAT-CTGTTTCCTTTTAAGATGATGTATTTAT-AAAAAAAATCTAATTTTAAATAT
447 AAAATAGATTATGC-ATTTCCTTTTAAGATGATGTATTTATAAAAAAAAATCTAATTTTAAATAT
* *
32811162 TAAATTTTAAATTAGAAATGTTTTAAATTAAAAAGAAAACCATAATCGTTGCGTAATAATAGTTG
511 TAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAATCGTCGCGTAATAATAGTTG
* *
32811227 ATAGATTGAGGGACCCTCTTCAGTATTCAAAATAGAATGACAATGAACCCCATGTGTTGGTCTGA
576 ATGGATTGAGGGACCCTCTTCAGTATTCAAAATAGAATGACAAGGAACCCCATGTGTTGGTCTGA
* * *
32811292 TGGCTTGGATTCGAGTCATGCTAGTCA-CTTTACTGTTAGGGTTTTAC-TCTCATCTTCTAATTC
641 TGGCTTGGATTCGAGTCATGCTAATCATC-TTACTATTAGAGTTTTACAT-TCATCTTCTAATTC
* * * *
32811355 ACCAA-AAAAATGTAATGACAACTAACTAACACAAAATAATTCCAAATTTAG
704 ACCAAGAAAAATGCAATCACAACTAACTAAAACAAAACAATTCCAAATTTAG
* * *
32811406 TCTTTAA-TAAAACCCTT-TTCAAACTAAATGCACTTATTCGCATCAATCTACTTCTTAATTTGT
1 TCTTCAATTAAAACCCTTGTTCAAACTAAATGCACTTGTTAGCATCAATCTACTT-TTAATTTGT
* * * * * * *
32811469 TTTTGTAATTGAAATATTAAAAAGTTGAAACTCTCATCTAACAAGACGTAACCAATTATTGTAAT
65 ATTTGTAATTGGAATCTTGAAAAGTTGAAACTGTCATCTAACAA-ACGTAATCAATTTTTGTAAT
* *
32811534 TTTTGTAGAGATTTACAACGTGTCATATTCCAGCTAAACCCATCATTTCACACGATAATTTCAAG
129 TTTTGTAGAGATTTACAACGTGTCATATTCCAGCTAAACCCATCATTTGACACGGTAATTTCAAG
*
32811599 ATTGCTTTTTAGTTTTTGGTTCAACCCATGTCGTAACGTATTAACCATTGGCTAAACCTATCATC
194 ATT-CTTTTTAGTTTTTTGTTCAACCCATGTCG-AACGTATTAACCATTGGCTAAACCTATCATC
* * * *
32811664 TGATGCAATAAGTTCAAAGGTTTTTTTTTTAATTCTAAAACAATATTTTTTTTAAATTCATAATT
257 TGATGCAATAAGTTCAAA-GTTTTTTTTTAAATTGTAAAACATTATTTTTTTTAAATTCATATTT
* *
32811729 GATCACGTGTCACATCTTTATTAAAACCGTCGCCACGGTTGCACTTTGCATGAACAAAAATTTAA
321 GA-CACGTGTCACATCTTTATTAAAACCGTCGCCACGGTTTCACTTTGCATGAACAAAAATGTAA
* * *
32811794 ATTACTTTTCTAAATAATCTCAAAATTAAATTTCATTTTTAAATAATTTCTTAATAATATGAAAA
385 ATTACTTTTCTAAATAATCTAAAAATTAAATTTCATTTTTAAATAATTTCTAAATAATCTGAAAA
* * *
32811859 ATAGATTATGCATTTCCTTTTAAGATAATGTATTTATAACAAAAAAAAATATTTAATTTTAAACA
450 ATAGATTATGCATTTCCTTTTAAGATGATGTATTTAT----AAAAAAAA-ATCTAATTTTAAATA
* * * *
32811924 TTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAAACGCCACGTAAT-ATGAAT
510 TTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAATCGTCGCGTAATAAT-AGT
* *
32811988 TGATGGATTTG-GGGACCCTTTTCAGTATTCAAAATGGAATGAC
574 TGATGGA-TTGAGGGACCCTCTTCAGTATTCAAAATAGAATGAC
32812031 GGGGAAACTC
Statistics
Matches: 1190, Mismatches: 150, Indels: 78
0.84 0.11 0.06
Matches are distributed among these distances:
751 41 0.03
752 101 0.08
753 67 0.06
754 13 0.01
755 165 0.14
756 193 0.16
757 228 0.19
758 48 0.04
759 194 0.16
760 4 0.00
761 1 0.00
762 9 0.01
763 123 0.10
764 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (755 bp):
TCTTCAATTAAAACCCTTGTTCAAACTAAATGCACTTGTTAGCATCAATCTACTTTTAATTTGTA
TTTGTAATTGGAATCTTGAAAAGTTGAAACTGTCATCTAACAAACGTAATCAATTTTTGTAATTT
TTGTAGAGATTTACAACGTGTCATATTCCAGCTAAACCCATCATTTGACACGGTAATTTCAAGAT
TCTTTTTAGTTTTTTGTTCAACCCATGTCGAACGTATTAACCATTGGCTAAACCTATCATCTGAT
GCAATAAGTTCAAAGTTTTTTTTTAAATTGTAAAACATTATTTTTTTTAAATTCATATTTGACAC
GTGTCACATCTTTATTAAAACCGTCGCCACGGTTTCACTTTGCATGAACAAAAATGTAAATTACT
TTTCTAAATAATCTAAAAATTAAATTTCATTTTTAAATAATTTCTAAATAATCTGAAAAATAGAT
TATGCATTTCCTTTTAAGATGATGTATTTATAAAAAAAAATCTAATTTTAAATATTAAATTTTAA
ATTAGAAATATTTTAAATTAAAAAGAAAACCATAATCGTCGCGTAATAATAGTTGATGGATTGAG
GGACCCTCTTCAGTATTCAAAATAGAATGACAAGGAACCCCATGTGTTGGTCTGATGGCTTGGAT
TCGAGTCATGCTAATCATCTTACTATTAGAGTTTTACATTCATCTTCTAATTCACCAAGAAAAAT
GCAATCACAACTAACTAAAACAAAACAATTCCAAATTTAG
Found at i:32814341 original size:30 final size:29
Alignment explanation
Indices: 32814307--32814368 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
32814297 AAATAATTTT
32814307 AAAATTATTAAAATTATTTTTTAAAATATA
1 AAAATT-TTAAAATTATTTTTTAAAATATA
* *
32814337 AAAATTTTTAATTTATTTTTTAAAATATA
1 AAAATTTTAAAATTATTTTTTAAAATATA
32814366 AAA
1 AAA
32814369 TATAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 24 0.80
30 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
AAAATTTTAAAATTATTTTTTAAAATATA
Found at i:32815912 original size:21 final size:21
Alignment explanation
Indices: 32815894--32815934 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32815884 AAAATAAATT
32815894 AAAAATTTT-AT-ATTTTAAA
1 AAAAATTTTAATAATTTTAAA
*
32815913 AATAATTTTAATAATTTTAAA
1 AAAAATTTTAATAATTTTAAA
32815934 A
1 A
32815935 TCATTTACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AAAAATTTTAATAATTTTAAA
Found at i:32815923 original size:28 final size:28
Alignment explanation
Indices: 32815851--32815931 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
32815841 GAAATAGTTT
* * *
32815851 TTTTATAAAA-AAATTAAAAAATTCATA
1 TTTTAAAAAATAAATTAAAAATTTTATA
32815878 TTTTAAAAAATAAATTAAAAATTTTATA
1 TTTTAAAAAATAAATTAAAAATTTTATA
* *
32815906 TTTT-AAAAATAATTTTAATAATTTTA
1 TTTTAAAAAATAA-ATTAAAAATTTTA
32815932 AAATCATTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 17 0.36
28 30 0.64
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (28 bp):
TTTTAAAAAATAAATTAAAAATTTTATA
Found at i:32817208 original size:29 final size:30
Alignment explanation
Indices: 32817156--32817212 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
32817146 TTGCATGAAC
32817156 AAAAATGTAAATTACATTTCTAAATAATCT
1 AAAAATGTAAATTACATTTCTAAATAATCT
*
32817186 AAAAAT-TAAATTTCATGTT-TAAATAAT
1 AAAAATGTAAATTACAT-TTCTAAATAAT
32817213 TTTTAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (30 bp):
AAAAATGTAAATTACATTTCTAAATAATCT
Found at i:32817306 original size:15 final size:16
Alignment explanation
Indices: 32817288--32817321 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32817278 TTATAATTTT
32817288 AAATA-TTAAAATTAA
1 AAATATTTAAAATTAA
*
32817303 AAATATTTTAAATTAA
1 AAATATTTAAAATTAA
32817319 AAA
1 AAA
32817322 GAAAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATTTAAAATTAA
Found at i:32817326 original size:22 final size:24
Alignment explanation
Indices: 32817283--32817326 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
32817273 AAAAATTATA
**
32817283 ATTTTAAATATTAAAATTAAAAAT
1 ATTTTAAATATTAAAAAGAAAAAT
32817307 ATTTT-AA-ATTAAAAAGAAAA
1 ATTTTAAATATTAAAAAGAAAA
32817327 CCATAACCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
23 2 0.11
24 5 0.28
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
ATTTTAAATATTAAAAAGAAAAAT
Found at i:32818746 original size:790 final size:783
Alignment explanation
Indices: 32816181--32818758 Score: 3070
Period size: 790 Copynumber: 3.3 Consensus size: 783
32816171 TCATTATGCC
* * *
32816181 TTTCAAGATTCCCTTTT-AGTTTTTTGTTCAACCCATTTCGCCACGTGTTAACCATTGACTAAAT
1 TTTCAAGATT-CCTTTTAAG-TTTTTGTTCAACCCATGTCGCCACGTGTTAACCATTGGCTAAAC
* * * *
32816245 CTATTATCTGATGCGATAAGTTCAAAGGTTTTTTTTAAAATAATTTTAAAACATTATTTTTTTAA
64 CTATCATCTGATACGATAAGTTCAAAGGTTTTTTTTAAAAAAATTGTAAAACATTATTTTTTTAA
* ** * * *
32816310 ATTCACATTTGACCACGTGAAACAAT-TTTATTGAAACCGTCAACACAATTTCAACTTGCATGAA
129 ATTCATATTTGACCACGTGTCAC-ATCTTTATTGAAACCGTCACCACGATTTCACCTTGCATGAA
*
32816374 CAAAAATGTAAATTACTTTTCTAAATAATCTGAAAAATTAAATTTTAATGTTTAAATAATTTCTA
193 CAAAAATGTAAATTACTTTTCTAAATAATCT-AAAAATTAAA-TTTCATGTTTAAATAATTTCTA
32816439 AATAATCTATAAAATAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAA-TAAAAAAATCTA
256 AATAAT-T-TAAAATAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAACT-AAAAAATCTA
* *
32816503 TTTTTAAACATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAACCGCCACGT
318 ATTTTAATCATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAACCGCCACGT
* * * * * *
32816568 AATATGAGTTGATAGATTGGGAGACCCTCTTCAGCATGCAAAATGGAATTACGAGG-AACCTTGT
383 AATATGAGTTGATGGATTGGGAGGCCTTCTTCAGCATTCAAAATGGAATGACGAGGAAACC-CGT
* * * * * * *
32816632 GTGTTGGTCTAATGGCCAAGGTGTTCACCGCCTCAAGTGTAACCTGGATTCGAAG-CGCGCTAGT
447 GTGTTGGTCTGAT-ACCAGGGTG-TCACTGCCCCAAGTGTGACCTGGGTTCG-AGTCGCGCTAGT
* *
32816696 CACATTGCTATTTA-GTTTTGCCCT-CTACTTGTAATTCACCAAAAAAATGTAATGATAGGTAAC
509 CACCTTGCTA-TTAGGTTTTGCCCTCCT-CTTGTAATTCACCAAAAAAATGCAATGATAGGTAAC
* * * * *
32816759 TAAACCAAAATAATTACAAATTTAGTTTTCAATTATACCCTTTGTCAAACTAAAGGCACTTGTTA
572 TAAAACAAAATAATTCCAAATTTAATCTTCAATTATACCC-TTGTCAAACTAAATGCACTTGTTA
* * * * *
32816824 ACATCAATCTACTTCTTAATTTTGTATTTATAATTGGAATATTGAAAAGTTGAAACTGTCACCTG
636 GCATCAATCTACTTCTTAATTTTGTATATGTAATTGGAATATTGAAAAGTTGAAACTCTCATCTG
* * * *
32816889 ACAAGACTTAATCAATTTTTGTAATTTTTGCCA-ATATTTACATCGTGTCATATTCCTGCTAAAC
701 ACAAGACGTAATCAATTTTTGTAATTTTTG-TAGAGATTTACAACGTGTCATATTCCTGCTAAAC
32816953 CCATCATTTGACACGA-AG
765 CCATCATTTGACACGATAG
* * * *
32816971 ATTC-----T-CTTTTAATTTTTTGTTCAATCCATGTCGCCACGTGTTAACCATTGGCTAAACTT
1 TTTCAAGATTCCTTTTAAGTTTTTGTTCAACCCATGTCGCCACGTGTTAACCATTGGCTAAACCT
* * * *
32817030 ATCAT-TGATGCAATAAGTTTAAAGG--TTTTTTAAAACAAATTGTAAAACATTATTTTTTTATA
66 ATCATCTGATACGATAAGTTCAAAGGTTTTTTTTAAAA-AAATTGTAAAACATTATTTTTTTAAA
* * *
32817092 CTCATATTTGACCACGTCTCACATCTTTATTGAAACCATCACCACGATTTCACCTTGCATGAACA
130 TTCATATTTGACCACGTGTCACATCTTTATTGAAACCGTCACCACGATTTCACCTTGCATGAACA
* *
32817157 AAAATGTAAATTACATTTCTAAATAATCTAAAAATTAAATTTCATGTTTAAATAATTTTTAAATA
195 AAAATGTAAATTACTTTTCTAAATAATCTAAAAATTAAATTTCATGTTTAAATAATTTCTAAATA
* * * * *
32817222 ATCTAAAAAATATATTATGTGTTTCCTTTTAAGGTGACGTATTGATAACCAAAAAAT-T-A---T
260 AT-T-TAAAATAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAACTAAAAAATCTAATTTT
* * * * * *
32817282 AAT-TTTAAATATTAAAATTAAAAATATTTTAAATTAAAAAGAAAACCATAACCGTCGCGTAAAA
323 AATCATTAAAT-TTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAACCGCCACGT-AAT
* * * * * * *
32817346 AT-AATTGATGGATTGGG-GGACCTTCTGCAGCATTCAAAATAGAATGACGGGGAACCCCATTTG
386 ATGAGTTGATGGATTGGGAGG-CCTTCTTCAGCATTCAAAATGGAATGACGAGGAAACCCGTGTG
** * * * * * * *
32817409 TTGGTCTTGATAGTTAGAGTGATCA-TCACCCCAGGTCTGGCCTGTGTTCAAGTCGCGCTAGTCA
450 TTGGTC-TGATA-CCAGGGTG-TCACT-GCCCCAAGTGTGACCTGGGTTCGAGTCGCGCTAGTCA
* * * * *
32817473 TCTTGTTGTTAGAGTTTTGACCTCCTCTTGTAATTCACCAAGAAAAATGCAATGATAGGTAACCA
511 CCTTGCTATTAG-GTTTTGCCCTCCTCTTGTAATTCACCAA-AAAAATGCAATGATAGGTAACTA
* **
32817538 AAACAAAA-AATTCCAAATTTAGA-CTTCAATTATACCCCTTGTAAAACTAAATGTTCTTGTTAG
574 AAACAAAATAATTCCAAATTTA-ATCTTCAATTATA-CCCTTGTCAAACTAAATGCACTTGTTAG
* * * *
32817601 CATTAATCTACTTCTTAAATTTGTATATGTAATTGGAATATTGAAAAGTTAAAACTGCT-ATCTA
637 CATCAATCTACTTCTTAATTTTGTATATGTAATTGGAATATTGAAAAGTTGAAACT-CTCATCTG
* * *
32817665 ACAAGACGTAATCAATTTTTGTAATTTTT-TCGTGATTTACAACGTGTCATATTCCTGTTAAACC
701 ACAAGACGTAATCAATTTTTGTAATTTTTGTAGAGATTTACAACGTGTCATATTCCTGCTAAACC
* *
32817729 CATTATTTGACACGGTAG
766 CATCATTTGACACGATAG
* * * *
32817747 TTTCAAGATTCCTTTTTAATTTTTTGTTCAACCCATGTTGCCACGTG-TAACCATTTGCTAAACT
1 TTTCAAGATTCC-TTTTAAGTTTTTGTTCAACCCATGTCGCCACGTGTTAACCATTGGCTAAACC
* * * * * * *
32817811 TATCATCTAATGCCATAAATT-ACAA-GTCTTTTTTAAAAAAATTATAAAAAATTATTTTTTTTT
65 TATCATCTGATACGATAAGTTCA-AAGGTTTTTTTTAAAAAAATTGTAAAACATTA--TTTTTTT
* **
32817874 AAATTCATATTTGACCACGTGTCACATCTTTATTGAAACCGTCACCACGGTTTCACCTTATATGA
127 AAATTCATATTTGACCACGTGTCACATCTTTATTGAAACCGTCACCACGATTTCACCTTGCATGA
* * *
32817939 ACAAAAATATAAATTACTTTTCTAAATAATCTACAAATTAAATTTCATTTTTAAATAATTTCTAA
192 ACAAAAATGTAAATTACTTTTCTAAATAATCTAAAAATTAAATTTCATGTTTAAATAATTTCTAA
32818004 ATAATTTGAAAATTAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAACTAAAAAATCTAAT
257 ATAATTT-AAAA-TAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAACTAAAAAATCTAAT
* * *
32818069 TTTAATCATTAAATTTTAAATTAGAAATATTTTATATTAAGAAGAAAA-CAGTAACCACCACGTA
320 TTTAATCATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCA-TAACCGCCACGTA
* * * * *
32818133 ATATGAGTTGATGGATTGGGAGGCCTTATTTAGCATTCAAAATGGCATGACGTGGAAACCCGTGA
384 ATATGAGTTGATGGATTGGGAGGCCTTCTTCAGCATTCAAAATGGAATGACGAGGAAACCCGTGT
* * * * * *
32818198 GTTGATCTGATACCAGGGTGTCCACTGCCCCTAGTGTGATCTGGGTTTGAGTCGCACTAATCACC
449 GTTGGTCTGATACCAGGGTGT-CACTGCCCCAAGTGTGACCTGGGTTCGAGTCGCGCTAGTCACC
* * * ** *
32818263 TTGCTATTAGGGTTTTCCCCTCCTCTTGTAATTCATC-AAAAAATGCAATGACAACTAATTAAAA
513 TTGCTATTA-GGTTTTGCCCTCCTCTTGTAATTCACCAAAAAAATGCAATGATAGGTAACTAAAA
*
32818327 CAAAATAATTCCAAATTTAATCTTCAATTATACTCCTTGTCAAACTAAATGCACTTATTAGCATC
577 CAAAATAATTCCAAATTTAATCTTCAATTATAC-CCTTGTCAAACTAAATGCACTTGTTAGCATC
* * * *
32818392 AATCGACTTCTTAATTTTGTATCTGTAATTGAAATATTGAAAAGTTGAAACTCTCATTTGACAAG
641 AATCTACTTCTTAATTTTGTATATGTAATTGGAATATTGAAAAGTTGAAACTCTCATCTGACAAG
* *
32818457 ACGTAATCAAATTTTATAATTTTTGTAGAGATTTACAACGTGTCATATTCCTGCTAAACCCATCA
706 ACGTAATCAATTTTTGTAATTTTTGTAGAGATTTACAACGTGTCATATTCCTGCTAAACCCATCA
32818522 TTTGACACGATAG
771 TTTGACACGATAG
* * * *
32818535 TTTCAAGATTTCCTTTT-AGTTTTTGTTTAACCAAAGTCGCCACGTGTTAATCATTGGCTAAACC
1 TTTCAAGA-TTCCTTTTAAGTTTTTGTTCAACCCATGTCGCCACGTGTTAACCATTGGCTAAACC
*
32818599 TATCATCTGATATGATAAGTTCAAAGGTTTTTTTTAAAAAATAATTGTAAAACATTATTTTTTTT
65 TATCATCTGATACGATAAGTTCAAAGGTTTTTTTT-AAAAA-AATTGTAAAACATTA-TTTTTTT
* * * * * * *
32818664 AAATTCATACTTGACCACGTGTCACGTCTTTATTGAAACTGTCCCCATGGTTTCACCTTTCATGA
127 AAATTCATATTTGACCACGTGTCACATCTTTATTGAAACCGTCACCACGATTTCACCTTGCATGA
32818729 ACAAAAATGTAAATTACTTTTCTAAATAAT
192 ACAAAAATGTAAATTACTTTTCTAAATAAT
32818759 ATGATTTTAA
Statistics
Matches: 1513, Mismatches: 216, Indels: 118
0.82 0.12 0.06
Matches are distributed among these distances:
773 7 0.00
774 101 0.07
775 87 0.06
776 153 0.10
777 34 0.02
778 1 0.00
779 75 0.05
780 22 0.01
781 105 0.07
782 43 0.03
783 109 0.07
784 16 0.01
785 174 0.12
786 31 0.02
787 154 0.10
788 156 0.10
789 26 0.02
790 198 0.13
791 21 0.01
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (783 bp):
TTTCAAGATTCCTTTTAAGTTTTTGTTCAACCCATGTCGCCACGTGTTAACCATTGGCTAAACCT
ATCATCTGATACGATAAGTTCAAAGGTTTTTTTTAAAAAAATTGTAAAACATTATTTTTTTAAAT
TCATATTTGACCACGTGTCACATCTTTATTGAAACCGTCACCACGATTTCACCTTGCATGAACAA
AAATGTAAATTACTTTTCTAAATAATCTAAAAATTAAATTTCATGTTTAAATAATTTCTAAATAA
TTTAAAATAGATTATGTGTTTCCTTTTAAGGTGATGTATTTATAACTAAAAAATCTAATTTTAAT
CATTAAATTTTAAATTAGAAATATTTTAAATTAAAAAGAAAACCATAACCGCCACGTAATATGAG
TTGATGGATTGGGAGGCCTTCTTCAGCATTCAAAATGGAATGACGAGGAAACCCGTGTGTTGGTC
TGATACCAGGGTGTCACTGCCCCAAGTGTGACCTGGGTTCGAGTCGCGCTAGTCACCTTGCTATT
AGGTTTTGCCCTCCTCTTGTAATTCACCAAAAAAATGCAATGATAGGTAACTAAAACAAAATAAT
TCCAAATTTAATCTTCAATTATACCCTTGTCAAACTAAATGCACTTGTTAGCATCAATCTACTTC
TTAATTTTGTATATGTAATTGGAATATTGAAAAGTTGAAACTCTCATCTGACAAGACGTAATCAA
TTTTTGTAATTTTTGTAGAGATTTACAACGTGTCATATTCCTGCTAAACCCATCATTTGACACGA
TAG
Found at i:32820550 original size:22 final size:24
Alignment explanation
Indices: 32820523--32820568 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
32820513 ATTTTTTAAA
*
32820523 AATATTTAT-ATTATAT-TATTTT
1 AATATTAATAATTATATATATTTT
*
32820545 AATATTAATAATTTTATATATTTT
1 AATATTAATAATTATATATATTTT
32820569 TATTCATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 6 0.30
24 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
AATATTAATAATTATATATATTTT
Found at i:32820551 original size:16 final size:16
Alignment explanation
Indices: 32820529--32820566 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32820519 TAAAAATATT
*
32820529 TATATTATATTATTTTA
1 TATATTA-ATAATTTTA
32820546 -ATATTAATAATTTTA
1 TATATTAATAATTTTA
32820561 TATATT
1 TATATT
32820567 TTTATTCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATATTAATAATTTTA
Found at i:32821623 original size:22 final size:21
Alignment explanation
Indices: 32821597--32821666 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 21
32821587 GAGTATGAAA
32821597 TTAAATTGTATATTTTATTATT
1 TTAAATT-TATATTTTATTATT
*
32821619 TTAAAGTTATAATTTTATTATT
1 TTAAATTTAT-ATTTTATTATT
*
32821641 TTAATAGTTTATATTTTTATAATT
1 TTAA-A-TTTATA-TTTTATTATT
32821665 TT
1 TT
32821667 TAAAAAGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.07
22 21 0.51
23 2 0.05
24 15 0.37
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (21 bp):
TTAAATTTATATTTTATTATT
Found at i:32821658 original size:24 final size:21
Alignment explanation
Indices: 32821605--32821666 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 21
32821595 AATTAAATTG
32821605 TATATTTTATTATTTTAAAGT
1 TATATTTTATTATTTTAAAGT
32821626 TATAATTTTATTATTTTAATAGTT
1 TAT-ATTTTATTATTTTAA-AG-T
*
32821650 TATATTTTTATAATTTT
1 TATA-TTTTATTATTTT
32821667 TAAAAAGTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 3 0.08
22 15 0.42
23 3 0.08
24 15 0.42
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (21 bp):
TATATTTTATTATTTTAAAGT
Found at i:32824713 original size:41 final size:41
Alignment explanation
Indices: 32824636--32824725 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
32824626 TAAAAAACCT
* ***
32824636 AAATC-AAAGATAATTTGATCTAATTAAAGTTGAAAAGTCA
1 AAATCTAAAGATAATTTGATCTAAATAAAGGCCAAAAGTCA
* * * *
32824676 AAATTTAAAGATAATTTTATTTAAATAAAGGCCAAAAGTTA
1 AAATCTAAAGATAATTTGATCTAAATAAAGGCCAAAAGTCA
32824717 AAATCTAAA
1 AAATCTAAA
32824726 AACAATGTGG
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
40 4 0.10
41 36 0.90
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (41 bp):
AAATCTAAAGATAATTTGATCTAAATAAAGGCCAAAAGTCA
Found at i:32836208 original size:2 final size:2
Alignment explanation
Indices: 32836165--32836192 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32836155 TCTTTTTCAC
32836165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32836193 GACATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32836872 original size:17 final size:18
Alignment explanation
Indices: 32836846--32836881 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
32836836 CTAATTATTT
*
32836846 AAAATTTATT-ATTTAAA
1 AAAATATATTAATTTAAA
32836863 AAAATATATTAATTTAAA
1 AAAATATATTAATTTAAA
32836881 A
1 A
32836882 TTTTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATATATTAATTTAAA
Found at i:32837200 original size:2 final size:2
Alignment explanation
Indices: 32837193--32837246 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
32837183 TCCACTACCC
32837193 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32837235 TA TA TA TA TA TA
1 TA TA TA TA TA TA
32837247 AAACACCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32838078 original size:18 final size:18
Alignment explanation
Indices: 32838055--32838089 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32838045 AATTATAGTA
*
32838055 ATTAATTCAAATAATTAT
1 ATTAATTAAAATAATTAT
32838073 ATTAATTAAAATAATTA
1 ATTAATTAAAATAATTA
32838090 AATTGACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTAATTAAAATAATTAT
Found at i:32858220 original size:16 final size:16
Alignment explanation
Indices: 32858189--32858218 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32858179 TTAGTGTTAT
32858189 TTTTATTTTATTTTTG
1 TTTTATTTTATTTTTG
32858205 TTTTA-TTTATTTTT
1 TTTTATTTTATTTTT
32858219 TGCATTGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTATTTTATTTTTG
Found at i:32860615 original size:20 final size:20
Alignment explanation
Indices: 32860596--32860632 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
32860586 AATAAGTTAT
32860596 TTAAAATT-TTCAAAAATTA
1 TTAAAATTGTTCAAAAATTA
*
32860615 TTAAAATTGTTTAAAAAT
1 TTAAAATTGTTCAAAAAT
32860633 CAAAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (20 bp):
TTAAAATTGTTCAAAAATTA
Found at i:32861746 original size:20 final size:20
Alignment explanation
Indices: 32861701--32861757 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
32861691 TTTTTTTTCG
*
32861701 ATTTTTTA-AATAATTTCAATA
1 ATTTTTTATAA-AATTT-TATA
*
32861722 TTTTTTTATAAAATTTTATA
1 ATTTTTTATAAAATTTTATA
32861742 ATTTTTT-TAAAATTTT
1 ATTTTTTATAAAATTTT
32861758 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 9 0.28
20 9 0.28
21 12 0.38
22 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTTTTATAAAATTTTATA
Found at i:32861768 original size:13 final size:11
Alignment explanation
Indices: 32861735--32861764 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
32861725 TTTTATAAAA
*
32861735 TTTTATAATTT
1 TTTTAAAATTT
32861746 TTTTAAAATTT
1 TTTTAAAATTT
32861757 TTTTAAAA
1 TTTTAAAA
32861765 AATTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:32865034 original size:11 final size:11
Alignment explanation
Indices: 32865003--32865044 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
32864993 CCCAACTTGG
32865003 ATTTTAAATTA
1 ATTTTAAATTA
* *
32865014 AGTTTGAATTA
1 ATTTTAAATTA
*
32865025 ATTTTAAATTT
1 ATTTTAAATTA
32865036 A-TTTAAATT
1 ATTTTAAATT
32865045 TAAATTTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
ATTTTAAATTA
Found at i:32865044 original size:17 final size:17
Alignment explanation
Indices: 32865005--32865066 Score: 74
Period size: 17 Copynumber: 3.8 Consensus size: 17
32864995 CAACTTGGAT
*
32865005 TTTAAA-TTAAGTTTGA
1 TTTAAATTTAAATTTGA
* *
32865021 ATTAATTTTAAATTT-A
1 TTTAAATTTAAATTTGA
*
32865037 TTTAAATTTAAATTTGT
1 TTTAAATTTAAATTTGA
32865054 TTTAAATTTAAAT
1 TTTAAATTTAAAT
32865067 ACATTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
16 18 0.47
17 20 0.53
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTAAATTTGA
Found at i:32865047 original size:22 final size:22
Alignment explanation
Indices: 32865003--32865044 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32864993 CCCAACTTGG
*
32865003 ATTTTAAATTAAGTTTGAATTA
1 ATTTTAAATTAAGTTTAAATTA
*
32865025 ATTTTAAATTTA-TTTAAATT
1 ATTTTAAATTAAGTTTAAATT
32865045 TAAATTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTTTAAATTAAGTTTAAATTA
Found at i:32865050 original size:27 final size:27
Alignment explanation
Indices: 32865009--32865091 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 27
32864999 TTGGATTTTA
* *
32865009 AATTAAGTTTGAATTAATTTTAAATTT
1 AATTAAATTTAAATTAATTTTAAATTT
* **
32865036 ATTTAAATTTAAATTTGTTTTAAATTT
1 AATTAAATTTAAATTAATTTTAAATTT
* * * * *
32865063 AAATACATTTAAAATAATTTGAAACTT
1 AATTAAATTTAAATTAATTTTAAATTT
32865090 AA
1 AA
32865092 ACTTAAAATT
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (27 bp):
AATTAAATTTAAATTAATTTTAAATTT
Found at i:32865075 original size:16 final size:16
Alignment explanation
Indices: 32865022--32865075 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
32865012 TAAGTTTGAA
* *
32865022 TTAATTTTAAATTTAT
1 TTAAATTTAAATTCAT
**
32865038 TTAAATTTAAATTTGTT
1 TTAAATTTAAA-TTCAT
*
32865055 TTAAATTTAAATACAT
1 TTAAATTTAAATTCAT
32865071 TTAAA
1 TTAAA
32865076 ATAATTTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
TTAAATTTAAATTCAT
Found at i:32865876 original size:27 final size:28
Alignment explanation
Indices: 32865824--32865876 Score: 83
Period size: 27 Copynumber: 1.9 Consensus size: 28
32865814 AAATATACTT
32865824 ATATTATAATAAATTTTTATTAATAATA
1 ATATTATAATAAATTTTTATTAATAATA
32865852 ATATTAGTAA-AAA-TTTTATTAATAA
1 ATATTA-TAATAAATTTTTATTAATAA
32865877 ATGGAGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 12 0.50
28 9 0.38
29 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (28 bp):
ATATTATAATAAATTTTTATTAATAATA
Found at i:32867010 original size:30 final size:30
Alignment explanation
Indices: 32866974--32867030 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32866964 AGATTGTTCA
32866974 AAAATTATA-TTTTAACCCTAAAACTTTTTG
1 AAAATTATATTTTTAACCCT-AAACTTTTTG
*
32867004 AAAATTATATTTTTACCCCTAAACTTT
1 AAAATTATATTTTTAACCCTAAACTTT
32867031 CCAAAATCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (30 bp):
AAAATTATATTTTTAACCCTAAACTTTTTG
Found at i:32867046 original size:29 final size:28
Alignment explanation
Indices: 32867012--32867379 Score: 89
Period size: 30 Copynumber: 12.4 Consensus size: 28
32867002 TGAAAATTAT
*
32867012 ATTTTTACCCCTAAACTTTCCAAAATCCC
1 ATTTTTACCCCT-AACTTTCCAAAATACC
* *
32867041 ATTTTTTTAACCCTGA-TTTCACCAAAAATTACC
1 A--TTTTTACCCCTAACTTT--CC-AAAA-TACC
*
32867074 A-TTTTACCCTCAAACTTTCCAAAAT-CC
1 ATTTTTACCC-CTAACTTTCCAAAATACC
*
32867101 TATTTTTTTAACCCC-GA-TTTCACCAAAAATTACC
1 -A--TTTTT-ACCCCTAACTTT--CC-AAAA-TACC
* *
32867135 A-TTTTACCCCCAAACTTTCCAAAATCCC
1 ATTTTTA-CCCCTAACTTTCCAAAATACC
* * *
32867163 ATTTTTAACCCTGATTTTACCAAAAATTACC
1 ATTTTTACCCCTAACTTT-CC-AAAA-TACC
* *
32867194 A-TTTTACCCTCGAACTTTCCAAAATTCC
1 ATTTTTACCC-CTAACTTTCCAAAATACC
* * *
32867222 ATTTTTAACTCTGA-TTTCACCAAAAATTACC
1 ATTTTTACCCCTAACTTT--CC-AAAA-TACC
* *
32867253 A-TTTTACCCTTAAACTTTCCAAAA-CCC
1 ATTTTTACCCCT-AACTTTCCAAAATACC
* * *
32867280 TATTTTTA-GCCTCGATTTTACCAAAATTACC
1 -ATTTTTACCCCT-AACTTT-CCAAAA-TACC
* ** * *
32867311 -GTTTTACCTGTAAAGTTTCCAAAATTCC
1 ATTTTTACCCCT-AACTTTCCAAAATACC
*
32867339 ATTTTTGA-CCCTAA-TTTCAACAAAAATTCC
1 ATTTTT-ACCCCTAACTTTC--C-AAAATACC
32867369 ATTTTTACCCC
1 ATTTTTACCCC
32867380 CGAAAGTCAA
Statistics
Matches: 248, Mismatches: 46, Indels: 89
0.65 0.12 0.23
Matches are distributed among these distances:
27 11 0.04
28 31 0.12
29 69 0.28
30 70 0.28
31 38 0.15
32 21 0.08
33 6 0.02
34 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (28 bp):
ATTTTTACCCCTAACTTTCCAAAATACC
Found at i:32867047 original size:30 final size:30
Alignment explanation
Indices: 32867013--32867173 Score: 72
Period size: 29 Copynumber: 5.3 Consensus size: 30
32867003 GAAAATTATA
32867013 TTTTTACCCCTAAACTTTCCAAAATCCCATT
1 TTTTTACCCCTAAACTTTCCAAAATCCCA-T
* * *
32867044 TTTTTAACCCT-GA-TTTCACCAAAAATTACCA-
1 TTTTTACCCCTAAACTTT--CC-AAAA-TCCCAT
*
32867075 -TTTTA-CCCTCAAACTTTCCAAAATCCTATT
1 TTTTTACCCCT-AAACTTTCCAAAATCCCA-T
* *
32867105 TTTTTAACCCC--GA-TTTCACCAAAAATTACCA-
1 TTTTT-ACCCCTAAACTTT--CC-AAAA-TCCCAT
*
32867136 -TTTTACCCCCAAACTTTCCAAAATCCCAT
1 TTTTTACCCCTAAACTTTCCAAAATCCCAT
*
32867165 TTTTAACCC
1 TTTTTACCC
32867174 TGATTTTACC
Statistics
Matches: 97, Mismatches: 12, Indels: 43
0.64 0.08 0.28
Matches are distributed among these distances:
28 7 0.07
29 23 0.24
30 22 0.23
31 20 0.21
32 15 0.15
33 10 0.10
ACGTcount: A:0.32, C:0.31, G:0.01, T:0.36
Consensus pattern (30 bp):
TTTTTACCCCTAAACTTTCCAAAATCCCAT
Found at i:32867069 original size:61 final size:59
Alignment explanation
Indices: 32867014--32867379 Score: 447
Period size: 59 Copynumber: 6.2 Consensus size: 59
32867004 AAAATTATAT
32867014 TTTTACCCCTAAACTTTCCAAAATCCCATTTTTTTAACCCTGATTTCACCAAAAATTACCA
1 TTTTACCCCTAAACTTTCCAAAATCCCA--TTTTTAACCCTGATTTCACCAAAAATTACCA
* *
32867075 TTTTA-CCCTCAAACTTTCCAAAATCCTATTTTTTTAACCCCGATTTCACCAAAAATTACCA
1 TTTTACCCCT-AAACTTTCCAAAATCCCA--TTTTTAACCCTGATTTCACCAAAAATTACCA
* *
32867136 TTTTACCCCCAAACTTTCCAAAATCCCATTTTTAACCCTGATTTTACCAAAAATTACCA
1 TTTTACCCCTAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
* * *
32867195 TTTTA-CCCTCGAACTTTCCAAAATTCCATTTTTAACTCTGATTTCACCAAAAATTACCA
1 TTTTACCCCT-AAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
* * * *
32867254 TTTTACCCTTAAACTTTCCAAAA-CCCTATTTTT-AGCCTCGATTTTACC-AAAATTACCG
1 TTTTACCCCTAAACTTTCCAAAATCCC-ATTTTTAACCCT-GATTTCACCAAAAATTACCA
** * * * * *
32867312 TTTTACCTGTAAAGTTTCCAAAATTCCATTTTTGACCCTAATTTCAACAAAAATT-CCA
1 TTTTACCCCTAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
32867370 TTTTTACCCC
1 -TTTTACCCC
32867380 CGAAAGTCAA
Statistics
Matches: 266, Mismatches: 29, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
58 51 0.19
59 129 0.48
60 7 0.03
61 76 0.29
62 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (59 bp):
TTTTACCCCTAAACTTTCCAAAATCCCATTTTTAACCCTGATTTCACCAAAAATTACCA
Found at i:32867275 original size:30 final size:29
Alignment explanation
Indices: 32867123--32867276 Score: 97
Period size: 30 Copynumber: 5.2 Consensus size: 29
32867113 CCCGATTTCA
**
32867123 CCAAAAATTACCATTTTACCCCCAAACTTT
1 CCAAAAATTACCATTTTA-CCCTTAACTTT
* * *
32867153 CC-AAAA-TCCCATTTTTAACCC-TGATTTT
1 CCAAAAATTACCA-TTTT-ACCCTTAACTTT
*
32867181 ACCAAAAATTACCATTTTACCCTCGAACTTT
1 -CCAAAAATTACCATTTTACCCT-TAACTTT
* *
32867212 CC-AAAATT-CCATTTTTA-ACTCTGA-TTT
1 CCAAAAATTACCA-TTTTACCCT-TAACTTT
32867239 CACCAAAAATTACCATTTTACCCTTAAACTTT
1 --CCAAAAATTACCATTTTACCCTT-AACTTT
32867271 CCAAAA
1 CCAAAA
32867277 CCCTATTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
27 3 0.03
28 15 0.16
29 30 0.31
30 31 0.32
31 14 0.15
32 3 0.03
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.34
Consensus pattern (29 bp):
CCAAAAATTACCATTTTACCCTTAACTTT
Found at i:32871616 original size:58 final size:55
Alignment explanation
Indices: 32871554--32871839 Score: 248
Period size: 58 Copynumber: 4.9 Consensus size: 55
32871544 ATAAACGATA
* * * *
32871554 AAATCGGGGTGAAAAATGGGACTTTTGGATACCCGAGGGCAAAATGGTAATTTTGGTG
1 AAATCGGGGT-AAAAAT-GGAATTTTGGA-AACTGAGGGTAAAATGGTAATTTTGGTG
* * * *
32871612 AAATCGGGGTTAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTGATTTTTGGTG
1 AAATCGGGGTAAAAATGGAATTTTGGAAA--CTGAGGGTAAAATGGT-AATTTTGGTG
* * * *
32871670 AAATCGGGGTTAAAATGGAATTTTGGAAAGTTAGGGGTAAAATGGTAATTTTTGATG
1 AAATCGGGGTAAAAATGGAATTTTGGAAACTGA-GGGTAAAATGGTAA-TTTTGGTG
* * * * *
32871727 AAATCGGGGTTAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAATGGTAATTTTCGATA
1 AAATCGGGG-TAAAAATGGAATTTTGGAAA-CTGA-GGGTAAAATGGTAATTTT-GGTG
* * * *
32871786 AAATCAGGGTTAAAAATGGAATTTTAGAATATTCGGGGGTAAAATGGTAATTTT
1 AAATC-GGGGTAAAAATGGAATTTTGGAA-ACT-GAGGGTAAAATGGTAATTTT
32871840 TGGAAGTTTC
Statistics
Matches: 197, Mismatches: 20, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
55 1 0.01
56 12 0.06
57 45 0.23
58 70 0.36
59 65 0.33
60 4 0.02
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (55 bp):
AAATCGGGGTAAAAATGGAATTTTGGAAACTGAGGGTAAAATGGTAATTTTGGTG
Found at i:32871628 original size:29 final size:29
Alignment explanation
Indices: 32871594--32871839 Score: 178
Period size: 28 Copynumber: 8.5 Consensus size: 29
32871584 ACCCGAGGGC
32871594 AAAATGGTAATTTTGGTGAAA-TCGGGGTT
1 AAAATGGTAATTTT-GTGAAATTCGGGGTT
* *
32871623 AAAATGG-AATTTTG-GAAAGTTTGGGGGT
1 AAAATGGTAATTTTGTGAAA-TTCGGGGTT
*
32871651 AAAATGGTGATTTTTGGTGAAA-TCGGGGTT
1 AAAATGGT-AATTTT-GTGAAATTCGGGGTT
*
32871681 AAAATGG-AATTTTG-GAAAGTTAGGGG-T
1 AAAATGGTAATTTTGTGAAA-TTCGGGGTT
32871708 AAAATGGTAATTTTTGATGAAA-TCGGGGTT
1 AAAATGGTAA-TTTTG-TGAAATTCGGGGTT
* *
32871738 AAAAATGG-AATTTT-AGAAAGTTTAGGGG-T
1 -AAAATGGTAATTTTGTGAAA--TTCGGGGTT
* *
32871767 AAAATGGTAATTTTCGAT-AAAATCAGGGTT
1 AAAATGGTAATTTT-G-TGAAATTCGGGGTT
* *
32871797 AAAAATGG-AATTTT-AGAATATTCGGGGGT
1 -AAAATGGTAATTTTGTGAA-ATTCGGGGTT
32871826 AAAATGGTAATTTT
1 AAAATGGTAATTTT
32871840 TGGAAGTTTC
Statistics
Matches: 173, Mismatches: 18, Indels: 52
0.71 0.07 0.21
Matches are distributed among these distances:
26 8 0.05
27 14 0.08
28 47 0.27
29 45 0.26
30 33 0.19
31 22 0.13
32 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTGTGAAATTCGGGGTT
Found at i:32871780 original size:59 final size:58
Alignment explanation
Indices: 32871594--32871841 Score: 349
Period size: 59 Copynumber: 4.3 Consensus size: 58
32871584 ACCCGAGGGC
* * *
32871594 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTGATGAAATCGGGGTTAAAATGGAATTTTAGAAAGTTTAGGGGT
* * *
32871651 AAAATGGTGATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAG-TTAGGGGT
1 AAAATGGTAATTTTTGATGAAATCGGGGTTAAAATGGAATTTTAGAAAGTTTAGGGGT
32871708 AAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTAGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGATGAAATCGGGGTT-AAAATGGAATTTTAGAAAGTTTAGGGGT
* * * **
32871767 AAAATGGTAATTTTCGATAAAATCAGGGTTAAAAATGGAATTTTAGAATA-TTCGGGGGT
1 AAAATGGTAATTTTTGATGAAATCGGGGTT-AAAATGGAATTTTAGAA-AGTTTAGGGGT
32871826 AAAATGGTAATTTTTG
1 AAAATGGTAATTTTTG
32871842 GAAGTTTCGG
Statistics
Matches: 176, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
57 44 0.25
58 56 0.32
59 75 0.43
60 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
AAAATGGTAATTTTTGATGAAATCGGGGTTAAAATGGAATTTTAGAAAGTTTAGGGGT
Found at i:32871853 original size:29 final size:27
Alignment explanation
Indices: 32871594--32871854 Score: 120
Period size: 29 Copynumber: 9.0 Consensus size: 27
32871584 ACCCGAGGGC
* *
32871594 AAAATGGTAATTTTGGTGAAATCGGGGTT
1 AAAATGGTAATTTTTG-GAATTCGGGG-T
*
32871623 AAAATGG-AA-TTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTGG-AA--TTCGGGGT
* *
32871651 AAAATGGTGATTTTTGGTGAAATCGGGGTT
1 AAAATGGTAATTTTT-G-GAATTCGGGG-T
*
32871681 AAAATGG-AA-TTTTGGAAAGTTAGGGGT
1 AAAATGGTAATTTTTGG-AA-TTCGGGGT
*
32871708 AAAATGGTAATTTTTGATGAAATCGGGGTT
1 AAAATGGTAATTTTTG--GAATTCGGGG-T
* * *
32871738 AAAAATGG-AATTTTAGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTTGGAA--TTCGGGGT
* * * *
32871767 AAAATGGTAATTTTCGATAAAATCAGGGTT
1 AAAATGGTAATTTTTG--GAATTC-GGGGT
* *
32871797 AAAAATGG-AATTTTAGAATATTCGGGGGT
1 -AAAATGGTAATTTTTGGA-ATTC-GGGGT
32871826 AAAATGGTAATTTTTGGAAGTTTCGGGGT
1 AAAATGGTAATTTTTGGAA--TTCGGGGT
32871855 CAGAATGTAG
Statistics
Matches: 180, Mismatches: 25, Indels: 54
0.69 0.10 0.21
Matches are distributed among these distances:
26 2 0.01
27 17 0.09
28 40 0.22
29 58 0.32
30 41 0.23
31 21 0.12
32 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.34
Consensus pattern (27 bp):
AAAATGGTAATTTTTGGAATTCGGGGT
Found at i:32872245 original size:160 final size:161
Alignment explanation
Indices: 32871996--32872305 Score: 489
Period size: 160 Copynumber: 1.9 Consensus size: 161
32871986 ATTGTAAATG
* * *
32871996 TTGAAAACTTCTTGGGCCAATTTCGTATTTGAATAAAAGTTGATTTGGGATTAAATTAAAACAAA
1 TTGAAAACTTATTGGGCCAATTTCGTAATTGAAAAAAAGTTGATTTGGGATTAAATTAAAACAAA
* *
32872061 TTAAAAATAAAAAGGACTAAATGCATAAATAATCCAAAAAGTGACACGTGGCAGCCTCTGGTACA
66 TTAAAAATAAAAAGGACTAAATGCAGAAATAATCCAAAAAATGACACGTGGCAGCCTCTGGTACA
32872126 GTCAAACAGTCAAAGGACTAGTTTATAAACC
131 GTCAAACAGTCAAAGGACTAGTTTATAAACC
*
32872157 TTGAAAATTTATTGGGCCAATTTCGTAATT-AAAAAAAGTTGATTTGGGGATTAAATTAAAACAA
1 TTGAAAACTTATTGGGCCAATTTCGTAATTGAAAAAAAGTTGATTT-GGGATTAAATTAAAACAA
*** * * *
32872221 ATT-AAAATGTCAGGGACTAAATGCAGAAATGATCCAAAAAATGACACGTGGTAGCCTCTGGTAC
65 ATTAAAAATAAAAAGGACTAAATGCAGAAATAATCCAAAAAATGACACGTGGCAGCCTCTGGTAC
32872285 AGTCAAACAGTCAAAGGACTA
130 AGTCAAACAGTCAAAGGACTA
32872306 AATTGAAAGC
Statistics
Matches: 136, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
160 88 0.65
161 48 0.35
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (161 bp):
TTGAAAACTTATTGGGCCAATTTCGTAATTGAAAAAAAGTTGATTTGGGATTAAATTAAAACAAA
TTAAAAATAAAAAGGACTAAATGCAGAAATAATCCAAAAAATGACACGTGGCAGCCTCTGGTACA
GTCAAACAGTCAAAGGACTAGTTTATAAACC
Found at i:32872680 original size:26 final size:27
Alignment explanation
Indices: 32872630--32872680 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32872620 CAAAGCGCGT
32872630 CGCCGGTCACGCGTCGCATCCTGCCGC
1 CGCCGGTCACGCGTCGCATCCTGCCGC
*
32872657 CGCCGGTCGCGC-TC-CGATCCTGCC
1 CGCCGGTCACGCGTCGC-ATCCTGCC
32872681 CTCAGCCGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 1 0.05
26 10 0.45
27 11 0.50
ACGTcount: A:0.06, C:0.49, G:0.29, T:0.16
Consensus pattern (27 bp):
CGCCGGTCACGCGTCGCATCCTGCCGC
Found at i:32873903 original size:6 final size:6
Alignment explanation
Indices: 32873894--32873984 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
32873884 TTTTTTAATG
* * ** * *
32873894 TTAAAT TTAATGT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
32873942 TTAAAT AATTAAAT TTAAAT TTAAA- ATAAAT TTAAAT TTAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
32873985 AAAATTAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
5 7 0.10
6 51 0.75
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:32873940 original size:17 final size:16
Alignment explanation
Indices: 32873920--32873993 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
32873910 AATTTTTATT
*
32873920 TAAATTTAAATTCAAA
1 TAAATTTAAATTTAAA
*
32873936 GTAAATTTAAA--TAAT
1 -TAAATTTAAATTTAAA
32873951 TAAATTTAAATTTAAAA
1 TAAATTTAAATTT-AAA
32873968 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
*
32873984 TAAAATTAAA
1 TAAATTTAAA
32873994 AATCAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
16 13 0.26
17 25 0.50
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:32873954 original size:31 final size:31
Alignment explanation
Indices: 32873919--32874004 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 31
32873909 TAATTTTTAT
*
32873919 TTAAATTTAAATTCAAAGTAAATTTAAATAA
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
*
32873950 TTAAATTTAAATTTAAAATAAATTTAAAT--
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
* * *
32873979 TTAAA-TAAAATTAAAAATCAATTTAA
1 TTAAATTTAAATTCAAAATAAATTTAA
32874005 CTCTAAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 18 0.36
29 5 0.10
31 27 0.54
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (31 bp):
TTAAATTTAAATTCAAAATAAATTTAAATAA
Found at i:32874011 original size:28 final size:28
Alignment explanation
Indices: 32873958--32874022 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
32873948 AATTAAATTT
* *
32873958 AAATTTAAAATAAATTTAAATTTAAATA
1 AAATTAAAAATAAATTTAAATCTAAATA
* * *
32873986 AAATTAAAAATCAATTTAACTCTAAATT
1 AAATTAAAAATAAATTTAAATCTAAATA
*
32874014 AAATGAAAA
1 AAATTAAAA
32874023 GTCTAAGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (28 bp):
AAATTAAAAATAAATTTAAATCTAAATA
Found at i:32878370 original size:13 final size:15
Alignment explanation
Indices: 32878344--32878376 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32878334 ATAAATTAGC
32878344 TAAAATTATGAAAAA
1 TAAAATTATGAAAAA
32878359 -AAAATTAT-AAAAA
1 TAAAATTATGAAAAA
32878372 TAAAA
1 TAAAA
32878377 GGTATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAATTATGAAAAA
Found at i:32878459 original size:18 final size:18
Alignment explanation
Indices: 32878417--32878461 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
32878407 GTTTAACTTT
32878417 TTAAAATTTAAAAAACATA
1 TTAAAA-TTAAAAAACATA
*
32878436 TAAAAATTAAAAAA-ATAA
1 TTAAAATTAAAAAACAT-A
32878454 TTAAAATT
1 TTAAAATT
32878462 CCTGGAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 5 0.22
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
TTAAAATTAAAAAACATA
Found at i:32886125 original size:17 final size:17
Alignment explanation
Indices: 32886103--32886137 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32886093 TCTAAAAAAT
*
32886103 TTTAAACTTAATATAAA
1 TTTAAACTTAAAATAAA
*
32886120 TTTAAATTTAAAATAAA
1 TTTAAACTTAAAATAAA
32886137 T
1 T
32886138 ATGAACTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTAAACTTAAAATAAA
Found at i:32886256 original size:26 final size:27
Alignment explanation
Indices: 32886218--32886268 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
32886208 AATTGGGCTA
32886218 AATTTGGCTAGCCCAAAT-CCAAATAC
1 AATTTGGCTAGCCCAAATGCCAAATAC
*
32886244 AATTT-GCTAAGCCCAAGTGCCAAAT
1 AATTTGGCT-AGCCCAAATGCCAAAT
32886269 TGCAACTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 3 0.14
26 13 0.59
27 6 0.27
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (27 bp):
AATTTGGCTAGCCCAAATGCCAAATAC
Found at i:32887945 original size:30 final size:30
Alignment explanation
Indices: 32887902--32888036 Score: 157
Period size: 29 Copynumber: 4.6 Consensus size: 30
32887892 ATAGGTCTCT
* * *
32887902 AAACTGTCCAAAAATTATATTTTGACCTCA
1 AAACTTTCTAAAAATTATATTTTGACCCCA
*
32887932 AAACTTTCTAAAAATTATATTTTGACCCCC
1 AAACTTTCTAAAAATTATATTTTGACCCCA
* * *
32887962 GAACTTCCT-AAAATTATATTTTGATCCCA
1 AAACTTTCTAAAAATTATATTTTGACCCCA
* *
32887991 AAACTTTCTAAAAATTA-CTTTTGACCCCT
1 AAACTTTCTAAAAATTATATTTTGACCCCA
* *
32888020 AAACTTCCCAAAAATTA
1 AAACTTTCTAAAAATTA
32888037 CCATTTTACA
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 49 0.55
30 40 0.45
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (30 bp):
AAACTTTCTAAAAATTATATTTTGACCCCA
Found at i:32888004 original size:59 final size:58
Alignment explanation
Indices: 32887902--32888036 Score: 191
Period size: 59 Copynumber: 2.3 Consensus size: 58
32887892 ATAGGTCTCT
32887902 AAACTGTCCAAAAATTATATTTTGACCTCAAAACTTTCTAAAAATTATATTTTGACCCCC
1 AAACT-TCCAAAAATTATATTTTGACCTCAAAACTTTCTAAAAATTA-ATTTTGACCCCC
* * * *
32887962 GAACTTCCTAAAATTATATTTTGATCC-CAAAACTTTCTAAAAATTACTTTTGACCCCT
1 AAACTTCCAAAAATTATATTTTGA-CCTCAAAACTTTCTAAAAATTAATTTTGACCCCC
32888020 AAACTTCCCAAAAATTA
1 AAACTT-CCAAAAATTA
32888037 CCATTTTACA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
58 15 0.22
59 46 0.69
60 6 0.09
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (58 bp):
AAACTTCCAAAAATTATATTTTGACCTCAAAACTTTCTAAAAATTAATTTTGACCCCC
Found at i:32888064 original size:59 final size:58
Alignment explanation
Indices: 32887992--32888123 Score: 140
Period size: 59 Copynumber: 2.2 Consensus size: 58
32887982 TTGATCCCAA
* * *
32887992 AACTTTCTAAAAATTAC-TTTTGACCCCTAAACTTCCCAAAAATTACCATTTTACACCCCG
1 AACTTTC-CAAAATTACATTTTGA-ACCTAAACTTCACAAAAATTACCATTTTAC-CCCCG
* * * ** * *
32888052 AACTTTCCAAAATTTCATTTTTAACCTCATTTTCACTAAAATTACCATTTTACCCTCG
1 AACTTTCCAAAATTACATTTTGAACCTAAACTTCACAAAAATTACCATTTTACCCCCG
32888110 AACTTTCCAAAATT
1 AACTTTCCAAAATT
32888124 CTATTTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
58 18 0.30
59 31 0.51
60 12 0.20
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.36
Consensus pattern (58 bp):
AACTTTCCAAAATTACATTTTGAACCTAAACTTCACAAAAATTACCATTTTACCCCCG
Found at i:32888123 original size:29 final size:30
Alignment explanation
Indices: 32887903--32888121 Score: 95
Period size: 29 Copynumber: 7.4 Consensus size: 30
32887893 TAGGTCTCTA
* * *
32887903 AACTGTCCAAAAATTA-TATTTTGA-CCTCAA
1 AACTTTCCAAAAATTACCATTTT-ACCCTC-G
* * *
32887933 AACTTTCTAAAAATTA-TATTTTGACCCCCG
1 AACTTTCCAAAAATTACCATTTT-ACCCTCG
* * **
32887963 AAC-TTCCTAAAATTA-TATTTTGATCCC-AA
1 AACTTTCCAAAAATTACCATTTT-A-CCCTCG
* *
32887992 AACTTTCTAAAAATTA-C-TTTTGACCC-CTA
1 AACTTTCCAAAAATTACCATTTT-ACCCTC-G
* *
32888021 AACTTCCCAAAAATTACCATTTTACACCCCG
1 AACTTTCCAAAAATTACCATTTTAC-CCTCG
* *
32888052 AACTTTCC-AAAATT-TCATTTTTAACCTC-
1 AACTTTCCAAAAATTACCA-TTTTACCCTCG
* *
32888080 -ATTTTCACTAAAATTACCATTTTACCCTCG
1 AACTTTC-CAAAAATTACCATTTTACCCTCG
32888110 AACTTTCCAAAA
1 AACTTTCCAAAA
32888122 TTCTATTTTT
Statistics
Matches: 151, Mismatches: 24, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
27 5 0.03
28 4 0.03
29 62 0.41
30 58 0.38
31 21 0.14
32 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (30 bp):
AACTTTCCAAAAATTACCATTTTACCCTCG
Found at i:32888130 original size:58 final size:59
Alignment explanation
Indices: 32888024--32888160 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 59
32888014 ACCCCTAAAC
*
32888024 TTCCCAAAAATTACCATTTTACACCCCGAACTTTCCAAAATTTCATTTTTAACCTC-ATT
1 TTCCC-AAAATTACCATTTTACACCCCGAACTTTCCAAAATTTCATTTTTAACCCCAATT
* *
32888083 TTCACTAAAATTACCATTTTAC-CCTCGAACTTTCCAAAA-TTCTATTTTTAACCCCAAATT
1 TTC-CCAAAATTACCATTTTACACCCCGAACTTTCCAAAATTTC-ATTTTTAACCCC-AATT
32888143 TTCCCAAAATTA-CATTTT
1 TTCCCAAAATTACCATTTT
32888161 TGGCCCCGAG
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
57 3 0.04
58 33 0.47
59 27 0.39
60 7 0.10
ACGTcount: A:0.33, C:0.27, G:0.01, T:0.39
Consensus pattern (59 bp):
TTCCCAAAATTACCATTTTACACCCCGAACTTTCCAAAATTTCATTTTTAACCCCAATT
Found at i:32888145 original size:29 final size:30
Alignment explanation
Indices: 32887933--32888161 Score: 108
Period size: 29 Copynumber: 7.8 Consensus size: 30
32887923 TTGACCTCAA
* * *
32887933 AACTTTCTAAAAATTA-TATTTTGACCCCCG
1 AACTTTC-CAAAATTACTATTTTTAACCCCG
* * **
32887963 AAC-TTCCTAAAATTA-TATTTTGATCCCAA
1 AACTTTCC-AAAATTACTATTTTTAACCCCG
* * *
32887992 AACTTTCTAAAAATTAC---TTTTGACCCCTA
1 AACTTTC-CAAAATTACTATTTTTAACCCC-G
* *
32888021 AACTTCCCAAAAATTACCA-TTTTACACCCCG
1 AACTTTCC-AAAATTACTATTTTTA-ACCCCG
* *
32888052 AACTTTCCAAAATTTC-ATTTTTAACCTC-
1 AACTTTCCAAAATTACTATTTTTAACCCCG
* *
32888080 -ATTTTCACTAAAATTACCA-TTTT-ACCCTCG
1 AACTTTC-C-AAAATTACTATTTTTAACCC-CG
*
32888110 AACTTTCCAAAATT-CTATTTTTAACCCCA
1 AACTTTCCAAAATTACTATTTTTAACCCCG
*
32888139 AATTTTCCCAAAATTAC-ATTTTT
1 AACTTT-CCAAAATTACTATTTTT
32888162 GGCCCCGAGA
Statistics
Matches: 156, Mismatches: 23, Indels: 40
0.71 0.11 0.18
Matches are distributed among these distances:
27 5 0.03
28 12 0.08
29 72 0.46
30 45 0.29
31 17 0.11
32 5 0.03
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTCCAAAATTACTATTTTTAACCCCG
Found at i:32895000 original size:23 final size:24
Alignment explanation
Indices: 32894961--32895007 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
32894951 AGCTCGAAAA
32894961 TAATCAGATTATATTTACTAATTT
1 TAATCAGATTATATTTACTAATTT
*
32894985 TAATCAGA-TATATTTACTTATTT
1 TAATCAGATTATATTTACTAATTT
32895008 AAATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (24 bp):
TAATCAGATTATATTTACTAATTT
Found at i:32895439 original size:24 final size:24
Alignment explanation
Indices: 32895412--32895473 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
32895402 TTAAACATAT
32895412 ATATTTAATTTTTTAATTTTAATAA
1 ATATTTAATTTTTTAA-TTTAATAA
**
32895437 TATAAATAA-TTTTTAATTTAATAA
1 -ATATTTAATTTTTTAATTTAATAA
32895461 ATTATTTAATTTT
1 A-TATTTAATTTT
32895474 ATATTATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 1 0.03
24 13 0.43
25 10 0.33
26 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
ATATTTAATTTTTTAATTTAATAA
Found at i:32914590 original size:31 final size:30
Alignment explanation
Indices: 32914545--32914623 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
32914535 TTGATACTCC
* *
32914545 TAAAAAT-GTAAAATTTTAGTTTAA-TCTCTT
1 TAAAAATAATAAAATTATA-TTTAATTC-CTT
*
32914575 TAAAAATAATAAAATTATATTTACTTCCTT
1 TAAAAATAATAAAATTATATTTAATTCCTT
32914605 TAAAAATAATAAAATTATA
1 TAAAAATAATAAAATTATA
32914624 AATTAATACA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 33 0.75
31 11 0.25
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (30 bp):
TAAAAATAATAAAATTATATTTAATTCCTT
Done.