Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 23 of 125
Found at i:6937439 original size:22 final size:22
Alignment explanation
Indices: 6937414--6937456 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6937404 AGAATTTTAG
6937414 AATTTTATAAAAATAT-TTAATT
1 AATTTT-TAAAAATATATTAATT
*
6937436 AATTTTTAAAATTATATTAAT
1 AATTTTTAAAAATATATTAAT
6937457 GATAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATTTTTAAAAATATATTAATT
Found at i:6937583 original size:2 final size:2
Alignment explanation
Indices: 6937549--6937574 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6937539 TAAGAGCTTA
6937549 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6937575 TGAATATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6943757 original size:23 final size:24
Alignment explanation
Indices: 6943696--6943757 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
6943686 GTACCAAGTT
* *
6943696 ATAAAA-ATATGTTAAATTCAATT
1 ATAAAATATATATTAAATTCAATA
*
6943719 ATCAAAATGATATATTAAA-TCTATA
1 AT-AAAAT-ATATATTAAATTCAATA
6943744 ATAAAATATATATT
1 ATAAAATATATATT
6943758 TTTGATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 9 0.27
24 9 0.27
25 6 0.18
26 9 0.27
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (24 bp):
ATAAAATATATATTAAATTCAATA
Found at i:6950368 original size:23 final size:22
Alignment explanation
Indices: 6950321--6950364 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
6950311 ATAAAACTAT
* *
6950321 TAAATATTAAAATAATATAATA
1 TAAATATTAAAAAAATATAAAA
6950343 TAAATATTTAAAAAAAT-TAAAA
1 TAAATA-TTAAAAAAATATAAAA
6950365 ATAATATGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAATATTAAAAAAATATAAAA
Found at i:6960960 original size:23 final size:23
Alignment explanation
Indices: 6960891--6960953 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
6960881 TCGACCTAAC
*
6960891 CCGACCCGACTCGTTGACTTTGA
1 CCGATCCGACTCGTTGACTTTGA
6960914 CCGATCCGAC-CTGTTGACTTTGA
1 CCGATCCGACTC-GTTGACTTTGA
*
6960937 CCGGT-CGACTCGTTGAC
1 CCGATCCGACTCGTTGAC
6960954 CATTGACTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
22 11 0.31
23 25 0.69
ACGTcount: A:0.16, C:0.33, G:0.24, T:0.27
Consensus pattern (23 bp):
CCGATCCGACTCGTTGACTTTGA
Found at i:6960970 original size:19 final size:19
Alignment explanation
Indices: 6960946--6960985 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
6960936 ACCGGTCGAC
*
6960946 TCGTTGACCATTGACTTTT
1 TCGTTGACCATTGAATTTT
6960965 TCGTTGACCATTGAATTTT
1 TCGTTGACCATTGAATTTT
6960984 TC
1 TC
6960986 TGGGAAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (19 bp):
TCGTTGACCATTGAATTTT
Found at i:6964908 original size:52 final size:52
Alignment explanation
Indices: 6964822--6965164 Score: 406
Period size: 52 Copynumber: 6.6 Consensus size: 52
6964812 TAAATGTAAA
* * * **
6964822 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCCTTACGGAATATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
* * *
6964874 AGGTACGTTGACTATGTGTCATCGTGACTATATGAATCCATTACGGATTAAC
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
* * * *
6964926 AGGTCCGATGATTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTAC
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCC-ATTACGGATTAAC
6964979 TA-GTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
1 -AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
* * * *
6965031 AGGTCCGATGACTATGTGTCATCATGAGTATACGAATCCTACTACGGATTTAC
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCC-ATTACGGATTAAC
* * * *
6965084 TA-GTTCGATGATTATGTGTCATCGTGAGTACAT-AGATCCTACTACGGATTAA-
1 -AGGTCCGATGACTATGTGTCATCGTGAGTATATGA-ATCC-ATTACGGATTAAC
* *
6965136 AGGTCCGATGACTTTGTATCATCGTGAGT
1 AGGTCCGATGACTATGTGTCATCGTGAGT
6965165 TATCAAAGGC
Statistics
Matches: 252, Mismatches: 32, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
51 2 0.01
52 149 0.59
53 99 0.39
54 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
Found at i:6965013 original size:105 final size:105
Alignment explanation
Indices: 6964822--6965164 Score: 473
Period size: 105 Copynumber: 3.3 Consensus size: 105
6964812 TAAATGTAAA
* * * *
6964822 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCC--CTTACGGA-ATA-TGAGGTACGTT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATACGAATCCTAC-TACGGATTTACT-A-GTACGAT
*
6964883 GACTATGTGTCATCGTGACTATATGAATCCATTACGGATTAAC
63 GACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
* *
6964926 AGGTCCGATGATTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTCCGATGAC
1 AGGTCCGATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTACGATGAC
6964991 TATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
66 TATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
* * *
6965031 AGGTCCGATGACTATGTGTCATCATGAGTATACGAATCCTACTACGGATTTACTAGTTCGATGAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTACGATGAC
* *
6965096 TATGTGTCATCGTGAGTACAT-AGATCCTACTACGGATTAA-
66 TATGTGTCATCGTGAGTATATGA-ATCC-ATTACGGATTAAC
* *
6965136 AGGTCCGATGACTTTGTATCATCGTGAGT
1 AGGTCCGATGACTATGTGTCATCGTGAGT
6965165 TATCAAAGGC
Statistics
Matches: 217, Mismatches: 16, Indels: 11
0.89 0.07 0.05
Matches are distributed among these distances:
104 37 0.17
105 164 0.76
106 15 0.07
107 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (105 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTACGATGAC
TATGTGTCATCGTGAGTATATGAATCCATTACGGATTAAC
Found at i:6965142 original size:157 final size:157
Alignment explanation
Indices: 6964820--6965164 Score: 466
Period size: 157 Copynumber: 2.2 Consensus size: 157
6964810 CGTAAATGTA
* * ** *
6964820 AAAGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCCTTACGGAATATGAGGTACGTTGA
1 AAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGAATAACAGGTACGATGA
* * *
6964885 CTATGTGTCATCGTGACTATATGAATCCATTACGGATTAACAGGTCCGATGATTATGTGTCATCG
66 CTATGTGTCATCATGACTATACGAATCCACTACGGATTAACAGGTCCGATGATTATGTGTCATCG
6964950 TGAGTATACGAATCCTACTACGGATTT
131 TGAGTATACGAATCCTACTACGGATTT
* * *
6964977 ACTA-GTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTAACAGGTCCGATG
1 A-AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGAATAACAGGTACGATG
* * *
6965041 ACTATGTGTCATCATGAGTATACGAATCCTACTACGGATTTACTA-GTTCGATGATTATGTGTCA
65 ACTATGTGTCATCATGACTATACGAATCC-ACTACGGATTAAC-AGGTCCGATGATTATGTGTCA
6965105 TCGTGAGTACATA-G-ATCCTACTACGGA-TT
128 TCGTGAGT--ATACGAATCCTACTACGGATTT
* *
6965134 AAAGGTCCGATGACTTTGTATCATCGTGAGT
1 AAAGGTCCGATGACTATGTGTCATCGTGAGT
6965165 TATCAAAGGC
Statistics
Matches: 165, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
156 1 0.01
157 108 0.65
158 51 0.31
159 2 0.01
160 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (157 bp):
AAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGAATAACAGGTACGATGA
CTATGTGTCATCATGACTATACGAATCCACTACGGATTAACAGGTCCGATGATTATGTGTCATCG
TGAGTATACGAATCCTACTACGGATTT
Found at i:6977902 original size:52 final size:52
Alignment explanation
Indices: 6977823--6978113 Score: 257
Period size: 52 Copynumber: 5.6 Consensus size: 52
6977813 TAAATGTAAA
* * * *
6977823 AGGTCCGATGATTATGTTTCATTGTGAGTATATGAATCCT-TTACAGATTAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGATTAT
* * *
6977874 GAGGTCTGATGACTATGTGTCATCGTGAGTATATGGATCCTACTACGGATTTACT
1 -AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGA-TTA-T
* * * * * *
6977929 A-GTCCTATGACTATATGTCATCGTGGGTATATAAATCC-ATTATGGATTAAC
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGATT-AT
* * * * *
6977980 AGATCCAATGATTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGA-TTA-T
** * * * * *
6978034 A-GTTTGATGATTATGTGTCATTGTGAGTACATGGATCCTATTACGGATTAA
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGATTAT
* *
6978085 AGGTCCGATGACTCTATGTCATCGTGAGT
1 AGGTCCGATGACTATGTGTCATCGTGAGT
6978114 TATCAAAGGC
Statistics
Matches: 188, Mismatches: 42, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
51 4 0.02
52 96 0.51
53 80 0.43
54 7 0.04
55 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTATTACGGATTAT
Found at i:6978053 original size:105 final size:105
Alignment explanation
Indices: 6977882--6978113 Score: 288
Period size: 105 Copynumber: 2.2 Consensus size: 105
6977872 ATGAGGTCTG
* *
6977882 ATGACTATGTGTCATCGTGAGTATATGGATCCTACTACGGATTTACTAGTCCTATGACTATATGT
1 ATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTCCTATGACTATATGT
* * *
6977947 CATCGTGGGTATATAAATCC-ATTATGGATTAACAGATCCA
66 CATCGTGAGTACATAAATCCTATTACGGATTAA-AGATCCA
* * * *
6977987 ATGATTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGT-TTGATGATTATGTG
1 ATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTCCT-ATGACTATATG
* ** * *
6978051 TCATTGTGAGTACATGGATCCTATTACGGATTAAAGGTCCG
65 TCATCGTGAGTACATAAATCCTATTACGGATTAAAGATCCA
* *
6978092 ATGACTCTATGTCATCGTGAGT
1 ATGACTATGTGTCATCGTGAGT
6978114 TATCAAAGGC
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
104 1 0.01
105 96 0.89
106 11 0.10
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (105 bp):
ATGACTATGTGTCATCGTGAGTATACGAATCCTACTACGGATTTACTAGTCCTATGACTATATGT
CATCGTGAGTACATAAATCCTATTACGGATTAAAGATCCA
Found at i:6982010 original size:24 final size:24
Alignment explanation
Indices: 6981980--6982038 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
6981970 ACATATGAAA
6981980 TATCGGTAGTTCTATTTATAATAG
1 TATCGGTAGTTCTATTTATAATAG
6982004 TATCGGTAGTTCTATTTATAATAG
1 TATCGGTAGTTCTATTTATAATAG
6982028 TATCGGTAGTT
1 TATCGGTAGTT
6982039 TGAGTACTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (24 bp):
TATCGGTAGTTCTATTTATAATAG
Found at i:6990003 original size:56 final size:57
Alignment explanation
Indices: 6989907--6990046 Score: 203
Period size: 56 Copynumber: 2.5 Consensus size: 57
6989897 AGTTACCGAA
* * *
6989907 ATGTGGAAGCCTTTGTGGTTGTTAT-TGATATGTGAGCCTTTGTGGTTGTTCTTTAAT
1 ATGT-GAAGCCTTTGTGGTTGTTCTCTGATATGTGAGCCTTTGTGGCTATTCTTTAAT
**
6989964 ATGTG-AGCCTTTGTGGTTGTTCTCTGATATGTGAGCCTTTGTGGCTATTCTTTGGT
1 ATGTGAAGCCTTTGTGGTTGTTCTCTGATATGTGAGCCTTTGTGGCTATTCTTTAAT
6990020 ATGTGAAAGCCTTTGTGGTTGTTCTCT
1 ATGTG-AAGCCTTTGTGGTTGTTCTCT
6990047 ATTATATGTG
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
55 17 0.23
56 34 0.45
57 4 0.05
58 20 0.27
ACGTcount: A:0.14, C:0.12, G:0.28, T:0.46
Consensus pattern (57 bp):
ATGTGAAGCCTTTGTGGTTGTTCTCTGATATGTGAGCCTTTGTGGCTATTCTTTAAT
Found at i:6990033 original size:30 final size:28
Alignment explanation
Indices: 6989914--6990058 Score: 184
Period size: 28 Copynumber: 5.1 Consensus size: 28
6989904 GAAATGTGGA
*
6989914 AGCCTTTGTGGTTGTT-ATTGATATGTG
1 AGCCTTTGTGGTTGTTCTTTGATATGTG
*
6989941 AGCCTTTGTGGTTGTTCTTTAATATGTG
1 AGCCTTTGTGGTTGTTCTTTGATATGTG
*
6989969 AGCCTTTGTGGTTGTTCTCTGATATGTG
1 AGCCTTTGTGGTTGTTCTTTGATATGTG
* * *
6989997 AGCCTTTGTGGCTATTCTTTGGTATGTG
1 AGCCTTTGTGGTTGTTCTTTGATATGTG
*
6990025 AAAGCCTTTGTGGTTGTTCTCTATTATATGTG
1 --AGCCTTTGTGGTTGTTCT-T-TGATATGTG
6990057 AG
1 AG
6990059 TACTAGTGGC
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
27 16 0.16
28 59 0.58
30 18 0.18
31 1 0.01
32 7 0.07
ACGTcount: A:0.14, C:0.12, G:0.27, T:0.47
Consensus pattern (28 bp):
AGCCTTTGTGGTTGTTCTTTGATATGTG
Found at i:6990270 original size:30 final size:29
Alignment explanation
Indices: 6990228--6990307 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
6990218 AATGTGCTTG
6990228 GACACCTTTGTGGCTATCTAATGATGTCTA
1 GACACC-TTGTGGCTATCTAATGATGTCTA
* * * * *
6990258 GACGCCTCTGTGGTTATCTAATGTTGTGTG
1 GACACCT-TGTGGCTATCTAATGATGTCTA
6990288 GACACCTTCGTGGCTATCTA
1 GACACCTT-GTGGCTATCTA
6990308 TCATCTGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.95
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (29 bp):
GACACCTTGTGGCTATCTAATGATGTCTA
Found at i:6995217 original size:80 final size:80
Alignment explanation
Indices: 6994901--6995288 Score: 478
Period size: 80 Copynumber: 4.8 Consensus size: 80
6994891 TTTGATGAAT
*
6994901 ATATGTTGTCGGTTTAACCGATTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGG
1 ATAT-TTGTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGG
6994966 TGCTAAGATTT-AACGG
65 TGCTAAGATTTGAA-GG
* * * ** * *
6994982 ATATATGTCGATTTAACCGATTAGAGCTGGGCTCACATTTGTTGTTTATCCGCTAAGCATTGGAT
1 ATATTTGTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGGT
*
6995047 GCTAAGATTTGATGG
66 GCTAAGATTTGAAGG
* * * * * *
6995062 ATACTTGTCAGTTTAATCGACTAGAGCTGGGCTCACATTTGCGGTTTATTCGTTATGCACTGGGT
1 ATATTTGTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGGT
6995127 GCTAAGATTTGAAGG
66 GCTAAGATTTGAAGG
* *
6995142 ATATTTTTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGAACTGGGT
1 ATATTTGTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGGT
* *
6995207 GCTAAGATTTGACGA
66 GCTAAGATTTGAAGG
* * * * * *
6995222 ATTTTTGTTGG-TTAATCCAACTAGAGCTGGGTTCAC-TTTCGCGG-TTATTCCGCTAGGCATTG
1 ATATTTGTCGGTTTAA-CCGACTAGAGCTGGGCTCACATTT-GCGGTTTA-TCCGCTAAGCACTG
6995284 GGTGC
63 GGTGC
6995289 CATAATTGTC
Statistics
Matches: 264, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
79 10 0.04
80 249 0.94
81 5 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (80 bp):
ATATTTGTCGGTTTAACCGACTAGAGCTGGGCTCACATTTGCGGTTTATCCGCTAAGCACTGGGT
GCTAAGATTTGAAGG
Found at i:6997560 original size:23 final size:24
Alignment explanation
Indices: 6997534--6997585 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
6997524 TTGTAATATA
* * *
6997534 ATAATATATAAATA-TTTAATAAT
1 ATAAAATACAAATATTTTAAAAAT
*
6997557 ATAAAATACGAATATTTTAAAAAT
1 ATAAAATACAAATATTTTAAAAAT
6997581 ATAAA
1 ATAAA
6997586 TTAATCTACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAAAATACAAATATTTTAAAAAT
Found at i:6997915 original size:2 final size:2
Alignment explanation
Indices: 6997908--6997939 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6997898 CCTTCCCCTC
6997908 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6997940 TCATCCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7003704 original size:18 final size:18
Alignment explanation
Indices: 7003673--7003717 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7003663 TATGTTTTCA
*
7003673 AATAATA-TATTAATTAAT
1 AATAATATTA-TAATAAAT
*
7003691 AATATTATTATAATAAAT
1 AATAATATTATAATAAAT
7003709 AATAATATT
1 AATAATATT
7003718 TTATTAGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATAATATTATAATAAAT
Found at i:7008001 original size:19 final size:19
Alignment explanation
Indices: 7007974--7008021 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
7007964 CGGTTTCAAT
*
7007974 TAAAT-AAATCATTAAAAA
1 TAAATAAAATCATAAAAAA
** *
7007992 TTCATAAAATAATAAAAAA
1 TAAATAAAATCATAAAAAA
7008011 TAAATAAAATC
1 TAAATAAAATC
7008022 CGTTCAACAA
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAATAAAATCATAAAAAA
Found at i:7012651 original size:313 final size:312
Alignment explanation
Indices: 7012084--7012691 Score: 928
Period size: 313 Copynumber: 1.9 Consensus size: 312
7012074 TATCTCCCAA
* * * *
7012084 TTTTGCCTCTCGTAAATTTTTATCTCTCGATTCTGTTAAGATTCCGATGAGTTTATAGAGATAAA
1 TTTTGCCTCTCGTAAAGTTTTATCTCCCGATTCTGTTAAGACTCCGATGAGTTTATAGAGACAAA
* *
7012149 ATATTTTGGGTGAAACCACCACAGTTTTAAAAGTTTGTGTATGACCCGACTCGACTACCCATAAG
66 ATATTTTAGGTGAAACCAACACAGTTTTAAAAGTTTGTGTATGACCCGACTCGACTACCCATAAG
* * * ** * * *
7012214 TTATATGCGAGAAGTCATTAAGTCGAGTTTAACCATGTCCGATTTTTTGAGTTTTACATGAATCC
131 ATATATGCGAGAAATCATCAAGTCGAGCCTAACCATGCCCGATTTTTCGAGTTTTACACGAATCC
* ** * * *
7012279 ATCTATTTAGTCATTTAAAGTTTTGATCTTATCGGAGCAAACACTTTTATGATCCCATCGGAACA
196 ATCCATTTAACCATTTAAAGTTATGATCGTATCGGAGCAAACACCTTTATGATCCCATCGGAACA
* *
7012344 AAGTAAAAAGATAAAACCTTGATCGGAAACGGGTTGTGATACAAAGTTCACT
261 AAGTAAAAAGATAAAACCTCGATCGAAAACGGGTTGTGATACAAAGTTCACT
* *
7012396 TTTTGCCTCTCGTAAGGTTTTATCTCCCGATTCTGTTAAGGCTCCGATGAGTTTATAGAGACAAA
1 TTTTGCCTCTCGTAAAGTTTTATCTCCCGATTCTGTTAAGACTCCGATGAGTTTATAGAGACAAA
** * *
7012461 ATATTTTAGGTGAAACCAAGGCAGTTTTAAAAGTTTGTGTATGGCCCGGACTCGACTACCCGTAA
66 ATATTTTAGGTGAAACCAACACAGTTTTAAAAGTTTGTGTATGACCC-GACTCGACTACCCATAA
*
7012526 GATATATGCGATAAATCATCAAGTCGAGCCTAACCATGCCCGATTTTTCGAGTTTTACACGAATC
130 GATATATGCGAGAAATCATCAAGTCGAGCCTAACCATGCCCGATTTTTCGAGTTTTACACGAATC
*
7012591 CGTCCATTTAACCATTTAAAGTTATGATCGTATCGGAGCAAACACCTTTATGATCCCATCGGAAC
195 CATCCATTTAACCATTTAAAGTTATGATCGTATCGGAGCAAACACCTTTATGATCCCATCGGAAC
*
7012656 AAAGTAAAGAGATAAAACCTCGATCGAAAACGGGTT
260 AAAGTAAAAAGATAAAACCTCGATCGAAAACGGGTT
7012692 ATCGGCTCGG
Statistics
Matches: 264, Mismatches: 31, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
312 101 0.38
313 163 0.62
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (312 bp):
TTTTGCCTCTCGTAAAGTTTTATCTCCCGATTCTGTTAAGACTCCGATGAGTTTATAGAGACAAA
ATATTTTAGGTGAAACCAACACAGTTTTAAAAGTTTGTGTATGACCCGACTCGACTACCCATAAG
ATATATGCGAGAAATCATCAAGTCGAGCCTAACCATGCCCGATTTTTCGAGTTTTACACGAATCC
ATCCATTTAACCATTTAAAGTTATGATCGTATCGGAGCAAACACCTTTATGATCCCATCGGAACA
AAGTAAAAAGATAAAACCTCGATCGAAAACGGGTTGTGATACAAAGTTCACT
Found at i:7012965 original size:7 final size:7
Alignment explanation
Indices: 7012919--7012961 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
7012909 AGGAAAGATG
7012919 AGAGAGA
1 AGAGAGA
7012926 AGAGAGA
1 AGAGAGA
7012933 AGAGAGA
1 AGAGAGA
7012940 AGAGAGA
1 AGAGAGA
7012947 A-AGAG-
1 AGAGAGA
7012952 AGAG-GA
1 AGAGAGA
7012958 AGAG
1 AGAG
7012962 GGAAAGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
5 2 0.06
6 10 0.29
7 22 0.65
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (7 bp):
AGAGAGA
Found at i:7014181 original size:319 final size:307
Alignment explanation
Indices: 7013544--7014204 Score: 1000
Period size: 319 Copynumber: 2.1 Consensus size: 307
7013534 ACCACATTGT
7013544 TTTTTATTTTTCCTAACATGTCAAATCCATATTGCTTCTACAATAGGTATAAATGTGTTTGAAAT
1 TTTTTATTTTTCCTAACATGTCAAATCCATATTGCTTCTACAATAGGTATAAATGTGTTTGAAAT
*
7013609 TCGATAACAAATTTTAATATGTTCTACATCAAAACCAAATACCTAATACCCAAATTAGCATCAGA
66 TCGATAACAAATTTTAATATGTTCTACATCAAAACCAAATACCTAATACCCAAATTAGCATCAAA
* * * * * *
7013674 TTGATGAAGGACCTAATTAGTATTTCGGGATTCAATAAACACACTTTGAAATTGAACCAATTTAG
131 TTGATGAAGGACCTAATTACTACTTCGGGACTCAATAAAAACACTTTGAAAATGAACCAATTTAA
7013739 AATTTGAACCCGATATTCAATGAAATTAACCCACATATATAGATATATATATATACATATGTTAA
196 AATTTGAACCCGATATTCAATGAAATTAACCCAC----------A-ATATATATACATATGTTAA
* *
7013804 TGTATTAGAGAATCACATCATCGTTAGTGTAATATTAACAAATTCACATTGTTTTTTA
250 TGTATTAGAGAATCACATCATCATTACTGTAATATTAACAAATTCACATTGTTTTTTA
7013862 TTTTTATTTTTTCCTAACATGTCAAATCCATATTGCTTCTACAATAGGTATAAATGTGTTTGAAA
1 TTTTTA-TTTTTCCTAACATGTCAAATCCATATTGCTTCTACAATAGGTATAAATGTGTTTGAAA
* * * *
7013927 TTCGATAACAAATTTTAATGTGTTCTACATCAAAATCAAATATCTAATACCCAAATTAGCATTAA
65 TTCGATAACAAATTTTAATATGTTCTACATCAAAACCAAATACCTAATACCCAAATTAGCATCAA
*
7013992 ATTGATGAAGGACCTAATTACTACTTCGGGACTCAATAAAAACACTTTGAAAATGAACTAATTTA
130 ATTGATGAAGGACCTAATTACTACTTCGGGACTCAATAAAAACACTTTGAAAATGAACCAATTTA
7014057 AAATTTGAACCCGATATTCAATGAAATTAACCCAC-ATATATATACATATGTTAATGTATTAGAG
195 AAATTTGAACCCGATATTCAATGAAATTAACCCACAATATATATACATATGTTAATGTATTAGAG
* *
7014121 AATTACATCGTCATTACTGTAATATTAACTAAACTTGATCCACATTGTTTTTTA
260 AATCACATCATCATTACTGTAATATTAAC-AAA--T--T-CACATTGTTTTTTA
7014175 TTTTTATTTTTTCCTAACATGTCAAATCCA
1 TTTTTA-TTTTTCCTAACATGTCAAATCCA
7014205 AGTTCGATAA
Statistics
Matches: 320, Mismatches: 16, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
307 54 0.17
308 3 0.01
310 1 0.00
312 1 0.00
313 44 0.14
318 6 0.02
319 211 0.66
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (307 bp):
TTTTTATTTTTCCTAACATGTCAAATCCATATTGCTTCTACAATAGGTATAAATGTGTTTGAAAT
TCGATAACAAATTTTAATATGTTCTACATCAAAACCAAATACCTAATACCCAAATTAGCATCAAA
TTGATGAAGGACCTAATTACTACTTCGGGACTCAATAAAAACACTTTGAAAATGAACCAATTTAA
AATTTGAACCCGATATTCAATGAAATTAACCCACAATATATATACATATGTTAATGTATTAGAGA
ATCACATCATCATTACTGTAATATTAACAAATTCACATTGTTTTTTA
Found at i:7017709 original size:21 final size:22
Alignment explanation
Indices: 7017684--7017724 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7017674 TTTAATTTAA
*
7017684 TTTTAATTTTTTTA-AAAATAC
1 TTTTAATTATTTTATAAAATAC
7017705 TTTTAATTATTTTATAAAAT
1 TTTTAATTATTTTATAAAAT
7017725 TTAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTAATTATTTTATAAAATAC
Found at i:7017803 original size:9 final size:9
Alignment explanation
Indices: 7017783--7017811 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7017773 CTAGATATAT
7017783 AAATTTTT-
1 AAATTTTTA
7017791 AAATTTTTA
1 AAATTTTTA
7017800 AAATTTTTA
1 AAATTTTTA
7017809 AAA
1 AAA
7017812 AAATCTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AAATTTTTA
Found at i:7020791 original size:31 final size:31
Alignment explanation
Indices: 7020634--7020801 Score: 114
Period size: 31 Copynumber: 5.5 Consensus size: 31
7020624 TTAATATAAT
7020634 ATTTGGTACCTGAACTTGATAATTTTTT-CTA
1 ATTTGGTACCTGAACTTGAT-ATTTTTTCCTA
* * * ** *
7020665 ATTTGATACATAAACTT--T-TTTTGACCCA
1 ATTTGGTACCTGAACTTGATATTTTTTCCTA
* *
7020693 ATTTGGTATCTGAACTTGA-CTTTTTTCCTA
1 ATTTGGTACCTGAACTTGATATTTTTTCCTA
* * * * * ** *
7020723 ATTTTGTACCTAAAATT-TTGTTTTGGACCCA
1 ATTTGGTACCTGAACTTGATATTTT-TTCCTA
*
7020754 ATTTGGTACTTGAACTTGATATTTTTTCCTA
1 ATTTGGTACCTGAACTTGATATTTTTTCCTA
*
7020785 ATTTGGTACCTAAACTT
1 ATTTGGTACCTGAACTT
7020802 TTTTTTAGAT
Statistics
Matches: 97, Mismatches: 33, Indels: 14
0.67 0.23 0.10
Matches are distributed among these distances:
27 4 0.04
28 15 0.15
29 1 0.01
30 24 0.25
31 48 0.49
32 5 0.05
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTTGGTACCTGAACTTGATATTTTTTCCTA
Found at i:7020825 original size:61 final size:60
Alignment explanation
Indices: 7020634--7020825 Score: 239
Period size: 61 Copynumber: 3.2 Consensus size: 60
7020624 TTAATATAAT
* * *
7020634 ATTTGGTACCTGAACTTGATAATTTTTT-CTAATTTGATACATAAAC-TTTTTTTGACCCA
1 ATTTGGTACTTGAACTTGAT-ATTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACCCA
* * *
7020693 ATTTGGTA-TCTGAACTTGA-CTTTTTTCCTAATTTTGTACCTAAAATTTTGTTTTGGACCCA
1 ATTTGGTACT-TGAACTTGATATTTTTTCCTAATTTGGTACCTAAACTTTT-TTTT-GACCCA
**
7020754 ATTTGGTACTTGAACTTGATATTTTTTCCTAATTTGGTACCTAAACTTTTTTTTAGATTCA
1 ATTTGGTACTTGAACTTGATATTTTTTCCTAATTTGGTACCTAAACTTTTTTTT-GACCCA
7020815 ATTTGGTACTT
1 ATTTGGTACTT
7020826 AAATTTATTA
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
57 6 0.05
58 14 0.12
59 20 0.18
60 4 0.04
61 42 0.37
62 28 0.25
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (60 bp):
ATTTGGTACTTGAACTTGATATTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACCCA
Found at i:7021064 original size:32 final size:31
Alignment explanation
Indices: 7021026--7021103 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
7021016 GAACCCCAAA
7021026 AAGTTTAAGTACCAACTTAAAAAAAAAGTGTC
1 AAGTTTAAGTACCAACTT-AAAAAAAAGTGTC
* ** *
7021058 AAGTTTAGGTACCAACTTAGGAAAAAGTTTC
1 AAGTTTAAGTACCAACTTAAAAAAAAGTGTC
*
7021089 AAGTTTGAGTACCAA
1 AAGTTTAAGTACCAA
7021104 ATTTGACCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 23 0.57
32 17 0.43
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.27
Consensus pattern (31 bp):
AAGTTTAAGTACCAACTTAAAAAAAAGTGTC
Found at i:7023246 original size:25 final size:25
Alignment explanation
Indices: 7023201--7023266 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
7023191 GGGATAGAGT
* *
7023201 TGCTCACAT-AGGTTGTGAATATAAA
1 TGCTCACATGA-GCTGTAAATATAAA
7023226 TGCTCACATGAGCTGTAAATATAAA
1 TGCTCACATGAGCTGTAAATATAAA
*
7023251 TGCTCACACGAGCTGT
1 TGCTCACATGAGCTGT
7023267 GGCTCAAGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (25 bp):
TGCTCACATGAGCTGTAAATATAAA
Found at i:7029455 original size:31 final size:29
Alignment explanation
Indices: 7029392--7029455 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
7029382 AAGTTTGTGT
* * * *
7029392 TTTGGTCACTGATGTTTTAATTATTACAA
1 TTTGGTCACTAACGTTTCAATTATAACAA
7029421 TTTGGTCACTAACGTTCTCAATTGATAACAA
1 TTTGGTCACTAACGTT-TCAATT-ATAACAA
7029452 TTTG
1 TTTG
7029456 ATTACTTGTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.48
30 5 0.17
31 10 0.34
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (29 bp):
TTTGGTCACTAACGTTTCAATTATAACAA
Found at i:7039461 original size:225 final size:225
Alignment explanation
Indices: 7039070--7039513 Score: 861
Period size: 225 Copynumber: 2.0 Consensus size: 225
7039060 TTCACACTAA
7039070 GATAACATCTCAGGTTCCTGAATAATCTCTACCCTTGTCATACAAATAAAAGAAAAGGGTTTCTG
1 GATAACATCTCAGGTTCCTGAATAATCTCTACCCTTGTCATACAAATAAAAGAAAAGGGTTTCTG
*
7039135 GTGGAACCTACTGTATAACATAAGGCTCAGCCGTTACGCAGTCAACAATACACTAATTAGGATTA
66 GTGGAACCTACTGTATAACATAAGGCTCAGCCATTACGCAGTCAACAATACACTAATTAGGATTA
7039200 CTTTGTAATGTTTGTTAAATAATATTATTAGCATAAAATGATTTTTCTTGTTCCCTAGTCCTTGC
131 CTTTGTAATGTTTGTTAAATAATATTATTAGCATAAAATGATTTTTCTTGTTCCCTAGTCCTTGC
7039265 TCTTCTCATCATTTCGTTCTTGTTCCCTAG
196 TCTTCTCATCATTTCGTTCTTGTTCCCTAG
*
7039295 GATAACATCTCAGGTTCCTGAATAATCTCTACCCTTGTCGTACAAATAAAAGAAAAGGGTTTCTG
1 GATAACATCTCAGGTTCCTGAATAATCTCTACCCTTGTCATACAAATAAAAGAAAAGGGTTTCTG
7039360 GTGGAACCTACTGTATAACATAAGGCTCAGCCATTACGCAGTCAACAATACACTAATTAGGATTA
66 GTGGAACCTACTGTATAACATAAGGCTCAGCCATTACGCAGTCAACAATACACTAATTAGGATTA
7039425 CTTTGTAATGTTTGTTAAATAATATTATTAGCATAAAATGATTTTTCTTGTTCCCTAGTCCTTGC
131 CTTTGTAATGTTTGTTAAATAATATTATTAGCATAAAATGATTTTTCTTGTTCCCTAGTCCTTGC
*
7039490 TCTTCTCATCATTTCGTTTTTGTT
196 TCTTCTCATCATTTCGTTCTTGTT
7039514 TGTCCTTTTT
Statistics
Matches: 216, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
225 216 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (225 bp):
GATAACATCTCAGGTTCCTGAATAATCTCTACCCTTGTCATACAAATAAAAGAAAAGGGTTTCTG
GTGGAACCTACTGTATAACATAAGGCTCAGCCATTACGCAGTCAACAATACACTAATTAGGATTA
CTTTGTAATGTTTGTTAAATAATATTATTAGCATAAAATGATTTTTCTTGTTCCCTAGTCCTTGC
TCTTCTCATCATTTCGTTCTTGTTCCCTAG
Found at i:7041145 original size:16 final size:17
Alignment explanation
Indices: 7041098--7041147 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
7041088 TCCATTTTAA
* *
7041098 AAATTTATTTTAAAGATT
1 AAATTTATTTTGAA-TTT
7041116 AAATTTATTTTGAATTT
1 AAATTTATTTTGAATTT
7041133 AAATTTA-TTTGAATT
1 AAATTTATTTTGAATT
7041148 CATATTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.27
17 9 0.30
18 13 0.43
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
AAATTTATTTTGAATTT
Found at i:7041154 original size:16 final size:17
Alignment explanation
Indices: 7041098--7041155 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 17
7041088 TCCATTTTAA
*
7041098 AAATTTATTTTAAAGATT-
1 AAATTTATTTT-GA-ATTC
*
7041116 AAATTTATTTTGAATTT
1 AAATTTATTTTGAATTC
7041133 AAATTTA-TTTGAATTC
1 AAATTTATTTTGAATTC
*
7041149 ATATTTA
1 AAATTTA
7041156 AATTTAAGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 17 0.47
17 8 0.22
18 11 0.31
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (17 bp):
AAATTTATTTTGAATTC
Found at i:7043127 original size:59 final size:60
Alignment explanation
Indices: 7043064--7043676 Score: 539
Period size: 59 Copynumber: 10.4 Consensus size: 60
7043054 CTTGAAACTT
7043064 CCAAAAATTACCATTTTACCCCCGAATC-TTCCAAAATCCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* * * * * * *
7043123 CCAAAATTTACCGTTATACCTCCGAA-CTTTCCAAAATCCCATTTTTGACCTCGAAACTT--
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACC-C-CAATTTCA
* *
7043182 CCAAAAATTACCATTTTACCCTCGAATC-TTCCAAAATCCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* * ** * * * * *
7043241 CCAAAAATTACTATTTT-GCCCTTAAACTTTCTAAAATCCCATTTTTGACCTCAAAACTT--
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACC-C-CAATTTCA
* * * * * * * * *
7043300 CCAAAAAATATCGTTTTA-CCCCTAAACTTTTCAAAATTCCA-TTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* * * *
7043358 CC-CAAATTACCATTTTACCCCC-AAACTTTCCAAAATCCCATTTTTAACCTCTATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* *
7043416 CCAAAAATTACCATTTTACCCCCGAA-CTTTCCAAAATCCAATTTTTAACCCCAATTTAA
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* * * * * * *
7043475 CCAAAACTTACCCTTTTACCCCCG-ACCCTTCCAAAATTCCATTTTTGACCCCAAAACTT--
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCC--AATTTCA
** * * **
7043534 CCAAAAATTACCATTTTACTTCCGAATC-TTCCAAAATCCCATTTTTAACCCTAGTTTTG
1 CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
* * * * *
7043593 CCAAAAATTACCATTTTA-CCCC-TATACTTTCTAAAATTCTA-TTTTGACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAAT-CTTTCCAAAATCCCATTTTTAACCCCAATTTCA
*
7043651 CCAAAAATTA-CATTTTTACCCTCGAA
1 CCAAAAATTACCA-TTTTACCCCCGAA
7043677 AGGCAAAAAT
Statistics
Matches: 444, Mismatches: 83, Indels: 53
0.77 0.14 0.09
Matches are distributed among these distances:
56 3 0.01
57 38 0.09
58 67 0.15
59 317 0.71
60 8 0.02
61 11 0.02
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (60 bp):
CCAAAAATTACCATTTTACCCCCGAATCTTTCCAAAATCCCATTTTTAACCCCAATTTCA
Found at i:7043241 original size:118 final size:117
Alignment explanation
Indices: 7043024--7043629 Score: 682
Period size: 118 Copynumber: 5.2 Consensus size: 117
7043014 GCTCTCTAGT
* * * **
7043024 CCCCAAGCCTTCCAAAATTCCATTTTTGACCTTGAAACTTCCAAAAATTACCATTTTACCCCCGA
1 CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTTCCAAAAATTACCATTTTACCCCCGA
* *
7043089 ATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAATTTACCGTTATAC
66 ATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAA-TTACCATTTTAC
* * * *
7043142 CTCCGAACTTTCCAAAATCCCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGA
1 CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTTCCAAAAATTACCATTTTACCCCCGA
* * *
7043207 ATCTTCCAAAATCCCATTTTTAACCCCGATTTCACCAAAAATTACTATTTTGC
66 ATCTTCCAAAATCCCATTTTTAACCCCAATTTCACC-AAAATTACCATTTTAC
** * * * * *
7043260 CCTTAAACTTTCTAAAATCCCATTTTTGACCTCAAAACTTCCAAAAAATATCGTTTTA-CCCCTA
1 CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTTCCAAAAATTACCATTTTACCCCCGA
* * * * * *
7043324 AACTTTTCAAAATTCCA-TTTTAACCCCGATTTTACCCAAATTACCATTTTAC
66 ATC-TTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTAC
* * *
7043376 CCCCAAACTTTCCAAAATCCCATTTTTAACCTC--TATTTCACCAAAAATTACCATTTTACCCCC
1 CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTT--CCAAAAATTACCATTTTACCCCC
* * *
7043439 GAA-CTTTCCAAAATCCAATTTTTAACCCCAATTTAACCAAAACTTACCCTTTTAC
64 GAATC-TTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAA-TTACCATTTTAC
* * * * * **
7043494 CCCCGACCCTTCCAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACCATTTTACTTCCGA
1 CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTTCCAAAAATTACCATTTTACCCCCGA
* * **
7043559 ATCTTCCAAAATCCCATTTTTAACCCTAGTTTTGCCAAAAATTACCATTTTAC
66 ATCTTCCAAAATCCCATTTTTAACCCCAATTTCACC-AAAATTACCATTTTAC
* * *
7043612 CCCTATACTTTCTAAAAT
1 CCCCAAACTTTCCAAAAT
7043630 TCTATTTTGA
Statistics
Matches: 408, Mismatches: 69, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
114 3 0.01
116 69 0.17
117 50 0.12
118 274 0.67
119 9 0.02
120 3 0.01
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (117 bp):
CCCCAAACTTTCCAAAATCCCATTTTTGACCTCAAAACTTCCAAAAATTACCATTTTACCCCCGA
ATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTAC
Found at i:7043305 original size:29 final size:29
Alignment explanation
Indices: 7043032--7043305 Score: 106
Period size: 30 Copynumber: 9.3 Consensus size: 29
7043022 GTCCCCAAGC
* *
7043032 CTTCCAAAATTCCATTTTTGACCTTGAAA
1 CTTCCAAAATCCCATTTTTGACCTCGAAA
* * *
7043061 CTTCCAAAAATTACCA-TTTT-ACCCCCGAAT
1 CTTCC-AAAA-TCCCATTTTTGA-CCTCGAAA
* *
7043091 CTTCCAAAATCCCATTTTTAACC-C-CAA
1 CTTCCAAAATCCCATTTTTGACCTCGAAA
* * * *
7043118 TTTCACCAAAATTTACC-GTTAT-ACCTCCG-AA
1 CTT--CCAAAA--TCCCATTTTTGACCT-CGAAA
7043149 CTTTCCAAAATCCCATTTTTGACCTCGAAA
1 C-TTCCAAAATCCCATTTTTGACCTCGAAA
* *
7043179 CTTCCAAAAATTACCA-TTTT-ACCCTCGAAT
1 CTTCC-AAAA-TCCCATTTTTGA-CCTCGAAA
* *
7043209 CTTCCAAAATCCCATTTTTAACCCCG--A
1 CTTCCAAAATCCCATTTTTGACCTCGAAA
* ** * *
7043236 TTTCACCAAAAATTAC-TATTTTGCCCT-TAAA
1 CTT--CC-AAAATCCCAT-TTTTGACCTCGAAA
* *
7043267 CTTTCTAAAATCCCATTTTTGACCTCAAAA
1 C-TTCCAAAATCCCATTTTTGACCTCGAAA
7043297 CTTCCAAAA
1 CTTCCAAAA
7043306 AATATCGTTT
Statistics
Matches: 181, Mismatches: 34, Indels: 60
0.66 0.12 0.22
Matches are distributed among these distances:
27 5 0.03
28 12 0.07
29 71 0.39
30 74 0.41
31 15 0.08
32 4 0.02
ACGTcount: A:0.33, C:0.30, G:0.04, T:0.33
Consensus pattern (29 bp):
CTTCCAAAATCCCATTTTTGACCTCGAAA
Found at i:7043599 original size:293 final size:293
Alignment explanation
Indices: 7043064--7043671 Score: 696
Period size: 293 Copynumber: 2.1 Consensus size: 293
7043054 CTTGAAACTT
*
7043064 CCAAAAATTACCATTTTACCCCCGAATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCCAAATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAA
* * * * *
7043129 TTTACCGTTATACCTCCGAACTTTCCAAAATCCCATTTTTGACCTCGAAACTTCCAAAAATTACC
66 ATTACCATTATACCCCCGAACTTTCCAAAATCCAATTTTTAACCTCGAAACTTCCAAAAATTACC
* * * * * *
7043194 ATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCCCGATTTCACCAAAAATTACTATTTTG
131 ATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCCCAACTT-ACCAAAAATTACCATTTTA
* * * * *
7043259 CCCTTAAACTTTCTAAAATCCCATTTTTGACCTCAAAACTTCCAAAAAATATCGTTTTACCCCTA
195 CCCTGAAACTTTCCAAAATCCCATTTTTAACCTCAAAACTTCCAAAAAATACCATTTTACCCCTA
* *
7043324 AACTTT-TCAAAATTCCATTTTAACCCCGATTTTA
260 AACTTTCT-AAAATTCCATTTTAACCCCAATTTCA
* * *
7043358 CC-CAAATTACCATTTTACCCCCAAA-CTTTCCAAAATCCCATTTTTAACCTCTATTTCACCAAA
1 CCAAAAATTACCATTTTACCCCCAAATC-TTCCAAAATCCCATTTTTAACCCCAATTTCACCAAA
* * * *
7043421 AATTACCATTTTACCCCCGAACTTTCCAAAATCCAATTTTTAACC-C-CAATTTAACCAAAACTT
65 AATTACCATTATACCCCCGAACTTTCCAAAATCCAATTTTTAACCTCGAAACTT--CCAAAAATT
* * * *
7043484 ACCCTTTTACCCCCGACCCTTCCAAAATTCCATTTTTGACCCCAAAACTT-CCAAAAATTACCAT
128 ACCATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCCC--AACTTACCAAAAATTACCAT
* * *** *
7043548 TTTACTTCC-GAATC-TTCCAAAATCCCATTTTTAACC-CTAGTTTTGCCAAAAATTACCATTTT
191 TTTAC--CCTGAAACTTTCCAAAATCCCATTTTTAACCTCAAAACTT-CCAAAAAATACCATTTT
* * *
7043610 ACCCCTATACTTTCTAAAATTCTATTTTGACCCCAATTTCA
253 ACCCCTAAACTTTCTAAAATTCCATTTTAACCCCAATTTCA
7043651 CCAAAAATTA-CATTTTTACCC
1 CCAAAAATTACCA-TTTTACCC
7043672 TCGAAAGGCA
Statistics
Matches: 263, Mismatches: 40, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
291 4 0.02
292 6 0.02
293 228 0.87
294 20 0.08
295 5 0.02
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (293 bp):
CCAAAAATTACCATTTTACCCCCAAATCTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAA
ATTACCATTATACCCCCGAACTTTCCAAAATCCAATTTTTAACCTCGAAACTTCCAAAAATTACC
ATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCCCAACTTACCAAAAATTACCATTTTAC
CCTGAAACTTTCCAAAATCCCATTTTTAACCTCAAAACTTCCAAAAAATACCATTTTACCCCTAA
ACTTTCTAAAATTCCATTTTAACCCCAATTTCA
Found at i:7043616 original size:30 final size:29
Alignment explanation
Indices: 7043061--7043671 Score: 131
Period size: 29 Copynumber: 20.8 Consensus size: 29
7043051 GACCTTGAAA
*
7043061 CTTCCAAAAATTACCATTTTACCCCCGAAT
1 CTTCCAAAAATTACCATTTTA-CCCCTAAT
*
7043091 CTTCC-AAAA-TCCCATTTTTAACCCC-AAT
1 CTTCCAAAAATTACCA-TTTT-ACCCCTAAT
* * * *
7043119 -TTCACCAAAATTTACCGTTATACCTCCGAA-
1 CTT--CCAAAAATTACCATTTTACC-CCTAAT
* * * *
7043149 CTTTCC-AAAA-TCCCATTTTTGACCTCGAAA
1 C-TTCCAAAAATTACCA-TTTT-ACCCCTAAT
*
7043179 CTTCCAAAAATTACCATTTTACCCTCGAAT
1 CTTCCAAAAATTACCATTTTACCC-CTAAT
* *
7043209 CTTCC-AAAA-TCCCATTTTTAACCCC-GAT
1 CTTCCAAAAATTACCA-TTTT-ACCCCTAAT
* * * *
7043237 -TTCACCAAAAATTACTATTTTGCCCTTAAA
1 CTT--CCAAAAATTACCATTTTACCCCTAAT
* * * * * *
7043267 CTTTCTAAAA-TCCCATTTTTGACCTCAAAA
1 CTTCCAAAAATTACCA-TTTT-ACCCCTAAT
* * * *
7043297 CTTCCAAAAAATATCGTTTTACCCCTAAA
1 CTTCCAAAAATTACCATTTTACCCCTAAT
* *
7043326 CTTTTC-AAAATT-CCATTTTAACCCC-GAT
1 C-TTCCAAAAATTACCATTTT-ACCCCTAAT
* * * *
7043354 TTTACC-CAAATTACCATTTTACCCCCAAA
1 CTT-CCAAAAATTACCATTTTACCCCTAAT
* *
7043383 CTTTCC-AAAA-TCCCATTTTTAACCTCT-AT
1 C-TTCCAAAAATTACCA-TTTT-ACCCCTAAT
*
7043412 -TTCACCAAAAATTACCATTTTACCCCCGAA-
1 CTT--CCAAAAATTACCATTTTA-CCCCTAAT
7043442 CTTTCC-AAAA-T-CCAATTTTTAACCCC-AAT
1 C-TTCCAAAAATTACC-A-TTTT-ACCCCTAAT
* * * **
7043471 -TTAACCAAAACTTACCCTTTTACCCCCGACC
1 CTT--CCAAAAATTACCATTTTA-CCCCTAAT
* *
7043502 CTTCC-AAAATT-CCATTTTTGACCCCAAAA
1 CTTCCAAAAATTACCA-TTTT-ACCCCTAAT
* *
7043531 CTTCCAAAAATTACCATTTTACTTCCGAAT
1 CTTCCAAAAATTACCATTTTAC-CCCTAAT
* * *
7043561 CTTCC-AAAA-TCCCATTTTTAACCCTAGT
1 CTTCCAAAAATTACCA-TTTTACCCCTAAT
*
7043589 TTTGCCAAAAATTACCATTTTACCCCT-AT
1 CTT-CCAAAAATTACCATTTTACCCCTAAT
* * *
7043618 ACTTTCTAAAATT-CTATTTTGACCCC-AAT
1 -CTTCCAAAAATTACCATTTT-ACCCCTAAT
7043647 -TTCACCAAAAATTA-CATTTTTACCC
1 CTT--CCAAAAATTACCA-TTTTACCC
7043672 TCGAAAGGCA
Statistics
Matches: 426, Mismatches: 84, Indels: 143
0.65 0.13 0.22
Matches are distributed among these distances:
27 14 0.03
28 62 0.15
29 170 0.40
30 142 0.33
31 30 0.07
32 8 0.02
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (29 bp):
CTTCCAAAAATTACCATTTTACCCCTAAT
Found at i:7051351 original size:16 final size:16
Alignment explanation
Indices: 7051330--7051362 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7051320 CTCAACAGGT
7051330 CCTCAAATATCAATAA
1 CCTCAAATATCAATAA
7051346 CCTCAAATATCAATAA
1 CCTCAAATATCAATAA
7051362 C
1 C
7051363 ATGAGTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (16 bp):
CCTCAAATATCAATAA
Found at i:7056116 original size:200 final size:200
Alignment explanation
Indices: 7055683--7056314 Score: 858
Period size: 200 Copynumber: 3.1 Consensus size: 200
7055673 GGCGGTAATC
* * *
7055683 TTCCTGATGAGATACAGAGAAGAACACCAACTTAGCGCTCAACACGAGCAAATCTTCGAACCCAG
1 TTCCTGATGAGATACAGAGAAGAAGACCAACTCAGCGCTCAACACGAGCAAATCTTCGAACCCAA
*
7055748 CTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAAGGGTTAG-TTTTCTGATGAGAC
66 CTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAAT-AAAAA-GGTTAGCTTCT-TGATGAGAC
*
7055812 ACAGAGAAGTGGACCAAATTCGTCTTCCTT-AGGAGATCCAAAGAAGTGAATTAAAACAA-CAGA
128 ACAGAGAAGTGGACCAAATTCGTCTT-CTTGAGGAGATCCAAAGAAGCGAATTAAAACAAGC-GA
* *
7055875 GGCGGTCATC
191 GGCAGTCATT
* *
7055885 TTCTTGATGAGATACAGAGAAGAATACCAACTCAGCGCTCAACACGAGCAAATCTTCGAACCCAA
1 TTCCTGATGAGATACAGAGAAGAAGACCAACTCAGCGCTCAACACGAGCAAATCTTCGAACCCAA
* **** ** *
7055950 CTTCCTGATGAGACATTGAGAAATGGGTCGAAGCAATAAATTGGTTAGCTTCTTGATGAGATACA
66 CTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTAGCTTCTTGATGAGACACA
** * *
7056015 GAGAAGTGGACCAGGTTCGTCTTCTTGAGGAGATCCAGAGAAGCGAATCAAAACAAGCGAGGCAG
131 GAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCCAAAGAAGCGAATTAAAACAAGCGAGGCAG
7056080 TCATT
196 TCATT
* ** * *
7056085 TTCCTGATGAGATATAGAGAAGAAGACCAACTCAATGCTCAACGCGAGTAAATCTTCGAACCCAA
1 TTCCTGATGAGATACAGAGAAGAAGACCAACTCAGCGCTCAACACGAGCAAATCTTCGAACCCAA
* * * *
7056150 TTTCCTGATGAGATACTGAGAAGCAAGTTGAAGCAATAAAAAGGTTAGCTTCCTGATGAGACACA
66 CTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTAGCTTCTTGATGAGACACA
* * * *
7056215 GAGAAGTAGACCAAAATCGTCTTCTTGAGGAGATCCAAAGAAGCGAATTAAAAC-AGATGATTGC
131 GAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCCAAAGAAGCGAATTAAAACAAG-CGA-GGC
7056279 AGTCATT
194 AGTCATT
*
7056286 TTCCTGATGAGACACAGAGAAGAAGACCA
1 TTCCTGATGAGATACAGAGAAGAAGACCA
7056315 GATCAATGAA
Statistics
Matches: 376, Mismatches: 49, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
199 5 0.01
200 235 0.62
201 43 0.11
202 93 0.25
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (200 bp):
TTCCTGATGAGATACAGAGAAGAAGACCAACTCAGCGCTCAACACGAGCAAATCTTCGAACCCAA
CTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTAGCTTCTTGATGAGACACA
GAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCCAAAGAAGCGAATTAAAACAAGCGAGGCAG
TCATT
Found at i:7056669 original size:13 final size:13
Alignment explanation
Indices: 7056653--7056677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7056643 ATTTAAACCC
7056653 ATTTTAAAGATTT
1 ATTTTAAAGATTT
7056666 ATTTTAAAGATT
1 ATTTTAAAGATT
7056678 AAATTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTTAAAGATTT
Found at i:7058656 original size:30 final size:30
Alignment explanation
Indices: 7058593--7058999 Score: 149
Period size: 30 Copynumber: 13.8 Consensus size: 30
7058583 GTCCCCAAGC
* *
7058593 CTTCC-AAAATT-CCATTTTTGA-CCTTGAAA
1 CTTCCAAAAATTACCA-TTTT-ACCCTCGAAT
*
7058622 CTTCCAAAAATTACCATTTTACCCCCGAAT
1 CTTCCAAAAATTACCATTTTACCCTCGAAT
*
7058652 CTTCC-AAAA-TCCCATTTTTAACCC-C-AAT
1 CTTCCAAAAATTACCA-TTTT-ACCCTCGAAT
* * *
7058680 -TTCACCAAAATTTACCGTTATA-CCTCCGAA-
1 CTT--CCAAAAATTACCATTTTACCCT-CGAAT
* *
7058710 CTTTCC-AAAA-TCCCATTTTTGA-CCTCGAAA
1 C-TTCCAAAAATTACCA-TTTT-ACCCTCGAAT
7058740 CTTCCAAAAATTACCATTTTACCCTCGAAT
1 CTTCCAAAAATTACCATTTTACCCTCGAAT
* *
7058770 CTTCC-AAAA-TCCCATTTTTAACCTCG-AT
1 CTTCCAAAAATTACCA-TTTTACCCTCGAAT
* * *
7058798 -TTCACCAAAAATTATCATTTTACCCCCG-GT
1 CTT--CCAAAAATTACCATTTTACCCTCGAAT
7058828 CCTTCC-AAAATT-CCATTTTTGA-CCTCG-AT
1 -CTTCCAAAAATTACCA-TTTT-ACCCTCGAAT
7058857 -TTCACAAAAAATTACCATTTTACCCTCGAA-
1 CTTC-C-AAAAATTACCATTTTACCCTCGAAT
* *
7058887 CTTTCC-AAAA-TCCCATTTTTAACCTC-AAT
1 C-TTCCAAAAATTACCA-TTTTACCCTCGAAT
* * *
7058916 -TTCACCAAAAATTATCATTTTACCC-CTAACC
1 CTT--CCAAAAATTACCATTTTACCCTCGAA-T
* * *
7058947 CTTCTAAAAATT-CCATTTTTGACCCT-AAAA
1 CTTCCAAAAATTACCA-TTTT-ACCCTCGAAT
**
7058977 CTT-TTAAAATTACCATTTTACCC
1 CTTCCAAAAATTACCATTTTACCC
7059000 CTAAACTTTT
Statistics
Matches: 293, Mismatches: 35, Indels: 101
0.68 0.08 0.24
Matches are distributed among these distances:
27 9 0.03
28 31 0.11
29 94 0.32
30 121 0.41
31 29 0.10
32 9 0.03
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (30 bp):
CTTCCAAAAATTACCATTTTACCCTCGAAT
Found at i:7058688 original size:59 final size:59
Alignment explanation
Indices: 7058625--7059064 Score: 385
Period size: 59 Copynumber: 7.4 Consensus size: 59
7058615 CTTGAAACTT
*
7058625 CCAAAAATTACCATTTTACCCCCGAATCTTCCAAAATCCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATCTTCCAAAATCCCATTTTTGACCCCAATTTCA
* * * * * *
7058684 CCAAAATTTACCGTTATACCTCCGAA-CTTTCCAAAATCCCATTTTTGACCTCGAAACTT--
1 CCAAAAATTACCATTTTACCCCCGAATC-TTCCAAAATCCCATTTTTGACC-C-CAATTTCA
* * * *
7058743 CCAAAAATTACCATTTTACCCTCGAATCTTCCAAAATCCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATCTTCCAAAATCCCATTTTTGACCCCAATTTCA
* * * * *
7058802 CCAAAAATTATCATTTTACCCCCG-GTCCTTCCAAAATTCCATTTTTGACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAAT-CTTCCAAAATCCCATTTTTGACCCCAATTTCA
* * * *
7058861 CAAAAAATTACCATTTTACCCTCGAA-CTTTCCAAAATCCCATTTTTAACCTCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATC-TTCCAAAATCCCATTTTTGACCCCAATTTCA
* * * * * * ** *
7058920 CCAAAAATTATCATTTTA-CCCCTAACCCTTCTAAAAATTCCATTTTTGACCCTAA-AACT
1 CCAAAAATTACCATTTTACCCCCGAA-TCTTC-CAAAATCCCATTTTTGACCCCAATTTCA
*** * * * * *
7058979 TTTAAAATTACCATTTTA-CCCCTAAACTTTTCAAAATTCCATTTTTTGACTCCAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAATC-TTCCAAAATCCCA-TTTTTGACCCCAATTTCA
*
7059039 CCAAAAATTA-TATTTTTACCCCCGAA
1 CCAAAAATTACCA-TTTTACCCCCGAA
7059065 AGTTAAAAAT
Statistics
Matches: 306, Mismatches: 58, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
57 3 0.01
58 18 0.06
59 241 0.79
60 34 0.11
61 10 0.03
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCGAATCTTCCAAAATCCCATTTTTGACCCCAATTTCA
Found at i:7058802 original size:118 final size:117
Alignment explanation
Indices: 7058592--7059060 Score: 567
Period size: 118 Copynumber: 4.0 Consensus size: 117
7058582 AGTCCCCAAG
* *
7058592 CCTTCCAAAATTCCATTTTTGACCTTGAAACTTCCAAAAATTACCATTTTACCCCCGAATCTTCC
1 CCTTCCAAAATTCCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGAATCTTCC
* * * * *
7058657 AAAATCCCATTTTTAACCCCAATTTCACCAAAATTTACCGTTATACCTCCGAA
66 AAAATCCCATTTTTAACCTCAATTTCACCAAAAATTATCATTTTACC-CCGAA
* *
7058710 CTTTCCAAAATCCCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGAATCTTCC
1 CCTTCCAAAATTCCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGAATCTTCC
* **
7058775 AAAATCCCATTTTTAACCTCGATTTCACCAAAAATTATCATTTTACCCCCGGT
66 AAAATCCCATTTTTAACCTCAATTTCACCAAAAATTATCATTTTA-CCCCGAA
*
7058828 CCTTCCAAAATTCCATTTTTGACCTCG--ATTTCACAAAAAATTACCATTTTACCCTCGAA-CTT
1 CCTTCCAAAATTCCATTTTTGACCTCGAAACTTC-C-AAAAATTACCATTTTACCCTCGAATC-T
*
7058890 TCCAAAATCCCATTTTTAACCTCAATTTCACCAAAAATTATCATTTTACCCCTAA
63 TCCAAAATCCCATTTTTAACCTCAATTTCACCAAAAATTATCATTTTACCCCGAA
* * ** * *
7058945 CCCTTCTAAAAATTCCATTTTTGACC-CTAAAACTT-TTAAAATTACCATTTTACCC-CTAAACT
1 -CCTTC-CAAAATTCCATTTTTGACCTC-GAAACTTCCAAAAATTACCATTTTACCCTCGAATC-
* * *
7059007 TTTCAAAATTCCATTTTTTGA-CTCCAATTTCACCAAAAATTAT-ATTTTTACCCC
62 TTCCAAAATCCCA-TTTTTAACCT-CAATTTCACCAAAAATTATCA-TTTTACCCC
7059061 CGAAAGTTAA
Statistics
Matches: 310, Mismatches: 28, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
116 4 0.01
117 9 0.03
118 240 0.77
119 54 0.17
121 3 0.01
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35
Consensus pattern (117 bp):
CCTTCCAAAATTCCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGAATCTTCC
AAAATCCCATTTTTAACCTCAATTTCACCAAAAATTATCATTTTACCCCGAA
Found at i:7058965 original size:29 final size:28
Alignment explanation
Indices: 7058922--7059023 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 28
7058912 CAATTTCACC
* *
7058922 AAAAATTATCATTTTACCCCTAACCCTTCT
1 AAAAATTACCATTTTACCCCTAA-ACTT-T
7058952 AAAAATT-CCATTTTTGA-CCCTAAAACTTT
1 AAAAATTACCA-TTTT-ACCCCT-AAACTTT
*
7058981 TAAAATTACCATTTTACCCCTAAACTTTT
1 AAAAATTACCATTTTACCCCTAAAC-TTT
*
7059010 CAAAATT-CCATTTT
1 AAAAATTACCATTTT
7059024 TTGACTCCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
28 12 0.19
29 26 0.42
30 21 0.34
31 3 0.05
ACGTcount: A:0.35, C:0.25, G:0.01, T:0.39
Consensus pattern (28 bp):
AAAAATTACCATTTTACCCCTAAACTTT
Found at i:7058988 original size:177 final size:175
Alignment explanation
Indices: 7058592--7059048 Score: 456
Period size: 177 Copynumber: 2.6 Consensus size: 175
7058582 AGTCCCCAAG
* * *
7058592 CCTTCCAAAATTCCATTTTTGACCTTGAAACTTCCAAAAATTACCATTTTACCCCCGAATCTTCC
1 CCTTCAAAAATTCCATTTTTGACCCTAAAACTT-CAAAAATTACCATTTTACCCCCGAATCTTCC
* * *
7058657 AAAATCCCATTTTTAACCCCAATTTCACCAAAATTTACCGTTATACCTCCGAACTTTCCAAAATC
65 AAAATCCCATTTTTAACCCCAATTTCACAAAAAATTACCATTATACCTCCGAACTTTCCAAAATC
*
7058722 CCATTTTTGACCTCGAAACTTCCAAAAATTACCATTTTACCCTCGAA
130 CCATTTTTAACCTC-AAACTTCCAAAAATTACCATTTTACCCTCGAA
* * * * * *** ** * *
7058769 TCTTCCAAAATCCCATTTTTAACCTCGATTTCACCAAAAATTATCATTTTACCCCCG-GTCCTTC
1 CCTTCAAAAATTCCATTTTTGACC-CTAAAACTTCAAAAATTACCATTTTACCCCCGAAT-CTTC
* * * * *
7058833 CAAAATTCCATTTTTGACCTCGATTTCACAAAAAATTACCATTTTACC-CTCGAACTTTCCAAAA
64 CAAAATCCCATTTTTAACCCCAATTTCACAAAAAATTACCATTATACCTC-CGAACTTTCCAAAA
* * *
7058897 TCCCATTTTTAACCTC-AATTTCACCAAAAATTATCATTTTACCC-CTAA
128 TCCCATTTTTAACCTCAAACTT--CCAAAAATTACCATTTTACCCTCGAA
** * *
7058945 CCCTTCTAAAAATTCCATTTTTGACCCTAAAACTTTTAAAATTACCATTTTA-CCCCTAAACTTT
1 -CCTTC-AAAAATTCCATTTTTGACCCTAAAACTTCAAAAATTACCATTTTACCCCCGAATC-TT
* * * * *
7059009 TCAAAATTCCATTTTTTGACTCCAATTTCACCAAAAATTA
63 CCAAAATCCCA-TTTTTAACCCCAATTTCACAAAAAATTA
7059049 TATTTTTACC
Statistics
Matches: 224, Mismatches: 46, Indels: 19
0.78 0.16 0.07
Matches are distributed among these distances:
175 4 0.02
176 10 0.04
177 169 0.75
178 41 0.18
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (175 bp):
CCTTCAAAAATTCCATTTTTGACCCTAAAACTTCAAAAATTACCATTTTACCCCCGAATCTTCCA
AAATCCCATTTTTAACCCCAATTTCACAAAAAATTACCATTATACCTCCGAACTTTCCAAAATCC
CATTTTTAACCTCAAACTTCCAAAAATTACCATTTTACCCTCGAA
Found at i:7059024 original size:29 final size:28
Alignment explanation
Indices: 7058933--7059024 Score: 98
Period size: 29 Copynumber: 3.1 Consensus size: 28
7058923 AAAATTATCA
* *
7058933 TTTTACCCCTAACCCTTCTAAAAATTCCAT
1 TTTTACCCCTAA-ACTT-TTAAAATTCCAT
7058963 TTTTGA-CCCTAAAACTTTTAAAATTACCA-
1 TTTT-ACCCCT-AAACTTTTAAAATT-CCAT
7058992 TTTTACCCCTAAACTTTTCAAAATTCCAT
1 TTTTACCCCTAAACTTTT-AAAATTCCAT
7059021 TTTT
1 TTTT
7059025 TGACTCCAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
28 12 0.22
29 25 0.46
30 14 0.26
31 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.01, T:0.41
Consensus pattern (28 bp):
TTTTACCCCTAAACTTTTAAAATTCCAT
Found at i:7077015 original size:29 final size:31
Alignment explanation
Indices: 7076935--7077015 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 31
7076925 TCTATTAAAA
*
7076935 GATGCCTTTGTGGCGA-CCTCTGTTAAAAGG
1 GATGCCTTTGTGACGAGCCTCTGTTAAAAGG
* ** * * *
7076965 AACACCTTTGCGACAAGACTCTG-T-AAAGG
1 GATGCCTTTGTGACGAGCCTCTGTTAAAAGG
7076994 GATGCCTTTGTGACGAGCCTCT
1 GATGCCTTTGTGACGAGCCTCT
7077016 ATACAAGGAA
Statistics
Matches: 37, Mismatches: 13, Indels: 3
0.70 0.25 0.06
Matches are distributed among these distances:
29 21 0.57
30 11 0.30
31 5 0.14
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (31 bp):
GATGCCTTTGTGACGAGCCTCTGTTAAAAGG
Found at i:7078252 original size:16 final size:15
Alignment explanation
Indices: 7078218--7078251 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7078208 TAGGCTAACA
7078218 TTTTAAGGATTTTTT
1 TTTTAAGGATTTTTT
7078233 TTTTAAGGATTTTTT
1 TTTTAAGGATTTTTT
7078248 TTTT
1 TTTT
7078252 TGTTAGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.71
Consensus pattern (15 bp):
TTTTAAGGATTTTTT
Found at i:7080918 original size:21 final size:21
Alignment explanation
Indices: 7080894--7080937 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7080884 AAATATAATC
7080894 TACTTTCATTAAATGATTTAT
1 TACTTTCATTAAATGATTTAT
*
7080915 TACTTTCATTAAGTGATTTAT
1 TACTTTCATTAAATGATTTAT
7080936 TA
1 TA
7080938 GATAATCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (21 bp):
TACTTTCATTAAATGATTTAT
Found at i:7082999 original size:11 final size:12
Alignment explanation
Indices: 7082977--7083015 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
7082967 CAATTTTTTC
*
7082977 TGACACAATCAT
1 TGACAAAATCAT
7082989 TGA-AAAATCAT
1 TGACAAAATCAT
7083000 T-ACAAAATCAT
1 TGACAAAATCAT
7083011 TGACA
1 TGACA
7083016 CTAGTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 1 0.04
11 17 0.71
12 6 0.25
ACGTcount: A:0.49, C:0.18, G:0.08, T:0.26
Consensus pattern (12 bp):
TGACAAAATCAT
Found at i:7084462 original size:96 final size:96
Alignment explanation
Indices: 7084292--7084473 Score: 224
Period size: 96 Copynumber: 1.9 Consensus size: 96
7084282 AAGGACATTT
* ** * * *
7084292 GATTATCTCTATTTGAAGAAAGGTTGCACCTAGTGAGTTAAGGCGCAAATTTTCATAACTGCAGA
1 GATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTCATAACTGCAAA
**
7084357 TAAGGAAATATTACCTCGATTAAGGGTATTC
66 TAAAAAAATATTACCTCGATTAAGGGTATTC
* **
7084388 GATTATTTCGATTTGAAGAAAAATTGCATTTAGTAAGTTAAGGCACAAATTTTCGA-AACT-CGA
1 GATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTC-ATAACTGC-A
*
7084451 AATAAAAAAATATTGCCTCGATT
64 AATAAAAAAATATTACCTCGATT
7084474 TTAAATTTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
95 1 0.01
96 70 0.97
97 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (96 bp):
GATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTCATAACTGCAAA
TAAAAAAATATTACCTCGATTAAGGGTATTC
Found at i:7084719 original size:29 final size:29
Alignment explanation
Indices: 7084687--7084750 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
7084677 AAAACGGGAC
*
7084687 TTTTTGGA-TACTCGAGGGCAAAATTGTAA
1 TTTTTGGACT-CTCGAGGGCAAAATGGTAA
* * *
7084716 -TTTTGGACTTTTGGGGGCAAAATGGTAA
1 TTTTTGGACTCTCGAGGGCAAAATGGTAA
7084744 TTTTTGG
1 TTTTTGG
7084751 TAAAATCAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.39
Consensus pattern (29 bp):
TTTTTGGACTCTCGAGGGCAAAATGGTAA
Found at i:7084821 original size:30 final size:29
Alignment explanation
Indices: 7084758--7085003 Score: 264
Period size: 29 Copynumber: 8.3 Consensus size: 29
7084748 TGGTAAAATC
* * *
7084758 AGGGTTAAAATG-AATTTTTAGAAAGTTTG
1 AGGGTTAAAATGTAA-TTTTGGAAAATTTA
* *
7084787 AGGG-TAATATGGTAATTTTGGAAAGGTTTA
1 AGGGTTAAAAT-GTAATTTTGGAAA-ATTTA
7084817 AGGGTTAAAATGTAATTTTGGAAAATTTA
1 AGGGTTAAAATGTAATTTTGGAAAATTTA
7084846 AGGGTTAAAATGTAATTTTGGAAAATTTA
1 AGGGTTAAAATGTAATTTTGGAAAATTTA
*
7084875 AGGGTTAAAATGTAATTTTGGAAAATGT-
1 AGGGTTAAAATGTAATTTTGGAAAATTTA
*
7084903 AGTGGTTAAAATGTAATTTTGAAAAAGTTTA
1 AG-GGTTAAAATGTAATTTTGGAAAA-TTTA
* * *
7084934 AGGGTCAAAATATAATTTTGAGAAAGTTTA
1 AGGGTTAAAATGTAATTTTG-GAAAATTTA
* * * *
7084964 GGGGTCAAAATATAATTTTAGAAAAGTTTA
1 AGGGTTAAAATGTAATTTTGGAAAA-TTTA
* *
7084994 GGGGTCAAAA
1 AGGGTTAAAA
7085004 CACTATTTTT
Statistics
Matches: 193, Mismatches: 15, Indels: 17
0.86 0.07 0.08
Matches are distributed among these distances:
28 7 0.04
29 99 0.51
30 77 0.40
31 10 0.05
ACGTcount: A:0.40, C:0.01, G:0.23, T:0.35
Consensus pattern (29 bp):
AGGGTTAAAATGTAATTTTGGAAAATTTA
Found at i:7084827 original size:59 final size:57
Alignment explanation
Indices: 7084758--7085003 Score: 253
Period size: 59 Copynumber: 4.2 Consensus size: 57
7084748 TGGTAAAATC
* *
7084758 AGGGTTAAAATG-AATTTTTAGAAAGTTTGAGGG-TAATATGGTAATTTTGGAAAGGTTTA
1 AGGGTTAAAATGTAA-TTTTAGAAAATTT-AGGGTTAAAAT-GTAATTTTGGAAA-GTTTA
* *
7084817 AGGGTTAAAATGTAATTTTGGAAAATTTAAGGGTTAAAATGTAATTTTGGAAAATTTA
1 AGGGTTAAAATGTAATTTTAGAAAATTT-AGGGTTAAAATGTAATTTTGGAAAGTTTA
* * *
7084875 AGGGTTAAAATGTAATTTTGGAAAATGTAGTGGTTAAAATGTAATTTTGAAAAAGTTTA
1 AGGGTTAAAATGTAATTTTAGAAAATTTAG-GGTTAAAATGTAATTTTG-GAAAGTTTA
* * * * * *
7084934 AGGGTCAAAATATAATTTTGAGAAAGTTTAGGGGTCAAAATATAATTTTAGAAAAGTTTA
1 AGGGTTAAAATGTAATTTT-AGAAAATTTA-GGGTTAAAATGTAATTTT-GGAAAGTTTA
* *
7084994 GGGGTCAAAA
1 AGGGTTAAAA
7085004 CACTATTTTT
Statistics
Matches: 164, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
57 2 0.01
58 49 0.30
59 64 0.39
60 47 0.29
61 2 0.01
ACGTcount: A:0.40, C:0.01, G:0.23, T:0.35
Consensus pattern (57 bp):
AGGGTTAAAATGTAATTTTAGAAAATTTAGGGTTAAAATGTAATTTTGGAAAGTTTA
Found at i:7084901 original size:15 final size:15
Alignment explanation
Indices: 7084823--7084903 Score: 62
Period size: 15 Copynumber: 5.5 Consensus size: 15
7084813 TTTAAGGGTT
7084823 AAAATGTAATTTTGG
1 AAAATGTAATTTTGG
* **
7084838 AAAATTTAAGGGTT--
1 AAAATGTAA-TTTTGG
7084852 AAAATGTAATTTTGG
1 AAAATGTAATTTTGG
* **
7084867 AAAATTTAAGGGTT--
1 AAAATGTAA-TTTTGG
7084881 AAAATGTAATTTTGG
1 AAAATGTAATTTTGG
7084896 AAAATGTA
1 AAAATGTA
7084904 GTGGTTAAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
13 4 0.08
14 16 0.33
15 24 0.50
16 4 0.08
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (15 bp):
AAAATGTAATTTTGG
Found at i:7084927 original size:14 final size:14
Alignment explanation
Indices: 7084823--7084927 Score: 63
Period size: 14 Copynumber: 7.3 Consensus size: 14
7084813 TTTAAGGGTT
7084823 AAAATGTAATTTTGG
1 AAAATGTAATTTT-G
* **
7084838 AAAATTTAAGGGTT-
1 AAAATGTAA-TTTTG
7084852 AAAATGTAATTTTGG
1 AAAATGTAATTTT-G
* **
7084867 AAAATTTAAGGGTT-
1 AAAATGTAA-TTTTG
7084881 AAAATGTAATTTTGG
1 AAAATGTAATTTT-G
* *
7084896 AAAATGTAGTGGTT-
1 AAAATGTAAT-TTTG
7084910 AAAATGTAATTTTG
1 AAAATGTAATTTTG
7084924 AAAA
1 AAAA
7084928 AGTTTAAGGG
Statistics
Matches: 66, Mismatches: 16, Indels: 17
0.67 0.16 0.17
Matches are distributed among these distances:
13 6 0.09
14 29 0.44
15 25 0.38
16 6 0.09
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (14 bp):
AAAATGTAATTTTG
Found at i:7085012 original size:30 final size:30
Alignment explanation
Indices: 7084799--7085026 Score: 189
Period size: 30 Copynumber: 7.7 Consensus size: 30
7084789 GGTAATATGG
* * * * *
7084799 TAATTTTGGAAAGGTTTAAGGGTTAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATA
* * * *
7084829 TAATTTTGGAAAA-TTTAAGGGTTAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATA
* * * *
7084858 TAATTTTGGAAAA-TTTAAGGGTTAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATA
* * * * *
7084887 TAATTTTGGAAAA-TGTAGTGGTTAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATA
*
7084916 TAATTTT-GAAAAAGTTTAAGGGTCAAAATA
1 TAATTTTAG-AAAAGTTTAGGGGTCAAAATA
7084946 TAATTTT-GAGAAAGTTTAGGGGTCAAAATA
1 TAATTTTAGA-AAAGTTTAGGGGTCAAAATA
*
7084976 TAATTTTAGAAAAGTTTAGGGGTCAAAACA
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATA
* *
7085006 CTATTTTTAG-ATAGTTTAGGG
1 -TAATTTTAGAAAAGTTTAGGG
7085027 ACTTCTAGAG
Statistics
Matches: 180, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
28 1 0.01
29 83 0.46
30 86 0.48
31 10 0.06
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.36
Consensus pattern (30 bp):
TAATTTTAGAAAAGTTTAGGGGTCAAAATA
Found at i:7086846 original size:13 final size:13
Alignment explanation
Indices: 7086830--7086864 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7086820 TATTAAATGT
7086830 ATTTTAAATTTAA
1 ATTTTAAATTTAA
*
7086843 ATTTTCAATTTAA
1 ATTTTAAATTTAA
*
7086856 ATTTAAAAT
1 ATTTTAAAT
7086865 AAACTTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTTAAATTTAA
Found at i:7086864 original size:7 final size:6
Alignment explanation
Indices: 7086832--7086890 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
7086822 TTAAATGTAT
* * * *
7086832 TTTAAA TTTAAA TTTTCAA TTTAAA TTTAAA -ATAAA CTTAAT TTTAAA
1 TTTAAA TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
7086880 -ATAAA TTTAAA
1 TTTAAA TTTAAA
7086891 CTTTGTTGGG
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
5 8 0.20
6 28 0.68
7 5 0.12
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:7086877 original size:17 final size:17
Alignment explanation
Indices: 7086852--7086890 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7086842 AATTTTCAAT
7086852 TTAAATTTAAAATAAAC
1 TTAAATTTAAAATAAAC
* *
7086869 TTAATTTTAAAATAAAT
1 TTAAATTTAAAATAAAC
7086886 TTAAA
1 TTAAA
7086891 CTTTGTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAATTTAAAATAAAC
Found at i:7087708 original size:117 final size:119
Alignment explanation
Indices: 7087550--7087806 Score: 299
Period size: 121 Copynumber: 2.2 Consensus size: 119
7087540 CTTCGACCTA
* * *
7087550 CTTCTCAGTGTCTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACATTGAG-C-G-TTGAGTTT
1 CTTCTCTGTATCTCATCAGAAAGCTGAGGTTCGAAGATTTGCTCACATTGAGCCGGTTTGA-TTT
* * **
7087612 GGTATACTTCTCTGTGTCTCATCAGGAAGATGACTGTC-TCGTTTGTTTCAATTCG
65 GGTATACTTCTCAGTGTCTCATCAGGAAAATGACTG-CATCACTTGTTTCAATTCG
* *
7087667 CTTCTCTGTATCTCATCAGAAAGTTG-GGATTCGAAGATTTGCTCGCATTGAGCCTGGGTTTGAT
1 CTTCTCTGTATCTCATCAGAAAGCTGAGG-TTCGAAGATTTGCTCACATTGAGCC--GGTTTGAT
* * *
7087731 TTGGTTTTCTTCTCAGTGTCTCATCAGGAAAATGACTGCATCACTTGTTTTAATTCG
63 TTGGTATACTTCTCAGTGTCTCATCAGGAAAATGACTGCATCACTTGTTTCAATTCG
* * *
7087788 ATTCTCTGGATCTCCTCAG
1 CTTCTCTGTATCTCATCAG
7087807 GAAGACGAAT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
116 2 0.02
117 44 0.37
118 1 0.01
120 1 0.01
121 66 0.56
122 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (119 bp):
CTTCTCTGTATCTCATCAGAAAGCTGAGGTTCGAAGATTTGCTCACATTGAGCCGGTTTGATTTG
GTATACTTCTCAGTGTCTCATCAGGAAAATGACTGCATCACTTGTTTCAATTCG
Found at i:7088075 original size:38 final size:38
Alignment explanation
Indices: 7088031--7088137 Score: 119
Period size: 39 Copynumber: 2.8 Consensus size: 38
7088021 GATTGATGGT
*
7088031 GATCTGCCTCAA-CTTGGGGTAAAAGATCAGATGATTGCA
1 GATCTGCCCCAAGCTTGGGGTAAAAGATCAGATGA-TG-A
* * ** *
7088070 -ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGA
1 GATCTGCCCCAAGCTTGGGGTAAAAGATCAGATGATGA
7088107 TGATCTGCCCCAAGCTTGGGGTAAAAGATCA
1 -GATCTGCCCCAAGCTTGGGGTAAAAGATCA
7088138 AATGGCTTCA
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
37 1 0.02
38 12 0.22
39 42 0.76
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (38 bp):
GATCTGCCCCAAGCTTGGGGTAAAAGATCAGATGATGA
Found at i:7088091 original size:39 final size:39
Alignment explanation
Indices: 7088032--7088177 Score: 111
Period size: 39 Copynumber: 3.8 Consensus size: 39
7088022 ATTGATGGTG
* *
7088032 ATCTGCCTCAA-CTTGGGGTAAAAGATCAGATGATTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAGATGATTGCA
* ** *
7088070 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGTTGA-TG-A
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAGATGATTGCA
* * *
7088107 TGATCTGCCCCAAGCTTGGGGTAAAAGATCAAATGGCTT-CA
1 --ATCTGCCCCAAGCTCGGGGTAAAAGATCAGAT-GATTGCA
* * ** *
7088148 ATTTGCCTCTGGCTCGGGGTAAGAGATCAG
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAG
7088178 CCTATTCATT
Statistics
Matches: 82, Mismatches: 20, Indels: 11
0.73 0.18 0.10
Matches are distributed among these distances:
37 1 0.01
38 12 0.15
39 66 0.80
40 1 0.01
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAAAGATCAGATGATTGCA
Found at i:7088163 original size:78 final size:77
Alignment explanation
Indices: 7088023--7088174 Score: 207
Period size: 78 Copynumber: 2.0 Consensus size: 77
7088013 GTAAGGTTGA
* * *
7088023 TTGATGGTGATCTGCCTCAACTTGGGGTAAAAGATCAGATGATTGCAATCTGCCCCAAGCTCGGG
1 TTGATGATGATCTGCCCCAACTTGGGGTAAAAGATCAAATGATTGCAATCTGCCCCAAGCTCGGG
7088088 GTAAGAGATTGG
66 GTAAGAGATTGG
* * * **
7088100 TTGATGATGATCTGCCCCAAGCTTGGGGTAAAAGATCAAATGGCTT-CAATTTGCCTCTGGCTCG
1 TTGATGATGATCTGCCCCAA-CTTGGGGTAAAAGATCAAAT-GATTGCAATCTGCCCCAAGCTCG
7088164 GGGTAAGAGAT
64 GGGTAAGAGAT
7088175 CAGCCTATTC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
77 18 0.28
78 44 0.68
79 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (77 bp):
TTGATGATGATCTGCCCCAACTTGGGGTAAAAGATCAAATGATTGCAATCTGCCCCAAGCTCGGG
GTAAGAGATTGG
Found at i:7088402 original size:92 final size:92
Alignment explanation
Indices: 7088277--7088872 Score: 971
Period size: 92 Copynumber: 6.5 Consensus size: 92
7088267 TTTGATATCA
* *** * *
7088277 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTCGCTATTGTAGTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
7088342 CTTCAAGAGGATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
*
7088369 AAACTTCATCTTGCTCTTACTACAACTAT-AGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 AAGCTTCATCTTGCTCTTACTACAACT-TCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
7088433 ACTTCAAGAGGATAGGAATTGATGTTTG
65 ACTTCAAGAGGATAGGAATTGATGTTTG
*
7088461 AAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
7088526 CTTTAAGAGGATATGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* *
7088553 AAGCTTTATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
7088618 CTTCAAGAGAATAGGAATTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* * * *
7088645 AAGCTTGATCTTGTTCTTACTACAACTTCAGAGAGATAAATACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
* *
7088710 CTTCAAGAGGATAAGAGTTGATGTTTG
66 CTTCAAGAGGATAGGAATTGATGTTTG
* *
7088737 AAGTTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT-CAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
7088801 CTTCAAGAGGATAGGAATTGATGTTTA
66 CTTCAAGAGGATAGGAATTGATGTTTG
7088828 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTT
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTT
7088873 TTCCCTTTTG
Statistics
Matches: 470, Mismatches: 32, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
91 71 0.15
92 398 0.85
93 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (92 bp):
AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
CTTCAAGAGGATAGGAATTGATGTTTG
Found at i:7089047 original size:101 final size:101
Alignment explanation
Indices: 7088867--7089111 Score: 310
Period size: 101 Copynumber: 2.4 Consensus size: 101
7088857 AGAGAGATAA
* * * * *
7088867 AGACTTTTCCCTTTTGTCTTTTTGCGGTACTGGATCCACCGTTGCGGTCTTAGATCTTTCCTATC
1 AGACCTTTCCCTTTTGTCTTTTTGCGGTACTGAATCCACCATTACGGTCTTAGATCTTTCCCATC
* * * * ** *
7088932 GTGTCTTCTGAGGTACATGGTCTGCTGTTGTGACTT
66 GTGTCTTCTAAGGTACACGGTCCGCCGTTGCAAATT
* ** * * *
7088968 AGACCTTTCCCTTTTGTCTTTTTGCGATACTGAATCTGCTATTATGGTCTTAGATCTTTCCCGTC
1 AGACCTTTCCCTTTTGTCTTTTTGCGGTACTGAATCCACCATTACGGTCTTAGATCTTTCCCATC
7089033 GTGTCTTCTAAGGTACACGGTCCGCCGTTGCAAATT
66 GTGTCTTCTAAGGTACACGGTCCGCCGTTGCAAATT
* *
7089069 AGACCTTTCCTTTTTGTCTTTTTGCGGTACTGAATCCGCCATT
1 AGACCTTTCCCTTTTGTCTTTTTGCGGTACTGAATCCACCATT
7089112 GTAGTTTTTT
Statistics
Matches: 122, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 122 1.00
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (101 bp):
AGACCTTTCCCTTTTGTCTTTTTGCGGTACTGAATCCACCATTACGGTCTTAGATCTTTCCCATC
GTGTCTTCTAAGGTACACGGTCCGCCGTTGCAAATT
Found at i:7090044 original size:1 final size:1
Alignment explanation
Indices: 7090034--7090115 Score: 83
Period size: 1 Copynumber: 82.0 Consensus size: 1
7090024 TCGACCTCTC
* * * * * *
7090034 TTTTTCTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTTTTTTTGTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
7090099 GTTTTTTCTTTTGTTTT
1 TTTTTTTTTTTTTTTTT
7090116 ATTCATTGAA
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:7090076 original size:29 final size:28
Alignment explanation
Indices: 7090043--7090115 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
7090033 CTTTTTCTTT
*
7090043 TTTTTTTTTTTTTTTGTTTTTTTGTTTTG
1 TTTTTTTTTTTTTTTGTTTTTGT-TTTTG
7090072 TTTTTTTTTTTTTTTGTTTTTGTTTTTG
1 TTTTTTTTTTTTTTTGTTTTTGTTTTTG
*
7090100 TTTTTTCTTTTGTTTT
1 TTTTTT-TTTTTTTTT
7090116 ATTCATTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 11 0.27
29 30 0.73
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (28 bp):
TTTTTTTTTTTTTTTGTTTTTGTTTTTG
Found at i:7090078 original size:40 final size:40
Alignment explanation
Indices: 7090034--7090115 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
7090024 TCGACCTCTC
* *
7090034 TTTTTCTTTTTTTT-TTTTT-TTTTTGTTTTTTTGTTTTGT
1 TTTTTTTTTTTTTTGTTTTTGTTTTTG-TTTTTTCTTTTGT
7090073 TTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTTTTGT
1 TTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTTTTGT
7090113 TTT
1 TTT
7090116 ATTCATTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
39 13 0.33
40 20 0.51
41 6 0.15
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (40 bp):
TTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTTTTGT
Found at i:7090082 original size:33 final size:33
Alignment explanation
Indices: 7090035--7090103 Score: 106
Period size: 32 Copynumber: 2.1 Consensus size: 33
7090025 CGACCTCTCT
*
7090035 TTTTCTTTTTTTTTTTTTTT-TTTGTT-TTTTTG
1 TTTTGTTTTTTTTTTTTTTTGTTT-TTGTTTTTG
7090067 TTTTGTTTTTTTTTTTTTTTGTTTTTGTTTTTG
1 TTTTGTTTTTTTTTTTTTTTGTTTTTGTTTTTG
7090100 TTTT
1 TTTT
7090104 TTCTTTTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 21 0.62
33 13 0.38
ACGTcount: A:0.00, C:0.01, G:0.09, T:0.90
Consensus pattern (33 bp):
TTTTGTTTTTTTTTTTTTTTGTTTTTGTTTTTG
Found at i:7090086 original size:35 final size:35
Alignment explanation
Indices: 7090040--7090115 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
7090030 TCTCTTTTTC
*
7090040 TTTTTTTTTTTTT-TTTTTGTTTTT-TTGTTTTGTT
1 TTTTTTTTTTTTTGTTTTTGTTTTTGTT-TTTTCTT
7090074 TTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTT
1 TTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTT
*
7090109 TTGTTTT
1 TTTTTTT
7090116 ATTCATTGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 13 0.34
35 23 0.61
36 2 0.05
ACGTcount: A:0.00, C:0.01, G:0.09, T:0.89
Consensus pattern (35 bp):
TTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCTT
Found at i:7095772 original size:30 final size:30
Alignment explanation
Indices: 7095722--7095903 Score: 246
Period size: 30 Copynumber: 6.0 Consensus size: 30
7095712 GTGAAATCGT
*
7095722 GGTCAAAAATGGAATTTTGG-AAAGTTT-GAG
1 GGTC-AAAATGTAATTTTGGAAAAGTTTAG-G
7095752 GGT-AAAATGGTAATTTTTGGAAAAGTTTAGG
1 GGTCAAAAT-GTAA-TTTTGGAAAAGTTTAGG
7095783 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
7095813 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
*
7095843 GGTCAAAATATAATTTTGGAAAAGTTTAGG
1 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
* * *
7095873 GGTTAAAATGCTATTTTTGG-ATAGTTTAGG
1 GGTCAAAATG-TAATTTTGGAAAAGTTTAGG
7095903 G
1 G
7095904 ACTTTCAGGG
Statistics
Matches: 140, Mismatches: 6, Indels: 12
0.89 0.04 0.08
Matches are distributed among these distances:
28 5 0.04
29 3 0.02
30 103 0.74
31 23 0.16
32 6 0.04
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (30 bp):
GGTCAAAATGTAATTTTGGAAAAGTTTAGG
Found at i:7096879 original size:14 final size:15
Alignment explanation
Indices: 7096855--7096885 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7096845 TCACCTTCTC
7096855 TTTTATATATATATA
1 TTTTATATATATATA
7096870 TTTT-TATATATATA
1 TTTTATATATATATA
7096884 TT
1 TT
7096886 AAATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTATATATATATA
Found at i:7097715 original size:17 final size:17
Alignment explanation
Indices: 7097693--7097778 Score: 54
Period size: 17 Copynumber: 5.3 Consensus size: 17
7097683 TGAACATTTA
**
7097693 TTAAATGTATTTTAAAT
1 TTAAATGTATAATAAAT
*
7097710 TTAAATTTATAATAAAT
1 TTAAATGTATAATAAAT
*
7097727 TTAAAT-T-T--TCAAT
1 TTAAATGTATAATAAAT
* * *
7097740 TTAAATTTAAAATAAAC
1 TTAAATGTATAATAAAT
* * *
7097757 TTAATTTTAAAATAAAT
1 TTAAATGTATAATAAAT
7097774 TTAAA
1 TTAAA
7097779 CTTTGTTGAG
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.18
14 1 0.02
15 1 0.02
16 1 0.02
17 42 0.76
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (17 bp):
TTAAATGTATAATAAAT
Found at i:7097717 original size:13 final size:13
Alignment explanation
Indices: 7097701--7097752 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
7097691 TATTAAATGT
7097701 ATTTTAAATTTAA
1 ATTTTAAATTTAA
7097714 ATTTATAATAAATTTAA
1 A-TT-T--TAAATTTAA
*
7097731 ATTTTCAATTTAA
1 ATTTTAAATTTAA
*
7097744 ATTTAAAAT
1 ATTTTAAAT
7097753 AAACTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 16 0.50
14 2 0.06
15 2 0.06
16 2 0.06
17 10 0.31
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTTTAAATTTAA
Found at i:7097735 original size:30 final size:29
Alignment explanation
Indices: 7097701--7097778 Score: 104
Period size: 30 Copynumber: 2.7 Consensus size: 29
7097691 TATTAAATGT
* *
7097701 ATTTTAAATTTAAATTTATAATAAATTTAA
1 ATTTTAAATTTAAATTTAAAATAAACTT-A
*
7097731 ATTTTCAATTTAAATTTAAAATAAACTTA
1 ATTTTAAATTTAAATTTAAAATAAACTTA
*
7097760 ATTTTAAA-ATAAATTTAAA
1 ATTTTAAATTTAAATTTAAA
7097779 CTTTGTTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 10 0.23
29 8 0.19
30 25 0.58
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTTTAAATTTAAATTTAAAATAAACTTA
Found at i:7097752 original size:7 final size:6
Alignment explanation
Indices: 7097703--7097778 Score: 61
Period size: 6 Copynumber: 13.0 Consensus size: 6
7097693 TTAAATGTAT
*
7097703 TTTAAA TTTAAA TTTATAA --TAAA TTTAAA TTTTCAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA -TTTAAA TTTAAA TTTAAA
* * * *
7097751 -ATAAA CTTAAT TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7097779 CTTTGTTGAG
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
4 2 0.04
5 10 0.18
6 36 0.65
7 7 0.13
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:7099422 original size:23 final size:25
Alignment explanation
Indices: 7099396--7099441 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7099386 CCAATTAGGG
7099396 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
7099419 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
7099442 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:7102241 original size:20 final size:21
Alignment explanation
Indices: 7102216--7102257 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7102206 CGATAATCAA
7102216 TTTTATGATTT-CACTCCTCG
1 TTTTATGATTTCCACTCCTCG
*
7102236 TTTTATGATTTCCACTTCTCG
1 TTTTATGATTTCCACTCCTCG
7102257 T
1 T
7102258 ATTTGGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.14, C:0.24, G:0.10, T:0.52
Consensus pattern (21 bp):
TTTTATGATTTCCACTCCTCG
Found at i:7112221 original size:18 final size:16
Alignment explanation
Indices: 7112179--7112222 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
7112169 GATGATGAAC
7112179 AATAATAATAATTTTA
1 AATAATAATAATTTTA
7112195 AA-AATAATAATTTAATA
1 AATAATAATAATTT--TA
*
7112212 AATAAAAATAA
1 AATAATAATAA
7112223 GCTAGAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 2 0.08
17 4 0.17
18 7 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AATAATAATAATTTTA
Found at i:7115025 original size:50 final size:49
Alignment explanation
Indices: 7114967--7115145 Score: 169
Period size: 62 Copynumber: 3.3 Consensus size: 49
7114957 ATTATATAAA
*
7114967 TATTTAAAGTTAAAATATACGATATGAAAAAAAATAAAAAAGGAAATATT
1 TATTTAAAGTTAAAATATATGATATGAAAAAAAATAAAAAA-GAAATATT
* *
7115017 TATTTAAAGTTAAAATATATGATATGGAAAAAATAAAGAAAGAAATAATTTTATTATAT
1 TATTTAAAGTTAAAATATATGATAT-G-AAAAA-AAATAAA-AAAGAA----A-TAT-T
*
7115076 AAATATTTAAAGTTATAATATATGATATGAAAAAAAGAAATAAAAAAGAAATATT
1 ---TATTTAAAGTTAAAATATATGATATG--AAAAA-AAATAAAAAAGAAATATT
7115131 TATTTAAAGTTAAAA
1 TATTTAAAGTTAAAA
7115146 AGTTAAAATA
Statistics
Matches: 107, Mismatches: 8, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
50 24 0.22
51 1 0.01
52 19 0.18
53 8 0.07
54 3 0.03
55 1 0.01
56 3 0.03
57 2 0.02
58 3 0.03
59 1 0.01
61 6 0.06
62 36 0.34
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.32
Consensus pattern (49 bp):
TATTTAAAGTTAAAATATATGATATGAAAAAAAATAAAAAAGAAATATT
Found at i:7115087 original size:62 final size:60
Alignment explanation
Indices: 7115017--7115196 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 60
7115007 AGGAAATATT
*
7115017 TATTTAAAGTTAAAATATATGATATGGAAAAAATAAAGAAAGAAATAATTTTATTATATAAA
1 TATTTAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTTTATT-TA-AAA
* * * * *
7115079 TATTTAAAGTTATAATATATGATATGAAAAAAAGAAATAAA-AAAGAAATATTTATTTAAAG
1 TATTTAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAA-TAAT-TTTATTTAAAA
** *
7115140 T-TAAAAAGTTAAAATATATTATATGAAAAAAATAAAGAAAGAAATAATTTTATTTAA
1 TATTTAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTTTATTTAA
7115197 TGTTCAAAGT
Statistics
Matches: 102, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
59 9 0.09
60 36 0.35
61 9 0.09
62 42 0.41
63 6 0.06
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (60 bp):
TATTTAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTTTATTTAAAA
Found at i:7115172 original size:122 final size:112
Alignment explanation
Indices: 7114956--7115193 Score: 334
Period size: 122 Copynumber: 2.0 Consensus size: 112
7114946 AATTGAAATA
7114956 TATTATATAAATATTTAAAGTTAAAATATACGATATGAAAAAAAATAAAAAAGGAAATATTTATT
1 TATTATATAAATATTTAAAGTTAAAATATACGATATGAAAAAAAATAAAAAAGGAAATATTTATT
*
7115021 TAAAGTTAAAATATATGATATGGAAAAAATAAAGAAAGAAATAATTT
66 TAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTT
* *
7115068 TATTATATAAATATTTAAAGTTATAATATATGATATGAAAAAAAGAAATAAAAAA-GAAATATTT
1 TATTATATAAATATTTAAAGTTAAAATATACGATATG--AAAAA-AAATAAAAAAGGAAATATTT
*
7115132 ATTTAAAGTTAAAAAGTTAAAATATATTATATGAAAAAAATAAAGAAAGAAATAATTT
63 A--T----TT--AAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTT
7115190 TATT
1 TATT
7115194 TAATGTTCAA
Statistics
Matches: 111, Mismatches: 4, Indels: 12
0.87 0.03 0.09
Matches are distributed among these distances:
112 35 0.32
114 15 0.14
115 10 0.09
116 1 0.01
120 2 0.02
122 48 0.43
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (112 bp):
TATTATATAAATATTTAAAGTTAAAATATACGATATGAAAAAAAATAAAAAAGGAAATATTTATT
TAAAGTTAAAATATATGATATGAAAAAAATAAAGAAAGAAATAATTT
Found at i:7117105 original size:8 final size:8
Alignment explanation
Indices: 7117092--7117136 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
7117082 AATAACAACT
7117092 TAAAAAAA
1 TAAAAAAA
7117100 TAAAAAAAA
1 T-AAAAAAA
7117109 TAAAAAAA
1 TAAAAAAA
*
7117117 AAACAAAAA
1 TAA-AAAAA
*
7117126 TAAGAAAA
1 TAAAAAAA
7117134 TAA
1 TAA
7117137 CAATTTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 17 0.53
9 15 0.47
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.11
Consensus pattern (8 bp):
TAAAAAAA
Found at i:7117108 original size:10 final size:9
Alignment explanation
Indices: 7117093--7117133 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
7117083 ATAACAACTT
7117093 AAAAAAATA
1 AAAAAAATA
7117102 AAAAAAATA
1 AAAAAAATA
7117111 AAAAAAA-A
1 AAAAAAATA
*
7117119 ACAAAAATA
1 AAAAAAATA
7117128 AGAAAA
1 A-AAAA
7117134 TAACAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 7 0.25
9 18 0.64
10 3 0.11
ACGTcount: A:0.88, C:0.02, G:0.02, T:0.07
Consensus pattern (9 bp):
AAAAAAATA
Found at i:7117133 original size:20 final size:20
Alignment explanation
Indices: 7117093--7117133 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7117083 ATAACAACTT
* *
7117093 AAAAAAATAAAAAAAATAAA
1 AAAAAAACAAAAAAAAGAAA
*
7117113 AAAAAAACAAAAATAAGAAA
1 AAAAAAACAAAAAAAAGAAA
7117133 A
1 A
7117134 TAACAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.88, C:0.02, G:0.02, T:0.07
Consensus pattern (20 bp):
AAAAAAACAAAAAAAAGAAA
Found at i:7117138 original size:17 final size:17
Alignment explanation
Indices: 7117092--7117139 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
7117082 AATAACAACT
*
7117092 TAAAAAAATAAAAAAAA
1 TAAAAAAATAACAAAAA
*
7117109 TAAAAAAAAAACAAAAA
1 TAAAAAAATAACAAAAA
*
7117126 TAAGAAAATAACAA
1 TAAAAAAATAACAA
7117140 TTTTTGACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.83, C:0.04, G:0.02, T:0.10
Consensus pattern (17 bp):
TAAAAAAATAACAAAAA
Found at i:7121493 original size:26 final size:26
Alignment explanation
Indices: 7121461--7121575 Score: 95
Period size: 26 Copynumber: 4.4 Consensus size: 26
7121451 CTTAAGCCGG
*
7121461 TGATTATTTAGCAAGCTTTGAGTCAA
1 TGATTATTTAGCAGGCTTTGAGTCAA
* * * * **
7121487 TGTTTATCTATCAGGATTTGAGTCGG
1 TGATTATTTAGCAGGCTTTGAGTCAA
* * *
7121513 TGATTATTTAACATGCTTTGAGTCGA
1 TGATTATTTAGCAGGCTTTGAGTCAA
* * * * *
7121539 TGTTTATCTATCAGGCTTTGAGCCAG
1 TGATTATTTAGCAGGCTTTGAGTCAA
7121565 TGATTATTTAG
1 TGATTATTTAG
7121576 AATGTACTAT
Statistics
Matches: 66, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (26 bp):
TGATTATTTAGCAGGCTTTGAGTCAA
Found at i:7121520 original size:52 final size:52
Alignment explanation
Indices: 7121455--7121575 Score: 188
Period size: 52 Copynumber: 2.3 Consensus size: 52
7121445 GCAGGCCTTA
7121455 AGCCGGTGATTATTTAGCAAGCTTTGAGTCAATGTTTATCTATCAGGATTTG
1 AGCCGGTGATTATTTAGCAAGCTTTGAGTCAATGTTTATCTATCAGGATTTG
* * * * *
7121507 AGTCGGTGATTATTTAACATGCTTTGAGTCGATGTTTATCTATCAGGCTTTG
1 AGCCGGTGATTATTTAGCAAGCTTTGAGTCAATGTTTATCTATCAGGATTTG
*
7121559 AGCCAGTGATTATTTAG
1 AGCCGGTGATTATTTAG
7121576 AATGTACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (52 bp):
AGCCGGTGATTATTTAGCAAGCTTTGAGTCAATGTTTATCTATCAGGATTTG
Found at i:7121964 original size:26 final size:26
Alignment explanation
Indices: 7121897--7121965 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 26
7121887 GCTGTGATTA
*
7121897 ACAAGAACTTTGATAATAACATTATG
1 ACAAGAACTTTGTTAATAACATTATG
* * * *
7121923 ACAAGAACTCTATTAATAACCTTGTG
1 ACAAGAACTTTGTTAATAACATTATG
**
7121949 ACTGGAACTTTGTTAAT
1 ACAAGAACTTTGTTAAT
7121966 TAATCTATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (26 bp):
ACAAGAACTTTGTTAATAACATTATG
Found at i:7124493 original size:32 final size:32
Alignment explanation
Indices: 7124457--7124521 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7124447 CACAACTTGG
* * *
7124457 GTTTAAATCGCGTTAGTTATATTATTAATAGA
1 GTTTAAATCACGCTAATTATATTATTAATAGA
7124489 GTTTAAATCACGCTAATTATATTATTAATAGA
1 GTTTAAATCACGCTAATTATATTATTAATAGA
7124521 G
1 G
7124522 CTTTGTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.42
Consensus pattern (32 bp):
GTTTAAATCACGCTAATTATATTATTAATAGA
Found at i:7125166 original size:28 final size:28
Alignment explanation
Indices: 7125126--7125192 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
7125116 TATTTATGTT
7125126 GTTAAATAATCTTGTACTTCGTCTACTA
1 GTTAAATAATCTTGTACTTCGTCTACTA
*
7125154 GTTAAATAATCTTTTACTTCGTCTACTA
1 GTTAAATAATCTTGTACTTCGTCTACTA
*
7125182 GTTATATAATC
1 GTTAAATAATC
7125193 GATCAATGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (28 bp):
GTTAAATAATCTTGTACTTCGTCTACTA
Found at i:7128077 original size:2 final size:2
Alignment explanation
Indices: 7128072--7128104 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7128062 TCGTCCATTG
7128072 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7128105 GCCTCTGCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7128571 original size:39 final size:40
Alignment explanation
Indices: 7128518--7128594 Score: 129
Period size: 39 Copynumber: 1.9 Consensus size: 40
7128508 AAGAGGTATG
*
7128518 TCCAATATGAAAAGGATTGTGACTCTTTAAAAGGTGTCTA
1 TCCAATATGAAAAGGATTGTGACTCTTCAAAAGGTGTCTA
*
7128558 TCCAATTTG-AAAGGATTGTGACTCTTCAAAAGGTGTC
1 TCCAATATGAAAAGGATTGTGACTCTTCAAAAGGTGTC
7128595 CATTGATTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 27 0.77
40 8 0.23
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (40 bp):
TCCAATATGAAAAGGATTGTGACTCTTCAAAAGGTGTCTA
Found at i:7133622 original size:23 final size:22
Alignment explanation
Indices: 7133575--7133622 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
7133565 ATAAAATTAT
* *
7133575 TAAATATTAAAATAAAACAATA
1 TAAATATTAAAATAAAAAAAAA
7133597 TAAATATTTAAAA-AAATAAAAAA
1 TAAATA-TTAAAATAAA-AAAAAA
7133620 TAA
1 TAA
7133623 TATGAACAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAATATTAAAATAAAAAAAAA
Found at i:7147348 original size:154 final size:153
Alignment explanation
Indices: 7147176--7147455 Score: 452
Period size: 153 Copynumber: 1.8 Consensus size: 153
7147166 TTGAAAGCTC
* * *
7147176 TTGAAAAGGATATCCGATTGGCATGAATCACGAAAATCACACTTAACACGTTAAAGCGCGATTTT
1 TTGAAAAGGATATCCGATTCGCATGAATCACGAAAATCACACTTAACACGTTAAAGCACGA-TCT
* *
7147241 TTCGAAGTTTTCACACGAAAGGACATTGCCTCATTTTAAAATTATTTGTGATATAGATATATAAA
65 TTCGAAGTTTTCACACGAAAGGACATTGCCTCACTTTAAAATTATTTGTAATATAGATATATAAA
7147306 AATTGAAGGATGTTTCGGGAACTT
130 AATTGAAGGATGTTTCGGGAACTT
* * *
7147330 TTGAAGAGGATATTCGATTCGCATGAATTACGAAAATCACACTTAACACGTTAAAGCACGATCTT
1 TTGAAAAGGATATCCGATTCGCATGAATCACGAAAATCACACTTAACACGTTAAAGCACGATCTT
* * *
7147395 TCGAAGTTTTCACATGACAGGACATTGCCTCGCTTTAAAATTATTTGTAATATAGATATAT
66 TCGAAGTTTTCACACGAAAGGACATTGCCTCACTTTAAAATTATTTGTAATATAGATATAT
7147456 GTTTTGAGAA
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
153 59 0.51
154 56 0.49
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (153 bp):
TTGAAAAGGATATCCGATTCGCATGAATCACGAAAATCACACTTAACACGTTAAAGCACGATCTT
TCGAAGTTTTCACACGAAAGGACATTGCCTCACTTTAAAATTATTTGTAATATAGATATATAAAA
ATTGAAGGATGTTTCGGGAACTT
Found at i:7147991 original size:59 final size:58
Alignment explanation
Indices: 7147922--7148149 Score: 300
Period size: 59 Copynumber: 3.9 Consensus size: 58
7147912 TTTTTGACTT
7147922 TTGGGGGTAAAAAT-GTAATTTTTGGTGAAATCAGGGTCAAAAATGGAATTTTGGAAAG
1 TTGGGGGTAAAAATGGTAATTTTTGGTGAAATC-GGGTCAAAAATGGAATTTTGGAAAG
* * * * *
7147980 CTTGGGGGT-AAAATGGTAACTTTTGGTGAAACCGCGATTAAAAATAGAATTTTGGAAAG
1 -TTGGGGGTAAAAATGGTAATTTTTGGTGAAATCG-GGTCAAAAATGGAATTTTGGAAAG
* * *
7148039 TTTGGGGTTAAAATGGTAATTTTTGGTGAAATCGGGATTAAAAATGGAATTTTGGAAAG
1 TTGGGGGTAAAAATGGTAATTTTTGGTGAAATCGGG-TCAAAAATGGAATTTTGGAAAG
* *
7148098 TTTGGGGGT-AAAATTGTAATTTTTGGTGAAATTGGGTCAAAAATGGAATTTT
1 -TTGGGGGTAAAAATGGTAATTTTTGGTGAAATCGGGTCAAAAATGGAATTTT
7148150 AGAGATTTTG
Statistics
Matches: 150, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
58 29 0.19
59 114 0.76
60 7 0.05
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (58 bp):
TTGGGGGTAAAAATGGTAATTTTTGGTGAAATCGGGTCAAAAATGGAATTTTGGAAAG
Found at i:7147992 original size:29 final size:28
Alignment explanation
Indices: 7147955--7148149 Score: 96
Period size: 29 Copynumber: 6.6 Consensus size: 28
7147945 GGTGAAATCA
7147955 GGGTCAAAAATGGAATTTTGGAAAGCTTGG
1 GGGT-AAAAATGGAATTTTGGAAAG-TTGG
** *
7147985 GGGT-AAAATGGTAACTTTTGGTGAAA-CCGC
1 GGGTAAAAATGG-AA-TTTT-G-GAAAGTTGG
** * *
7148015 GATTAAAAATAGAATTTTGGAAAGTTTG
1 GGGTAAAAATGGAATTTTGGAAAGTTGG
* *
7148043 GGGTTAAAATGGTAATTTTTGGTGAAA-TCGG
1 GGGTAAAAATGG-AA-TTTT-G-GAAAGTTGG
**
7148074 GATTAAAAATGGAATTTTGGAAAGTTTGG
1 GGGTAAAAATGGAATTTTGGAAAG-TTGG
* *
7148103 GGGTAAAATTGTAATTTTTGGTGAAA-TT--
1 GGGTAAAAATGGAA-TTTT-G-GAAAGTTGG
7148131 GGGTCAAAAATGGAATTTT
1 GGGT-AAAAATGGAATTTT
7148150 AGAGATTTTG
Statistics
Matches: 123, Mismatches: 26, Indels: 34
0.67 0.14 0.19
Matches are distributed among these distances:
27 8 0.07
28 25 0.20
29 33 0.27
30 25 0.20
31 20 0.16
32 12 0.10
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTAAAAATGGAATTTTGGAAAGTTGG
Found at i:7148080 original size:30 final size:29
Alignment explanation
Indices: 7147925--7148129 Score: 97
Period size: 29 Copynumber: 7.0 Consensus size: 29
7147915 TTGACTTTTG
*
7147925 GGGGTAAAAAT-GTAATTTTTGGTGAAATC
1 GGGGTTAAAATGGTAA-TTTTGGTGAAATC
* * *
7147954 AGGGTCAAAAATGG-AATTTT-G-GAAAGCTT
1 GGGGT-TAAAATGGTAATTTTGGTGAAA--TC
* *
7147983 GGGGGTAAAATGGTAACTTTTGGTGAAACC
1 GGGGTTAAAATGGTAA-TTTTGGTGAAATC
* * * *
7148013 GCGATTAAAAATAG-AATTTT-G-GAAAGTTT
1 GGGGTT-AAAATGGTAATTTTGGTGAAA--TC
7148042 GGGGTTAAAATGGTAATTTTTGGTGAAATC
1 GGGGTTAAAATGGTAA-TTTTGGTGAAATC
* *
7148072 GGGATTAAAAATGG-AATTTT-G-GAAAGTTT
1 GGGGTT-AAAATGGTAATTTTGGTGAAA--TC
* *
7148101 GGGGGTAAAATTGTAATTTTTGGTGAAAT
1 GGGGTTAAAATGGTAA-TTTTGGTGAAAT
7148130 TGGGTCAAAA
Statistics
Matches: 132, Mismatches: 22, Indels: 43
0.67 0.11 0.22
Matches are distributed among these distances:
27 12 0.09
28 22 0.17
29 35 0.27
30 34 0.26
31 17 0.13
32 12 0.09
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (29 bp):
GGGGTTAAAATGGTAATTTTGGTGAAATC
Found at i:7148133 original size:30 final size:29
Alignment explanation
Indices: 7147896--7148133 Score: 91
Period size: 30 Copynumber: 8.1 Consensus size: 29
7147886 TTGGATGCCC
* **
7147896 GGGGGTAAAATGGTAATTTT--TGACTTTT
1 GGGGGTAAAATTGTAATTTTGGTGA-AATT
*
7147924 GGGGGTAAAAATGTAATTTTTGGTGAAA-T
1 GGGGGTAAAATTGTAA-TTTTGGTGAAATT
** * *
7147953 CAGGGTCAAAAATGGAATTTT-G-GAAAGCTT
1 GGGGGT-AAAATTGTAATTTTGGTGAAA--TT
* **
7147983 GGGGGTAAAATGGTAACTTTTGGTGAAACC
1 GGGGGTAAAATTGTAA-TTTTGGTGAAATT
* ** *
7148013 GCGATTAAAAATAG-AATTTT-G-GAAAGTTT
1 GGGGGT-AAAATTGTAATTTTGGTGAAA--TT
* * *
7148042 GGGGTTAAAATGGTAATTTTTGGTGAAATC
1 GGGGGTAAAATTGTAA-TTTTGGTGAAATT
** * *
7148072 GGGATTAAAAATGGAATTTT-G-GAAAGTTT
1 GGGGGTAAAATTGTAATTTTGGTGAAA--TT
7148101 GGGGGTAAAATTGTAATTTTTGGTGAAATT
1 GGGGGTAAAATTGTAA-TTTTGGTGAAATT
7148131 GGG
1 GGG
7148134 TCAAAAATGG
Statistics
Matches: 155, Mismatches: 33, Indels: 42
0.67 0.14 0.18
Matches are distributed among these distances:
27 12 0.08
28 23 0.15
29 47 0.30
30 49 0.32
31 12 0.08
32 12 0.08
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (29 bp):
GGGGGTAAAATTGTAATTTTGGTGAAATT
Found at i:7149204 original size:10 final size:10
Alignment explanation
Indices: 7149187--7149220 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7149177 CTTTTTTTAA
7149187 TAATTATTAT
1 TAATTATTAT
*
7149197 TTATTATTAT
1 TAATTATTAT
*
7149207 TAATTAATAT
1 TAATTATTAT
7149217 TAAT
1 TAAT
7149221 GAATTTGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATTATTAT
Found at i:7149488 original size:21 final size:21
Alignment explanation
Indices: 7149462--7149501 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7149452 ACTTTGAGTC
*
7149462 TATTCGACTACTGGATGTGGG
1 TATTCGAATACTGGATGTGGG
7149483 TATTCGAATACTGGATGTG
1 TATTCGAATACTGGATGTG
7149502 AGTCTATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.35
Consensus pattern (21 bp):
TATTCGAATACTGGATGTGGG
Found at i:7149993 original size:13 final size:13
Alignment explanation
Indices: 7149984--7150008 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7149974 AAATAAATTT
7149984 AATCTTTAAAATA
1 AATCTTTAAAATA
7149997 AATCTTTAAAAT
1 AATCTTTAAAAT
7150009 GGGTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
AATCTTTAAAATA
Found at i:7149996 original size:18 final size:17
Alignment explanation
Indices: 7149952--7149999 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
7149942 TTTAAATATG
7149952 AATTC-AAATAAATTTA
1 AATTCAAAATAAATTTA
7149968 AATTCAAAATAAATTTA
1 AATTCAAAATAAATTTA
* *
7149985 ATCTTTAAAATAAAT
1 A-ATTCAAAATAAAT
7150000 CTTTAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.18
17 12 0.43
18 11 0.39
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTCAAAATAAATTTA
Found at i:7150705 original size:200 final size:201
Alignment explanation
Indices: 7150354--7150778 Score: 602
Period size: 200 Copynumber: 2.1 Consensus size: 201
7150344 ATCTGGTCTA
* *
7150354 CTTCTCTGTATCTCATCAGGAAAATGACTGCAATCATCTGTTTTAATTCGCGTATCTAGATCTCC
1 CTTCTCTGTATCTCATCAGGAAGATGACTGCAATCACCTGTTTTAATTCGCGTATCTAGATCTCC
* * * * *
7150419 TCAAGAAGACGAATTTGGTCTACTTCTCTATGTCTCATCAGGAAGCTAACATTTTTATTGCTTCA
66 TCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACATATTTATTGCTTCA
* *
7150484 ACCTGCTTCTCAGTATCTCATCAGGAAACTGGGTTCGAAGATTTGCTCGCGTTGAGCATTGAGTT
131 ACCCGCTTCTCAGTATCTCATCAGGAAACTAGGTTCGAAGATTTGCTCGCGTTGAGCATTGAGTT
7150549 AGTATT
196 AGTATT
* * * * * *
7150555 CTTCTCTGTATCTCATCAGGAAGATGACTGC-CTCGCCTGTTTTGATTCGCTTCTCTGGATCTCC
1 CTTCTCTGTATCTCATCAGGAAGATGACTGCAATCACCTGTTTTAATTCGCGTATCTAGATCTCC
*
7150619 TCAGGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACCA-ATTTATTGCTTC
66 TCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAA-CATATTTATTGCTTC
* * * * *
7150683 GACCCGCTTCTCAGTGTCTCATCAGGAAGCTAGGTTCGAAGATTTGCTCGTGTTGAGCGTTGAGT
130 AACCCGCTTCTCAGTATCTCATCAGGAAACTAGGTTCGAAGATTTGCTCGCGTTGAGCATTGAGT
*
7150748 TGGTATT
195 TAGTATT
* * *
7150755 ATTCTCTGGATCTCCTCAGGAAGA
1 CTTCTCTGTATCTCATCAGGAAGA
7150779 CGAATTTGGT
Statistics
Matches: 198, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
200 166 0.84
201 32 0.16
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (201 bp):
CTTCTCTGTATCTCATCAGGAAGATGACTGCAATCACCTGTTTTAATTCGCGTATCTAGATCTCC
TCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACATATTTATTGCTTCA
ACCCGCTTCTCAGTATCTCATCAGGAAACTAGGTTCGAAGATTTGCTCGCGTTGAGCATTGAGTT
AGTATT
Found at i:7150794 original size:151 final size:151
Alignment explanation
Indices: 7150605--7150929 Score: 506
Period size: 151 Copynumber: 2.2 Consensus size: 151
7150595 TTTGATTCGC
7150605 TTCTCTGGATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACC
1 TTCTCTGGATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACC
*
7150670 AATTTATTGCTTCGACCCGCTTCTCAGTGTCTCATCAGGAAGCTAGGTTCGAAGATTTGCTCGTG
66 AATTTATTGCTTAGACCCGCTTCTCAGTGTCTCATCAGGAAGCTAGGTTCGAAGATTTGCTCGTG
*
7150735 TTGAGCGTTGAGTTGGTATTA
131 TTGAGCGCTGAGTTGGTATTA
* * * *
7150756 TTCTCTGGATCTCCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACC
1 TTCTCTGGATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACC
** * *
7150821 TTTTTATTGCTTAGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGTG
66 AATTTATTGCTTAGACCCGCTTCTCAGTGTCTCATCAGGAAGCTAGGTTCGAAGATTTGCTCGTG
* *
7150886 TTGAGCGCTGAGTTGGTGTTC
131 TTGAGCGCTGAGTTGGTATTA
* ** *
7150907 TTCACTATATCTCATCAGGAAGA
1 TTCTCTGGATCTCCTCAGGAAGA
7150930 TTACCGCCTT
Statistics
Matches: 158, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 158 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (151 bp):
TTCTCTGGATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTATATCTCATCAAGAAGCTAACC
AATTTATTGCTTAGACCCGCTTCTCAGTGTCTCATCAGGAAGCTAGGTTCGAAGATTTGCTCGTG
TTGAGCGCTGAGTTGGTATTA
Found at i:7163170 original size:30 final size:28
Alignment explanation
Indices: 7163136--7163229 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 28
7163126 CTTTCAAGGG
7163136 TAAAAGTGTATTTTTTGGTGAAATTGGGGT
1 TAAAA-TGTA-TTTTTGGTGAAATTGGGGT
* * *
7163166 TAAAAATGGAATTTT-G-GAAAGTTTGGGGG
1 T-AAAATGTATTTTTGGTGAAA--TTGGGGT
*
7163195 TAAAATGGTAATTTTTGGTGAAATCGGGGT
1 TAAAAT-GT-ATTTTTGGTGAAATTGGGGT
7163225 TAAAA
1 TAAAA
7163230 ATAGAATTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
27 4 0.08
28 6 0.12
29 12 0.24
30 19 0.38
31 5 0.10
32 4 0.08
ACGTcount: A:0.33, C:0.01, G:0.30, T:0.36
Consensus pattern (28 bp):
TAAAATGTATTTTTGGTGAAATTGGGGT
Found at i:7163180 original size:29 final size:29
Alignment explanation
Indices: 7163148--7163241 Score: 104
Period size: 29 Copynumber: 3.2 Consensus size: 29
7163138 AAAGTGTATT
7163148 TTTTGGTGAAATTGGGGTTAAAAATGGAA
1 TTTTGGTGAAATTGGGGTTAAAAATGGAA
*
7163177 TTTT-G-GAAAGTTTGGGGGT-AAAATGGTAA
1 TTTTGGTGAAA--TTGGGGTTAAAAATGG-AA
* *
7163206 TTTTTGGTGAAATCGGGGTTAAAAATAGAA
1 -TTTTGGTGAAATTGGGGTTAAAAATGGAA
7163236 TTTTGG
1 TTTTGG
7163242 AAGGTTTTGG
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
27 4 0.07
28 8 0.15
29 19 0.35
30 12 0.22
31 7 0.13
32 4 0.07
ACGTcount: A:0.32, C:0.01, G:0.31, T:0.36
Consensus pattern (29 bp):
TTTTGGTGAAATTGGGGTTAAAAATGGAA
Found at i:7163199 original size:59 final size:60
Alignment explanation
Indices: 7163133--7163273 Score: 198
Period size: 59 Copynumber: 2.4 Consensus size: 60
7163123 TAACTTTCAA
* * *
7163133 GGGTAAAA-GTGTATTTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAG-TTTGG
1 GGGTAAAATG-GTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTTGG
*
7163192 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAGGTTTTGG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTTGG
* *
7163252 GGGTAATATAGTAA-TTTTGGTG
1 GGGTAAAATGGTAATTTTTGGTG
7163274 GGGTCAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 56 0.76
60 18 0.24
ACGTcount: A:0.30, C:0.01, G:0.32, T:0.37
Consensus pattern (60 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTTTGG
Found at i:7163238 original size:30 final size:30
Alignment explanation
Indices: 7163147--7163239 Score: 104
Period size: 30 Copynumber: 3.1 Consensus size: 30
7163137 AAAAGTGTAT
7163147 TTTTTGGTGAAATTGGGGTTAAAAATGGAA
1 TTTTTGGTGAAATTGGGGTTAAAAATGGAA
*
7163177 -TTTT-G-GAAAGTTTGGGGGT-AAAATGGTAA
1 TTTTTGGTGAAA--TTGGGGTTAAAAATGG-AA
* *
7163206 TTTTTGGTGAAATCGGGGTTAAAAATAGAA
1 TTTTTGGTGAAATTGGGGTTAAAAATGGAA
7163236 TTTT
1 TTTT
7163240 GGAAGGTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
27 4 0.08
28 8 0.15
29 13 0.25
30 16 0.31
31 7 0.13
32 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.29, T:0.38
Consensus pattern (30 bp):
TTTTTGGTGAAATTGGGGTTAAAAATGGAA
Found at i:7164341 original size:10 final size:10
Alignment explanation
Indices: 7164324--7164357 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7164314 CTTTTTTTAA
7164324 TAATTATTAT
1 TAATTATTAT
*
7164334 TTATTATTAT
1 TAATTATTAT
*
7164344 TAATTAATAT
1 TAATTATTAT
7164354 TAAT
1 TAAT
7164358 GAATTTGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATTATTAT
Found at i:7164625 original size:21 final size:21
Alignment explanation
Indices: 7164599--7164643 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7164589 ACTTTGAGTC
* *
7164599 TATTCGACTACTAGATGTGGG
1 TATTCGAATACTAGATGTGAG
*
7164620 TATTCGAATACTGGATGTGAG
1 TATTCGAATACTAGATGTGAG
7164641 TAT
1 TAT
7164644 ATTCTGCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.36
Consensus pattern (21 bp):
TATTCGAATACTAGATGTGAG
Found at i:7165095 original size:17 final size:18
Alignment explanation
Indices: 7165073--7165112 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7165063 TATTAAGTCT
7165073 TAAATTTAA-ATTCAAAA
1 TAAATTTAATATTCAAAA
* *
7165090 TAAATTTAATCTTTAAAA
1 TAAATTTAATATTCAAAA
7165108 TAAAT
1 TAAAT
7165113 CTTTAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAATTTAATATTCAAAA
Found at i:7165106 original size:13 final size:13
Alignment explanation
Indices: 7165097--7165121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7165087 AAATAAATTT
7165097 AATCTTTAAAATA
1 AATCTTTAAAATA
7165110 AATCTTTAAAAT
1 AATCTTTAAAAT
7165122 GGGTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
AATCTTTAAAATA
Found at i:7165792 original size:9 final size:10
Alignment explanation
Indices: 7165777--7165826 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
7165767 GGAGAAATAA
7165777 ATTTTTA-AT
1 ATTTTTATAT
*
7165786 TTTTTTATAT
1 ATTTTTATAT
*
7165796 ATTTTTAGA-
1 ATTTTTATAT
7165805 ATTTTTATAT
1 ATTTTTATAT
* *
7165815 TTTTTTAAAT
1 ATTTTTATAT
7165825 AT
1 AT
7165827 AAATTTTGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
9 14 0.44
10 18 0.56
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:7165801 original size:19 final size:18
Alignment explanation
Indices: 7165777--7165861 Score: 61
Period size: 19 Copynumber: 4.8 Consensus size: 18
7165767 GGAGAAATAA
*
7165777 ATTTTTAATTTTTTTATAT
1 ATTTTTAA-ATTTTTATAT
7165796 ATTTTTAGAATTTTTATAT
1 ATTTTTA-AATTTTTATAT
* *
7165815 TTTTTTAAA----TATAA
1 ATTTTTAAATTTTTATAT
* *
7165829 ATTTTGAAATTTTTATAA
1 ATTTTTAAATTTTTATAT
*
7165847 ATATTTTGAATTTTT
1 AT-TTTTAAATTTTT
7165862 TTGTAATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
14 11 0.21
18 9 0.17
19 32 0.60
20 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (18 bp):
ATTTTTAAATTTTTATAT
Found at i:7165840 original size:24 final size:24
Alignment explanation
Indices: 7165804--7165850 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7165794 ATATTTTTAG
* * *
7165804 AATTTTTATATTTTTTTAAATATA
1 AATTTTGAAATTTTTATAAATATA
7165828 AATTTTGAAATTTTTATAAATAT
1 AATTTTGAAATTTTTATAAATAT
7165851 TTTGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
AATTTTGAAATTTTTATAAATATA
Found at i:7169090 original size:11 final size:12
Alignment explanation
Indices: 7169076--7169144 Score: 63
Period size: 11 Copynumber: 5.8 Consensus size: 12
7169066 TATTTCTAAG
7169076 TTTAAATTT-AA
1 TTTAAATTTAAA
7169087 TTTAAATTTAAA
1 TTTAAATTTAAA
* **
7169099 TTTAAAATTCATT
1 TTT-AAATTTAAA
7169112 TTTAAATTTAAA
1 TTTAAATTTAAA
*
7169124 TTT--GTTCTAAA
1 TTTAAATT-TAAA
7169135 TTTAAATTTA
1 TTTAAATTTA
7169145 GCTTAAATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
10 2 0.04
11 16 0.36
12 16 0.36
13 11 0.24
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:7169094 original size:6 final size:6
Alignment explanation
Indices: 7169076--7169144 Score: 63
Period size: 6 Copynumber: 11.7 Consensus size: 6
7169066 TATTTCTAAG
* **
7169076 TTTAAA TTT-AA TTTAAA TTTAAA TTTAAAA TTCATT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA
*
7169124 TTT--G TTCTAAA TTTAAA TTTA
1 TTTAAA TT-TAAA TTTAAA TTTA
7169145 GCTTAAATAT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
4 2 0.04
5 6 0.12
6 35 0.70
7 7 0.14
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Done.