Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 27 of 125
Found at i:7868263 original size:20 final size:19
Alignment explanation
Indices: 7868221--7868272 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
7868211 TCTCTCAACA
7868221 AAAATTACAAAATAATTTTT
1 AAAATT-CAAAATAATTTTT
*
7868241 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
7868259 ATAAATTCTAAAAT
1 A-AAATTC-AAAAT
7868273 TTAATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 6 0.21
19 12 0.41
20 11 0.38
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:7875838 original size:29 final size:30
Alignment explanation
Indices: 7875806--7876198 Score: 209
Period size: 29 Copynumber: 13.5 Consensus size: 30
7875796 AAATCGAGGT
*
7875806 TAAAATGG-AATTTT-GGAAAGTTTAAGGGG
1 TAAAATGGTAATTTTGGGAAA-TTTCAGGGG
* *
7875835 TAAAATGGTAATTTTGGTGAAA--TCTGGGT
1 TAAAATGGTAATTTTGG-GAAATTTCAGGGG
* **
7875864 TAAAAATGG-GATTTTGGGAAATTTGGGGGG
1 T-AAAATGGTAATTTTGGGAAATTTCAGGGG
*
7875894 TAAAATGGTAATTTTGGTGAAA-TT-AGGGT
1 TAAAATGGTAATTTTGG-GAAATTTCAGGGG
* *
7875923 TAAAAAT-G-AGATTTTGGGAAAATTCGGGGG
1 T-AAAATGGTA-ATTTTGGGAAATTTCAGGGG
*
7875953 TAAAATGGTAATTTTGGTGAAA--TCAGGGT
1 TAAAATGGTAATTTTGG-GAAATTTCAGGGG
* * *
7875982 TAAAAATGG-GATTTT-AGAAAGTTC-GAGGG
1 T-AAAATGGTAATTTTGGGAAATTTCAG-GGG
*
7876011 TAAAATGGTAATTTTGGTGAAA--TCAGGGT
1 TAAAATGGTAATTTTGG-GAAATTTCAGGGG
* *
7876040 TAAAAATGG-GATTTT-GGAAAGTTTGA-GGG
1 T-AAAATGGTAATTTTGGGAAA-TTTCAGGGG
*
7876069 TAAAATGGTAATTTTGGTGAAA--TCAGGGT
1 TAAAATGGTAATTTTGG-GAAATTTCAGGGG
* *
7876098 TAAAATGG-GATTTT-GGAAAGTTT-GGGGG
1 TAAAATGGTAATTTTGGGAAA-TTTCAGGGG
*
7876126 TAAAACGGTAATTTTTGGTGAAA--TC-GGGG
1 TAAAATGGTAA-TTTTGG-GAAATTTCAGGGG
*
7876155 TTGAAAATGGT-ATTTT-AGAAAGTTT--GGGG
1 -T-AAAATGGTAATTTTGGGAAA-TTTCAGGGG
7876184 TAAAATGGTAATTTT
1 TAAAATGGTAATTTT
7876199 TGGACAGTCC
Statistics
Matches: 286, Mismatches: 33, Indels: 91
0.70 0.08 0.22
Matches are distributed among these distances:
26 4 0.01
27 21 0.07
28 48 0.17
29 110 0.38
30 69 0.24
31 26 0.09
32 8 0.03
ACGTcount: A:0.34, C:0.02, G:0.31, T:0.33
Consensus pattern (30 bp):
TAAAATGGTAATTTTGGGAAATTTCAGGGG
Found at i:7875847 original size:59 final size:59
Alignment explanation
Indices: 7875784--7876198 Score: 571
Period size: 59 Copynumber: 7.1 Consensus size: 59
7875774 GGTAAAAATA
* * *
7875784 TAATTTTGCATGAAATC-GAGGTT-AAAATGGAATTTTGGAAAGTTTAAGGGGTAAAATGG
1 TAATTTTG-GTGAAATCAG-GGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
* *
7875843 TAATTTTGGTGAAATCTGGGTTAAAAATGGGATTTTGGGAAA-TTTGGGGGGTAAAATGG
1 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTT-GGAAAGTTTGAGGGGTAAAATGG
* * * *
7875902 TAATTTTGGTGAAATTAGGGTTAAAAATGAGATTTTGGGAAAATTCG-GGGGTAAAATGG
1 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTT-GGAAAGTTTGAGGGGTAAAATGG
* *
7875961 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTAGAAAGTTCGA-GGGTAAAATGG
1 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
7876019 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGA-GGGTAAAATGG
1 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
*
7876077 TAATTTTGGTGAAATCAGGGTT-AAAATGGGATTTTGGAAAGTTTG-GGGGTAAAACGG
1 TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
* * * *
7876134 TAATTTTTGGTGAAATCGGGGTTGAAAATGGTATTTTAGAAAGTTT--GGGGTAAAATGG
1 TAA-TTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
7876192 TAATTTT
1 TAATTTT
7876199 TGGACAGTCC
Statistics
Matches: 329, Mismatches: 19, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
57 40 0.12
58 140 0.43
59 141 0.43
60 8 0.02
ACGTcount: A:0.34, C:0.02, G:0.30, T:0.33
Consensus pattern (59 bp):
TAATTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGAAAGTTTGAGGGGTAAAATGG
Found at i:7877548 original size:17 final size:15
Alignment explanation
Indices: 7877498--7877552 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 15
7877488 ATGGGCATTT
7877498 AATTT-AATTT-T-A
1 AATTTAAATTTATAA
7877510 AATTTAAATTTATAA
1 AATTTAAATTTATAA
7877525 TAGATTTAAATTGTATACA
1 -A-ATTTAAATT-TATA-A
7877544 AATTTAAAT
1 AATTTAAAT
7877553 CCAAAATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.14
13 5 0.14
14 1 0.03
15 1 0.03
16 1 0.03
17 17 0.47
18 5 0.14
19 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (15 bp):
AATTTAAATTTATAA
Found at i:7878542 original size:26 final size:26
Alignment explanation
Indices: 7878513--7878568 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7878503 ATTTTTAATT
*
7878513 TAAAGGAATAAATTTAAATTAAATAA
1 TAAAGGAATAAATTTAAATTAAAAAA
7878539 TAAAGGAATAAATTTAAATTAAAAAA
1 TAAAGGAATAAATTTAAATTAAAAAA
7878565 TAAA
1 TAAA
7878569 ATTTAATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (26 bp):
TAAAGGAATAAATTTAAATTAAAAAA
Found at i:7891756 original size:31 final size:31
Alignment explanation
Indices: 7891721--7891785 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
7891711 CGCAACAGTG
*
7891721 TAAGGTGAAAATTCGATAGTGGGTTCATATT
1 TAAGGTGAAAATTCGATAGTGGGTTCAGATT
* *
7891752 TAAGGTGAGAATTCGATATTGGGTTCAGATT
1 TAAGGTGAAAATTCGATAGTGGGTTCAGATT
7891783 TAA
1 TAA
7891786 CGTGGATTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (31 bp):
TAAGGTGAAAATTCGATAGTGGGTTCAGATT
Found at i:7894123 original size:26 final size:26
Alignment explanation
Indices: 7894094--7894147 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
7894084 CCATGATGCT
7894094 AACAATATGTTACAAACAATAGATAC
1 AACAATATGTTACAAACAATAGATAC
7894120 AACAATATGTTACAAACAATAGATAC
1 AACAATATGTTACAAACAATAGATAC
7894146 AA
1 AA
7894148 ACCAATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (26 bp):
AACAATATGTTACAAACAATAGATAC
Found at i:7894133 original size:13 final size:14
Alignment explanation
Indices: 7894094--7894149 Score: 73
Period size: 13 Copynumber: 4.2 Consensus size: 14
7894084 CCATGATGCT
7894094 AACAATATGTTACA
1 AACAATATGTTACA
*
7894108 AACAATA-GATAC-
1 AACAATATGTTACA
7894120 AACAATATGTTACA
1 AACAATATGTTACA
*
7894134 AACAATA-GATACA
1 AACAATATGTTACA
7894147 AAC
1 AAC
7894150 CAATTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
12 7 0.19
13 16 0.43
14 14 0.38
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.21
Consensus pattern (14 bp):
AACAATATGTTACA
Found at i:7895242 original size:29 final size:30
Alignment explanation
Indices: 7895196--7895252 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
7895186 ATTTTATAAT
**
7895196 AAAAAATTGGTTATTTTATTTAAATAATCC
1 AAAAAATTGGTTATTTTACATAAATAATCC
*
7895226 AAAAAATTTGTTA-TTTACATAAATAAT
1 AAAAAATTGGTTATTTTACATAAATAAT
7895253 TATAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (30 bp):
AAAAAATTGGTTATTTTACATAAATAATCC
Found at i:7895400 original size:42 final size:42
Alignment explanation
Indices: 7895311--7895404 Score: 154
Period size: 42 Copynumber: 2.2 Consensus size: 42
7895301 TGGGTTTGAA
*
7895311 AACCTTAATGTTAGGGTTTAAAAATAATTTTTTAGGTTTGGG
1 AACCTTAATGCTAGGGTTTAAAAATAATTTTTTAGGTTTGGG
*
7895353 AACCTTAATGCTAGGGTTTAAAAAATAATTTTTTGGGTTTGGG
1 AACCTTAATGCTAGGGTTT-AAAAATAATTTTTTAGGTTTGGG
7895396 -ACCTTAATG
1 AACCTTAATG
7895405 GCCGGTATCA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (42 bp):
AACCTTAATGCTAGGGTTTAAAAATAATTTTTTAGGTTTGGG
Found at i:7896031 original size:20 final size:20
Alignment explanation
Indices: 7896008--7896060 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
7895998 CTAAGACATA
7896008 TTTAAAGAATAATAAATTAT
1 TTTAAAGAATAATAAATTAT
*
7896028 TTTAAAGCATAATAAATTAT
1 TTTAAAGAATAATAAATTAT
*
7896048 TTCAAAGCAATAA
1 TTTAAAG-AATAA
7896061 ACTTAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (20 bp):
TTTAAAGAATAATAAATTAT
Found at i:7897923 original size:25 final size:23
Alignment explanation
Indices: 7897895--7897940 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
7897885 GTTAGATCCA
7897895 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
7897920 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
7897941 CCCTAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:7898986 original size:15 final size:16
Alignment explanation
Indices: 7898960--7898992 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7898950 CTCAAACACA
7898960 CTTTTGTCTTTTTTTT
1 CTTTTGTCTTTTTTTT
7898976 CTTTT-TCTTTTTTTT
1 CTTTTGTCTTTTTTTT
7898991 CT
1 CT
7898993 CAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (16 bp):
CTTTTGTCTTTTTTTT
Found at i:7898999 original size:26 final size:26
Alignment explanation
Indices: 7898970--7899028 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7898960 CTTTTGTCTT
*
7898970 TTTTTTCTT-TTTCTTTTTTTTCTCAA
1 TTTTTTCTTAATTCTTTTTTTT-TCAA
7898996 TTTTTT-TTCAATTCTTTTTTTTTCAA
1 TTTTTTCTT-AATTCTTTTTTTTTCAA
7899022 TTTTTTC
1 TTTTTTC
7899029 GATTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.07
26 16 0.55
27 11 0.38
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTTTTCTTAATTCTTTTTTTTTCAA
Found at i:7899001 original size:15 final size:14
Alignment explanation
Indices: 7898996--7899027 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
7898986 TTTTTCTCAA
7898996 TTTTTTTTCAATTCT
1 TTTTTTTTCAATT-T
7899011 TTTTTTTTCAATTT
1 TTTTTTTTCAATTT
7899025 TTT
1 TTT
7899028 CGATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTTTCAATTT
Found at i:7900037 original size:11 final size:11
Alignment explanation
Indices: 7900009--7900044 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
7899999 AATTTTGAAC
7900009 TTTTCAATTTT
1 TTTTCAATTTT
7900020 GTTTTCAATTTT
1 -TTTTCAATTTT
7900032 TTTTCAATTTT
1 TTTTCAATTTT
7900043 TT
1 TT
7900045 AAAAACATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.72
Consensus pattern (11 bp):
TTTTCAATTTT
Found at i:7903349 original size:13 final size:14
Alignment explanation
Indices: 7903313--7903362 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
7903303 AAATGGTCTA
7903313 AAAATAAATAACAGC
1 AAAATAAATAA-AGC
*
7903328 AAGATAAATAAA-C
1 AAAATAAATAAAGC
**
7903341 AAAATAAATAAATA
1 AAAATAAATAAAGC
7903355 AAAATAAA
1 AAAATAAA
7903363 AACTAAATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 12 0.39
14 9 0.29
15 10 0.32
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.16
Consensus pattern (14 bp):
AAAATAAATAAAGC
Found at i:7907013 original size:45 final size:46
Alignment explanation
Indices: 7906949--7907039 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 46
7906939 ACAATCACTT
7906949 TTCATTCTAAGTATCTAGATCTAATGTCCC-ATTCATATATATATA
1 TTCATTCTAAGTATCTAGATCTAATGTCCCGATTCATATATATATA
7906994 TTCATTCTAAGTATCTAGATCTAATGTCCCGATTCATATATATATA
1 TTCATTCTAAGTATCTAGATCTAATGTCCCGATTCATATATATATA
7907040 ACCATTTCAT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 30 0.67
46 15 0.33
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.42
Consensus pattern (46 bp):
TTCATTCTAAGTATCTAGATCTAATGTCCCGATTCATATATATATA
Found at i:7907714 original size:2 final size:2
Alignment explanation
Indices: 7907707--7907735 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7907697 ACATGTAATC
7907707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7907736 ATTGGTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7911052 original size:22 final size:24
Alignment explanation
Indices: 7911008--7911066 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 24
7910998 GCCGAAGCGG
* *
7911008 ATAAACAGAGAGCACAGATGTGC-
1 ATAATCAGAGAGCACAGACGTGCA
7911031 A-AATCAGAGAGCACTA-ACGTGCTA
1 ATAATCAGAGAGCAC-AGACGTGC-A
7911055 ATAATCAGAGAG
1 ATAATCAGAGAG
7911067 TGCACTAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 17 0.57
23 2 0.07
24 1 0.03
25 10 0.33
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (24 bp):
ATAATCAGAGAGCACAGACGTGCA
Found at i:7912934 original size:13 final size:13
Alignment explanation
Indices: 7912875--7912943 Score: 56
Period size: 13 Copynumber: 5.4 Consensus size: 13
7912865 TATATATATA
7912875 TTCATATAACCAT
1 TTCATATAACCAT
*
7912888 TTCATGA-AATCA-
1 TTCAT-ATAACCAT
7912900 TTCATTATAACCAT
1 TTCA-TATAACCAT
* *
7912914 ATT-TTATAATCAT
1 -TTCATATAACCAT
7912927 TTCATAT-ACCAT
1 TTCATATAACCAT
7912939 TTCAT
1 TTCAT
7912944 TTATCCATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
12 16 0.36
13 25 0.57
14 1 0.02
15 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.43
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:7913589 original size:158 final size:158
Alignment explanation
Indices: 7913247--7913691 Score: 691
Period size: 158 Copynumber: 2.8 Consensus size: 158
7913237 CAAGCTGTGG
* * * ** *
7913247 GGCTACACGATGCTGCTCACACGAGTTGTGAAGAATCCACAATAAATGTC-GGGCCTCAGCCATC
1 GGCTACGCGATGCTGCTCACACGAGCTGTGGAGAATCCACAACCAATG-CAGGACCTCAGCCATC
* * *
7913311 GGTAGGACATCTAAGACCAGCATCCATATAACCTGTAATGCT--CAC-AGTTGTGAAATGGGTCT
65 GGTAGGACATCTAAGACCAGCACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATGGGTCT
* *
7913373 ACTCATACGAGCTGTGGGTCGAGATTTTA
130 GCTCATACGAGCTGTGGGTAGAGATTTTA
*
7913402 GGCTACGCGATGCTGCTCACACGAGCTGTGGAGAATCCACAACCAATGCAGGACCTCAGCCTTCG
1 GGCTACGCGATGCTGCTCACACGAGCTGTGGAGAATCCACAACCAATGCAGGACCTCAGCCATCG
7913467 GTAGGACATCTAAGACCAGCACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATGGGTCTG
66 GTAGGACATCTAAGACCAGCACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATGGGTCTG
7913532 CTCATACGAGCTGTGGGTAGAGATTTTA
131 CTCATACGAGCTGTGGGTAGAGATTTTA
* * *
7913560 GGCTATGCGATGCTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAACCATCG
1 GGCTACGCGATGCTGCTCACACGAGCTGTGGAGAATCCACAACCAATGCAGGACCTCAGCCATCG
* * *
7913625 GTAGGACATCTAAGACCAGAACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATAGGTGTG
66 GTAGGACATCTAAGACCAGCACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATGGGTCTG
7913690 CT
131 CT
7913692 TCTCCGCAAC
Statistics
Matches: 267, Mismatches: 19, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
154 1 0.00
155 96 0.36
157 3 0.01
158 167 0.63
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (158 bp):
GGCTACGCGATGCTGCTCACACGAGCTGTGGAGAATCCACAACCAATGCAGGACCTCAGCCATCG
GTAGGACATCTAAGACCAGCACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATGGGTCTG
CTCATACGAGCTGTGGGTAGAGATTTTA
Found at i:7913766 original size:99 final size:99
Alignment explanation
Indices: 7913595--7913774 Score: 288
Period size: 99 Copynumber: 1.8 Consensus size: 99
7913585 CTGTGGAGAA
* **
7913595 TCCGCAACCAATGCAGGACCTCAACCATCGGTAGGACATCTAAGACCAGAACCCATATAACCTGT
1 TCCGCAACCAATGCAGGACCTCAACCATCGGCAACACATCTAAGACCAGAACCCATATAACCTGT
7913660 AATGCTCACACAAGCTGTAAAATAGGTGTGCTTC
66 AATGCTCACACAAGCTGTAAAATAGGTGTGCTTC
* * * *
7913694 TCCGCAACCAATGCAGGACCTCAGCTATCGGCAACACATCTAAGACCAGCACCTATATAACCTGT
1 TCCGCAACCAATGCAGGACCTCAACCATCGGCAACACATCTAAGACCAGAACCCATATAACCTGT
*
7913759 AATGCTCACACGAGCT
66 AATGCTCACACAAGCT
7913775 ATGAAATGGG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (99 bp):
TCCGCAACCAATGCAGGACCTCAACCATCGGCAACACATCTAAGACCAGAACCCATATAACCTGT
AATGCTCACACAAGCTGTAAAATAGGTGTGCTTC
Found at i:7913908 original size:257 final size:257
Alignment explanation
Indices: 7913441--7913924 Score: 781
Period size: 257 Copynumber: 1.9 Consensus size: 257
7913431 GGAGAATCCA
* **
7913441 CAACCAATGCAGGACCTCAGCCTTCGGTAGGACATCTAAGACCAGCACCCATATAACCTGTAATG
1 CAACCAATGCAGGACCTCAGCCTTCGGCAACACATCTAAGACCAGCACCCATATAACCTGTAATG
* * * * *
7913506 CTCACACAAGCTGTAAAATGGGTCTGCTCATACGAGCTGTGGGTAGAGATTTTAGGCTATGCGAT
66 CTCACACAAGCTATAAAATGGGTCTGCTCACACGAGCTGTGGGTAGAGATGTTAGACTACGCGAT
* *
7913571 GCTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAACCATCGGTAGGACATCT
131 GCTGCTCACACGAGCTGTGAAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAGGACATCT
7913636 AAGACCAGAACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATAGGTGTGCTTCTCCG
196 AAGACCAGAACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATAGGTGTGCTTCTCCG
*
7913698 CAACCAATGCAGGACCTCAG-CTATCGGCAACACATCTAAGACCAGCACCTATATAACCTGTAAT
1 CAACCAATGCAGGACCTCAGCCT-TCGGCAACACATCTAAGACCAGCACCCATATAACCTGTAAT
* * * * *
7913762 GCTCACACGAGCTATGAAATGGGTCTGCTGACACGAGCTGTGGGTCGAGATGTTAGACTACGTGA
65 GCTCACACAAGCTATAAAATGGGTCTGCTCACACGAGCTGTGGGTAGAGATGTTAGACTACGCGA
*
7913827 TGCTGCTCACACGAGCTGTGAAGAATTCGCAACAAATGCAGGACCTCAACCATCGGTAGGACATC
130 TGCTGCTCACACGAGCTGTGAAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAGGACATC
* *
7913892 TAAGATCAGCACCCATATAACCTGTAATGCTCA
195 TAAGACCAGAACCCATATAACCTGTAATGCTCA
7913925 TACGAGTTGT
Statistics
Matches: 207, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
256 2 0.01
257 205 0.99
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (257 bp):
CAACCAATGCAGGACCTCAGCCTTCGGCAACACATCTAAGACCAGCACCCATATAACCTGTAATG
CTCACACAAGCTATAAAATGGGTCTGCTCACACGAGCTGTGGGTAGAGATGTTAGACTACGCGAT
GCTGCTCACACGAGCTGTGAAGAATCCGCAACAAATGCAGGACCTCAACCATCGGTAGGACATCT
AAGACCAGAACCCATATAACCTGTAATGCTCACACAAGCTGTAAAATAGGTGTGCTTCTCCG
Found at i:7917185 original size:15 final size:15
Alignment explanation
Indices: 7917165--7917193 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7917155 AACATATATT
7917165 CAATAAAATGCAAAG
1 CAATAAAATGCAAAG
7917180 CAATAAAATGCAAA
1 CAATAAAATGCAAA
7917194 AGATCACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (15 bp):
CAATAAAATGCAAAG
Found at i:7918360 original size:41 final size:42
Alignment explanation
Indices: 7918282--7918418 Score: 112
Period size: 41 Copynumber: 3.4 Consensus size: 42
7918272 AACATGTAAT
* * *
7918282 TAAATAAA-AATATAAAAAC-ATAAAAT-TTAATGATAAATAAA
1 TAAATAAACAAGATAATAACAATAAAATGAT-ATG-TAAATAAA
7918323 TAAATAAACAAGATAATAACAAT-AAATGTATAT-TAAATAAA
1 TAAATAAACAAGATAATAACAATAAAATG-ATATGTAAATAAA
* * * *
7918364 -AAATAATAAAAGA-GATAACAATAAAATGATCTGAAAATAAA
1 TAAATAA-ACAAGATAATAACAATAAAATGATATGTAAATAAA
7918405 T-AAT-AACAAGATAA
1 TAAATAAACAAGATAA
7918419 ATAAACAAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
39 5 0.06
40 19 0.24
41 36 0.46
42 13 0.17
43 4 0.05
44 1 0.01
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.24
Consensus pattern (42 bp):
TAAATAAACAAGATAATAACAATAAAATGATATGTAAATAAA
Found at i:7918431 original size:13 final size:13
Alignment explanation
Indices: 7918397--7918446 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
7918387 AAATGATCTG
7918397 AAAATAAATAATAAC
1 AAAATAAAT-A-AAC
*
7918412 AAGATAAATAAAC
1 AAAATAAATAAAC
*
7918425 AAAATAAATAAATA
1 AAAATAAATAAA-C
7918439 AAAATAAA
1 AAAATAAA
7918447 AATTAAATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 14 0.45
14 9 0.29
15 8 0.26
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (13 bp):
AAAATAAATAAAC
Found at i:7921818 original size:147 final size:148
Alignment explanation
Indices: 7921560--7922863 Score: 766
Period size: 147 Copynumber: 8.8 Consensus size: 148
7921550 TAAGATTCGC
* * * * * * *
7921560 CATTGCGGCTTCAATCTGTTCCCTCTTTGGTTTCAAGGTGTTAGATCCACCGTCGTGGCTTCAAT
1 CATTGCGACTTCAATCT-TTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAAT
* * * * * * *
7921625 CTATCCCT-TTTTGGTTTTACGGTATTAGGTCAGCCGTTCCGACTTCAACCTATCCCTCTTCGA-
65 CTATCCCTCTTTCGATTTTAAGGTGTAAGTTC-GCCGTTGCGACTTCAACCTATCCCTCTTCGAG
7921688 TTTTAAGGTGTAAGATCCAT
129 TTTTAAGGTGTAAGATCCAT
* * * * * * * *
7921708 CATTGTGACTTCAATCTTTTCCTATTCGATTTTTGGGTGTTAGGTCCACCGTTGCGGCTTCAACC
1 CATTGCGACTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAATC
* * * * * * * * *
7921773 TATCCCTCTTTAG-TTTTAAGGTGTAAGATTCACCGTTGTGGCTTCAATCTTTTCCTCTTTGATT
66 TATCCCTCTTTCGATTTTAAGGTGTAAG-TTCGCCGTTGCGACTTCAACCTATCCCTCTTCGA-G
** * *
7921837 TTTTTGGGTGTTAGATCCAA
129 TTTTAAGGTGTAAGATCCAT
* * * * * * * * ** * *
7921857 CGTTACGGCTTAAATCTATCCCTCTTCTATTTTAGGATGTTAGGTCTGCCGTTGCGACTTCAACC
1 CATTGCGACTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAATC
* * * * * * *
7921922 TATCCCT-ATTCGATTTTAAGGTGTAAGATCCGTCGTTGTGACTTCAATCTTTCCCTCTTTG-GT
66 TATCCCTCTTTCGATTTTAAGGTGTAAG-TTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAGT
** * * **
7921985 TTTTGGGTGTTAGGTCCGC
130 TTTAAGGTGTAAGATCCAT
* * * * * * * * *
7922004 CATTGC-AGCTTCAACCTATCCCTTTTCAATTTTAAGGTGTAAGATCTATCGTAGTGACTTCAAT
1 CATTGCGA-CTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAAT
* ** * * *
7922068 CTTTCCCTC-TTCGATTTTTGGGTGTTAAGTTTGCCGTTGCGGCTTCGACCTAAT-CCTCTTC-A
65 CTATCCCTCTTTCGATTTTAAGGTG-TAAGTTCGCCGTTGCGACTTCAACCT-ATCCCTCTTCGA
* * *
7922130 GTTTTAAGGTATAAGATTCGT
128 GTTTTAAGGTGTAAGATCCAT
* * * * * * * *
7922151 CGTTGCGACTTCAATCTTTTCCTCTTCGCTTTTTTGGGTGTTAGATCCACTGTTGCGGCTTAAAT
1 CATTGCGACTTCAATCTTTCCCTCTTCG-ATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAAT
* * * ** * * * *
7922216 CTATGCCTC-TTCGATTTTAGGGTGTTAGGTTCATCATTGCGACTTTAACTTATCCCTCTTC-TG
65 CTATCCCTCTTTCGATTTTAAGGTG-TAAGTTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAG
* * * * *
7922279 CTTTAAGATGTTAGGTCCAC
129 TTTTAAGGTGTAAGATCCAT
* * * * ** *
7922299 CATTGCGACTTGAA-CTTATCCCTCTTCGTTTTTAAGGTGTAAGATTTATCGTTGTGACTTCAAT
1 CATTGCGACTTCAATCTT-TCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAAT
* * ** * * *
7922363 CTTTCCCTCTTT-GGTTTTTGGGTGTTAGGTCCGCCATTGCGACTTCAACCTATCCCTCTTC-AG
65 CTATCCCTCTTTCGATTTTAAGGTG-TAAGTTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAG
* *
7922426 TTTTAAGGTGTAAGATTCAC
129 TTTTAAGGTGTAAGATCCAT
* * ** * * * * * * * *
7922446 CGTTACGGTTTCAATCTTTCTCTATTCAATTTTAGGGTGTTAAATCCGCCATTGTAATTTCAATC
1 CATTGCGACTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAATC
* * * * * * *
7922511 TATCCCTC-TTCGATTTTAGGGTGTTAGGTCCGTCATTGTGACTACAACCT-TCCCTCTTC-AGT
66 TATCCCTCTTTCGATTTTAAGGTG-TAAGTTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAGT
** *
7922573 TTTAAATTGTAAGATCCGT
130 TTTAAGGTGTAAGATCCAT
* * * * * *
7922592 CATTACGACTTCAATCTTTCCCTTTTCGATTTTTGGGTGTTAGATCCGCTGTTGT-AGCTTCAAC
1 CATTGCGACTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGA-CTTCAAT
* * * * * * *
7922656 CTATCCCTCTTT-AATTTTAAGGTGTAAGATTCGCTGTTACGGCTTCAATCTTTACCTCTTCGA-
65 CTATCCCTCTTTCGATTTTAAGGTGTAAG-TTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAG
* *
7922719 TTTT-AGAGTGTTAGATCCGT
129 TTTTAAG-GTGTAAGATCCAT
** * * * ** * *
7922739 TGTTGCGACTTCAATCTATCCCTCTTC-AGTTTTAGGGTGTTAGGTTCGTCGTTGTGACATCAAC
1 CATTGCGACTTCAATCTTTCCCTCTTCGA-TTTTAGGGTGTTAGATCCACCGTTGTGACTTCAAT
* * ** *
7922803 CTATCTCTATTT-GATTTT-AGGATGTTAAGTTTACCGTTGCGGCTTCAACCTATCCCTCTTC
65 CTATCCCTCTTTCGATTTTAAGG-TG-TAAGTTCGCCGTTGCGACTTCAACCTATCCCTCTTC
7922864 AAACTCTATG
Statistics
Matches: 894, Mismatches: 235, Indels: 55
0.76 0.20 0.05
Matches are distributed among these distances:
145 4 0.00
146 115 0.13
147 512 0.57
148 146 0.16
149 117 0.13
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (148 bp):
CATTGCGACTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGATCCACCGTTGTGACTTCAATC
TATCCCTCTTTCGATTTTAAGGTGTAAGTTCGCCGTTGCGACTTCAACCTATCCCTCTTCGAGTT
TTAAGGTGTAAGATCCAT
Found at i:7921873 original size:51 final size:49
Alignment explanation
Indices: 7921562--7922862 Score: 440
Period size: 49 Copynumber: 26.5 Consensus size: 49
7921552 AGATTCGCCA
* * ***
7921562 TTGCGGCTTCAATCTGTTCCCTCTTTGGTTTCAAGGTGTTAGATCCACCG
1 TTGCGGCTTCAATCT-ATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * ** * *
7921612 TCGTGGCTTCAATCTATCCCTTTTTGGTTTTACGGTATTAGGT-CAGCCG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCA-CCG
* * * * ** * * *
7921661 TTCCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTAAGATCCATCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * * * *
7921710 TTGTGACTTCAATCTTTTCCTATTCGATTTTTGGGTGTTAGGTCCACCG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* ** * *
7921759 TTGCGGCTTCAACCTATCCCTCTTT-AGTTTTAAGGTGTAAGATTCACCG
1 TTGCGGCTTCAATCTATCCCTCTTTGA-TTTTTGGGTGTTAGATCCACCG
* * * *
7921808 TTGTGGCTTCAATCTTTTCCTCTTTGATTTTTTTGGGTGTTAGATCCAACG
1 TTGCGGCTTCAATCTATCCCTCTTTGA--TTTTTGGGTGTTAGATCCACCG
* * * * * **
7921859 TTACGGCTTAAATCTATCCCTCTTCT-ATTTTAGGATGTTAGGTCTGCCG
1 TTGCGGCTTCAATCTATCCCTCTT-TGATTTTTGGGTGTTAGATCCACCG
* * * * ** * **
7921908 TTGCGACTTCAACCTATCCCTATTCGATTTTAAGGTGTAAGATCCGTCG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * * * *
7921957 TTGTGACTTCAATCTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCCGCCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * ** * * *
7922006 TTGCAGCTTCAACCTATCCCT-TTTCAATTTTAAGGTGTAAGATCTATCG
1 TTGCGGCTTCAATCTATCCCTCTTT-GATTTTTGGGTGTTAGATCCACCG
* * * * * ***
7922055 TAGTGACTTCAATCTTTCCCTCTTCGATTTTTGGGTGTTA-AGTTTGCCG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGA-TCCACCG
* * * ** * * * **
7922104 TTGCGGCTTCGACCTAAT-CCTC-TTCAGTTTTAAGGTATAAGATTCGTCG
1 TTGCGGCTTCAATCT-ATCCCTCTTTGA-TTTTTGGGTGTTAGATCCACCG
* * * * * *
7922153 TTGCGACTTCAATCTTTTCCTCTTCGCTTTTTTGGGTGTTAGATCCACTG
1 TTGCGGCTTCAATCTATCCCTCTTTG-ATTTTTGGGTGTTAGATCCACCG
* * * * * * * *
7922203 TTGCGGCTTAAATCTATGCCTCTTCGATTTTAGGGTGTTAGGTTCATCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * ** * * *
7922252 TTGCGACTTTAA-CTTATCCCTCTTCTG-CTTTAAGATGTTAGGTCCACCA
1 TTGCGGCTTCAATC-TATCCCTCTT-TGATTTTTGGGTGTTAGATCCACCG
* * * * * ** *
7922301 TTGCGACTTGAA-CTTATCCCTCTTCG-TTTTTAAGGTGTAAGATTTATCG
1 TTGCGGCTTCAATC-TATCCCTCTTTGATTTTT-GGGTGTTAGATCCACCG
* * * * * * *
7922350 TTGTGACTTCAATCTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCCGCCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * ** * *
7922399 TTGCGACTTCAACCTATCCCTC-TTCAGTTTTAAGGTGTAAGATTCACCG
1 TTGCGGCTTCAATCTATCCCTCTTTGA-TTTTTGGGTGTTAGATCCACCG
* * * * * ** * * * *
7922448 TTACGGTTTCAATCTTTCTCTATTCAATTTTAGGGTGTTAAATCCGCCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
**** * * * ** *
7922497 TTGTAATTTCAATCTATCCCTCTTCGATTTTAGGGTGTTAGGTCCGTCA
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * * **** * ** *
7922546 TTGTGACTACAACCT-TCCCTC-TTCAGTTTTAAATTGTAAGATCCGTCA
1 TTGCGGCTTCAATCTATCCCTCTTTGA-TTTTTGGGTGTTAGATCCACCG
* * * * *
7922594 TTACGACTTCAATCTTTCCCT-TTTCGATTTTTGGGTGTTAGATCCGCTG
1 TTGCGGCTTCAATCTATCCCTCTTT-GATTTTTGGGTGTTAGATCCACCG
** * * ** * * * *
7922643 TTGTAGCTTCAACCTATCCCTCTTTAATTTTAAGGTGTAAGATTCGCTG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * * * ***
7922692 TTACGGCTTCAATCTTTACCTCTTCGATTTTAGAGTGTTAGATCCGTTG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
* * * * * **
7922741 TTGCGACTTCAATCTATCCCTC-TTCAGTTTTAGGGTGTTAGGTTCGTCG
1 TTGCGGCTTCAATCTATCCCTCTTTGA-TTTTTGGGTGTTAGATCCACCG
* * * * * * * * **
7922790 TTGTGACATCAACCTATCTCTATTTGATTTTAGGATGTTA-AGTTTACCG
1 TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGA-TCCACCG
*
7922839 TTGCGGCTTCAACCTATCCCTCTT
1 TTGCGGCTTCAATCTATCCCTCTT
7922863 CAAACTCTAT
Statistics
Matches: 916, Mismatches: 304, Indels: 63
0.71 0.24 0.05
Matches are distributed among these distances:
47 2 0.00
48 53 0.06
49 750 0.82
50 73 0.08
51 37 0.04
52 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (49 bp):
TTGCGGCTTCAATCTATCCCTCTTTGATTTTTGGGTGTTAGATCCACCG
Found at i:7921909 original size:100 final size:98
Alignment explanation
Indices: 7921671--7921952 Score: 284
Period size: 100 Copynumber: 2.9 Consensus size: 98
7921661 TTCCGACTTC
* * * *
7921671 AACCTATCCCTC-TTCGATTTTAAGGTGTAAGATCCATCATTGTGACTTCAATCTTTTCCTATTC
1 AACCTATCCCTCTTTAG-TTTTAAGGTGTAAGATTCACCGTTGTGACTTCAATCTTTTCCTATTC
* * * *
7921735 GATTTTTGGGTGTTAGGTCCACCGTTGCGGCTTC
65 GATTTTTGGGTGTTAGATCCAACGTTACGGCTTA
* * *
7921769 AACCTATCCCTCTTTAGTTTTAAGGTGTAAGATTCACCGTTGTGGCTTCAATCTTTTCCTCTTTG
1 AACCTATCCCTCTTTAGTTTTAAGGTGTAAGATTCACCGTTGTGACTTCAATCTTTTCCTATTCG
7921834 ATTTTTTTGGGTGTTAGATCCAACGTTACGGCTTA
66 A--TTTTTGGGTGTTAGATCCAACGTTACGGCTTA
* * * * * * * *
7921869 AATCTATCCCTCTTCTA-TTTT-AGGATGTTAG-GTCTGCCGTTGCGACTTCAACCTATCCCTAT
1 AACCTATCCCTCTT-TAGTTTTAAGG-TGTAAGATTC-ACCGTTGTGACTTCAATCTTTTCCTAT
** *
7921931 TCGATTTTAAGGTGTAAGATCC
63 TCGATTTTTGGGTGTTAGATCC
7921953 GTCGTTGTGA
Statistics
Matches: 153, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
98 70 0.46
99 8 0.05
100 73 0.48
101 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (98 bp):
AACCTATCCCTCTTTAGTTTTAAGGTGTAAGATTCACCGTTGTGACTTCAATCTTTTCCTATTCG
ATTTTTGGGTGTTAGATCCAACGTTACGGCTTA
Found at i:7922038 original size:98 final size:97
Alignment explanation
Indices: 7921869--7922575 Score: 589
Period size: 98 Copynumber: 7.2 Consensus size: 97
7921859 TTACGGCTTA
* ** * * * * *
7921869 AATCTATCCCTCTTCTATTTTAGGATGTTAGGTCTGCCGTTGCGACTTCAACCTATCCCTATTCG
1 AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGCG-CTTCAACCTATCCCTCTTCG
* *
7921934 ATTTTAAGGTGTAAGATCCGTCGTTGTGACTTC
65 ATTTTAAGGTGTAAGATTCATCGTTGTGACTTC
* * *
7921967 AATCTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCCGCCATTGCAGCTTCAACCTATCCCTTTTCA
1 AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGC-GCTTCAACCTATCCCTCTTCG
*
7922032 ATTTTAAGGTGTAAGA-TCTATCGTAGTGACTTC
65 ATTTTAAGGTGTAAGATTC-ATCGTTGTGACTTC
* * ** * *
7922065 AATCTTTCCCTCTTCGATTTTTGGGTGTTAAGTTTGCCGTTGCGGCTTCGACCTAAT-CCTCTTC
1 AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGC-GCTTCAACCT-ATCCCTCTTC
* * *
7922129 -AGTTTTAAGGTATAAGATTCGTCGTTGCGACTTC
64 GA-TTTTAAGGTGTAAGATTCATCGTTGTGACTTC
* * * * ** * * *
7922163 AATCTTTTCCTCTTCGCTTTTTTGGGTGTTAGATCCACTGTTGCGGCTTAAATCTATGCCTCTTC
1 AATCTTTCCCTCTTCG-GTTTTTGGGTGTTAGGTCCGCCATTGC-GCTTCAACCTATCCCTCTTC
* * * * * *
7922228 GATTTTAGGGTGTTAGGTTCATCATTGCGACTTT
64 GATTTTAAGGTGTAAGATTCATCGTTGTGACTTC
* * ** * * * *
7922262 AA-CTTATCCCTCTTCTGCTTTAAGATGTTAGGTCCACCATTGCGACTTGAACTTATCCCTCTTC
1 AATCTT-TCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGCG-CTTCAACCTATCCCTCTTC
* *
7922326 GTTTTTAAGGTGTAAGATTTATCGTTGTGACTTC
64 GATTTTAAGGTGTAAGATTCATCGTTGTGACTTC
*
7922360 AATCTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCCGCCATTGCGACTTCAACCTATCCCTCTTC-
1 AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGCG-CTTCAACCTATCCCTCTTCG
* ** **
7922424 AGTTTTAAGGTGTAAGATTCACCGTTACGGTTTC
65 A-TTTTAAGGTGTAAGATTCATCGTTGTGACTTC
* * ** * ** *** *
7922458 AATCTTTCTCTATTCAATTTTAGGGTGTTAAATCCGCCATTGTAATTTCAATCTATCCCTCTTCG
1 AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTG-CGCTTCAACCTATCCCTCTTCG
* * * * * * *
7922523 ATTTTAGGGTGTTAGGTCCGTCATTGTGACTAC
65 ATTTTAAGGTGTAAGATTCATCGTTGTGACTTC
* *
7922556 AA-CCTTCCCTCTTCAGTTTT
1 AATCTTTCCCTCTTCGGTTTT
7922576 AAATTGTAAG
Statistics
Matches: 485, Mismatches: 110, Indels: 29
0.78 0.18 0.05
Matches are distributed among these distances:
97 17 0.04
98 388 0.80
99 79 0.16
100 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (97 bp):
AATCTTTCCCTCTTCGGTTTTTGGGTGTTAGGTCCGCCATTGCGCTTCAACCTATCCCTCTTCGA
TTTTAAGGTGTAAGATTCATCGTTGTGACTTC
Found at i:7922039 original size:247 final size:245
Alignment explanation
Indices: 7921547--7922094 Score: 708
Period size: 247 Copynumber: 2.2 Consensus size: 245
7921537 TTTGTAAAAT
* * * * *** *
7921547 GTGTAAGATTCGCCATTGCGGCTTCAATCTGTTCCCTCTTTGGTTTCAAGGTGTTAGATCCACCG
1 GTGTAAGATTCACCGTTGTGGCTTCAATCT-TTCCCTCTTTGATTTTTGGGTGTTAGATCCAACG
** * * *
7921612 TCGTGGCTTCAATCTATCCCTTTTTGGTTTTACGGTATTAGGTCAGCCGTTCCGACTTCAACCTA
65 TCACGGCTTAAATCTATCCCTTTCTGATTTTACGGTATTAGGTCAGCCGTTCCGACTTCAACCTA
* *
7921677 TCCCTCTTCGATTTTAAGGTGTAAGATCCATCATTGTGACTTCAATCTTTTCCTATTCGATTTTT
130 TCCCTATTCGATTTTAAGGTGTAAGATCCATCATTGTGACTTCAATCTTTCCCTATTCGATTTTT
* * *
7921742 GGGTGTTAGGTCCACCGTTGCGGCTTCAACCTATCCCTCTTTAGTTTTAAG
195 GGGTGTTAGGTCCACCATTGCAGCTTCAACCTATCCCTCTTTAATTTTAAG
*
7921793 GTGTAAGATTCACCGTTGTGGCTTCAATCTTTTCCTCTTTGATTTTTTTGGGTGTTAGATCCAAC
1 GTGTAAGATTCACCGTTGTGGCTTCAATCTTTCCCTCTTTGA--TTTTTGGGTGTTAGATCCAAC
* * * *
7921858 GTTACGGCTTAAATCTATCCCTCTTCT-ATTTTA-GGATGTTAGGTCTGCCGTTGCGACTTCAAC
64 GTCACGGCTTAAATCTATCCCT-TTCTGATTTTACGG-TATTAGGTCAGCCGTTCCGACTTCAAC
* * * * *
7921921 CTATCCCTATTCGATTTTAAGGTGTAAGATCCGTCGTTGTGACTTCAATCTTTCCCTCTTTGGTT
127 CTATCCCTATTCGATTTTAAGGTGTAAGATCCATCATTGTGACTTCAATCTTTCCCTATTCGATT
*
7921986 TTTGGGTGTTAGGTCCGCCATTGCAGCTTCAACCTATCCCT-TTTCAATTTTAAG
192 TTTGGGTGTTAGGTCCACCATTGCAGCTTCAACCTATCCCTCTTT-AATTTTAAG
* * * *
7922040 GTGTAAGA-TCTATCGTAGTGACTTCAATCTTTCCCTCTTCGATTTTTGGGTGTTA
1 GTGTAAGATTC-ACCGTTGTGGCTTCAATCTTTCCCTCTTTGATTTTTGGGTGTTA
7922095 AGTTTGCCGT
Statistics
Matches: 262, Mismatches: 34, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
245 23 0.09
246 34 0.13
247 202 0.77
248 3 0.01
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (245 bp):
GTGTAAGATTCACCGTTGTGGCTTCAATCTTTCCCTCTTTGATTTTTGGGTGTTAGATCCAACGT
CACGGCTTAAATCTATCCCTTTCTGATTTTACGGTATTAGGTCAGCCGTTCCGACTTCAACCTAT
CCCTATTCGATTTTAAGGTGTAAGATCCATCATTGTGACTTCAATCTTTCCCTATTCGATTTTTG
GGTGTTAGGTCCACCATTGCAGCTTCAACCTATCCCTCTTTAATTTTAAG
Found at i:7922627 original size:244 final size:244
Alignment explanation
Indices: 7922354--7922804 Score: 624
Period size: 244 Copynumber: 1.8 Consensus size: 244
7922344 TTATCGTTGT
* *
7922354 GACTTCAATCTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCCGCCATTGCGA-CTTCAACCTATCC
1 GACTTCAATCTTTCCCTCTTTGATTTTTGGGTGTTAGATCCGCCATTG-GAGCTTCAACCTATCC
* * *
7922418 CTCTTCAGTTTTAAGGTGTAAGATTCACCGTTACGGTTTCAATCTTT-CTCTATTCAATTTTAGG
65 CTCTTCAATTTTAAGGTGTAAGATTCACCGTTACGGCTTCAATCTTTAC-CTATTCAATTTTAGA
* *
7922482 GTGTTAAATCCGCCATTGTAATTTCAATCTATCCCTCTTC-GATTTTAGGGTGTTAGGTCCGTCA
129 GTGTTAAATCCGCCATTGCAACTTCAATCTATCCCTCTTCAG-TTTTAGGGTGTTAGGTCCGTCA
7922546 TTGTGAC-TACAACCTTCCCTCTTCAGTTTTAAATTGTAAGATCCGTCATTAC
193 TTGTGACAT-CAACCTTCCCTCTTCAGTTTTAAATTGTAAGATCCGTCATTAC
** *
7922598 GACTTCAATCTTTCCCT-TTTCGATTTTTGGGTGTTAGATCCGCTGTTGTAGCTTCAACCTATCC
1 GACTTCAATCTTTCCCTCTTT-GATTTTTGGGTGTTAGATCCGCCATTGGAGCTTCAACCTATCC
* * * * *
7922662 CTCTTTAATTTTAAGGTGTAAGATTCGCTGTTACGGCTTCAATCTTTACCTCTTCGATTTTAGAG
65 CTCTTCAATTTTAAGGTGTAAGATTCACCGTTACGGCTTCAATCTTTACCTATTCAATTTTAGAG
* *** * * *
7922727 TGTTAGATCCGTTGTTGCGACTTCAATCTATCCCTCTTCAGTTTTAGGGTGTTAGGTTCGTCGTT
130 TGTTAAATCCGCCATTGCAACTTCAATCTATCCCTCTTCAGTTTTAGGGTGTTAGGTCCGTCATT
7922792 GTGACATCAACCT
195 GTGACATCAACCT
7922805 ATCTCTATTT
Statistics
Matches: 180, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
243 4 0.02
244 173 0.96
245 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (244 bp):
GACTTCAATCTTTCCCTCTTTGATTTTTGGGTGTTAGATCCGCCATTGGAGCTTCAACCTATCCC
TCTTCAATTTTAAGGTGTAAGATTCACCGTTACGGCTTCAATCTTTACCTATTCAATTTTAGAGT
GTTAAATCCGCCATTGCAACTTCAATCTATCCCTCTTCAGTTTTAGGGTGTTAGGTCCGTCATTG
TGACATCAACCTTCCCTCTTCAGTTTTAAATTGTAAGATCCGTCATTAC
Found at i:7932320 original size:18 final size:18
Alignment explanation
Indices: 7932297--7932346 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
7932287 ACAATTCATA
7932297 TCACTTTCAATTTTAATT
1 TCACTTTCAATTTTAATT
* * * *
7932315 TCACTTCCACTTTCACTT
1 TCACTTTCAATTTTAATT
7932333 TCACTTTCAATTTT
1 TCACTTTCAATTTT
7932347 GATCACAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.00, T:0.52
Consensus pattern (18 bp):
TCACTTTCAATTTTAATT
Found at i:7932325 original size:6 final size:6
Alignment explanation
Indices: 7932297--7932341 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
7932287 ACAATTCATA
* * * *
7932297 TCACTT TCAATT TTAATT TCACTT CCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
7932342 ATTTTGATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (6 bp):
TCACTT
Found at i:7932497 original size:15 final size:15
Alignment explanation
Indices: 7932465--7932504 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7932455 TATAATTAAC
7932465 CACATA-ATATTTCA
1 CACATATATATTTCA
* *
7932479 CACATATATTTTTCT
1 CACATATATATTTCA
7932494 CACATATATAT
1 CACATATATAT
7932505 CATTATATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (15 bp):
CACATATATATTTCA
Found at i:7934590 original size:30 final size:30
Alignment explanation
Indices: 7934553--7934624 Score: 76
Period size: 33 Copynumber: 2.3 Consensus size: 30
7934543 ATTTAATGAT
7934553 AAATAAATAAA-TAAACAAACAA-AATAATA
1 AAATAAATAAATTAAACAAA-AATAATAATA
*
7934582 ATAATAAATGCAAATTAAATAAAAATAATAATA
1 A-AATAAAT--AAATTAAACAAAAATAATAATA
*
7934615 AAAGAAATAA
1 AAATAAATAA
7934625 CAATAAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
29 1 0.03
30 9 0.25
32 11 0.31
33 15 0.42
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (30 bp):
AAATAAATAAATTAAACAAAAATAATAATA
Found at i:7934629 original size:27 final size:28
Alignment explanation
Indices: 7934570--7934632 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
7934560 TAAATAAACA
* *
7934570 AACAA-AATAATAATAATAAATGCAAAT
1 AACAATAAAAATAATAATAAAAGCAAAT
*
7934597 TA-AATAAAAATAATAATAAAAG-AAAT
1 AACAATAAAAATAATAATAAAAGCAAAT
7934623 AACAATAAAA
1 AACAATAAAA
7934633 TGATCTGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (28 bp):
AACAATAAAAATAATAATAAAAGCAAAT
Found at i:7935201 original size:58 final size:58
Alignment explanation
Indices: 7935139--7935258 Score: 204
Period size: 58 Copynumber: 2.1 Consensus size: 58
7935129 ACCCATCAAC
*
7935139 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTCATTATTAAAAAACACTCAT
1 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTCATTACTAAAAAACACTCAT
* * *
7935197 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTTATTCCTAAATAACACTCAT
1 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTCATTACTAAAAAACACTCAT
7935255 AAAC
1 AAAC
7935259 AACTCCTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (58 bp):
AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTCATTACTAAAAAACACTCAT
Found at i:7944529 original size:8 final size:8
Alignment explanation
Indices: 7944516--7944582 Score: 63
Period size: 8 Copynumber: 8.9 Consensus size: 8
7944506 ATTTCACCAA
7944516 AAAAAGAG
1 AAAAAGAG
7944524 AAAAAGAG
1 AAAAAGAG
*
7944532 AAAAAAAG
1 AAAAAGAG
7944540 AAAAA-A-
1 AAAAAGAG
*
7944546 AAGAAAAAG
1 AA-AAAGAG
7944555 AAAAA-AG
1 AAAAAGAG
*
7944562 AAATAG-G
1 AAAAAGAG
7944569 AAAAA-AG
1 AAAAAGAG
7944576 AAAAAGA
1 AAAAAGA
7944583 AGAGGTCAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
6 2 0.04
7 21 0.42
8 25 0.50
9 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (8 bp):
AAAAAGAG
Found at i:7944537 original size:10 final size:10
Alignment explanation
Indices: 7944514--7944564 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
7944504 AAATTTCACC
7944514 AAAAAAAGAG
1 AAAAAAAGAG
7944524 --AAAAAGAG
1 AAAAAAAGAG
7944532 AAAAAAAGA-
1 AAAAAAAGAG
*
7944541 AAAAAAAGAA
1 AAAAAAAGAG
*
7944551 AAAGAAAAAAG
1 AAA-AAAAGAG
7944562 AAA
1 AAA
7944565 TAGGAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
8 8 0.23
9 9 0.26
10 10 0.29
11 8 0.23
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:7944552 original size:6 final size:6
Alignment explanation
Indices: 7944517--7944583 Score: 55
Period size: 6 Copynumber: 10.3 Consensus size: 6
7944507 TTTCACCAAA
* *
7944517 AAAAGAG AAAAAG AGAAAA- AAAGAAA AAAAAG AAAAAG AAAAAAG AAATAGG
1 AAAA-AG AAAAAG A-AAAAG AAA-AAG AAAAAG AAAAAG -AAAAAG AAA-AAG
7944569 AAAAAAG AAAAAG AA
1 -AAAAAG AAAAAG AA
7944584 GAGGTCAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
5 2 0.04
6 25 0.49
7 21 0.41
8 3 0.06
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:7944572 original size:27 final size:25
Alignment explanation
Indices: 7944514--7944583 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 25
7944504 AAATTTCACC
*
7944514 AAAAAAAGAGAAAAAGAGAAAAAAAG
1 AAAAAAA-AGAAAAAGAAAAAAAAAG
*
7944540 AAAAAAAAGAAAAAGAAAAAAGAAAT
1 AAAAAAAAGAAAAAGAAAAAA-AAAG
*
7944566 AGGAAAAAAGAAAAAGAA
1 A-AAAAAAAGAAAAAGAA
7944584 GAGGTCAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 13 0.33
26 11 0.28
27 15 0.38
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.01
Consensus pattern (25 bp):
AAAAAAAAGAAAAAGAAAAAAAAAG
Found at i:7945032 original size:112 final size:112
Alignment explanation
Indices: 7944894--7945113 Score: 300
Period size: 112 Copynumber: 2.0 Consensus size: 112
7944884 TCTTTGTCAA
* * *
7944894 TTTTAATCTTTTCGTTCATGTGAGCTTTGCATCCAATAAAATTCAATTTTATCCACCTTACAACT
1 TTTTAATCTTTTCATTCATCTGAGCTTTGCATCCAATAAAATTCAATTTTATCCACCTTACAACC
* *
7944959 CTGCTCAAGCATGTTTGCATTGAAAT-AGCGGTTAGTGGACTAATGAT
66 CTACTAAAGCATGTTTGCATTGAAATGA-CGGTTAGTGGACTAATGAT
* *
7945006 TTTTAATCTTTTCATTCATACT-AGCTTTGCCTCCAATAAAATTCAATTTTATCCACTTTACAAC
1 TTTTAATCTTTTCATTCAT-CTGAGCTTTGCATCCAATAAAATTCAATTTTATCCACCTTACAAC
* * * * *
7945070 CCTATTAAAGCATTTTTTCATTGAAATGACTGTTAGTGGTCTAA
65 CCTACTAAAGCATGTTTGCATTGAAATGACGGTTAGTGGACTAA
7945114 CGGTATAAGG
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 92 0.98
113 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (112 bp):
TTTTAATCTTTTCATTCATCTGAGCTTTGCATCCAATAAAATTCAATTTTATCCACCTTACAACC
CTACTAAAGCATGTTTGCATTGAAATGACGGTTAGTGGACTAATGAT
Found at i:7945904 original size:147 final size:146
Alignment explanation
Indices: 7945531--7946226 Score: 573
Period size: 147 Copynumber: 4.7 Consensus size: 146
7945521 ACATTGAATC
* ** * * * * *
7945531 TATACCTTAGAGATGT-GAAGGGAGAA-ATTGAAGTTGCAATGACGAATCTCATGCCCTAGAGAT
1 TATACCTTAGAGATGTAG-AGGGA-AAGGTTGAAGCCGCAACGACGAACCTTATACCTTAGAGAT
* * ** * * * * *
7945594 GTGAAGGGAAAGATTTAAG-CTATAACGTCGAATCTCATGCCCTAGAGATGTAAAGGGAAATATT
64 GTGATGGGAAAGATTGAAGTC-GCAACGACGAATCTTATACCCTAGAGATGT-GAGGGAAAGATT
* *
7945658 GAAG-CTGCAAAGGCGAATCT
127 GAAGTC-GCAATGGCGAACCT
* * * * * * *
7945678 TATACCTTGGGGGATGTGGAGGGAAAGGTTTATA-CTGCAATGACGAACCTTGTACCTTAGAGAT
1 TATACCTT-AGAGATGTAGAGGGAAAGGTTGA-AGCCGCAACGACGAACCTTATACCTTAGAGAT
* * * * * * *
7945742 ATAATGGGAAAGATTGAAGTCGCAACGACGAATTTTGTACCCTAAAGATATGGAGGGAAAGGTTG
64 GTGATGGGAAAGATTGAAGTCGCAACGACGAATCTTATACCCTAGAGATGT-GAGGGAAAGATTG
* * *
7945807 AAGTCGAAACGACGAACCT
128 AAGTCGCAATGGCGAACCT
* * * *
7945826 TATACCCTAGAGATATAGAGGGAAAGGTTGAA-CCTGTAACGACAAACCTTATACCTTAGAGATG
1 TATACCTTAGAGATGTAGAGGGAAAGGTTGAAGCC-GCAACGACGAACCTTATACCTTAGAGATG
* * * * * *
7945890 TGATGAGAATGATTGAAGTCGTAATGATGAATCTTATACCCTAGTGATGTAGAGGGAAAGATTGA
65 TGATGGGAAAGATTGAAGTCGCAACGACGAATCTTATACCCTAGAGATGT-GAGGGAAAGATTGA
*
7945955 AGCCGCAATGGCGAACCT
129 AGTCGCAATGGCGAACCT
* * * * * * * *
7945973 TATACGTTAGAGATGT-GATGAGAAAGATTGAAGCCGCAACGGCTAATCTTATACCCTATAGATG
1 TATACCTTAGAGATGTAGA-GGGAAAGGTTGAAGCCGCAACGACGAACCTTATACCTTAGAGATG
* * * * * * * **
7946037 TAGA-GGGAAAGGTTAAAGCCGCAACGACAAACCTTATACCTTGGAGATGTGATTAGAAAGATTG
65 T-GATGGGAAAGATTGAAGTCGCAACGACGAATCTTATACCCTAGAGATGTGA-GGGAAAGATTG
* *
7946101 AAGTCGCAATGGTGAATCT
128 AAGTCGCAATGGCGAACCT
7946120 TATACCTTAGAGATGTAGAGGGAAAGGTTGAAGCCGCAACGACGAACCTTATACCTTAGAGATGT
1 TATACCTTAGAGATGTAGAGGGAAAGGTTGAAGCCGCAACGACGAACCTTATACCTTAGAGATGT
** * *
7946185 GAAAGGAAAGATTGAAG-CTGCAACAACAAATCTTATACCCTA
66 GATGGGAAAGATTGAAGTC-GCAACGACGAATCTTATACCCTA
7946227 ACGATGAGGA
Statistics
Matches: 431, Mismatches: 104, Indels: 28
0.77 0.18 0.05
Matches are distributed among these distances:
146 9 0.02
147 308 0.71
148 110 0.26
149 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (146 bp):
TATACCTTAGAGATGTAGAGGGAAAGGTTGAAGCCGCAACGACGAACCTTATACCTTAGAGATGT
GATGGGAAAGATTGAAGTCGCAACGACGAATCTTATACCCTAGAGATGTGAGGGAAAGATTGAAG
TCGCAATGGCGAACCT
Found at i:7946208 original size:49 final size:49
Alignment explanation
Indices: 7945526--7946223 Score: 493
Period size: 49 Copynumber: 14.2 Consensus size: 49
7945516 AAAAAACATT
* *
7945526 GAATC-TATACCTTAGAGATGTGAAGGGAGAA-ATTGAAGTTGCAATGAC
1 GAATCTTATACCTTAGAGATGTGAAGGGA-AAGATTGAAGCTGCAACGAC
* * * * ** *
7945574 GAATCTCATGCCCTAGAGATGTGAAGGGAAAGATTTAAGCTATAACGTC
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
* * * * * * *
7945623 GAATCTCATGCCCTAGAGATGTAAAGGGAAATATTGAAGCTGCAAAGGC
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
* * * * * *
7945672 GAATCTTATACCTTGGGGGATGTGGAGGGAAAGGTTTATA-CTGCAATGAC
1 GAATCTTATACCTT-AGAGATGTGAAGGGAAAGATTGA-AGCTGCAACGAC
* * *
7945722 GAACCTTGTACCTTAGAGATAT-AATGGGAAAGATTGAAG-TCGCAACGAC
1 GAATCTTATACCTTAGAGATGTGAA-GGGAAAGATTGAAGCT-GCAACGAC
* * * * * * * *
7945771 GAATTTTGTACCCTAAAGATATGGAGGGAAAGGTTGAAG-TCGAAACGAC
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* * * * * *
7945820 GAACCTTATACCCTAGAGATAT-AGAGGGAAAGGTTGAACCTGTAACGAC
1 GAATCTTATACCTTAGAGATGTGA-AGGGAAAGATTGAAGCTGCAACGAC
* * * * * * * *
7945869 AAACCTTATACCTTAGAGATGTGATGAGAATGATTGAAG-TCGTAATGAT
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* * * * *
7945918 GAATCTTATACCCTAGTGATGT-AGAGGGAAAGATTGAAGCCGCAATGGC
1 GAATCTTATACCTTAGAGATGTGA-AGGGAAAGATTGAAGCTGCAACGAC
* * * * * *
7945967 GAACCTTATACGTTAGAGATGTGATGAGAAAGATTGAAGCCGCAACGGC
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
* * * * * *
7946016 TAATCTTATACCCTATAGATGT-AGAGGGAAAGGTTAAAGCCGCAACGAC
1 GAATCTTATACCTTAGAGATGTGA-AGGGAAAGATTGAAGCTGCAACGAC
* * * *** * **
7946065 AAACCTTATACCTTGGAGATGTGATTAGAAAGATTGAAG-TCGCAATGGT
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* *
7946114 GAATCTTATACCTTAGAGATGT-AGAGGGAAAGGTTGAAGCCGCAACGAC
1 GAATCTTATACCTTAGAGATGTGA-AGGGAAAGATTGAAGCTGCAACGAC
* * *
7946163 GAACCTTATACCTTAGAGATGTGAAAGGAAAGATTGAAGCTGCAACAAC
1 GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
*
7946212 AAATCTTATACC
1 GAATCTTATACC
7946224 CTAACGATGA
Statistics
Matches: 508, Mismatches: 121, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
48 14 0.03
49 451 0.89
50 42 0.08
51 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (49 bp):
GAATCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
Found at i:7946217 original size:98 final size:98
Alignment explanation
Indices: 7945526--7946226 Score: 574
Period size: 98 Copynumber: 7.2 Consensus size: 98
7945516 AAAAAACATT
* ** * * * * *
7945526 GAATC-TATACCTTAGAGATGT-GAAGGGAGAA-ATTGAAGTTGCAATGACGAATCTCATGCCCT
1 GAATCTTATACCCTAGAGATGTAG-AGGGA-AAGATTGAAGCCGCAACGACGAACCTTATACCTT
* ** *
7945588 AGAGATGTGAAGGGAAAGATTTAAGCTATAACGTC
64 AGAGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
* * * * * * * * *
7945623 GAATCTCATGCCCTAGAGATGTAAAGGGAAATATTGAAGCTGCAAAGGCGAATCTTATACCTTGG
1 GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTT-A
* * * * *
7945688 GGGATGTGGAGGGAAAGGTTTATA-CTGCAATGAC
65 GAGATGTGAAGGGAAAGATTGA-AGCTGCAACGAC
* * * * * ** * *
7945722 GAACCTTGTACCTTAGAGATATA-ATGGGAAAGATTGAAGTCGCAACGACGAATTTTGTACCCTA
1 GAATCTTATACCCTAGAGATGTAGA-GGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTTA
* * * * *
7945786 AAGATATGGAGGGAAAGGTTGAAG-TCGAAACGAC
65 GAGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* * * * *
7945820 GAACCTTATACCCTAGAGATATAGAGGGAAAGGTTGAA-CCTGTAACGACAAACCTTATACCTTA
1 GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCC-GCAACGACGAACCTTATACCTTA
* * * * * *
7945884 GAGATGTGATGAGAATGATTGAAG-TCGTAATGAT
65 GAGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* * * *
7945918 GAATCTTATACCCTAGTGATGTAGAGGGAAAGATTGAAGCCGCAATGGCGAACCTTATACGTTAG
1 GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTTAG
* * * *
7945983 AGATGTGATGAGAAAGATTGAAGCCGCAACGGC
66 AGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
* * * * * *
7946016 TAATCTTATACCCTATAGATGTAGAGGGAAAGGTTAAAGCCGCAACGACAAACCTTATACCTTGG
1 GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTTAG
*** * **
7946081 AGATGTGATTAGAAAGATTGAAG-TCGCAATGGT
66 AGATGTGAAGGGAAAGATTGAAGCT-GCAACGAC
* *
7946114 GAATCTTATACCTTAGAGATGTAGAGGGAAAGGTTGAAGCCGCAACGACGAACCTTATACCTTAG
1 GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTTAG
* *
7946179 AGATGTGAAAGGAAAGATTGAAGCTGCAACAAC
66 AGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
*
7946212 AAATCTTATACCCTA
1 GAATCTTATACCCTA
7946227 ACGATGAGGA
Statistics
Matches: 487, Mismatches: 103, Indels: 27
0.79 0.17 0.04
Matches are distributed among these distances:
97 10 0.02
98 400 0.82
99 76 0.16
100 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (98 bp):
GAATCTTATACCCTAGAGATGTAGAGGGAAAGATTGAAGCCGCAACGACGAACCTTATACCTTAG
AGATGTGAAGGGAAAGATTGAAGCTGCAACGAC
Found at i:7956667 original size:48 final size:48
Alignment explanation
Indices: 7956600--7956701 Score: 152
Period size: 48 Copynumber: 2.1 Consensus size: 48
7956590 TTCTTTCTTT
**
7956600 TAAAATTCTAATCATTTTGTATATCAGTTGCCCCTTTTAAAGCCAAAA
1 TAAAATTCTAATCATTTTGTATATCAACTGCCCCTTTTAAAGCCAAAA
* *
7956648 TAAAAGTT-TAATCTTTTTGTATATCAACTGTCCCTTTTAAAGCCAAAA
1 TAAAA-TTCTAATCATTTTGTATATCAACTGCCCCTTTTAAAGCCAAAA
7956696 TAAAAT
1 TAAAAT
7956702 GTTGTCTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
47 1 0.02
48 46 0.94
49 2 0.04
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (48 bp):
TAAAATTCTAATCATTTTGTATATCAACTGCCCCTTTTAAAGCCAAAA
Found at i:7960508 original size:24 final size:25
Alignment explanation
Indices: 7960479--7960527 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7960469 ACCCACAGGA
* *
7960479 ATTATAAAAATGA-ATTTAATAATT
1 ATTATAAAAAAGATAGTTAATAATT
7960503 ATTATAAAAAAGATAGTTAATAATT
1 ATTATAAAAAAGATAGTTAATAATT
7960528 CTATCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
ATTATAAAAAAGATAGTTAATAATT
Found at i:7983225 original size:18 final size:18
Alignment explanation
Indices: 7983202--7983244 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7983192 CAAAAGGATT
*
7983202 AGCATATTGGCTCGTGAG
1 AGCATACTGGCTCGTGAG
* *
7983220 AGCATACTGGCTTGTTAG
1 AGCATACTGGCTCGTGAG
7983238 AGCATAC
1 AGCATAC
7983245 CAACTCGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (18 bp):
AGCATACTGGCTCGTGAG
Found at i:7986118 original size:24 final size:24
Alignment explanation
Indices: 7986091--7986137 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7986081 TTTCTTATAC
7986091 TCATGCTGAC-AACTGTAAACGTAT
1 TCATGCTGACGAAC-GTAAACGTAT
*
7986115 TCATGCTGACGAGCGTAAACGTA
1 TCATGCTGACGAACGTAAACGTA
7986138 AGGTACTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
TCATGCTGACGAACGTAAACGTAT
Found at i:7988644 original size:25 final size:25
Alignment explanation
Indices: 7988585--7988644 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
7988575 CTTTAGTGCA
* **
7988585 CTCTCAGATTGTTAGCACATTGGTG
1 CTCTCAGATTATTAGCACATCAGTG
** *
7988610 CTCTTTGATTATTAGCACGTCAGTG
1 CTCTCAGATTATTAGCACATCAGTG
7988635 CTCTCAGATT
1 CTCTCAGATT
7988645 TGCATGTTTG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (25 bp):
CTCTCAGATTATTAGCACATCAGTG
Found at i:7991012 original size:18 final size:18
Alignment explanation
Indices: 7990989--7991027 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7990979 ATTAAATATT
* *
7990989 TTAAATTTATTGGAATGA
1 TTAAATTGATGGGAATGA
*
7991007 TTAAATTGATGGGAATTA
1 TTAAATTGATGGGAATGA
7991025 TTA
1 TTA
7991028 TCTAGATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (18 bp):
TTAAATTGATGGGAATGA
Found at i:7991916 original size:43 final size:43
Alignment explanation
Indices: 7991855--7991942 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7991845 CTTCGAAATC
7991855 CAGAAAACGGGTCCAGGAGTTGGTTACTGTGAGGAAGGATTAG
1 CAGAAAACGGGTCCAGGAGTTGGTTACTGTGAGGAAGGATTAG
7991898 CAGAAAACGGGTCCAGGAGTTGGTTACTGTGAGGAAGGATTAG
1 CAGAAAACGGGTCCAGGAGTTGGTTACTGTGAGGAAGGATTAG
7991941 CA
1 CA
7991943 CCCACACACG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.31, C:0.12, G:0.36, T:0.20
Consensus pattern (43 bp):
CAGAAAACGGGTCCAGGAGTTGGTTACTGTGAGGAAGGATTAG
Found at i:7992686 original size:30 final size:28
Alignment explanation
Indices: 7992646--7992808 Score: 102
Period size: 30 Copynumber: 5.5 Consensus size: 28
7992636 CAAAATGAAA
*
7992646 TTTTGGAAAGTTTGAGGGCTAAATTCTAAT
1 TTTTGAAAAGTTTGAGGG-TAAA-TCTAAT
7992676 TTTTGAAAAGTTT-ACGGGTCAAATCTAAAT
1 TTTTGAAAAGTTTGA-GGGT-AAATCT-AAT
* *
7992706 TTTT-AGGAAGTTTGAGGGTCAAAATGTGAA-
1 TTTTGA-AAAGTTTGAGGGT--AAATCT-AAT
*
7992736 TTTTGGAAAGTTTGAGGGTCAAATCTAAAT
1 TTTTGAAAAGTTTGAGGGT-AAATCT-AAT
*
7992766 TTTT-AGAAAGTTT-AGGTGTTAAAATATAAT
1 TTTTGA-AAAGTTTGAGG-G-T-AAATCTAAT
*
7992796 TTTTAAAAAGTTT
1 TTTTGAAAAGTTT
7992809 AAGGACCTCT
Statistics
Matches: 108, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
29 16 0.15
30 77 0.71
31 15 0.14
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (28 bp):
TTTTGAAAAGTTTGAGGGTAAATCTAAT
Found at i:7992722 original size:60 final size:58
Alignment explanation
Indices: 7992646--7992809 Score: 179
Period size: 60 Copynumber: 2.7 Consensus size: 58
7992636 CAAAATGAAA
*
7992646 TTTTGGAAAGTTTGAGGGCTAAATTCTAATTTTTGAAAAGTTTACGGGTCAAATCTAAAT
1 TTTTAGAAAGTTTGAGGGCTAAATT-TAATTTTTGAAAAGTTTA-GGGTCAAATCTAAAT
* * * *
7992706 TTTTAGGAAGTTTGAGGGTCAAAATGTGAA-TTTTGGAAAGTTTGAGGGTCAAATCTAAAT
1 TTTTAGAAAGTTTGAGGG-CTAAAT-TTAATTTTTGAAAAGTTT-AGGGTCAAATCTAAAT
* * *
7992766 TTTTAGAAAGTTT-AGGTGTTAAAATATAATTTTTAAAAAGTTTA
1 TTTTAGAAAGTTTGAGG-GCT-AAATTTAATTTTTGAAAAGTTTA
7992810 AGGACCTCTT
Statistics
Matches: 86, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
59 6 0.07
60 71 0.83
61 8 0.09
62 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (58 bp):
TTTTAGAAAGTTTGAGGGCTAAATTTAATTTTTGAAAAGTTTAGGGTCAAATCTAAAT
Found at i:7992797 original size:90 final size:89
Alignment explanation
Indices: 7992632--7992800 Score: 222
Period size: 90 Copynumber: 1.9 Consensus size: 89
7992622 AGGAAAAACG
*
7992632 GGGTCAAAATGAAATTTTGGAAAGTTTGAGGGCTAAATTCTAATTTTTGAAAAGTTTACGGGTCA
1 GGGTCAAAATGAAATTTTGGAAAGTTTGAGGGCTAAATTCTAATTTTTGAAAAGTTTACGGGTAA
*
7992697 AATCTAAATTTTTAGGAAGTTTGA
66 AATATAAATTTTTAGGAAGTTTGA
*
7992721 GGGTCAAAATGTGAATTTTGGAAAGTTTGAGGG-TCAAA-TCTAAATTTTT-AGAAAGTTTA-GG
1 GGGTCAAAATG-AAATTTTGGAAAGTTTGAGGGCT-AAATTCT-AATTTTTGA-AAAGTTTACGG
7992782 TGTTAAAATAT-AATTTTTA
62 -G-TAAAATATAAATTTTTA
7992801 AAAAGTTTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 11
0.84 0.04 0.13
Matches are distributed among these distances:
89 18 0.25
90 47 0.66
91 6 0.08
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (89 bp):
GGGTCAAAATGAAATTTTGGAAAGTTTGAGGGCTAAATTCTAATTTTTGAAAAGTTTACGGGTAA
AATATAAATTTTTAGGAAGTTTGA
Found at i:7993582 original size:2 final size:2
Alignment explanation
Indices: 7993577--7993646 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
7993567 CTATATACAA
7993577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7993619 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7993647 TTACTATACC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7994678 original size:48 final size:47
Alignment explanation
Indices: 7994623--7994779 Score: 154
Period size: 48 Copynumber: 3.5 Consensus size: 47
7994613 TTTGGTCTAT
*
7994623 TTCTTTGTATCTTATCAGGAAGATGACGGCTTTATTAATTTAATCCAC
1 TTCTTTGTATCTCATCAGGAAGATGACGGCTTTATT-ATTTAATCCAC
* *
7994671 TTCTTTGTATCTCATTAGG-A-A-GACGG-------ATTTAGTCCAC
1 TTCTTTGTATCTCATCAGGAAGATGACGGCTTTATTATTTAATCCAC
** * *
7994708 TTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCAC
1 TTCTTTGTATCTCATCAGGAAGATGACGGCTTTATT-ATTTAATCCAC
*
7994756 TTCTCTGTATCTCATCAGGAAGAT
1 TTCTTTGTATCTCATCAGGAAGAT
7994780 TGGGTTTGGA
Statistics
Matches: 88, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
37 28 0.32
38 1 0.01
39 1 0.01
40 3 0.03
45 5 0.06
46 1 0.01
47 1 0.01
48 48 0.55
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (47 bp):
TTCTTTGTATCTCATCAGGAAGATGACGGCTTTATTATTTAATCCAC
Found at i:7994710 original size:37 final size:37
Alignment explanation
Indices: 7994660--7994730 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7994650 GGCTTTATTA
*
7994660 ATTTAATCCACTTCTTTGTATCTCATTAGGAAGACGG
1 ATTTAATCCACTTCTTTGTATCTCATCAGGAAGACGG
*
7994697 ATTTAGTCCACTTCTTTGTATCTCATCAGGAAGA
1 ATTTAATCCACTTCTTTGTATCTCATCAGGAAGA
7994731 TGACCTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (37 bp):
ATTTAATCCACTTCTTTGTATCTCATCAGGAAGACGG
Found at i:7994756 original size:85 final size:85
Alignment explanation
Indices: 7994623--7994778 Score: 240
Period size: 85 Copynumber: 1.8 Consensus size: 85
7994613 TTTGGTCTAT
* * * * *
7994623 TTCTTTGTATCTTATCAGGAAGATGACGGCTTTATTAATTTAATCCACTTCTTTGTATCTCATTA
1 TTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTAATTTAACCCACTTCTCTGTATCTCATCA
7994688 GGAAGACGGATTTAGTCCAC
66 GGAAGACGGATTTAGTCCAC
* **
7994708 TTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTCTGTATCTCATCA
1 TTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTAATTTAACCCACTTCTCTGTATCTCATCA
7994773 GGAAGA
66 GGAAGA
7994779 TTGGGTTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (85 bp):
TTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTAATTTAACCCACTTCTCTGTATCTCATCA
GGAAGACGGATTTAGTCCAC
Found at i:7994876 original size:208 final size:208
Alignment explanation
Indices: 7994490--7995243 Score: 951
Period size: 208 Copynumber: 3.6 Consensus size: 208
7994480 GCTTCATCTC
* * * * * * *
7994490 TTGGTCTACTTCTCTATATCTCATTAGGAAGATGATCGCTTTATTGCTTCGACCGACTTCTATGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGT
* * *
7994555 ATCTCATC-AGAAAGATGGGGGTTTGG-AGTTTCACTCATATTGAGCTTTACTTCATTGATTTGG
66 ATCTCATCAAG-AAGAT-TGGGTTTGGAAGTTTCACTCAAATTGAGCTTCACTTCATTGATTTGG
* * * * * *
7994618 TCTATTTCTTTGTATCTTATCAGGAAGATGACGGCTTTATTAATTTAATCCACTTCTTTGTATCT
129 TCTACTTCTCTATATCTCATCAGGAAGATGAC-GCTTCATTATTTTAATCCACTTCTTTGTATCT
7994683 CATTAGGAAGACGGAT
193 CATTAGGAAGACGGAT
* * * *
7994699 TTAGTCCACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGT
* *
7994764 ATCTCATCAGGAAGATTGGGTTTGGAAGTTTCACT-AAATTGAGCTTCACTTCATTGAATTGGTC
66 ATCTCATCAAGAAGATTGGGTTTGGAAGTTTCACTCAAATTGAGCTTCACTTCATTGATTTGGTC
*
7994828 TACTTCTCTATATCTCATCAGTAAGATGATCGCTTCATTATTTTAATCCACTTCTTTGTATCTCA
131 TACTTCTCTATATCTCATCAGGAAGATGA-CGCTTCATTATTTTAATCCACTTCTTTGTATCTCA
* * *
7994893 TCAAGAAGACGAAT
195 TTAGGAAGACGGAT
* * * * * *
7994907 TTGGTTCACTTCTCTGCATCTCGTCAGGAAAAGGACCACTTTATTGCTTTGACCCACTTCTCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGT
* * ***
7994972 ATCTCATCAAGAAGA-TGGGCTTT-GAAGTCTCATTTGTATTGAGCTTCACTTCATTGATTTGGT
66 ATCTCATCAAGAAGATTGGG-TTTGGAAGTTTCACTCAAATTGAGCTTCACTTCATTGATTTGGT
* * *
7995035 CTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCCACTTCTCTGTATCTA
130 CTACTTCTCTATATCTCATCAGGAAGATGA-CGCTTCATTATTTTAATCCACTTCTTTGTATCTC
7995100 ATTCAGGAAGACGGAT
194 ATT-AGGAAGACGGAT
* * * *
7995116 TTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTTTTTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGT
* * * * **
7995181 ATCTTATCAAGAAGATAGGGTTTGAAAGTTTCACTCATATTTGAGCTTCGTTTCATTGATTTG
66 ATCTCATCAAGAAGATTGGGTTTGGAAGTTTCACTCA-AATTGAGCTTCACTTCATTGATTTG
7995244 ACGTTTCACT
Statistics
Matches: 466, Mismatches: 70, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
207 13 0.03
208 261 0.56
209 159 0.34
210 12 0.03
211 21 0.05
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.40
Consensus pattern (208 bp):
TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGT
ATCTCATCAAGAAGATTGGGTTTGGAAGTTTCACTCAAATTGAGCTTCACTTCATTGATTTGGTC
TACTTCTCTATATCTCATCAGGAAGATGACGCTTCATTATTTTAATCCACTTCTTTGTATCTCAT
TAGGAAGACGGAT
Found at i:7995151 original size:86 final size:86
Alignment explanation
Indices: 7995027--7995184 Score: 244
Period size: 86 Copynumber: 1.8 Consensus size: 86
7995017 TCACTTCATT
* *
7995027 GATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGCTTTAACCCACTTCTC
7995092 TGTATCTAATTCAGGAAGACG
66 TGTATCTAATTCAGGAAGACG
* * * * * *
7995113 GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTTTT
1 GATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGCTTTAACCCACTTCTC
7995178 TGTATCT
66 TGTATCT
7995185 TATCAAGAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 64 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (86 bp):
GATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGCTTTAACCCACTTCTC
TGTATCTAATTCAGGAAGACG
Found at i:7995506 original size:49 final size:49
Alignment explanation
Indices: 7995430--7995878 Score: 427
Period size: 49 Copynumber: 9.1 Consensus size: 49
7995420 GTTTTCTTAA
* * ** *
7995430 GGTACTGGGTTCGCCGTTGCAGCCTCAACCTTTCCTTTCATATCTTTAT
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
* *
7995479 GGTACCGGGTTCGCCGTTGCGGGCTCAACCTTTCCCATCACATCTTTTAA
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATC-TTTAT
** * * *
7995529 GGTACCAAGTTCGCCGTTGCAGCCTCAACCTTTCCAATCACA-CTTCAT
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
** * * * * *
7995577 GGTGTCGGATTCGTCGTTGCGGCCTTAATCC-TTCCCATCACGTCTTCTAA
1 GGTACCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCCATCACATCTT-TAT
* * * *
7995627 GGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
* * * *
7995676 GGTATCGGGTTCGCCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAA
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTT-TAT
* * * * * *
7995726 AGTACC-GGTTCACTGTTGCGGCCTTAACCTTTCCCTTCATATCTTTAT
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
* * * * * *
7995774 GGTACCGAGTTCACCGTTGTGACCTCAACCTTTCCCATCATATCTTTTAA
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATC-TTTAT
* * * * * *
7995824 GGTACTGGGTTCGTCGTTACGGCCTCAACCTTTCCCTTCATATCTTCAT
1 GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
7995873 GGTACC
1 GGTACC
7995879 TCGGTTCATT
Statistics
Matches: 318, Mismatches: 74, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
48 39 0.12
49 158 0.50
50 121 0.38
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (49 bp):
GGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTTAT
Found at i:7995632 original size:98 final size:98
Alignment explanation
Indices: 7995427--7995876 Score: 474
Period size: 98 Copynumber: 4.6 Consensus size: 98
7995417 CATGTTTTCT
* * * * *
7995427 TAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCTTTCCTTTCATATCTTTATGGTACCGGGTTCG
1 TAAGGTAC-CGGTTCGCCGTTGCAGCCTCAACCTTTCCATTCAAATCTTCATGGTATCGGGTTCG
* *
7995492 CCGTTGCGGGCTCAACCTTTCCCATCACATCTTT
65 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * *
7995526 TAAGGTACCAAGTTCGCCGTTGCAGCCTCAACCTTTCCAATCACA-CTTCATGGTGTCGGATTCG
1 TAAGGTACC-GGTTCGCCGTTGCAGCCTCAACCTTTCCATTCAAATCTTCATGGTATCGGGTTCG
* * *
7995590 TCGTTGCGGCCTTAATCC-TTCCCATCACGTCTTC
65 CCGTTGCGGCCTCAA-CCTTTCCCATCACATCTTC
*
7995624 TAAGGTACCGGGTTCGCCGTTGC-GACCTCAACCTTTCCCTTCAAATCTTCATGGTATCGGGTTC
1 TAAGGTACC-GGTTCGCCGTTGCAG-CCTCAACCTTTCCATTCAAATCTTCATGGTATCGGGTTC
* *
7995688 GCCATTGCAGCCTCAACCTTTCCCATCACATCTTC
64 GCCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * * * * * * *
7995723 TAAAGTACCGGTTCACTGTTGCGGCCTTAACCTTTCCCTTCATATCTTTATGGTACCGAGTTCAC
1 TAAGGTACCGGTTCGCCGTTGCAGCCTCAACCTTTCCATTCAAATCTTCATGGTATCGGGTTCGC
* * * *
7995788 CGTTGTGACCTCAACCTTTCCCATCATATCTTT
66 CGTTGCGGCCTCAACCTTTCCCATCACATCTTC
* * * * * *
7995821 TAAGGTACTGGGTTCGTCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTA
1 TAAGGTAC-CGGTTCGCCGTTGCAGCCTCAACCTTTCCATTCAAATCTTCATGGTA
7995877 CCTCGGTTCA
Statistics
Matches: 295, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
97 1 0.00
98 161 0.55
99 133 0.45
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (98 bp):
TAAGGTACCGGTTCGCCGTTGCAGCCTCAACCTTTCCATTCAAATCTTCATGGTATCGGGTTCGC
CGTTGCGGCCTCAACCTTTCCCATCACATCTTC
Found at i:7995811 original size:197 final size:197
Alignment explanation
Indices: 7995427--7995878 Score: 552
Period size: 197 Copynumber: 2.3 Consensus size: 197
7995417 CATGTTTTCT
* *
7995427 TAAGGTACTGGGTTCGCCGTTGC-AGCCTCAACCTTTCCTTTCATATCTTTATGGTACCGGGTTC
1 TAAGGTACTGGGTTCGCCGTTGCGA-CCTCAACCTTTCCCTTCATATCTTCATGGTACCGGGTTC
* * * * * *
7995491 GCCGTTGCGGGCTCAACCTTTCCCATCACATCTTTTAAGGTACCAAGTTCGCCGTTGCAGCCTCA
65 GCCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAAGTACCAAGTTCACCGTTGCAGCCTCA
** ** * * *
7995556 ACCTTTCCAATCACACTTCATGGTGTCGGATTCGTCGTTGCGGCCTTAATCCTTCCCATCACGTC
130 ACCTTTCCAATCACACTTCATGGTACCGGATTCACCGTTGCGACCTCAATCCTTCCCATCACATC
7995621 TTC
195 TTC
* * *
7995624 TAAGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCAAATCTTCATGGTATCGGGTTCG
1 TAAGGTACTGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCGGGTTCG
* * * *
7995689 CCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAAGTACC-GGTTCACTGTTGCGGCCTTAA
66 CCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAAGTACCAAGTTCACCGTTGCAGCCTCAA
** * * * *
7995753 CCTTTCCCTTCATATCTTTATGGTACC-GAGTTCACCGTTGTGACCTCAA-CCTTTCCCATCATA
131 CCTTTCCAATCACA-CTTCATGGTACCGGA-TTCACCGTTGCGACCTCAATCC-TTCCCATCACA
*
7995816 TCTTT
193 TCTTC
* * *
7995821 TAAGGTACTGGGTTCGTCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTACC
1 TAAGGTACTGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACC
7995879 TCGGTTCATT
Statistics
Matches: 216, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
196 31 0.14
197 184 0.85
198 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (197 bp):
TAAGGTACTGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCGGGTTCG
CCATTGCAGCCTCAACCTTTCCCATCACATCTTCTAAAGTACCAAGTTCACCGTTGCAGCCTCAA
CCTTTCCAATCACACTTCATGGTACCGGATTCACCGTTGCGACCTCAATCCTTCCCATCACATCT
TC
Found at i:7996835 original size:20 final size:20
Alignment explanation
Indices: 7996812--7996878 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
7996802 TCGACCTCTC
7996812 CTTT-TTTTCCCTTTTTTCTT
1 CTTTCTTTTCCCTTTTTT-TT
* *
7996832 C-TT-TTTTCTCTTTTTGATT
1 CTTTCTTTTCCCTTTTT-TTT
*
7996851 -TTTCTTTTTCCTTTTTTTT
1 CTTTCTTTTCCCTTTTTTTT
7996870 CTTTCTTTT
1 CTTTCTTTT
7996879 TTATTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.78
Consensus pattern (20 bp):
CTTTCTTTTCCCTTTTTTTT
Found at i:7996840 original size:7 final size:7
Alignment explanation
Indices: 7996825--7996880 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
7996815 TTTTTCCCTT
7996825 TTTTCTTC
1 TTTT-TTC
7996833 TTTTTTC
1 TTTTTTC
*
7996840 TCTTTTTG
1 T-TTTTTC
*
7996848 ATTTTTC
1 TTTTTTC
*
7996855 TTTTTCC
1 TTTTTTC
7996862 TTTTTT-
1 TTTTTTC
*
7996868 TTCTTTC
1 TTTTTTC
7996875 TTTTTT
1 TTTTTT
7996881 ATTTATTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
6 5 0.13
7 24 0.63
8 9 0.24
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:7996855 original size:22 final size:21
Alignment explanation
Indices: 7996814--7996880 Score: 70
Period size: 20 Copynumber: 3.3 Consensus size: 21
7996804 GACCTCTCCT
*
7996814 TTTTTTCCCTTTT-TTC-TTC
1 TTTTTTCCTTTTTATTCTTTC
7996833 TTTTTTCTCTTTTTGATT-TTTC
1 TTTTTTC-CTTTTT-ATTCTTTC
*
7996855 -TTTTTCCTTTTTTTTCTTTC
1 TTTTTTCCTTTTTATTCTTTC
7996875 TTTTTT
1 TTTTTT
7996881 ATTTATTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 9 0.22
20 15 0.38
21 11 0.28
22 5 0.12
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (21 bp):
TTTTTTCCTTTTTATTCTTTC
Found at i:7996859 original size:31 final size:32
Alignment explanation
Indices: 7996823--7996897 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 32
7996813 TTTTTTTCCC
7996823 TTTTTTCTTCTTTTTTC-TCTTTTTGATTT-T
1 TTTTTTCTTCTTTTTTCTTCTTTTTGATTTAT
*
7996853 TCTTTTTCCTT-TTTTTTCTTTCTTTTTTATTTAT
1 T-TTTTT-CTTCTTTTTTC-TTCTTTTTGATTTAT
7996887 TTTTCTTCTTC
1 TTTT-TTCTTC
7996898 GAATCCGAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
30 1 0.03
31 12 0.32
32 3 0.08
33 17 0.46
34 4 0.11
ACGTcount: A:0.04, C:0.16, G:0.01, T:0.79
Consensus pattern (32 bp):
TTTTTTCTTCTTTTTTCTTCTTTTTGATTTAT
Found at i:7996880 original size:21 final size:21
Alignment explanation
Indices: 7996814--7996893 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
7996804 GACCTCTCCT
*
7996814 TTTTTTCC-CTTTTTTC-TTC
1 TTTTTTCCTTTTTTTTCTTTC
*
7996833 TTTTTTCTCTTTTTGATT-TTTC
1 TTTTTTC-CTTTTT-TTTCTTTC
7996855 -TTTTTCCTTTTTTTTCTTTC
1 TTTTTTCCTTTTTTTTCTTTC
*
7996875 TTTTTT-ATTTATTTTTCTT
1 TTTTTTCCTTT-TTTTTCTT
7996894 CTTCGAATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
19 9 0.18
20 14 0.28
21 22 0.44
22 5 0.10
ACGTcount: A:0.04, C:0.16, G:0.01, T:0.79
Consensus pattern (21 bp):
TTTTTTCCTTTTTTTTCTTTC
Found at i:7996895 original size:20 final size:19
Alignment explanation
Indices: 7996823--7996896 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 19
7996813 TTTTTTTCCC
7996823 TTTTTTCTTCTTTTTTCTCT
1 TTTTTTCTTCTTTTTTCT-T
* *
7996843 TTTTGATTTTTCTTTTTCCTT
1 TTTT--TTCTTCTTTTTTCTT
*
7996864 TTTTTTCTTTCTTTTTTATT
1 TTTTTTC-TTCTTTTTTCTT
7996884 TATTTTTCTTCTT
1 T-TTTTTCTTCTT
7996897 CGAATCCGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
19 2 0.04
20 20 0.44
21 11 0.24
22 12 0.27
ACGTcount: A:0.04, C:0.15, G:0.01, T:0.80
Consensus pattern (19 bp):
TTTTTTCTTCTTTTTTCTT
Found at i:7999685 original size:53 final size:52
Alignment explanation
Indices: 7999560--7999752 Score: 237
Period size: 52 Copynumber: 3.7 Consensus size: 52
7999550 ATTTCACTTC
** * *
7999560 ATTCATATACTCACGATGACACAGAGTCATCGGACCTCTTAATTCGTAAAGG
1 ATTCATATACTCACGATGACACTTAATCATCGGACCTCTTAATCCGTAAAGG
* * *
7999612 ATCCATATACTCACGATGACACTTAATCATCGGATCT-TTAAATCCATAAAGG
1 ATTCATATACTCACGATGACACTTAATCATCGGACCTCTT-AATCCGTAAAGG
* * *
7999664 ATTTCATATATTCACGATGACAC-AAAGTCATCGGACCTCGTAATCCGTAAAGG
1 A-TTCATATACTCACGATGACACTTAA-TCATCGGACCTCTTAATCCGTAAAGG
* *
7999717 ATTCATTTACTCACGATGACACTTAGTCATCGGACC
1 ATTCATATACTCACGATGACACTTAATCATCGGACC
7999753 CTTTTTCATT
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
51 2 0.02
52 74 0.62
53 42 0.35
54 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACTTAATCATCGGACCTCTTAATCCGTAAAGG
Found at i:7999747 original size:105 final size:105
Alignment explanation
Indices: 7999561--7999750 Score: 317
Period size: 105 Copynumber: 1.8 Consensus size: 105
7999551 TTTCACTTCA
* * *
7999561 TTCATATACTCACGATGACACAGAGTCATCGGACCTCTTAATTCGTAAAGGATCCATATACTCAC
1 TTCATATACTCACGATGACACAAAGTCATCGGACCTCGTAATCCGTAAAGGATCCATATACTCAC
7999626 GATGACACTTAATCATCGGATCTTTAAATCCATAAAGGAT
66 GATGACACTTAATCATCGGATCTTTAAATCCATAAAGGAT
* * *
7999666 TTCATATATTCACGATGACACAAAGTCATCGGACCTCGTAATCCGTAAAGGATTCATTTACTCAC
1 TTCATATACTCACGATGACACAAAGTCATCGGACCTCGTAATCCGTAAAGGATCCATATACTCAC
*
7999731 GATGACACTTAGTCATCGGA
66 GATGACACTTAATCATCGGA
7999751 CCCTTTTTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 78 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (105 bp):
TTCATATACTCACGATGACACAAAGTCATCGGACCTCGTAATCCGTAAAGGATCCATATACTCAC
GATGACACTTAATCATCGGATCTTTAAATCCATAAAGGAT
Found at i:8002815 original size:21 final size:20
Alignment explanation
Indices: 8002791--8002831 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8002781 GCTTAGAGAT
*
8002791 TCTTCTAGCTCTGTTACTTTA
1 TCTTCTAGCTCGGTTA-TTTA
8002812 TCTTCTAGCTCGGTTATTTA
1 TCTTCTAGCTCGGTTATTTA
8002832 GGCTTTCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.15, C:0.22, G:0.12, T:0.51
Consensus pattern (20 bp):
TCTTCTAGCTCGGTTATTTA
Found at i:8004669 original size:29 final size:29
Alignment explanation
Indices: 8004637--8004814 Score: 143
Period size: 30 Copynumber: 6.1 Consensus size: 29
8004627 AAAAATAAAA
*
8004637 TTTTGAAAAGTTTGGGG-CTAAATTTGAAT
1 TTTTGAAAAGTTTGGGGTC-AAATGTGAAT
** * *
8004666 TTTTGAAAAGTTTACAGGTCAAATCTAAAT
1 TTTTGAAAAGTTT-GGGGTCAAATGTGAAT
*
8004696 TTTTGGAAAGTTTAGGGGTCAAATGTG-AT
1 TTTTGAAAAGTTT-GGGGTCAAATGTGAAT
* *
8004725 TTTTG-GAAGTTTGAGGTCAAAATGTG-AT
1 TTTTGAAAAGTTTGGGGTC-AAATGTGAAT
*
8004753 TTTTGAAAAGTTTGGGGGTCAAAT-TCAAAT
1 TTTTGAAAAGTTT-GGGGTCAAATGT-GAAT
* *
8004783 TTTTGGAAAGTTTAAGGGTCAAAATGT-AAT
1 TTTTGAAAAGTTT-GGGGTC-AAATGTGAAT
8004813 TT
1 TT
8004815 CTAAAATATT
Statistics
Matches: 123, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
27 5 0.04
28 21 0.17
29 30 0.24
30 61 0.50
31 5 0.04
32 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.39
Consensus pattern (29 bp):
TTTTGAAAAGTTTGGGGTCAAATGTGAAT
Found at i:8006165 original size:24 final size:24
Alignment explanation
Indices: 8006124--8006335 Score: 246
Period size: 24 Copynumber: 8.8 Consensus size: 24
8006114 TTTCTTATAA
**
8006124 TCATGCTGATAAGCGTAAACGTAT
1 TCATGCTGACGAGCGTAAACGTAT
* * *
8006148 TCATGCTAACGAGTGTAAACATAT
1 TCATGCTGACGAGCGTAAACGTAT
* *
8006172 TCATGCTGACGAGCATAAACGTTT
1 TCATGCTGACGAGCGTAAACGTAT
* ** *
8006196 TCATGCTGGCGAGCGTAAATATTT
1 TCATGCTGACGAGCGTAAACGTAT
*
8006220 TCATGCTAACGAGCGTAAATC-TAT
1 TCATGCTGACGAGCGTAAA-CGTAT
*
8006244 TCATGCTGGCGAGCGTAAACGTAT
1 TCATGCTGACGAGCGTAAACGTAT
*
8006268 CCATGCTGACGAGCGTAAACGTAT
1 TCATGCTGACGAGCGTAAACGTAT
* * *
8006292 TCATGCTGATGAGAGTAAAAGTAT
1 TCATGCTGACGAGCGTAAACGTAT
*
8006316 TCATGCTGACGAGCATAAAC
1 TCATGCTGACGAGCGTAAAC
8006336 ATAATGAACT
Statistics
Matches: 156, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
23 1 0.01
24 155 0.99
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (24 bp):
TCATGCTGACGAGCGTAAACGTAT
Found at i:8006523 original size:14 final size:14
Alignment explanation
Indices: 8006504--8006534 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8006494 ATTAAATATT
8006504 ATATGACCTGGAAG
1 ATATGACCTGGAAG
8006518 ATATGACCTGGAAG
1 ATATGACCTGGAAG
8006532 ATA
1 ATA
8006535 GTTAATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (14 bp):
ATATGACCTGGAAG
Found at i:8007995 original size:19 final size:19
Alignment explanation
Indices: 8007958--8008006 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
8007948 TTAAAATCAC
8007958 AATTAAAAGGAATAAATTTA
1 AATTAAAA-GAATAAATTTA
8007978 AATTAAAA-AATAAAATTTA
1 AATTAAAAGAAT-AAATTTA
8007997 AA-TAAAAGAA
1 AATTAAAAGAA
8008007 GACATATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.30
19 11 0.41
20 8 0.30
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
AATTAAAAGAATAAATTTA
Found at i:8008042 original size:70 final size:69
Alignment explanation
Indices: 8007957--8008094 Score: 197
Period size: 70 Copynumber: 2.0 Consensus size: 69
8007947 ATTAAAATCA
*
8007957 CAATTAAAAGGAATAAATTTAAA-TTAAAAAATAAAATTTAAATAAAAGAAGACATATTTAAAGA
1 CAATTAAAAGAAATAAA-TTAAATTTAAAAAATAAAATTTAAATAAAAGAA-ACATATTTAAAGA
8008021 ATAAAT
64 ATAAAT
* * * *
8008027 CAATTTAAAGAAATAAATTAAATTTTAAAAAATATAATTTAAATTAAATAAACATATTTAAAGAA
1 CAATTAAAAGAAATAAATTAAA-TTTAAAAAATAAAATTTAAATAAAAGAAACATATTTAAAGAA
8008092 TAA
65 TAA
8008095 TAAATTATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
69 5 0.08
70 32 0.52
71 24 0.39
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (69 bp):
CAATTAAAAGAAATAAATTAAATTTAAAAAATAAAATTTAAATAAAAGAAACATATTTAAAGAAT
AAAT
Found at i:8008068 original size:21 final size:20
Alignment explanation
Indices: 8008013--8008071 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
8008003 AGAAGACATA
*
8008013 TTTAAAG-AATAAA-TCAA-
1 TTTAAAGAAATAAATTAAAT
8008030 TTTAAAGAAATAAATTAAAT
1 TTTAAAGAAATAAATTAAAT
8008050 TTTAAA-AAATATAATTTAAAT
1 TTTAAAGAAATA-AA-TTAAAT
8008071 T
1 T
8008072 AAATAAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 7 0.19
18 6 0.17
19 8 0.22
20 8 0.22
21 7 0.19
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (20 bp):
TTTAAAGAAATAAATTAAAT
Found at i:8008073 original size:19 final size:19
Alignment explanation
Indices: 8007958--8008088 Score: 57
Period size: 19 Copynumber: 7.1 Consensus size: 19
8007948 TTAAAATCAC
8007958 AATTAAAAGGAATA-AATTTA
1 AATTAAAA--AATATAATTTA
*
8007978 AATTAAAAAATAAAATTTA
1 AATTAAAAAATATAATTTA
* *
8007997 AA-TAAAAGAAGACATATTTA
1 AATTAAAA-AATATA-ATTTA
* * *
8008017 AA-GAATAAAT-CAATTTA
1 AATTAAAAAATATAATTTA
* *
8008034 AA-GAAATAAAT-TAAATT-
1 AATTAAA-AAATATAATTTA
8008051 --TTAAAAAATATAATTTA
1 AATTAAAAAATATAATTTA
*
8008068 AATTAAATAAACAT-ATTTA
1 AATTAAA-AAATATAATTTA
8008087 AA
1 AA
8008089 GAATAATAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
15 4 0.04
16 8 0.09
17 10 0.11
18 19 0.21
19 26 0.29
20 23 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
AATTAAAAAATATAATTTA
Found at i:8008756 original size:23 final size:23
Alignment explanation
Indices: 8008730--8008775 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
8008720 ATATGATAAA
8008730 TTTA-TTTATATAATTTATAATTG
1 TTTATTTTATATAATTTA-AATTG
8008753 TTTATTTTATATAATTTAAATTG
1 TTTATTTTATATAATTTAAATTG
8008776 AATTTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTATTTTATATAATTTAAATTG
Found at i:8013027 original size:18 final size:18
Alignment explanation
Indices: 8013004--8013048 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 18
8012994 AACATCAATT
8013004 TTAAAAAAT-AAATTTAAA
1 TTAAAAAATAAAATTT-AA
8013022 TTAAAAAATAAAATTTAA
1 TTAAAAAATAAAATTTAA
8013040 TTAGAAAAA
1 TTA-AAAAA
8013049 AAACATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
TTAAAAAATAAAATTTAA
Found at i:8013077 original size:17 final size:17
Alignment explanation
Indices: 8013055--8013104 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
8013045 AAAAAAACAT
*
8013055 ATTTAAAGAATATATCA
1 ATTTAAAGAATATATAA
*
8013072 ATTTAAAGTAATAAATTAA
1 ATTTAAAG-AATATA-TAA
8013091 ATTTAAA-AATATAT
1 ATTTAAAGAATATAT
8013105 TTTAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 1 0.04
17 13 0.46
18 5 0.18
19 9 0.32
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (17 bp):
ATTTAAAGAATATATAA
Found at i:8013269 original size:6 final size:6
Alignment explanation
Indices: 8013258--8013291 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
8013248 AAAAAAGGAA
8013258 ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG ATGG
1 ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG ATGG
8013292 CTGAAAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (6 bp):
ATGGTG
Found at i:8019909 original size:30 final size:30
Alignment explanation
Indices: 8019842--8019910 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
8019832 GCTCTATTTG
* *
8019842 ATATGGTTTCGGTTCCCATCAAGTTAATAG
1 ATATGGTTTCGGTTCCCATCAAGTTAAAAA
8019872 ATATGGTTT-GGTTCCCATCAAGTTTAAGAAA
1 ATATGGTTTCGGTTCCCATCAAG-TTAA-AAA
8019903 AT-TGGTTT
1 ATATGGTTT
8019911 TGTTTTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 13 0.37
30 19 0.54
31 3 0.09
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (30 bp):
ATATGGTTTCGGTTCCCATCAAGTTAAAAA
Found at i:8021422 original size:13 final size:14
Alignment explanation
Indices: 8021402--8021443 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
8021392 AATAATTAAC
8021402 ATTAATAAAATAAT
1 ATTAATAAAATAAT
*
8021416 -TTCATAAAA-AAT
1 ATTAATAAAATAAT
8021428 ATTAATAAAAT-AT
1 ATTAATAAAATAAT
8021441 ATT
1 ATT
8021444 CAAGTTTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 21 0.88
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTAATAAAATAAT
Found at i:8035800 original size:62 final size:62
Alignment explanation
Indices: 8035664--8035896 Score: 207
Period size: 62 Copynumber: 3.9 Consensus size: 62
8035654 TTTGCATTTG
* * * * * * *
8035664 ATACTCACGATGACACAGAGTCATCGGA-CATTTGATTCCTAATTGAATTCATATT--TTTTA
1 ATACTCACGATGACACAAAATCATCGAACCTTTTAATTCATAATAGAATTCAT-TTCATTTTA
* *
8035724 ATACTCACGATGACACAAAGTCATCGGACCTTTTAATTCATAATAGAATTCATTTCATTTTA
1 ATACTCACGATGACACAAAATCATCGAACCTTTTAATTCATAATAGAATTCATTTCATTTTA
* * * * * * *
8035786 ATACTCAAGATGACACAAAATAATTGAACCTTTTAATCCGTAGTAG----GA-TTCA-TTTA
1 ATACTCACGATGACACAAAATCATCGAACCTTTTAATTCATAATAGAATTCATTTCATTTTA
* * *
8035842 ATATTCATGATGACACAAAATCATCGAACCTTTTAA-TCAGTAATAGGATTCATTT
1 ATACTCACGATGACACAAAATCATCGAACCTTTTAATTCA-TAATAGAATTCATTT
8035897 AATACTCACA
Statistics
Matches: 142, Mismatches: 22, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
55 1 0.01
56 41 0.29
57 4 0.03
58 1 0.01
60 30 0.21
61 22 0.15
62 43 0.30
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (62 bp):
ATACTCACGATGACACAAAATCATCGAACCTTTTAATTCATAATAGAATTCATTTCATTTTA
Found at i:8035871 original size:56 final size:56
Alignment explanation
Indices: 8035777--8035913 Score: 195
Period size: 56 Copynumber: 2.4 Consensus size: 56
8035767 TAGAATTCAT
* * *
8035777 TTCATTTTAATACTCAAGATGACACAAAATAATTGAACCTTTTAATCCGTAGTAGGA
1 TTCA-TTTAATACTCAAGATGACACAAAATAATCGAACCTTTTAATCAGTAATAGGA
* * *
8035834 TTCATTTAATATTCATGATGACACAAAATCATCGAACCTTTTAATCAGTAATAGGA
1 TTCATTTAATACTCAAGATGACACAAAATAATCGAACCTTTTAATCAGTAATAGGA
8035890 TTCATTTAATACTCACA-ATGACAC
1 TTCATTTAATACTCA-AGATGACAC
8035914 CTATAAGTCA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
56 67 0.94
57 4 0.06
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.34
Consensus pattern (56 bp):
TTCATTTAATACTCAAGATGACACAAAATAATCGAACCTTTTAATCAGTAATAGGA
Found at i:8047147 original size:55 final size:54
Alignment explanation
Indices: 8047085--8047212 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 54
8047075 GGCACATGGT
** * **
8047085 CTAGCCCACAGCCGTGTGACCCATTTTTGAAATCGCACACGGGTAGGCCCACAGC
1 CTAGCCCAC-GCCGTGTGACCCATTTTCAAAATCACACACGGACAGGCCCACAGC
* * *
8047140 CTAGCCCACGATCGTGTGACCCATTTTCAAAATTACACACGGACAGGCCCACGGC
1 CTAGCCCACG-CCGTGTGACCCATTTTCAAAATCACACACGGACAGGCCCACAGC
*
8047195 CTAGCACACGGCCGTGTG
1 CTAGCCCAC-GCCGTGTG
8047213 CCCCTGTTTC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
54 1 0.02
55 59 0.97
56 1 0.02
ACGTcount: A:0.24, C:0.34, G:0.23, T:0.18
Consensus pattern (54 bp):
CTAGCCCACGCCGTGTGACCCATTTTCAAAATCACACACGGACAGGCCCACAGC
Found at i:8049324 original size:80 final size:81
Alignment explanation
Indices: 8049230--8049421 Score: 251
Period size: 80 Copynumber: 2.4 Consensus size: 81
8049220 TGCTTAGTTA
* * * *
8049230 CGGATTCTTGATAGCTTCTGTGAGCAGCATCGTGAGTGGATTATATGGACCCTCT-GATAGCTGA
1 CGGATTCTTGATAGCTTCTGTGAGCAGCATCGTGAGTGGATAATATGGACCATATCAATAGCTGA
*
8049294 AATCTTGCATATGTTG
66 AATATTGCATATGTTG
* * *
8049310 CGGATTCTTGATAGCTTCTGTCAGCAGCATCGTGAGTGGATAATATGGACCATATCAATGGCTGG
1 CGGATTCTTGATAGCTTCTGTGAGCAGCATCGTGAGTGGATAATATGGACCATATCAATAGCTGA
*
8049375 GATATTGCATATGTTG
66 AATATTGCATATGTTG
* * * * *
8049391 CAGTTTCCTGACAGCTTGTGTGAGCAGCATC
1 CGGATTCTTGATAGCTTCTGTGAGCAGCATC
8049422 ATATACTGGT
Statistics
Matches: 96, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 51 0.53
81 45 0.47
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (81 bp):
CGGATTCTTGATAGCTTCTGTGAGCAGCATCGTGAGTGGATAATATGGACCATATCAATAGCTGA
AATATTGCATATGTTG
Found at i:8049492 original size:25 final size:26
Alignment explanation
Indices: 8049446--8049508 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 26
8049436 TTTTGTCCGA
*
8049446 GCTCGTAAGAGCGATATACTGT-TTG
1 GCTCGTAAGAGCGATATACTGTCTAG
*
8049471 GCTCGTAAGAGCG-TGATTCTGTCTAG
1 GCTCGTAAGAGCGAT-ATACTGTCTAG
*
8049497 GCTCGTATGAGC
1 GCTCGTAAGAGC
8049509 TAAATATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 19 0.58
26 13 0.39
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (26 bp):
GCTCGTAAGAGCGATATACTGTCTAG
Found at i:8051436 original size:88 final size:89
Alignment explanation
Indices: 8051319--8051546 Score: 259
Period size: 90 Copynumber: 2.6 Consensus size: 89
8051309 AACTAAAACG
* * * *
8051319 CCTTTTTAATGTA-TTTGACAGTTCAAGTACCCAATTGAATGC-AAAAAAA-TCGAGGACATAAT
1 CCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAGTAG-GGACATAAT
* *
8051381 TGCTTTTTTT-GAAAAAGTTTGAGGG
65 TG-TTTTTTTAAAAAAAGTTTGAGGA
* * *
8051406 TCTTTTTGATGCATTTTGAAAGTTCAAGTACACAATT-AAGTGCAAAATAAAAGTAGGGACTTAA
1 CCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAA-TGCAAAA-AAAAGTAGGGACATAA
8051470 TTGTTTTTTTAAAAAAAGTTTGAGGA
64 TTGTTTTTTTAAAAAAAGTTTGAGGA
* * * * *
8051496 CCTTTTTGATGCATTTTAAAAGTTCAAGTATCCAAGTGAGTACAAAAAAAA
1 CCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAA
8051547 AGTAAGGGCT
Statistics
Matches: 118, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
87 12 0.10
88 24 0.20
89 14 0.12
90 65 0.55
91 3 0.03
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (89 bp):
CCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAGTAGGGACATAATT
GTTTTTTTAAAAAAAGTTTGAGGA
Found at i:8051592 original size:90 final size:89
Alignment explanation
Indices: 8051372--8051570 Score: 242
Period size: 90 Copynumber: 2.2 Consensus size: 89
8051362 AAAAAATCGA
* * *
8051372 GGACATAATTGCTTTTTTT-GAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGACTTAATT-CTTTTTTTAAAAAAAGTTTGAGGG-CTTTTTGATGCATTTTAAAAGTTCAAGTA
* * *
8051436 CACAATTAAGTGCAAAATAAAAGTAG
64 CACAAGTAAGTACAAAAAAAAAGTAG
* *
8051462 GGACTTAATTGTTTTTTTAAAAAAAGTTTGAGGACCTTTTTGATGCATTTTAAAAGTTCAAGTAT
1 GGACTTAATTCTTTTTTTAAAAAAAGTTTGAGG-GCTTTTTGATGCATTTTAAAAGTTCAAGTA-
*
8051527 C-CAAGTGAGTACAAAAAAAAAGTAAG
64 CACAAGTAAGTACAAAAAAAAAGT-AG
8051553 GG-CTTAATTACTTTTTTT
1 GGACTTAATT-CTTTTTTT
8051571 TTTTTAAGTT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
89 7 0.07
90 75 0.80
91 12 0.13
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (89 bp):
GGACTTAATTCTTTTTTTAAAAAAAGTTTGAGGGCTTTTTGATGCATTTTAAAAGTTCAAGTACA
CAAGTAAGTACAAAAAAAAAGTAG
Found at i:8052269 original size:11 final size:10
Alignment explanation
Indices: 8052228--8052345 Score: 51
Period size: 10 Copynumber: 12.4 Consensus size: 10
8052218 GACATGTAGC
*
8052228 AAAAAATGAT
1 AAAAAATTAT
*
8052238 AAAAAA-AAT
1 AAAAAATTAT
8052247 -AAAAATTAT
1 AAAAAATTAT
8052256 AAAAAATTACT
1 AAAAAATTA-T
*
8052267 ---AAATTCT
1 AAAAAATTAT
*
8052274 AATAAAAATAT
1 AA-AAAATTAT
* *
8052285 TAAAAATTAGA
1 AAAAAATTA-T
8052296 AAAGAAATTAT
1 AAA-AAATTAT
*
8052307 -AAAAATCAT
1 AAAAAATTAT
8052316 -AAAAA-TAT
1 AAAAAATTAT
8052324 -AAAAA-TAT
1 AAAAAATTAT
8052332 AAATAAA-TAT
1 AAA-AAATTAT
8052342 AAAA
1 AAAA
8052346 TTCGTAAAAG
Statistics
Matches: 85, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
7 1 0.01
8 20 0.24
9 18 0.21
10 31 0.36
11 9 0.11
12 6 0.07
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:8052290 original size:39 final size:37
Alignment explanation
Indices: 8052229--8052367 Score: 117
Period size: 35 Copynumber: 3.7 Consensus size: 37
8052219 ACATGTAGCA
* *
8052229 AAAAATGATAAAAAAAATAAAAATTATAAA-AAATTACT
1 AAAAATCAT-AAAAATATAAAAATTATAAAGAAATTA-T
* *
8052267 -AAATTCTAATAAAAATATTAAAAATTAGAAAAGAAATTAT
1 AAAAATC--ATAAAAATA-TAAAAATTA-TAAAGAAATTAT
*
8052307 AAAAATCATAAAAATATAAAAA-TATAAATAAA-TAT
1 AAAAATCATAAAAATATAAAAATTATAAAGAAATTAT
* *
8052342 AAAATTCGTAAAAGA-ATAAAAATTAT
1 AAAAATCATAAAA-ATATAAAAATTAT
8052368 TGTATCCCAT
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
35 21 0.25
36 10 0.12
37 6 0.07
38 12 0.14
39 20 0.24
40 4 0.05
41 11 0.13
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.27
Consensus pattern (37 bp):
AAAAATCATAAAAATATAAAAATTATAAAGAAATTAT
Found at i:8052312 original size:9 final size:9
Alignment explanation
Indices: 8052229--8052345 Score: 62
Period size: 9 Copynumber: 12.4 Consensus size: 9
8052219 ACATGTAGCA
*
8052229 AAAAATGAT
1 AAAAATTAT
**
8052238 AAAAAAAAT
1 AAAAATTAT
8052247 AAAAATTAT
1 AAAAATTAT
8052256 AAAAAATTACT
1 -AAAAATTA-T
*
8052267 -AAATTCTAAT
1 AAAAAT-T-AT
8052277 AAAAA-TATT
1 AAAAATTA-T
*
8052286 AAAAATTAGAA
1 AAAAATT--AT
8052297 AAGAAATTAT
1 AA-AAATTAT
*
8052307 AAAAATCAT
1 AAAAATTAT
8052316 AAAAA-TAT
1 AAAAATTAT
8052324 AAAAA-TAT
1 AAAAATTAT
*
8052332 AAATAAATAT
1 AAA-AATTAT
8052342 AAAA
1 AAAA
8052346 TTCGTAAAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
8 14 0.16
9 39 0.45
10 20 0.23
11 7 0.08
12 6 0.07
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (9 bp):
AAAAATTAT
Found at i:8052807 original size:9 final size:9
Alignment explanation
Indices: 8052784--8052821 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
8052774 TTCATTGATA
8052784 TTATAA-TT
1 TTATAATTT
8052792 TTATAATTT
1 TTATAATTT
*
8052801 TTGTAATTT
1 TTATAATTT
8052810 TTATAATATT
1 TTATAAT-TT
8052820 TT
1 TT
8052822 TTTACAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 6 0.23
9 16 0.62
10 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (9 bp):
TTATAATTT
Found at i:8052858 original size:28 final size:28
Alignment explanation
Indices: 8052827--8052897 Score: 69
Period size: 30 Copynumber: 2.5 Consensus size: 28
8052817 ATTTTTTTAC
8052827 AAATTTATATTTTTACT-A-TTTTATAAA
1 AAATTTATATTTTTA-TGATTTTTATAAA
8052854 TAAA-TTATAATTTTTTATGATTTTTATAAA
1 -AAATTTAT-A-TTTTTATGATTTTTATAAA
*
8052884 AAATATAT-TTTTTA
1 AAATTTATATTTTTA
8052898 ATAAATCCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
27 10 0.27
28 5 0.14
29 10 0.27
30 12 0.32
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (28 bp):
AAATTTATATTTTTATGATTTTTATAAA
Found at i:8052942 original size:9 final size:9
Alignment explanation
Indices: 8052914--8053024 Score: 73
Period size: 9 Copynumber: 11.8 Consensus size: 9
8052904 CCTTTACGAC
8052914 TTTTTAT-A
1 TTTTTATAA
* *
8052922 TTTTTGTGA
1 TTTTTATAA
8052931 TTTTTATAA
1 TTTTTATAA
*
8052940 TTTTT-TCTA
1 TTTTTAT-AA
*
8052949 TTGTTAATAAA
1 TT-TTTAT-AA
*
8052960 TTTTTAATAT
1 TTTTT-ATAA
8052970 TTTTTATAA
1 TTTTTATAA
8052979 TTTTTATAA
1 TTTTTATAA
* *
8052988 CTTTTAATATT
1 -TTTTTATA-A
8052999 TTTTTATAA
1 TTTTTATAA
*
8053008 TTTTTATTGA
1 TTTTTA-TAA
8053018 TTTTTAT
1 TTTTTAT
8053025 TTTTATCATT
Statistics
Matches: 80, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
8 7 0.09
9 35 0.44
10 32 0.40
11 6 0.08
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.68
Consensus pattern (9 bp):
TTTTTATAA
Found at i:8052970 original size:20 final size:19
Alignment explanation
Indices: 8052936--8052984 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8052926 TGTGATTTTT
**
8052936 ATAATTTTTTCTATTGTTA
1 ATAATTTTTAATATTGTTA
* *
8052955 ATAAATTTTTAATATTTTTT
1 AT-AATTTTTAATATTGTTA
8052975 ATAATTTTTA
1 ATAATTTTTA
8052985 TAACTTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
ATAATTTTTAATATTGTTA
Found at i:8052972 original size:29 final size:28
Alignment explanation
Indices: 8052930--8053011 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
8052920 TATTTTTGTG
* * *
8052930 ATTTTT-ATAATTTTTTCTATTGTTAATAA
1 ATTTTTAAT-ATTTTTTATAATTTTAAT-A
*
8052959 ATTTTTAATATTTTTTATAATTTTTATA
1 ATTTTTAATATTTTTTATAATTTTAATA
*
8052987 ACTTTTAATATTTTTTTATAATTTT
1 ATTTTTAATA-TTTTTTATAATTTT
8053012 TATTGATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 10 0.22
29 34 0.74
30 2 0.04
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (28 bp):
ATTTTTAATATTTTTTATAATTTTAATA
Found at i:8052995 original size:39 final size:39
Alignment explanation
Indices: 8052930--8053024 Score: 97
Period size: 39 Copynumber: 2.4 Consensus size: 39
8052920 TATTTTTGTG
*
8052930 ATTTTTATAATTTTT-TCTATTGTTAATAAATTTTTAATA
1 ATTTTTATAATTTTTATCAATTGTTAAT-AATTTTTAATA
* * *
8052969 TTTTTTATAATTTTTAT-AACTT-TTAATATTTTTTTATA
1 ATTTTTATAATTTTTATCAA-TTGTTAATAATTTTTAATA
*
8053007 ATTTTTATTGATTTTTAT
1 ATTTTTA-TAATTTTTAT
8053025 TTTTATCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
38 15 0.32
39 29 0.62
40 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (39 bp):
ATTTTTATAATTTTTATCAATTGTTAATAATTTTTAATA
Found at i:8054989 original size:29 final size:29
Alignment explanation
Indices: 8054947--8055063 Score: 101
Period size: 29 Copynumber: 4.1 Consensus size: 29
8054937 GGGGGTAGGA
*
8054947 ATTTGCATCCGTAATTGTATTTGTATTAT
1 ATTTGCATCTGTAATTGTATTTGTATTAT
* * * *
8054976 ATTTGTATCTGTAATTGTATCTGCAATAT
1 ATTTGCATCTGTAATTGTATTTGTATTAT
* * * *
8055005 ATATGCATTTATAATTGTATGTGTATTAT
1 ATTTGCATCTGTAATTGTATTTGTATTAT
* * * * *
8055034 ATCTGTATTTGGAATTGTA-TTATATTAT
1 ATTTGCATCTGTAATTGTATTTGTATTAT
8055062 AT
1 AT
8055064 CTGACCTTCT
Statistics
Matches: 70, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
28 9 0.13
29 61 0.87
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (29 bp):
ATTTGCATCTGTAATTGTATTTGTATTAT
Found at i:8061440 original size:29 final size:29
Alignment explanation
Indices: 8061399--8061587 Score: 213
Period size: 29 Copynumber: 6.5 Consensus size: 29
8061389 AACGGAGTCA
* * *
8061399 AAAAT-GTGATTTTTGGATACCCGAGGGT
1 AAAATGGTAATTTTTGGACACTCGAGGGT
*
8061427 AAAATGGTAATTTTTGGACACTCGGGGGT
1 AAAATGGTAATTTTTGGACACTCGAGGGT
*
8061456 AAAAAT-GTAATTTTTGGACA-TCTGGGGGT
1 -AAAATGGTAATTTTTGGACACTC-GAGGGT
* * *
8061485 AAAATGGTAATTTTTGGAAACTCGAGAGC
1 AAAATGGTAATTTTTGGACACTCGAGGGT
* * *
8061514 AAAATATGTAATTTTTAGACATTCGAGGGT
1 AAAAT-GGTAATTTTTGGACACTCGAGGGT
* *
8061544 AAAATTGTAATTTTTGGACATTCGAGGGT
1 AAAATGGTAATTTTTGGACACTCGAGGGT
8061573 AAAATGGTAATTTTT
1 AAAATGGTAATTTTT
8061588 AGAAGTTTAG
Statistics
Matches: 139, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
28 12 0.09
29 97 0.70
30 30 0.22
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGACACTCGAGGGT
Found at i:8061546 original size:88 final size:87
Alignment explanation
Indices: 8061399--8061587 Score: 247
Period size: 88 Copynumber: 2.2 Consensus size: 87
8061389 AACGGAGTCA
* * * * * *
8061399 AAAAT-GTGATTTTTGGATACCCGAGGGTAAAATGGTAATTTTTGGACACTCGGGGGTAAAAATG
1 AAAATGGTAATTTTTGGAAACCCGAGAGCAAAATGGTAATTTTTAGACACTCGAGGGTAAAAATG
*
8061463 TAATTTTTGGACA-TCTGGGGGT
66 TAATTTTTGGACATTC-GAGGGT
* * * *
8061485 AAAATGGTAATTTTTGGAAACTCGAGAGCAAAATATGTAATTTTTAGACATTCGAGGGTAAAATT
1 AAAATGGTAATTTTTGGAAACCCGAGAGCAAAAT-GGTAATTTTTAGACACTCGAGGGTAAAAAT
8061550 GTAATTTTTGGACATTCGAGGGT
65 GTAATTTTTGGACATTCGAGGGT
8061573 AAAATGGTAATTTTT
1 AAAATGGTAATTTTT
8061588 AGAAGTTTAG
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
86 5 0.06
87 23 0.26
88 59 0.66
89 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (87 bp):
AAAATGGTAATTTTTGGAAACCCGAGAGCAAAATGGTAATTTTTAGACACTCGAGGGTAAAAATG
TAATTTTTGGACATTCGAGGGT
Found at i:8061554 original size:59 final size:58
Alignment explanation
Indices: 8061420--8061590 Score: 229
Period size: 59 Copynumber: 2.9 Consensus size: 58
8061410 TTTGGATACC
* *
8061420 CGAGGGTAAAATGGTAATTTTTGGACACTCGGGGGTAAAA-ATGTAATTTTTGGACAT
1 CGAGGGTAAAATGGTAATTTTTGGACACTCGAGGGTAAAATATGTAATTTTTAGACAT
* * * *
8061477 CTGGGGGTAAAATGGTAATTTTTGGAAACTCGAGAGCAAAATATGTAATTTTTAGACATT
1 C-GAGGGTAAAATGGTAATTTTTGGACACTCGAGGGTAAAATATGTAATTTTTAGACA-T
* * *
8061537 CGAGGGTAAAATTGTAATTTTTGGACATTCGAGGGTAAAAT-GGTAATTTTTAGA
1 CGAGGGTAAAATGGTAATTTTTGGACACTCGAGGGTAAAATATGTAATTTTTAGA
8061591 AGTTTAGGGG
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
57 1 0.01
58 46 0.47
59 49 0.50
60 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.33
Consensus pattern (58 bp):
CGAGGGTAAAATGGTAATTTTTGGACACTCGAGGGTAAAATATGTAATTTTTAGACAT
Found at i:8061604 original size:88 final size:87
Alignment explanation
Indices: 8061433--8061693 Score: 253
Period size: 88 Copynumber: 3.0 Consensus size: 87
8061423 GGGTAAAATG
* * *
8061433 GTAATTTTTGGACACTCGGGGGTAAAAATGTAATTTTTGGACA-TCTGGGGGTAAAATGGTAATT
1 GTAATTTTTAGACATTC-GGGGTAAAATTGTAATTTTTGGACATTC-GGGGGTAAAATGGTAATT
** * *
8061497 TTTGGAA-ACTCGAGAGCAAAATAT
64 TTTGGAAGTTTAG-GGGCAAAATAT
*
8061521 GTAATTTTTAGACATTCGAGGGTAAAATTGTAATTTTTGGACATTCGAGGGTAAAATGGTAATTT
1 GTAATTTTTAGACATTCG-GGGTAAAATTGTAATTTTTGGACATTCGGGGGTAAAATGGTAATTT
*
8061586 TTAGAAGTTTAGGGGCAAAA-AT
65 TTGGAAGTTTAGGGGCAAAATAT
** * * * * * *
8061608 GGGATTTTTTGA-AGCTTAGGGGTAAAATGGTAATATTTGGA-AGTTCGGGGGCAAAATGGTAGT
1 GTAATTTTTAGACA--TTCGGGGTAAAATTGTAATTTTTGGACA-TTCGGGGGTAAAATGGTAAT
* *
8061671 TTTTGGAAGTTCAAGGGCAAAAT
63 TTTTGGAAGTTTAGGGGCAAAAT
8061694 GGGATTTTTT
Statistics
Matches: 145, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
86 2 0.01
87 68 0.47
88 71 0.49
89 4 0.03
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (87 bp):
GTAATTTTTAGACATTCGGGGTAAAATTGTAATTTTTGGACATTCGGGGGTAAAATGGTAATTTT
TGGAAGTTTAGGGGCAAAATAT
Found at i:8061605 original size:29 final size:29
Alignment explanation
Indices: 8061573--8061848 Score: 247
Period size: 29 Copynumber: 9.5 Consensus size: 29
8061563 ATTCGAGGGT
*
8061573 AAAATGGTAATTTTTAGAAGTTTAGGGGC
1 AAAATGGTAATTTTTGGAAGTTTAGGGGC
* * * *
8061602 AAAAATGG-GATTTTTTGAAGCTTAGGGGT
1 -AAAATGGTAATTTTTGGAAGTTTAGGGGC
* **
8061631 AAAATGGTAATATTTGGAAGTTCGGGGGC
1 AAAATGGTAATTTTTGGAAGTTTAGGGGC
* * *
8061660 AAAATGGTAGTTTTTGGAAGTTCAAGGGC
1 AAAATGGTAATTTTTGGAAGTTTAGGGGC
* * * *
8061689 AAAATGGGATTTTTTGAAAGTTTGGGGGC
1 AAAATGGTAATTTTTGGAAGTTTAGGGGC
* * **
8061718 AAAATGGTAGTTTTTGGAAGTTCAAGGGTA
1 AAAATGGTAATTTTTGGAAGTT-TAGGGGC
* * *
8061748 AAAAT-GTAATTTTTTGAAAGTTTAAGGTC
1 AAAATGGTAA-TTTTTGGAAGTTTAGGGGC
* *
8061777 AAAATGGTAATTTTTGGAAGTTAAAGGGC
1 AAAATGGTAATTTTTGGAAGTTTAGGGGC
*
8061806 AAAAAT-GTAATTTTTGTGAAGTTT-TGGGC
1 -AAAATGGTAATTTTTG-GAAGTTTAGGGGC
8061835 AAAAT-GTAATTTTT
1 AAAATGGTAATTTTT
8061849 ATGAAGTTCG
Statistics
Matches: 202, Mismatches: 38, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
28 21 0.10
29 140 0.69
30 41 0.20
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGAAGTTTAGGGGC
Found at i:8061664 original size:87 final size:84
Alignment explanation
Indices: 8061540--8061856 Score: 289
Period size: 87 Copynumber: 3.6 Consensus size: 84
8061530 AGACATTCGA
* * * *
8061540 GGGTAAAATTGTAATTTTTGGACA-TTCGAGGGTAAAATGGTAATTTTTAGAAGTTTAGGGGCAA
1 GGGTAAAATGGTAATTTTTGGA-AGTTCGGGGGCAAAAT-GTAATTTTTAGAAGTTTAAGGGC-A
8061604 AAATGGGATTTTTTGAAGCTTAG
63 AAATGGGATTTTTTGAAG-TTAG
* * * *
8061627 GGGTAAAATGGTAATATTTGGAAGTTCGGGGGCAAAATGGTAGTTTTTGGAAGTTCAAGGGCAAA
1 GGGTAAAATGGTAATTTTTGGAAGTTCGGGGGCAAAAT-GTAATTTTTAGAAGTTTAAGGGCAAA
*
8061692 ATGGGATTTTTTGAAAGTTTGG
65 ATGGGATTTTTTG-AAG-TTAG
* * * ** * *
8061714 GGGCAAAATGGTAGTTTTTGGAAGTTCAAGGGTAAAAATGTAATTTTTTGAAAGTTTAAGGTCAA
1 GGGTAAAATGGTAATTTTTGGAAGTTC-GGGGGCAAAATGTAATTTTTAG-AAGTTTAAGGGCAA
* *
8061779 AATGGTAATTTTTGGAAGTTAAAG
64 AATGG-GATTTTTTGAAGTT--AG
** **
8061803 GGCAAAAAT-GTAATTTTTGTGAAGTT-TTGGGCAAAATGTAATTTTTATGAAGTT
1 GGGTAAAATGGTAATTTTTG-GAAGTTCGGGGGCAAAATGTAATTTTTA-GAAGTT
8061857 CGGGGGTCAA
Statistics
Matches: 190, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
86 17 0.09
87 114 0.60
88 38 0.20
89 21 0.11
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (84 bp):
GGGTAAAATGGTAATTTTTGGAAGTTCGGGGGCAAAATGTAATTTTTAGAAGTTTAAGGGCAAAA
TGGGATTTTTTGAAGTTAG
Found at i:8061869 original size:58 final size:58
Alignment explanation
Indices: 8061427--8061876 Score: 309
Period size: 58 Copynumber: 7.7 Consensus size: 58
8061417 ACCCGAGGGT
* ** * * * * *
8061427 AAAATGGTAATTTTTGGACA-CTCGGGGGTAAAAATGTAATTTTTGGACA-TCTGGGGGT
1 AAAATGGTAATTTTTGGA-AGTTCAAGGGTCAAAATGTAATTTTTTGA-AGTTTAGGGGC
** * * * * *
8061485 AAAATGGTAATTTTTGGAAACTCGAGAG-CAAAATATGTAATTTTTAGACA--TTCGAGGGT
1 AAAATGGTAATTTTTGGAAGTTCAAGGGTC-AAA-ATGTAATTTTTTGA-AGTTTAG-GGGC
* * *
8061544 AAAATTGTAATTTTTGGACA-TTCGAGGGT-AAAATGGTAATTTTTAGAAGTTTAGGGGC
1 AAAATGGTAATTTTTGGA-AGTTCAAGGGTCAAAAT-GTAATTTTTTGAAGTTTAGGGGC
* * * * * **
8061602 AAAAATGG-GATTTTTTGAAGCTT-AGGGGT-AAAATGGTAATATTTGGAAGTTCGGGGGC
1 -AAAATGGTAATTTTTGGAAG-TTCAAGGGTCAAAAT-GTAATTTTTTGAAGTTTAGGGGC
* ** *
8061660 AAAATGGTAGTTTTTGGAAGTTCAAGGG-CAAAATGGGATTTTTTGAAAGTTTGGGGGC
1 AAAATGGTAATTTTTGGAAGTTCAAGGGTCAAAATGTAATTTTTTG-AAGTTTAGGGGC
* * * *
8061718 AAAATGGTAGTTTTTGGAAGTTCAAGGGTAAAAATGTAATTTTTTGAAAGTTTAAGGTC
1 AAAATGGTAATTTTTGGAAGTTCAAGGGTCAAAATGTAATTTTTTG-AAGTTTAGGGGC
* *
8061777 AAAATGGTAATTTTTGGAAGTTAAAGGG-CAAAAATGTAATTTTTGTGAAGTTT-TGGGC
1 AAAATGGTAATTTTTGGAAGTTCAAGGGTC-AAAATGTAATTTTT-TGAAGTTTAGGGGC
* **
8061835 AAAAT-GTAATTTTTATGAAGTTCGGGGGTCAAAATGT-ATTTT
1 AAAATGGTAATTTTT-GGAAGTTCAAGGGTCAAAATGTAATTTT
8061877 GAAAAAGTTT
Statistics
Matches: 327, Mismatches: 44, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
57 35 0.11
58 165 0.50
59 124 0.38
60 3 0.01
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.35
Consensus pattern (58 bp):
AAAATGGTAATTTTTGGAAGTTCAAGGGTCAAAATGTAATTTTTTGAAGTTTAGGGGC
Found at i:8061876 original size:29 final size:29
Alignment explanation
Indices: 8061485--8061857 Score: 242
Period size: 29 Copynumber: 12.8 Consensus size: 29
8061475 ATCTGGGGGT
* ** * *
8061485 AAAATGGTAATTTTTGGAAACTCGAGAGC
1 AAAATGGTAATTTTTTGAAGTTCAAGGGC
* * * *
8061514 AAAATATGTAATTTTTAGACA-TTCGAGGGT
1 AAAAT-GGTAATTTTTTGA-AGTTCAAGGGC
* * * *
8061544 AAAATTGTAATTTTTGGACA-TTCGAGGGT
1 AAAATGGTAATTTTTTGA-AGTTCAAGGGC
* * *
8061573 AAAATGGTAATTTTTAGAAGTTTAGGGGC
1 AAAATGGTAATTTTTTGAAGTTCAAGGGC
* * *
8061602 AAAAATGG-GATTTTTTGAAGCTT-AGGGGT
1 -AAAATGGTAATTTTTTGAAG-TTCAAGGGC
* * **
8061631 AAAATGGTAATATTTGGAAGTTCGGGGGC
1 AAAATGGTAATTTTTTGAAGTTCAAGGGC
* *
8061660 AAAATGGTAGTTTTTGGAAGTTCAAGGGC
1 AAAATGGTAATTTTTTGAAGTTCAAGGGC
* ***
8061689 AAAATGG-GATTTTTTGAAAGTTTGGGGGC
1 AAAATGGTAATTTTTTG-AAGTTCAAGGGC
* * *
8061718 AAAATGGTAGTTTTTGGAAGTTCAAGGGTA
1 AAAATGGTAATTTTTTGAAGTTCAAGGG-C
* *
8061748 AAAAT-GTAATTTTTTGAAAGTTTAAGGTC
1 AAAATGGTAATTTTTTG-AAGTTCAAGGGC
* *
8061777 AAAATGGTAATTTTTGGAAGTTAAAGGGC
1 AAAATGGTAATTTTTTGAAGTTCAAGGGC
**
8061806 AAAAAT-GTAATTTTTGTGAAGTT-TTGGGC
1 -AAAATGGTAATTTTT-TGAAGTTCAAGGGC
8061835 AAAAT-GTAATTTTTATGAAGTTC
1 AAAATGGTAATTTTT-TGAAGTTC
8061858 GGGGGTCAAA
Statistics
Matches: 280, Mismatches: 49, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
28 37 0.13
29 170 0.61
30 72 0.26
31 1 0.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTTGAAGTTCAAGGGC
Found at i:8061884 original size:29 final size:29
Alignment explanation
Indices: 8061834--8061927 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 29
8061824 AAGTTTTGGG
* **
8061834 CAAAATGTAATTTTTATGAAGTTCGGGGGT
1 CAAAATGTAATTTTGAAAAAGTT-GGGGGT
*
8061864 CAAAATGT-ATTTTGAAAAAGTTTGGGGT
1 CAAAATGTAATTTTGAAAAAGTTGGGGGT
* * * *
8061892 CAAAATATGATTTTTGGAAAATTTGGGGGT
1 CAAAATGT-AATTTTGAAAAAGTTGGGGGT
8061922 CAAAAT
1 CAAAAT
8061928 ATGATTTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 12 0.23
29 11 0.21
30 30 0.57
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (29 bp):
CAAAATGTAATTTTGAAAAAGTTGGGGGT
Found at i:8061921 original size:30 final size:31
Alignment explanation
Indices: 8061852--8061936 Score: 115
Period size: 30 Copynumber: 2.9 Consensus size: 31
8061842 AATTTTTATG
* *
8061852 AAGTTCGGGGGTCAAAATGT-A-TTTTGAAA
1 AAGTTTGGGGGTCAAAATATGATTTTTGAAA
*
8061881 AAGTTT-GGGGTCAAAATATGATTTTTGGAA
1 AAGTTTGGGGGTCAAAATATGATTTTTGAAA
8061911 AA-TTTGGGGGTCAAAATATGATTTTT
1 AAGTTTGGGGGTCAAAATATGATTTTT
8061937 TGGATAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 12 0.24
29 9 0.18
30 29 0.58
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (31 bp):
AAGTTTGGGGGTCAAAATATGATTTTTGAAA
Found at i:8062809 original size:22 final size:22
Alignment explanation
Indices: 8062775--8062816 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
8062765 TTAAATATGC
*
8062775 TTTAAGATTGTTA-TATTTTCA
1 TTTAAAATTGTTATTATTTTCA
8062796 TTTAAAATATGTTATTATTTT
1 TTTAAAAT-TGTTATTATTTT
8062817 TAACATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (22 bp):
TTTAAAATTGTTATTATTTTCA
Found at i:8062988 original size:16 final size:14
Alignment explanation
Indices: 8062962--8063012 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
8062952 CAACTTCTTT
8062962 TATTT-TTATTTAA
1 TATTTATTATTTAA
8062975 TATTAATATTATTTAA
1 TATT--TATTATTTAA
*
8062991 TACTTATTATTTAA
1 TATTTATTATTTAA
*
8063005 TATGTATT
1 TATTTATT
8063013 TATTATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 4 0.12
14 16 0.50
15 1 0.03
16 11 0.34
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (14 bp):
TATTTATTATTTAA
Found at i:8063728 original size:6 final size:6
Alignment explanation
Indices: 8063717--8063790 Score: 64
Period size: 6 Copynumber: 12.5 Consensus size: 6
8063707 GGACTTTTAA
* * *
8063717 TTAAAT TTAAAT TTAAAT TTAAA- ATAAAT TTAAAC TTAAA- AT-AAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
8063762 TTAAAAT TTAAAAT TTAAAA TTAAGT TTA
1 TT-AAAT TT-AAAT TTAAAT TTAAAT TTA
8063791 TTATGAAAGG
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
4 2 0.04
5 6 0.11
6 36 0.64
7 12 0.21
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (6 bp):
TTAAAT
Found at i:8063744 original size:11 final size:12
Alignment explanation
Indices: 8063718--8063750 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
8063708 GACTTTTAAT
*
8063718 TAAATTTAAATT
1 TAAATTTAAATA
8063730 TAAATTTAAA-A
1 TAAATTTAAATA
8063741 TAAATTTAAA
1 TAAATTTAAA
8063751 CTTAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:8063744 original size:17 final size:17
Alignment explanation
Indices: 8063724--8063775 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
8063714 TAATTAAATT
8063724 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
8063741 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
8063758 T-AATTTAAAATTTAAAA
1 TAAATTT-AAATTTAAAA
8063775 T
1 T
8063776 TTAAAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.16
17 27 0.84
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Done.