Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 25 of 125
Found at i:7373321 original size:31 final size:30
Alignment explanation
Indices: 7373281--7373362 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 30
7373271 AAATTTTAAA
* * *
7373281 TTAATAATGATAAAATTATATTTTGATCTTC
1 TTAAAAATGATAAAATTATAATTTAAT-TTC
* * *
7373312 TTAAAAATGATTAAATTTTAATTTAATTTT
1 TTAAAAATGATAAAATTATAATTTAATTTC
* *
7373342 TTAAAAATTATAAAAATATAA
1 TTAAAAATGATAAAATTATAA
7373363 AGATTATTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
30 19 0.46
31 22 0.54
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (30 bp):
TTAAAAATGATAAAATTATAATTTAATTTC
Found at i:7373368 original size:17 final size:17
Alignment explanation
Indices: 7373343--7373376 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7373333 TTTAATTTTT
7373343 TAAAAATTATAAAAATA
1 TAAAAATTATAAAAATA
* *
7373360 TAAAGATTATTAAAATA
1 TAAAAATTATAAAAATA
7373377 GTGAATTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAAATTATAAAAATA
Found at i:7373703 original size:26 final size:25
Alignment explanation
Indices: 7373673--7373726 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
7373663 TAAAAACAAT
7373673 AACCACAAAAAATATGGACAAAATAA
1 AACCAC-AAAAATATGGACAAAATAA
* * *
7373699 AACCACTAAATTATGGACAACATAA
1 AACCACAAAAATATGGACAAAATAA
7373724 AAC
1 AAC
7373727 TATGAAACTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.59, C:0.19, G:0.07, T:0.15
Consensus pattern (25 bp):
AACCACAAAAATATGGACAAAATAA
Found at i:7377495 original size:22 final size:22
Alignment explanation
Indices: 7377469--7377526 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
7377459 CCTGCAACTT
7377469 CTACCGATACTTCAAAAACAAA
1 CTACCGATACTTCAAAAACAAA
7377491 CTACCGATACTTCAAAAACAAA
1 CTACCGATACTTCAAAAACAAA
*
7377513 CTACCGAAACTTCA
1 CTACCGATACTTCA
7377527 TACAACTACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.47, C:0.29, G:0.05, T:0.19
Consensus pattern (22 bp):
CTACCGATACTTCAAAAACAAA
Found at i:7380372 original size:176 final size:176
Alignment explanation
Indices: 7380078--7380429 Score: 596
Period size: 176 Copynumber: 2.0 Consensus size: 176
7380068 ATAACATGTG
* *
7380078 CCAAGCAAAAAGACCAAAAGGGTATCTGTATGCCTAGGAAGAGACTAGAAGGGTGAATTAGGTGG
1 CCAAGCAAAAAGACCAAAAGGGTATCTGTATGCCTAGGAAGAGACTAGAAAGGTGAATTAGATGG
* *
7380143 TAATCCATAATGAAGATGAACCGAGAGGGTAGTCATAGCTAAGGGTGATAAATAATTTAATTGAT
66 TAATCCATAATAAAGATGAACCGAGAGGATAGTCATAGCTAAGGGTGATAAATAATTTAATTGAT
*
7380208 GATAGTTAATTATTTAATTAAATAATCAGAGATTTAATTGATCATA
131 GATAGTTAATTATTTAATTAAATAATCAGAGATTTAATCGATCATA
* *
7380254 CCAAGCAGAAAGACCAAAAGGGTATCTGTATGCCTAGGAAGAGACTAGAAAGGTGACTTAGATGG
1 CCAAGCAAAAAGACCAAAAGGGTATCTGTATGCCTAGGAAGAGACTAGAAAGGTGAATTAGATGG
* **
7380319 TAATCCTTAATAAAGATGAACCGAGAGGATAGTTGTAGCTAAGGGTGATAAATAATTTAATTGAT
66 TAATCCATAATAAAGATGAACCGAGAGGATAGTCATAGCTAAGGGTGATAAATAATTTAATTGAT
* *
7380384 GATAGTTAATTATTTAATTAAATAATTAGGGATTTAATCGATCATA
131 GATAGTTAATTATTTAATTAAATAATCAGAGATTTAATCGATCATA
7380430 GGTTAGAGGC
Statistics
Matches: 164, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
176 164 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (176 bp):
CCAAGCAAAAAGACCAAAAGGGTATCTGTATGCCTAGGAAGAGACTAGAAAGGTGAATTAGATGG
TAATCCATAATAAAGATGAACCGAGAGGATAGTCATAGCTAAGGGTGATAAATAATTTAATTGAT
GATAGTTAATTATTTAATTAAATAATCAGAGATTTAATCGATCATA
Found at i:7383663 original size:27 final size:28
Alignment explanation
Indices: 7383615--7383691 Score: 95
Period size: 27 Copynumber: 2.7 Consensus size: 28
7383605 CATATGATTT
*
7383615 TAAAATTATTAAAATATTTTTTTAAAA-ATA
1 TAAAATTATT-AAATA-ATTTTTAAAATA-A
*
7383645 TAAAATTATT-AATAATTTTTGAAATAA
1 TAAAATTATTAAATAATTTTTAAAATAA
7383672 TAAAATTATTAAATAATTTT
1 TAAAATTATTAAATAATTTT
7383692 AATTTTAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 19 0.44
28 14 0.33
30 10 0.23
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (28 bp):
TAAAATTATTAAATAATTTTTAAAATAA
Found at i:7383686 original size:28 final size:29
Alignment explanation
Indices: 7383615--7383691 Score: 104
Period size: 28 Copynumber: 2.7 Consensus size: 29
7383605 CATATGATTT
* *
7383615 TAAAATTATTAAAATATTTTTTTAAAAATA
1 TAAAATTATT-AAATAATTTTTGAAAAATA
*
7383645 TAAAATTATT-AATAATTTTTGAAATA-A
1 TAAAATTATTAAATAATTTTTGAAAAATA
7383672 TAAAATTATTAAATAATTTT
1 TAAAATTATTAAATAATTTT
7383692 AATTTTAATC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 11 0.26
28 22 0.51
30 10 0.23
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (29 bp):
TAAAATTATTAAATAATTTTTGAAAAATA
Found at i:7392623 original size:29 final size:29
Alignment explanation
Indices: 7392591--7392648 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
7392581 GTGATAAAAA
*
7392591 ATCCTCTTGTAGATAATCTTCATTTATGG
1 ATCCACTTGTAGATAATCTTCATTTATGG
7392620 ATCCACTTGTAGATAATCTTCATTTATGG
1 ATCCACTTGTAGATAATCTTCATTTATGG
7392649 TGAAAATAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (29 bp):
ATCCACTTGTAGATAATCTTCATTTATGG
Found at i:7397875 original size:15 final size:15
Alignment explanation
Indices: 7397846--7397875 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7397836 TAAGCAACAC
*
7397846 GAAAAGAAACAAAAA
1 GAAAAGAAAAAAAAA
7397861 GAAAAGAAAAAAAAA
1 GAAAAGAAAAAAAAA
7397876 ATTGCCAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.03, G:0.13, T:0.00
Consensus pattern (15 bp):
GAAAAGAAAAAAAAA
Found at i:7405726 original size:92 final size:92
Alignment explanation
Indices: 7405630--7405802 Score: 217
Period size: 92 Copynumber: 1.9 Consensus size: 92
7405620 ATGAAAGCGG
* *
7405630 CCATCGTCTTCATCGAAGCCCAAAAAGGAGATTGGTAAA-CTCGAA-AAGAGCTTGAAAAGGTTA
1 CCATCGTCTTCATCGAAGCCC-AAAAGGAGATCGGTAAACCT-GAAGAAGAGATTGAAAA-GTTA
7405693 T-AGAAAGCTATAAACTTCAACAAAAATGC
63 TCAGAAAGCTATAAACTTCAACAAAAATGC
* * * * *
7405722 CCATCGTCTTCATGGGAGCTCGAAAGGAGATCGGTAAACCTGAAGAAGAGATTGAAAAGTTGTCA
1 CCATCGTCTTCATCGAAGCCCAAAAGGAGATCGGTAAACCTGAAGAAGAGATTGAAAAGTTATCA
* *
7405787 TAAAGCTATAATCTTC
66 GAAAGCTATAAACTTC
7405803 TACTGGAGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
91 22 0.32
92 47 0.68
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (92 bp):
CCATCGTCTTCATCGAAGCCCAAAAGGAGATCGGTAAACCTGAAGAAGAGATTGAAAAGTTATCA
GAAAGCTATAAACTTCAACAAAAATGC
Found at i:7405963 original size:16 final size:16
Alignment explanation
Indices: 7405942--7405973 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7405932 AGCAACAAAA
7405942 ATGAATGAAAAAGTGC
1 ATGAATGAAAAAGTGC
7405958 ATGAATGAAAAAGTGC
1 ATGAATGAAAAAGTGC
7405974 TTTGGACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (16 bp):
ATGAATGAAAAAGTGC
Found at i:7408350 original size:6 final size:6
Alignment explanation
Indices: 7408339--7408371 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7408329 ACATACATAC
*
7408339 ATATAG ATATAG ATATAG ATATAG GTATAG ATA
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATA
7408372 CAGGCATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (6 bp):
ATATAG
Found at i:7412807 original size:28 final size:28
Alignment explanation
Indices: 7412750--7412808 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
7412740 CTTGGGTTCG
* * **
7412750 AATTTGGGATTCAGTGTTCAAAATTCAA
1 AATTTGAGATTCAGGGTTCAAAATAAAA
*
7412778 AATTTGAGATTCAGGGTTCAAAGTAAAA
1 AATTTGAGATTCAGGGTTCAAAATAAAA
7412806 AAT
1 AAT
7412809 ATCAAAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (28 bp):
AATTTGAGATTCAGGGTTCAAAATAAAA
Found at i:7415924 original size:32 final size:32
Alignment explanation
Indices: 7415876--7415952 Score: 118
Period size: 32 Copynumber: 2.4 Consensus size: 32
7415866 TTAATATATC
7415876 ATTTGGTATCTAAACTTGATATTTTTTTCCTA
1 ATTTGGTATCTAAACTTGATATTTTTTTCCTA
* * *
7415908 ATTTGGTATTTGAACTTGATATTTTTTTCTTA
1 ATTTGGTATCTAAACTTGATATTTTTTTCCTA
*
7415940 ATTTGGTACCTAA
1 ATTTGGTATCTAA
7415953 GATTTTTCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (32 bp):
ATTTGGTATCTAAACTTGATATTTTTTTCCTA
Found at i:7416542 original size:23 final size:23
Alignment explanation
Indices: 7416494--7416543 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7416484 TTGTAATCCA
*
7416494 AAAAACATTAAATTCTAAGAAGT
1 AAAAACATTAAATTCTAAGAAAT
*
7416517 AAAAAGATTAAATTCATAA-AAAT
1 AAAAACATTAAATTC-TAAGAAAT
7416540 AAAA
1 AAAA
7416544 GTCAAGAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (23 bp):
AAAAACATTAAATTCTAAGAAAT
Found at i:7432551 original size:2 final size:2
Alignment explanation
Indices: 7432544--7432584 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7432534 CCTTTCCTGC
7432544 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
7432585 AAATGGCAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:7436698 original size:12 final size:12
Alignment explanation
Indices: 7436668--7436706 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7436658 ACCTATTCTG
*
7436668 TATAGTGTATATA
1 TATA-TGTATGTA
7436681 TATATGTATGTA
1 TATATGTATGTA
*
7436693 TGTATGTATGTA
1 TATATGTATGTA
7436705 TA
1 TA
7436707 CACTGCTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (12 bp):
TATATGTATGTA
Found at i:7441052 original size:18 final size:18
Alignment explanation
Indices: 7441029--7441064 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7441019 TAGGCTATTA
*
7441029 CTAATTCGGTTAATTTGG
1 CTAATTCGGATAATTTGG
7441047 CTAATTCGGATAATTTGG
1 CTAATTCGGATAATTTGG
7441065 TAAAATGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.11, G:0.22, T:0.42
Consensus pattern (18 bp):
CTAATTCGGATAATTTGG
Found at i:7442324 original size:11 final size:11
Alignment explanation
Indices: 7442301--7442336 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
7442291 CTCATACATG
7442301 TAAAACCCTAT
1 TAAAACCCTAT
* *
7442312 TACAACCCCAT
1 TAAAACCCTAT
7442323 TAAAACCCTAT
1 TAAAACCCTAT
7442334 TAA
1 TAA
7442337 TTTTAATTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAACCCTAT
Found at i:7443558 original size:61 final size:62
Alignment explanation
Indices: 7443443--7443565 Score: 187
Period size: 62 Copynumber: 2.0 Consensus size: 62
7443433 CAATTAAACT
* * *
7443443 AAAATTTGAAGATTAAGAGTCAAAATGATAAAAGAAGTAAACATTAAAAGTTAAATTTATTA
1 AAAATTTGAAAATTAAGAGTCAAAATGATAAAAGAAATAAACATTAAAAATTAAATTTATTA
*
7443505 AAAATTTGAAAATTAAG-GATTAAAATGATAAAA-AAATAAACATTAAAAATTAAATTTATTA
1 AAAATTTGAAAATTAAGAG-TCAAAATGATAAAAGAAATAAACATTAAAAATTAAATTTATTA
7443566 TTATACCTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
61 27 0.48
62 29 0.52
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (62 bp):
AAAATTTGAAAATTAAGAGTCAAAATGATAAAAGAAATAAACATTAAAAATTAAATTTATTA
Found at i:7445076 original size:21 final size:20
Alignment explanation
Indices: 7445040--7445081 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
7445030 GATTCGTGGG
7445040 TTAGAGTTAGGATTTAAGAT
1 TTAGAGTTAGGATTTAAGAT
*
7445060 TTAGAGTTTAGGGTTTAAGAT
1 TTAGAG-TTAGGATTTAAGAT
7445081 T
1 T
7445082 AAGGTGTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (20 bp):
TTAGAGTTAGGATTTAAGAT
Found at i:7447557 original size:11 final size:11
Alignment explanation
Indices: 7447526--7447567 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7447516 CCTAACTTGG
7447526 ATTTTAAATTA
1 ATTTTAAATTA
* *
7447537 AGTTTGAATTA
1 ATTTTAAATTA
*
7447548 ATTTTAAATTT
1 ATTTTAAATTA
7447559 A-TTTAAATT
1 ATTTTAAATT
7447568 TAAATTTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
ATTTTAAATTA
Found at i:7447567 original size:17 final size:17
Alignment explanation
Indices: 7447528--7447589 Score: 74
Period size: 17 Copynumber: 3.8 Consensus size: 17
7447518 TAACTTGGAT
*
7447528 TTTAAA-TTAAGTTTGA
1 TTTAAATTTAAATTTGA
* *
7447544 ATTAATTTTAAATTT-A
1 TTTAAATTTAAATTTGA
*
7447560 TTTAAATTTAAATTTGT
1 TTTAAATTTAAATTTGA
7447577 TTTAAATTTAAAT
1 TTTAAATTTAAAT
7447590 ACATTTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
16 18 0.47
17 20 0.53
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTAAATTTGA
Found at i:7447570 original size:22 final size:22
Alignment explanation
Indices: 7447526--7447567 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7447516 CCTAACTTGG
*
7447526 ATTTTAAATTAAGTTTGAATTA
1 ATTTTAAATTAAGTTTAAATTA
*
7447548 ATTTTAAATTTA-TTTAAATT
1 ATTTTAAATTAAGTTTAAATT
7447568 TAAATTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTTTAAATTAAGTTTAAATTA
Found at i:7447573 original size:27 final size:27
Alignment explanation
Indices: 7447532--7447623 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
7447522 TTGGATTTTA
* *
7447532 AATTAAGTTTGAATTAATTTTAAATTT
1 AATTAAATTTAAATTAATTTTAAATTT
* **
7447559 ATTTAAATTTAAATTTGTTTTAAATTT
1 AATTAAATTTAAATTAATTTTAAATTT
* * * * *
7447586 AAATACATTTAAAATAATTTGAAACTTAA
1 AATTAAATTTAAATTAATTTTAAA-TT-T
7447615 AATTAAATT
1 AATTAAATT
7447624 AATAATGTCC
Statistics
Matches: 48, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
27 39 0.81
28 2 0.04
29 7 0.15
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (27 bp):
AATTAAATTTAAATTAATTTTAAATTT
Found at i:7447598 original size:16 final size:16
Alignment explanation
Indices: 7447545--7447598 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7447535 TAAGTTTGAA
* *
7447545 TTAATTTTAAATTTAT
1 TTAAATTTAAATTCAT
**
7447561 TTAAATTTAAATTTGTT
1 TTAAATTTAAA-TTCAT
*
7447578 TTAAATTTAAATACAT
1 TTAAATTTAAATTCAT
7447594 TTAAA
1 TTAAA
7447599 ATAATTTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
TTAAATTTAAATTCAT
Found at i:7448388 original size:15 final size:15
Alignment explanation
Indices: 7448368--7448401 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7448358 TAATATTTTA
*
7448368 AATATTATTAATAAT
1 AATATTAGTAATAAT
7448383 AATATTAGTAATAAT
1 AATATTAGTAATAAT
7448398 AATA
1 AATA
7448402 ATAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
AATATTAGTAATAAT
Found at i:7448420 original size:20 final size:21
Alignment explanation
Indices: 7448395--7448433 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
7448385 TATTAGTAAT
7448395 AATAATAATAAAT-TTTTTTA
1 AATAATAATAAATGTTTTTTA
7448415 AATAATAATAAATGTTTTT
1 AATAATAATAAATGTTTTT
7448434 GGTAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
AATAATAATAAATGTTTTTTA
Found at i:7449450 original size:42 final size:42
Alignment explanation
Indices: 7449403--7449486 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
7449393 TTCCAAAATT
* *
7449403 CCATTTTTGACTCCGATTTCACCCAAAATTACCATTTTACCC
1 CCATTTTTGACCCCGATTTCACCCAAAATTACCAATTTACCC
*
7449445 CCATTTTTTACCCCGATTTCACCCAAAATTACCAATTTACCC
1 CCATTTTTGACCCCGATTTCACCCAAAATTACCAATTTACCC
7449487 TCAAACTTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.35, G:0.04, T:0.35
Consensus pattern (42 bp):
CCATTTTTGACCCCGATTTCACCCAAAATTACCAATTTACCC
Found at i:7449532 original size:30 final size:31
Alignment explanation
Indices: 7449498--7449659 Score: 99
Period size: 30 Copynumber: 5.5 Consensus size: 31
7449488 CAAACTTTCT
*
7449498 AAAATT-CCATTTTTAACTTTGATTTTACCC
1 AAAATTACCATTTTTAACCTTGATTTTACCC
* ** *
7449528 AAAATTACCA-TTTTACCCCTAAACTTT--CC
1 AAAATTACCATTTTTA-ACCTTGATTTTACCC
* *
7449557 AAAATT-CCATTTTTGACCTTGATTTCACCC
1 AAAATTACCATTTTTAACCTTGATTTTACCC
* *** *
7449587 AAAATTACCA-TTTTACCCAAAAACTTT--CC
1 AAAATTACCATTTTTAACC-TTGATTTTACCC
* * * *
7449616 AAAATT-CCATTTTTAACCCTGGTTTCACCA
1 AAAATTACCATTTTTAACCTTGATTTTACCC
7449646 AAAATTACCATTTT
1 AAAATTACCATTTT
7449660 ACCCTCAAAC
Statistics
Matches: 95, Mismatches: 26, Indels: 21
0.67 0.18 0.15
Matches are distributed among these distances:
28 14 0.15
29 27 0.28
30 32 0.34
31 22 0.23
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (31 bp):
AAAATTACCATTTTTAACCTTGATTTTACCC
Found at i:7449537 original size:59 final size:59
Alignment explanation
Indices: 7449445--7449696 Score: 353
Period size: 59 Copynumber: 4.3 Consensus size: 59
7449435 CATTTTACCC
* ** * *
7449445 CCATTTTTTACCCCGATTTCACCCAAAATTACCAATTTACCCTCAAACTTTCTAAAATT
1 CCATTTTTAACCTTGATTTCACCCAAAATTACCATTTTACCCTCAAACTTTCCAAAATT
* *
7449504 CCATTTTTAACTTTGATTTTACCCAAAATTACCATTTTACCC-CTAAACTTTCCAAAATT
1 CCATTTTTAACCTTGATTTCACCCAAAATTACCATTTTACCCTC-AAACTTTCCAAAATT
* **
7449563 CCATTTTTGACCTTGATTTCACCCAAAATTACCATTTTACCCAAAAACTTTCCAAAATT
1 CCATTTTTAACCTTGATTTCACCCAAAATTACCATTTTACCCTCAAACTTTCCAAAATT
* * *
7449622 CCATTTTTAACCCTGGTTTCACCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATT
1 CCATTTTTAACCTTGATTTCACCCAAAATTACCATTTTACCCTCAAACTTTCCAAAATT
* *
7449681 CTATTTTTAACATTGA
1 CCATTTTTAACCTTGA
7449697 ATTTTCTCGA
Statistics
Matches: 170, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
58 1 0.01
59 169 0.99
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.38
Consensus pattern (59 bp):
CCATTTTTAACCTTGATTTCACCCAAAATTACCATTTTACCCTCAAACTTTCCAAAATT
Found at i:7449570 original size:29 final size:28
Alignment explanation
Indices: 7449467--7449680 Score: 118
Period size: 29 Copynumber: 7.3 Consensus size: 28
7449457 CCGATTTCAC
*
7449467 CCAAAATTACCAATTTACCCTCAAACTTT
1 CCAAAATTACCATTTTACCCT-AAACTTT
* * * ** *
7449496 CTAAAATT-CCATTTTTAACTTTGATTTT
1 CCAAAATTACCA-TTTTACCCTAAACTTT
7449524 ACCCAAAATTACCATTTTACCCCTAAACTTT
1 --CCAAAATTACCATTTTA-CCCTAAACTTT
**
7449555 CCAAAATT-CCATTTTTGA-CCTTGA-TTT
1 CCAAAATTACCA-TTTT-ACCCTAAACTTT
*
7449582 CACCCAAAATTACCATTTTACCCAAAAACTTT
1 ---CCAAAATTACCATTTTACCC-TAAACTTT
**
7449614 CCAAAATT-CCATTTTTAACCCT--GGTTT
1 CCAAAATTACCA-TTTT-ACCCTAAACTTT
7449641 CACCAAAAATTACCATTTTACCCTCAAACTTT
1 --CC-AAAATTACCATTTTACCCT-AAACTTT
7449673 CCAAAATT
1 CCAAAATT
7449681 CTATTTTTAA
Statistics
Matches: 139, Mismatches: 23, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
27 6 0.04
28 17 0.12
29 51 0.37
30 43 0.31
31 16 0.12
32 6 0.04
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.36
Consensus pattern (28 bp):
CCAAAATTACCATTTTACCCTAAACTTT
Found at i:7451917 original size:17 final size:17
Alignment explanation
Indices: 7451869--7451939 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
7451859 GACCGGGCTC
*
7451869 AATTTGGATTTTAATTTA
1 AATTT-GATTTAAATTTA
* * *
7451887 AGTTTGAATTAATTTTA
1 AATTTGATTTAAATTTA
7451904 AATTT-ATTTAAATTTA
1 AATTTGATTTAAATTTA
*
7451920 AATTTGTTTTAAATTTA
1 AATTTGATTTAAATTTA
7451937 AAT
1 AAT
7451940 ACATTTAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
16 14 0.32
17 26 0.59
18 4 0.09
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
AATTTGATTTAAATTTA
Found at i:7451918 original size:33 final size:33
Alignment explanation
Indices: 7451876--7451948 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
7451866 CTCAATTTGG
* * * **
7451876 ATTTTAATTTAAGTTTGAATTAATTTTAAATTT
1 ATTTAAATTTAAATTTGAATTAAATTTAAATAC
**
7451909 ATTTAAATTTAAATTTGTTTTAAATTTAAATAC
1 ATTTAAATTTAAATTTGAATTAAATTTAAATAC
7451942 ATTTAAA
1 ATTTAAA
7451949 ATAATTTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (33 bp):
ATTTAAATTTAAATTTGAATTAAATTTAAATAC
Found at i:7451923 original size:27 final size:27
Alignment explanation
Indices: 7451882--7451955 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
7451872 TTGGATTTTA
* *
7451882 ATTTAAGTTTGAATTAATTTTAAATTT
1 ATTTAAATTTAAATTAATTTTAAATTT
**
7451909 ATTTAAATTTAAATTTGTTTTAAATTT
1 ATTTAAATTTAAATTAATTTTAAATTT
** * *
7451936 AAATACATTTAAAATAATTT
1 ATTTAAATTTAAATTAATTT
7451956 AAAACTTAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (27 bp):
ATTTAAATTTAAATTAATTTTAAATTT
Found at i:7451948 original size:16 final size:16
Alignment explanation
Indices: 7451895--7451948 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7451885 TAAGTTTGAA
* *
7451895 TTAATTTTAAATTTAT
1 TTAAATTTAAATTCAT
**
7451911 TTAAATTTAAATTTGTT
1 TTAAATTTAAA-TTCAT
*
7451928 TTAAATTTAAATACAT
1 TTAAATTTAAATTCAT
7451944 TTAAA
1 TTAAA
7451949 ATAATTTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (16 bp):
TTAAATTTAAATTCAT
Found at i:7454041 original size:176 final size:176
Alignment explanation
Indices: 7453747--7454233 Score: 742
Period size: 176 Copynumber: 2.8 Consensus size: 176
7453737 CTTGAACTGT
* * * * *
7453747 CCAAAAATTACCATTTGACCCTCGAACTTTCTAAAATCTCATTTTTAACCCCGATTTCATCAAAA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCAAAAATCCCATTTTTAACCTCGATTTCACCAAAA
7453812 ATTACCATTTTACCCCCGAACTCTCCAAAATCCCATTTTTAACCCCGATTTTACCAAAAATTACC
66 ATTACCATTTTACCCCCGAACTCTCCAAAAT-CCATTTTTAACCCCGATTTTACCAAAAATTACC
* * *
7453877 ATTTTACCCTCGAACTTTCTAAAATCCCA-TTTTAACCCCGATTTCA
130 ATTTTACCCTCGAACTTTCCAAAATCCAATTTTTAACCCCAATTTCA
* *
7453923 CCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCATTTTTAACCTCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCAAAAATCCCATTTTTAACCTCGATTTCACCAAAA
* *
7453988 ATTACCATTTTACCCTCGAACTCTCCAAAATACCATTTTTAACCCTGATTTTACCAAAAATTACC
66 ATTACCATTTTACCCCCGAACTCTCCAAAAT-CCATTTTTAACCCCGATTTTACCAAAAATTACC
* * *
7454053 ATTTTACCCTCGAACTTTCCAAAATCTAATTTTTAACCCTAATTTTA
130 ATTTTACCCTCGAACTTTCCAAAATCCAATTTTTAACCCCAATTTCA
* * * *
7454100 CCAAAAAATACCATTTTACCCTTGAACTTTCCAAAATCCCATTTTTAACCTCGATTTGACCAAAA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCAAAAATCCCATTTTTAACCTCGATTTCACCAAAA
* * *
7454165 ATTACCATTTTACCCCCAAACTTTCCAAAATCTCATTTTTAACCCCGATTTTACCAAAAATTATC
66 ATTACCATTTTACCCCCGAACTCTCCAAAATC-CATTTTTAACCCCGATTTTACCAAAAATTACC
7454230 ATTT
130 ATTT
7454234 CGCCCCCGGG
Statistics
Matches: 282, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
176 147 0.52
177 135 0.48
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (176 bp):
CCAAAAATTACCATTTTACCCTCGAACTTTCAAAAATCCCATTTTTAACCTCGATTTCACCAAAA
ATTACCATTTTACCCCCGAACTCTCCAAAATCCATTTTTAACCCCGATTTTACCAAAAATTACCA
TTTTACCCTCGAACTTTCCAAAATCCAATTTTTAACCCCAATTTCA
Found at i:7454086 original size:29 final size:29
Alignment explanation
Indices: 7453995--7454205 Score: 86
Period size: 29 Copynumber: 7.2 Consensus size: 29
7453985 AAAATTACCA
* *
7453995 TTTTACCCTCGAACTCTCCAAAATAC-CAT
1 TTTTACCCTCGAACTTTCCAAAAT-CTAAT
*
7454024 TTTTAACCCT-G-ATTTTACCAAAAAT-TACCA-
1 TTTT-ACCCTCGAACTTT-CC-AAAATCTA--AT
7454054 TTTTACCCTCGAACTTTCCAAAATCTAAT
1 TTTTACCCTCGAACTTTCCAAAATCTAAT
* **
7454083 TTTTAACCCT--AATTTTACCAAAAAATACCA-
1 TTTT-ACCCTCGAACTTT-CCAAAATCTA--AT
* **
7454113 TTTTACCCTTGAACTTTCCAAAATCCCAT
1 TTTTACCCTCGAACTTTCCAAAATCTAAT
*
7454142 TTTTAACCTCG-A-TTTGACCAAAAAT-TACCA-
1 TTTTACCCTCGAACTTT--CC-AAAATCTA--AT
* * *
7454172 TTTTACCCCCAAACTTTCCAAAATCTCAT
1 TTTTACCCTCGAACTTTCCAAAATCTAAT
7454201 TTTTA
1 TTTTA
7454206 ACCCCGATTT
Statistics
Matches: 136, Mismatches: 20, Indels: 52
0.65 0.10 0.25
Matches are distributed among these distances:
27 3 0.02
28 12 0.09
29 55 0.40
30 50 0.37
31 13 0.10
32 3 0.02
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (29 bp):
TTTTACCCTCGAACTTTCCAAAATCTAAT
Found at i:7454240 original size:59 final size:59
Alignment explanation
Indices: 7453747--7454233 Score: 706
Period size: 59 Copynumber: 8.3 Consensus size: 59
7453737 CTTGAACTGT
* * * *
7453747 CCAAAAATTACCATTTGACCCTCGAACTTTCTAAAATCTCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* * *
7453806 TCAAAAATTACCATTTTACCCCCGAACTCTCCAAAATCCCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* *
7453865 CCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATCCCA-TTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* * * * *
7453923 CCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* * *
7453982 CCAAAAATTACCATTTTACCCTCGAACTCTCCAAAATACCATTTTTAACCCTGATTTTA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
** **
7454041 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCTAATTTTTAACCCTAATTTTA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* * * *
7454100 CCAAAAAATACCATTTTACCCTTGAACTTTCCAAAATCCCATTTTTAACCTCGATTTGA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
* * *
7454159 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATCTCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
*
7454218 CCAAAAATTATCATTT
1 CCAAAAATTACCATTT
7454234 CGCCCCCGGG
Statistics
Matches: 384, Mismatches: 43, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
58 54 0.14
59 330 0.86
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTTA
Found at i:7457198 original size:99 final size:98
Alignment explanation
Indices: 7456893--7457318 Score: 425
Period size: 99 Copynumber: 4.3 Consensus size: 98
7456883 CACCATTGCT
* * * * * * *
7456893 GCTTGAATCTTTCCCTTCGTGTTTTTTTGAGGTAC-AAGGTTCCCCGTTGTGACTTAAACCCTTC
1 GCTTAAATCTTTCCCTTCATG--CTTCTGAGGTACGAA-GTTCGCCGTTGCGACTTAAACCTTTC
* * *
7456957 CCTT-TGTATCTT-AGTGGTACTGGATTCGTCGTTGTG
63 CCTTAT-TATCTTCA-TGGTACTGGATTCGCCGATGCG
* ** * * **
7456993 GCTTAAATCTTTCCCTTCATGCTTCTAAGGTGTGAGGTTCGTCGTTGCGAC--AAATTTTTCCCT
1 GCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAAGTTCGCCGTTGCGACTTAAACCTTTCCCT
* *
7457056 CCATTATCTTCATGGTACTGGATTTGCC-ATTGCG
66 -TATTATCTTCATGGTACTGGATTCGCCGA-TGCG
*
7457090 GCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAAGTTCGTCGTTGCGACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAAGTTCGCCGTTGCGACTTAAACCTTTCCCT
**
7457155 CTATTATCTTCATGGTACTGGATTCGCCGACACG
66 -TATTATCTTCATGGTACTGGATTCGCCGATGCG
* * **
7457189 GCTTAAATCTTTCCTTTCATGCTTCTGAGGTACGAGGTTCGCCAATGCGACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAAGTTCGCCGTTGCGACTTAAACCTTTCCCT
* * * *
7457254 TCA-TATCTTCGTGGTACTAGATTCGCTGTTGCG
66 T-ATTATCTTCATGGTACTGGATTCGCCGATGCG
* * *
7457287 GCTTAAATCTTTCCCTCCCTACTTCTGAGGTA
1 GCTTAAATCTTTCCCTTCATGCTTCTGAGGTA
7457319 AAAACCTGTA
Statistics
Matches: 273, Mismatches: 44, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
96 9 0.03
97 70 0.26
98 74 0.27
99 100 0.37
100 20 0.07
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (98 bp):
GCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAAGTTCGCCGTTGCGACTTAAACCTTTCCCT
TATTATCTTCATGGTACTGGATTCGCCGATGCG
Found at i:7457270 original size:49 final size:49
Alignment explanation
Indices: 7456829--7457302 Score: 209
Period size: 49 Copynumber: 9.6 Consensus size: 49
7456819 TTGGGGTCTC
* * * * * *
7456829 AGATTTGCCATTGTGGCTTCAATCTTT-CCTT-ATATGTCTTCGCGGTACT
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATA--TCTTCGTGGTACG
* * * * * * * * * *
7456878 AGATTCACCATTGCTGCTTGAATCTTTCCCTTCGTGTTTTTTTGAGGTACA
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTC--ATATCTTCGTGGTACG
* * * * * * ** *
7456929 AGGTTCCCCGTTGTGACTTAAACCCTTCCCTTTGTATCTTAGTGGTACTG
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTAC-G
* * * **
7456979 -GATTCGTCGTTGTGGCTTAAATCTTTCCCTTCAT-GCTTC-TAAGGTGTG
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGT--GGTACG
* * * * * *
7457027 AGGTTCGTCGTTGCGAC--AAATTTTTCCCTCCATTATCTTCATGGTACTG
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCA-TATCTTCGTGGTAC-G
* * * *
7457076 -GATTTGCCATTGCGGCTTAAATCTTTCCCTTCAT-GCTTCTGAGGTACG
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTC-GTGGTACG
* * * *
7457124 A-AGTTCGTCGTTGCGACTTAAACCTTTCCC-TCTATTATCTTCATGGTACTG
1 AGA-TTCGCCGTTGCGGCTTAAATCTTTCCCTTC-A-TATCTTCGTGGTAC-G
*** * * *
7457175 -GATTCGCCGACACGGCTTAAATCTTTCCTTTCAT-GCTTCTGAGGTACG
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTC-GTGGTACG
* ** * * *
7457223 AGGTTCGCCAATGCGACTTAAACCTTTCCCTTCATATCTTCGTGGTACT
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTACG
*
7457272 AGATTCGCTGTTGCGGCTTAAATCTTTCCCT
1 AGATTCGCCGTTGCGGCTTAAATCTTTCCCT
7457303 CCCTACTTCT
Statistics
Matches: 309, Mismatches: 90, Indels: 52
0.69 0.20 0.12
Matches are distributed among these distances:
47 14 0.05
48 32 0.10
49 173 0.56
50 49 0.16
51 40 0.13
53 1 0.00
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.39
Consensus pattern (49 bp):
AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATATCTTCGTGGTACG
Found at i:7457302 original size:197 final size:195
Alignment explanation
Indices: 7456865--7457318 Score: 502
Period size: 197 Copynumber: 2.3 Consensus size: 195
7456855 TCCTTATATG
* * * * * * *
7456865 TCTTCGCGGTACTAGATTCACCATTGCTGCTTGAATCTTTCCCTTCGTGTTTTTTTGAGGTACAA
1 TCTTCGTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATG--CTTCTGAGGTACAA
* * ****
7456930 GGTTCCCCGTTGTGACTTAAACCCTTCCCTTTGTATCTTAGTGGTACTGGATTCGTCGTTGTGGC
64 GGTTCCCCGTTGCGACTTAAACCCTTCCCTTTGTATCTTAGTGGTACTGGATTCGCCGACACGGC
** * ** **
7456995 TTAAATCTTTCCCTTCATGCTTCTAAGGTGTGAGGTTCGTCGTTGCGACAAATTTTTCCCTCCAT
129 TTAAATCTTTCCCTTCATGCTTCTAAGGTACGAGGTTCGCCAATGCGACAAACCTTTCCCTCCAT
7457060 TA
194 TA
* * *
7457062 TCTTCATGGTACTGGATTTGCCATTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAA-
1 TCTTCGTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTAC-AAG
** *
7457126 GTTCGTCGTTGCGACTTAAACCTTTCCCTCTAT-TATCTTCA-TGGTACTGGATTCGCCGACACG
65 GTTCCCCGTTGCGACTTAAACCCTTCCCT-T-TGTATCTT-AGTGGTACTGGATTCGCCGACACG
* *
7457189 GCTTAAATCTTTCCTTTCATGCTTCTGAGGTACGAGGTTCGCCAATGCGACTTAAACCTTTCCCT
127 GCTTAAATCTTTCCCTTCATGCTTCTAAGGTACGAGGTTCGCCAATGCGAC--AAACCTTTCCCT
*
7457254 TCA-TA
190 CCATTA
** * * *
7457259 TCTTCGTGGTACTAGATTCGCTGTTGCGGCTTAAATCTTTCCCTCCCTACTTCTGAGGTA
1 TCTTCGTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTA
7457319 AAAACCTGTA
Statistics
Matches: 214, Mismatches: 37, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
195 35 0.16
196 70 0.33
197 97 0.45
198 12 0.06
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (195 bp):
TCTTCGTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGG
TTCCCCGTTGCGACTTAAACCCTTCCCTTTGTATCTTAGTGGTACTGGATTCGCCGACACGGCTT
AAATCTTTCCCTTCATGCTTCTAAGGTACGAGGTTCGCCAATGCGACAAACCTTTCCCTCCATTA
Found at i:7461376 original size:19 final size:19
Alignment explanation
Indices: 7461348--7461385 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7461338 ATTACATGGA
7461348 CTGCTCTTTTTGCCTTGTT
1 CTGCTCTTTTTGCCTTGTT
* *
7461367 CTGCTGTTTTTGCTTTGTT
1 CTGCTCTTTTTGCCTTGTT
7461386 TCTCCCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.21, G:0.18, T:0.61
Consensus pattern (19 bp):
CTGCTCTTTTTGCCTTGTT
Found at i:7461745 original size:14 final size:15
Alignment explanation
Indices: 7461726--7461756 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7461716 GATTTGGGTA
7461726 TTTGTAAATGGA-TT
1 TTTGTAAATGGACTT
7461740 TTTGTAAATGGACTT
1 TTTGTAAATGGACTT
7461755 TT
1 TT
7461757 AAATAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (15 bp):
TTTGTAAATGGACTT
Found at i:7461790 original size:15 final size:14
Alignment explanation
Indices: 7461766--7461806 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
7461756 TAAATAAAAG
7461766 TTTATTTTATTTAT
1 TTTATTTTATTTAT
7461780 TTTAGTTTTATTTA-
1 TTTA-TTTTATTTAT
7461794 TTTA-TTTATTTAT
1 TTTATTTTATTTAT
7461807 AGTCCGGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 8 0.32
14 8 0.32
15 9 0.36
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTTAT
Found at i:7461948 original size:19 final size:19
Alignment explanation
Indices: 7461926--7461975 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
7461916 TTTTTATTAA
7461926 TATTTTGAATTTTAAAAAT
1 TATTTTGAATTTTAAAAAT
**
7461945 TATTTTGAATTTTTGAAAT
1 TATTTTGAATTTTAAAAAT
*
7461964 TAGTTT-AATTTT
1 TATTTTGAATTTT
7461976 TTGTAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
TATTTTGAATTTTAAAAAT
Found at i:7464355 original size:29 final size:29
Alignment explanation
Indices: 7464323--7464421 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 29
7464313 GTTATTTTTC
7464323 GGTCACTCAACTATGAAAAGTTACAAAAT
1 GGTCACTCAACTATGAAAAGTTACAAAAT
* * * ****
7464352 GGTCGCCCAACTATTACTAAAGTT-CTTTTT
1 GGTCACTCAACTATGA--AAAGTTACAAAAT
7464382 CGGTCACTCAACTATGAAAAGTTACAAAAT
1 -GGTCACTCAACTATGAAAAGTTACAAAAT
*
7464412 AGTCAC-CAAC
1 GGTCACTCAAC
7464422 AATTCAATGT
Statistics
Matches: 51, Mismatches: 15, Indels: 9
0.68 0.20 0.12
Matches are distributed among these distances:
28 4 0.08
29 24 0.47
30 4 0.08
31 19 0.37
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.27
Consensus pattern (29 bp):
GGTCACTCAACTATGAAAAGTTACAAAAT
Found at i:7465158 original size:23 final size:21
Alignment explanation
Indices: 7465106--7465158 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
7465096 TTGAATTTTT
*
7465106 TTAAAAATATTTATGAAAAATA
1 TTAAAAA-ATTTATCAAAAATA
**
7465128 TTTTAAAATTCTATCAAATAATA
1 TTAAAAAATT-TATCAAA-AATA
7465151 TTAAAAAA
1 TTAAAAAA
7465159 CGTAAATTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
21 3 0.12
22 11 0.46
23 10 0.42
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (21 bp):
TTAAAAAATTTATCAAAAATA
Found at i:7466984 original size:17 final size:17
Alignment explanation
Indices: 7466962--7467025 Score: 83
Period size: 17 Copynumber: 3.8 Consensus size: 17
7466952 AATTTTAACT
*
7466962 TTTATTTTAAATTTGAA
1 TTTATTTTAAATTTAAA
7466979 TTTATTTTAAATTTAAA
1 TTTATTTTAAATTTAAA
***
7466996 TTTATTTTGGGTTTAAA
1 TTTATTTTAAATTTAAA
*
7467013 TTTATTTTGAATT
1 TTTATTTTAAATT
7467026 AAAAATTGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (17 bp):
TTTATTTTAAATTTAAA
Found at i:7468980 original size:30 final size:29
Alignment explanation
Indices: 7468907--7469086 Score: 132
Period size: 30 Copynumber: 6.0 Consensus size: 29
7468897 TAGAGGCCCT
* * *
7468907 AAACTGTCCAAAAATTATATTTTAACCACCCG
1 AAACT-TCCTAAAATTACATTTTTA-C-CCCG
7468939 -AACTTCTCTAAAATTACATTTTTCACCCCG
1 AAACTTC-CTAAAATTACATTTTT-ACCCCG
*
7468969 AAACTTCCTAAAATTACATTTTTACCCCT
1 AAACTTCCTAAAATTACATTTTTACCCCG
* * * **
7468998 AAACTTCATAAAAATTTCATTCTTGACCCTA
1 AAACTTCCT-AAAATTACATT-TTTACCCCG
** *
7469029 AAACTTCCCCAAATTACATTTTTACCCCCA
1 AAACTTCCTAAAATTACATTTTTA-CCCCG
*
7469059 AAACTT-TTAAAAATTACCA-TTTTACCCC
1 AAACTTCCT-AAAATTA-CATTTTTACCCC
7469087 TAAATGTCCA
Statistics
Matches: 122, Mismatches: 18, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
29 20 0.16
30 62 0.51
31 39 0.32
32 1 0.01
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (29 bp):
AAACTTCCTAAAATTACATTTTTACCCCG
Found at i:7469013 original size:60 final size:60
Alignment explanation
Indices: 7468948--7469081 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
7468938 GAACTTCTCT
* * *
7468948 AAAATTACATTTTTCACCCCGAAACTTCCTAAAATTACATTTTTA-CCCCTAAACTTCATA
1 AAAATTACATTTTTCACCCCAAAACTTCCCAAAATTACATTTTTACCCCCAAAACTT-ATA
* * * * * *
7469008 AAAATTTCATTCTTGACCCTAAAACTTCCCCAAATTACATTTTTACCCCCAAAACTTTTA
1 AAAATTACATTTTTCACCCCAAAACTTCCCAAAATTACATTTTTACCCCCAAAACTTATA
7469068 AAAATTACCATTTT
1 AAAATTA-CATTTT
7469082 ACCCCTAAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
60 46 0.75
61 15 0.25
ACGTcount: A:0.37, C:0.26, G:0.01, T:0.36
Consensus pattern (60 bp):
AAAATTACATTTTTCACCCCAAAACTTCCCAAAATTACATTTTTACCCCCAAAACTTATA
Found at i:7469119 original size:11 final size:11
Alignment explanation
Indices: 7469103--7469127 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7469093 TCCAAAAACT
7469103 CGTATTTTAAA
1 CGTATTTTAAA
7469114 CGTATTTTAAA
1 CGTATTTTAAA
7469125 CGT
1 CGT
7469128 TTTGTGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (11 bp):
CGTATTTTAAA
Found at i:7473315 original size:10 final size:10
Alignment explanation
Indices: 7473297--7473361 Score: 75
Period size: 9 Copynumber: 6.9 Consensus size: 10
7473287 TTCAATGAAT
*
7473297 AAAAGAGAAG
1 AAAAAAGAAG
7473307 AAAAAAGAAG
1 AAAAAAGAAG
7473317 -AAAAAGAA-
1 AAAAAAGAAG
*
7473325 AAGAAA-AAG
1 AAAAAAGAAG
7473334 AAAAAAGAA-
1 AAAAAAGAAG
*
7473343 AAAAAAGAAA
1 AAAAAAGAAG
7473353 AAAAAAGAA
1 AAAAAAGAA
7473362 AAAGAAATGG
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
8 2 0.04
9 26 0.54
10 20 0.42
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:7473325 original size:6 final size:6
Alignment explanation
Indices: 7473314--7473368 Score: 67
Period size: 6 Copynumber: 9.0 Consensus size: 6
7473304 AAGAAAAAAG
* *
7473314 AAGAAA AAG-AA AAGAAA AAGAAAA AAGAAA AAAAAGA AAAAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAG-AAA AAGAAA AAGAA-A AAGAAA AAGAAA
7473363 AAGAAA
1 AAGAAA
7473369 TGGAGAGGTC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
5 5 0.11
6 27 0.61
7 12 0.27
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:7473336 original size:27 final size:26
Alignment explanation
Indices: 7473304--7473368 Score: 105
Period size: 27 Copynumber: 2.5 Consensus size: 26
7473294 AATAAAAGAG
*
7473304 AAGAAAAAAGAAGAAAAAGAAAAGAAA
1 AAGAAAAAAGAAAAAAAAGAAAA-AAA
7473331 AAGAAAAAAGAAAAAAAAGAAAAAAA
1 AAGAAAAAAGAAAAAAAAGAAAAAAA
7473357 AAG-AAAAAGAAA
1 AAGAAAAAAGAAA
7473369 TGGAGAGGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
25 9 0.24
26 6 0.16
27 22 0.59
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (26 bp):
AAGAAAAAAGAAAAAAAAGAAAAAAA
Found at i:7473362 original size:10 final size:10
Alignment explanation
Indices: 7473304--7473364 Score: 77
Period size: 10 Copynumber: 5.8 Consensus size: 10
7473294 AATAAAAGAG
*
7473304 AAGAAAAAAG
1 AAGAAAAAAA
7473314 AAGAAAAAGAA
1 AAGAAAAA-AA
7473325 AAGAAAAAGAA
1 AAGAAAAA-AA
*
7473336 AAAAGAAAAAA
1 AAGA-AAAAAA
7473347 AAGAAAAAAA
1 AAGAAAAAAA
7473357 AAGAAAAA
1 AAGAAAAA
7473365 GAAATGGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
10 22 0.48
11 20 0.43
12 4 0.09
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:7474633 original size:50 final size:50
Alignment explanation
Indices: 7474528--7474892 Score: 303
Period size: 50 Copynumber: 7.3 Consensus size: 50
7474518 GAAACACGAC
* * * *
7474528 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAA
1 GGGAAAGATCTAAG-TCGCAACGGCAGATCCAGTACCTCAAAAAGACAGAA
* * * * *
7474579 GGGAAAGGTCTAAGTCACAACGGCAGA-CCGTGTACCTC-AGAAGACACGAC
1 GGGAAAGATCTAAGTCGCAACGGCAGATCC-AGTACCTCAAAAAGACA-GAA
* * *
7474629 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCTCAAAAAGATAGAA
1 GGGAAAGATCTAAG-TCGCAACGGCAGATCCAGTACCTCAAAAAGACAGAA
* ** * *
7474680 GGGAAAGATCTAAGTCGCGACGGTGGATCCAGTACCGCAAAAAGACAAAA
1 GGGAAAGATCTAAGTCGCAACGGCAGATCCAGTACCTCAAAAAGACAGAA
* * * *
7474730 GGGAAAGGTCTAAGTCGCAACGGCAGA-CCTGTACCTC-AGAAGACACGAC
1 GGGAAAGATCTAAGTCGCAACGGCAGATCCAGTACCTCAAAAAGACA-GAA
* * **
7474779 GAGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCGT-AAAAAGACAGAA
1 GGGAAAGATCTAAG-TCGCAACGGCAGATCCAGTACC-TCAAAAAGACAGAA
* * * ** * **
7474830 AGGAATGATCTAAGCCGTGACGGCGGATCCAGTA-C-CACGAAGACATGAA
1 GGGAAAGATCTAAGTCGCAACGGCAGATCCAGTACCTCAAAAAGACA-GAA
*
7474879 GAGAAAGATCTAAG
1 GGGAAAGATCTAAG
7474893 CCGCGACGAT
Statistics
Matches: 251, Mismatches: 51, Indels: 26
0.77 0.16 0.08
Matches are distributed among these distances:
48 14 0.06
49 45 0.18
50 110 0.44
51 66 0.26
52 16 0.06
ACGTcount: A:0.39, C:0.22, G:0.27, T:0.12
Consensus pattern (50 bp):
GGGAAAGATCTAAGTCGCAACGGCAGATCCAGTACCTCAAAAAGACAGAA
Found at i:7474809 original size:100 final size:100
Alignment explanation
Indices: 7474528--7475012 Score: 402
Period size: 101 Copynumber: 4.8 Consensus size: 100
7474518 GAAACACGAC
* * * * *
7474528 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCTC-AGAAGACAGAAGAGAAAGATCTAAG
* * * ** * * * *
7474593 TCACAACGGCAGA-CCGTGTACCTC-AGAAGACACG-AC
64 CCGCGACGGTGGATCC-AGTACCGCAAAAAGACA-GAAA
* * *
7474629 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCTCAAAAAGATAGAAGGGAAAGATCTAAG
1 GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCTC-AGAAGACAGAAGAGAAAGATCTAAG
*
7474694 TCGCGACGGTGGATCCAGTACCGCAAAAAGACA-AAA
64 CCGCGACGGTGGATCCAGTACCGCAAAAAGACAGAAA
* * * * *
7474730 GGGAAAGGTCTAAGTCGCAACGGCAGA-CCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGA
1 GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCTCAGAAGACA-GAAGAGAAAGATCTAAG-
* *
7474794 CCGCAACGGTGGATCCAGTACCGTAAAAAGACAGAAA
64 CCGCGACGGTGGATCCAGTACCGCAAAAAGACAGAAA
* ** *
7474831 -GGAATGATCTAAGCCGTGACGGCGGATCCAGTACCAC-GAAGACATGAAGAGAAAGATCTAAGC
1 GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCTCAGAAGACA-GAAGAGAAAGATCTAAGC
* * **
7474894 CGCGACGATGGATCTAGTA-C-CATGAAGACATGAAA
65 CGCGACGGTGGATCCAGTACCGCAAAAAGACA-GAAA
* * * *
7474929 -AGAAAGATCTAACCCG-AGACGGCGGATTCAGTACCAC-GAAGACATGAAGAGAAAGATCTAA-
1 GGGAAAGATCTAAGCCGCA-ACGGCGGATCCAGTACCTCAGAAGACA-GAAGAGAAAGATCTAAG
* * *
7474990 CCTGCGATGGCGGATCCCGTACC
64 CC-GCGACGGTGGATCCAGTACC
7475013 ACGAAGATTT
Statistics
Matches: 324, Mismatches: 49, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
97 9 0.03
98 79 0.24
99 42 0.13
100 84 0.26
101 101 0.31
102 9 0.03
ACGTcount: A:0.38, C:0.23, G:0.27, T:0.13
Consensus pattern (100 bp):
GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCTCAGAAGACAGAAGAGAAAGATCTAAGCC
GCGACGGTGGATCCAGTACCGCAAAAAGACAGAAA
Found at i:7474840 original size:150 final size:151
Alignment explanation
Indices: 7474529--7474865 Score: 552
Period size: 150 Copynumber: 2.2 Consensus size: 151
7474519 AAACACGACG
*
7474529 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAG-CCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
*
7474594 CACAACGGCAGACCGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGACCGCAACGGCGGATC
65 CACAACGGCAGACCGTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATC
* *
7474659 CAGTACCTCAAAAAGATAGAAG
130 CAGTACCTCAAAAAGACAGAAA
* *
7474681 GGAAAGATCTAAGTCGCGACGGTGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGTC
1 GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGTC
* *
7474746 GCAACGGCAGACC-TGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGTGGATCC
66 ACAACGGCAGACCGTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATCC
7474810 AGTACCGT-AAAAAGACAGAAA
131 AGTACC-TCAAAAAGACAGAAA
* *
7474831 GGAATGATCTAAGCCGTGACGGCGGATCCAGTACC
1 GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACC
7474866 ACGAAGACAT
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
150 97 0.56
151 62 0.36
152 13 0.08
ACGTcount: A:0.38, C:0.23, G:0.27, T:0.12
Consensus pattern (151 bp):
GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGTC
ACAACGGCAGACCGTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATCC
AGTACCTCAAAAAGACAGAAA
Found at i:7474907 original size:49 final size:49
Alignment explanation
Indices: 7474530--7475019 Score: 337
Period size: 49 Copynumber: 9.8 Consensus size: 49
7474520 AACACGACGG
* ** * *
7474530 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACA-AAAGG
1 GAAAGATCTAAG-CCGCGACGGCGGATCCAGTA-C-CACGAAGACATGAAGA
* * * * * * * * * *
7474581 GAAAGGTCTAAGTCACAACGGCAGA-CCGTGTACCTCAGAAGACACGACGG
1 GAAAGATCTAAGCCGCGACGGCGGATCC-AGTACCAC-GAAGACATGAAGA
* * * * * *
7474631 GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCTCAAAAAGATAGAAGG
1 GAAAGATCTAAG-CCGCGACGGCGGATCCAGTACCACGAAGACAT-GAAGA
* * ** * *
7474682 GAAAGATCTAAGTCGCGACGGTGGATCCAGTACCGCAAAAAGACA-AAAGG
1 GAAAGATCTAAGCCGCGACGGCGGATCCAGTA-C-CACGAAGACATGAAGA
* * * * * * * *
7474732 GAAAGGTCTAAGTCGCAACGGCAGA-CCTGTACCTCAGAAGACACGACGA
1 GAAAGATCTAAGCCGCGACGGCGGATCCAGTACCAC-GAAGACATGAAGA
* * **
7474781 GAAAGATCTAAGACCGCAACGGTGGATCCAGTACCGTAAAAAGACA-GAA-A
1 GAAAGATCTAAG-CCGCGACGGCGGATCCAGTACC--ACGAAGACATGAAGA
* *
7474831 GGAATGATCTAAGCCGTGACGGCGGATCCAGTACCACGAAGACATGAAGA
1 -GAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGACATGAAGA
** * * *
7474881 GAAAGATCTAAGCCGCGACGATGGATCTAGTACCATGAAGACATGAAAA
1 GAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGACATGAAGA
* * *
7474930 GAAAGATCTAACCCGAGACGGCGGATTCAGTACCACGAAGACATGAAGA
1 GAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGACATGAAGA
* *
7474979 GAAAGATCTAA-CCTGCGATGGCGGATCCCGTACCACGAAGA
1 GAAAGATCTAAGCC-GCGACGGCGGATCCAGTACCACGAAGA
7475020 TTTAAAAGGA
Statistics
Matches: 348, Mismatches: 73, Indels: 38
0.76 0.16 0.08
Matches are distributed among these distances:
47 1 0.00
48 17 0.05
49 147 0.42
50 104 0.30
51 65 0.19
52 14 0.04
ACGTcount: A:0.38, C:0.23, G:0.27, T:0.12
Consensus pattern (49 bp):
GAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGACATGAAGA
Found at i:7474914 original size:150 final size:150
Alignment explanation
Indices: 7474529--7475012 Score: 495
Period size: 150 Copynumber: 3.2 Consensus size: 150
7474519 AAACACGACG
* * * *
7474529 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAG-CCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGAGAAAGATCTAAGC
* * *
7474594 CACAACGGCAGACCGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGACCGCAACGGCGGATC
65 CGCAACGACAGACC-TGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATC
* *
7474659 CAGTACCTCAAAAAGATAGAAG
129 CAGTACCTCAAAAAGACAGAAA
* * * * *
7474681 GGAAAGATCTAAGTCGCGACGGTGGATCCAGTACCGCAAAAAGACAAAAGGGAAAGGTCTAAGTC
1 GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGAGAAAGATCTAAGCC
* *
7474746 GCAACGGCAGACCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGTGGATCCA
66 GCAACGACAGACCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATCCA
7474811 GTACCGT-AAAAAGACAGAAA
131 GTACC-TCAAAAAGACAGAAA
* * ** *
7474831 GGAATGATCTAAGCCGTGACGGCGGATCCAGTA-C-CACGAAGACATGAAGAGAAAGATCTAAGC
1 GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCGCAAAAAGACA-AAAGAGAAAGATCTAAGC
* ** * * ** *
7474894 CGCGACGATGGATCTAGTA-C-CATGAAGACATGAAAAGAAAGATCTAA-CCCG-AGACGGCGGA
65 CGCAACGACAGACCT-GTACCTCA-GAAGACACGACGAGAAAGATCTAAGACCGCA-ACGGCGGA
* **
7474955 TTCAGTA-C-CACGAAGACATG-AA
127 TCCAGTACCTCAAAAAGACA-GAAA
* *
7474977 GAGAAAGATCTAA-CCTGCGATGGCGGATCCCGTACC
1 G-GAAAGATCTAAGCC-GCGACGGCGGATCCAGTACC
7475013 ACGAAGATTT
Statistics
Matches: 287, Mismatches: 35, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
146 12 0.04
147 28 0.10
148 27 0.09
149 47 0.16
150 98 0.34
151 62 0.22
152 13 0.05
ACGTcount: A:0.38, C:0.23, G:0.27, T:0.13
Consensus pattern (150 bp):
GGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCGCAAAAAGACAAAAGAGAAAGATCTAAGCC
GCAACGACAGACCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGACCGCAACGGCGGATCCA
GTACCTCAAAAAGACAGAAA
Found at i:7474961 original size:98 final size:99
Alignment explanation
Indices: 7474631--7474989 Score: 336
Period size: 100 Copynumber: 3.6 Consensus size: 99
7474621 GACACGACGG
* * * * * *
7474631 GAAAGATCTAAGACCGCA-ACGGCGGATCCAGTACCTCAAAAAGATAGAAGGGAAAGATCTAAG-
1 GAAAGATCTAA-CCCG-AGACGGCGGATCCAGTACCACGAAGACAT-GAAGAGAAAGATCTAAGA
* * * *
7474694 TCGCGACGGTGGATCCAGTACCGCAAAAAGACA-AAAGG
63 CCGCAACGATGGATCCAGTACCG-AAAAAGACAGAAA-A
* ** * * * * *
7474732 GAAAGGTCTAAGTCGCA-ACGGCAGA-CCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGAC
1 GAAAGATCTAACCCG-AGACGGCGGATCCAGTACCAC-GAAGACATGAAGAGAAAGATCTAAGAC
* *
7474795 CGCAACGGTGGATCCAGTACCGTAAAAAGACAGAAAG
64 CGCAACGATGGATCCAGTACCG-AAAAAGACAGAAAA
* * *
7474832 GAATGATCTAAGCCGTGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAG-CCG
1 GAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGACCG
* * **
7474896 CGACGATGGATCTAGTACC-ATGAAGACATGAAAA
66 CAACGATGGATCCAGTACCGAAAAAGACA-GAAAA
*
7474930 GAAAGATCTAACCCGAGACGGCGGATTCAGTACCACGAAGACATGAAGAGAAAGATCTAA
1 GAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAA
7474990 CCTGCGATGG
Statistics
Matches: 219, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
97 7 0.03
98 60 0.27
99 43 0.20
100 88 0.40
101 21 0.10
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.13
Consensus pattern (99 bp):
GAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGACCG
CAACGATGGATCCAGTACCGAAAAAGACAGAAAA
Found at i:7475032 original size:98 final size:99
Alignment explanation
Indices: 7474630--7475032 Score: 304
Period size: 100 Copynumber: 4.1 Consensus size: 99
7474620 AGACACGACG
* * * * * *
7474630 GGAAAGATCTAAGACCGCA-ACGGCGGATCCAGTACCTCAAAAAGATAGAAGGGAAAGATCTAAG
1 GGAAAGATCTAA-CCCG-AGACGGCGGATCCAGTACCACGAAGACAT-GAAGAGAAAGATCTAAG
* ** ** *
7474694 TCGCGACGGTGGATCCAGTACCGCAAAAAGACA--AAAG
63 CCGCGACGACGGATCCAGTA-C-CACGAAGACATGAAAA
* ** * * * * *
7474731 GGAAAGGTCTAAGTCGCA-ACGGCAGA-CCTGTACCTCAGAAGACACGACGAGAAAGATCTAAGA
1 GGAAAGATCTAACCCG-AGACGGCGGATCCAGTACCAC-GAAGACATGAAGAGAAAGATCTAAG-
* ** **
7474794 CCGCAACGGTGGATCCAGTACCGTAAAAAGACA-G-AAA
63 CCGCGACGACGGATCCAGTACC--ACGAAGACATGAAAA
* * *
7474831 GGAATGATCTAAGCCGTGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCCG
1 GGAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCCG
* * *
7474896 CGACGATGGATCTAGTACCATGAAGACATGAAAA
66 CGACGACGGATCCAGTACCACGAAGACATGAAAA
*
7474930 -GAAAGATCTAACCCGAGACGGCGGATTCAGTACCACGAAGACATGAAGAGAAAGATCTAA-CCT
1 GGAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCC-
* * * * *
7474993 GCGATGGCGGATCCCGTACCACGAAGA-TTTAAAA
65 GCGACGACGGATCCAGTACCACGAAGACATGAAAA
7475027 GGAAAG
1 GGAAAG
7475033 GTTTAAGTCA
Statistics
Matches: 251, Mismatches: 40, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
97 14 0.06
98 84 0.33
99 47 0.19
100 87 0.35
101 19 0.08
ACGTcount: A:0.39, C:0.21, G:0.27, T:0.13
Consensus pattern (99 bp):
GGAAAGATCTAACCCGAGACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCCG
CGACGACGGATCCAGTACCACGAAGACATGAAAA
Found at i:7475409 original size:78 final size:77
Alignment explanation
Indices: 7475295--7475446 Score: 180
Period size: 78 Copynumber: 2.0 Consensus size: 77
7475285 TAAGATGCTG
* * * *
7475295 ATCTCTTACCCCGAGCCAGGGGCAGATTGAAGCCATTTAATCTTTTACCCCGAGTCTGGGGCAGA
1 ATCTCTTACCCCGAGCCAGGGACAAATTGAAGCCATTTAATATTTTACCCCAAGT-TGGGGCAGA
*
7475360 TCATCATCAACCA
65 TCACCATCAACCA
* ** * * *
7475373 ATCTGTTACCCCGAGCTTGGGACAAATTGCAA-CCATTTGATATTTTACCTCAAGTTTGGGCAGA
1 ATCTCTTACCCCGAGCCAGGGACAAATTG-AAGCCATTTAATATTTTACCCCAAGTTGGGGCAGA
7475437 TCACCATCAA
65 TCACCATCAA
7475447 TCAACCTTAC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
77 17 0.27
78 43 0.69
79 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (77 bp):
ATCTCTTACCCCGAGCCAGGGACAAATTGAAGCCATTTAATATTTTACCCCAAGTTGGGGCAGAT
CACCATCAACCA
Found at i:7476008 original size:134 final size:133
Alignment explanation
Indices: 7475767--7476029 Score: 472
Period size: 134 Copynumber: 2.0 Consensus size: 133
7475757 GCGAGTAAAT
*
7475767 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCT
1 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
*
7475832 TGATGAGACACTGAGAAGTAGACCAAATTCGTCTTCCGGAGGAGATCCAGAGAAGCGAATTAAAA
66 TGATGAGACACTGAGAAGTAGACCAAATTCGTCTTCAGGAGGAGATCCAGAGAA-CGAATTAAAA
7475897 AAAG
130 AAAG
*
7475901 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATTGTTAGCTTCC
1 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
* *
7475966 TGATGAGACACTGAGAAGTGGACCAAATTCGTCTTCATGAGGAGATCCAGAGAACGAATTAAAA
66 TGATGAGACACTGAGAAGTAGACCAAATTCGTCTTCAGGAGGAGATCCAGAGAACGAATTAAAA
7476030 TAAGTGATGC
Statistics
Matches: 124, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
133 10 0.08
134 114 0.92
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (133 bp):
CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
TGATGAGACACTGAGAAGTAGACCAAATTCGTCTTCAGGAGGAGATCCAGAGAACGAATTAAAAA
AAG
Found at i:7476234 original size:338 final size:340
Alignment explanation
Indices: 7475582--7476234 Score: 1096
Period size: 338 Copynumber: 1.9 Consensus size: 340
7475572 AACTTCTTTG
*
7475582 TGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTG
1 TGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGACACTGAGAAGTG
* *
7475647 GACCAAATTCGTCTTCTTGAAAAGAACCAGAGAAGCGAATTAAAACAAGTGATGCGGTCATCTTC
66 GACCAAATTCGTCTTCATGAAAAGAACCAGAGAAGCGAATTAAAACAAGTGATGCAGTCATCTTC
* * * * *
7475712 CTGATGAGACACTGAGAAGAAGACCAAATCACACCCAGGCTCAATGCGAGTAAATCTTCGAATCC
131 CTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCC
* *
7475777 CAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCTTGATGAGACA
196 CAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCCTGATGAGACA
*
7475842 CTGAGAAGTAGACCAAATTCGTCTTCCGGAGGAGATCCAGAGAAGCGAATTAAAAAAAGCTTCGA
261 CTGAGAAGTAGACCAAATTCGTCTTCCGGAAGAGATCCAGAGAAGCGAATTAAAAAAAGCTTCGA
7475907 ATCCCAGCTTCCTGA
326 ATCCCAGCTTCCTGA
* *
7475922 TGAGATACTGAGAAGCAGGTCGAAGCAAT-AAATTGTTAGCTTCCTGATGAGACACTGAGAAGTG
1 TGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGACACTGAGAAGTG
** * *
7475986 GACCAAATTCGTCTTCATGAGGAGATCCAGAGAA-CGAATTAAAATAAGTGATGCAGTCATCTTC
66 GACCAAATTCGTCTTCATGAAAAGAACCAGAGAAGCGAATTAAAACAAGTGATGCAGTCATCTTC
7476050 CTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCC
131 CTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCC
*
7476115 CAGCTTCCTGATGAGACACTGAGAAGCAGGTTGAAGCAATAAATGGTTAGCTTCCTGATGAGACA
196 CAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCCTGATGAGACA
* *
7476180 GTGAGAAGT-GAACCAAATTCGTCTTCCTGAAGAGATCCAGAGAAGCGAATTAAAA
261 CTGAGAAGTAG-ACCAAATTCGTCTTCCGGAAGAGATCCAGAGAAGCGAATTAAAA
7476235 CAAGTGATGC
Statistics
Matches: 292, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
337 1 0.00
338 200 0.68
339 63 0.22
340 28 0.10
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (340 bp):
TGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGACACTGAGAAGTG
GACCAAATTCGTCTTCATGAAAAGAACCAGAGAAGCGAATTAAAACAAGTGATGCAGTCATCTTC
CTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCC
CAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCCTGATGAGACA
CTGAGAAGTAGACCAAATTCGTCTTCCGGAAGAGATCCAGAGAAGCGAATTAAAAAAAGCTTCGA
ATCCCAGCTTCCTGA
Found at i:7476685 original size:206 final size:205
Alignment explanation
Indices: 7475901--7477028 Score: 1676
Period size: 206 Copynumber: 5.5 Consensus size: 205
7475891 TTAAAAAAAG
* * *
7475901 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAATTGTTAGCTTCC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
* * * *
7475966 TGATGAGACACTGAGAAGTGGACCAAATTCGTCTTCATGAGGAGATC-CAGAGAA-CGAATTAAA
66 TGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGA-CACAGAGAAGCGAATTGAA
* * *
7476029 ATAAGTGATGCAGTCATCTTCCTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAA
130 ACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAA
7476094 TGCGAGCAAAT
195 TGCGAGCAAAT
*
7476105 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTTGAAGCAATAAATGGTTAGCTTCC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
** * * *
7476170 TGATGAGACAGTGAGAAGTGAACCAAATTCGTCTTCCTGAAGAGATC-CAGAGAAGCGAATTAAA
66 TGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGA-CACAGAGAAGCGAATTGAA
* * *
7476234 ACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACTCATGCTCGA
130 ACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAA
7476299 TGCGAGCAAAT
195 TGCGAGCAAAT
* * *
7476310 CTTTGAACCCCAACTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAAT-AAATGGTTAGCTTC
* *
7476375 CTGATGAGACAC--AGAAGTGGACCCAATTCGTCTTTCTGATGAGACACAGAGAAGCGAATTGAA
65 CTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGAA
* *
7476438 ACGAA-TGATGCGGTCATCTTCTTGATGAGACACTAAGAAGAAGACCAAATCAAACCCAAGCTCA
130 AC-AAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCA
*
7476502 ATCCGAGCAAAT
194 ATGCGAGCAAAT
* * * * *
7476514 CTTCGAATCCCATCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAAGTGGTCAGCTTC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAA-TGGTTAGCTTC
* *
7476579 CTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGACATAGAGAAGCGAATTGAA
65 CTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGAA
* * *
7476644 ACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACTCATGCTCGA
130 ACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAA
7476709 TGCGAGCAAAT
195 TGCGAGCAAAT
* *
7476720 CTTCGAACCCCAGCTTCCTGATGAGACACT-AGGAAGTAGGTCGAAGCAATAAAAGGGTTAGCTT
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGA-GAAGCAGGTCGAAGCAAT-AAATGGTTAGCTT
* *
7476784 TCTGATGAGACACAGAGAAGTGGACCCAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGA
64 CCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGA
*
7476849 AACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAGGCTCA
129 AACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCA
* *
7476914 ATGTGAGTAAAT
194 ATGCGAGCAAAT
* ** *
7476926 CTTCGAACCCCAGTTTCCAAATGAGACACTGAGAAGCAGGTCGAAGTAATAAAATGGTTAGCTTC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAAT-AAATGGTTAGCTTC
* * *
7476991 CTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCC
65 CTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCC
7477029 AATGAAAATT
Statistics
Matches: 839, Mismatches: 74, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
203 4 0.00
204 287 0.34
205 131 0.16
206 413 0.49
207 4 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (205 bp):
CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATGGTTAGCTTCC
TGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGAAA
CAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAAT
GCGAGCAAAT
Found at i:7476703 original size:410 final size:410
Alignment explanation
Indices: 7475901--7477028 Score: 1752
Period size: 410 Copynumber: 2.7 Consensus size: 410
7475891 TTAAAAAAAG
* * **
7475901 CTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAAT-AAATTGTTAGCTTC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
* * *
7475965 CTGATGAGACACTGAGAAGTGGACCAAATTCGTC-TTCATGAGGAGATC-CAGAGAA-CGAATTA
66 CTGATGAGACAC-GAGAAGTGGACCCAATTCGTCTTTC-TGATGAGA-CACAGAGAAGCGAATTG
* * *
7476027 AAATAAGTGATGCAGTCATCTTCCTGATAAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTC
128 AAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTC
* *
7476092 AATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTTGAAGCAATAA
193 AATGCGAGCAAATCTTCGAACCCCATCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAA
* **
7476157 ATGGTTAGCTTCCTGATGAGACAGTGAGAAGTGAACCAAATTCGTCTTCCTGAAGAGATCCAGAG
258 ATGGTTAGCTTCCTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGAAGAGATCCAGAG
7476222 AAGCGAATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAA
323 AAGCGAATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAA
7476287 ACTCATGCTCGATGCGAGCAAAT
388 ACTCATGCTCGATGCGAGCAAAT
* *
7476310 CTTTGAACCCCAACTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
7476375 CTGATGAGACAC-AGAAGTGGACCCAATTCGTCTTTCTGATGAGACACAGAGAAGCGAATTGAAA
66 CTGATGAGACACGAGAAGTGGACCCAATTCGTCTTTCTGATGAGACACAGAGAAGCGAATTGAAA
* *
7476439 CGAA-TGATGCGGTCATCTTCTTGATGAGACACTAAGAAGAAGACCAAATCAAACCCAAGCTCAA
131 C-AAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAA
* * * *
7476503 TCCGAGCAAATCTTCGAATCCCATCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAAG
195 TGCGAGCAAATCTTCGAACCCCATCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAA-
* * * *
7476568 TGGTCAGCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGATGAGA-CATAGAG
259 TGGTTAGCTTCCTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGAAGAGATC-CAGAG
*
7476632 AAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAA
323 AAGCGAATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAA
7476697 ACTCATGCTCGATGCGAGCAAAT
388 ACTCATGCTCGATGCGAGCAAAT
* *
7476720 CTTCGAACCCCAGCTTCCTGATGAGACACT-AGGAAGTAGGTCGAAGCAATAAAAGGGTTAGCTT
1 CTTCGAACCCCAGCTTCCTGATGAGACACTGA-GAAGCAGGTCGAAGCAATAAAAAGGTTAGCTT
* *
7476784 TCTGATGAGACACAGAGAAGTGGACCCAATTCGTCTTCCTGATGAGACACAGAGAAGCGAATTGA
65 CCTGATGAGACAC-GAGAAGTGGACCCAATTCGTCTTTCTGATGAGACACAGAGAAGCGAATTGA
*
7476849 AACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAGGCTCA
129 AACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCA
* * ** *
7476914 ATGTGAGTAAATCTTCGAACCCCAGT-TTCCAAATGAGACACTGAGAAGCAGGTCGAAGTAATAA
194 ATGCGAGCAAATCTTCGAACCCCA-TCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAAT-A
*
7476978 AATGGTTAGCTTCCTGATGAGATACAGAGAAGTGAACCAAATCCGTCTTCC
257 AATGGTTAGCTTCCTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCC
7477029 AATGAAAATT
Statistics
Matches: 657, Mismatches: 49, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
407 1 0.00
408 33 0.05
409 174 0.26
410 238 0.36
411 2 0.00
412 205 0.31
413 4 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (410 bp):
CTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTC
CTGATGAGACACGAGAAGTGGACCCAATTCGTCTTTCTGATGAGACACAGAGAAGCGAATTGAAA
CAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACCCAAGCTCAAT
GCGAGCAAATCTTCGAACCCCATCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAATG
GTTAGCTTCCTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGAAGAGATCCAGAGAAG
CGAATTAAAACAAGTGATGCGGTCATCTTCCTGATGAGACACTGAGAAGAAGACCAAATCAAACT
CATGCTCGATGCGAGCAAAT
Found at i:7477466 original size:17 final size:17
Alignment explanation
Indices: 7477438--7477516 Score: 77
Period size: 17 Copynumber: 4.6 Consensus size: 17
7477428 CTAACTTTTA
*
7477438 ATTTTAAAATTTTAATTT
1 ATTTT-AAATTTAAATTT
*
7477456 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
*
7477473 ATTTTAAATTTAAATTC
1 ATTTTAAATTTAAATTT
* ***
7477490 GTTTTGGGTTTAAATTT
1 ATTTTAAATTTAAATTT
*
7477507 ATTTTGAATT
1 ATTTTAAATT
7477517 AAAAATTGTT
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
17 45 0.90
18 5 0.10
ACGTcount: A:0.33, C:0.01, G:0.08, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:7479344 original size:188 final size:188
Alignment explanation
Indices: 7479027--7479402 Score: 752
Period size: 188 Copynumber: 2.0 Consensus size: 188
7479017 GCATTTTTTT
7479027 AGAAATGGTATATTTCTGCATTTGGTCCTTCTGTATTTTTTATTGTTTCAATTAAGTCCTTTTTG
1 AGAAATGGTATATTTCTGCATTTGGTCCTTCTGTATTTTTTATTGTTTCAATTAAGTCCTTTTTG
7479092 TACTTTTAATTAATTTTAAATTGGCCAAGTAATTTTAATTTCTTTTCAATTTAGTCCCTTGACTT
66 TACTTTTAATTAATTTTAAATTGGCCAAGTAATTTTAATTTCTTTTCAATTTAGTCCCTTGACTT
7479157 TTTGAATGCATCAGAGGCTGCCACGTGTCAGAAATTTGGCTTATTTACGTAATTGGTC
131 TTTGAATGCATCAGAGGCTGCCACGTGTCAGAAATTTGGCTTATTTACGTAATTGGTC
7479215 AGAAATGGTATATTTCTGCATTTGGTCCTTCTGTATTTTTTATTGTTTCAATTAAGTCCTTTTTG
1 AGAAATGGTATATTTCTGCATTTGGTCCTTCTGTATTTTTTATTGTTTCAATTAAGTCCTTTTTG
7479280 TACTTTTAATTAATTTTAAATTGGCCAAGTAATTTTAATTTCTTTTCAATTTAGTCCCTTGACTT
66 TACTTTTAATTAATTTTAAATTGGCCAAGTAATTTTAATTTCTTTTCAATTTAGTCCCTTGACTT
7479345 TTTGAATGCATCAGAGGCTGCCACGTGTCAGAAATTTGGCTTATTTACGTAATTGGTC
131 TTTGAATGCATCAGAGGCTGCCACGTGTCAGAAATTTGGCTTATTTACGTAATTGGTC
7479403 CCTTTTATTT
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
188 188 1.00
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.46
Consensus pattern (188 bp):
AGAAATGGTATATTTCTGCATTTGGTCCTTCTGTATTTTTTATTGTTTCAATTAAGTCCTTTTTG
TACTTTTAATTAATTTTAAATTGGCCAAGTAATTTTAATTTCTTTTCAATTTAGTCCCTTGACTT
TTTGAATGCATCAGAGGCTGCCACGTGTCAGAAATTTGGCTTATTTACGTAATTGGTC
Found at i:7479688 original size:58 final size:58
Alignment explanation
Indices: 7479596--7479816 Score: 245
Period size: 58 Copynumber: 3.8 Consensus size: 58
7479586 GTATTTTGAC
* * *
7479596 CCCCGAACTTCTCTAAAATTACATTTTTGA-CCCTAAAACTTCCCAAATTACATTTTTG
1 CCCCAAACTT-TCAAAAATTACATTTTTGACCCCTAAAACTTCCAAAATTACATTTTTG
* *
7479654 CCCCAAAACTTTCAAAAATTCCATTTTT-ACCCCTAAAACTTTCAAAATTACATTTTTG
1 CCCC-AAACTTTCAAAAATTACATTTTTGACCCCTAAAACTTCCAAAATTACATTTTTG
* * * * *
7479712 CCCCCAAACTTCCAAAAATTCCATTTTTGACTCCTAAATC-GCCAAAAGTTACATTTTTG
1 -CCCCAAACTTTCAAAAATTACATTTTTGACCCCTAAAACTTCCAAAA-TTACATTTTTG
* * *
7479771 TCCTCAAATTTTCAAAAATTACA-TTTTGACCCC-GAAACTTCCAAAA
1 -CCCCAAACTTTCAAAAATTACATTTTTGACCCCTAAAACTTCCAAAA
7479817 ATTATCGTTT
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
57 4 0.03
58 87 0.63
59 47 0.34
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (58 bp):
CCCCAAACTTTCAAAAATTACATTTTTGACCCCTAAAACTTCCAAAATTACATTTTTG
Found at i:7479817 original size:29 final size:30
Alignment explanation
Indices: 7479565--7479820 Score: 215
Period size: 29 Copynumber: 8.7 Consensus size: 30
7479555 GCTCTAAAGG
* **
7479565 CCCCTAAACTGTCCAAAAATTGTA-TTTTGA
1 CCCCAAAACT-TCCAAAAATTACATTTTTGA
** *
7479595 CCCCCGAACTTCTCTAAAATTACATTTTTGA
1 CCCCAAAACTTC-CAAAAATTACATTTTTGA
* *
7479626 CCCTAAAACTTCC-CAAATTACATTTTTG-
1 CCCCAAAACTTCCAAAAATTACATTTTTGA
* *
7479654 CCCCAAAACTTTCAAAAATTCCATTTTT-A
1 CCCCAAAACTTCCAAAAATTACATTTTTGA
*
7479683 CCCCTAAAACTTTC-AAAATTACATTTTTG-
1 CCCC-AAAACTTCCAAAAATTACATTTTTGA
* *
7479712 CCCCCAAACTTCCAAAAATTCCATTTTTGA
1 CCCCAAAACTTCCAAAAATTACATTTTTGA
* * * * *
7479742 CTCCTAAA-TCGCCAAAAGTTACATTTTTGT
1 CCCCAAAACT-TCCAAAAATTACATTTTTGA
* * *
7479772 CCTC-AAATTTTCAAAAATTACA-TTTTGA
1 CCCCAAAACTTCCAAAAATTACATTTTTGA
*
7479800 CCCCGAAACTTCCAAAAATTA
1 CCCCAAAACTTCCAAAAATTA
7479821 TCGTTTTACC
Statistics
Matches: 183, Mismatches: 32, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
28 26 0.14
29 91 0.50
30 51 0.28
31 15 0.08
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (30 bp):
CCCCAAAACTTCCAAAAATTACATTTTTGA
Found at i:7479833 original size:117 final size:116
Alignment explanation
Indices: 7479565--7479858 Score: 294
Period size: 117 Copynumber: 2.5 Consensus size: 116
7479555 GCTCTAAAGG
* * * * *
7479565 CCCCTAAACTGTCCAAAAATTGT-ATTTTGACCCCCGAACTTCTCTAAAATTACATTTTTGACCC
1 CCCCAAAACT-TCCAAAAATTATCATTTT-ACCCCCAAACTTC-CAAAAATTCCATTTTTGACCC
* * * *
7479629 TAAAACTTCCCAAATTACATTTTTGCCCCAAAACTTTCAAAAATTCCATTTTTA
63 TAAAACTGCCAAAATTACATTTTTGCCCCAAAACTTTCAAAAATTACATTTTGA
* *
7479683 CCCCTAAAACTTTC-AAAATTA-CATTTTTGCCCCCAAACTTCCAAAAATTCCATTTTTGACTCC
1 CCCC-AAAACTTCCAAAAATTATCA-TTTTACCCCCAAACTTCCAAAAATTCCATTTTTGAC-CC
* * *
7479746 TAAATC-GCCAAAAGTTACATTTTTGTCCTC-AAATTTTCAAAAATTACATTTTGA
63 TAAAACTGCCAAAA-TTACATTTTTG-CCCCAAAACTTTCAAAAATTACATTTTGA
* * * * *
7479800 CCCCGAAACTTCCAAAAATTATCGTTTTACCCCCAAA-TGTCTAAAAACTCTATTTTTGA
1 CCCCAAAACTTCCAAAAATTATCATTTTACCCCCAAACT-TCCAAAAATTCCATTTTTGA
7479859 TCCCAATTTT
Statistics
Matches: 146, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
116 30 0.21
117 97 0.66
118 14 0.10
119 5 0.03
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (116 bp):
CCCCAAAACTTCCAAAAATTATCATTTTACCCCCAAACTTCCAAAAATTCCATTTTTGACCCTAA
AACTGCCAAAATTACATTTTTGCCCCAAAACTTTCAAAAATTACATTTTGA
Found at i:7482773 original size:25 final size:24
Alignment explanation
Indices: 7482686--7482778 Score: 98
Period size: 24 Copynumber: 3.8 Consensus size: 24
7482676 TTAAACTCTG
*
7482686 TTTGGGCTCGAATGAGCTAA-CTTA
1 TTTGGGCTCGTATGAGCTAATC-TA
* * *
7482710 TTTGGGCTCGTAAGAGTTAACCTA
1 TTTGGGCTCGTATGAGCTAATCTA
* * *
7482734 TCTGAGCTCGTATGAGCTAATTCTG
1 TTTGGGCTCGTATGAGCTAA-TCTA
7482759 TTTGGGCTCGTATGAGCTAA
1 TTTGGGCTCGTATGAGCTAA
7482779 ATTCCTGGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
24 35 0.62
25 21 0.38
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (24 bp):
TTTGGGCTCGTATGAGCTAATCTA
Found at i:7483379 original size:24 final size:24
Alignment explanation
Indices: 7483343--7483397 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
7483333 GATGTAAGAT
* *
7483343 AAGTATCGGTAGTTCTACTCATAG
1 AAGTATCGATAGTTCTACTAATAG
*
7483367 AATTATCGATAGTTCTACTAATAG
1 AAGTATCGATAGTTCTACTAATAG
7483391 AAGTATC
1 AAGTATC
7483398 AGTAGTCTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (24 bp):
AAGTATCGATAGTTCTACTAATAG
Found at i:7489854 original size:24 final size:24
Alignment explanation
Indices: 7489825--7489914 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
7489815 CAGACAATAT
* *
7489825 TTAGCTCATACAAGCCCAAAATGG
1 TTAGCTCTTACGAGCCCAAAATGG
*
7489849 TTAGCTCTTACGAGCCCAAAACGG
1 TTAGCTCTTACGAGCCCAAAATGG
* **
7489873 TTAGCTCTTACGAGCCCAGAATTA
1 TTAGCTCTTACGAGCCCAAAATGG
7489897 TTAGCTCTTACGAGCCCA
1 TTAGCTCTTACGAGCCCA
7489915 GAATTAGAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCCAAAATGG
Found at i:7500248 original size:31 final size:30
Alignment explanation
Indices: 7500201--7500363 Score: 99
Period size: 31 Copynumber: 5.4 Consensus size: 30
7500191 TTAATATAAC
*
7500201 ATTTGGTACCTGAACTTGACAGTTTTTCCTA
1 ATTTGGTACCTAAACTTGACA-TTTTTCCTA
* *
7500232 ATTTAGTACCTAAACTT----TTTTTGACCCA
1 ATTTGGTACCTAAACTTGACATTTTT--CCTA
* * *
7500260 ATTTGGTACTTGAACTTGACACTTTCTCCTA
1 ATTTGGTACCTAAACTTGACA-TTTTTCCTA
*
7500291 ATTTGGTACCTAAACTT----TTTTTGGACCCA
1 ATTTGGTACCTAAACTTGACATTTTT---CCTA
* * * *
7500320 ATTTGGTACTTGAATTTGGCATTTTTTCCTA
1 ATTTGGTACCTAAACTTGACA-TTTTTCCTA
7500351 ATTTGGTACCTAA
1 ATTTGGTACCTAA
7500364 GCTTTTTTTA
Statistics
Matches: 99, Mismatches: 18, Indels: 30
0.67 0.12 0.20
Matches are distributed among these distances:
26 9 0.09
28 17 0.17
29 17 0.17
31 47 0.47
33 4 0.04
34 5 0.05
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (30 bp):
ATTTGGTACCTAAACTTGACATTTTTCCTA
Found at i:7500350 original size:60 final size:59
Alignment explanation
Indices: 7500201--7500388 Score: 268
Period size: 60 Copynumber: 3.2 Consensus size: 59
7500191 TTAATATAAC
* * *
7500201 ATTTGGTACCTGAACTTGACAGTTTTTCCTAATTTAGTACCTAAACTTTTTTTGACCCA
1 ATTTGGTACTTGAACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTGACCCA
*
7500260 ATTTGGTACTTGAACTTGACACTTTCTCCTAATTTGGTACCTAAACTTTTTTTGGACCCA
1 ATTTGGTACTTGAACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTT-GACCCA
* * * * **
7500320 ATTTGGTACTTGAATTTGGCATTTTTTCCTAATTTGGTACCTAAGCTTTTTTTAGATTCA
1 ATTTGGTACTTGAACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTT-GACCCA
7500380 ATTTGGTAC
1 ATTTGGTAC
7500389 CTAAATTTAT
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
59 49 0.42
60 67 0.58
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (59 bp):
ATTTGGTACTTGAACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTGACCCA
Found at i:7500575 original size:31 final size:31
Alignment explanation
Indices: 7500538--7500731 Score: 145
Period size: 31 Copynumber: 6.4 Consensus size: 31
7500528 TTAAAAAAAA
7500538 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
* * **
7500569 TCAGGTATCAAATT-GGATCCCAA-A---AAGT
1 TTAGGTACCAAATTAGGA--AAAAGAGTCAAGT
* * ** *
7500597 TTAAGTACCAACTTAAAAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
*
7500628 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
**
7500659 TT-GAGTACCAAATT-GGACAAAA-A-AAAAGT
1 TTAG-GTACCAAATTAGGA-AAAAGAGTCAAGT
* *
7500688 TTAGGTACCAAATTAAGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
* *
7500719 TCAGGTACTAAAT
1 TTAGGTACCAAAT
7500732 GTTATATTAA
Statistics
Matches: 124, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
27 2 0.02
28 14 0.11
29 21 0.17
30 10 0.08
31 75 0.60
32 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.25
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
Found at i:7504301 original size:28 final size:28
Alignment explanation
Indices: 7504270--7504325 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7504260 AGAGTCTTTC
7504270 GTGTTGTGCCTAATGAATGTCATAACCA
1 GTGTTGTGCCTAATGAATGTCATAACCA
7504298 GTGTTGTGCCTAATGAATGTCATAACCA
1 GTGTTGTGCCTAATGAATGTCATAACCA
7504326 AAAAAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (28 bp):
GTGTTGTGCCTAATGAATGTCATAACCA
Found at i:7507936 original size:21 final size:20
Alignment explanation
Indices: 7507910--7507956 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
7507900 TAACCTTTGT
7507910 CAAAATTTCTAAAAGATTTAC
1 CAAAATTTCTAAAA-ATTTAC
* *
7507931 CAAAATTTTTAAAAATTTAT
1 CAAAATTTCTAAAAATTTAC
7507951 CAAAAT
1 CAAAAT
7507957 ATTTGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (20 bp):
CAAAATTTCTAAAAATTTAC
Found at i:7508145 original size:20 final size:21
Alignment explanation
Indices: 7508122--7508197 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 21
7508112 AGCTTTCCCC
7508122 AAAAT-TTCTAAGGATTTACT
1 AAAATATTCTAAGGATTTACT
* * *
7508142 AAAATGTT-TAAGTATTTACC
1 AAAATATTCTAAGGATTTACT
*
7508162 AATAT-TTCTAAGGATTTACT
1 AAAATATTCTAAGGATTTACT
*
7508182 TAAATATTC-AAGGATT
1 AAAATATTCTAAGGATT
7508198 ATCAAAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 2 0.04
20 39 0.85
21 5 0.11
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (21 bp):
AAAATATTCTAAGGATTTACT
Found at i:7508238 original size:20 final size:20
Alignment explanation
Indices: 7508213--7508267 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
7508203 AATATATGAG
7508213 AATTTACCAATATTTCTAAA
1 AATTTACCAATATTTCTAAA
* * *
7508233 AATTTATCAAAATATCTAAA
1 AATTTACCAATATTTCTAAA
*
7508253 GATTTACCAATATTT
1 AATTTACCAATATTT
7508268 TTAATTATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.40
Consensus pattern (20 bp):
AATTTACCAATATTTCTAAA
Found at i:7509442 original size:18 final size:18
Alignment explanation
Indices: 7509416--7509455 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7509406 ATTACTTCTC
* *
7509416 AAAAGTATTTTTGAGATA
1 AAAAATATTTTTGAAATA
7509434 AAAAATATTTTTGAAATA
1 AAAAATATTTTTGAAATA
7509452 AAAA
1 AAAA
7509456 CATTACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (18 bp):
AAAAATATTTTTGAAATA
Found at i:7511357 original size:120 final size:119
Alignment explanation
Indices: 7511137--7511375 Score: 379
Period size: 120 Copynumber: 2.0 Consensus size: 119
7511127 CAGGGACTAA
* *
7511137 GGGATGGACAAGGTTGTCTCATCTAATATTATGTGATTTTAGGATTAAGTCTAAATGATTCTGTA
1 GGGATGGACAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTAAGTCTAAATGATTCTGTA
* * *
7511202 TTCATTGCTTATTAATAGATAACCGGTATATTTGTATATCTTCAGAAATGGAAT
66 TTCATTGCTTATTAATAGATAACCGGAAGATTTGTATATCTTCACAAATGGAAT
* * *
7511256 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTTGAGTGTAAATGATTCTGT
1 GGGATGGACAAGGTCGTCTCATCTAATATTATGTAATTTTAGGA-TTAAGTCTAAATGATTCTGT
* *
7511321 ATTCATTGCTTATTATTAGATAACGGGAAGATTTGTATATCTTCACAAATGGAAT
65 ATTCATTGCTTATTAATAGATAACCGGAAGATTTGTATATCTTCACAAATGGAAT
7511376 TTATTCTTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
119 41 0.38
120 68 0.62
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (119 bp):
GGGATGGACAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTAAGTCTAAATGATTCTGTA
TTCATTGCTTATTAATAGATAACCGGAAGATTTGTATATCTTCACAAATGGAAT
Found at i:7517349 original size:59 final size:57
Alignment explanation
Indices: 7517224--7517379 Score: 174
Period size: 58 Copynumber: 2.7 Consensus size: 57
7517214 ATTGGCATCA
* *
7517224 AAAATATAAATTAATTTTTTTGGGGTTTT-GACACCTATTGGCCAACACTAAAAACAC
1 AAAATAAAAAATAATTTTTTT-GGGTTTTGGACACCTATTGGCCAACACTAAAAACAC
** *
7517281 AAAATAAAAAAGTAATTTTTTTGGGTTTTGGACACCTATTGGCTGACATTAAAAA-ATGC
1 AAAATAAAAAA-TAATTTTTTTGGGTTTTGGACACCTATTGGCCAACACTAAAAACA--C
* * *
7517340 AGAATAAAAAA-AATATTTTTTGGGTTTTGAACATCTATTG
1 AAAATAAAAAATAAT-TTTTTTGGGTTTTGGACACCTATTG
7517380 ATCGGCACCA
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
57 20 0.23
58 55 0.64
59 11 0.13
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (57 bp):
AAAATAAAAAATAATTTTTTTGGGTTTTGGACACCTATTGGCCAACACTAAAAACAC
Found at i:7519131 original size:7 final size:7
Alignment explanation
Indices: 7519119--7519148 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7519109 AAAATGGAAT
7519119 TTAAAAA
1 TTAAAAA
7519126 TTAAAAA
1 TTAAAAA
7519133 TATAAAAA
1 T-TAAAAA
7519141 TTAAAAA
1 TTAAAAA
7519148 T
1 T
7519149 GATCAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
TTAAAAA
Found at i:7519158 original size:15 final size:15
Alignment explanation
Indices: 7519120--7519148 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7519110 AAATGGAATT
7519120 TAAAAATTAAAAATA
1 TAAAAATTAAAAATA
7519135 TAAAAATTAAAAAT
1 TAAAAATTAAAAAT
7519149 GATCAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAAAATTAAAAATA
Found at i:7529971 original size:28 final size:28
Alignment explanation
Indices: 7529932--7529993 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
7529922 TATTTTTTTC
7529932 ATCT-AAACCTCGAA-CCTAAAACCAATA
1 ATCTAAAACCTCGAACCCTAAAACCAA-A
*
7529959 ATCTAAAACCTCGAACCCTAAACCCAAA
1 ATCTAAAACCTCGAACCCTAAAACCAAA
*
7529987 TTCTAAA
1 ATCTAAA
7529994 CCCCGAGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 4 0.13
28 17 0.55
29 10 0.32
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (28 bp):
ATCTAAAACCTCGAACCCTAAAACCAAA
Found at i:7533269 original size:2 final size:2
Alignment explanation
Indices: 7533262--7533308 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7533252 TATAGATGAG
7533262 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7533304 TC TC T
1 TC TC T
7533309 TATAATTTGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7536541 original size:18 final size:19
Alignment explanation
Indices: 7536502--7536543 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 19
7536492 ATGGAAGTAA
7536502 TAAAATATGCATAATAAAAT
1 TAAAATAT-CATAATAAAAT
7536522 TAAAATAT-ATAA-AAATAT
1 TAAAATATCATAATAAA-AT
7536540 TAAA
1 TAAA
7536544 GTAGAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.14
18 10 0.48
20 8 0.38
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAATATCATAATAAAAT
Found at i:7545385 original size:50 final size:50
Alignment explanation
Indices: 7545317--7545720 Score: 306
Period size: 50 Copynumber: 8.2 Consensus size: 50
7545307 GATATGGAGT
* *
7545317 GAAAGGTTTAAGTCGCAACGACGAACCTT-TAACCTTAGAAGACATGAAGG
1 GAAAGATTTAAGCCGCAACGACGAACCTTGT-ACCTTAGAAGACATGAAGG
* * ** * * * *
7545367 GAAAGATCTAAGCTGCAACGGTGAATCTAGTACC--ACGAAGATATGGAGG
1 GAAAGATTTAAGCCGCAACGACGAACCTTGTACCTTA-GAAGACATGAAGG
* * ** *
7545416 GAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTTAGAAGAGATGAAGG
1 GAAAGATTTAAGCCGCAACGACGAACCTTGTACCTTAGAAGACATGAAGG
* * * * ** * *
7545466 GAAAGATTTAACCCGCAACGGCGAATCTAGTACCACA-AAGATATGGAGG
1 GAAAGATTTAAGCCGCAACGACGAACCTTGTACCTTAGAAGACATGAAGG
* *
7545515 GAAAGGTTTAAGCCGCAAC-AGCGAACCTTGTACCTTAGAAGACATAAAGG
1 GAAAGATTTAAGCCGCAACGA-CGAACCTTGTACCTTAGAAGACATGAAGG
* * *
7545565 GAAA-ATTTTAAGCCGCAAC-AGCGAACCTTGTACCTCAAAAGACATAAAGG
1 GAAAGA-TTTAAGCCGCAACGA-CGAACCTTGTACCTTAGAAGACATGAAGG
* ** * * * * *
7545615 GAAA-ATTTTAAGTCGCAACGGTGAATCTAGTACCTCA-AAGAGATGGAGG
1 GAAAGA-TTTAAGCCGCAACGACGAACCTTGTACCTTAGAAGACATGAAGG
* * ** *
7545664 GAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTTAGAA-ACATGTAGG
1 GAAAGATTTAAGCCGCAACGACGAACCTTGTACCTTAGAAGACATGAAGG
*
7545713 GAAGGATT
1 GAAAGATT
7545721 GAGGCTGCAA
Statistics
Matches: 287, Mismatches: 57, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
48 1 0.00
49 132 0.46
50 152 0.53
51 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (50 bp):
GAAAGATTTAAGCCGCAACGACGAACCTTGTACCTTAGAAGACATGAAGG
Found at i:7545467 original size:99 final size:99
Alignment explanation
Indices: 7545296--7545697 Score: 459
Period size: 99 Copynumber: 4.1 Consensus size: 99
7545286 TACAGGTTTC
* * *
7545296 AGTACCACGAAGATATGGAGTGAAAGGTTTAAGTCGCAACGACGAACCTT-TAACCTTAGAAGAC
1 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGT-ACCTTAGAAGAC
* * * *
7545360 ATGAAGGGAAAGATCTAAGCTGCAACGGTGAATCT
65 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCT
* * *
7545395 AGTACCACGAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTTAGAAGAGA
1 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTTAGAAGACA
* *
7545460 TGAAGGGAAAGATTTAACCCGCAACGGCGAATCT
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAACCT
* *
7545494 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTTAGAAGACA
1 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTTAGAAGACA
* *
7545559 TAAAGGGAAA-ATTTTAAGCCGCAACAGCGAACCT
66 TGAAGGGAAAGA-TTTAAGCCGCAACGGCGAACCT
* * * ** ** * * * * *
7545593 TGTACCTCAAAAGACATAAAGGGAAAATTTTAAGTCGCAACGGTGAATCTAGTACCTCA-AAGAG
1 AGTACCAC-AAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTTAGAAGAC
* * * *
7545657 ATGGAGGGAAAGGTTTAAGTCGCAACGGTGAACCT
65 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCT
*
7545692 TGTACC
1 AGTACC
7545698 TTAGAAACAT
Statistics
Matches: 262, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
98 1 0.00
99 221 0.84
100 40 0.15
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (99 bp):
AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTTAGAAGACA
TGAAGGGAAAGATTTAAGCCGCAACGGCGAACCT
Found at i:7545566 original size:149 final size:148
Alignment explanation
Indices: 7545413--7545707 Score: 412
Period size: 149 Copynumber: 2.0 Consensus size: 148
7545403 GAAGATATGG
* * * * * * * *
7545413 AGGGAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTTAGAAGAGATGAAGGGAAAGA-TTTAA
1 AGGGAAAAGTTTAAGCCGCAACAGCGAACCTTGTACCTCAAAAGACATAAAGGGAAA-ATTTTAA
*
7545477 CCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGCCGCAACAGCGAACC
65 CCCGCAACGGCGAATCTAGTACCACAAAGAGATGGAGGGAAAGGTTTAAGCCGCAACAGCGAACC
7545542 TTGTACCTTAGAAGACATAA
130 TTGTACCTTAGAA-ACATAA
* *
7545562 AGGGAAAATTTTAAGCCGCAACAGCGAACCTTGTACCTCAAAAGACATAAAGGGAAAATTTTAAG
1 AGGGAAAAGTTTAAGCCGCAACAGCGAACCTTGTACCTCAAAAGACATAAAGGGAAAATTTTAAC
* * * * * *
7545627 TCGCAACGGTGAATCTAGTACCTCAAAGAGATGGAGGGAAAGGTTTAAGTCGCAACGGTGAACCT
66 CCGCAACGGCGAATCTAGTACCACAAAGAGATGGAGGGAAAGGTTTAAGCCGCAACAGCGAACCT
7545692 TGTACCTTAGAAACAT
131 TGTACCTTAGAAACAT
7545708 GTAGGGAAGG
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
148 5 0.04
149 123 0.96
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (148 bp):
AGGGAAAAGTTTAAGCCGCAACAGCGAACCTTGTACCTCAAAAGACATAAAGGGAAAATTTTAAC
CCGCAACGGCGAATCTAGTACCACAAAGAGATGGAGGGAAAGGTTTAAGCCGCAACAGCGAACCT
TGTACCTTAGAAACATAA
Found at i:7545813 original size:49 final size:49
Alignment explanation
Indices: 7545710--7545844 Score: 155
Period size: 49 Copynumber: 2.8 Consensus size: 49
7545700 AGAAACATGT
* * *
7545710 AGGG-AAGGATTGAGGCTGCAACGGTGAATCCGATACCATGAAGACGCGA
1 AGGGAAAGG-TTGAGGCCGCAACGGTAAACCCGATACCATGAAGACGCGA
* ***
7545759 TGGGAAAGGTTGAGGCCGCAACGGTAAACCCGATACCATGAAGATTTGA
1 AGGGAAAGGTTGAGGCCGCAACGGTAAACCCGATACCATGAAGACGCGA
* * * *
7545808 AGGGAAAGGTTGAGCCCACAATGGAAAACCCGATACC
1 AGGGAAAGGTTGAGGCCGCAACGGTAAACCCGATACC
7545845 TTAGGAAAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 69 0.95
50 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.31, T:0.15
Consensus pattern (49 bp):
AGGGAAAGGTTGAGGCCGCAACGGTAAACCCGATACCATGAAGACGCGA
Found at i:7546209 original size:45 final size:46
Alignment explanation
Indices: 7546159--7546260 Score: 143
Period size: 46 Copynumber: 2.2 Consensus size: 46
7546149 AGGCAGATTA
*
7546159 AAGCCACCATCCAATC-TTTACCCCTAAGTCAACAAGGGAAAATTG
1 AAGCCACCATCCAATCTTTTACCCCTAAATCAACAAGGGAAAATTG
* * * *
7546204 AAGCCACAATCCAATCTTTTACCCCTAAATCAAGATGGGCAAATTG
1 AAGCCACCATCCAATCTTTTACCCCTAAATCAACAAGGGAAAATTG
*
7546250 AAGCCAACATC
1 AAGCCACCATC
7546261 TCACAGAAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 15 0.31
46 34 0.69
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.21
Consensus pattern (46 bp):
AAGCCACCATCCAATCTTTTACCCCTAAATCAACAAGGGAAAATTG
Found at i:7547361 original size:32 final size:30
Alignment explanation
Indices: 7547313--7547375 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 30
7547303 TTATTTTAAA
*
7547313 TATATATTAATATATTTACTTAT-TATTTAT
1 TATATACTAATATATTTA-TTATCTATTTAT
*
7547343 TATATACTAATATTTATTTATTGTCTATTTAT
1 TATATACTAATA--TATTTATTATCTATTTAT
7547375 T
1 T
7547376 GTTTTCTCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 11 0.39
31 3 0.11
32 14 0.50
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (30 bp):
TATATACTAATATATTTATTATCTATTTAT
Found at i:7556968 original size:17 final size:17
Alignment explanation
Indices: 7556948--7556987 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7556938 TTGGACATGA
*
7556948 TATTTTTTTATTTATTT
1 TATTTTTTTAGTTATTT
* *
7556965 TATTGTTTTGGTTATTT
1 TATTTTTTTAGTTATTT
7556982 TATTTT
1 TATTTT
7556988 CCTTTATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (17 bp):
TATTTTTTTAGTTATTT
Found at i:7557028 original size:10 final size:10
Alignment explanation
Indices: 7557015--7557039 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7557005 GCTTTTGAAA
7557015 TTTTTTTCTT
1 TTTTTTTCTT
7557025 TTTTTTTCTT
1 TTTTTTTCTT
7557035 TTTTT
1 TTTTT
7557040 ACTTTGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:7564397 original size:19 final size:21
Alignment explanation
Indices: 7564361--7564408 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 21
7564351 AATCATCTTC
*
7564361 AAAATATGAAAAACATAAGAA
1 AAAATATGAAAAACATAACAA
*
7564382 AAAATAT-ACAAA-ATAAC-A
1 AAAATATGAAAAACATAACAA
7564400 AAAATATGA
1 AAAATATGA
7564409 TTTTCAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.33
19 5 0.21
20 4 0.17
21 7 0.29
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (21 bp):
AAAATATGAAAAACATAACAA
Found at i:7568176 original size:17 final size:18
Alignment explanation
Indices: 7568156--7568191 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7568146 GTTACCCAAT
7568156 TCAATTAG-TTAATTTGA
1 TCAATTAGATTAATTTGA
*
7568173 TCAATTCGATTAATTTGA
1 TCAATTAGATTAATTTGA
7568191 T
1 T
7568192 TAAATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.47
Consensus pattern (18 bp):
TCAATTAGATTAATTTGA
Found at i:7568374 original size:30 final size:30
Alignment explanation
Indices: 7568336--7568400 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
7568326 GTTTCTGATC
7568336 CAAT-CAGTTGTTTAATTCGGTTCAAACTA
1 CAATGCAGTTGTTTAATTCGGTTCAAACTA
*
7568365 CAATGCAGTTGTTTAATTCGGTTCGAACTA
1 CAATGCAGTTGTTTAATTCGGTTCAAACTA
7568395 CAATGC
1 CAATGC
7568401 TCTTGCTGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (30 bp):
CAATGCAGTTGTTTAATTCGGTTCAAACTA
Found at i:7572859 original size:20 final size:20
Alignment explanation
Indices: 7572818--7572859 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7572808 GCATTTTGGA
*
7572818 TTATTGTAAGCCAATTGTTT
1 TTATTGTAAGCCAATTGATT
*
7572838 TTATATGTAAGTCAA-TGATT
1 TTAT-TGTAAGCCAATTGATT
7572858 TT
1 TT
7572860 TTAGCTTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (20 bp):
TTATTGTAAGCCAATTGATT
Found at i:7573236 original size:21 final size:20
Alignment explanation
Indices: 7573215--7573253 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7573205 ACTGGCATAT
*
7573215 TTAATTTAATTTATTAAATA
1 TTAATTTAATTTAATAAATA
* *
7573235 TTATTTTTATTTAATAAAT
1 TTAATTTAATTTAATAAAT
7573254 TATGATTAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTAATTTAATTTAATAAATA
Found at i:7577053 original size:130 final size:130
Alignment explanation
Indices: 7576864--7577125 Score: 488
Period size: 130 Copynumber: 2.0 Consensus size: 130
7576854 AAAACGTTTA
* *
7576864 AACATATCAAAAGTCTTGTCTTTAGTTTTCATGAGATACACATAAGTAAATCTAGAAAAGTCATC
1 AACATATCAAAAGTCTTGTCTTTACTTTTCATGAGATACACACAAGTAAATCTAGAAAAGTCATC
7576929 CATAAAAGTGATAAAATATCGTTTTCCACCTCTTGTTAAAGTTCCATTCAATTCACAAACATCCG
66 CATAAAAGTGATAAAATATCGTTTTCCACCTCTTGTTAAAGTTCCATTCAATTCACAAACATCCG
7576994 AACATATCAAAAGTCTTGTCTTTACTTTTCATGAGATACACACAAGTAAATCTAGAAAAGTCATC
1 AACATATCAAAAGTCTTGTCTTTACTTTTCATGAGATACACACAAGTAAATCTAGAAAAGTCATC
* *
7577059 TATAAAAGTGATAAAATATCGTTTTCCACCTCTTGTTAAAGTTCCATTTAATTCACAAACATCCG
66 CATAAAAGTGATAAAATATCGTTTTCCACCTCTTGTTAAAGTTCCATTCAATTCACAAACATCCG
7577124 AA
1 AA
7577126 TGAATTAAAT
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 128 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (130 bp):
AACATATCAAAAGTCTTGTCTTTACTTTTCATGAGATACACACAAGTAAATCTAGAAAAGTCATC
CATAAAAGTGATAAAATATCGTTTTCCACCTCTTGTTAAAGTTCCATTCAATTCACAAACATCCG
Found at i:7579024 original size:39 final size:41
Alignment explanation
Indices: 7578964--7579062 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 41
7578954 TATGCACTCA
*
7578964 ATGGACACCTTGT-GAAGAGTCACAA-CCCTTTCATATTAG
1 ATGGACACCTTTTGGAAGAGTCACAATCCCTTTCATATTAG
* *
7579003 ATGGACACCTTTTGGAA-AGTCACAATCCTTTTCATATTGG
1 ATGGACACCTTTTGGAAGAGTCACAATCCCTTTCATATTAG
7579043 ATGGACACCTTTTGGAAGAG
1 ATGGACACCTTTTGGAAGAG
7579063 ATTTGTCCCA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
39 20 0.37
40 32 0.59
41 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (41 bp):
ATGGACACCTTTTGGAAGAGTCACAATCCCTTTCATATTAG
Found at i:7580988 original size:18 final size:18
Alignment explanation
Indices: 7580962--7580997 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7580952 TGATGCTCAA
*
7580962 GGGAATGAATCTGGGTAT
1 GGGAATGAACCTGGGTAT
*
7580980 GGGAGTGAACCTGGGTAT
1 GGGAATGAACCTGGGTAT
7580998 CGTGGGGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.08, G:0.42, T:0.25
Consensus pattern (18 bp):
GGGAATGAACCTGGGTAT
Found at i:7588819 original size:2 final size:2
Alignment explanation
Indices: 7588808--7588842 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7588798 GGCGTACTCC
7588808 GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7588843 AGTGAAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7592301 original size:18 final size:17
Alignment explanation
Indices: 7592278--7592320 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
7592268 ATGTTTTTAA
* *
7592278 AAAAATATTAATTATTAT
1 AAAAATATT-AGTATAAT
7592296 AAAAATTATTAGTATAAT
1 AAAAA-TATTAGTATAAT
7592314 AAAAATA
1 AAAAATA
7592321 ATTTTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 16 0.73
19 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
AAAAATATTAGTATAAT
Found at i:7606939 original size:23 final size:23
Alignment explanation
Indices: 7606913--7606961 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7606903 AAAAGTTGTT
* * *
7606913 TTTTAAATTTTTTTTATTTTTTA
1 TTTTAAATTATTTTAACTTTTTA
*
7606936 TTTTATATTATTTTAACTTTTTA
1 TTTTAAATTATTTTAACTTTTTA
7606959 TTT
1 TTT
7606962 AATTAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTAAATTATTTTAACTTTTTA
Found at i:7612882 original size:5 final size:5
Alignment explanation
Indices: 7612872--7612896 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7612862 ACTAGACTGT
7612872 ACCGA ACCGA ACCGA ACCGA ACCGA
1 ACCGA ACCGA ACCGA ACCGA ACCGA
7612897 CCCCTACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00
Consensus pattern (5 bp):
ACCGA
Found at i:7613189 original size:2 final size:2
Alignment explanation
Indices: 7613182--7613211 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7613172 AGCTAAGGTA
*
7613182 CT CT CT CT CT CG CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7613212 ATTGCTGCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
CT
Found at i:7622717 original size:49 final size:48
Alignment explanation
Indices: 7622664--7622869 Score: 159
Period size: 49 Copynumber: 4.2 Consensus size: 48
7622654 GGCCTTCCGG
** *
7622664 GATGGTAAATTATTGAAATAATGAAAACCATCATTGTTAGGTCATTCGA
1 GATGGTAAATTATTG-AATAATGAAAACCATCATTGTCGGGTCACTCGA
* * * *
7622713 GATGGTAGAATATATAGAA-AGTGAAAGCCATCATTGTCGGGTCA-TCTA
1 GATGGTA-AAT-TATTGAATAATGAAAACCATCATTGTCGGGTCACTCGA
* * ** * *
7622761 GGATGGTAGAA-TATCGAAATAGTGTGAACCATCATTGTCGGG-CAACCCAA
1 -GATGGTA-AATTATTG-AATAATGAAAACCATCATTGTCGGGTC-ACTCGA
* * * *
7622811 GATGGTAAAGTGTGTGTATAATGAAAACCATCATTGTCGGGCCACTCGA
1 GATGGTAAATTAT-TGAATAATGAAAACCATCATTGTCGGGTCACTCGA
7622860 GATGGTAAAT
1 GATGGTAAAT
7622870 CATTCGAACT
Statistics
Matches: 126, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
47 4 0.03
48 8 0.06
49 101 0.80
50 9 0.07
51 4 0.03
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (48 bp):
GATGGTAAATTATTGAATAATGAAAACCATCATTGTCGGGTCACTCGA
Found at i:7624007 original size:28 final size:28
Alignment explanation
Indices: 7623976--7624057 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
7623966 ATGCTATTAT
*
7623976 AGAATAGAGAGCACACAAATTGCTAATC
1 AGAATAGAGAGCACACAAAATGCTAATC
* *
7624004 AGAATAGAGAGAACACAAAGTGCTAATC
1 AGAATAGAGAGCACACAAAATGCTAATC
* *
7624032 AGAACAGAGATCACACAAAATGCTAA
1 AGAATAGAGAGCACACAAAATGCTAA
7624058 ATACACGTAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.50, C:0.17, G:0.18, T:0.15
Consensus pattern (28 bp):
AGAATAGAGAGCACACAAAATGCTAATC
Found at i:7627076 original size:16 final size:17
Alignment explanation
Indices: 7627057--7627089 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7627047 ATTATATAAA
7627057 AATAT-TTTTAAAATAT
1 AATATGTTTTAAAATAT
*
7627073 AATATGTTTTAATATAT
1 AATATGTTTTAAAATAT
7627090 TTCATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
AATATGTTTTAAAATAT
Found at i:7635735 original size:11 final size:11
Alignment explanation
Indices: 7635719--7635744 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7635709 TCGACAAAGG
7635719 AATGGAAGGGA
1 AATGGAAGGGA
7635730 AATGGAAGGGA
1 AATGGAAGGGA
7635741 AATG
1 AATG
7635745 CTAGAGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (11 bp):
AATGGAAGGGA
Found at i:7636802 original size:79 final size:78
Alignment explanation
Indices: 7636690--7636874 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 78
7636680 ATAGTTTTAG
* * * *
7636690 GGGTAAAATATTAGATTGTTTCAATTTGTCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGTTTCAATCTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
*
7636755 CTGCCCTC-TGGTTA
66 CTACCC-CATGG-TA
* * * * *
7636769 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTTAAT
1 GGGTAAAAGATTGGATTGTTTCAATCTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
*
7636834 CTACCCCATGGTC
66 CTACCCCATGGTA
* *
7636847 GTGGTAAGAGATTGGATGGTTTCAATCT
1 G-GGTAAAAGATTGGATTGTTTCAATCT
7636875 ATCCTCTAGT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 3 0.03
79 87 0.97
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (78 bp):
GGGTAAAAGATTGGATTGTTTCAATCTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
CTACCCCATGGTA
Found at i:7636887 original size:118 final size:118
Alignment explanation
Indices: 7636718--7637061 Score: 379
Period size: 118 Copynumber: 2.9 Consensus size: 118
7636708 TTTCAATTTG
* * * * * *
7636718 TCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAATCTGCCCTCTGGTTAGGGTAAAAGATTGG
1 TCCCATGGTCGG-GTAAGAGATTGGATGGT-TTCAATCTACCCTCTAGTTAGGGTAAAAGATTAG
*
7636783 ATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTTAATCTAC
64 ATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTAC
*
7636838 -CCCATGGTCGTGGTAAGAGATTGGATGGTTTCAATCTATCCTCTAGTTAGGGTAAAAGATTAGA
1 TCCCATGGTCG-GGTAAGAGATTGGATGGTTTCAATCTACCCTCTAGTTAGGGTAAAAGATTAGA
* * * *
7636902 TTGTTTCAATTTGCCCCATGGTCGGAGTAAGAGATCGGATGGTCTTCAATCTGC
65 TTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTAC
* * * * * ** * ** * *
7636956 TCTC-TGGTTAGGGTAAAAGATTGGATTGCTTCAATCCGCCC-CATAATCGGGGTAAAAAATCAG
1 TCCCATGG-TCGGGTAAGAGATTGGATGGTTTCAATCTACCCTC-TAGTTAGGGTAAAAGATTAG
*
7637019 ATGGTCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCTGGAT
64 ATTG-CTTCAATCTGCCCCATGGTCGGGGTAAGAGATC-GGAT
7637062 TACTTCAATC
Statistics
Matches: 189, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
117 1 0.01
118 125 0.66
119 58 0.31
120 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (118 bp):
TCCCATGGTCGGGTAAGAGATTGGATGGTTTCAATCTACCCTCTAGTTAGGGTAAAAGATTAGAT
TGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTAC
Found at i:7637025 original size:197 final size:198
Alignment explanation
Indices: 7636690--7637120 Score: 641
Period size: 197 Copynumber: 2.2 Consensus size: 198
7636680 ATAGTTTTAG
* *
7636690 GGGTAAAATATTAGATTGTTTCAATTTGTCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGTTTCAATTTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
* ** * *
7636755 CTGCCCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATC
66 CTGCCCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATCCGCCCCATAATCGGGGTAAAAAATC
* * * **
7636820 GGATGGTCTTTAATCTACCCCATGGTCGTGGTAAGAGAT-TGGATGGTTTCAATCTATCC-TCTA
131 AGATGGTCTTCAATCTACCCCATGGTCGGGGTAAGAGATCTGGATGACTTCAATCT-TCCTTCTA
7636883 GTTA
195 GTTA
* *
7636887 GGGTAAAAGATTAGATTGTTTCAATTTGCCCCATGGTCGGAGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGTTTCAATTTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
*
7636952 CTGCTCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATCCGCCCCATAATCGGGGTAAAAAATC
66 CTGCCCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATCCGCCCCATAATCGGGGTAAAAAATC
* * *
7637017 AGATGGTCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCTGGATTACTTCAATCTTCCTTCTGG
131 AGATGGTCTTCAATCTACCCCATGGTCGGGGTAAGAGATCTGGATGACTTCAATCTTCCTTCTAG
7637082 TTA
196 TTA
* **
7637085 GGGTAAAAGATTTGAATTACTTCAATTTGCCCCATG
1 GGGTAAAAGATTAG-ATTGTTTCAATTTGCCCCATG
7637121 ATTGGGGTAA
Statistics
Matches: 210, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
197 158 0.75
198 33 0.16
199 19 0.09
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (198 bp):
GGGTAAAAGATTAGATTGTTTCAATTTGCCCCATGGTCGGAGAAAGAGATCGAATGGTCTTCAAT
CTGCCCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATCCGCCCCATAATCGGGGTAAAAAATC
AGATGGTCTTCAATCTACCCCATGGTCGGGGTAAGAGATCTGGATGACTTCAATCTTCCTTCTAG
TTA
Found at i:7637049 original size:79 final size:78
Alignment explanation
Indices: 7636748--7637072 Score: 278
Period size: 79 Copynumber: 4.1 Consensus size: 78
7636738 ATCGAATGGT
** * * * *
7636748 CTTCAATCTGCCCTC-TGGTTAGGGTAAAAGATTGGATTG-CTTCAATCTGCCCCATGGTCGGGG
1 CTTCAATCTGCCC-CATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTGCCCC-TGGTCAGGG
* * *
7636811 TAAGAGATCGGATGG
64 TAAAAGATTGGATTG
* * * * * * * *
7636826 TCTTTAATCTACCCCATGGTCGTGGTAAGAGATTGGATGGT-TTCAATCTATCCTCTAGTTAGGG
1 -CTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCT-GCCCCTGGTCAGGG
*
7636890 TAAAAGATTAGATTG
64 TAAAAGATTGGATTG
* * * * *
7636905 TTTCAATTTGCCCCATGGTCGGAGTAAGAGATCGGATGGTCTTCAATCTGCTCTCTGGTTAGGGT
1 CTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTGC-CCCTGGTCAGGGT
7636970 AAAAGATTGGATTG
65 AAAAGATTGGATTG
* ** * * * *
7636984 CTTCAATCCGCCCCATAATCGGGGTAAAAAATCAGATGGTCTTCAATCTGCCCCATGGTCGGGGT
1 CTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTGCCCC-TGGTCAGGGT
* *
7637049 AAGAGATCTGGATTA
65 AAAAGAT-TGGATTG
7637064 CTTCAATCT
1 CTTCAATCT
7637073 TCCTTCTGGT
Statistics
Matches: 198, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
78 37 0.19
79 144 0.73
80 17 0.09
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (78 bp):
CTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAATCTGCCCCTGGTCAGGGTA
AAAGATTGGATTG
Done.