Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 26 of 125
Found at i:7637068 original size:40 final size:39
Alignment explanation
Indices: 7636747--7637135 Score: 226
Period size: 40 Copynumber: 9.8 Consensus size: 39
7636737 GATCGAATGG
**
7636747 TCTTCAATCTGCCCTC-TGGTTAGGGTAAAAGAT-TGGAT
1 TCTTCAATCTGCCC-CATGGTCGGGGTAAAAGATCTGGAT
*
7636785 TGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATC-GGAT
1 T-CTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
* * * *
7636824 GGTCTTTAATCTACCCCATGGTCGTGGTAAGAGAT-TGGAT
1 --TCTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
* * * ** *
7636864 GGT-TTCAATCTATCCTC-TAGTTAGGGTAAAAGAT-TAGAT
1 --TCTTCAATCT-GCCCCATGGTCGGGGTAAAAGATCTGGAT
* * * *
7636903 TGTTTCAATTTGCCCCATGGTCGGAGTAAGAGATC-GGAT
1 T-CTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
* **
7636942 GGTCTTCAATCTGCTCTC-TGGTTAGGGTAAAAGAT-TGGAT
1 --TCTTCAATCTGC-CCCATGGTCGGGGTAAAAGATCTGGAT
* ** * *
7636982 TGCTTCAATCCGCCCCATAATCGGGGTAAAAAATC-AGAT
1 T-CTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
*
7637021 GGTCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCTGGAT
1 --TCTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
* * ** * *
7637062 TACTTCAATCTTCCTTC-TGGTTAGGGTAAAAGATTTGAAT
1 T-CTTCAATCTGCC-CCATGGTCGGGGTAAAAGATCTGGAT
* * *
7637102 TACTTCAATTTGCCCCATGATTGGGGTAAAAGAT
1 T-CTTCAATCTGCCCCATGGTCGGGGTAAAAGAT
7637136 TCGAGGTTGT
Statistics
Matches: 270, Mismatches: 57, Indels: 46
0.72 0.15 0.12
Matches are distributed among these distances:
37 1 0.00
38 8 0.03
39 103 0.38
40 149 0.55
41 9 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (39 bp):
TCTTCAATCTGCCCCATGGTCGGGGTAAAAGATCTGGAT
Found at i:7637887 original size:19 final size:19
Alignment explanation
Indices: 7637863--7637909 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
7637853 GATAAATGAG
7637863 AAAACATCAAACATTAATC
1 AAAACATCAAACATTAATC
*
7637882 AAAACATCAAACATTAATT
1 AAAACATCAAACATTAATC
7637901 AAAACATCA
1 AAAACATCA
7637910 GCCAAGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAACATCAAACATTAATC
Found at i:7642076 original size:31 final size:31
Alignment explanation
Indices: 7642026--7642105 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
7642016 CGTCTTTCTC
7642026 AAACTTT-T-AATGCATGAAAATGCGATGCA
1 AAACTTTATGAATGCATGAAAATGCGATGCA
* *
7642055 AAACTTTATGAATACATGAAAATGCGATGCG
1 AAACTTTATGAATGCATGAAAATGCGATGCA
*
7642086 AAATTTTATGAATGCATGAA
1 AAACTTTATGAATGCATGAA
7642106 TGCATATGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 7 0.16
30 1 0.02
31 37 0.82
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.29
Consensus pattern (31 bp):
AAACTTTATGAATGCATGAAAATGCGATGCA
Found at i:7644666 original size:63 final size:65
Alignment explanation
Indices: 7644570--7644737 Score: 240
Period size: 63 Copynumber: 2.6 Consensus size: 65
7644560 TTATTTTTTT
7644570 ATTTATTTATATTCAT-AA-AAT-AATAAATAAATAATAAAACAAAATTAATATTA-TTT-TA-C
1 ATTTATTTATATTCATAAATAATAAATAAATAAATAATAAAACAAAATTAATATTATTTTATATC
*
7644629 ATTTATTTATATTCATACAATAATAAATAAATAAATAATAAAATAAAATTAATATTATTTTATAT
1 ATTTATTTATATTCATA-AATAATAAATAAATAAATAATAAAACAAAATTAATATTATTTTATA-
*
7644694 TT
64 TC
7644696 ATTTATTTATATTCATAAAAATAATAAATAAATAAATAATAA
1 ATTTATTTATATTCAT--AAATAATAAATAAATAAATAATAA
7644738 TAATAATAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
59 16 0.16
61 2 0.02
62 3 0.03
63 31 0.32
64 3 0.03
65 2 0.02
67 16 0.16
68 23 0.24
69 1 0.01
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (65 bp):
ATTTATTTATATTCATAAATAATAAATAAATAAATAATAAAACAAAATTAATATTATTTTATATC
Found at i:7644734 original size:15 final size:14
Alignment explanation
Indices: 7644710--7644750 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
7644700 ATTTATATTC
7644710 ATAA-AAATAATAA
1 ATAATAAATAATAA
7644723 ATAAATAAATAAT-A
1 AT-AATAAATAATAA
7644737 ATAAT-AATAATAA
1 ATAATAAATAATAA
7644750 A
1 A
7644751 ATTGGGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.24
13 7 0.28
14 5 0.20
15 7 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAATAAATAATAA
Found at i:7644745 original size:63 final size:61
Alignment explanation
Indices: 7644560--7644745 Score: 229
Period size: 59 Copynumber: 3.0 Consensus size: 61
7644550 GGTTTGTTAT
* *
7644560 TTATTTT-TTTATTTATTTATATTCATAAAATAATAAATAAAT-AATAAAACAAAATTAATA
1 TTATTTTATTTATTTATTTATATTCATAAAATAATAAATAAATAAATAATA-ATAATTAATA
* *
7644620 TTATTTTA--CATTTATTTATATTCATACAATAATAAATAAATAAATAATAAAATAAAATTAATA
1 TTATTTTATTTATTTATTTATATTCATAAAATAATAAATAAATAAATAAT--AAT--AATTAATA
7644683 TTATTTTATATTTATTTATTTATATTCATAAAAATAATAAATAAATAAATAATAATAA-TAATA
1 TTA-TTT-TATTTATTTATTTATATTCAT-AAAATAATAAATAAATAAATAATAATAATTAATA
7644746 ATAAAATTGG
Statistics
Matches: 109, Mismatches: 6, Indels: 19
0.81 0.04 0.14
Matches are distributed among these distances:
59 31 0.28
60 12 0.11
61 1 0.01
62 1 0.01
63 16 0.15
64 5 0.05
65 2 0.02
66 3 0.03
67 16 0.15
68 22 0.20
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (61 bp):
TTATTTTATTTATTTATTTATATTCATAAAATAATAAATAAATAAATAATAATAATTAATA
Found at i:7645669 original size:22 final size:22
Alignment explanation
Indices: 7645637--7645681 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7645627 TAAGCTTCAA
7645637 AATTTTCAAAATCAAGATATTT
1 AATTTTCAAAATCAAGATATTT
*
7645659 AATTTTGAAAATCAAGATATTT
1 AATTTTCAAAATCAAGATATTT
7645681 A
1 A
7645682 CAACATCCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AATTTTCAAAATCAAGATATTT
Found at i:7650584 original size:22 final size:22
Alignment explanation
Indices: 7650559--7650601 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7650549 TTTTTGAAAT
7650559 CAATGCCTTGATTTTTCTTCTA
1 CAATGCCTTGATTTTTCTTCTA
*
7650581 CAATGCTTTGATTTTTCTTCT
1 CAATGCCTTGATTTTTCTTCT
7650602 GACATTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.21, G:0.09, T:0.53
Consensus pattern (22 bp):
CAATGCCTTGATTTTTCTTCTA
Found at i:7655446 original size:23 final size:25
Alignment explanation
Indices: 7655420--7655465 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7655410 CCAATTAGGG
7655420 AATTA-TTGTTTAG-ATTTAATTCT
1 AATTATTTGTTTAGAATTTAATTCT
*
7655443 AATTATTTTTTTAGAATTTAATT
1 AATTATTTGTTTAGAATTTAATT
7655466 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (25 bp):
AATTATTTGTTTAGAATTTAATTCT
Found at i:7657357 original size:43 final size:43
Alignment explanation
Indices: 7657262--7657400 Score: 179
Period size: 43 Copynumber: 3.2 Consensus size: 43
7657252 GCTTATGGGT
* *** **
7657262 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCACAGGATTAAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* *
7657305 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAG
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* * *
7657348 AAGCTCCGCTGAAGGCCATATTCTTTAGCGGCGCTTTTTCCAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
7657391 AAGCGCCGCT
1 AAGCGCCGCT
7657401 AATATAACAG
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.24
Consensus pattern (43 bp):
AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
Found at i:7657731 original size:11 final size:11
Alignment explanation
Indices: 7657715--7657752 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
7657705 TTCCTTCGCT
7657715 TGCCTCGCTGC
1 TGCCTCGCTGC
7657726 TGCCTC-C-GC
1 TGCCTCGCTGC
7657735 TTGCCTCGCTGC
1 -TGCCTCGCTGC
7657747 TGCCTC
1 TGCCTC
7657753 CACTTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
9 2 0.08
10 7 0.29
11 13 0.54
12 2 0.08
ACGTcount: A:0.00, C:0.47, G:0.24, T:0.29
Consensus pattern (11 bp):
TGCCTCGCTGC
Found at i:7657748 original size:24 final size:21
Alignment explanation
Indices: 7657701--7657753 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7657691 CTTGTAGCCT
* *
7657701 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
7657722 CTGCTGCCTCCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
7657743 CTGCTGCCTCC
1 CTGCTGCCTCC
7657754 ACTTTAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.21, T:0.32
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCG
Found at i:7657855 original size:66 final size:66
Alignment explanation
Indices: 7657749--7657896 Score: 217
Period size: 66 Copynumber: 2.2 Consensus size: 66
7657739 CTCGCTGCTG
* *
7657749 CCTCCACTTTAAGTTGTATGTGGAGTTCTTCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
1 CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
7657814 A
66 A
* * **
7657815 CCTCCTCTTTAAGTTTTA-GATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTCTCTCGTTGC
1 CCTCCTCTTTAAGTTGTATG-TGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGC
*
7657879 AG
65 AA
7657881 CCTCCTCTTTAAGTTG
1 CCTCCTCTTTAAGTTG
7657897 AGCAATTTGC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
65 1 0.01
66 72 0.99
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.45
Consensus pattern (66 bp):
CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
A
Found at i:7663374 original size:49 final size:49
Alignment explanation
Indices: 7663317--7663669 Score: 415
Period size: 49 Copynumber: 7.0 Consensus size: 49
7663307 TTTAATATAA
* *
7663317 TTAA-ATAATTAGTTACTTTAATATCATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* *
7663365 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* *
7663413 TTAATATAATTATTTACTTTAGTATAATTAAATGATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
*
7663462 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
* * * * * *
7663511 TTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATTAAA-CATGATTAAATAAT
1 TT-AATA--TAATT-AT--TTACT-TTAAT-A-TAATTAAATAATTAAATC-T--TT---TAAC
*
7663574 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
*
7663623 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTA
7663670 CATTAAATAT
Statistics
Matches: 262, Mismatches: 25, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
48 48 0.18
49 137 0.52
50 4 0.02
52 6 0.02
53 2 0.01
54 15 0.06
55 5 0.02
56 8 0.03
57 5 0.02
58 15 0.06
59 2 0.01
60 6 0.02
62 4 0.02
63 5 0.02
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (49 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC
Found at i:7663380 original size:18 final size:18
Alignment explanation
Indices: 7663359--7663491 Score: 71
Period size: 18 Copynumber: 8.0 Consensus size: 18
7663349 AATTAAATCT
7663359 TTTAACTTAATATAATTA
1 TTTAACTTAATATAATTA
7663377 TTT-ACTTTAATATAATTA
1 TTTAAC-TTAATATAATTA
*
7663395 ---AA--TAAT-TAAATA
1 TTTAACTTAATATAATTA
*
7663407 TTTAATTTAATATAATTA
1 TTTAACTTAATATAATTA
*
7663425 TTT-ACTTTAGTATAATTA
1 TTTAAC-TTAATATAATTA
* *
7663443 ---AA-TGATTA-AATCT-
1 TTTAACTTAATATAAT-TA
*
7663456 TTTAACTTAATATAATCA
1 TTTAACTTAATATAATTA
7663474 TTT-ACTTTAATATAATTA
1 TTTAAC-TTAATATAATTA
7663492 AATAATTAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 36
0.65 0.08 0.27
Matches are distributed among these distances:
12 5 0.06
13 7 0.08
14 5 0.06
15 2 0.02
16 4 0.05
17 13 0.15
18 51 0.59
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (18 bp):
TTTAACTTAATATAATTA
Found at i:7663409 original size:30 final size:31
Alignment explanation
Indices: 7663366--7663424 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
7663356 TCTTTTAACT
* *
7663366 TAATATAATTATTTACTTTAATATAATTAAA
1 TAATATAAATATTTAATTTAATATAATTAAA
7663397 TAAT-TAAATATTTAATTTAATATAATTA
1 TAATATAAATATTTAATTTAATATAATTA
7663425 TTTACTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (31 bp):
TAATATAAATATTTAATTTAATATAATTAAA
Found at i:7663592 original size:161 final size:161
Alignment explanation
Indices: 7663409--7663781 Score: 685
Period size: 161 Copynumber: 2.3 Consensus size: 161
7663399 ATTAAATATT
* *
7663409 TAATTTAATATAATTATTTACTTTAGTATAATTAAATGATTAAATCTTTTAACTTAATATAATCA
1 TAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCA
7663474 TTTACTTTAATATAATTAAATAATTAAATCTTTTA-ACTTAAATATTTAATTAATCGATAGTGTT
66 TTTACTTTAATATAATTAAATAATTAAATCTTTTACA-TTAAATATTTAATTAATCGATAGTGTT
7663538 TATAATTAAATACATAATTAAACATGATTAAA
130 TATAATTAAATACATAATTAAACATGATTAAA
*
7663570 TAATTTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCA
1 TAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCA
7663635 TTTACTTTAATATAATTAAATAATTAAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTT
66 TTTACTTTAATATAATTAAATAATTAAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTT
*
7663700 ATAATTAAATATATAATTAAACATGATTAAA
131 ATAATTAAATACATAATTAAACATGATTAAA
*
7663731 TAATTTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTTTTA
1 TAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTA
7663782 CATTAAATAT
Statistics
Matches: 205, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
161 204 1.00
162 1 0.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (161 bp):
TAATTTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAATATAATCA
TTTACTTTAATATAATTAAATAATTAAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTT
ATAATTAAATACATAATTAAACATGATTAAA
Found at i:7663596 original size:18 final size:18
Alignment explanation
Indices: 7663573--7663650 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 18
7663563 GATTAAATAA
7663573 TTTAATATAATCATTTAC
1 TTTAATATAATCATTTAC
7663591 TTTAATAT-A--A-TTA-
1 TTTAATATAATCATTTAC
** *
7663604 AATAAT-TAAATCTTTTAAC
1 TTTAATAT-AATCATTT-AC
7663623 -TTAATATAATCATTTAC
1 TTTAATATAATCATTTAC
7663640 TTTAATATAAT
1 TTTAATATAAT
7663651 TAAATAATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
12 1 0.02
13 4 0.09
14 4 0.09
15 1 0.02
17 5 0.11
18 30 0.65
19 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTAATATAATCATTTAC
Found at i:7663599 original size:112 final size:111
Alignment explanation
Indices: 7663462--7664049 Score: 380
Period size: 112 Copynumber: 5.4 Consensus size: 111
7663452 ATCTTTTAAC
7663462 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
1 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
* *
7663527 TCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAAT
66 T-GATAGTGTTTATAATTAAATAAATAATTAAACATCATTAAATAAT
*
7663574 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTT-AATA--TAA-TCA
1 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
* * * * *
7663635 T-TTACT-TTAAT-A-TAATTAAATAATTAAATCTTTTACATTAAAT-AT
66 TGATAGTGTTTATAATTAAATAAATAATTAAA-C--AT-CATTAAATAAT
* ** * * * *
7663680 TTAAT-TAATCGATAGTGTTTATAAT-TAAATATATAATTAAA-C--ATGA-TTAAATAATTTAA
1 TTAATATAATC-AT-TTACTT-TAATATAATTAAATAATTAAATCTTTTAACTTAAAT-ATTTAA
* * * *
7663739 TATAATTAT-TTAG-TT-TAATATAATTAAATAATTAAATCTTTTACATTAAAT-AT
62 T-TAATGATAGT-GTTTATAAT-TAAATAAATAATTAAA-C--AT-CATTAAATAAT
* ** * * * *
7663792 TTAAT-TAATCGATAGTGTTTATAAT-TAAATATATAATTAAA-C--ATGA-TTAAATAATTTAA
1 TTAATATAATC-AT-TTACTT-TAATATAATTAAATAATTAAATCTTTTAACTTAAAT-ATTTAA
* * *
7663851 TATAATTAT-TTAG-TT-TAATATAATTAAATAATT-AA-AT-ATT---TAAT
62 T-TAATGATAGT-GTTTATAAT-TAAATAAATAATTAAACATCATTAAATAAT
** * *
7663895 TTAATATAATCATAAAATTTAATATCATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
1 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
* *
7663960 TCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAAT
66 T-GATAGTGTTTATAATTAAATAAATAATTAAACATCATTAAATAAT
* *
7664007 TTAATATAATTATTTAGTTTAATATAATTAAATAATTATAATC
1 TTAATATAATCATTTACTTTAATATAATTAAATAATTA-AATC
7664050 AAGCTGATAT
Statistics
Matches: 401, Mismatches: 38, Indels: 73
0.78 0.07 0.14
Matches are distributed among these distances:
101 4 0.01
102 16 0.04
103 26 0.06
104 16 0.04
105 25 0.06
106 34 0.08
107 34 0.08
108 9 0.02
109 11 0.03
110 3 0.01
111 6 0.01
112 213 0.53
113 4 0.01
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (111 bp):
TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAATTAA
TGATAGTGTTTATAATTAAATAAATAATTAAACATCATTAAATAAT
Found at i:7663746 original size:18 final size:18
Alignment explanation
Indices: 7663725--7664048 Score: 124
Period size: 18 Copynumber: 17.8 Consensus size: 18
7663715 ATTAAACATG
7663725 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
7663743 ATTATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
* *
7663761 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
7663782 CATTAAAT-ATTTAAT-TA
1 -ATTAAATAATTTAATATA
** *
7663799 A-TCGATAGTGTT--TATA
1 ATTAAATAAT-TTAATATA
* *
7663815 ATTAAATATATAATTAAACATG
1 ATTAAATA-AT--TT-AATATA
7663837 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
7663855 ATTATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
7663873 ATTAAATAA-TTAA-AT-
1 ATTAAATAATTTAATATA
7663888 ATT---TAATTTAATATA
1 ATTAAATAATTTAATATA
* *
7663903 ATCATAA-AATTTAATATC
1 ATTA-AATAATTTAATATA
* *
7663921 ATTAAATAATTAAATCTTTTA
1 ATTAAATAATTTAA---TATA
7663942 ACTTAAAT-ATTTAAT-TA
1 A-TTAAATAATTTAATATA
** *
7663959 A-TCGATAGTGTT--TATA
1 ATTAAATAAT-TTAATATA
* *
7663975 ATTAAATACATAATTAAACATG
1 ATTAAATA-AT--TT-AATATA
7663997 ATTAAATAATTTAATATA
1 ATTAAATAATTTAATATA
** *
7664015 ATTATTTAGTTTAATATA
1 ATTAAATAATTTAATATA
7664033 ATTAAATAATTATAAT
1 ATTAAATAATT-TAAT
7664049 CAAGCTGATA
Statistics
Matches: 221, Mismatches: 50, Indels: 69
0.65 0.15 0.20
Matches are distributed among these distances:
12 3 0.01
13 4 0.02
14 2 0.01
15 13 0.06
16 11 0.05
17 23 0.10
18 100 0.45
19 12 0.05
21 20 0.09
22 33 0.15
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
ATTAAATAATTTAATATA
Found at i:7663919 original size:30 final size:30
Alignment explanation
Indices: 7663848--7663919 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
7663838 TTAAATAATT
* * *
7663848 TAATATAATTATTTAGTTTAATATAATTAAA
1 TAAT-TAAATATTTAATTTAATATAATCAAA
7663879 TAATTAAATATTTAATTTAATATAATCATAA
1 TAATTAAATATTTAATTTAATATAATCA-AA
*
7663910 -AATTTAATAT
1 TAATTAAATAT
7663920 CATTAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 30 0.83
31 6 0.17
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
TAATTAAATATTTAATTTAATATAATCAAA
Found at i:7663928 original size:160 final size:160
Alignment explanation
Indices: 7663731--7664044 Score: 558
Period size: 160 Copynumber: 2.0 Consensus size: 160
7663721 CATGATTAAA
* ** *
7663731 TAATTTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTTTT-ACATTAAATATTTA
1 TAATTTAATATAATCATAAAATTTAATATAATTAAATAATTAAATCTTTTAAC-TTAAATATTTA
*
7663795 ATTAATCGATAGTGTTTATAATTAAATATATAATTAAACATGATTAAATAATTTAATATAATTAT
65 ATTAATCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATATAATTAT
7663860 TTAGTTTAATATAATTAAATAATTAAATATT
130 TTAGTTTAATATAATTAAATAATTAAATATT
*
7663891 TAATTTAATATAATCATAAAATTTAATATCATTAAATAATTAAATCTTTTAACTTAAATATTTAA
1 TAATTTAATATAATCATAAAATTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAA
7663956 TTAATCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATT
66 TTAATCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATT
7664021 TAGTTTAATATAATTAAATAATTA
131 TAGTTTAATATAATTAAATAATTA
7664045 TAATCAAGCT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
160 145 0.99
161 2 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (160 bp):
TAATTTAATATAATCATAAAATTTAATATAATTAAATAATTAAATCTTTTAACTTAAATATTTAA
TTAATCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATATAATTATT
TAGTTTAATATAATTAAATAATTAAATATT
Found at i:7664183 original size:272 final size:270
Alignment explanation
Indices: 7663462--7664049 Score: 714
Period size: 272 Copynumber: 2.2 Consensus size: 270
7663452 ATCTTTTAAC
* * * ** *
7663462 TTAATATAATCATTTACTTTAATATAATTAAATAATTAAATCTTTTAAC-TTAAATATTTAATTA
1 TTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATC---TAACATGAAATATCAAATCA
* * * * * * *
7663526 ATCGATAGTGTTTATAATTAAATACATAATTAAACATGATTAAATAATTTAATATAATCATTTAC
63 ACCAATAGTGTTTATAATTAAATAAATAATTAAACATGATGAAATAATTTAACACAATCATTTAG
* * * * * ** *
7663591 TTTAATATAATTAAATAATTAAATCTTTTAACT-TAATATAATCATTTACTTTAATATAATTAAA
128 TTTAACATAACTAAATAATTAAAT-ATTTAA-TGAAAAATAATCATAAAATTTAATATAATTAAA
*
7663655 TAATTAAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTTATAATTAAATATATAATTAA
191 TAATTAAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATTAA
7663720 ACATGATTAAATAAT
256 ACATGATTAAATAAT
* * ** *
7663735 TTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTTTTACATTAAATATTTAATTAA
1 TTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATC--TAACATGAAATATCAAATCAA
* * * * * * *
7663800 TCGATAGTGTTTATAATTAAATATATAATTAAACATGATTAAATAATTTAATATAATTATTTAGT
64 CCAATAGTGTTTATAATTAAATAAATAATTAAACATGATGAAATAATTTAACACAATCATTTAGT
* * ** * *
7663865 TTAATATAATTAAATAATTAAATATTTAATTTAATATAATCATAAAATTTAATATCATTAAATAA
129 TTAACATAACTAAATAATTAAATATTTAATGAAAAATAATCATAAAATTTAATATAATTAAATAA
7663930 TTAAATCTTTTA-ACTTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATTAAAC
194 TTAAATCTTTTACA-TTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATTAAAC
7663994 ATGATTAAATAAT
258 ATGATTAAATAAT
7664007 TTAATATAATTATTTAGTTTAATATAATTAAATAATTATAATC
1 TTAATATAATTATTTAGTTTAATATAATTAAATAATTA-AATC
7664050 AAGCTGATAT
Statistics
Matches: 299, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
271 2 0.01
272 152 0.51
273 145 0.48
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (270 bp):
TTAATATAATTATTTAGTTTAATATAATTAAATAATTAAATCTAACATGAAATATCAAATCAACC
AATAGTGTTTATAATTAAATAAATAATTAAACATGATGAAATAATTTAACACAATCATTTAGTTT
AACATAACTAAATAATTAAATATTTAATGAAAAATAATCATAAAATTTAATATAATTAAATAATT
AAATCTTTTACATTAAATATTTAATTAATCGATAGTGTTTATAATTAAATACATAATTAAACATG
ATTAAATAAT
Found at i:7666945 original size:6 final size:6
Alignment explanation
Indices: 7666912--7666944 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7666902 TGAATGAGTC
*
7666912 GCCGGT GCCGGT GCCGGT GCCGGT GCCAGT GCC
1 GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCC
7666945 ACCGCTTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.03, C:0.36, G:0.45, T:0.15
Consensus pattern (6 bp):
GCCGGT
Found at i:7668736 original size:41 final size:41
Alignment explanation
Indices: 7668509--7668869 Score: 279
Period size: 41 Copynumber: 8.8 Consensus size: 41
7668499 TTTAAATAAA
* *
7668509 TTAGCGGCGCTT-ATGGGAAAGCGCCGCTAAT-TCAC-ACCT
1 TTAGCGGCGCTTGA-GGGAAAGCGCCGCTAATGACCCTACCT
* * * *
7668548 TTAGCGACGCTT-ATTAGAAAAGCGCCGCTAAT-AACCTGACCT
1 TTAGCGGCGCTTGA--GGGAAAGCGCCGCTAATGACCCT-ACCT
****** * *
7668590 TTAGCGGCGCTTTTCCTCAAGCGCCGCTAATGACCCGACTTT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTAC-CT
* * *
7668632 TTAGCGGCGCTTGATGGAAAGCGCCGCTAAAGACCCGACCTT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACC-T
* * * * *
7668674 TTCGTGGCGCTTCAGGGAAAGCGCCGCTAATGATCATACCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCT
** * *
7668715 TTAGCGGCGCTTGAGTTAAAGCGCCGCTAATTA-CCTGGCCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCT-ACCT
*
7668756 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCTACCT
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCT
* * * *
7668797 TTAGCGGCG-TATTAGAGAAAGCGCCGCTAATGA-CTTGAACT
1 TTAGCGGCGCT-TGAGGGAAAGCGCCGCTAATGACCCT-ACCT
* **
7668838 TTAGCGGCGCTTGTGATAAAGCGCCGCTAATG
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATG
7668870 TTTTACCTTT
Statistics
Matches: 260, Mismatches: 50, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
39 12 0.05
40 22 0.08
41 138 0.53
42 88 0.34
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (41 bp):
TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCT
Found at i:7668799 original size:82 final size:81
Alignment explanation
Indices: 7668509--7668869 Score: 327
Period size: 82 Copynumber: 4.4 Consensus size: 81
7668499 TTTAAATAAA
* * *
7668509 TTAGCGGCGCTT-ATGGGAAAGCGCCGCTAAT-TCAC-ACCTTTAGCGACGCTT-ATTAGAAAAG
1 TTAGCGGCGCTTGA-GGGAAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTGATT---AAAG
*
7668570 CGCCGCTAATAACCTGACCT
62 CGCCGCTAATGACCTGACCT
****** * * *
7668590 TTAGCGGCGCTTTTCCTCAAGCGCCGCTAATGACCCGACTTTTTAGCGGCGCTTGATGGAAAGCG
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTAC-CTTTAGCGGCGCTTGAT-TAAAGCG
* *
7668655 CCGCTAAAGACCCGACCTT
64 CCGCTAATGACCTGACC-T
* * * * *
7668674 TTCGTGGCGCTTCAGGGAAAGCGCCGCTAATGATCATACCTTTAGCGGCGCTTGAGTTAAAGCGC
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTGA-TTAAAGCGC
* *
7668739 CGCTAATTACCTGGCCT
65 CGCTAATGACCTGACCT
* * *
7668756 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCTACCTTTAGCGGCGTATTAGA-GAAAGCG
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCTTTAGCGGCG-CTT-GATTAAAGCG
* *
7668820 CCGCTAATGACTTGAACT
64 CCGCTAATGACCTGACCT
* **
7668838 TTAGCGGCGCTTGTGATAAAGCGCCGCTAATG
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATG
7668870 TTTTACCTTT
Statistics
Matches: 224, Mismatches: 46, Indels: 19
0.78 0.16 0.07
Matches are distributed among these distances:
81 25 0.11
82 95 0.42
83 58 0.26
84 44 0.20
85 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (81 bp):
TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTGATTAAAGCGCC
GCTAATGACCTGACCT
Found at i:7668858 original size:123 final size:123
Alignment explanation
Indices: 7668509--7668869 Score: 401
Period size: 123 Copynumber: 2.9 Consensus size: 123
7668499 TTTAAATAAA
* *
7668509 TTAGCGGCGCTT-ATGGGAAAGCGCCGCTAATT-CACACCTTTAGCGACGCTTATTAGA-AAAGC
1 TTAGCGGCGCTTGA-GGGAAAGCGCCGCTAATTACCCACCTTTAGCG--GCGTATTAGAGAAAGC
* * * ** * *
7668571 GCCGCTAATAACCTGACCTTTAGCGGCGCTTTTCCTCAAGCGCCGCTAATGACCCGACTTT
63 GCCGCTAATGACATGACCTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATGACCCGACTCT
* ** * * * *
7668632 TTAGCGGCGCTTGATGGAAAGCGCCGCTAAAGACCCGACCTTTTCGTGGCGCT-TCAGGGAAAGC
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCC-ACC-TTTAGCGGCG-TATTAGAGAAAGC
* * * * *
7668696 GCCGCTAATGATCAT-ACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTAATTACCTGGC-CT
63 GCCGCTAATGA-CATGACCTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATGACCCGACTCT
7668756 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCTACCTTTAGCGGCGTATTAGAGAAAGCGC
1 TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCC-ACCTTTAGCGGCGTATTAGAGAAAGCGC
* *
7668821 CGCTAATGACTTGAACTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATG
65 CGCTAATGACATGACCTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATG
7668870 TTTTACCTTT
Statistics
Matches: 196, Mismatches: 33, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
122 3 0.02
123 87 0.44
124 45 0.23
125 54 0.28
126 7 0.04
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (123 bp):
TTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCACCTTTAGCGGCGTATTAGAGAAAGCGCC
GCTAATGACATGACCTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATGACCCGACTCT
Found at i:7678667 original size:15 final size:16
Alignment explanation
Indices: 7678647--7678683 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
7678637 ATCCACCAAC
7678647 TAAAATCTGG-ATTTT
1 TAAAATCTGGAATTTT
7678662 TAAAATCTGGAAATTTT
1 TAAAATCTGG-AATTTT
7678679 TAAAA
1 TAAAA
7678684 ATCAAACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 10 0.50
17 10 0.50
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (16 bp):
TAAAATCTGGAATTTT
Found at i:7678922 original size:29 final size:29
Alignment explanation
Indices: 7678881--7678955 Score: 109
Period size: 29 Copynumber: 2.6 Consensus size: 29
7678871 AAATAATATC
7678881 ATAA-TTTAATAATTATTAT-TTCAAAAAA
1 ATAATTTTAATAATT-TTATATTCAAAAAA
**
7678909 ATAATTTTAATAATTTTATATTTTAAAAA
1 ATAATTTTAATAATTTTATATTCAAAAAA
7678938 ATAATTTTAATAATTTTA
1 ATAATTTTAATAATTTTA
7678956 AACTCATTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
28 8 0.19
29 35 0.81
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
ATAATTTTAATAATTTTATATTCAAAAAA
Found at i:7678942 original size:20 final size:22
Alignment explanation
Indices: 7678917--7678957 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
7678907 AAATAATTTT
7678917 AATAATTTT-AT-ATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
7678937 AATAATTTTAATAATTTTAAA
1 AATAATTTTAATAATTTTAAA
7678958 CTCATTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATAATTTTAATAATTTTAAAA
Found at i:7679306 original size:36 final size:35
Alignment explanation
Indices: 7679266--7679430 Score: 134
Period size: 30 Copynumber: 4.9 Consensus size: 35
7679256 TAACGAATCT
*
7679266 TCCCAAGCTCTTGAGCGAGATATCAAGTCTTCTTAA
1 TCCCAAGCTCTTGAACGAGATATCAAGTCTTCTT-A
* * **
7679302 TCCCAGGCTCTTCAACGAGATATTGAG---TCTTA
1 TCCCAAGCTCTTGAACGAGATATCAAGTCTTCTTA
* * *
7679334 --CCAAGCTCCTGAACAAGATATCAAGTCTTCTCAA
1 TCCCAAGCTCTTGAACGAGATATCAAGTCTTCT-TA
* * *
7679368 TCCCAAGATCTTGAACGAGATATTAAG---AC-T-
1 TCCCAAGCTCTTGAACGAGATATCAAGTCTTCTTA
*
7679398 TCCCAAGCTCTTGAACGAGATATCGAGTCTTCT
1 TCCCAAGCTCTTGAACGAGATATCAAGTCTTCT
7679431 CACGTTCTTG
Statistics
Matches: 97, Mismatches: 22, Indels: 22
0.69 0.16 0.16
Matches are distributed among these distances:
30 43 0.44
32 1 0.01
33 9 0.09
34 1 0.01
36 43 0.44
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (35 bp):
TCCCAAGCTCTTGAACGAGATATCAAGTCTTCTTA
Found at i:7679353 original size:66 final size:66
Alignment explanation
Indices: 7679263--7679432 Score: 241
Period size: 66 Copynumber: 2.6 Consensus size: 66
7679253 AAATAACGAA
* * * * *
7679263 TCTTCCCAAGCTCTTGAGCGAGATATCAAGTCTTCTTAATCCCAGGCTCTTCAACGAGATATTGA
1 TCTTCCCAAGCTCTTGAACGAGATATCAAGTCTTCTCAATCCCAAGATCTTCAACGAGATATTAA
7679328 G
66 G
* * * *
7679329 TCTTACCAAGCTCCTGAACAAGATATCAAGTCTTCTCAATCCCAAGATCTTGAACGAGATATTAA
1 TCTTCCCAAGCTCTTGAACGAGATATCAAGTCTTCTCAATCCCAAGATCTTCAACGAGATATTAA
7679394 G
66 G
* *
7679395 ACTTCCCAAGCTCTTGAACGAGATATCGAGTCTTCTCA
1 TCTTCCCAAGCTCTTGAACGAGATATCAAGTCTTCTCA
7679433 CGTTCTTGAA
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 90 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (66 bp):
TCTTCCCAAGCTCTTGAACGAGATATCAAGTCTTCTCAATCCCAAGATCTTCAACGAGATATTAA
G
Found at i:7684437 original size:20 final size:18
Alignment explanation
Indices: 7684409--7684456 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 18
7684399 CCACGTCAGC
*
7684409 AAATGATTTTAAAATTATTA
1 AAATTATTTTAAAA-TA-TA
7684429 AAATTATTTTTTAAAATATA
1 AAATTA--TTTTAAAATATA
7684449 AAATTATT
1 AAATTATT
7684457 AAAATTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 2 0.08
20 13 0.52
21 2 0.08
22 8 0.32
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATTATTTTAAAATATA
Found at i:7684460 original size:29 final size:31
Alignment explanation
Indices: 7684418--7684490 Score: 123
Period size: 29 Copynumber: 2.4 Consensus size: 31
7684408 CAAATGATTT
7684418 TAAAATTATTAAAATTA-TTTTTTAAAAT-A
1 TAAAATTATTAAAATTAGTTTTTTAAAATAA
*
7684447 TAAAATTATTAAAATTAGTTTTTTGAAATAA
1 TAAAATTATTAAAATTAGTTTTTTAAAATAA
7684478 TAAAATTATTAAA
1 TAAAATTATTAAA
7684491 TAATTTTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 17 0.41
30 10 0.24
31 14 0.34
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (31 bp):
TAAAATTATTAAAATTAGTTTTTTAAAATAA
Found at i:7684685 original size:21 final size:22
Alignment explanation
Indices: 7684664--7684710 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
7684654 TTTGTATAAT
*
7684664 ATTTAATAATTTTAAAAAAATA
1 ATTTAATAATTTCAAAAAAATA
* *
7684686 ATTTTATTATTTC-AAAAAATA
1 ATTTAATAATTTCAAAAAAATA
7684707 ATTT
1 ATTT
7684711 TATTTTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTTAATAATTTCAAAAAAATA
Found at i:7684711 original size:21 final size:21
Alignment explanation
Indices: 7684678--7684737 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
7684668 AATAATTTTA
7684678 AAAAAATAATTTTATTATTTC
1 AAAAAATAATTTTATTATTTC
* *
7684699 AAAAAATAATTTTATTTTTTG
1 AAAAAATAATTTTATTATTTC
* *
7684720 AAATAA-AATTATATTATT
1 AAAAAATAATTTTATTATT
7684738 ATTTTGCCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 10 0.29
21 24 0.71
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
AAAAAATAATTTTATTATTTC
Found at i:7684862 original size:20 final size:22
Alignment explanation
Indices: 7684837--7684876 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
7684827 AAATAATTTT
7684837 AATAATTTT-AT-ATTTTAACA
1 AATAATTTTAATAATTTTAACA
7684857 AATAATTTTAATAATTTTAA
1 AATAATTTTAATAATTTTAA
7684877 AATCATTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 2 0.11
22 7 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (22 bp):
AATAATTTTAATAATTTTAACA
Found at i:7684866 original size:29 final size:31
Alignment explanation
Indices: 7684806--7684875 Score: 108
Period size: 29 Copynumber: 2.3 Consensus size: 31
7684796 TTTTTTTTGA
7684806 AATAATTTTATTATTTCAAAAAAATAATTTT
1 AATAATTTTATTATTTCAAAAAAATAATTTT
* *
7684837 AATAATTTTA-TATTT-TAACAAATAATTTT
1 AATAATTTTATTATTTCAAAAAAATAATTTT
7684866 AATAATTTTA
1 AATAATTTTA
7684876 AAATCATTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 22 0.59
30 5 0.14
31 10 0.27
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (31 bp):
AATAATTTTATTATTTCAAAAAAATAATTTT
Found at i:7684879 original size:20 final size:20
Alignment explanation
Indices: 7684828--7684884 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
7684818 ATTTCAAAAA
7684828 AATAATTTT--AATAATTTT
1 AATAATTTTAAAATAATTTT
7684846 -AT-ATTTTAACAAATAATTTT
1 AATAATTTT-A-AAATAATTTT
*
7684866 AATAATTTTAAAATCATTT
1 AATAATTTTAAAATAATTT
7684885 GCTGATGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
20 17 0.53
21 3 0.09
22 5 0.16
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
AATAATTTTAAAATAATTTT
Found at i:7689831 original size:3 final size:3
Alignment explanation
Indices: 7689825--7689865 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7689815 TCCTCCTCCG
7689825 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
7689866 ATTGAATACG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:7699056 original size:15 final size:14
Alignment explanation
Indices: 7699038--7699084 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
7699028 TTCAAAAAAC
7699038 AATAAATGATATTTA
1 AATAAAT-ATATTTA
7699053 AATAAATATATTT-
1 AATAAATATATTTA
*
7699066 -ATACATCATATTTA
1 AATAAAT-ATATTTA
7699080 AATAA
1 AATAA
7699085 TTAATACACT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 5 0.19
13 6 0.22
14 6 0.22
15 10 0.37
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (14 bp):
AATAAATATATTTA
Found at i:7702919 original size:29 final size:29
Alignment explanation
Indices: 7702887--7702979 Score: 79
Period size: 29 Copynumber: 3.2 Consensus size: 29
7702877 CCAGCCATGG
7702887 GTTCAATCCTTAGACAACCCCGAAATTGT
1 GTTCAATCCTTAGACAACCCCGAAATTGT
* *
7702916 GTTCAAGTCTCGGTT-GACAACGGCC---A-TGG
1 GTTCAA-TC-C--TTAGACAAC-CCCGAAATTGT
*
7702945 GTTCAATCCTTAGACAACCCCGAAATTAT
1 GTTCAATCCTTAGACAACCCCGAAATTGT
7702974 GTTCAA
1 GTTCAA
7702980 GTCTCGGTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
25 4 0.08
26 6 0.12
27 1 0.02
28 3 0.06
29 21 0.43
30 3 0.06
31 1 0.02
32 6 0.12
33 4 0.08
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (29 bp):
GTTCAATCCTTAGACAACCCCGAAATTGT
Found at i:7702936 original size:32 final size:32
Alignment explanation
Indices: 7702899--7702992 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 32
7702889 TCAATCCTTA
7702899 GACAACCCCGAAATTGTGTTCAAGTCTCGGTT
1 GACAACCCCGAAATTGTGTTCAAGTCTCGGTT
* *
7702931 GACAACGGCC---A-TGGGTTCAA-TC-C--TT
1 GACAAC-CCCGAAATTGTGTTCAAGTCTCGGTT
*
7702956 AGACAACCCCGAAATTATGTTCAAGTCTCGGTT
1 -GACAACCCCGAAATTGTGTTCAAGTCTCGGTT
7702989 GACA
1 GACA
7702993 CCAGTCATGG
Statistics
Matches: 47, Mismatches: 5, Indels: 20
0.65 0.07 0.28
Matches are distributed among these distances:
25 4 0.09
26 6 0.13
27 1 0.02
28 3 0.06
29 15 0.32
30 3 0.06
31 1 0.02
32 10 0.21
33 4 0.09
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (32 bp):
GACAACCCCGAAATTGTGTTCAAGTCTCGGTT
Found at i:7702945 original size:58 final size:58
Alignment explanation
Indices: 7702855--7703021 Score: 289
Period size: 58 Copynumber: 2.9 Consensus size: 58
7702845 ACAAAGAATC
*
7702855 TGTGTTCAAGTATCGGTTGACACCAGCCATGGGTTCAATCCTTAGACAACCCCGAAAT
1 TGTGTTCAAGTCTCGGTTGACACCAGCCATGGGTTCAATCCTTAGACAACCCCGAAAT
* *
7702913 TGTGTTCAAGTCTCGGTTGACAACGGCCATGGGTTCAATCCTTAGACAACCCCGAAAT
1 TGTGTTCAAGTCTCGGTTGACACCAGCCATGGGTTCAATCCTTAGACAACCCCGAAAT
* *
7702971 TATGTTCAAGTCTCGGTTGACACCAGTCATGGGTTCAATCCTTAGACAACC
1 TGTGTTCAAGTCTCGGTTGACACCAGCCATGGGTTCAATCCTTAGACAACC
7703022 TCTATGTCTA
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 102 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (58 bp):
TGTGTTCAAGTCTCGGTTGACACCAGCCATGGGTTCAATCCTTAGACAACCCCGAAAT
Found at i:7711848 original size:6 final size:6
Alignment explanation
Indices: 7711839--7711886 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
7711829 TTTAAATTTT
* * *
7711839 ATATTA ATATTA ATATTA ACATTA ACATTA ACATTA ATATT- ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
7711886 A
1 A
7711887 ATAAACATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (6 bp):
ATATTA
Found at i:7712520 original size:17 final size:17
Alignment explanation
Indices: 7712500--7712541 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7712490 CAACTATAGC
*
7712500 GAGCTCGCATATTCAGT
1 GAGCTCGCATATTCAAT
*
7712517 GAGCTCGTATATTCAAT
1 GAGCTCGCATATTCAAT
*
7712534 GAACTCGC
1 GAGCTCGC
7712542 TGTCATGGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (17 bp):
GAGCTCGCATATTCAAT
Found at i:7712882 original size:19 final size:19
Alignment explanation
Indices: 7712870--7712907 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7712860 TAAATTTATC
*
7712870 ATTATTTTTTAAAATATTT
1 ATTATTTTTTTAAATATTT
7712889 ATTATTTTTTTAAATATTT
1 ATTATTTTTTTAAATATTT
7712908 CTTTGAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTATTTTTTTAAATATTT
Found at i:7717598 original size:35 final size:34
Alignment explanation
Indices: 7717559--7717627 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 34
7717549 GTTTAGTAAC
*
7717559 ATAATAAATTATT-AATATAATTTTATTAATAATAA
1 ATAATAAATT-TTAAAAATAATTTTATTAA-AATAA
*
7717594 ATAATAAATTTTAAAAATAATTTTTTTAAAATAA
1 ATAATAAATTTTAAAAATAATTTTATTAAAATAA
7717628 TATTCTTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 7 0.23
35 24 0.77
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (34 bp):
ATAATAAATTTTAAAAATAATTTTATTAAAATAA
Found at i:7717680 original size:15 final size:15
Alignment explanation
Indices: 7717662--7717718 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
7717652 ATCCAATATT
7717662 AATATTTTAATAATA
1 AATATTTTAATAATA
*
7717677 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
7717696 AATATATTAATAATA
1 AATATTTTAATAATA
*
7717711 AATGTTTT
1 AATATTTT
7717719 GTTGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:7717999 original size:26 final size:27
Alignment explanation
Indices: 7717961--7718012 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
7717951 AAAATATTTT
*
7717961 TTTAATATGTATAAAAACAATATAAAA
1 TTTAATATGTATAAAAACAAAATAAAA
* *
7717988 TTTAA-ATTTATAAATACAAAATAAA
1 TTTAATATGTATAAAAACAAAATAAA
7718013 TTCAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (27 bp):
TTTAATATGTATAAAAACAAAATAAAA
Found at i:7724339 original size:2 final size:2
Alignment explanation
Indices: 7724291--7724321 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7724281 CAATACGTTA
7724291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7724322 CACTTTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7729155 original size:43 final size:43
Alignment explanation
Indices: 7729108--7729205 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
7729098 GCTAGTCCAA
* * *
7729108 ATGATGCACTAAATGTGTCAGTACATTTGCTTTAG-TTCGTCCG
1 ATGATGCACTAAATGTGCCAGTACATTTACTTTAGTTTAG-CCG
* * * *
7729151 ATGATGCACTATATTTGCCAGTATATTTACTTTAGTTTAGCTG
1 ATGATGCACTAAATGTGCCAGTACATTTACTTTAGTTTAGCCG
7729194 ATGATGCACTAA
1 ATGATGCACTAA
7729206 GGTGCTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 43 0.93
44 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (43 bp):
ATGATGCACTAAATGTGCCAGTACATTTACTTTAGTTTAGCCG
Found at i:7731541 original size:24 final size:22
Alignment explanation
Indices: 7731514--7731559 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
7731504 ATAAATAAAA
*
7731514 AAAATTATAAAATTATAAAATATT
1 AAAATAATAAAA-TAT-AAATATT
*
7731538 AAAATAATATAATATAAATATT
1 AAAATAATAAAATATAAATATT
7731560 TGTTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAATAATAAAATATAAATATT
Found at i:7735458 original size:13 final size:14
Alignment explanation
Indices: 7735431--7735462 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7735421 TGAAATCTAA
7735431 AAATTAAAAAGATT
1 AAATTAAAAAGATT
7735445 AAATTAAAAA-ATT
1 AAATTAAAAAGATT
7735458 AAATT
1 AAATT
7735463 TTAAAAGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
AAATTAAAAAGATT
Found at i:7735531 original size:10 final size:10
Alignment explanation
Indices: 7735516--7735549 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
7735506 ATGAAAGATG
7735516 TTTTAATTTT
1 TTTTAATTTT
7735526 TTTTAATTTT
1 TTTTAATTTT
7735536 TTTTAAATTTT
1 TTTT-AATTTT
7735547 TTT
1 TTT
7735550 GTTTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTAATTTT
Found at i:7735538 original size:11 final size:11
Alignment explanation
Indices: 7735516--7735549 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7735506 ATGAAAGATG
7735516 TTTTAA-TTTT
1 TTTTAATTTTT
7735526 TTTTAATTTTT
1 TTTTAATTTTT
*
7735537 TTTAAATTTTT
1 TTTTAATTTTT
7735548 TT
1 TT
7735550 GTTTATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTAATTTTT
Found at i:7736943 original size:12 final size:12
Alignment explanation
Indices: 7736926--7736950 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7736916 AATACAATTT
7736926 ATTTTAATTACG
1 ATTTTAATTACG
7736938 ATTTTAATTACG
1 ATTTTAATTACG
7736950 A
1 A
7736951 AAAGACATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTTAATTACG
Found at i:7738379 original size:34 final size:29
Alignment explanation
Indices: 7738324--7738398 Score: 73
Period size: 34 Copynumber: 2.4 Consensus size: 29
7738314 AGAATATTTT
*
7738324 TTAA-AATTTATTATTAAAATAAAATTGGAATA
1 TTAATAATTTATTATAAAAAT-AAATT---ATA
7738356 TTAAATAATTTATTA-AAATAATAAATTATA
1 TT-AATAATTTATTATAAA-AATAAATTATA
7738386 TTAATAATTTATT
1 TTAATAATTTATT
7738399 TTATGATTAG
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
29 11 0.28
30 5 0.13
32 2 0.05
33 9 0.23
34 12 0.31
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (29 bp):
TTAATAATTTATTATAAAAATAAATTATA
Found at i:7739505 original size:23 final size:22
Alignment explanation
Indices: 7739461--7739509 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
7739451 TAATTCTTAT
7739461 AATTTTTAATTTTTTGAAAATTA
1 AATTTTTAATTTTTTG-AAATTA
*
7739484 AATTTTATATATTTTTTGAATTTA
1 AATTTT-TA-ATTTTTTGAAATTA
7739508 AA
1 AA
7739510 AATTAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 9 0.39
25 8 0.35
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
AATTTTTAATTTTTTGAAATTA
Found at i:7740548 original size:2 final size:2
Alignment explanation
Indices: 7740541--7740574 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7740531 CCTACATTCA
7740541 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7740575 GTTCTTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7744918 original size:12 final size:12
Alignment explanation
Indices: 7744901--7744925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7744891 GCAAAAGTCA
7744901 CATGGAGGGAGT
1 CATGGAGGGAGT
7744913 CATGGAGGGAGT
1 CATGGAGGGAGT
7744925 C
1 C
7744926 GGGTTAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.12, G:0.48, T:0.16
Consensus pattern (12 bp):
CATGGAGGGAGT
Found at i:7751039 original size:24 final size:24
Alignment explanation
Indices: 7750982--7751040 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
7750972 CTAATAAGAG
* *
7750982 TTTAACTCAAACAAATAAACAGAG
1 TTTAACTGAAACAAATAAACAGAA
*
7751006 TTTAATTGAAACAAATAAACAGAA
1 TTTAACTGAAACAAATAAACAGAA
7751030 TTTAACTGAAA
1 TTTAACTGAAA
7751041 GATTATTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.54, C:0.12, G:0.08, T:0.25
Consensus pattern (24 bp):
TTTAACTGAAACAAATAAACAGAA
Found at i:7755204 original size:11 final size:11
Alignment explanation
Indices: 7755184--7755244 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
7755174 TCGCTATTAT
*
7755184 TTTTGTTGTTG
1 TTTTGATGTTG
*
7755195 TTTTGATGTTAT
1 TTTTGATGTT-G
*
7755207 TTTTGCTGTTG
1 TTTTGATGTTG
*
7755218 TTTTGGTTGTTG
1 TTTT-GATGTTG
* *
7755230 TTTGGATGTTA
1 TTTTGATGTTG
7755241 TTTT
1 TTTT
7755245 CTATGTGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
11 21 0.54
12 18 0.46
ACGTcount: A:0.07, C:0.02, G:0.25, T:0.67
Consensus pattern (11 bp):
TTTTGATGTTG
Found at i:7757176 original size:41 final size:41
Alignment explanation
Indices: 7757073--7757176 Score: 172
Period size: 41 Copynumber: 2.5 Consensus size: 41
7757063 AACTCAATAT
*
7757073 TTAAATGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
1 TTAAA-GGAAGACTCATGTCTTGGGATGAGAATGAGATCATA
*
7757115 TTAAAGGAAGACTCATGTCTTGGGATGAGAATGAGATTATA
1 TTAAAGGAAGACTCATGTCTTGGGATGAGAATGAGATCATA
*
7757156 TTAAAGGAAAACTCATGTCTT
1 TTAAAGGAAGACTCATGTCTT
7757177 AAAATGAGCG
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
41 54 0.92
42 5 0.08
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (41 bp):
TTAAAGGAAGACTCATGTCTTGGGATGAGAATGAGATCATA
Found at i:7757256 original size:40 final size:40
Alignment explanation
Indices: 7757203--7757299 Score: 160
Period size: 40 Copynumber: 2.4 Consensus size: 40
7757193 TTGTTTTTAA
7757203 AAAAGGAAGACTTATGACTC-GATAAAGCATAAGAGTGATT
1 AAAAGGAAGACTTATGACTCAG-TAAAGCATAAGAGTGATT
* *
7757243 TAAAGGAAGACTTATGACTCAGTAGAGCATAAGAGTGATT
1 AAAAGGAAGACTTATGACTCAGTAAAGCATAAGAGTGATT
7757283 AAAAGGAAGACTTATGA
1 AAAAGGAAGACTTATGA
7757300 ACCTATGAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
40 52 0.98
41 1 0.02
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (40 bp):
AAAAGGAAGACTTATGACTCAGTAAAGCATAAGAGTGATT
Found at i:7767799 original size:41 final size:41
Alignment explanation
Indices: 7767741--7767885 Score: 245
Period size: 41 Copynumber: 3.5 Consensus size: 41
7767731 AACTCGATAT
*
7767741 TTAAATGGAAGACTCATGTCTCGAGATGAGAATGAGATCATA
1 TTAAA-GGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
* *
7767783 TTAAAGGAAGATTCATGTCTCGGGATGAGAATGAGATCTTA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
*
7767824 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
7767865 TTAAAGGAAGACTCATGTCTC
1 TTAAAGGAAGACTCATGTCTC
7767886 AAAATGAGCG
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 92 0.95
42 5 0.05
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.28
Consensus pattern (41 bp):
TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
Found at i:7767969 original size:40 final size:40
Alignment explanation
Indices: 7767913--7768009 Score: 158
Period size: 40 Copynumber: 2.4 Consensus size: 40
7767903 TTTTTTTTAG
* *
7767913 AAAAGGAGGAGTTATGACTCGGTAGAGCATAAGAGTGATT
1 AAAAGGAAGACTTATGACTCGGTAGAGCATAAGAGTGATT
* *
7767953 TAAAGGAAGACTTATGACTTGGTAGAGCATAAGAGTGATT
1 AAAAGGAAGACTTATGACTCGGTAGAGCATAAGAGTGATT
7767993 AAAAGGAAGACTTATGA
1 AAAAGGAAGACTTATGA
7768010 ACCTATGAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.40, C:0.07, G:0.29, T:0.24
Consensus pattern (40 bp):
AAAAGGAAGACTTATGACTCGGTAGAGCATAAGAGTGATT
Found at i:7771729 original size:20 final size:20
Alignment explanation
Indices: 7771704--7771741 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7771694 GGTTTCCTGA
7771704 AAAAAGTCAACGATCAACCT
1 AAAAAGTCAACGATCAACCT
7771724 AAAAAGTCAACGATCAAC
1 AAAAAGTCAACGATCAAC
7771742 GGTCAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.24, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAAAGTCAACGATCAACCT
Found at i:7771926 original size:22 final size:22
Alignment explanation
Indices: 7771900--7771945 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7771890 TGATTAAAAA
7771900 TTAGGCTTAATTGGCTTGGGGT
1 TTAGGCTTAATTGGCTTGGGGT
* *
7771922 TTAGGCTTGATTGGCTTGTGGT
1 TTAGGCTTAATTGGCTTGGGGT
7771944 TT
1 TT
7771946 GGGTTTAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.35, T:0.46
Consensus pattern (22 bp):
TTAGGCTTAATTGGCTTGGGGT
Found at i:7779238 original size:12 final size:13
Alignment explanation
Indices: 7779216--7779245 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7779206 AAACTAGCAA
7779216 AAAAGAGAAAAAG
1 AAAAGAGAAAAAG
7779229 AAAA-AGAAAAAG
1 AAAAGAGAAAAAG
7779241 AAAAG
1 AAAAG
7779246 GAGGGACCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAGAGAAAAAG
Found at i:7787070 original size:49 final size:49
Alignment explanation
Indices: 7787017--7787490 Score: 142
Period size: 49 Copynumber: 9.7 Consensus size: 49
7787007 AACGGTGGAC
* * * *
7787017 CTAACACCTTAAAATC-AAAGAGAGATATATTAAAGCCATAACGATAGAT
1 CTAACACCTTAAAATCGAAA-AGAGAAAGATTAAAGCAAAAACGATAGAT
* *
7787066 CTAACACCTT-AAATCGAAAAGGGAAAGATTGAAGCAAAAACGATAGAT
1 CTAACACCTTAAAATCGAAAAGAGAAAGATTAAAGCAAAAACGATAGAT
* * * * * * * * * * *
7787114 CTTACACCTTAAAATTGAAGAAG-GATAGGTTGAAGCCATAATGACAAAC
1 CTAACACCTTAAAATCGAA-AAGAGAAAGATTAAAGCAAAAACGATAGAT
* * **** * *
7787163 CTAACACCTTAAAA-CTGAAAAGGGAAAGATTGAAGTTGCAACAATGGAT
1 CTAACACCTTAAAATC-GAAAAGAGAAAGATTAAAGCAAAAACGATAGAT
* * * * * *** * * *
7787212 CTTACACCTTAAAA-CCAAAGAGGGATAGATTGAAGCCGTAATGGTGGAT
1 CTAACACCTTAAAATCGAAA-AGAGAAAGATTAAAGCAAAAACGATAGAT
* * * * ** * *
7787261 TTAACACCCTAAAATCGAAAAGGGAAAGATTGAAGTC-GTAACGGTGGAT
1 CTAACACCTTAAAATCGAAAAGAGAAAGATTAAAG-CAAAAACGATAGAT
* * * * * ** *** *
7787310 CTTACGCCTTAAAATTGAAGAAG-GATAGGTTAAAGTC-GTAACGGCGGAC
1 CTAACACCTTAAAATCGAA-AAGAGAAAGATTAAAG-CAAAAACGATAGAT
* * **
7787359 CTAACACCTTAAAATCGAAAAGGGAAAGATTGAAGTC-GCAACGAT-GAAT
1 CTAACACCTTAAAATCGAAAAGAGAAAGATTAAAG-CAAAAACGATAG-AT
* * * * * * * *
7787408 CTTACACCTTAAAATCGAAGAGGGATAGATTGAAGCCATAACGA-CGAAT
1 CTAACACCTTAAAATCGAAAAGAGAAAGATTAAAGCAAAAACGATAG-AT
* * * *
7787457 TTAACACCCTAAAATCAAAAAAAGAAAGATTAAA
1 CTAACACCTTAAAATCGAAAAGAGAAAGATTAAA
7787491 ACCACAATGA
Statistics
Matches: 333, Mismatches: 79, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
48 48 0.14
49 274 0.82
50 11 0.03
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (49 bp):
CTAACACCTTAAAATCGAAAAGAGAAAGATTAAAGCAAAAACGATAGAT
Found at i:7787223 original size:98 final size:98
Alignment explanation
Indices: 7786988--7787706 Score: 518
Period size: 98 Copynumber: 7.4 Consensus size: 98
7786978 GAGTTTGAAG
* * * * * * * * *
7786988 AGGGATAGGTTGAAGCCGCAACGGTGGACCTAACACCTTAAAATCAAAG-AGAGATATATTAAAG
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAG-GATAGATTGAAG
* *** *
7787052 CCATAACGATAGATCTAACACCTT-AAATCGAAA
65 CCATAATGGCGGACCTAACACCTTAAAATCGAAA
** * * *
7787085 AGGGAAAGATTGAAG-CAAAAACGATAGATCTTACACCTTAAAATTGAAGAAGGATAGGTTGAAG
1 AGGGAAAGATTGAAGTC-GCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAG
* **
7787149 CCATAATGACAAACCTAACACCTTAAAA-CTGAAA
65 CCATAATGGCGGACCTAACACCTTAAAATC-GAAA
* * * * *
7787183 AGGGAAAGATTGAAGTTGCAACAATGGATCTTACACCTTAAAACCAAAGAGGGATAGATTGAAGC
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAGC
* * ** *
7787248 CGTAATGGTGGATTTAACACCCTAAAATCGAAA
66 CATAATGGCGGACCTAACACCTTAAAATCGAAA
* * * * * * *
7787281 AGGGAAAGATTGAAGTCGTAACGGTGGATCTTACGCCTTAAAATTGAAGAAGGATAGGTTAAAGT
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAGC
* *
7787346 CGTAACGGCGGACCTAACACCTTAAAATCGAAA
66 CATAATGGCGGACCTAACACCTTAAAATCGAAA
* *
7787379 AGGGAAAGATTGAAGTCGCAACGATGAATCTTACACCTTAAAATCGAAGAGGGATAGATTGAAGC
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAGC
* * * ** * *
7787444 CATAACGACGAATTTAACACCCTAAAATCAAAA
66 CATAATGGCGGACCTAACACCTTAAAATCGAAA
** * ** * * * *
7787477 AAAGAAAGATTAAAACCACAATGACGGATCTTACACCTTAAAA-CTGAAG-AGAGATAGGTTG-A
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATC-GAAGAAG-GATAGATTGAA
*
7787539 --C-----GGCGGACCTAACA-CTCTAAAA-CTGAAG
64 GCCATAATGGCGGACCTAACACCT-TAAAATC-GAAA
* * ** ** * * *
7787567 AGGGAAAGCTTGAAGCCGCAACGACAGATCTTACACCTTAAAATTAAAGAGGGAAAGATTGAAGT
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAGC
*** * * *
7787632 CGCGACGACGGACCTAACATCC-TAAAATCGAAG
66 CATAATGGCGGACCTAACA-CCTTAAAATCGAAA
* * * * * *
7787665 AGGGATAGATTGAAGCCACGACGACGGATCTAACACCTTAAA
1 AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAA
7787707 GCCAAAAAGG
Statistics
Matches: 493, Mismatches: 106, Indels: 45
0.77 0.16 0.07
Matches are distributed among these distances:
89 2 0.00
90 61 0.12
91 2 0.00
93 1 0.00
95 1 0.00
96 1 0.00
97 70 0.14
98 352 0.71
99 2 0.00
100 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (98 bp):
AGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCGAAGAAGGATAGATTGAAGC
CATAATGGCGGACCTAACACCTTAAAATCGAAA
Found at i:7787363 original size:196 final size:194
Alignment explanation
Indices: 7786983--7787706 Score: 714
Period size: 196 Copynumber: 3.7 Consensus size: 194
7786973 TCATAGAGTT
* * * * * * * * *
7786983 TGAAGAGGGATAGGTTGAAGCCGCAACGGTGGACCTAACACCTTAAAATCAAAGAGAGATATATT
1 TGAAAAGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCAAAGAGGGATAGATT
* * * * *
7787048 AAAGCCATAACGATAGATCTAACA-CCTTAAATCGAAAAGGGAAAGATTGAAGCAAAAACGATAG
66 GAAGCCATAACGATGGATTTAACACCCTAAAATCGAAAAGGGAAAGATTGAAGC-AAAACGATGG
* * * * **
7787112 ATCTTACACCTTAAAATTGAAGAAGGATAGGTTGAAGCCATAATGACAAACCTAACACCTTAAAA
130 ATCTTACACCTTAAAATTGAAGAAGGATAGGTT-AAGTCGTAACGGCGGACCTAACACCTTAAAA
7787177 C
194 C
* * *
7787178 TGAAAAGGGAAAGATTGAAGTTGCAACAATGGATCTTACACCTTAAAACCAAAGAGGGATAGATT
1 TGAAAAGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCAAAGAGGGATAGATT
* * * ** *
7787243 GAAGCCGTAATGGTGGATTTAACACCCTAAAATCGAAAAGGGAAAGATTGAAGTCGTAACGGTGG
66 GAAGCCATAACGATGGATTTAACACCCTAAAATCGAAAAGGGAAAGATTGAAG-CAAAACGATGG
*
7787308 ATCTTACGCCTTAAAATTGAAGAAGGATAGGTTAAAGTCGTAACGGCGGACCTAACACCTTAAAA
130 ATCTTACACCTTAAAATTGAAGAAGGATAGGTT-AAGTCGTAACGGCGGACCTAACACCTTAAAA
7787373 -
194 C
* *
7787373 TCGAAAAGGGAAAGATTGAAGTCGCAACGATGAATCTTACACCTTAAAATCGAAGAGGGATAGAT
1 T-GAAAAGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCAAAGAGGGATAGAT
* * * ** * * * * *
7787438 TGAAGCCATAACGACGAATTTAACACCCTAAAATCAAAAAAAGAAAGATTAAAACCACAATGACG
65 TGAAGCCATAACGATGGATTTAACACCCTAAAATCGAAAAGGGAAAGATT-GAAGCAAAACGATG
*
7787503 GATCTTACACCTTAAAACTGAAG-AGAGATAGG-T---T-G--ACGGCGGACCTAACA-CTCTAA
129 GATCTTACACCTTAAAATTGAAGAAG-GATAGGTTAAGTCGTAACGGCGGACCTAACACCT-TAA
7787559 AAC
192 AAC
* * * ** * *
7787562 TGAAGAGGGAAAGCTTGAAGCCGCAACGACAGATCTTACACCTTAAAATTAAAGAGGGAAAGATT
1 TGAAAAGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCAAAGAGGGATAGATT
* *** * ** * * * ** *
7787627 GAAGTCGCGACGACGGACCTAACATCCTAAAATCGAAGAGGGATAGATTGAAGCCACGACGACGG
66 GAAGCCATAACGATGGATTTAACACCCTAAAATCGAAAAGGGAAAGATTGAAG-CAAAACGATGG
*
7787692 ATCTAACACCTTAAA
130 ATCTTACACCTTAAA
7787707 GCCAAAAAGG
Statistics
Matches: 441, Mismatches: 80, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
187 4 0.01
188 134 0.30
189 1 0.00
190 1 0.00
191 1 0.00
195 75 0.17
196 222 0.50
197 3 0.01
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.19
Consensus pattern (194 bp):
TGAAAAGGGAAAGATTGAAGTCGCAACGATGGATCTTACACCTTAAAATCAAAGAGGGATAGATT
GAAGCCATAACGATGGATTTAACACCCTAAAATCGAAAAGGGAAAGATTGAAGCAAAACGATGGA
TCTTACACCTTAAAATTGAAGAAGGATAGGTTAAGTCGTAACGGCGGACCTAACACCTTAAAAC
Found at i:7787629 original size:49 final size:49
Alignment explanation
Indices: 7787564--7787753 Score: 193
Period size: 49 Copynumber: 3.9 Consensus size: 49
7787554 TCTAAAACTG
* * *
7787564 AAGAGGGAAAGCTTGAAGCCGCAACGACAGATCTTACACCTTAAAATTA
1 AAGAGGGAAAGATTGAAGCCGCAACGACGGATCTTACACCTTAAAATCA
* * * * *
7787613 AAGAGGGAAAGATTGAAGTCGCGACGACGGACCTAACATCC-TAAAATCG
1 AAGAGGGAAAGATTGAAGCCGCAACGACGGATCTTACA-CCTTAAAATCA
* * * * **
7787662 AAGAGGGATAGATTGAAGCCACGACGACGGATCTAACACCTTAAAGCCA
1 AAGAGGGAAAGATTGAAGCCGCAACGACGGATCTTACACCTTAAAATCA
* * * *
7787711 AAAAGGGAACATATTGAAGCCGTAACGACGAATCTTACACCTT
1 AAGAGGGAA-AGATTGAAGCCGCAACGACGGATCTTACACCTT
7787754 TTGAAAAAAA
Statistics
Matches: 115, Mismatches: 23, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
48 2 0.02
49 84 0.73
50 29 0.25
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (49 bp):
AAGAGGGAAAGATTGAAGCCGCAACGACGGATCTTACACCTTAAAATCA
Found at i:7787718 original size:98 final size:99
Alignment explanation
Indices: 7787537--7787729 Score: 239
Period size: 98 Copynumber: 2.0 Consensus size: 99
7787527 GAGATAGGTT
* * * *
7787537 GACGGCGGACCTAACACTCTAAAACTGAAGAGGGAAAGCTTGAAGCCGCAACGACAGATCTTACA
1 GACGACGGACCTAACACTCTAAAACTGAAGAGGGAAAGATTGAAGCCACAACGACAGATCTAACA
** *
7787602 CCTTAAAATTAAAGAGGGAA-AGATTGAAGTCGC
66 CCTTAAAACCAAAAAGGGAACAGATTGAAGTCGC
* * *
7787635 GACGACGGACCTAACA-TCCTAAAA-TCGAAGAGGGATAGATTGAAGCCACGACGACGGATCTAA
1 GACGACGGACCTAACACT-CTAAAACT-GAAGAGGGAAAGATTGAAGCCACAACGACAGATCTAA
* *
7787698 CACCTTAAAGCCAAAAAGGGAACATATTGAAG
64 CACCTTAAAACCAAAAAGGGAACAGATTGAAG
7787730 CCGTAACGAC
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
97 2 0.03
98 70 0.88
99 8 0.10
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.16
Consensus pattern (99 bp):
GACGACGGACCTAACACTCTAAAACTGAAGAGGGAAAGATTGAAGCCACAACGACAGATCTAACA
CCTTAAAACCAAAAAGGGAACAGATTGAAGTCGC
Found at i:7795980 original size:30 final size:30
Alignment explanation
Indices: 7795946--7796204 Score: 193
Period size: 30 Copynumber: 8.9 Consensus size: 30
7795936 GTTCGAGGTT
7795946 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
1 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
* * * *
7795976 AAAATATCATTTTAGGAAAG-TTCA-AGGTA
1 AAAATGTAATTTT-GGAAAGTTTTAGGGGTA
* * * *
7796005 AAAAAGTATTTTTGG-AAGTTTGA-GGGCA
1 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
* * *
7796033 AAAATGTAATTTTTGAGAGTTTGA-GGGTA
1 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
* *
7796062 AAAATGTGATTTTTGG-AAG-TTT-GGGG-G
1 AAAATGT-AATTTTGGAAAGTTTTAGGGGTA
* ** *
7796089 AAAATGTAATTTTTGAAAAGTTCGA-GGGAA
1 AAAATGTAA-TTTTGGAAAGTTTTAGGGGTA
*
7796119 AAAATGTAATTTTGGAAAAG-TTTAGGGGTT
1 AAAATGTAATTTTGG-AAAGTTTTAGGGGTA
* *
7796149 AAAATGTAATTTTGGAAAATTTTAGGGTTA
1 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
*
7796179 AAATATG-ATTTTTGGAAAG-TTTAGGG
1 AAA-ATGTAATTTTGGAAAGTTTTAGGG
7796205 ATTCTTTGGG
Statistics
Matches: 179, Mismatches: 36, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
26 1 0.01
27 15 0.08
28 28 0.16
29 54 0.30
30 72 0.40
31 9 0.05
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAGTTTTAGGGGTA
Found at i:7796036 original size:29 final size:28
Alignment explanation
Indices: 7795946--7796205 Score: 158
Period size: 29 Copynumber: 9.0 Consensus size: 28
7795936 GTTCGAGGTT
*
7795946 AAAATGTAA-TTTTGGAAAGTTTTAGGGGTA
1 AAAATGTAATTTTTGG-AAGTTTGA-GGG-A
* * * ** *
7795976 AAAATATCATTTTAGGAAAGTTCAAGGTA
1 AAAATGTAATTTTTGG-AAGTTTGAGGGA
*
7796005 AAAAAGT-ATTTTTGGAAGTTTGAGGGCA
1 AAAATGTAATTTTTGGAAGTTTGAGGG-A
7796033 AAAATGTAATTTTT-GAGAGTTTGAGGGTA
1 AAAATGTAATTTTTGGA-AGTTTGAGGG-A
* *
7796062 AAAATGTGATTTTTGGAAGTTTG-GGGG
1 AAAATGTAATTTTTGGAAGTTTGAGGGA
* *
7796089 AAAATGTAATTTTTGAAAAGTTCGAGGGAA
1 AAAATGTAATTTTTG-GAAGTTTGAGGG-A
*
7796119 AAAATGTAA-TTTTGGAAAAGTTT-AGGGGTT
1 AAAATGTAATTTTTGG--AAGTTTGA-GGG-A
* * *
7796149 AAAATGTAA-TTTTGGAAAATTTTAGGGTT
1 AAAATGTAATTTTTGG-AAGTTTGAGGG-A
* *
7796178 AAAATATGATTTTTGGAAAGTTT-AGGGA
1 AAAATGTAATTTTTGG-AAGTTTGAGGGA
7796206 TTCTTTGGGC
Statistics
Matches: 188, Mismatches: 29, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
27 22 0.12
28 25 0.13
29 73 0.39
30 56 0.30
31 12 0.06
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGTAATTTTTGGAAGTTTGAGGGA
Found at i:7797470 original size:3 final size:3
Alignment explanation
Indices: 7797462--7797504 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
7797452 TCAAATCTCT
7797462 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
7797505 ATTGTTTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7798661 original size:39 final size:39
Alignment explanation
Indices: 7798615--7799224 Score: 370
Period size: 39 Copynumber: 15.7 Consensus size: 39
7798605 GATGGTTGCA
* *
7798615 ATCTGCCCCAGGCTCAGGGTAAGAGATTGACTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * * * ** *
7798654 ATTTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCGGTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * **
7798693 ATCTGCCCCAAACTCGGGGTAAAAG-TT--CAAATGGCTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGG-TG
* * **
7798730 CAATTTGTCCCAAGCTCGGGGTAAGAGATTGGTTGATGGTG
1 --ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * * * *
7798771 ATCTACCCTAAACTCGGGGTAAAAGATCGA---ATGGCTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGG-TG
* * * *
7798808 CAATCTGTCTCAAGTTCGGGGTAAGAGATTGGCTGATGGTG
1 --ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * * * **
7798849 ATCTG-CCCAGGCTCGAGGTAAGAGATCGGA-TGATTGCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT-TGACTGATGGTG
* *
7798887 ATCTGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * * **
7798926 ATTTGCCCCAAGCTCGGGATAAGAGATCGGA-TGACT-GCA
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT-TGACTGA-TGGTG
* *
7798965 ATCTGCCCCAAGCTCGGGATAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * * * * *
7799004 ATTTACCCTAGGCTCAGGGTAAGAGA-T--CGGATGGTTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGG-TG
* * **
7799041 CAATCTACCCCAGGCTC-GGGTAAGAGATTGGTTGATGGTG
1 --ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* ** * *
7799081 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGAAGGCT-GTA
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT-TGACTGATGGTG
* * * **
7799120 ATCTACCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
* * *
7799159 ATCTGGCCCAAGCTTGGGGTAAAAGATTGGA-TGATGGTG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATT-GACTGATGGTG
* * * *
7799198 ATTTGCTCCAGGCTCGAGGTAAGAGAT
1 ATCTGCCCCAAGCTCGGGGTAAGAGAT
7799225 CGAAATCTTC
Statistics
Matches: 429, Mismatches: 113, Indels: 58
0.71 0.19 0.10
Matches are distributed among these distances:
36 12 0.03
37 5 0.01
38 58 0.14
39 327 0.76
40 10 0.02
41 9 0.02
42 8 0.02
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATTGACTGATGGTG
Found at i:7798922 original size:155 final size:155
Alignment explanation
Indices: 7798738--7799193 Score: 603
Period size: 155 Copynumber: 2.9 Consensus size: 155
7798728 TGCAATTTGT
* * * *
7798738 CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTACCCTAAACTCGGGGTAAAAGATCGAAT
1 CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGAAT
* *
7798803 GGCTGCAATCTGTCTCAAGTTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCAGGCTCGAGGT
66 GGCTGCAATCTGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCAGGCTCGAGGT
*
7798868 AAGAGATCGGATGATTGCAATCTGC
131 AAGAGATCGGATGATTGCAATCTAC
* * * * *
7798893 CTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATTTGCCCCAAGCTCGGGATAAGAGATCGGAT
1 CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGAAT
* * * * *
7798958 GACTGCAATCTGCCCCAAGCTCGGGATAAGAGATTGGCTGATGGTGATTTACCCTAGGCTC-AGG
66 GGCTGCAATCTGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCC-AGGCTCGA-G
*
7799022 GTAAGAGATCGGATGGTTGCAATCTAC
129 GTAAGAGATCGGATGATTGCAATCTAC
*
7799049 CCCAGGCTC-GGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGAA
1 CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATC-GAA
* * * * * * *
7799113 -GGCTGTAATCTACCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGGCCCAAGCTTGGG
65 TGGCTGCAATCTGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCT-GCCCAGGCTCGAG
* *
7799177 GTAAAAGATTGGATGAT
129 GTAAGAGATCGGATGAT
7799194 GGTGATTTGC
Statistics
Matches: 257, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
155 213 0.83
156 44 0.17
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.24
Consensus pattern (155 bp):
CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGAAT
GGCTGCAATCTGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCAGGCTCGAGGT
AAGAGATCGGATGATTGCAATCTAC
Found at i:7798992 original size:78 final size:78
Alignment explanation
Indices: 7798657--7799192 Score: 581
Period size: 78 Copynumber: 6.9 Consensus size: 78
7798647 GATGGTGATT
* * ** ** * * * * *
7798657 TGCCCCAGGCTCGGGGTAAGAGATCGAATGGCGGTAATCTGCCCCAAACTCGGGGTAAAAGTTCA
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
* * *
7798722 AATGGCTGCAATT
66 GATGACTGCAATC
* * * * * *
7798735 TGTCCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTACCCTAAACTCGGGGTAAAAGATCG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
* *
7798800 AATGGCTGCAATC
66 GATGACTGCAATC
* * * * *
7798813 TGTCTCAAGTTCGGGGTAAGAGATTGGCTGATGGTGATCTG-CCCAGGCTCGAGGTAAGAGATCG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
*
7798877 GATGATTGCAATC
66 GATGACTGCAATC
* * *
7798890 TGCCTCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATTTGCCCCAAGCTCGGGATAAGAGATCG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
7798955 GATGACTGCAATC
66 GATGACTGCAATC
* * * * * *
7798968 TGCCCCAAGCTCGGGATAAGAGATTGGCTGATGGTGATTTACCCTAGGCTCAGGGTAAGAGATCG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
**
7799033 GATGGTTGCAATC
66 GATGACTGCAATC
* * *
7799046 TACCCCAGGCTC-GGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
* * *
7799110 GAAGGCTGTAATC
66 GATGACTGCAATC
* * * * * * * *
7799123 TACCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGGCCCAAGCTTGGGGTAAAAGATTG
1 TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
7799188 GATGA
66 GATGA
7799193 TGGTGATTTG
Statistics
Matches: 396, Mismatches: 60, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
77 132 0.33
78 264 0.67
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (78 bp):
TGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCG
GATGACTGCAATC
Found at i:7799137 original size:194 final size:195
Alignment explanation
Indices: 7798854--7799226 Score: 441
Period size: 194 Copynumber: 1.9 Consensus size: 195
7798844 TGGTGATCTG
* * * **
7798854 CCCAGGCTCGAGGTAAGAGATCGGATGATTGCAATCTGCCTCAAGCTCGGGGTAAGAGATTGGCT
1 CCCAGGCTCGAGGTAAGAGATCGGATGATGGCAATCTGCCCCAAGCTCGGGGTAAGAGATCGGAG
* * *
7798919 GATGGTGATTTGCCCCAAGCTCGGGATAAGAGATCGGATGACT-GCAATCTGCCCCAAGCTCGGG
66 GATGGTAATCTACCCCAAGCTCGGGATAAGAGATCGGATGA-TGGCAATCTGCCCCAAGCTCGGG
* *
7798983 ATAAGAGATTGGCTGATGGTGATTTAC-CCTAGGCTC-AGGGTAAGAGATCGGATGGTTGCAATC
130 ATAAAAGATTGGATGATGGTGATTTACTCC-AGGCTCGA-GGTAAGAGATCGGATGGTTGCAATC
7799046 TAC
193 TAC
* * **
7799049 CCCAGGCTCG-GGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGAA
1 CCCAGGCTCGAGGTAAGAGATCGGATGATGGCAATCTGCCCCAAGCTCGGGGTAAGAGATCGG-A
* * * * * * ** * *
7799113 GGCT-GTAATCTACCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGGCCCAAGCTTGGG
65 GGATGGTAATCTACCCCAAGCTCGGGATAAGAGATCGGATGATGGCAATCTGCCCCAAGCTCGGG
* *
7799177 GTAAAAGATTGGATGATGGTGATTTGCTCCAGGCTCGAGGTAAGAGATCG
130 ATAAAAGATTGGATGATGGTGATTTACTCCAGGCTCGAGGTAAGAGATCG
7799227 AAATCTTCAA
Statistics
Matches: 148, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
193 1 0.01
194 132 0.89
195 15 0.10
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (195 bp):
CCCAGGCTCGAGGTAAGAGATCGGATGATGGCAATCTGCCCCAAGCTCGGGGTAAGAGATCGGAG
GATGGTAATCTACCCCAAGCTCGGGATAAGAGATCGGATGATGGCAATCTGCCCCAAGCTCGGGA
TAAAAGATTGGATGATGGTGATTTACTCCAGGCTCGAGGTAAGAGATCGGATGGTTGCAATCTAC
Found at i:7799210 original size:78 final size:78
Alignment explanation
Indices: 7798615--7799224 Score: 523
Period size: 78 Copynumber: 7.8 Consensus size: 78
7798605 GATGGTTGCA
* * * * * *
7798615 ATCTGCCCCAGGCTCAGGGTAAGAGAT-TGACTGATGGTGATTTGCCCCAGGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGA-TGATGGTAATCTGCCCCAAGCTCGGGGTAAGAG
* ** ** *
7798679 ATCGAATGGCGGTA
65 ATTGGCTGATGGTG
* * * ** * * * *
7798693 ATCTGCCCCAAACTCGGGGTAAAAGTTCAAATGGCT-GCAATTTGTCCCAAGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGAT-GATGGTAATCTGCCCCAAGCTCGGGGTAAGAG
*
7798757 ATTGGTTGATGGTG
65 ATTGGCTGATGGTG
* * * * * * * * * *
7798771 ATCTACCCTAAACTCGGGGTAAAAGATCGAATGGCT-GCAATCTGTCTCAAGTTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGAT-GATGGTAATCTGCCCCAAGCTCGGGGTAAGAG
7798835 ATTGGCTGATGGTG
65 ATTGGCTGATGGTG
* * * * *
7798849 ATCTG-CCCAGGCTCGAGGTAAGAGATCGGATGATTGCAATCTGCCTCAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGATGGTAATCTGCCCCAAGCTCGGGGTAAGAGA
7798913 TTGGCTGATGGTG
66 TTGGCTGATGGTG
* * * *
7798926 ATTTGCCCCAAGCTCGGGATAAGAGATCGGATGACT-GCAATCTGCCCCAAGCTCGGGATAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGA-TGGTAATCTGCCCCAAGCTCGGGGTAAGAG
7798990 ATTGGCTGATGGTG
65 ATTGGCTGATGGTG
* * * * * * * * * *
7799004 ATTTACCCTAGGCTCAGGGTAAGAGATCGGATGGTTGCAATCTACCCCAGGCTC-GGGTAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGATGGTAATCTGCCCCAAGCTCGGGGTAAGAGA
*
7799068 TTGGTTGATGGTG
66 TTGGCTGATGGTG
* * * * *
7799081 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGAAGGCT-GTAATCTACCTCAGGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGG-ATGATGGTAATCTGCCCCAAGCTCGGGGTAAGAG
*
7799145 ATTGGTTGATGGTG
65 ATTGGCTGATGGTG
* * * * * * * * *
7799159 ATCTGGCCCAAGCTTGGGGTAAAAGATTGGATGATGGTGATTTGCTCCAGGCTCGAGGTAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGATGGTAATCTGCCCCAAGCTCGGGGTAAGAGA
7799224 T
66 T
7799225 CGAAATCTTC
Statistics
Matches: 450, Mismatches: 73, Indels: 18
0.83 0.13 0.03
Matches are distributed among these distances:
76 2 0.00
77 130 0.29
78 314 0.70
79 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (78 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGATGGTAATCTGCCCCAAGCTCGGGGTAAGAGA
TTGGCTGATGGTG
Found at i:7799540 original size:50 final size:50
Alignment explanation
Indices: 7799486--7800064 Score: 387
Period size: 50 Copynumber: 11.7 Consensus size: 50
7799476 TATTATTTTT
* * * *
7799486 TAAGGTATCGGATTCGCCGTTGCGGCTTCAACCTTTCCCTTCATATCTTC
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
** * * **
7799536 TAAGGTA-CCAAGTTCGCCGTTTCAACCTCAACCTTTCCCATCACAT-TTC
1 TAAGGTATCGGA-TTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * *
7799585 -ATGGTATCAGATTCGCTGTTGCGGCCTCAATCTTTCCCATCATATCTTC
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * *
7799634 TGAGGTA-CCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGT-TTC
1 TAAGGTATCGGA-TTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * *
7799683 -ATGGTA-CTGGATTCACCGTTGCGGCCTCAATCTTTCCCATCACATCTTT
1 TAAGGTATC-GGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * *
7799732 TGAGGTACCAGG-TTCACCGTTGCGGCCTCAACCTTTCCCGTCACATCTTT
1 TAAGGTATC-GGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * *
7799782 TAAGGTATCAGG-TTTACCGTTGCGGCCTTAACCTTTCCCTTCAAATCTTC
1 TAAGGTATC-GGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * *** * * *
7799832 -ATGGTATTGGGTTTGTCGTTACGACATCAACCTTTCCCATCACAT-TTC
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * ** *
7799880 -ATGGTACCGGATTCACCATTGCAGCCTCAATCTTTCCCATCATGTCTTT
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * ** * *
7799929 TGAGGTATCGAATTTACCGTCACGGCCTCAATCC-TTCCCTTCAAATCTTC
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAA-CCTTTCCCATCACATCTTC
* * * * ***
7799979 -ATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCTTGTCACATCTTC
1 TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * *
7800028 CAAGGTA-CTGGGTTCACTGTTGCGGCCTCAACCTTTC
1 TAAGGTATC-GGATTCACCGTTGCGGCCTCAACCTTTC
7800065 GCTTCAAATC
Statistics
Matches: 408, Mismatches: 105, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
48 105 0.26
49 88 0.22
50 211 0.52
51 4 0.01
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.34
Consensus pattern (50 bp):
TAAGGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
Found at i:7799662 original size:98 final size:98
Alignment explanation
Indices: 7799489--7800064 Score: 498
Period size: 98 Copynumber: 5.9 Consensus size: 98
7799479 TATTTTTTAA
* * * * * *
7799489 GGTATCGGATTCGCCGTTGCGGCTTCAACCTTTCCCTTCATATCTTCTAAGGTACCAAGTTCGCC
1 GGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
* *
7799554 GTTTCAACCTCAACCTTTCCCATCACATTTCAT
66 GTTACGACCTCAACCTTTCCCATCACATTTCAT
* * * *
7799587 GGTATCAGATTCGCTGTTGCGGCCTCAATCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
1 GGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
* *
7799652 ATTACGACCTCAACCTTTCCCATCACGTTTCAT
66 GTTACGACCTCAACCTTTCCCATCACATTTCAT
* * *
7799685 GGTA-CTGGATTCACCGTTGCGGCCTCAATCTTTCCCATCACATCTTTTGAGGTACC-AGGTTCA
1 GGTATC-GGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGA-GTTCA
* * * * *
7799748 CCGTTGCGGCCTCAACCTTTCCCGTCACATCTTTTAA
64 CCGTTACGACCTCAACCTTTCCCATCACA--TTTCAT
* * * * ** * **
7799785 GGTATCAGG-TTTACCGTTGCGGCCTTAACCTTTCCCTTCAAATCTTC--ATGGTATTGGGTTTG
1 GGTATC-GGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGA-GGTACCGAGTTCA
* *
7799847 TCGTTACGACATCAACCTTTCCCATCACATTTCAT
64 CCGTTACGACCTCAACCTTTCCCATCACATTTCAT
* * * * * * * * *
7799882 GGTACCGGATTCACCATTGCAGCCTCAATCTTTCCCATCATGTCTTTTGAGGTATCGAATTTACC
1 GGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
* * * *
7799947 GTCACGGCCTCAATCC-TTCCCTTCAAATCTTCAT
66 GTTACGACCTCAA-CCTTTCCCATCACAT-TTCAT
* * * *** * ** * * *
7799981 GGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCTTGTCACATCTTCCAAGGTACTGGGTTCACT
1 GGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
* *
7800046 GTTGCGGCCTCAACCTTTC
66 GTTACGACCTCAACCTTTC
7800065 GCTTCAAATC
Statistics
Matches: 381, Mismatches: 84, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
96 2 0.01
97 40 0.10
98 197 0.52
99 99 0.26
100 40 0.10
101 3 0.01
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.34
Consensus pattern (98 bp):
GGTATCGGATTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTGAGGTACCGAGTTCACC
GTTACGACCTCAACCTTTCCCATCACATTTCAT
Found at i:7799894 original size:197 final size:195
Alignment explanation
Indices: 7799489--7800014 Score: 518
Period size: 197 Copynumber: 2.7 Consensus size: 195
7799479 TATTTTTTAA
* * * * * * * *
7799489 GGTATCGGATTCGCCGTTGCGGCTTCAACCTTTCCCTTCATATCTTCTAAGGTACCAAGTTCGCC
1 GGTACCGGATTCACCGTTGCGGCCTCAATCTTTCCCATCATATCTTTTGAGGTACCAAGTTCACC
* * * * *
7799554 GTTTCAACCTCAACCTTTCCCATCACATTTCATGGTATCAGATTCGCTGTTGCGGCCTCAATCTT
66 GTTGCAACCTCAACCTTTCCCATCACATTTCAAGGTATCAGATTCACCGTTGCGGCCTCAACCTT
* * *
7799619 TCCCATCATATCTTCTGAGGTACCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGTTTCA
131 TCCCATCAAATCTTCT-AGGTACCGAGTTCACCATTACGACATCAACCTTTCCCATCACATTTCA
7799684 T
195 T
* * *
7799685 GGTACTGGATTCACCGTTGCGGCCTCAATCTTTCCCATCACATCTTTTGAGGTACCAGGTTCACC
1 GGTACCGGATTCACCGTTGCGGCCTCAATCTTTCCCATCATATCTTTTGAGGTACCAAGTTCACC
** * * * * *
7799750 GTTGCGGCCTCAACCTTTCCCGTCACATCTTTTAAGGTATCAGGTTTACCGTTGCGGCCTTAACC
66 GTTGCAACCTCAACCTTTCCCATCACA--TTTCAAGGTATCAGATTCACCGTTGCGGCCTCAACC
* ** * *** *
7799815 TTTCCCTTCAAATCTTC-ATGGTATTGGGTTTGTCGTTACGACATCAACCTTTCCCATCACATTT
129 TTTCCCATCAAATCTTCTA-GGTACCGAGTTCACCATTACGACATCAACCTTTCCCATCACATTT
7799879 CAT
193 CAT
* * * * *
7799882 GGTACCGGATTCACCATTGCAGCCTCAATCTTTCCCATCATGTCTTTTGAGGTATCGAA-TTTAC
1 GGTACCGGATTCACCGTTGCGGCCTCAATCTTTCCCATCATATCTTTTGAGGTA-CCAAGTTCAC
** ** * * * * * * *
7799946 CGTCACGGCCTCAATCC-TTCCCTTCAAATCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAAC
65 CGTTGCAACCTCAA-CCTTTCCCATCACAT-TTCAAGGTATCAGATTCACCGTTGCGGCCTCAAC
7800010 CTTTC
128 CTTTC
7800015 TTGTCACATC
Statistics
Matches: 271, Mismatches: 53, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
195 1 0.00
196 110 0.41
197 113 0.42
198 47 0.17
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.33
Consensus pattern (195 bp):
GGTACCGGATTCACCGTTGCGGCCTCAATCTTTCCCATCATATCTTTTGAGGTACCAAGTTCACC
GTTGCAACCTCAACCTTTCCCATCACATTTCAAGGTATCAGATTCACCGTTGCGGCCTCAACCTT
TCCCATCAAATCTTCTAGGTACCGAGTTCACCATTACGACATCAACCTTTCCCATCACATTTCAT
Found at i:7800000 original size:246 final size:244
Alignment explanation
Indices: 7799488--7800080 Score: 592
Period size: 246 Copynumber: 2.4 Consensus size: 244
7799478 TTATTTTTTA
* * * * * *
7799488 AGGTATCGGATTCGCCGTTGCGGCTTCAACCTTTCCCTTCATATCTTCTAAGGTACCAAGTTCGC
1 AGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCGTCACATCTTCTAAGGTA-CAGGTTCAC
* ** * * * * * *
7799553 CGTTTCAACCTCAACCTTTCCCATCACAT-TTCATGGTATCAGATTCGCTGTTGCGGCCTCAATC
65 CGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCAGATTCGCTGTTACGACATCAACC
*
7799617 TTTCCCATCATATCTTCTGAGGTACCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGTTT
130 TTTCCCATCACATCTTCT-AGGTACCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGTTT
* ** * * *
7799682 CATGGTACTGGATTCACCGTTGCGGCCTCAATCTTTCCCATCACATCTTTT
194 CATGGTACTGAATTCACCGTCACGGCCTCAATCCTTCCCATCAAATCTTAT
* * * * *
7799733 GAGGTACCAGGTTCACCGTTGCGGCCTCAACCTTTCCCGTCACATCTTTTAAGGTATCAGGTTTA
1 -AGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCGTCACATCTTCTAAGGTA-CAGGTTCA
* ** * *
7799798 CCGTTGCGGCCTTAACCTTTCCCTTCAAATCTTCATGGTATTGGGTTTG-TCGTTACGACATCAA
64 CCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCAGATTCGCT-GTTACGACATCAA
* * *
7799862 CCTTTCCCATCACAT-TTC-ATGGTACCG-GATTCACCATTGC-AGCCTCAATCTTTCCCATCAT
128 CCTTTCCCATCACATCTTCTA-GGTACCGAG-TTCACCATTACGA-CCTCAACCTTTCCCATCAC
* * *
7799923 GTCTT-TTGAGGTA-TCGAATTTACCGTCACGGCCTCAATCCTTCCCTTCAAATCTTCAT
190 GT-TTCAT--GGTACT-GAATTCACCGTCACGGCCTCAATCCTTCCCATCAAATCTT-AT
* ** * *
7799981 -GGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCTTGTCACATCTTCCAAGGTACTGGGTTCAC
1 AGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCGTCACATCTTCTAAGGTAC-AGGTTCAC
* *
7800045 TGTTGCGGCCTCAACCTTTCGCTTCAAATCTTCATG
65 CGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATG
7800081 TTTTTCTCAG
Statistics
Matches: 284, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
244 3 0.01
245 38 0.13
246 168 0.59
247 74 0.26
248 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.34
Consensus pattern (244 bp):
AGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCGTCACATCTTCTAAGGTACAGGTTCACC
GTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCAGATTCGCTGTTACGACATCAACCT
TTCCCATCACATCTTCTAGGTACCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGTTTCA
TGGTACTGAATTCACCGTCACGGCCTCAATCCTTCCCATCAAATCTTAT
Found at i:7800061 original size:197 final size:196
Alignment explanation
Indices: 7799561--7800064 Score: 541
Period size: 197 Copynumber: 2.6 Consensus size: 196
7799551 GCCGTTTCAA
* * * *
7799561 CCTCAACCTTTCCCATCACAT-TTCATGGTATCAGATTCGCTGTTGCGGCCTCAATCTTTCCCAT
1 CCTCAACCTTTCCCATCACATCTTCATGGTATCAGGTTCGCCGTTGCGGCCTCAACCTTT-CCTT
* ** * * ** *
7799625 CATATCTTCTGAGGTACCGAGTTCACCATTACGACCTCAACCTTTCCCATCACGTTTCATGGTAC
65 CAAATCTTCCAAGGTACTGGGTTCACTGTTACGACCTCAACCTTTCCCATCACATTTCATGGTAC
* * * * **
7799690 TGGATTCACCGTTGCGGCCTCAATCTTTCCCATCACATCTTTTGAGGTACCAGGTTCACCGTTGC
130 CGGATTCACCATTGCAGCCTCAATCTTTCCCATCACATCTTTTGAGGTACCAGATTCACCGTCAC
7799755 GG
195 GG
* * * ** *
7799757 CCTCAACCTTTCCCGTCACATCTTTTAAGGTATCAGGTTTACCGTTGCGGCCTTAACCTTTCCCT
1 CCTCAACCTTTCCCATCACATC-TTCATGGTATCAGGTTCGCCGTTGCGGCCTCAACCTTT-CCT
* * ** *
7799822 TCAAATCTT-CATGGTATTGGGTT-TGTCGTTACGACATCAACCTTTCCCATCACATTTCATGGT
64 TCAAATCTTCCAAGGTACTGGGTTCACT-GTTACGACCTCAACCTTTCCCATCACATTTCATGGT
** * *
7799885 ACCGGATTCACCATTGCAGCCTCAATCTTTCCCATCATGTCTTTTGAGGTATC-GAATTTACCGT
128 ACCGGATTCACCATTGCAGCCTCAATCTTTCCCATCACATCTTTTGAGGTACCAG-ATTCACCGT
7799949 CACGG
192 CACGG
* * * * *
7799954 CCTCAATCC-TTCCCTTCAAATCTTCATGGTATCGGGTTCGCCGTTGCAGCCTCAACCTTTCTTG
1 CCTCAA-CCTTTCCCATCACATCTTCATGGTATCAGGTTCGCCGTTGCGGCCTCAACCTTTCCT-
* * *
7800018 TCACATCTTCCAAGGTACTGGGTTCACTGTTGCGGCCTCAACCTTTC
64 TCAAATCTTCCAAGGTACTGGGTTCACTGTTACGACCTCAACCTTTC
7800065 GCTTCAAATC
Statistics
Matches: 249, Mismatches: 51, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
195 2 0.01
196 60 0.24
197 143 0.57
198 44 0.18
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (196 bp):
CCTCAACCTTTCCCATCACATCTTCATGGTATCAGGTTCGCCGTTGCGGCCTCAACCTTTCCTTC
AAATCTTCCAAGGTACTGGGTTCACTGTTACGACCTCAACCTTTCCCATCACATTTCATGGTACC
GGATTCACCATTGCAGCCTCAATCTTTCCCATCACATCTTTTGAGGTACCAGATTCACCGTCACG
G
Found at i:7801041 original size:21 final size:21
Alignment explanation
Indices: 7801016--7801069 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 21
7801006 CGACCTCTCC
*
7801016 TTTTCTTTTCCCGTTTTTCTA
1 TTTTCTTTTCCCATTTTTCTA
7801037 TTTTCTTTTTCCCATTTTTCTA
1 TTTTC-TTTTCCCATTTTTCTA
*
7801059 TTTCCTTTTCC
1 TTTTCTTTTCC
7801070 TTTTTCCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 11 0.37
22 19 0.63
ACGTcount: A:0.06, C:0.26, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTCTTTTCCCATTTTTCTA
Found at i:7801076 original size:7 final size:7
Alignment explanation
Indices: 7801016--7801109 Score: 99
Period size: 7 Copynumber: 13.6 Consensus size: 7
7801006 CGACCTCTCC
7801016 TTTT-CT
1 TTTTCCT
*
7801022 TTTCCCGT
1 TTTTCC-T
7801030 TTTT-CT
1 TTTTCCT
7801036 ATTTT-CT
1 -TTTTCCT
7801043 TTTTCCCAT
1 TTTT-CC-T
7801052 TTTT-CT
1 TTTTCCT
*
7801058 ATTTCC-
1 TTTTCCT
7801064 TTTTCCT
1 TTTTCCT
7801071 TTTTCCT
1 TTTTCCT
7801078 TTTTCCT
1 TTTTCCT
7801085 TTTTCCT
1 TTTTCCT
7801092 TTTTCCT
1 TTTTCCT
7801099 TTTTCCT
1 TTTTCCT
7801106 TTTT
1 TTTT
7801110 TTCTTTTTTC
Statistics
Matches: 76, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
6 17 0.22
7 49 0.64
8 5 0.07
9 5 0.07
ACGTcount: A:0.03, C:0.26, G:0.01, T:0.70
Consensus pattern (7 bp):
TTTTCCT
Found at i:7801116 original size:7 final size:7
Alignment explanation
Indices: 7801029--7801138 Score: 71
Period size: 7 Copynumber: 15.7 Consensus size: 7
7801019 TCTTTTCCCG
7801029 TTTTTCT
1 TTTTTCT
*
7801036 ATTTTCT
1 TTTTTCT
* *
7801043 TTTTCCCA
1 TTTT-TCT
7801051 TTTTTC-
1 TTTTTCT
* *
7801057 TATTTCC
1 TTTTTCT
*
7801064 TTTTCCT
1 TTTTTCT
*
7801071 TTTTCCT
1 TTTTTCT
*
7801078 TTTTCCT
1 TTTTTCT
*
7801085 TTTTCCT
1 TTTTTCT
*
7801092 TTTTCCT
1 TTTTTCT
*
7801099 TTTTCCTT
1 TTTTTC-T
7801107 TTTTTCT
1 TTTTTCT
7801114 TTTTTCT
1 TTTTTCT
*
7801121 TTATT-T
1 TTTTTCT
*
7801127 TCTTTCT
1 TTTTTCT
7801134 TTTTT
1 TTTTT
7801139 ATTTATGTTT
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
6 9 0.11
7 65 0.76
8 11 0.13
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTTCT
Found at i:7801116 original size:14 final size:15
Alignment explanation
Indices: 7801037--7801131 Score: 90
Period size: 14 Copynumber: 6.5 Consensus size: 15
7801027 CGTTTTTCTA
**
7801037 TTTTCTTTTTCCCAT
1 TTTTCTTTTTCCTTT
*
7801052 TTTTCTATTTCC--T
1 TTTTCTTTTTCCTTT
*
7801065 TTTCCTTTTTCC-TT
1 TTTTCTTTTTCCTTT
*
7801079 TTTCCTTTTTCC-TT
1 TTTTCTTTTTCCTTT
*
7801093 TTTCCTTTTTCCTTT
1 TTTTCTTTTTCCTTT
*
7801108 TTTTCTTTTTTCTTT
1 TTTTCTTTTTCCTTT
7801123 ATTTTCTTT
1 -TTTTCTTT
7801132 CTTTTTTATT
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
13 11 0.15
14 27 0.38
15 26 0.36
16 8 0.11
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTTCCTTT
Found at i:7801129 original size:16 final size:15
Alignment explanation
Indices: 7801064--7801131 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
7801054 TTCTATTTCC
* *
7801064 TTTTCCTTTTTC-CT
1 TTTTCTTTTTTCTTT
* *
7801078 TTTTCCTTTTTCCTT
1 TTTTCTTTTTTCTTT
* *
7801093 TTTCCTTTTTCCTTT
1 TTTTCTTTTTTCTTT
7801108 TTTTCTTTTTTCTTT
1 TTTTCTTTTTTCTTT
7801123 ATTTTCTTT
1 -TTTTCTTT
7801132 CTTTTTTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 12 0.27
15 25 0.56
16 8 0.18
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTCTTTTTTCTTT
Found at i:7801134 original size:20 final size:19
Alignment explanation
Indices: 7801105--7801149 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
7801095 TCCTTTTTCC
*
7801105 TTTTTTTCTTTTTTCTTTA
1 TTTTTTTCTTTTTTATTTA
7801124 TTTTCTTTCTTTTTTATTTA
1 TTTT-TTTCTTTTTTATTTA
7801144 TGTTTT
1 T-TTTT
7801150 CTTCATTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 3 0.13
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTTCTTTTTTATTTA
Found at i:7801139 original size:16 final size:16
Alignment explanation
Indices: 7801078--7801142 Score: 64
Period size: 15 Copynumber: 4.2 Consensus size: 16
7801068 CCTTTTTCCT
* *
7801078 TTTTCCTTTTTCCTT-
1 TTTTCTTTTTTCTTTA
* *
7801093 TTTCCTTTTTCCTTT-
1 TTTTCTTTTTTCTTTA
7801108 TTTTCTTTTTTCTTTA
1 TTTTCTTTTTTCTTTA
7801124 TTTTCTTTCTTT-TTTA
1 TTTTCTTT-TTTCTTTA
7801140 TTT
1 TTT
7801143 ATGTTTTCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
15 24 0.57
16 15 0.36
17 3 0.07
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCTTTTTTCTTTA
Found at i:7805805 original size:14 final size:15
Alignment explanation
Indices: 7805786--7805820 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
7805776 TATACGAATG
*
7805786 AATAAATGTAAG-AA
1 AATAAATATAAGAAA
7805800 AATAAATATAAGAAA
1 AATAAATATAAGAAA
7805815 AATAAA
1 AATAAA
7805821 ATACGAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (15 bp):
AATAAATATAAGAAA
Found at i:7805990 original size:30 final size:28
Alignment explanation
Indices: 7805956--7806072 Score: 110
Period size: 30 Copynumber: 4.0 Consensus size: 28
7805946 TTCGAGGTAA
*
7805956 AAAAATGTAATTTTTGAGAAGTTTGAGGGC
1 AAAAATGTAATTTTGGA-AAGTTT-AGGGC
*
7805986 AAAAATGTAATTTTGGAAAAGTTTAGGGGT
1 AAAAATGTAATTTTGG-AAAGTTTA-GGGC
* *
7806016 TAAAATGTAATTTTGGAAAATTTTAGGGTC
1 AAAAATGTAATTTTGG-AAAGTTTAGGG-C
* *
7806046 -AAAATGTGATTTTTGGAAAGTTCAGGG
1 AAAAATGT-AATTTTGGAAAGTTTAGGG
7806073 ACCTTTTAGG
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
29 20 0.27
30 54 0.72
31 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAAATGTAATTTTGGAAAGTTTAGGGC
Found at i:7806024 original size:60 final size:59
Alignment explanation
Indices: 7805957--7806072 Score: 146
Period size: 59 Copynumber: 1.9 Consensus size: 59
7805947 TCGAGGTAAA
* * *
7805957 AAAATGTAATTTTTGAGAAGTTTGAGGG-CAAAAATGT-AATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGA-AAATTTGAGGGTC-AAAATGTGAATTTTGG-AAAGTTCAGGGGTT
* *
7806017 AAAATGTAATTTTGGAAAATTTTAGGGTCAAAATGTGATTTTTGGAAAGTTCAGGG
1 AAAATGTAATTTTGGAAAATTTGAGGGTCAAAATGTGAATTTTGGAAAGTTCAGGG
7806073 ACCTTTTAGG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 26 0.53
60 23 0.47
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (59 bp):
AAAATGTAATTTTGGAAAATTTGAGGGTCAAAATGTGAATTTTGGAAAGTTCAGGGGTT
Found at i:7807979 original size:12 final size:13
Alignment explanation
Indices: 7807962--7807990 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7807952 TTGTGGACAT
7807962 TTTAAATTT-AAA
1 TTTAAATTTAAAA
7807974 TTTAAATTTAAAA
1 TTTAAATTTAAAA
7807987 TTTA
1 TTTA
7807991 TTTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTAAATTTAAAA
Found at i:7814045 original size:9 final size:9
Alignment explanation
Indices: 7814033--7814104 Score: 67
Period size: 9 Copynumber: 7.9 Consensus size: 9
7814023 CAAAAATAAA
7814033 AAAAATATT
1 AAAAATATT
7814042 AAAAAT-TT
1 AAAAATATT
* *
7814050 CAAAAATGTA
1 -AAAAATATT
7814060 AAAAATATT
1 AAAAATATT
*
7814069 TAAAATATT
1 AAAAATATT
7814078 AAAATATATTT
1 AAAA-ATA-TT
7814089 AAAAAT-TT
1 AAAAATATT
*
7814097 GAAAATAT
1 AAAAATAT
7814105 ATCTCACCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
8 9 0.17
9 31 0.60
10 6 0.12
11 6 0.12
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
AAAAATATT
Found at i:7814056 original size:27 final size:27
Alignment explanation
Indices: 7814021--7814074 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7814011 GAAAATCAAA
7814021 TTCAAAAATAAAAAAAATATTAAAAAT
1 TTCAAAAATAAAAAAAATATTAAAAAT
** *
7814048 TTCAAAAATGTAAAAAATATTTAAAAT
1 TTCAAAAATAAAAAAAATATTAAAAAT
7814075 ATTAAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (27 bp):
TTCAAAAATAAAAAAAATATTAAAAAT
Found at i:7814101 original size:20 final size:19
Alignment explanation
Indices: 7814033--7814106 Score: 73
Period size: 19 Copynumber: 3.9 Consensus size: 19
7814023 CAAAAATAAA
*
7814033 AAAAATATTAAAA-AT-TTC
1 AAAAAT-TTAAAATATATTT
* *
7814051 AAAAATGTAAAAAATATTT
1 AAAAATTTAAAATATATTT
7814070 -AAAATATTAAAATATATTT
1 AAAAAT-TTAAAATATATTT
7814089 AAAAATTTGAAAATATAT
1 AAAAATTT-AAAATATAT
7814107 CTCACCATAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
17 5 0.11
18 13 0.28
19 15 0.32
20 14 0.30
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (19 bp):
AAAAATTTAAAATATATTT
Found at i:7815686 original size:6 final size:6
Alignment explanation
Indices: 7815659--7815755 Score: 72
Period size: 6 Copynumber: 16.0 Consensus size: 6
7815649 TTTTTTTATT
* * * * *
7815659 TTTTAA TTTCAA ATTTAC TTTTAA TTTTAA TTCTAA ATTTAA TTTTCAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT-AA
* * * *
7815708 -TTTCA -TTTAA TTTTCA TTTTAA TTTCAAA TTTTAA TTTCAAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTT-TAA TTTTAA TTT-TAA TTTTAA
7815756 ATAAATTTTT
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
5 5 0.07
6 52 0.75
7 12 0.17
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTTAA
Found at i:7815741 original size:13 final size:13
Alignment explanation
Indices: 7815659--7815755 Score: 71
Period size: 13 Copynumber: 7.5 Consensus size: 13
7815649 TTTTTTTATT
7815659 TTTTAATTTCAAA
1 TTTTAATTTCAAA
* *
7815672 -TTTACTTT-TAA
1 TTTTAATTTCAAA
7815683 TTTTAA-TTCTAAA
1 TTTTAATTTC-AAA
*
7815696 -TTTAATTTTCAATT
1 TTTTAA-TTTCAA-A
7815710 TCATTTAATTTTC--A
1 T--TTTAA-TTTCAAA
7815724 TTTTAATTTCAAA
1 TTTTAATTTCAAA
7815737 TTTTAATTTCAAA
1 TTTTAATTTCAAA
7815750 TTTTAA
1 TTTTAA
7815756 ATAAATTTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
11 8 0.12
12 21 0.31
13 24 0.36
14 4 0.06
17 10 0.15
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAATTTCAAA
Found at i:7815745 original size:35 final size:35
Alignment explanation
Indices: 7815660--7815747 Score: 92
Period size: 35 Copynumber: 2.5 Consensus size: 35
7815650 TTTTTTATTT
*
7815660 TTTAA-TTTCAAATTTACTTTTAATTTTAATTCTAAA
1 TTTAATTTTC-AATTT-CATTTAATTTTAATTCTAAA
* *
7815696 TTTAATTTTCAATTTCATTTAATTTTCATT-TTAA
1 TTTAATTTTCAATTTCATTTAATTTTAATTCTAAA
7815730 TTTCAAATTTT-AATTTCA
1 TTT--AATTTTCAATTTCA
7815748 AATTTTAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
34 6 0.13
35 20 0.43
36 16 0.35
37 4 0.09
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (35 bp):
TTTAATTTTCAATTTCATTTAATTTTAATTCTAAA
Found at i:7816370 original size:41 final size:41
Alignment explanation
Indices: 7816324--7816413 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
7816314 AATATAAACT
*
7816324 TGTATACTTTGTATACTTCTATAATTTTACAACGTTTTGTA
1 TGTATACTTTGTATACTTCTATAACTTTACAACGTTTTGTA
*
7816365 TGTATAATTTGTATACTTCTATAACTTTACAACGTTTTGTA
1 TGTATACTTTGTATACTTCTATAACTTTACAACGTTTTGTA
7816406 TGTATACT
1 TGTATACT
7816414 CATAGACATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (41 bp):
TGTATACTTTGTATACTTCTATAACTTTACAACGTTTTGTA
Found at i:7820447 original size:25 final size:23
Alignment explanation
Indices: 7820419--7820465 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7820409 AGTTTGATCT
7820419 AAATTAAATTCTAAAAAAATAATTA
1 AAATTAAA-TCT-AAAAAATAATTA
*
7820444 AAATTAAATCTAAATAATAATT
1 AAATTAAATCTAAAAAATAATT
7820466 CTCTAATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 3 0.14
25 8 0.38
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATTAAATCTAAAAAATAATTA
Found at i:7829341 original size:22 final size:22
Alignment explanation
Indices: 7829315--7829359 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7829305 ATGTATGGGA
7829315 TGCGAGTGGTGTTTGTCGGAAT
1 TGCGAGTGGTGTTTGTCGGAAT
7829337 TGCGAGTGGTGTTTGTCGGAAT
1 TGCGAGTGGTGTTTGTCGGAAT
7829359 T
1 T
7829360 AATTGATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.09, G:0.40, T:0.38
Consensus pattern (22 bp):
TGCGAGTGGTGTTTGTCGGAAT
Found at i:7831845 original size:18 final size:19
Alignment explanation
Indices: 7831798--7831846 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
7831788 TCTTGAATTA
*
7831798 TGAAT-TTATTTTTATTTT
1 TGAATATTATTTATATTTT
7831816 TGAATATT-TTTATAGTTTT
1 TGAATATTATTTATA-TTTT
7831835 T-AA-ATTATTTAT
1 TGAATATTATTTAT
7831847 TGACATGACA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.11
18 17 0.63
19 7 0.26
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (19 bp):
TGAATATTATTTATATTTT
Found at i:7833668 original size:6 final size:6
Alignment explanation
Indices: 7833652--7833685 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7833642 GTAAAGGGCG
*
7833652 GCCACT ACCACT GCCACT GCCACT GCCACT GCCA
1 GCCACT GCCACT GCCACT GCCACT GCCACT GCCA
7833686 TGGATGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.50, G:0.15, T:0.15
Consensus pattern (6 bp):
GCCACT
Found at i:7836595 original size:31 final size:31
Alignment explanation
Indices: 7836560--7836619 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
7836550 ACTTGATAAC
7836560 TCAATAACTTAAAT-AAAGACTTTTGAATAGT
1 TCAATAACTTAAATGAAA-ACTTTTGAATAGT
*
7836591 TCAATAACTTAAATGAAAATTTTTGAATA
1 TCAATAACTTAAATGAAAACTTTTGAATA
7836620 ATTTAATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (31 bp):
TCAATAACTTAAATGAAAACTTTTGAATAGT
Found at i:7841498 original size:22 final size:22
Alignment explanation
Indices: 7841470--7841512 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7841460 TAAACCAAAT
7841470 AATTAAAATAATAACATTTTAG
1 AATTAAAATAATAACATTTTAG
*
7841492 AATTAAAATATTAACATTTTA
1 AATTAAAATAATAACATTTTA
7841513 AAATGCTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTAAAATAATAACATTTTAG
Found at i:7842206 original size:28 final size:27
Alignment explanation
Indices: 7842142--7842207 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
7842132 CAATTAGATT
7842142 TATTTAAAATAAAAACATTAAATTTAAA
1 TATTT-AAATAAAAACATTAAATTTAAA
**
7842170 T-TAAAAAATAAAAA-ATTATAATATTAAA
1 TAT-TTAAATAAAAACATTA-AAT-TTAAA
7842198 TATTTAAATA
1 TATTTAAATA
7842208 TTAAAAACCG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
26 4 0.13
27 13 0.43
28 12 0.40
29 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (27 bp):
TATTTAAATAAAAACATTAAATTTAAA
Found at i:7842944 original size:10 final size:10
Alignment explanation
Indices: 7842929--7842953 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7842919 AAAAGTATAA
7842929 TTTTATTAAT
1 TTTTATTAAT
7842939 TTTTATTAAT
1 TTTTATTAAT
7842949 TTTTA
1 TTTTA
7842954 GGGATGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:7848683 original size:22 final size:22
Alignment explanation
Indices: 7848655--7848697 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7848645 TAAACCAAAT
7848655 AATTAAAATAATAACATTTTAG
1 AATTAAAATAATAACATTTTAG
*
7848677 AATTAAAATATTAACATTTTA
1 AATTAAAATAATAACATTTTA
7848698 AAATGCTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTAAAATAATAACATTTTAG
Found at i:7849391 original size:28 final size:27
Alignment explanation
Indices: 7849327--7849392 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
7849317 CAATTAGATT
7849327 TATTTAAAATAAAAACATTAAATTTAAA
1 TATTT-AAATAAAAACATTAAATTTAAA
**
7849355 T-TAAAAAATAAAAA-ATTATAATATTAAA
1 TAT-TTAAATAAAAACATTA-AAT-TTAAA
7849383 TATTTAAATA
1 TATTTAAATA
7849393 TTAAAAACCG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
26 4 0.13
27 13 0.43
28 12 0.40
29 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (27 bp):
TATTTAAATAAAAACATTAAATTTAAA
Found at i:7850129 original size:10 final size:10
Alignment explanation
Indices: 7850114--7850138 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7850104 AAAAGTATAA
7850114 TTTTATTAAT
1 TTTTATTAAT
7850124 TTTTATTAAT
1 TTTTATTAAT
7850134 TTTTA
1 TTTTA
7850139 GGGATGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:7855868 original size:22 final size:22
Alignment explanation
Indices: 7855840--7855882 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7855830 TAAACCAAAT
7855840 AATTAAAATAATAACATTTTAG
1 AATTAAAATAATAACATTTTAG
*
7855862 AATTAAAATATTAACATTTTA
1 AATTAAAATAATAACATTTTA
7855883 AAATGCTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTAAAATAATAACATTTTAG
Found at i:7861096 original size:23 final size:23
Alignment explanation
Indices: 7861052--7861159 Score: 66
Period size: 23 Copynumber: 4.8 Consensus size: 23
7861042 TTATTCTATT
*
7861052 ATAAATATTAAAATAATATTAAG
1 ATAAATATTAAAAAAATATTAAG
*
7861075 ATAATTATATAAAAAAAT-TT-A-
1 ATAAATAT-TAAAAAAATATTAAG
** *
7861096 ATAAATAAAAAAATATAAAATT-A-
1 ATAAATATTAAAA-A-AATATTAAG
* *
7861119 ATAAATATTAAAATAATA-TAAT
1 ATAAATATTAAAAAAATATTAAG
*
7861141 ATAAATATTTTAAAAAATA
1 ATAAATA-TTAAAAAAATA
7861160 ATATGAGTGT
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
20 5 0.08
21 11 0.17
22 10 0.15
23 32 0.48
24 8 0.12
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (23 bp):
ATAAATATTAAAAAAATATTAAG
Found at i:7861116 original size:15 final size:15
Alignment explanation
Indices: 7861083--7861145 Score: 54
Period size: 15 Copynumber: 4.0 Consensus size: 15
7861073 AGATAATTAT
*
7861083 ATAAAAAAATTTAATAA
1 ATAAAAAAATAT-A-AA
7861100 ATAAAAAAATATAAA
1 ATAAAAAAATATAAA
* *
7861115 ATTAATAAATATTAAA
1 ATAAAAAAATA-TAAA
* *
7861131 ATAATATAATATAAA
1 ATAAAAAAATATAAA
7861146 TATTTTAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 15 0.39
16 12 0.32
17 11 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAAAAAATATAAA
Done.