Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 112 of 125
Found at i:34462542 original size:30 final size:30
Alignment explanation
Indices: 34462501--34462575 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
34462491 TAATTTATAT
* * *
34462501 TTTTATAATTTTTAAAA-GATTAAATTAAAA
1 TTTTATCATTTTTAAAATG-GTAAAGTAAAA
*
34462531 TTTTATCATTTTTAAAATGGTAAAGTGAAA
1 TTTTATCATTTTTAAAATGGTAAAGTAAAA
*
34462561 TTTTATCATTATTAA
1 TTTTATCATTTTTAA
34462576 TTTAAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 38 0.97
31 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (30 bp):
TTTTATCATTTTTAAAATGGTAAAGTAAAA
Found at i:34464714 original size:192 final size:192
Alignment explanation
Indices: 34464213--34464731 Score: 507
Period size: 192 Copynumber: 2.7 Consensus size: 192
34464203 TTTGACGAGG
* * *
34464213 GTGAAAAGTAAATACTATTCAGATTTAGCTCTATGATGAATTTATCATACGTTCATAACACTATA
1 GTGAAAAGTAAATAC-ATTCAGATTTAGCTCTATGA-CAAATTATCATAAGTTCATAACACTATA
* ** * * *
34464278 CAGTTCGTGGTGAGCTTTGT-ATTTTTTGAATGATTCTGCTATGTTAT---AAAGTTCACTAATT
64 -AATTTATGGTGAG-TTTTTCATTTTCTGAATGATTCTGATATGTTATAGAAAAGTTCACTAATT
** * * * * ** *
34464339 GCTGTACTGATTTAGCTTCGCTAGCTGATCCTTAAACTCAGCTTTGTCTGCTTGTTTTTGATGAG
127 GCCATACAGATTTAACTTCGCTAGCTGATCCTTAAACTCAGCTTTATCCGCTTGTTTCGGATGAC
*
34464404 G
192 A
* * ** * * *
34464405 GTGAAAAGTAGATACCATTCAGATTTAGCTCAATGATGAATTATCATTAGTTTATAGCAGC-ATA
1 GTGAAAAGTAAATA-CATTCAGATTTAGCTCTATGACAAATTATCATAAGTTCATAACA-CTATA
* * * * * *
34464469 AACTTTATGGTGAGCTTTCCGTTTTCTGAATGATTCTGGTATGTTATAGAAAAGTTCGCTTATTG
64 AA-TTTATGGTGAGTTTTTCATTTTCTGAATGATTCTGATATGTTATAGAAAAGTTCACTAATTG
* * *
34464534 CCATACAGATTTAACTGT-GCTAGCTGATCCTTAAGCTCAG-TTTAATCCGCTTGTTTCGGGTGC
128 CCATACAGATTTAACT-TCGCTAGCTGATCCTTAAACTCAGCTTT-ATCCGCTTGTTTCGGATGA
34464597 CA
191 CA
* *
34464599 GTG-AAAGTAAATATCATTCTGATTTAGCTCTATGACAAATTA-CATAAGTTCATAACATTATAA
1 GTGAAAAGTAAATA-CATTCAGATTTAGCTCTATGACAAATTATCATAAGTTCATAACACTATAA
* * * *
34464662 ATTTATTGGCGAGTTTTTCATTTTCTGAATGATTCTAATATGTTATAGAAAAGATCACTCATTGC
65 ATTTA-TGGTGAGTTTTTCATTTTCTGAATGATTCTGATATGTTATAGAAAAGTTCACTAATTGC
34464727 CATAC
129 CATAC
34464732 TGTTTTAAGA
Statistics
Matches: 264, Mismatches: 52, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
190 3 0.01
191 56 0.21
192 105 0.40
193 37 0.14
194 62 0.23
195 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (192 bp):
GTGAAAAGTAAATACATTCAGATTTAGCTCTATGACAAATTATCATAAGTTCATAACACTATAAA
TTTATGGTGAGTTTTTCATTTTCTGAATGATTCTGATATGTTATAGAAAAGTTCACTAATTGCCA
TACAGATTTAACTTCGCTAGCTGATCCTTAAACTCAGCTTTATCCGCTTGTTTCGGATGACA
Found at i:34477903 original size:31 final size:31
Alignment explanation
Indices: 34477863--34477997 Score: 111
Period size: 31 Copynumber: 4.5 Consensus size: 31
34477853 AAAAAAAAGA
34477863 TTAGGTACCAAATTAGGAATAATAGTCAAGT
1 TTAGGTACCAAATTAGGAATAATAGTCAAGT
* * * *
34477894 TCAGGTACCAAATT-TGACTCAA-A--AAAGT
1 TTAGGTACCAAATTAGGAAT-AATAGTCAAGT
* * * *
34477922 TTAAGTACCAACTTAAGAA-AATGTGTCAAGT
1 TTAGGTACCAAATTAGGAATAAT-AGTCAAGT
*
34477953 TTAGATACCAAATTAGGAATAAGT-GTCAAGT
1 TTAGGTACCAAATTAGGAATAA-TAGTCAAGT
*
34477984 TTGGGTACCAAATT
1 TTAGGTACCAAATT
34477998 GAACAAAAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
27 2 0.03
28 15 0.19
29 2 0.03
30 4 0.05
31 53 0.67
32 2 0.03
33 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAATAATAGTCAAGT
Found at i:34477918 original size:59 final size:59
Alignment explanation
Indices: 34477855--34477966 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
34477845 AATCGAACAA
* * *
34477855 AAAAAAGATTAGGTACCAAATTAGGAATAAT-AGTCAAGTTCAGGTACCAAATTTGACTC
1 AAAAAAGATTAAGTACCAAATTAAGAA-AATGAGTCAAGTTCAGATACCAAATTTGACTC
* * * *
34477914 AAAAAAGTTTAAGTACCAACTTAAGAAAATGTGTCAAGTTTAGATACCAAATT
1 AAAAAAGATTAAGTACCAAATTAAGAAAATGAGTCAAGTTCAGATACCAAATT
34477967 AGGAATAAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 3 0.07
59 42 0.93
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (59 bp):
AAAAAAGATTAAGTACCAAATTAAGAAAATGAGTCAAGTTCAGATACCAAATTTGACTC
Found at i:34478008 original size:90 final size:90
Alignment explanation
Indices: 34477863--34478055 Score: 264
Period size: 90 Copynumber: 2.1 Consensus size: 90
34477853 AAAAAAAAGA
* ** *
34477863 TTAGGTACCAAATTAGGAATAATAGTCAAGTTCAGGTACCAAATTTGACTCAAAAAAGTTTAAGT
1 TTAGATACCAAATTAGGAATAATAGTCAAGTTCAGGTACCAAATTTGACAAAAAAAAATTTAAGT
*
34477928 ACCAACTTAAGAAAATGTGTCAAGT
66 ACCAACTTAAGAAAATATGTCAAGT
**
34477953 TTAGATACCAAATTAGGAATAAGT-GTCAAGTTTGGGTACCAAA-TTGAACAAAAAAAAATTTAA
1 TTAGATACCAAATTAGGAATAA-TAGTCAAGTTCAGGTACCAAATTTG-ACAAAAAAAAATTTAA
* * *
34478016 GTATCAATTTAGGAAAATATGTCAAGT
64 GTACCAACTTAAGAAAATATGTCAAGT
34478043 TTAGATACCAAAT
1 TTAGATACCAAAT
34478056 GTTATATTAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
89 3 0.03
90 87 0.96
91 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.28
Consensus pattern (90 bp):
TTAGATACCAAATTAGGAATAATAGTCAAGTTCAGGTACCAAATTTGACAAAAAAAAATTTAAGT
ACCAACTTAAGAAAATATGTCAAGT
Found at i:34487263 original size:2 final size:2
Alignment explanation
Indices: 34487256--34487280 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
34487246 ATAAACTATC
34487256 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
34487281 CGTTTCCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34497796 original size:236 final size:235
Alignment explanation
Indices: 34497383--34497834 Score: 687
Period size: 236 Copynumber: 1.9 Consensus size: 235
34497373 CTTGTTTCCC
34497383 TTTTCATTGCCGGCTCCAAATTAGAGAAAATGCTAATACATTTGACTACTTCGTCTGTAGTAAAA
1 TTTTCATTGCCGGCTCCAAATTAGAGAAAATGCTAATACATTTGACTACTTCGTCTGTAGTAAAA
* ** *
34497448 AAGCAGGAGTGAATCTTGTAATGACTTTATGCTACATTAGTCAGTTTTCGCGAGAATTGTAGGAG
66 AAGCAGGAGTGAATCTTGTAATAACTTTATGCTACATTAGTCAGTTTTCGCGAGAATCATAGAAG
* * *
34497513 GGGAAGAAAGGCGAGGAAAATTTCATTAAAAGAACTGTAAGGAAGCCATTCCAATGAGTTTTTCA
131 GGGAAGAAAGGCAAGGAAAATTGCATTAAAAGAACTGCAAGGAAGCCATTCCAATGAG-TTTTCA
34497578 TTAAGG-GGTGAAGTGATACAATAGAAAATAAAGTCATTTTT
195 TTAAGGAGG-GAAGTGATACAATAGAAAATAAAGTCATTTTT
* * *
34497619 TTTTCATTGCTGGCTCCAAATTAGAGAAAATGCTAATACATTTTACTATCTT-GT-TAGTGGTAA
1 TTTTCATTGCCGGCTCCAAATTAGAGAAAATGCTAATACATTTGACTA-CTTCGTCT-GTAGTAA
** *
34497682 AAAAGCAGGAGTGTGTCTTGTAATAACTTTATGCTACATTAGTCAGTTTTCGTGAGAATCATAGA
64 AAAAGCAGGAGTGAATCTTGTAATAACTTTATGCTACATTAGTCAGTTTTCGCGAGAATCATAGA
* *
34497747 AGGGGAAGGAAGGCAAGGAAGATTGCATTAAAAGAACAT-CAAGGAAGCCATTCCAATGAGTTTT
129 AGGGGAAGAAAGGCAAGGAAAATTGCATTAAAAGAAC-TGCAAGGAAGCCATTCCAATGAGTTTT
*
34497811 CATTGAGGAGGGAAGTGATACAAT
193 CATTAAGGAGGGAAGTGATACAAT
34497835 TTGGTGTTTT
Statistics
Matches: 196, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
235 25 0.13
236 167 0.85
237 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (235 bp):
TTTTCATTGCCGGCTCCAAATTAGAGAAAATGCTAATACATTTGACTACTTCGTCTGTAGTAAAA
AAGCAGGAGTGAATCTTGTAATAACTTTATGCTACATTAGTCAGTTTTCGCGAGAATCATAGAAG
GGGAAGAAAGGCAAGGAAAATTGCATTAAAAGAACTGCAAGGAAGCCATTCCAATGAGTTTTCAT
TAAGGAGGGAAGTGATACAATAGAAAATAAAGTCATTTTT
Found at i:34504532 original size:2 final size:2
Alignment explanation
Indices: 34504525--34504554 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
34504515 AAATGGCAGT
*
34504525 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34504555 ATGGACAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34513720 original size:22 final size:22
Alignment explanation
Indices: 34513686--34513739 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
34513676 GAAAATGATA
* *
34513686 ATAATC-CATAAATGAAATAAG
1 ATAATCACAAAAATAAAATAAG
34513707 ATAATCACAAAAATAAAATAAG
1 ATAATCACAAAAATAAAATAAG
*
34513729 ATAATTACAAA
1 ATAATCACAAA
34513740 TCAAAGTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.63, C:0.09, G:0.06, T:0.22
Consensus pattern (22 bp):
ATAATCACAAAAATAAAATAAG
Found at i:34518933 original size:8 final size:8
Alignment explanation
Indices: 34518920--34518947 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
34518910 ATCATTTTTC
34518920 AAAAAACA
1 AAAAAACA
34518928 AAAAAACA
1 AAAAAACA
34518936 AAAAAACA
1 AAAAAACA
34518944 AAAA
1 AAAA
34518948 CAAAGAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:34528249 original size:4 final size:4
Alignment explanation
Indices: 34528240--34528296 Score: 53
Period size: 4 Copynumber: 14.2 Consensus size: 4
34528230 CAAATAAACG
* * * *
34528240 AGAA AGAA AGAA AGAC AGAA AGAC AGAA GGAGA GGAA AGAA AGAA A-AA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA-A AGAA AGAA AGAA AGAA
*
34528288 GGAA AGAA A
1 AGAA AGAA A
34528297 AGTAATGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
3 2 0.05
4 37 0.86
5 4 0.09
ACGTcount: A:0.67, C:0.04, G:0.30, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:34530683 original size:21 final size:21
Alignment explanation
Indices: 34530657--34530702 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
34530647 TAGGGTCCAT
*
34530657 TTACCCCGAAGGAGTAGAGTA
1 TTACCCCGAAGGAGTAGAATA
*
34530678 TTACCCGGAAGGAGTAGAATA
1 TTACCCCGAAGGAGTAGAATA
34530699 TTAC
1 TTAC
34530703 GGTGGCTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (21 bp):
TTACCCCGAAGGAGTAGAATA
Found at i:34530816 original size:45 final size:45
Alignment explanation
Indices: 34530697--34530830 Score: 171
Period size: 45 Copynumber: 3.0 Consensus size: 45
34530687 AGGAGTAGAA
* **
34530697 TATTACGGTGGCTCGTCAAACT-CAGCCTGATATCCTTCCCTTGAG
1 TATTACGGTGGCTCGTCAAACTGAAG-CTGATATCCTTGGCTTGAG
* *
34530742 TATTACGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGGTTGAG
1 TATTACGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTTGAG
* * * *
34530787 TATTGCGGTGGCTTGTCAAATTGAAGCTGATATCTTTGGCTTGA
1 TATTACGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTTGA
34530831 TAAGCTATGC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 76 0.99
46 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (45 bp):
TATTACGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTTGAG
Found at i:34532795 original size:16 final size:16
Alignment explanation
Indices: 34532774--34532822 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
34532764 TGATGGGGAT
34532774 ATTATTTTGGTAATTA
1 ATTATTTTGGTAATTA
34532790 ATTATTTT--TATATT-
1 ATTATTTTGGTA-ATTA
34532804 A-TATTTTGGTAATTA
1 ATTATTTTGGTAATTA
34532819 ATTA
1 ATTA
34532823 GTTAGGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 6 0.21
16 10 0.36
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTATTTTGGTAATTA
Found at i:34533601 original size:18 final size:18
Alignment explanation
Indices: 34533580--34533614 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
34533570 AATTAAATTT
34533580 AAAATTAATCAAACTTAA
1 AAAATTAATCAAACTTAA
*
34533598 AAAATTAATTAAACTTA
1 AAAATTAATCAAACTTA
34533615 CATTTCTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATTAATCAAACTTAA
Found at i:34533802 original size:4 final size:4
Alignment explanation
Indices: 34533793--34533832 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
34533783 CTTCCCCTTC
*
34533793 TTCT TTCT TTCT TTCT TTCT TTCT TTC- -TCT TTTT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
34533833 TTTTTTCCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
4 30 0.94
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (4 bp):
TTCT
Found at i:34533829 original size:22 final size:20
Alignment explanation
Indices: 34533798--34533839 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
34533788 CCTTCTTCTT
34533798 TCTTTCTTTCTTTCTTTCTTTC
1 TCTTTCTTTCTTT-TTT-TTTC
*
34533820 TCTTTTTTTCTTTTTTTTTC
1 TCTTTCTTTCTTTTTTTTTC
34533840 CTTCAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TCTTTCTTTCTTTTTTTTTC
Found at i:34534756 original size:169 final size:169
Alignment explanation
Indices: 34534468--34534811 Score: 472
Period size: 169 Copynumber: 2.0 Consensus size: 169
34534458 GTGGCCTATA
* * * * * *
34534468 TGAACTGATGTTGGTGAAACCAACTTGGGTTGGTTCGGTTGGTTCATGTTCATTAGCGTCTTGGT
1 TGAACTGATGTTGGTGAAACCAACTTAGGTTGATTCAGTTGGCTCATGTTCATTAGCGCCTTGGC
* * ** * * * **
34534533 AAGCAACGCGGTTCGAATCTTGCTAGTATTTTTATTTGGTGGGTGATGTATATGATCATAAATCA
66 AAGCAACGCGGTTCGAATATTACTAACACTCTTATTTGGGGGGTGACCTATATGATCATAAATCA
* * **
34534598 CACTTTGATTTAAAAAGGGTTTTATCATTATTTAGGGCT
131 CACTTTGATTTAAAAAAGATTAAATCATTATTTAGGGCT
* *
34534637 TGAATTGATGTTGGTGAAACCAACTTAGGTTGATTCAGTTGGCTCGTGTTCATTAGCGCCTTGGC
1 TGAACTGATGTTGGTGAAACCAACTTAGGTTGATTCAGTTGGCTCATGTTCATTAGCGCCTTGGC
* *
34534702 AAGCAATGCGGTTCGAATATTACTAACACTCTTATTTGGGGGGTGACCTATATGATCATAAGTCA
66 AAGCAACGCGGTTCGAATATTACTAACACTCTTATTTGGGGGGTGACCTATATGATCATAAATCA
*
34534767 CACTTTGATTTAAAAAAGATTAAATCATTTTTTAGGGCT
131 CACTTTGATTTAAAAAAGATTAAATCATTATTTAGGGCT
34534806 TGAACT
1 TGAACT
34534812 TGGTAATAAC
Statistics
Matches: 150, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
169 150 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (169 bp):
TGAACTGATGTTGGTGAAACCAACTTAGGTTGATTCAGTTGGCTCATGTTCATTAGCGCCTTGGC
AAGCAACGCGGTTCGAATATTACTAACACTCTTATTTGGGGGGTGACCTATATGATCATAAATCA
CACTTTGATTTAAAAAAGATTAAATCATTATTTAGGGCT
Found at i:34542078 original size:30 final size:30
Alignment explanation
Indices: 34542044--34542104 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
34542034 TTGTAATAAT
34542044 TTAATTTTGTACTTTATAGTTGTTCAAACA
1 TTAATTTTGTACTTTATAGTTGTTCAAACA
34542074 TTAATTTTGTACTTTATAGTTGTTCAAACA
1 TTAATTTTGTACTTTATAGTTGTTCAAACA
34542104 T
1 T
34542105 GTATTTATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (30 bp):
TTAATTTTGTACTTTATAGTTGTTCAAACA
Found at i:34543285 original size:29 final size:30
Alignment explanation
Indices: 34543246--34543309 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
34543236 TTAATTTATT
* * *
34543246 AAATTAAATT-ATGACACATATATTTATAA
1 AAATAAAATTAATAACAAATATATTTATAA
*
34543275 AAATAAAATTACATAATAAATATATTTATAA
1 AAATAAAATTA-ATAACAAATATATTTATAA
34543306 AAAT
1 AAAT
34543310 TTAAATGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.31
31 20 0.69
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (30 bp):
AAATAAAATTAATAACAAATATATTTATAA
Found at i:34551842 original size:19 final size:20
Alignment explanation
Indices: 34551818--34551857 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
34551808 CACTTCAAAG
* *
34551818 ATTTTTTTCAA-AAGAATCA
1 ATTTTTCTCAACAAAAATCA
34551837 ATTTTTCTCAACAAAAATCA
1 ATTTTTCTCAACAAAAATCA
34551857 A
1 A
34551858 ATAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (20 bp):
ATTTTTCTCAACAAAAATCA
Found at i:34554384 original size:3 final size:3
Alignment explanation
Indices: 34554376--34554401 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
34554366 TCTTTCTCCG
34554376 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
34554402 TATTTCCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:34556260 original size:5 final size:5
Alignment explanation
Indices: 34556250--34556282 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
34556240 TGCAAGGTGT
34556250 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
34556283 AAATAAGTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:34560329 original size:17 final size:18
Alignment explanation
Indices: 34560287--34560329 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
34560277 TAATCTCTTT
*
34560287 AAAATTCTAAAAATGATA
1 AAAATTATAAAAATGATA
*
34560305 AAAA-TATAGAAAT-ATA
1 AAAATTATAAAAATGATA
34560321 AAAATTATA
1 AAAATTATA
34560330 CTTTAACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 7 0.32
17 11 0.50
18 4 0.18
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAATTATAAAAATGATA
Found at i:34561625 original size:22 final size:20
Alignment explanation
Indices: 34561598--34561638 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
34561588 TTTTAAACCA
*
34561598 ATCTAATATATCTATCATATTG
1 ATCTAAAATA-CTA-CATATTG
34561620 ATCTAAAATACTACATATT
1 ATCTAAAATACTACATATT
34561639 TCGATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 9 0.50
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (20 bp):
ATCTAAAATACTACATATTG
Found at i:34569395 original size:14 final size:15
Alignment explanation
Indices: 34569368--34569396 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34569358 TACAATCCAC
34569368 GCTTCAAGATAAATT
1 GCTTCAAGATAAATT
34569383 GCTTCAA-ATAAATT
1 GCTTCAAGATAAATT
34569397 AATATTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.34
Consensus pattern (15 bp):
GCTTCAAGATAAATT
Found at i:34569527 original size:2 final size:2
Alignment explanation
Indices: 34569522--34569560 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
34569512 ACTTACCTCA
34569522 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34569561 GTCCAATAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34576645 original size:913 final size:913
Alignment explanation
Indices: 34574878--34580357 Score: 10933
Period size: 913 Copynumber: 6.0 Consensus size: 913
34574868 AAGTTAGAAA
34574878 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34574943 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34575008 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34575073 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34575138 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34575203 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34575268 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
*
34575333 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAAAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34575398 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34575463 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34575528 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34575593 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
34575658 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34575723 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34575788 TAT
911 TAT
34575791 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34575856 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34575921 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34575986 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34576051 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34576116 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34576181 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
34576246 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34576311 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34576376 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34576441 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34576506 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
34576571 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34576636 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34576701 TAT
911 TAT
34576704 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34576769 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34576834 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34576899 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34576964 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34577029 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34577094 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
34577159 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34577224 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34577289 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34577354 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34577419 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
34577484 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34577549 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34577614 TAT
911 TAT
34577617 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34577682 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34577747 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34577812 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34577877 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34577942 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34578007 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
34578072 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34578137 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34578202 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34578267 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34578332 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
34578397 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34578462 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34578527 TAT
911 TAT
34578530 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34578595 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34578660 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34578725 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34578790 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34578855 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34578920 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
34578985 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34579050 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34579115 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34579180 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34579245 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
34579310 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34579375 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34579440 TAT
911 TAT
34579443 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
1 ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
34579508 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
66 TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
34579573 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
131 TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
34579638 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
196 TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
34579703 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
261 AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
34579768 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
326 CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
34579833 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
391 TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
*
34579898 TTATAGAATTTATTTTGAGGTGTTAAGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
456 TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
34579963 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
521 TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
34580028 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
586 ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
34580093 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
651 AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
34580158 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
716 TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
*
34580223 TAGTATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
781 TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
34580288 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
846 TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
34580353 TAT
911 TAT
34580356 AT
1 AT
34580358 AATGATTTAA
Statistics
Matches: 4564, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
913 4564 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.31
Consensus pattern (913 bp):
ATTAAGGAGTAATTAGTAATTGTAAGAAAGGAGAAAGGACTAAATAGTAATTTATCCAAATTAAA
TTATGAGTCATCATGGGAATTAGATTGATTAAGGAGGGGAAAAAGAGTAATTTGGTGAAAGATAT
TTTTGGAGGCAAAGTTTTGGGCCAAAGTGTAAAGTTGGAAGGCCCAAGGACTAAAAGTGCAATTT
TACCATTTTTATTAATTGAGATATTTTTGAAGAGAAGTCTAGAGAATTTGAGAGAAAGAAAAAGA
AATAAAAGATGAAAAAATATCATCTTTTTCATAAGCTTAACCGTCCATGCCTATTCTCTCTCCAT
CCAACTTTTGCTTTTATTCCAATTTAGTCCCTTCACCATTGTTAAGCCCTCCAAGCTCCAAAATC
TCCTATTTTCTTTGAAATTTCTGAAAGAAAGGAATAGAAGAAGGTTAGTAGACACCTCAAACTTC
TTATAGAATTTATTTTGAGGTGTTAGGGAGCATAGAGACTAAATTAATTTCGTGATTTCAAGAGC
TAAGGTAAGAGATGACTCAATTTTCATGATATACATGTATTTTTTTGCACATTAGCATAAAAATC
ATTGAATTATAGCTCATAAGTTTACATGTGTCTATGTGAAATTGAAGAGAAAGAGAAGAAACAAA
AGGGGCCAAATTGAAGACAAAGGAAAAGAATAGAGCAAGGGGTAAAAAGAGAGGAAATTCAGCCT
TTTTGCTGTAAATACTATAAAAGTTTTGATTTATAGTTTACCTTCTCTAATGGTATATGAATTAT
TAGCATAAAAATTGTTATATAGGTACATAGTTTGAATGTTTACAATGATAAAATGAAGGGATTAA
TGTGTGATTGAGTAAAACAGTTTGGACAGAACAGAGGATTAACTTCGAAAATTCACCAAAAATTG
TAT
Found at i:34581173 original size:22 final size:23
Alignment explanation
Indices: 34581145--34581200 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 23
34581135 CGCTAGCGCC
34581145 CTTCTGTT-CAGCACTGTGTGTG
1 CTTCTGTTCCAGCACTGTGTGTG
34581167 CTTCTGTTTCCCCAGCACTGTGTGTG
1 CTTCTG-TT--CCAGCACTGTGTGTG
34581193 CTTCTGTT
1 CTTCTGTT
34581201 TCCCCAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.20
23 2 0.07
25 2 0.07
26 20 0.67
ACGTcount: A:0.07, C:0.27, G:0.23, T:0.43
Consensus pattern (23 bp):
CTTCTGTTCCAGCACTGTGTGTG
Found at i:34581189 original size:26 final size:26
Alignment explanation
Indices: 34581153--34581207 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
34581143 CCCTTCTGTT
34581153 CAGCACTGTGTGTGCTTCTGTTTCCC
1 CAGCACTGTGTGTGCTTCTGTTTCCC
34581179 CAGCACTGTGTGTGCTTCTGTTTCCC
1 CAGCACTGTGTGTGCTTCTGTTTCCC
34581205 CAG
1 CAG
34581208 TTGTTATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.09, C:0.31, G:0.24, T:0.36
Consensus pattern (26 bp):
CAGCACTGTGTGTGCTTCTGTTTCCC
Found at i:34584635 original size:42 final size:42
Alignment explanation
Indices: 34584583--34584665 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
34584573 AGGATGCTAG
34584583 TCACAGCGCTTCCACTAGCCTTTTCTTCTCACATTAGGATAA
1 TCACAGCGCTTCCACTAGCCTTTTCTTCTCACATTAGGATAA
34584625 TCACAGCGCTTCCACTAGCCTTTTCTTCTCACATTAGGATA
1 TCACAGCGCTTCCACTAGCCTTTTCTTCTCACATTAGGATA
34584666 GTGGCAGTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (42 bp):
TCACAGCGCTTCCACTAGCCTTTTCTTCTCACATTAGGATAA
Found at i:34586168 original size:16 final size:18
Alignment explanation
Indices: 34586129--34586162 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34586119 TAAGTTTATA
34586129 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
34586146 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
34586163 AATTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:34588239 original size:27 final size:26
Alignment explanation
Indices: 34588201--34588252 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
34588191 TTTTGACAAC
* *
34588201 TTTTTTTAATTTGGTATTTAAATTTT
1 TTTTTTTAATTTGATATTCAAATTTT
34588227 TTTTGTTTAATTTGATATTCAAATTT
1 TTTT-TTTAATTTGATATTCAAATTT
34588253 GACATAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (26 bp):
TTTTTTTAATTTGATATTCAAATTTT
Found at i:34591801 original size:31 final size:31
Alignment explanation
Indices: 34591766--34591833 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
34591756 TTTGATACTC
*
34591766 AAACTTGATACTATTTTTTAATTTGGTACCT
1 AAACTTGATACTATTTTTTAAGTTGGTACCT
* *
34591797 AAACTTGATACTTTTTTTTAAGTTGGTACTT
1 AAACTTGATACTATTTTTTAAGTTGGTACCT
34591828 AAACTT
1 AAACTT
34591834 TTTAGGGTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (31 bp):
AAACTTGATACTATTTTTTAAGTTGGTACCT
Found at i:34592070 original size:29 final size:30
Alignment explanation
Indices: 34592016--34592088 Score: 121
Period size: 29 Copynumber: 2.5 Consensus size: 30
34592006 AAAAATAAAA
*
34592016 ATTAATTATGAAAAAAGTATGAAAAAATAT
1 ATTAATTACGAAAAAAGTATGAAAAAATAT
34592046 ATTAATTACGAAAAAAGTATG-AAAAATAT
1 ATTAATTACGAAAAAAGTATGAAAAAATAT
*
34592075 ATTAATTACTAAAA
1 ATTAATTACGAAAA
34592089 TAGGTATTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 21 0.51
30 20 0.49
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (30 bp):
ATTAATTACGAAAAAAGTATGAAAAAATAT
Found at i:34595604 original size:28 final size:29
Alignment explanation
Indices: 34595550--34595639 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 29
34595540 CTGATAACGT
* * *
34595550 ATTATAAAATAAAA-AAGTTTAGGTATCAA
1 ATTAGAAAA-AAAATAAGTTCAGATATCAA
* *
34595579 ATTTG-GAAAAAATAAGTTCAGATATCAA
1 ATTAGAAAAAAAATAAGTTCAGATATCAA
*
34595607 ATTAGAAAAAAATATCAAATTCAGATATCAA
1 ATTAGAAAAAAA-AT-AAGTTCAGATATCAA
34595638 AT
1 AT
34595640 GTTATATTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
27 4 0.08
28 19 0.39
29 8 0.16
30 2 0.04
31 16 0.33
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (29 bp):
ATTAGAAAAAAAATAAGTTCAGATATCAA
Found at i:34596529 original size:12 final size:12
Alignment explanation
Indices: 34596512--34596536 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34596502 GAACATGTGG
34596512 TTTTAATTGTTT
1 TTTTAATTGTTT
34596524 TTTTAATTGTTT
1 TTTTAATTGTTT
34596536 T
1 T
34596537 ACCGAAAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTAATTGTTT
Found at i:34603754 original size:93 final size:93
Alignment explanation
Indices: 34603580--34603761 Score: 215
Period size: 93 Copynumber: 2.0 Consensus size: 93
34603570 GCTCGTGTGG
* * *
34603580 TTCCTGCCGACCATTCTTCTGCACCAGTCATCGGTTGTAACGCGAAAGGGTATACCCCTGTTAAT
1 TTCCTGCCGACCATTCTTCTGCACCAGTCATCGGTGGTAACGCGAAAGGGCATACCCCTGTTAAC
* *
34603645 GGAGAACCATGCCCTCCTCCAAATGCGC
66 GGAGAACCAGGCCCTCCACCAAATGCGC
* * * * * *
34603673 TTCCTGCTGATCATT-TGTCTGCACCAGTCATCGGTGGTGACGTGACAGGGCATACCCCTGTTTA
1 TTCCTGCCGACCATTCT-TCTGCACCAGTCATCGGTGGTAACGCGAAAGGGCATACCCCTGTTAA
* *
34603737 CGGCA-AATCAGGTCCTCCACCAAAT
65 CGG-AGAACCAGGCCCTCCACCAAAT
34603762 TAAATCAACT
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
92 1 0.01
93 72 0.97
94 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (93 bp):
TTCCTGCCGACCATTCTTCTGCACCAGTCATCGGTGGTAACGCGAAAGGGCATACCCCTGTTAAC
GGAGAACCAGGCCCTCCACCAAATGCGC
Found at i:34603795 original size:6 final size:6
Alignment explanation
Indices: 34603784--34603823 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
34603774 CTTATGGTTT
34603784 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTC
1 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTC
34603824 TTTATATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.15, C:0.50, G:0.00, T:0.35
Consensus pattern (6 bp):
TCTCCA
Found at i:34615894 original size:15 final size:15
Alignment explanation
Indices: 34615870--34615915 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
34615860 AATTTTTTTT
34615870 AGGCTGCTAAAGAAG
1 AGGCTGCTAAAGAAG
*
34615885 AGGTTGCTAAAGAAG
1 AGGCTGCTAAAGAAG
34615900 AGGCTGCTAAAGAAG
1 AGGCTGCTAAAGAAG
34615915 A
1 A
34615916 AGAAGAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.41, C:0.11, G:0.33, T:0.15
Consensus pattern (15 bp):
AGGCTGCTAAAGAAG
Found at i:34615939 original size:21 final size:21
Alignment explanation
Indices: 34615915--34616046 Score: 210
Period size: 21 Copynumber: 6.3 Consensus size: 21
34615905 GCTAAAGAAG
* *
34615915 AAGAAGAAAAGAACAGGGGAA
1 AAGAAGAAAAGGACAGTGGAA
*
34615936 AAGAAGAAAAGGAGAGTGGAA
1 AAGAAGAAAAGGACAGTGGAA
*
34615957 AAGAAGAAAAGGACATTGGAA
1 AAGAAGAAAAGGACAGTGGAA
*
34615978 AAGAAGAAAAGGACATTGGAA
1 AAGAAGAAAAGGACAGTGGAA
34615999 AAGAAGAAAAGGACAGTGGAA
1 AAGAAGAAAAGGACAGTGGAA
*
34616020 AAGAAGAAATGGACAGTGGAA
1 AAGAAGAAAAGGACAGTGGAA
34616041 AAGAAG
1 AAGAAG
34616047 TCGAGGAACC
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 104 1.00
ACGTcount: A:0.58, C:0.04, G:0.33, T:0.06
Consensus pattern (21 bp):
AAGAAGAAAAGGACAGTGGAA
Found at i:34621379 original size:22 final size:23
Alignment explanation
Indices: 34621332--34621381 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
34621322 GTCATTGTGT
*
34621332 TTTTATTTTCAAGAATTTAAGCC
1 TTTTATTTTCAAGAATTTAAGAC
*
34621355 TTTTACTTTTC-AG-ATTTCAGAC
1 TTTTA-TTTTCAAGAATTTAAGAC
34621377 TTTTA
1 TTTTA
34621382 GTCCAACTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.50
23 7 0.29
24 5 0.21
ACGTcount: A:0.26, C:0.14, G:0.08, T:0.52
Consensus pattern (23 bp):
TTTTATTTTCAAGAATTTAAGAC
Found at i:34629940 original size:18 final size:18
Alignment explanation
Indices: 34629917--34629959 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
34629907 GTTCAATGTG
34629917 TAATTAATTCAAAATT-TT
1 TAATTAATT-AAAATTATT
*
34629935 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
34629953 TAATTAA
1 TAATTAA
34629960 AAACTTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:34634419 original size:29 final size:30
Alignment explanation
Indices: 34634368--34634426 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
34634358 TAATTTAATC
34634368 AAATCAAAATTTCATGTAAAAAATTACACA
1 AAATCAAAATTTCATGTAAAAAATTACACA
* *
34634398 AAATCAAAA-TTCTTGTATAAAATTACACA
1 AAATCAAAATTTCATGTAAAAAATTACACA
34634427 TTAAACCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATCAAAATTTCATGTAAAAAATTACACA
Found at i:34635957 original size:19 final size:19
Alignment explanation
Indices: 34635912--34635958 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
34635902 TGTTGTTTTC
*
34635912 TTATTGTTTTTTCACTGAT
1 TTATTGTTATTTCACTGAT
**
34635931 TTGCTGTTATTTCACT-AT
1 TTATTGTTATTTCACTGAT
34635949 TATATTGTTA
1 T-TATTGTTA
34635959 CTACTTTGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.60
Consensus pattern (19 bp):
TTATTGTTATTTCACTGAT
Found at i:34667918 original size:4 final size:4
Alignment explanation
Indices: 34667909--34667941 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
34667899 CATATTACAG
*
34667909 GTAT GTAT GTAT GTAT GTAT GTAT GTAC GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
34667942 GGTTATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.24, C:0.03, G:0.27, T:0.45
Consensus pattern (4 bp):
GTAT
Found at i:34672197 original size:19 final size:17
Alignment explanation
Indices: 34672156--34672199 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
34672146 AACATTTTAA
34672156 TTTTAA-TAAAAATAAT
1 TTTTAATTAAAAATAAT
34672172 TTCTTAATTAAATAATATAT
1 TT-TTAATTAAA-AATA-AT
34672192 TTTTAATT
1 TTTTAATT
34672200 CAATTCGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.08
17 4 0.17
18 4 0.17
19 10 0.42
20 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTAATTAAAAATAAT
Found at i:34672459 original size:3 final size:3
Alignment explanation
Indices: 34672453--34672477 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
34672443 ATTGAATTTC
34672453 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
34672478 GATTGGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:34674310 original size:26 final size:26
Alignment explanation
Indices: 34674276--34674326 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
34674266 TATCATTACA
*
34674276 TAATTAAAAATGAACCATAA-ATAATG
1 TAATGAAAAA-GAACCATAACATAATG
*
34674302 TAATGAAAAAGATCCATAACATAAT
1 TAATGAAAAAGAACCATAACATAAT
34674327 TTCTCATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.25
Consensus pattern (26 bp):
TAATGAAAAAGAACCATAACATAATG
Found at i:34674608 original size:15 final size:14
Alignment explanation
Indices: 34674588--34674621 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
34674578 ATTTTTTTAA
*
34674588 TTTTATATATTAATT
1 TTTTATATAAT-ATT
34674603 TTTTATATAATATT
1 TTTTATATAATATT
34674617 TTTTA
1 TTTTA
34674622 AAAAAAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTATATAATATT
Found at i:34692393 original size:30 final size:28
Alignment explanation
Indices: 34692353--34692424 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 28
34692343 CCATATGTAC
*
34692353 TTTATGTATTTTTCTAATTTTTGTAATTTT
1 TTTATATATTTTTCTAA-TTTTG-AATTTT
*
34692383 TTTATATATTTCTTTTTAATTTTGAATTTT
1 TTTATATA-TT-TTTCTAATTTTGAATTTT
34692413 TTTATA-ATTTTT
1 TTTATATATTTTT
34692425 AAATTATTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 3 0.08
28 2 0.05
29 1 0.03
30 19 0.50
31 7 0.18
32 6 0.16
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (28 bp):
TTTATATATTTTTCTAATTTTGAATTTT
Found at i:34700162 original size:3 final size:3
Alignment explanation
Indices: 34700154--34700202 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
34700144 AACTTAAATT
34700154 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34700202 T
1 T
34700203 ACCAAAGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:34703899 original size:24 final size:22
Alignment explanation
Indices: 34703865--34703912 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
34703855 TTTATAAGAG
*
34703865 TTAATAATATAATTTTATCATT
1 TTAATAATATAATTTTATAATT
*
34703887 TTAATAATTTATATTTTTATAATT
1 TTAATAA--TATAATTTTATAATT
34703911 TT
1 TT
34703913 TTTAACATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
24 15 0.68
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTAATAATATAATTTTATAATT
Found at i:34703908 original size:15 final size:16
Alignment explanation
Indices: 34703872--34703911 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
34703862 GAGTTAATAA
34703872 TATAATTTTATCATTTT
1 TATAA-TTTATCATTTT
*
34703889 AATAATTTAT-ATTTT
1 TATAATTTATCATTTT
34703904 TATAATTT
1 TATAATTT
34703912 TTTTAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 12 0.57
16 5 0.24
17 4 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TATAATTTATCATTTT
Found at i:34705484 original size:13 final size:13
Alignment explanation
Indices: 34705466--34705500 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
34705456 TCTTTAACCC
34705466 AACAAAATTGAAA
1 AACAAAATTGAAA
*
34705479 AACAAAATTGATA
1 AACAAAATTGAAA
*
34705492 AATAAAATT
1 AACAAAATT
34705501 TTGTTTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (13 bp):
AACAAAATTGAAA
Found at i:34706816 original size:33 final size:33
Alignment explanation
Indices: 34706768--34706852 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
34706758 ATAGGTTAAA
* * *
34706768 TTTTTTTTACTAACTTTTAAGG-GTCC-AAATT
1 TTTTTTTTACCAACTTTTAAGGAGACCTAAAAT
34706799 TATTGTTTTTACCAACTTTT-AGGAGACCTAAAAT
1 T-TT-TTTTTACCAACTTTTAAGGAGACCTAAAAT
34706833 TTTTTTTTATCCAACTTTTA
1 TTTTTTTTA-CCAACTTTTA
34706853 TTATTTTGAC
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
31 1 0.02
32 11 0.24
33 28 0.62
34 5 0.11
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (33 bp):
TTTTTTTTACCAACTTTTAAGGAGACCTAAAAT
Found at i:34707525 original size:21 final size:22
Alignment explanation
Indices: 34707501--34707549 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
34707491 TAATGATAAA
*
34707501 TTTAGTCATTAA-CTTTA-TATT
1 TTTAGTAATTAAGCTTTAGT-TT
*
34707522 TTTATTAATTAAGCTTTAGTTT
1 TTTAGTAATTAAGCTTTAGTTT
34707544 TTTAGT
1 TTTAGT
34707550 TAAAATTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 10 0.43
22 12 0.52
23 1 0.04
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (22 bp):
TTTAGTAATTAAGCTTTAGTTT
Found at i:34707545 original size:22 final size:22
Alignment explanation
Indices: 34707508--34707552 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
34707498 AAATTTAGTC
34707508 ATTAACTTTATATTTTTA-TTA
1 ATTAACTTTATATTTTTAGTTA
34707529 ATTAAGCTTTAGT-TTTTTAGTTA
1 ATTAA-CTTTA-TATTTTTAGTTA
34707552 A
1 A
34707553 AATTGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (22 bp):
ATTAACTTTATATTTTTAGTTA
Found at i:34707750 original size:28 final size:28
Alignment explanation
Indices: 34707718--34707774 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
34707708 AACAAATAAT
34707718 TTAAAAATT-ATAAAGAATTCAAAA-AAAA
1 TTAAAAATTAAT-AA-AATTCAAAAGAAAA
*
34707746 TTAAAAGTTAATAAAATTCAAAAGAAAA
1 TTAAAAATTAATAAAATTCAAAAGAAAA
34707774 T
1 T
34707775 AGAAGGTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 9 0.35
28 15 0.58
29 2 0.08
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (28 bp):
TTAAAAATTAATAAAATTCAAAAGAAAA
Found at i:34708081 original size:31 final size:31
Alignment explanation
Indices: 34708043--34708122 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
34708033 AACTATGGGT
** * *
34708043 AAGTTTTCATTTTGGTCACTGAACTATTTGAA
1 AAGTTTTCATTTAAGTCACTAAACTA-TTCAA
*
34708075 AA-TTTTCATTCAAGTCACTAAACTATTCAA
1 AAGTTTTCATTTAAGTCACTAAACTATTCAA
34708105 AAGTTTTCATTTAAGTCA
1 AAGTTTTCATTTAAGTCA
34708123 ATAGGTTGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.15
31 33 0.80
32 2 0.05
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (31 bp):
AAGTTTTCATTTAAGTCACTAAACTATTCAA
Found at i:34710955 original size:6 final size:6
Alignment explanation
Indices: 34710947--34710985 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
34710937 AATCTTAACA
* *
34710947 TTAATA TTAA-T TAAATT TTAATT TTAATT TTAATT TTAA
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAA
34710986 AATCTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 3 0.10
6 26 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (6 bp):
TTAATT
Found at i:34710962 original size:23 final size:23
Alignment explanation
Indices: 34710936--34710981 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
34710926 GTAATGGATA
34710936 AAATCTTAACATTAATATTAATT
1 AAATCTTAACATTAATATTAATT
* ** *
34710959 AAATTTTAATTTTAATTTTAATT
1 AAATCTTAACATTAATATTAATT
34710982 TTAAAATCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (23 bp):
AAATCTTAACATTAATATTAATT
Found at i:34713695 original size:26 final size:26
Alignment explanation
Indices: 34713642--34713695 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
34713632 CCAGGTTACA
*
34713642 TTTTAGTCACTTATGTTAATGTTATG
1 TTTTAGTCACTTATGTTAATATTATG
*
34713668 TTTTAGTCACTTATGTTAATATTTTG
1 TTTTAGTCACTTATGTTAATATTATG
34713694 TT
1 TT
34713696 ACGAAGTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.07, G:0.13, T:0.57
Consensus pattern (26 bp):
TTTTAGTCACTTATGTTAATATTATG
Found at i:34716393 original size:3 final size:3
Alignment explanation
Indices: 34716385--34716412 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
34716375 CACACGAAAC
34716385 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
34716413 ATAATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:34717388 original size:59 final size:61
Alignment explanation
Indices: 34717321--34717458 Score: 181
Period size: 59 Copynumber: 2.3 Consensus size: 61
34717311 TTTTTCATAT
*
34717321 ATTTGGTACTTAAATTTGACATTTTTTT-TAATTTAGTACCTAAACTTTTTTT-GGACCCA
1 ATTTGGTACTTAAATTTGACATTTTTTTATAATTTAGTACCTAAACTTTTTTTAAGACCCA
* * * * * **
34717380 ATTTGGTACTTGAACTTGACATTTTTTTACTAATTTGGTATCTAAATTTTTTTTAAGATTCA
1 ATTTGGTACTTAAATTTGACATTTTTTTA-TAATTTAGTACCTAAACTTTTTTTAAGACCCA
34717442 ATTTGGTACTTAAATTT
1 ATTTGGTACTTAAATTT
34717459 ATTAAATATT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
59 26 0.39
61 21 0.32
62 19 0.29
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.51
Consensus pattern (61 bp):
ATTTGGTACTTAAATTTGACATTTTTTTATAATTTAGTACCTAAACTTTTTTTAAGACCCA
Found at i:34717716 original size:31 final size:31
Alignment explanation
Indices: 34717653--34717791 Score: 135
Period size: 31 Copynumber: 4.5 Consensus size: 31
34717643 GGACCCCAAA
* * **
34717653 AAGTTTAAGTATCAACTTAAAAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGGAAAAAA-TGTC
*
34717685 AAGTTTAGGTACCAAATTAGGAAAAAATGTC
1 AAGTTTAAGTACCAAATTAGGAAAAAATGTC
34717716 AAGTTTAAGTACCAAATT-GGACCAAAAA----
1 AAGTTTAAGTACCAAATTAGGA--AAAAATGTC
* * *
34717744 AAATTTAAGTACCAAATTAAGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGGAAAAAATGTC
*
34717775 AAGTTTATGTACCAAAT
1 AAGTTTAAGTACCAAAT
34717792 GTTATATTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
27 4 0.04
28 17 0.19
29 2 0.02
30 3 0.03
31 36 0.40
32 27 0.30
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGGAAAAAATGTC
Found at i:34717777 original size:90 final size:90
Alignment explanation
Indices: 34717599--34717791 Score: 264
Period size: 91 Copynumber: 2.1 Consensus size: 90
34717589 TTAAAAAATA
* ** *
34717599 TTAGGTACCAAATTAGAAAAATAATCAAGTTCAAGTATCAAATTGGACCCCAAAAAGTTTAAGTA
1 TTAGGTACCAAATTAGAAAAATAATCAAGTTCAAGTACCAAATTGGACCAAAAAAAATTTAAGTA
* *
34717664 TCAACTTAAAAAAAAAGTGTCAAGT
66 CCAAATTAAAAAAAAAGTGTCAAGT
* *
34717689 TTAGGTACCAAATTAGGAAAAA-ATGTCAAGTTTAAGTACCAAATTGGACCAAAAAAAATTTAAG
1 TTAGGTACCAAATTA-GAAAAATA-ATCAAGTTCAAGTACCAAATTGGACCAAAAAAAATTTAAG
*
34717753 TACCAAATT-AAGAAAAAGTGTCAAGT
64 TACCAAATTAAAAAAAAAGTGTCAAGT
*
34717779 TTATGTACCAAAT
1 TTAGGTACCAAAT
34717792 GTTATATTAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
90 44 0.48
91 47 0.52
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (90 bp):
TTAGGTACCAAATTAGAAAAATAATCAAGTTCAAGTACCAAATTGGACCAAAAAAAATTTAAGTA
CCAAATTAAAAAAAAAGTGTCAAGT
Found at i:34722592 original size:109 final size:108
Alignment explanation
Indices: 34722391--34722610 Score: 309
Period size: 109 Copynumber: 2.0 Consensus size: 108
34722381 AGAACCTCTT
* * * *
34722391 GAAGGATCCATGAACGGGAGTGAAGATCTCAATAGCAGCATATCAATGAGAATTGGAGATCGGTT
1 GAAGGATCCATGAACGGGAGTGAAGAGCTCAAGAGCAGCAGATCAATGAGAATCGGAGATCGGTT
* * * *
34722456 CAAAGCATTGAAGCACCTTCACTGATCGATACGAAGAGTGAGA
66 CAAAGCATCGAAACACCTTCACGGATCGATACGAAGAGTAAGA
* *
34722499 GAAGGATCCATTG-ACGGGAGTGAAGAGCTCGAGAGCAGCAGATCGAATGAGAATCGGAGATTGG
1 GAAGGATCCA-TGAACGGGAGTGAAGAGCTCAAGAGCAGCAGATC-AATGAGAATCGGAGATCGG
34722563 TTCAAAGCATCGAAACAGCC-TCACGGATCGATACGAAGAGTAAGA
64 TTCAAAGCATCGAAACA-CCTTCACGGATCGATACGAAGAGTAAGA
34722608 GAA
1 GAA
34722611 CCATAAATAC
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
108 37 0.37
109 60 0.61
110 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (108 bp):
GAAGGATCCATGAACGGGAGTGAAGAGCTCAAGAGCAGCAGATCAATGAGAATCGGAGATCGGTT
CAAAGCATCGAAACACCTTCACGGATCGATACGAAGAGTAAGA
Found at i:34731514 original size:13 final size:13
Alignment explanation
Indices: 34731496--34731521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34731486 AAAATGTATT
34731496 TATTAATTAAAAA
1 TATTAATTAAAAA
34731509 TATTAATTAAAAA
1 TATTAATTAAAAA
34731522 ATTTGAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:34742704 original size:22 final size:21
Alignment explanation
Indices: 34742669--34742771 Score: 109
Period size: 22 Copynumber: 4.8 Consensus size: 21
34742659 ATTATATTGT
* *
34742669 TGTTTTTGTGCTATTTTGTGC
1 TGTTTTGGTGCTATTTTTTGC
34742690 TGTTTTGGTTGCTATTTTTTGC
1 TGTTTTGG-TGCTATTTTTTGC
* * *
34742712 TATTTTGGTGTTATGTTTTTAC
1 TGTTTTGGTGCTAT-TTTTTGC
* *
34742734 TGTTTTGATGCT-TTTTTTAC
1 TGTTTTGGTGCTATTTTTTGC
34742754 TGTTTTGGTTGCTATTTT
1 TGTTTTGG-TGCTATTTT
34742772 GGTGCTATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
20 14 0.20
21 17 0.25
22 38 0.55
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (21 bp):
TGTTTTGGTGCTATTTTTTGC
Found at i:34742808 original size:57 final size:54
Alignment explanation
Indices: 34742708--34742814 Score: 126
Period size: 57 Copynumber: 1.9 Consensus size: 54
34742698 TTGCTATTTT
* *
34742708 TTGCTATTTTGGTGTTATGTTTTTACTGTTTTGATGCTTTTTTTACTGTTTTGG
1 TTGCTATTTTGGTGTTATGTTTTTACTATTTTGATGATTTTTTTACTGTTTTGG
* * *
34742762 TTGCTATTTTGGTGCTATTTGTTTTTTACTATTTTGGT-ATTGTTTTTATTGTT
1 TTGCTATTTTGGTG-T-TATG-TTTTTACTATTTTGATGATT-TTTTTACTGTT
34742815 ATTTTTATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 14 0.32
55 1 0.02
56 5 0.11
57 24 0.55
ACGTcount: A:0.10, C:0.07, G:0.19, T:0.64
Consensus pattern (54 bp):
TTGCTATTTTGGTGTTATGTTTTTACTATTTTGATGATTTTTTTACTGTTTTGG
Found at i:34742819 original size:12 final size:12
Alignment explanation
Indices: 34742804--34742866 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
34742794 TTTGGTATTG
34742804 TTTTTATTGTTA
1 TTTTTATTGTTA
*
34742816 TTTTTATTGCTA
1 TTTTTATTGTTA
*
34742828 TTTTT-TTATTA
1 TTTTTATTGTTA
** *
34742839 TTTTTGCTGCTA
1 TTTTTATTGTTA
**
34742851 TTTTGGTTGTTA
1 TTTTTATTGTTA
34742863 TTTT
1 TTTT
34742867 GGTTGTTTGG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
11 9 0.22
12 32 0.78
ACGTcount: A:0.13, C:0.05, G:0.11, T:0.71
Consensus pattern (12 bp):
TTTTTATTGTTA
Found at i:34742831 original size:23 final size:23
Alignment explanation
Indices: 34742805--34742866 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
34742795 TTGGTATTGT
*
34742805 TTTTATTGTTATTTTTATTGCTA
1 TTTTATTGTTATTTTTACTGCTA
* * *
34742828 TTTTTTTATTATTTTTGCTGCTA
1 TTTTATTGTTATTTTTACTGCTA
*
34742851 TTTTGGTTGTTATTTT
1 TTTT-ATTGTTATTTT
34742867 GGTTGTTTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 23 0.72
24 9 0.28
ACGTcount: A:0.13, C:0.05, G:0.11, T:0.71
Consensus pattern (23 bp):
TTTTATTGTTATTTTTACTGCTA
Found at i:34742867 original size:12 final size:12
Alignment explanation
Indices: 34742849--34742873 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34742839 TTTTTGCTGC
34742849 TATTTTGGTTGT
1 TATTTTGGTTGT
34742861 TATTTTGGTTGT
1 TATTTTGGTTGT
34742873 T
1 T
34742874 TGGATGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (12 bp):
TATTTTGGTTGT
Found at i:34746059 original size:28 final size:27
Alignment explanation
Indices: 34746020--34746073 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
34746010 GAGTTTGACA
*
34746020 TTTTTTCTAATGTGATATTTGTATTTT
1 TTTTTTCCAATGTGATATTTGTATTTT
34746047 TTTTTGTCCAATGTGATATTTGTATTT
1 TTTTT-TCCAATGTGATATTTGTATTT
34746074 GACAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.63
Consensus pattern (27 bp):
TTTTTTCCAATGTGATATTTGTATTTT
Found at i:34748915 original size:21 final size:21
Alignment explanation
Indices: 34748865--34748916 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
34748855 AAAATATATT
*
34748865 TTTATTTT-CTTAATTTTCCC
1 TTTATTTTCCTCAATTTTCCC
* *
34748885 TTCT-TCTTCCTCAATTTTCTC
1 TT-TATTTTCCTCAATTTTCCC
34748906 TTTATTTTCCT
1 TTTATTTTCCT
34748917 TGTCATTTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTATTTTCCTCAATTTTCCC
Found at i:34756961 original size:4 final size:4
Alignment explanation
Indices: 34756954--34757076 Score: 237
Period size: 4 Copynumber: 30.8 Consensus size: 4
34756944 CCACACACAC
34756954 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
34757002 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
34757050 ATGT ATGT ATGT ATGT ATCT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATG
34757077 CAATGCCTAT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 117 1.00
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:34760180 original size:23 final size:26
Alignment explanation
Indices: 34760147--34760209 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 26
34760137 AATTTAGATA
*
34760147 ATTTTGAATTTTATAA-GTTATAA-T-
1 ATTTT-AATTTTATAATGTAATAATTC
34760171 ATTTTAATTTTA-AATGTAATAATTC
1 ATTTTAATTTTATAATGTAATAATTC
*
34760196 ATTTTACTTTTATA
1 ATTTTAATTTTATA
34760210 CGATGGCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 13 0.39
24 6 0.18
25 11 0.33
26 1 0.03
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.56
Consensus pattern (26 bp):
ATTTTAATTTTATAATGTAATAATTC
Found at i:34766940 original size:19 final size:19
Alignment explanation
Indices: 34766908--34767022 Score: 67
Period size: 19 Copynumber: 5.9 Consensus size: 19
34766898 TTTTATCATA
*
34766908 AAAATGATTA-AAAAGTAAT
1 AAAAT-ATTATAAAAATAAT
*
34766927 AAAATATTATAAAAATCAT
1 AAAATATTATAAAAATAAT
* * *
34766946 AAAAAATTAT-CAAATATT
1 AAAATATTATAAAAATAAT
* * *
34766964 AAAACA-TATGAAAATTGAT
1 AAAATATTAT-AAAAATAAT
*
34766983 ATAAA-ATTATAAAAAATTATT
1 A-AAATATTAT-AAAAA-TAAT
34767004 AAAAATATTATAAAAATAA
1 -AAAATATTATAAAAATAA
34767023 ATTCTAAAAG
Statistics
Matches: 72, Mismatches: 16, Indels: 15
0.70 0.16 0.15
Matches are distributed among these distances:
17 3 0.04
18 14 0.19
19 27 0.38
20 12 0.17
21 10 0.14
22 6 0.08
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAATATTATAAAAATAAT
Found at i:34766948 original size:29 final size:28
Alignment explanation
Indices: 34766905--34766997 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
34766895 TATTTTTATC
*
34766905 ATAAAAATGATTAAAAAGTAATAAAATATT
1 ATAAAAAT-A-TAAAAAATAATAAAATATT
* *
34766935 ATAAAAATCATAAAAAATTATCAAATATT
1 ATAAAAAT-ATAAAAAATAATAAAATATT
* * * *
34766964 A-AAACATATGAAAATTGATATAAA-ATT
1 ATAAAAATATAAAAAATAATA-AAATATT
34766991 ATAAAAA
1 ATAAAAA
34766998 ATTATTAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
27 13 0.25
28 12 0.24
29 17 0.33
30 9 0.18
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (28 bp):
ATAAAAATATAAAAAATAATAAAATATT
Found at i:34767158 original size:9 final size:9
Alignment explanation
Indices: 34766905--34767161 Score: 73
Period size: 10 Copynumber: 26.8 Consensus size: 9
34766895 TATTTTTATC
*
34766905 ATAAAAATG
1 ATAAAAATT
*
34766914 ATTAAAAAGTA
1 A-TAAAAA-TT
34766925 ATAAAATATT
1 ATAAAA-ATT
*
34766935 ATAAAAATC
1 ATAAAAATT
34766944 ATAAAAAATT
1 AT-AAAAATT
*
34766954 ATCAAATATT
1 AT-AAAAATT
*
34766964 A-AAACA-T
1 ATAAAAATT
*
34766971 ATGAAAATT
1 ATAAAAATT
34766980 GATATAAAATT
1 -ATA-AAAATT
34766991 ATAAAAAATT
1 AT-AAAAATT
34767001 ATTAAAAA-T
1 A-TAAAAATT
34767010 ATTATAAAA--
1 A-TA-AAAATT
34767019 AT--AAATT
1 ATAAAAATT
*
34767026 CTAAAAGAATT
1 AT-AAA-AATT
34767037 -TAAAACATT
1 ATAAAA-ATT
34767046 AATAAAATATAT
1 -ATAAAA-AT-T
* *
34767058 TTAAAATTTT
1 ATAAAA-ATT
34767068 ATAAGAACA-T
1 ATAA-AA-ATT
* *
34767078 ATTAATATT
1 ATAAAAATT
*
34767087 ATACAAAAATC
1 AT--AAAAATT
34767098 ATAAAAATT
1 ATAAAAATT
*
34767107 ATAAAAAGT
1 ATAAAAATT
* *
34767116 ACTAAAAGTAC
1 A-TAAAAAT-T
*
34767127 AAAAAAATT
1 ATAAAAATT
*
34767136 ATATAAACTT
1 ATA-AAAATT
34767146 ATAAAAATT
1 ATAAAAATT
34767155 ATAAAAA
1 ATAAAAA
34767162 AAATCATAAA
Statistics
Matches: 187, Mismatches: 33, Indels: 56
0.68 0.12 0.20
Matches are distributed among these distances:
5 3 0.02
7 3 0.02
8 10 0.05
9 51 0.27
10 81 0.43
11 38 0.20
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:34769841 original size:9 final size:8
Alignment explanation
Indices: 34769798--34769840 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
34769788 AATGGCGAAG
34769798 AGTAAAAA
1 AGTAAAAA
34769806 AGTTAAAAAA
1 AG-T-AAAAA
*
34769816 AGTAAAAC
1 AGTAAAAA
*
34769824 AGTGAAAA
1 AGTAAAAA
34769832 AGTAAAAA
1 AGTAAAAA
34769840 A
1 A
34769841 AAAAAAACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 20 0.69
9 2 0.07
10 7 0.24
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (8 bp):
AGTAAAAA
Found at i:34769863 original size:26 final size:26
Alignment explanation
Indices: 34769801--34769868 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 26
34769791 GGCGAAGAGT
** *
34769801 AAAAAAGTTAAAAAAAGTAAAACAGT
1 AAAAAAGTTAAAAAAAAAAAAACAGA
*
34769827 GAAAAAG-TAAAAAAAAAAAAACA-A
1 AAAAAAGTTAAAAAAAAAAAAACAGA
*
34769851 AATAAAAGTTAAATAAAA
1 AA-AAAAGTTAAAAAAAA
34769869 GAAATTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 19 0.56
26 14 0.41
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.13
Consensus pattern (26 bp):
AAAAAAGTTAAAAAAAAAAAAACAGA
Found at i:34770789 original size:24 final size:23
Alignment explanation
Indices: 34770746--34770794 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
34770736 AGTAATAATC
* *
34770746 TTAATATTTTATTAGGAAATTATA
1 TTAATATTTTAATAAGAAA-TATA
*
34770770 TTAATATTTTAATAATAAATATA
1 TTAATATTTTAATAAGAAATATA
34770793 TT
1 TT
34770795 GTAATTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
TTAATATTTTAATAAGAAATATA
Found at i:34771947 original size:24 final size:23
Alignment explanation
Indices: 34771915--34771978 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
34771905 GAATTTAACC
34771915 AAAAAAATT-AATAATGTTAAAAAT
1 AAAAAAATTAAATAAT-TT-AAAAT
* *
34771939 TAAAAAATTAAATTATTTAAAAT
1 AAAAAAATTAAATAATTTAAAAT
34771962 AAAAAAATTGAAA-AATT
1 AAAAAAATT-AAATAATT
34771979 AAATTCCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 16 0.47
24 13 0.38
25 5 0.15
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (23 bp):
AAAAAAATTAAATAATTTAAAAT
Found at i:34771960 original size:23 final size:24
Alignment explanation
Indices: 34771915--34771970 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
34771905 GAATTTAACC
34771915 AAAAAAATTAATAATGTTAAAAAT
1 AAAAAAATTAATAATGTTAAAAAT
* *
34771939 TAAAAAATTAAATTAT-TT-AAAAT
1 AAAAAAATT-AATAATGTTAAAAAT
34771962 AAAAAAATT
1 AAAAAAATT
34771971 GAAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.46
24 10 0.36
25 5 0.18
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
AAAAAAATTAATAATGTTAAAAAT
Found at i:34771998 original size:31 final size:31
Alignment explanation
Indices: 34771933--34771999 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
34771923 TAATAATGTT
**
34771933 AAAAATTAAAAAATTAAATTATTTAAAATAA
1 AAAAATTAAAAAATTAAATTATCCAAAATAA
*
34771964 AAAAATTGAAAAATTAAA-T-TCCAAACATATA
1 AAAAATTAAAAAATTAAATTATCCAAA-ATA-A
34771995 AAAAA
1 AAAAA
34772000 AATACAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 4 0.13
30 4 0.13
31 23 0.74
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (31 bp):
AAAAATTAAAAAATTAAATTATCCAAAATAA
Found at i:34778503 original size:32 final size:32
Alignment explanation
Indices: 34778449--34778530 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
34778439 AAAAGTTTAA
* * * *
34778449 GTACCAATTTAAG-AAAAAGTGTCAAGTTTTG
1 GTACCAAATTAGGAAAAAAGTGTCAAATTTGG
34778480 GTACCAAATTAGGAAAAAAGTGTCAAATTTGG
1 GTACCAAATTAGGAAAAAAGTGTCAAATTTGG
34778512 GTACCAAATT-GGACAAAAA
1 GTACCAAATTAGGA-AAAAA
34778531 AAGTTTTGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 14 0.31
32 31 0.69
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.26
Consensus pattern (32 bp):
GTACCAAATTAGGAAAAAAGTGTCAAATTTGG
Found at i:34785698 original size:26 final size:26
Alignment explanation
Indices: 34785664--34785716 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34785654 GTCACTGAAT
*
34785664 TATTTGAAAATTTTCATTTAAATCAC
1 TATTCGAAAATTTTCATTTAAATCAC
* * *
34785690 TATTCGAAAGTTTTTATTTATATCAC
1 TATTCGAAAATTTTCATTTAAATCAC
34785716 T
1 T
34785717 GAGCTATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (26 bp):
TATTCGAAAATTTTCATTTAAATCAC
Found at i:34786753 original size:80 final size:76
Alignment explanation
Indices: 34786622--34786769 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 76
34786612 AATATGCCCT
*
34786622 CGGACCTGTACTCCTCAGGCGTTTACAATTTAATCCCTCTAGTTTTATTTTTTTTGAAAAACTTA
1 CGGACCTATACTCCTCAGGCGTTTACAATTTAATCCCTCTAGTTTTA---TTTTT-AAAAACTTA
34786687 ATCCTTTACTTTGAA
62 ATCCTTTACTTTGAA
* * *
34786702 CGGACCTATACTCTTCAGGC-TTGTACAATTTAATTCCTCT-GCTTTTGTTTTTAAAAACTTAAT
1 CGGACCTATACTCCTCAGGCGTT-TACAATTTAATCCCTCTAG-TTTTATTTTTAAAAACTTAAT
34786765 CCTTT
64 CCTTT
34786770 GGTTTAATTG
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
76 16 0.26
77 5 0.08
79 3 0.05
80 38 0.61
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (76 bp):
CGGACCTATACTCCTCAGGCGTTTACAATTTAATCCCTCTAGTTTTATTTTTAAAAACTTAATCC
TTTACTTTGAA
Found at i:34787535 original size:13 final size:14
Alignment explanation
Indices: 34787517--34787545 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34787507 ATTAAAAAGC
34787517 TTTCCATTTT-TGT
1 TTTCCATTTTATGT
34787530 TTTCCATTTTATGT
1 TTTCCATTTTATGT
34787544 TT
1 TT
34787546 CTTAGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.14, G:0.07, T:0.69
Consensus pattern (14 bp):
TTTCCATTTTATGT
Found at i:34809082 original size:6 final size:6
Alignment explanation
Indices: 34809071--34809114 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
34809061 TTCCCTTCTC
34809071 CATCCT CATCCT CATCCT CATCCT CATCCT CATCCT CATCCT CA
1 CATCCT CATCCT CATCCT CATCCT CATCCT CATCCT CATCCT CA
34809115 CCATTTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.18, C:0.50, G:0.00, T:0.32
Consensus pattern (6 bp):
CATCCT
Found at i:34820168 original size:18 final size:17
Alignment explanation
Indices: 34820141--34820174 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34820131 TTTAAGTTTA
34820141 TTTAATTTTTTAATAAT
1 TTTAATTTTTTAATAAT
*
34820158 TTTAATATTTTTTATAA
1 TTTAAT-TTTTTAATAA
34820175 AGTATACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATTTTTTAATAAT
Found at i:34820756 original size:17 final size:18
Alignment explanation
Indices: 34820724--34820757 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34820714 AAATTTATTT
34820724 TTTAAACTCAATTTAAAA
1 TTTAAACTCAATTTAAAA
*
34820742 TTTAAATTC-ATTTAAA
1 TTTAAACTCAATTTAAA
34820758 TTAATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTAAACTCAATTTAAAA
Found at i:34820916 original size:21 final size:20
Alignment explanation
Indices: 34820870--34820916 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
34820860 TCTAAATTTG
*
34820870 AAATTTTCATTTAATTTTTT
1 AAATTTTCATATAATTTTTT
*
34820890 ATATTTTC-TATATATTTTTAT
1 AAATTTTCATATA-ATTTTT-T
34820911 AAATTT
1 AAATTT
34820917 CTAAATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 3 0.14
20 13 0.59
21 6 0.27
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
AAATTTTCATATAATTTTTT
Found at i:34824280 original size:13 final size:13
Alignment explanation
Indices: 34824262--34824296 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
34824252 TAATATTTTA
34824262 TTTTTTTTCTAGG
1 TTTTTTTTCTAGG
*
34824275 TTTTTTTTCTAGT
1 TTTTTTTTCTAGG
34824288 TTTTTTTTC
1 TTTTTTTTC
34824297 AAATTTTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.09, G:0.09, T:0.77
Consensus pattern (13 bp):
TTTTTTTTCTAGG
Found at i:34827599 original size:17 final size:17
Alignment explanation
Indices: 34827577--34827611 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
34827567 CCAGGTAGTG
34827577 ATCTGTTTTTTTTAGAT
1 ATCTGTTTTTTTTAGAT
34827594 ATCTGTTTTTTTTAGAT
1 ATCTGTTTTTTTTAGAT
34827611 A
1 A
34827612 ACATAATGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (17 bp):
ATCTGTTTTTTTTAGAT
Found at i:34835964 original size:92 final size:92
Alignment explanation
Indices: 34835842--34836032 Score: 346
Period size: 92 Copynumber: 2.1 Consensus size: 92
34835832 TTTATGTGTT
* *
34835842 TAAATTTTATTTTACTCACAATTTAATATATATTTTTCATTTTAACATAGTACATATTGCATATA
1 TAAATTTAATTTTACTCACAATTTAATATATATTTTTCATTTTAACATAATACATATTGCATATA
34835907 TCTTTATTATTAATTAATTTTAAACCA
66 TCTTTATTATTAATTAATTTTAAACCA
*
34835934 TAAATTTAATTTTACTCACAATTTAATATATATTTTTTATTTTAACATAATACATATTGCATATA
1 TAAATTTAATTTTACTCACAATTTAATATATATTTTTCATTTTAACATAATACATATTGCATATA
34835999 TCTTTATTATTAATTAATTTTAAACCA
66 TCTTTATTATTAATTAATTTTAAACCA
*
34836026 TACATTT
1 TAAATTT
34836033 TACTATTTTT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (92 bp):
TAAATTTAATTTTACTCACAATTTAATATATATTTTTCATTTTAACATAATACATATTGCATATA
TCTTTATTATTAATTAATTTTAAACCA
Found at i:34852951 original size:2 final size:2
Alignment explanation
Indices: 34852944--34852971 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
34852934 CCTGTAAGGC
34852944 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
34852972 TTTCCCTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:34855570 original size:13 final size:13
Alignment explanation
Indices: 34855552--34855577 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34855542 ACCATAAAAA
34855552 ATTTTCATTTTAG
1 ATTTTCATTTTAG
34855565 ATTTTCATTTTAG
1 ATTTTCATTTTAG
34855578 GCACTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
ATTTTCATTTTAG
Found at i:34855859 original size:18 final size:18
Alignment explanation
Indices: 34855821--34855865 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
34855811 AAATTTATAT
*
34855821 TAATATTAAATAAATATAA
1 TAATATT-AATAAATACAA
*
34855840 TAATATTAATAATTACAA
1 TAATATTAATAAATACAA
34855858 TAATATTA
1 TAATATTA
34855866 GTTAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATTAATAAATACAA
Found at i:34856608 original size:10 final size:10
Alignment explanation
Indices: 34856578--34856616 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
34856568 TTAAATATTT
*
34856578 TTTAAAAAAG
1 TTTAAAAAAA
34856588 TTTAAATAAAA
1 TTTAAA-AAAA
34856599 TTTAAAAAAA
1 TTTAAAAAAA
34856609 TTATAAAA
1 TT-TAAAA
34856617 CCCTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 12 0.46
11 14 0.54
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:34858721 original size:30 final size:29
Alignment explanation
Indices: 34858690--34858762 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 29
34858680 AAGATGCAAT
*
34858690 TTTTTGGAAATTTTGGGGTTGAAATGTAA
1 TTTTTGGAAATTTTGGGGTTAAAATGTAA
34858719 -TTTTGGAAAAGTTTTGGGGTTAAAATGTAA
1 TTTTTGG-AAA-TTTTGGGGTTAAAATGTAA
34858749 TTTTTGGACAATTT
1 TTTTTGGA-AATTT
34858763 AGGGACTTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 6 0.15
29 3 0.08
30 22 0.56
31 8 0.21
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (29 bp):
TTTTTGGAAATTTTGGGGTTAAAATGTAA
Found at i:34859404 original size:28 final size:28
Alignment explanation
Indices: 34859365--34859429 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
34859355 AAGCGGTCCT
*
34859365 TTCTTCTTCTTTTTGTT-CCATTTTTCATC
1 TTCTTTTTCTTTTTGTTACC-TTTTT-ATC
*
34859394 TT-TTTTTC-TTTTGTTACCTTTTTATT
1 TTCTTTTTCTTTTTGTTACCTTTTTATC
34859420 TTCTTTTTCT
1 TTCTTTTTCT
34859430 CTCTTATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
26 4 0.13
27 18 0.58
28 7 0.23
29 2 0.06
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.72
Consensus pattern (28 bp):
TTCTTTTTCTTTTTGTTACCTTTTTATC
Found at i:34860429 original size:12 final size:12
Alignment explanation
Indices: 34860408--34860453 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 12
34860398 GACTTTAATT
34860408 TATTAATTTTAA
1 TATTAATTTTAA
*
34860420 TATTATTTTTAA
1 TATTAATTTTAA
*
34860432 -ATTAATTTAAA
1 TATTAATTTTAA
*
34860443 T-TTAAATTTAA
1 TATTAATTTTAA
34860454 AGTAAATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTAATTTTAA
Found at i:34860446 original size:6 final size:6
Alignment explanation
Indices: 34860427--34860530 Score: 78
Period size: 6 Copynumber: 18.0 Consensus size: 6
34860417 TAATATTATT
* *
34860427 TTTAAA -TT-AA TTTAAA TTTAAA TTTAAA -GTAAA TTTAAA TAAATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA
* * *
34860474 TTTAAA TTTAAGA --TAAA TTTAAA TCTAAA -TAAAA TTTAAA ATT-AA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
34860519 TTTAAA CTTAAA
1 TTTAAA TTTAAA
34860531 AATCAAAGTC
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
4 3 0.04
5 18 0.23
6 50 0.65
7 1 0.01
8 5 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:34860447 original size:11 final size:11
Alignment explanation
Indices: 34860427--34860529 Score: 64
Period size: 11 Copynumber: 9.0 Consensus size: 11
34860417 TAATATTATT
34860427 TTTAAA-TTAA
1 TTTAAATTTAA
34860437 TTTAAATTTAAA
1 TTTAAATTT-AA
* *
34860449 TTTAAAGTAAA
1 TTTAAATTTAA
*
34860460 TTTAAATAAATAAA
1 TTTAAAT---TTAA
34860474 TTTAAATTTAA
1 TTTAAATTTAA
**
34860485 GATAAATTTAAA
1 TTTAAATTT-AA
* **
34860497 TCTAAATAAAA
1 TTTAAATTTAA
*
34860508 TTTAAAATTAA
1 TTTAAATTTAA
*
34860519 TTTAAACTTAA
1 TTTAAATTTAA
34860530 AAATCAAAGT
Statistics
Matches: 72, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
10 6 0.08
11 39 0.54
12 16 0.22
14 11 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:34860453 original size:17 final size:17
Alignment explanation
Indices: 34860427--34860530 Score: 101
Period size: 17 Copynumber: 6.4 Consensus size: 17
34860417 TAATATTATT
*
34860427 TTTAAA-TTAATTTAAA
1 TTTAAATTTAAATTAAA
*
34860443 TTTAAATTTAAAGTAAA
1 TTTAAATTTAAATTAAA
34860460 TTTAAA--TAAA-TAAA
1 TTTAAATTTAAATTAAA
34860474 TTTAAATTTAAGA-TAAA
1 TTTAAATTTAA-ATTAAA
* *
34860491 TTTAAATCTAAATAAAA
1 TTTAAATTTAAATTAAA
* *
34860508 TTTAAAATTAATTTAAA
1 TTTAAATTTAAATTAAA
*
34860525 CTTAAA
1 TTTAAA
34860531 AATCAAAGTC
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.14
15 4 0.05
16 10 0.14
17 50 0.68
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (17 bp):
TTTAAATTTAAATTAAA
Found at i:34860497 original size:37 final size:36
Alignment explanation
Indices: 34860429--34860506 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 36
34860419 ATATTATTTT
* *
34860429 TAAATTAATTTAAATTTAAATTTAAAGTAAATTTAAA
1 TAAATAAATTTAAATTTAAA-TTAAAGTAAATCTAAA
*
34860466 TAAATAAATTTAAATTTAAGA-TAAATTTAAATCTAAA
1 TAAATAAATTTAAATTTAA-ATTAAA-GTAAATCTAAA
34860503 TAAA
1 TAAA
34860507 ATTTAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 4 0.11
37 31 0.86
38 1 0.03
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (36 bp):
TAAATAAATTTAAATTTAAATTAAAGTAAATCTAAA
Found at i:34860530 original size:28 final size:28
Alignment explanation
Indices: 34860446--34860524 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 28
34860436 ATTTAAATTT
* * *
34860446 AAATTTAAAGTAAATTTAAATAAATAAATTT
1 AAATTTAAAATAAATTTAAAT--CTAAA-TA
*
34860477 AAATTTAAGATAAATTTAAATCTAAATA
1 AAATTTAAAATAAATTTAAATCTAAATA
*
34860505 AAATTTAAAATTAATTTAAA
1 AAATTTAAAATAAATTTAAA
34860525 CTTAAAAATC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 19 0.45
29 4 0.10
31 19 0.45
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (28 bp):
AAATTTAAAATAAATTTAAATCTAAATA
Found at i:34860839 original size:12 final size:12
Alignment explanation
Indices: 34860822--34860848 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
34860812 ATAAAAGAGA
34860822 AAAAATTAAATT
1 AAAAATTAAATT
34860834 AAAAATTAAATT
1 AAAAATTAAATT
34860846 AAA
1 AAA
34860849 CAAATCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAAATTAAATT
Found at i:34861866 original size:8 final size:8
Alignment explanation
Indices: 34861849--34861882 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
34861839 AACTACACTC
34861849 TTTTTC-T
1 TTTTTCTT
34861856 TTTTTCTT
1 TTTTTCTT
34861864 TTTTTCTT
1 TTTTTCTT
34861872 TTTTT-TT
1 TTTTTCTT
34861879 TTTT
1 TTTT
34861883 CTATTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 12 0.46
8 14 0.54
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (8 bp):
TTTTTCTT
Found at i:34861867 original size:15 final size:14
Alignment explanation
Indices: 34861849--34861889 Score: 64
Period size: 15 Copynumber: 2.8 Consensus size: 14
34861839 AACTACACTC
34861849 TTTTTCTTTTTTCTT
1 TTTTTCTTTTTT-TT
34861864 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
34861878 TTTTTCTATTTT
1 TTTTTCT-TTTT
34861890 GATATCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTTTTTT
Found at i:34861889 original size:8 final size:7
Alignment explanation
Indices: 34861849--34861889 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
34861839 AACTACACTC
34861849 TTTTTCT
1 TTTTTCT
34861856 TTTTTCTT
1 TTTTTC-T
34861864 TTTTTCT
1 TTTTTCT
*
34861871 TTTTTTT
1 TTTTTCT
34861878 TTTTTCT
1 TTTTTCT
*
34861885 ATTTT
1 TTTTT
34861890 GATATCTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:34862498 original size:9 final size:9
Alignment explanation
Indices: 34862484--34862513 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
34862474 CTATATGAAA
34862484 ATTAAATAT
1 ATTAAATAT
34862493 ATTAAATAT
1 ATTAAATAT
34862502 ATTAAAATAT
1 ATT-AAATAT
34862512 AT
1 AT
34862514 ATTATGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATTAAATAT
Found at i:34862515 original size:21 final size:21
Alignment explanation
Indices: 34862489--34862534 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
34862479 TGAAAATTAA
34862489 ATATATTA-AATATATTAAAAT
1 ATATATTATAA-ATATTAAAAT
*
34862510 ATATATTATGAATATTAAAAT
1 ATATATTATAAATATTAAAAT
34862531 ATAT
1 ATAT
34862535 TAAGTTGCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATATTATAAATATTAAAAT
Found at i:34867413 original size:16 final size:16
Alignment explanation
Indices: 34867392--34867424 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34867382 CAGTTGAAGT
*
34867392 AGTTAGTTTGTTTAGA
1 AGTTAGTCTGTTTAGA
34867408 AGTTAGTCTGTTTAGA
1 AGTTAGTCTGTTTAGA
34867424 A
1 A
34867425 ATTTTTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.03, G:0.24, T:0.45
Consensus pattern (16 bp):
AGTTAGTCTGTTTAGA
Found at i:34868194 original size:10 final size:10
Alignment explanation
Indices: 34868179--34868205 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
34868169 ATTATTTTTC
34868179 TTTTTTAAAT
1 TTTTTTAAAT
34868189 TTTTTTAAAT
1 TTTTTTAAAT
34868199 TTTTTTA
1 TTTTTTA
34868206 TTATAGGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:34870436 original size:62 final size:61
Alignment explanation
Indices: 34870370--34870651 Score: 215
Period size: 59 Copynumber: 4.6 Consensus size: 61
34870360 AGAGAAATGA
* *
34870370 GAGGTTGTCGACTATTGCATGGCCAACACAAAAAAAATTAATTTTTTTA-CGAGATAAAAAAG
1 GAGG-TGTCGACCATTGCATGGCCAACACAAAAAAAATTAATTTTTTTATC-AGACAAAAAAG
* * *
34870432 GAGGTGT-AAGCCATAGCATGGCCAACACAAAAAAAAATTTGAA-TTTTTTATCTA-ACAAAAAG
1 GAGGTGTCGA-CCATTGCATGGCCAACAC-AAAAAAAA-TT-AATTTTTTTATC-AGACAAAAAA
34870494 G
61 G
* * ** * * *
34870495 GA-GTGTCGACCATGGCATGACCAACACTCAAAAATTTGA-TTTTTTATTCAGA-TAAAAAG
1 GAGGTGTCGACCATTGCATGGCCAACACAAAAAAAATTAATTTTTTTA-TCAGACAAAAAAG
* * *
34870554 G-GGTGTCGGCCA-TGCGATGGCCAACACAAAAAAATTTGATTTTTTTATCAGACAAAAAAG
1 GAGGTGTCGACCATTGC-ATGGCCAACACAAAAAAAATTAATTTTTTTATCAGACAAAAAAG
* ** * * *
34870614 G-GATGTCGGTCATGGCCTGACCAACATCAAAAAAAATT
1 GAGGTGTCGACCATTGCATGGCCAACA-CAAAAAAAATT
34870652 GTCAGATAAA
Statistics
Matches: 179, Mismatches: 27, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
58 2 0.01
59 49 0.27
60 37 0.21
61 36 0.20
62 32 0.18
63 19 0.11
64 4 0.02
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (61 bp):
GAGGTGTCGACCATTGCATGGCCAACACAAAAAAAATTAATTTTTTTATCAGACAAAAAAG
Found at i:34870628 original size:119 final size:122
Alignment explanation
Indices: 34870375--34870647 Score: 319
Period size: 119 Copynumber: 2.3 Consensus size: 122
34870365 AATGAGAGGT
* * * **
34870375 TGTCGACTATTGCATGGCCAACACAAAAAAAATTAATTTTTTTACGAGATAAAAAAGGAGGTGTA
1 TGTCGACCATGGCATGACCAACACTCAAAAAATTAATTTTTTTACGAGATAAAAAAGGAGGTGTA
34870440 AGCCATAGCATGGCCAACACAAAAAAAAATTTGAATTTTTTATCTAACAAAAAGGGAG
66 AGCCATAGCATGGCCAACAC-AAAAAAAATTTGAATTTTTTATCTAACAAAAAGGGAG
* * *
34870498 TGTCGACCATGGCATGACCAACACTCAAAAATTTGATTTTTTATTC-AGAT-AAAAAGG-GGTGT
1 TGTCGACCATGGCATGACCAACACTCAAAAAATTAATTTTTT-TACGAGATAAAAAAGGAGGTGT
** *
34870560 CGGCCAT-GCGATGGCCAACAC-AAAAAAATTTGATTTTTTTATC-AGACAAAAAAGGGA-
65 AAGCCATAGC-ATGGCCAACACAAAAAAAATTTGAATTTTTTATCTA-AC-AAAAAGGGAG
** *
34870617 TGTCGGTCATGGCCTGACCAACA-TCAAAAAA
1 TGTCGACCATGGCATGACCAACACTCAAAAAA
34870648 AATTGTCAGA
Statistics
Matches: 131, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
118 8 0.06
119 43 0.33
120 11 0.08
121 21 0.16
122 7 0.05
123 39 0.30
124 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (122 bp):
TGTCGACCATGGCATGACCAACACTCAAAAAATTAATTTTTTTACGAGATAAAAAAGGAGGTGTA
AGCCATAGCATGGCCAACACAAAAAAAATTTGAATTTTTTATCTAACAAAAAGGGAG
Done.