Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 28 of 125
Found at i:8063771 original size:7 final size:7
Alignment explanation
Indices: 8063719--8063783 Score: 59
Period size: 7 Copynumber: 9.7 Consensus size: 7
8063709 ACTTTTAATT
8063719 AAATTT-
1 AAATTTA
8063725 AAATTT-
1 AAATTTA
8063731 AAATTTA
1 AAATTTA
8063738 AAA--T-
1 AAATTTA
8063742 AAATTTA
1 AAATTTA
* *
8063749 AACTTAAA
1 AAATT-TA
8063757 ATAATTTA
1 A-AATTTA
8063765 AAATTTA
1 AAATTTA
8063772 AAATTTA
1 AAATTTA
8063779 AAATT
1 AAATT
8063784 AAGTTTATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
4 3 0.06
5 1 0.02
6 13 0.27
7 25 0.51
8 4 0.08
9 3 0.06
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTTA
Found at i:8064284 original size:8 final size:8
Alignment explanation
Indices: 8064266--8064305 Score: 71
Period size: 8 Copynumber: 4.9 Consensus size: 8
8064256 AAATAATTTA
8064266 TTTAAATAT
1 TTTAAA-AT
8064275 TTTAAAAT
1 TTTAAAAT
8064283 TTTAAAAT
1 TTTAAAAT
8064291 TTTAAAAT
1 TTTAAAAT
8064299 TTTAAAA
1 TTTAAAA
8064306 ATAAAATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 25 0.81
9 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTTAAAAT
Found at i:8064327 original size:27 final size:28
Alignment explanation
Indices: 8064289--8064362 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 28
8064279 AAATTTTAAA
*
8064289 ATTTTAAAATTTTAAAAATAAAATTAT-
1 ATTTTAATATTTTAAAAATAAAATTATG
*
8064316 ATTTTAATATTTTTAAAATAATAAAATTTTG
1 ATTTTAATA-TTTT-AAA-AATAAAATTATG
*
8064347 A-TTTAATTTTTTAAAA
1 ATTTTAATATTTTAAAA
8064363 TTTATATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 9 0.22
28 7 0.17
29 7 0.17
30 16 0.40
31 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (28 bp):
ATTTTAATATTTTAAAAATAAAATTATG
Found at i:8072003 original size:209 final size:207
Alignment explanation
Indices: 8071629--8072052 Score: 572
Period size: 209 Copynumber: 2.0 Consensus size: 207
8071619 ATTGTTATTG
* * * * *
8071629 CACACATTGGCTAAGTTTGGGATTGTGGTGTCTTATTTTTAATTTAATTCTTTTTACTTAGATCT
1 CACACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCT
*
8071694 AGTTGTTATTACTATTTCAAAGCCTAGTTTGCTCATTGCCTAGTTTGTTATTTTGTTTCTACTTG
66 AGTTGTTATTACTATTTCAAAGCCTAGTTTGCTCATTGCCTAGTTTGTTATTTTGTTGCTACTTG
* *
8071759 TTCTATTTTTAATGATGCAAGATTGTTTAAATTGCTAATATTGGTCCTATTCATATAAGAGA-AC
131 CTCTATTTTTAATGATGCAAGATTGTTTAAATTGCTAATATTGGGCCTA--CATATAAGAGAGA-
*
8071823 ATGTAAGTAATATGT
193 ATGTAAGTAATATAT
* * *
8071838 CACACATTGGCCAAGTTTGGGATTGTTGTATCTTCTATTTAAGTTAATTCTTTTCACTT-TATCT
1 CACACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCT
* * **
8071902 AGTTGTTGTTACTATTTCATAATCC-AGTTTGCTTGTTGCCTAGTTTGTTATGCTTGTTGTTGCT
66 AGTTGTTATTACTATTTCA-AAGCCTAGTTTGCTCATTGCCTAGTTTGTTA---TT-TTGTTGCT
*
8071966 AC-T-CTCTATTTTTAATGATGCAAGATTG-TTAAATTGCTAATATTGGGCCTACATATGAGAGA
126 ACTTGCTCTATTTTTAATGATGCAAGATTGTTTAAATTGCTAATATTGGGCCTACATATAAGAGA
*
8072028 GAGTGTAAGTAATATAT
191 GAATGTAAGTAATATAT
8072045 CACACATT
1 CACACATT
8072053 TGGTAAACTT
Statistics
Matches: 191, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
207 31 0.16
208 46 0.24
209 78 0.41
210 24 0.13
211 3 0.02
212 9 0.05
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (207 bp):
CACACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCT
AGTTGTTATTACTATTTCAAAGCCTAGTTTGCTCATTGCCTAGTTTGTTATTTTGTTGCTACTTG
CTCTATTTTTAATGATGCAAGATTGTTTAAATTGCTAATATTGGGCCTACATATAAGAGAGAATG
TAAGTAATATAT
Found at i:8083564 original size:130 final size:130
Alignment explanation
Indices: 8083331--8083591 Score: 450
Period size: 130 Copynumber: 2.0 Consensus size: 130
8083321 AAGGCAGAGG
* *
8083331 AACAGTAAAACGCACCTGGTCTCTGATACTATGTTAAGTATAAAACCCTAAAATCAATTGCTTAT
1 AACAGTAAAACACACCTGGGCTCTGATACTATGTTAAGTATAAAACCCTAAAATCAATTGCTTAT
* * *
8083396 AGATAGAGGGTATGGGAAACTCAATACTCAATAGATGTGGGGATAACACCACTTAACAAATTCTA
66 AGATAGAGGGGATGCGAAACCCAATACTCAATAGATGTGGGGATAACACCACTTAACAAATTCTA
* * *
8083461 AACAGTAGAACACACTTGGGCTCTGATACTATGTTAAGTATAAAACCCTAAAATCAATTGGTTAT
1 AACAGTAAAACACACCTGGGCTCTGATACTATGTTAAGTATAAAACCCTAAAATCAATTGCTTAT
8083526 AGATAGAGGGGATGCGAAACCCAATACTCAATAGATGTGGGGATAACACCACTTAACAAATTCTA
66 AGATAGAGGGGATGCGAAACCCAATACTCAATAGATGTGGGGATAACACCACTTAACAAATTCTA
8083591 A
1 A
8083592 TTCTAGAGCT
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
130 123 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (130 bp):
AACAGTAAAACACACCTGGGCTCTGATACTATGTTAAGTATAAAACCCTAAAATCAATTGCTTAT
AGATAGAGGGGATGCGAAACCCAATACTCAATAGATGTGGGGATAACACCACTTAACAAATTCTA
Found at i:8086227 original size:34 final size:34
Alignment explanation
Indices: 8086184--8086250 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
8086174 AAAGGCAGGC
**
8086184 AGTCATAGTGCACCAGTTGTGCATTTCTTTTCTG
1 AGTCATAGTGCACCAGTTGCACATTTCTTTTCTG
*
8086218 AGTCATAGTGCACCAGTTGCACGTTTCTTTTCT
1 AGTCATAGTGCACCAGTTGCACATTTCTTTTCT
8086251 CTTGGCATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.40
Consensus pattern (34 bp):
AGTCATAGTGCACCAGTTGCACATTTCTTTTCTG
Found at i:8088126 original size:16 final size:16
Alignment explanation
Indices: 8088102--8088173 Score: 81
Period size: 16 Copynumber: 4.5 Consensus size: 16
8088092 CGTTTGGTTC
*
8088102 GCTGTAATGGAATAGT
1 GCTGTAATGGAATAGG
* *
8088118 GCTGCAATGAAATAGG
1 GCTGTAATGGAATAGG
* *
8088134 GTTGTAATGGAATAAG
1 GCTGTAATGGAATAGG
* *
8088150 ACTGTAATGTAATAGG
1 GCTGTAATGGAATAGG
8088166 GCTGTAAT
1 GCTGTAAT
8088174 CAGTAATTCA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGG
Found at i:8088145 original size:32 final size:32
Alignment explanation
Indices: 8088102--8088173 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
8088092 CGTTTGGTTC
*
8088102 GCTGTAATGGAAT-AGTGCTGCAATGAAATAGG
1 GCTGTAATGGAATAAG-ACTGCAATGAAATAGG
* * *
8088134 GTTGTAATGGAATAAGACTGTAATGTAATAGG
1 GCTGTAATGGAATAAGACTGCAATGAAATAGG
8088166 GCTGTAAT
1 GCTGTAAT
8088174 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 32 0.94
33 2 0.06
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (32 bp):
GCTGTAATGGAATAAGACTGCAATGAAATAGG
Found at i:8088242 original size:44 final size:46
Alignment explanation
Indices: 8088155--8088249 Score: 124
Period size: 44 Copynumber: 2.1 Consensus size: 46
8088145 ATAAGACTGT
* * *
8088155 AATGTAATAGGGCTGTAATCAGTAATTCAGTTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTAGTTGAATGG
*
8088201 AATGGAATAGAGCTGTAA-CAGT-ATT-ATTGTGTTTAGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAGT-TGTTTAGTTGAATGG
8088245 AATGG
1 AATGG
8088250 TGTTGTAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 22 0.50
45 4 0.09
46 16 0.36
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTAGTTGAATGG
Found at i:8088385 original size:26 final size:26
Alignment explanation
Indices: 8088337--8088447 Score: 95
Period size: 26 Copynumber: 4.4 Consensus size: 26
8088327 GTTATTAAAT
* *
8088337 TTTAATAAGATTATTATTAAATATAA
1 TTTAATAAAATTATAATTAAATATAA
* *
8088363 TTTAATAAAAGTATAATTTAATATAA
1 TTTAATAAAATTATAATTAAATATAA
* * * *
8088389 -ATAAT-AAA-TA-ACTTAATTATAT
1 TTTAATAAAATTATAATTAAATATAA
* * *
8088411 TTTAATATAATTATTATTAAATACAA
1 TTTAATAAAATTATAATTAAATATAA
8088437 TTTAATAAAAT
1 TTTAATAAAAT
8088448 AATATATAAT
Statistics
Matches: 64, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
22 8 0.12
23 6 0.09
24 5 0.08
25 6 0.09
26 39 0.61
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TTTAATAAAATTATAATTAAATATAA
Found at i:8088418 original size:58 final size:58
Alignment explanation
Indices: 8088356--8088505 Score: 171
Period size: 58 Copynumber: 2.6 Consensus size: 58
8088346 ATTATTATTA
* *
8088356 AATATAATT-TAATAAAAGTATAATTTAATATAAATAATAAATAACTTAATTATA-TTTT
1 AATATAATTATAATAAAA-TACAATTTAATA-AAATAATAAATAACTTAATAATATTTTT
* * * *
8088414 AATATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTTTT
1 AATATAATTATAATAAAATACAATTTAATAAAATAATAAATAACTTAATAATATTTTT
* *
8088472 AATATAATTATTATTAAAATATGAA-TTAATAAAA
1 AATATAATTA-TAATAAAATA-CAATTTAATAAAA
8088506 ATCATAATAT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
57 20 0.26
58 34 0.44
59 22 0.28
60 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (58 bp):
AATATAATTATAATAAAATACAATTTAATAAAATAATAAATAACTTAATAATATTTTT
Found at i:8088482 original size:74 final size:74
Alignment explanation
Indices: 8088330--8088466 Score: 192
Period size: 74 Copynumber: 1.9 Consensus size: 74
8088320 GATTATTGTT
* * *
8088330 ATTAAATTTTAATAAGATTATTATTAAATATAATTTAATAAAAGTATAATTTAATATAAATAATA
1 ATTATATTTTAATAAGATTATTATTAAATACAATTTAATAAAAGTATAATATAATATAAATAATA
8088395 AATAACTTA
66 AATAACTTA
*
8088404 ATTATATTTTAATATA-ATTATTATTAAATACAATTTAATAAAA-TA-ATATATAAT-TTAATAA
1 ATTATATTTTAATA-AGATTATTATTAAATACAATTTAATAAAAGTATA-ATATAATATAAATAA
8088465 TA
64 TA
8088467 TTTTTAATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
72 9 0.16
73 8 0.14
74 39 0.68
75 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (74 bp):
ATTATATTTTAATAAGATTATTATTAAATACAATTTAATAAAAGTATAATATAATATAAATAATA
AATAACTTA
Found at i:8092245 original size:82 final size:82
Alignment explanation
Indices: 8092095--8092245 Score: 176
Period size: 82 Copynumber: 1.8 Consensus size: 82
8092085 AAGAGCTCGT
** * * ** *
8092095 AGAAAGGATCGCGTGCTTTGTAGGCAACCCAAACACGTGTCCAACAGGCCCGAAGCCCGCTCAGA
1 AGAAAGGATCGCGTGCTCCGCAAGCAACCCAAACACGTGTCCAACAGGCCCGAAGCCCGCAAAAA
8092160 ATGTTATTCCCAATAGC
66 ATGTTATTCCCAATAGC
* * * ** * *
8092177 AGAAAGGATTGCGTGCTCCGCAAGCAACCCAGACATGTGTCCAACAGGCTTGGAGTCCGCAAAAA
1 AGAAAGGATCGCGTGCTCCGCAAGCAACCCAAACACGTGTCCAACAGGCCCGAAGCCCGCAAAAA
8092242 ATGT
66 ATGT
8092246 CAGTATTAGG
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
82 55 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (82 bp):
AGAAAGGATCGCGTGCTCCGCAAGCAACCCAAACACGTGTCCAACAGGCCCGAAGCCCGCAAAAA
ATGTTATTCCCAATAGC
Found at i:8092266 original size:22 final size:22
Alignment explanation
Indices: 8092236--8092281 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8092226 TTGGAGTCCG
* *
8092236 CAAAAAATGTCAGTATTAGGGA
1 CAAAAAATGTCAGTACTAGAGA
*
8092258 CAAAGAATGTCAGTACTAGAGA
1 CAAAAAATGTCAGTACTAGAGA
8092280 CA
1 CA
8092282 GTAGAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (22 bp):
CAAAAAATGTCAGTACTAGAGA
Found at i:8094095 original size:31 final size:31
Alignment explanation
Indices: 8094053--8094115 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
8094043 AAACATTTTT
8094053 ACTTTCCCCCCAAAACTTTTACTCC-CTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCACTCCC
*
8094083 ACTTTCTCCCCCAAAATTTTTACTCCACTCCC
1 ACTTTC-CCCCCAAAACTTTTACTCCACTCCC
8094115 A
1 A
8094116 TCTCACCCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 6 0.20
31 18 0.60
32 6 0.20
ACGTcount: A:0.22, C:0.46, G:0.00, T:0.32
Consensus pattern (31 bp):
ACTTTCCCCCCAAAACTTTTACTCCACTCCC
Found at i:8102833 original size:19 final size:19
Alignment explanation
Indices: 8102809--8102850 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8102799 CAACTAAGTA
* *
8102809 AATAATATCACTTAATTAT
1 AATAATAACACTTAATTAG
*
8102828 AATAATAACTCTTAATTAG
1 AATAATAACACTTAATTAG
8102847 AATA
1 AATA
8102851 TCTAAAAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATAACACTTAATTAG
Found at i:8109102 original size:335 final size:335
Alignment explanation
Indices: 8108492--8109159 Score: 1336
Period size: 335 Copynumber: 2.0 Consensus size: 335
8108482 GTAGATTCTA
8108492 TATTCGACCTTTCGTAAGAGAGATAGTTTTATAGGTATCTTTTCATTTGATCAAAAGTTTAGAAG
1 TATTCGACCTTTCGTAAGAGAGATAGTTTTATAGGTATCTTTTCATTTGATCAAAAGTTTAGAAG
8108557 GAAAATAATTATGGTTAGTAGGAACAATGTAAGATTAATATAACTGAATAACAGAATTTTCCTAC
66 GAAAATAATTATGGTTAGTAGGAACAATGTAAGATTAATATAACTGAATAACAGAATTTTCCTAC
8108622 ACTTTTTCATCTTACATCTTTCATTAAGTCATATCTAAAATGAGTTATAAATGCATCGAGAAAAT
131 ACTTTTTCATCTTACATCTTTCATTAAGTCATATCTAAAATGAGTTATAAATGCATCGAGAAAAT
8108687 TTATTGAAAATTTTAATTTGCAAAGGTTTAACAAAGCTGTGGTGATGATTTATGAACTATCATGG
196 TTATTGAAAATTTTAATTTGCAAAGGTTTAACAAAGCTGTGGTGATGATTTATGAACTATCATGG
8108752 GAAAGCATAAAACACGCAAATCCTTCGGACATAATCTAACTTCTCGAAGAGTAAAGATGCAAAAA
261 GAAAGCATAAAACACGCAAATCCTTCGGACATAATCTAACTTCTCGAAGAGTAAAGATGCAAAAA
8108817 TTCTTGATAG
326 TTCTTGATAG
8108827 TATTCGACCTTTCGTAAGAGAGATAGTTTTATAGGTATCTTTTCATTTGATCAAAAGTTTAGAAG
1 TATTCGACCTTTCGTAAGAGAGATAGTTTTATAGGTATCTTTTCATTTGATCAAAAGTTTAGAAG
8108892 GAAAATAATTATGGTTAGTAGGAACAATGTAAGATTAATATAACTGAATAACAGAATTTTCCTAC
66 GAAAATAATTATGGTTAGTAGGAACAATGTAAGATTAATATAACTGAATAACAGAATTTTCCTAC
8108957 ACTTTTTCATCTTACATCTTTCATTAAGTCATATCTAAAATGAGTTATAAATGCATCGAGAAAAT
131 ACTTTTTCATCTTACATCTTTCATTAAGTCATATCTAAAATGAGTTATAAATGCATCGAGAAAAT
8109022 TTATTGAAAATTTTAATTTGCAAAGGTTTAACAAAGCTGTGGTGATGATTTATGAACTATCATGG
196 TTATTGAAAATTTTAATTTGCAAAGGTTTAACAAAGCTGTGGTGATGATTTATGAACTATCATGG
8109087 GAAAGCATAAAACACGCAAATCCTTCGGACATAATCTAACTTCTCGAAGAGTAAAGATGCAAAAA
261 GAAAGCATAAAACACGCAAATCCTTCGGACATAATCTAACTTCTCGAAGAGTAAAGATGCAAAAA
8109152 TTCTTGAT
326 TTCTTGAT
8109160 CTGTGTCTGT
Statistics
Matches: 333, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
335 333 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (335 bp):
TATTCGACCTTTCGTAAGAGAGATAGTTTTATAGGTATCTTTTCATTTGATCAAAAGTTTAGAAG
GAAAATAATTATGGTTAGTAGGAACAATGTAAGATTAATATAACTGAATAACAGAATTTTCCTAC
ACTTTTTCATCTTACATCTTTCATTAAGTCATATCTAAAATGAGTTATAAATGCATCGAGAAAAT
TTATTGAAAATTTTAATTTGCAAAGGTTTAACAAAGCTGTGGTGATGATTTATGAACTATCATGG
GAAAGCATAAAACACGCAAATCCTTCGGACATAATCTAACTTCTCGAAGAGTAAAGATGCAAAAA
TTCTTGATAG
Found at i:8110149 original size:167 final size:168
Alignment explanation
Indices: 8109847--8110181 Score: 573
Period size: 167 Copynumber: 2.0 Consensus size: 168
8109837 CATAGGCCTA
* * * *
8109847 TCATTCCTAAATTTGAGGCAAATGAAGGCGGTGCTAAATACAAATTTATGATGATTAAGTTTTGG
1 TCATTCCTAAATTTGAGGCAAATGAAGACGGTGCTAAACACAAATTTATAATGATTAAATTTTGG
8109912 ATGTTTTTGGGATCTTTAATACGAATGAGATTGGTAAAAAGTGAATCTTAATGATTAAGTTTGGG
66 ATGTTTTTGGGATCTTTAATACGAATGAGATTGGTAAAAAGTGAATCTTAATGATTAAGTTTGGG
8109977 ATCTCTTAGGGATTCTTTAATATGGTTGAGTTCTCATG
131 ATCTCTTAGGGATTCTTTAATATGGTTGAGTTCTCATG
*
8110015 TCATTCCTAAATTTGAGGCAAATGAAGATGGTGCTAAACACAAATTTATAATGATTAAATTTTGG
1 TCATTCCTAAATTTGAGGCAAATGAAGACGGTGCTAAACACAAATTTATAATGATTAAATTTTGG
* * * *
8110080 AT-TTTTTGGGCTCTTTAATATGAATGAGATTGGTAAGAATTGAATCTTAATGATTAAGTTTGGG
66 ATGTTTTTGGGATCTTTAATACGAATGAGATTGGTAAAAAGTGAATCTTAATGATTAAGTTTGGG
*
8110144 ATCTCTTGGGGATTCTTTAATATGGTTGAGTTCTCATG
131 ATCTCTTAGGGATTCTTTAATATGGTTGAGTTCTCATG
8110182 ATCCATTCTG
Statistics
Matches: 157, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
167 95 0.61
168 62 0.39
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (168 bp):
TCATTCCTAAATTTGAGGCAAATGAAGACGGTGCTAAACACAAATTTATAATGATTAAATTTTGG
ATGTTTTTGGGATCTTTAATACGAATGAGATTGGTAAAAAGTGAATCTTAATGATTAAGTTTGGG
ATCTCTTAGGGATTCTTTAATATGGTTGAGTTCTCATG
Found at i:8111041 original size:254 final size:254
Alignment explanation
Indices: 8110590--8111059 Score: 845
Period size: 254 Copynumber: 1.9 Consensus size: 254
8110580 TCTTAGATTG
*
8110590 ATTATGTCTCTGCAAGATTGATGGTCGGTAGAGTAGCAATCTTGGATTGACTATGACAAAAAGAG
1 ATTATGTCTCTGCAAGATTGATGGTCGGTAGAGCAGCAATCTTGGATTGACTATGACAAAAAGAG
*
8110655 CGCGAACAATTGATGGTAATAAGGTGGATTTTCTACTGAGAGTGTTATGATGAGGGGCTTTTCTG
66 CACGAACAATTGATGGTAATAAGGTGGATTTTCTACTGAGAGTGTTATGATGAGGGGCTTTTCTG
8110720 AATTACAGCAGCGAAGAAGTGAATGGAGAATATTGTGATATTTCAGAATATGTGAATTGTAATGT
131 AATTACAGCAGCGAAGAAGTGAATGGAGAATATTGTGATATTTCAGAATATGTGAATTGTAATGT
8110785 AGTATCCATTGGGCAAGGTCCTTAAGATTGATGATGACAAAAACTCCTAAGATTACCTT
196 AGTATCCATTGGGCAAGGTCCTTAAGATTGATGATGACAAAAACTCCTAAGATTACCTT
*
8110844 ATTATGTCTCTGCAAGATTGATGGTTGGTAGAGCAGCAATCTTGGATTGACTATGACAAAAAGAG
1 ATTATGTCTCTGCAAGATTGATGGTCGGTAGAGCAGCAATCTTGGATTGACTATGACAAAAAGAG
*
8110909 CACGAACAATTGATGGTAATAAGGTGGATTTTCTACTGAGAGTGTTGTGATG-GGGAGCTTTTCT
66 CACGAACAATTGATGGTAATAAGGTGGATTTTCTACTGAGAGTGTTATGATGAGGG-GCTTTTCT
* * *
8110973 GAGTTACAGCAGTGAAGAAGTGAATGGAGAATATTGTGAT-TTTGCAGAATATGTGAATTGTGAT
130 GAATTACAGCAGCGAAGAAGTGAATGGAGAATATTGTGATATTT-CAGAATATGTGAATTGTAAT
8111037 GTAGTATCCATTGGGCAAGGTCC
194 GTAGTATCCATTGGGCAAGGTCC
8111060 CTCAACCAAC
Statistics
Matches: 207, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
253 6 0.03
254 201 0.97
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (254 bp):
ATTATGTCTCTGCAAGATTGATGGTCGGTAGAGCAGCAATCTTGGATTGACTATGACAAAAAGAG
CACGAACAATTGATGGTAATAAGGTGGATTTTCTACTGAGAGTGTTATGATGAGGGGCTTTTCTG
AATTACAGCAGCGAAGAAGTGAATGGAGAATATTGTGATATTTCAGAATATGTGAATTGTAATGT
AGTATCCATTGGGCAAGGTCCTTAAGATTGATGATGACAAAAACTCCTAAGATTACCTT
Found at i:8118425 original size:164 final size:163
Alignment explanation
Indices: 8117989--8118463 Score: 799
Period size: 163 Copynumber: 2.9 Consensus size: 163
8117979 GACTCTTTTT
* * *
8117989 TACACTCCTCCTCAAGCTGGGGTTTATATGTTATACATTCCCAGCTTGGAGTTGAA-TCATCGAA
1 TACACTCCCCCTCAAGCT-GGGTGTATATGTTATACATTCCCAGATTGGAGTTGAATTCATCGAA
* * *
8118053 GTTGATTCTTGGAAAAACTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCA
65 GCTGATTCTTGGAAGAGCTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCA
* *
8118118 GTTGGACTATTCCATTGTTTGGGTGTATATGTTA
130 GTTGGACTATTCCATTGTTGGGGTGGATATGTTA
*
8118152 TACACTCCCCCTCAAGCTGGGTGTATATGTTATGCATTCCCAGATTGGAGTTGAATTCATCGAAG
1 TACACTCCCCCTCAAGCTGGGTGTATATGTTATACATTCCCAGATTGGAGTTGAATTCATCGAAG
8118217 CTGATTCTTGGAAGAGCTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCAG
66 CTGATTCTTGGAAGAGCTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCAG
8118282 TTGGACTATTCCATTGTTGGGGTGGATATGTTA
131 TTGGACTATTCCATTGTTGGGGTGGATATGTTA
* *
8118315 TACACTCCCCCTCCAGCTGAGGTGTATATGTTATACATTCCCGGATTGGAGTTGAATTCATCGAA
1 TACACTCCCCCTCAAGCTG-GGTGTATATGTTATACATTCCCAGATTGGAGTTGAATTCATCGAA
* **
8118380 GCTGATTCTTGGAAGAGTTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTACAGATGTAGCTCA
65 GCTGATTCTTGGAAGAGCTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCA
8118445 GTTGGACTATTCCATTGTT
130 GTTGGACTATTCCATTGTT
8118464 AACCTTCTCT
Statistics
Matches: 295, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
162 34 0.12
163 137 0.46
164 124 0.42
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (163 bp):
TACACTCCCCCTCAAGCTGGGTGTATATGTTATACATTCCCAGATTGGAGTTGAATTCATCGAAG
CTGATTCTTGGAAGAGCTTTGGTGAGAATGTCAGCAAGTTGCAGCTGAGTAGGGATGTAGCTCAG
TTGGACTATTCCATTGTTGGGGTGGATATGTTA
Found at i:8119431 original size:97 final size:97
Alignment explanation
Indices: 8119265--8119444 Score: 279
Period size: 97 Copynumber: 1.9 Consensus size: 97
8119255 TATAACAATC
* * * *
8119265 CCTATTCTTTTTTTGTTGCTATTATTTAAACCAACTGTTCTATAATAACACCATAGAAAGATCAA
1 CCTATTCTTGTGTTGTTGCTATTATTTAAACCAACTGTTCTATAACAACACAATAGAAAGATCAA
*
8119330 TAGAAGAACGAAGTAAAACTCTTTTTATTTTT
66 TAGAACAACGAAGTAAAACTCTTTTTATTTTT
* * *
8119362 CCTATTCTTGTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAA
1 CCTATTCTTGTGTTGTTGCTATTATTTAAACCAACTGTTCTATAACAACACAATAGAAAGATCAA
*
8119427 TAGAACAATGAAGTAAAA
66 TAGAACAACGAAGTAAAA
8119445 ATTCTTTGTG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
97 74 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (97 bp):
CCTATTCTTGTGTTGTTGCTATTATTTAAACCAACTGTTCTATAACAACACAATAGAAAGATCAA
TAGAACAACGAAGTAAAACTCTTTTTATTTTT
Found at i:8119627 original size:142 final size:142
Alignment explanation
Indices: 8119371--8119661 Score: 582
Period size: 142 Copynumber: 2.0 Consensus size: 142
8119361 TCCTATTCTT
8119371 GTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAATAGAACAAT
1 GTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAATAGAACAAT
8119436 GAAGTAAAAATTCTTTGTGGTTTTACTTTCATAGTTTCTGTCTTTTACCTCTTTTAGAGTTGGCT
66 GAAGTAAAAATTCTTTGTGGTTTTACTTTCATAGTTTCTGTCTTTTACCTCTTTTAGAGTTGGCT
8119501 TTGCGTAACGAA
131 TTGCGTAACGAA
8119513 GTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAATAGAACAAT
1 GTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAATAGAACAAT
8119578 GAAGTAAAAATTCTTTGTGGTTTTACTTTCATAGTTTCTGTCTTTTACCTCTTTTAGAGTTGGCT
66 GAAGTAAAAATTCTTTGTGGTTTTACTTTCATAGTTTCTGTCTTTTACCTCTTTTAGAGTTGGCT
8119643 TTGCGTAACGAA
131 TTGCGTAACGAA
8119655 GTGTTGT
1 GTGTTGT
8119662 CATGGGCGTA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 149 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (142 bp):
GTGTTGTTGCTATTATTTACACCAACTGTTCTATCACAACACAATAGAAAGGTCAATAGAACAAT
GAAGTAAAAATTCTTTGTGGTTTTACTTTCATAGTTTCTGTCTTTTACCTCTTTTAGAGTTGGCT
TTGCGTAACGAA
Found at i:8120914 original size:2 final size:2
Alignment explanation
Indices: 8120909--8120938 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8120899 TATATATATA
8120909 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8120939 CCTGCTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8143803 original size:201 final size:201
Alignment explanation
Indices: 8143449--8144164 Score: 1026
Period size: 201 Copynumber: 3.6 Consensus size: 201
8143439 CCAAAACATT
* * * * * * * *
8143449 GAGGCGGTCGTCTTCCTGATTAGATACAGAGAAGTATACCAACTC-AACGCTTAATGCGAGTAAA
1 GAGGCAGTCATCTTCCTGATGAGGTACAGAGAAGAATACCAACTCAAACGCTCAACGCGAGCAAA
* *
8143513 TTTTCGAACCCAGCTTCCTGATAAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTC
66 TCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTC
8143578 CTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAA
131 CTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAA
8143643 ACAAGC
196 ACAAGC
8143649 GAGGCAGTCATCTTCCTGATGAGGTAC-GAAGAAGAATACCAACTCAAACGCTCAACGCGAGCAA
1 GAGGCAGTCATCTTCCTGATGAGGTACAG-AGAAGAATACCAACTCAAACGCTCAACGCGAGCAA
* * *
8143713 ATCTTCAAACCTAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGTAATAAAATGGTTAGCTT
65 ATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTT
*
8143778 CCTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCTAGAGAAGCGAATTAA
130 CCTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAA
*
8143843 AACAAGT
195 AACAAGC
* * * * **
8143850 GAGGCGGTCATCTTCCTGATAAGGTAC-GAAGTAGAATACCAACTCAAATGCTCAACAAGAGCAA
1 GAGGCAGTCATCTTCCTGATGAGGTACAG-AGAAGAATACCAACTCAAACGCTCAACGCGAGCAA
* **
8143914 ATCTTCGAACCCAGCTTCCTAATGAGACACTGAGAAGCAGGTTAAAGCAATAAAATGGTTAGCTT
65 ATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTT
* * * *
8143979 CCTGATGAGATATAGAGAAGTGGACCAGATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAA
130 CCTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAA
*
8144044 AACAATC
195 AACAAGC
* * * * *
8144051 GAGGCAGTCATCTTTCTGATGA-GAACAGAGAAGAAGACCAAATCAAACCAACGCTCAATGCGAG
1 GAGGCAGTCATCTTCCTGATGAGGTACAGAGAAGAATACCAACTC--A--AACGCTCAACGCGAG
* *
8144115 CAAATCTTCGAACTCAGCTTCCTGATGAGACACTAAGAAGCAGGTCGAAG
62 CAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAG
8144165 TCAACGAAAC
Statistics
Matches: 459, Mismatches: 50, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
199 1 0.00
200 54 0.12
201 347 0.76
202 1 0.00
204 56 0.12
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (201 bp):
GAGGCAGTCATCTTCCTGATGAGGTACAGAGAAGAATACCAACTCAAACGCTCAACGCGAGCAAA
TCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTC
CTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAA
ACAAGC
Found at i:8144537 original size:18 final size:17
Alignment explanation
Indices: 8144516--8144613 Score: 97
Period size: 18 Copynumber: 5.5 Consensus size: 17
8144506 TTAAACTCAT
*
8144516 TTTAAGATTTATTTTAAG
1 TTTAA-ATTTATTTTAAA
* *
8144534 TTTAAATTGATTTTTGAA
1 TTTAAATTTA-TTTTAAA
*
8144552 TTTAAATTTATTTCAAA
1 TTTAAATTTATTTTAAA
*
8144569 TTTAAATTTTGTTTTAAAA
1 TTTAAA-TTTATTTT-AAA
*
8144588 TTTAAATTTAATTTAAA
1 TTTAAATTTATTTTAAA
*
8144605 TTTAGATTT
1 TTTAAATTT
8144614 GTATATGAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
17 26 0.39
18 31 0.47
19 9 0.14
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:8144561 original size:6 final size:6
Alignment explanation
Indices: 8144550--8144613 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
8144540 TTGATTTTTG
* **
8144550 AATTTA AATTT- -ATTTCA AATTTA AATTTT GTTTTAA AATTTA AATTT-
1 AATTTA AATTTA AATTT-A AATTTA AATTTA AATTT-A AATTTA AATTTA
*
8144597 AATTTA AATTTA GATTT
1 AATTTA AATTTA AATTT
8144614 GTATATGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
4 4 0.09
5 5 0.11
6 30 0.65
7 7 0.15
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (6 bp):
AATTTA
Found at i:8145384 original size:12 final size:12
Alignment explanation
Indices: 8145362--8145391 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
8145352 AATAGCAGTT
8145362 ATAAGTTTTAATA
1 ATAA-TTTTAATA
8145375 ATAATTTTAATA
1 ATAATTTTAATA
8145387 ATAAT
1 ATAAT
8145392 AATATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
ATAATTTTAATA
Found at i:8145390 original size:15 final size:17
Alignment explanation
Indices: 8145370--8145404 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
8145360 TTATAAGTTT
8145370 TAATAATAATTTTAATAA
1 TAATAAT-ATTTTAATAA
8145388 TAATAATATTTTAATAA
1 TAATAATATTTTAATAA
8145405 AAAAAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATAATATTTTAATAA
Found at i:8146511 original size:29 final size:30
Alignment explanation
Indices: 8146470--8146630 Score: 127
Period size: 29 Copynumber: 5.4 Consensus size: 30
8146460 GAAATCCCTA
* *
8146470 AACTATCCAAAAATTGTATTTGGACCCTCG
1 AACTTTCCAAAAATTGTATTTTGACCCTCG
** * *
8146500 AACTTTCC-AAAATTACATTTTTACCC-CTA
1 AACTTTCCAAAAATTGTATTTTGACCCTC-G
* * *
8146529 AACTGTCCAAAAAATTGTATTTGGACCCCCG
1 AACTTTCC-AAAAATTGTATTTTGACCCTCG
*
8146560 AACTTTCC-AAAATTTTATTTTTGA-CCTCG
1 AACTTTCCAAAAATTGTA-TTTTGACCCTCG
* *
8146589 -ATTTTACCAAAAATT-TCATTTTTACCCTCG
1 AACTTT-CCAAAAATTGT-ATTTTGACCCTCG
8146619 AACTTTCCAAAA
1 AACTTTCCAAAA
8146631 TTAAGTTTTT
Statistics
Matches: 102, Mismatches: 19, Indels: 20
0.72 0.13 0.14
Matches are distributed among these distances:
28 5 0.05
29 41 0.40
30 30 0.29
31 25 0.25
32 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.35
Consensus pattern (30 bp):
AACTTTCCAAAAATTGTATTTTGACCCTCG
Found at i:8146599 original size:60 final size:58
Alignment explanation
Indices: 8146476--8146796 Score: 285
Period size: 59 Copynumber: 5.4 Consensus size: 58
8146466 CCTAAACTAT
* * * * ** * *
8146476 CCAAAAATTGTATTTGGACCCTCGAACTTTCCAAAATTACATTTTT-ACCCCTAAACTGT-
1 CCAAAAATTCTATTT-TACCCCCGAACTTTCCAAAATTCCATTTTTGA--CCTCGATTTTA
* * **
8146535 CCAAAAAATTGTATTTGGACCCCCGAACTTTCCAAAATTTTATTTTTGACCTCGATTTTA
1 CC-AAAAATTCTATTT-TACCCCCGAACTTTCCAAAATTCCATTTTTGACCTCGATTTTA
* *
8146595 CCAAAAATT-TCATTTTTACCCTCGAACTTTCCAAAATT-AAGTTTTTGATCC-CGATTTTA
1 CCAAAAATTCT-A-TTTTACCCCCGAACTTTCCAAAATTCCA-TTTTTGA-CCTCGATTTTA
* * * *
8146654 CCAAAAATTACTATTTTACCCCCAAACTTTTCAAAACTCCATTTTTGACCTCAATTTTA
1 CCAAAAATT-CTATTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCTCGATTTTA
* * * *
8146713 CCCAAAATTACCATTTTACCCCCTAACTTTCCAAAATTCCATTTTTGACATCGATTTTA
1 CCAAAAATT-CTATTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCTCGATTTTA
*
8146772 -CAAAAATTACCATTTTACCCCCGAA
1 CCAAAAATT-CTATTTTACCCCCGAA
8146797 AGTTTAAAAT
Statistics
Matches: 226, Mismatches: 25, Indels: 23
0.82 0.09 0.08
Matches are distributed among these distances:
58 27 0.12
59 147 0.65
60 50 0.22
61 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (58 bp):
CCAAAAATTCTATTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCTCGATTTTA
Found at i:8146650 original size:59 final size:59
Alignment explanation
Indices: 8146553--8146796 Score: 300
Period size: 59 Copynumber: 4.2 Consensus size: 59
8146543 TTGTATTTGG
* * *
8146553 ACCCCCGAACTTTCCAAAATTTTATTTTTGACCTCGATTTTACCAAAAATT-TCATTTTT
1 ACCCCCGAACTTTCCAAAACTTCATTTTTGACCTCGATTTTACCAAAAATTACCA-TTTT
* * *
8146612 ACCCTCGAACTTTCCAAAA-TTAAGTTTTTGATCC-CGATTTTACCAAAAATTACTATTTT
1 ACCCCCGAACTTTCCAAAACTTCA-TTTTTGA-CCTCGATTTTACCAAAAATTACCATTTT
* * * * *
8146671 ACCCCCAAACTTTTCAAAACTCCATTTTTGACCTCAATTTTACCCAAAATTACCATTTT
1 ACCCCCGAACTTTCCAAAACTTCATTTTTGACCTCGATTTTACCAAAAATTACCATTTT
* *
8146730 ACCCCCTAACTTTCCAAAA-TTCCATTTTTGACATCGATTTTA-CAAAAATTACCATTTT
1 ACCCCCGAACTTTCCAAAACTT-CATTTTTGACCTCGATTTTACCAAAAATTACCATTTT
8146788 ACCCCCGAA
1 ACCCCCGAA
8146797 AGTTTAAAAT
Statistics
Matches: 160, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
58 29 0.18
59 126 0.79
60 5 0.03
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (59 bp):
ACCCCCGAACTTTCCAAAACTTCATTTTTGACCTCGATTTTACCAAAAATTACCATTTT
Found at i:8146663 original size:30 final size:29
Alignment explanation
Indices: 8146566--8146663 Score: 87
Period size: 30 Copynumber: 3.3 Consensus size: 29
8146556 CCCGAACTTT
* *
8146566 CCAAAATTTTATTTTTGACCTCGATTTTA
1 CCAAAAATTAATTTTTGACCTCGATTTTA
* *
8146595 CCAAAAATTTCATTTTT-ACCCTCGAACTTT-
1 CCAAAAA-TTAATTTTTGA-CCTCG-ATTTTA
8146625 CC-AAAATTAAGTTTTTGATCC-CGATTTTA
1 CCAAAAATTAA-TTTTTGA-CCTCGATTTTA
8146654 CCAAAAATTA
1 CCAAAAATTA
8146664 CTATTTTACC
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
28 7 0.12
29 20 0.36
30 25 0.45
31 4 0.07
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (29 bp):
CCAAAAATTAATTTTTGACCTCGATTTTA
Found at i:8146699 original size:29 final size:28
Alignment explanation
Indices: 8146667--8146758 Score: 73
Period size: 29 Copynumber: 3.1 Consensus size: 28
8146657 AAAATTACTA
*
8146667 TTTTACCCCCAAACTTTTCAAAACTCCAT
1 TTTTACCCCC-AACTTTTCAAAATTCCAT
*
8146696 TTTTGA-CCTCAA-TTTTACCCAAAATTACCA-
1 TTTT-ACCCCCAACTTTT---CAAAATT-CCAT
*
8146726 TTTTACCCCCTAACTTTCCAAAATTCCAT
1 TTTTACCCCC-AACTTTTCAAAATTCCAT
8146755 TTTT
1 TTTT
8146759 GACATCGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
27 4 0.08
28 5 0.10
29 19 0.38
30 14 0.28
31 5 0.10
32 3 0.06
ACGTcount: A:0.29, C:0.30, G:0.01, T:0.39
Consensus pattern (28 bp):
TTTTACCCCCAACTTTTCAAAATTCCAT
Found at i:8148479 original size:17 final size:17
Alignment explanation
Indices: 8148459--8148519 Score: 79
Period size: 17 Copynumber: 3.5 Consensus size: 17
8148449 CACATTCCCT
8148459 TTGTCATTGCATTTTAA
1 TTGTCATTGCATTTTAA
*
8148476 TTGTCACTGCA-TTTACA
1 TTGTCATTGCATTTTA-A
*
8148493 TTGTCATTGCATTTTCAT
1 TTGTCATTGCATTTT-AA
8148511 TTGTCATTG
1 TTGTCATTG
8148520 TAAATTAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
16 4 0.11
17 21 0.55
18 12 0.32
19 1 0.03
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (17 bp):
TTGTCATTGCATTTTAA
Found at i:8148481 original size:34 final size:34
Alignment explanation
Indices: 8148437--8148516 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
8148427 GTAGCTGTAA
* * *
8148437 TTTAACTGTCACCACATTCCCTTTGTCATTGCAT
1 TTTAATTGTCACCACATTCACATTGTCATTGCAT
** *
8148471 TTTAATTGTCACTGCATTTACATTGTCATTGCAT
1 TTTAATTGTCACCACATTCACATTGTCATTGCAT
*
8148505 TTTCATTTGTCA
1 TTT-AATTGTCA
8148517 TTGTAAATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 31 0.82
35 7 0.18
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.46
Consensus pattern (34 bp):
TTTAATTGTCACCACATTCACATTGTCATTGCAT
Found at i:8148532 original size:34 final size:34
Alignment explanation
Indices: 8148459--8148539 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 34
8148449 CACATTCCCT
* *
8148459 TTGTCATTGCATTTTAATTGTCACTGCATTTACA
1 TTGTCATTGCATTTTAATTGTCACTGAAATTACA
* *
8148493 TTGTCATTGCATTTTCATTTGTCATTGTAAATTA-A
1 TTGTCATTGCATTTT-AATTGTCACTG-AAATTACA
*
8148528 -TGTCAGTGCATT
1 TTGTCATTGCATT
8148540 GGGGACAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 26 0.65
35 10 0.25
36 4 0.10
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (34 bp):
TTGTCATTGCATTTTAATTGTCACTGAAATTACA
Found at i:8152775 original size:20 final size:19
Alignment explanation
Indices: 8152746--8152790 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
8152736 ATTAGATTGT
8152746 AAAAATTAAATTAAAAACA
1 AAAAATTAAATTAAAAACA
* *
8152765 AAAATATTAAATTTAAAATA
1 AAAA-ATTAAATTAAAAACA
8152785 AAAAAT
1 AAAAAT
8152791 GGCTAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAAATTAAATTAAAAACA
Found at i:8157971 original size:34 final size:34
Alignment explanation
Indices: 8157926--8158027 Score: 186
Period size: 34 Copynumber: 3.0 Consensus size: 34
8157916 ATTTTATTTC
*
8157926 ATCCGCATTGTTGTGGATGTCACATGATTTTATG
1 ATCCACATTGTTGTGGATGTCACATGATTTTATG
8157960 ATCCACATTGTTGTGGATGTCACATGATTTTATG
1 ATCCACATTGTTGTGGATGTCACATGATTTTATG
*
8157994 ATCCACATTGTTGTGGATATCACATGATTTTATG
1 ATCCACATTGTTGTGGATGTCACATGATTTTATG
8158028 TGCATGCTTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41
Consensus pattern (34 bp):
ATCCACATTGTTGTGGATGTCACATGATTTTATG
Found at i:8157983 original size:17 final size:17
Alignment explanation
Indices: 8157931--8158018 Score: 53
Period size: 17 Copynumber: 5.2 Consensus size: 17
8157921 ATTTCATCCG
8157931 CATTGTTGTGGATGTCA
1 CATTGTTGTGGATGTCA
*
8157948 CA-TGATT-T-TATGATCCA
1 CATTG-TTGTGGATG-T-CA
8157965 CATTGTTGTGGATGTCA
1 CATTGTTGTGGATGTCA
*
8157982 CA-TGATT-T-TATGATCCA
1 CATTG-TTGTGGATG-T-CA
*
8157999 CATTGTTGTGGATATCA
1 CATTGTTGTGGATGTCA
8158016 CAT
1 CAT
8158019 GATTTTATGT
Statistics
Matches: 54, Mismatches: 5, Indels: 24
0.65 0.06 0.29
Matches are distributed among these distances:
15 6 0.11
16 8 0.15
17 27 0.50
18 8 0.15
19 5 0.09
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (17 bp):
CATTGTTGTGGATGTCA
Found at i:8158449 original size:37 final size:37
Alignment explanation
Indices: 8158407--8158480 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
8158397 TATCATTTCA
*
8158407 ATAAAA-ATTACATTTAATTTTTATATAAATTTATTAC
1 ATAAAATATTAC-TATAATTTTTATATAAATTTATTAC
* * *
8158444 ATAAAATTTTTCTATCATTTTTATATAAATTTATTAC
1 ATAAAATATTACTATAATTTTTATATAAATTTATTAC
8158481 TTTCATGTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 29 0.91
38 3 0.09
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (37 bp):
ATAAAATATTACTATAATTTTTATATAAATTTATTAC
Found at i:8160449 original size:25 final size:24
Alignment explanation
Indices: 8160401--8160451 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
8160391 GAGCAAGCCC
* *
8160401 ATTTTCACACTCGTGTGAGCATTT
1 ATTTTCACACTCGCGTGAGAATTT
*
8160425 ATTTTCACATCTCGCGTGATAATTT
1 ATTTTCACA-CTCGCGTGAGAATTT
8160450 AT
1 AT
8160452 GTCCGAAGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.43
Consensus pattern (24 bp):
ATTTTCACACTCGCGTGAGAATTT
Found at i:8165201 original size:30 final size:30
Alignment explanation
Indices: 8164961--8165192 Score: 227
Period size: 30 Copynumber: 7.7 Consensus size: 30
8164951 CATTAAAATC
* * *
8164961 GGGTCAATTTTGAATTTTTGAAAACTTTAAG
1 GGGTCAAATTTGAATTTTTGGAAAGTTT-AG
** *
8164992 GGGTCAAATCAGAATGTTTGGAAAGTTTA-
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
** * *
8165021 GGCACAAATTGGAATTTTTGGAAAATTTTAG
1 GGGTCAAATTTGAATTTTTGG-AAAGTTTAG
* ** *
8165052 GGGTTAAATTTGAATTCCTAGAAAGTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
* * * *
8165082 GGGTTAAATTT-ATTTTTTTTGAAAATTTA-
1 GGGTCAAATTTGA-ATTTTTGGAAAGTTTAG
*
8165111 GGGTCAAATTTAAATTTTTGGAAAGTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
* *
8165141 AGGTCAAATTTGAATTTTTGGAAAGTTTGG
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
8165171 GGGTCAAATTTGAATTTTTGGA
1 GGGTCAAATTTGAATTTTTGGA
8165193 TAATTTGGGA
Statistics
Matches: 163, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
29 40 0.25
30 87 0.53
31 36 0.22
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTGGAAAGTTTAG
Found at i:8166402 original size:16 final size:16
Alignment explanation
Indices: 8166372--8166416 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
8166362 GCGTTTGTAT
8166372 TTTATTT-TTTAATTT-
1 TTTATTTATTT-ATTTG
8166387 TATTATTTATTTATTTG
1 T-TTATTTATTTATTTG
8166404 TTTATTTATTTAT
1 TTTATTTATTTAT
8166417 AAAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.04
16 22 0.81
17 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTATTTATTTATTTG
Found at i:8175454 original size:74 final size:74
Alignment explanation
Indices: 8175353--8175834 Score: 487
Period size: 74 Copynumber: 6.5 Consensus size: 74
8175343 CAAGGCCGAC
* * * *
8175353 CTTTAAAAAAGTTGGGATAGGTC-TTGTCTAAGACAACCTTTTAAAAAAGGTTGGGATAGACCCG
1 CTTTAAAAAGGTTGGGATA-GACATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAACCCG
*
8175417 TCTAAGGCAA
65 TCTAAGACAA
* * *
8175427 CTTTAAAAAGGTTGGAATAGACATTGTCTAAGGCAACCTTTTAAAAAAAGTTGAGATAAACCCGT
1 CTTTAAAAAGGTTGGGATAGACATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAACCCGT
*
8175492 CTAAAACAA
66 CTAAGACAA
* * * * * *
8175501 CCTTAGAAAA-GTTGGGATAGATATTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCTG
1 CTTTA-AAAAGGTTGGGATAGACATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAACCCG
8175565 TCTAAGACAA
65 TCTAAGACAA
* * * * * *
8175575 CCTTAAAAA-GTTGGGATAGGTC-TTGTCTAAGACAACTTTTTAAAAAAGGTTAGGATAGACTCC
1 CTTTAAAAAGGTTGGGATA-GACATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAAC-CC
8175638 -TCTAAGACAA
64 GTCTAAGACAA
* ** * * * * * **
8175648 CCTTAAAAAGGTCAGGATAGACCTTTTCTAA-AGCAATCTTTTATAATAAGTTGGGATAAACTAG
1 CTTTAAAAAGGTTGGGATAGACATTGTCTAAGA-CAACCTTTTAAAAAAAGTTGGGATAAACCCG
*
8175712 TCTAAGGCAA
65 TCTAAGACAA
* * *
8175722 CTTTAAAAAGGTTGGGATA-AGCATTGTCCAAGACAACC-TTTAAAAAAAGTTAGGATAAACCCA
1 CTTTAAAAAGGTTGGGATAGA-CATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAACCCG
*
8175785 TCTAAGGCAA
65 TCTAAGACAA
* * *
8175795 -TCTTAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACCTT
1 CT-TTAAAAAGGTTGGGATAGACATTGTCTAAGACAACCTT
8175835 AAAAAAGTTG
Statistics
Matches: 340, Mismatches: 55, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
72 1 0.00
73 131 0.39
74 203 0.60
75 5 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (74 bp):
CTTTAAAAAGGTTGGGATAGACATTGTCTAAGACAACCTTTTAAAAAAAGTTGGGATAAACCCGT
CTAAGACAA
Found at i:8175678 original size:147 final size:146
Alignment explanation
Indices: 8175355--8175840 Score: 554
Period size: 147 Copynumber: 3.3 Consensus size: 146
8175345 AGGCCGACCT
* ** * * * *
8175355 TTAAAAAAGTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAGGTTGGGATAGACCCGTCT
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCTGTCT
* *
8175420 AAGGCAACTTTAAAAAGGTTGGAATAGACATTGTCTAAGGCAACCTTTTAAAAAAAGTT-GAGAT
66 AAGGCAACTTTAAAAAGGTTGGGATAG-CATTGTCTAAGACAA-CTTTTAAAAAAAGTTAG-GAT
* *
8175484 AAACCCGTCTAAAACAACC
128 AAACCCATCTAAGACAACC
**
8175503 TTAGAAAA-GTTGGGATAGATATTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCTGTC
1 TTA-AAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCTGTC
* * *
8175567 TAAGACAACCTTAAAAA-GTTGGGATAGGTC-TTGTCTAAGACAACTTTTTAAAAAAGGTTAGGA
65 TAAGGCAACTTTAAAAAGGTTGGGATA-G-CATTGTCTAAGACAAC-TTTTAAAAAAAGTTAGGA
*
8175630 TAGACTCC-TCTAAGACAACC
127 TAAAC-CCATCTAAGACAACC
** * * * * * * *
8175650 TTAAAAAGGTCAGGATAGACCTTTTCTAAAGCAATCTTTTATAATAAGTTGGGATA-AACTAGTC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCT-GTC
* *
8175714 TAAGGCAACTTTAAAAAGGTTGGGATAAGCATTGTCCAAGACAACCTTTAAAAAAAGTTAGGATA
65 TAAGGCAACTTTAAAAAGGTTGGGAT-AGCATTGTCTAAGACAACTTTTAAAAAAAGTTAGGATA
* *
8175779 AACCCATCTAAGGCAATC
129 AACCCATCTAAGACAACC
*
8175797 TTAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACC-TTAAAAAA
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAA
8175841 GTTGAAATAG
Statistics
Matches: 285, Mismatches: 42, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
146 15 0.05
147 170 0.60
148 95 0.33
149 5 0.02
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (146 bp):
TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAAGTTGGGATAGACCTGTCT
AAGGCAACTTTAAAAAGGTTGGGATAGCATTGTCTAAGACAACTTTTAAAAAAAGTTAGGATAAA
CCCATCTAAGACAACC
Found at i:8175761 original size:221 final size:220
Alignment explanation
Indices: 8175358--8175841 Score: 602
Period size: 221 Copynumber: 2.2 Consensus size: 220
8175348 CCGACCTTTA
*
8175358 AAAAAGTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAGGTTGGGATAGACCCGTCTAAG
1 AAAAAGTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAGGTTAGGATAGACCCGTCTAAG
* * * *
8175423 GCAACTTTAAAAAGGTTGGAATAGACATTGTCTAAGGCAACCTTTTAAAAAAAGTTGAGATAAAC
66 ACAACCTTAAAAAGGTAGGAATAGACATTGTCTAAAGCAACCTTTTAAAAAAAGTTGAGATAAAC
* * * *
8175488 CCGTCTAAAACAACCTTAGAAAAGTTGGGATAGATATTGTCTAAGGCAACCTTTAAAAAAAAGTT
131 CAGTCTAAAACAACCTTAGAAAAGTTGGGATAGACATTGTCCAAGACAACCTTT-AAAAAAAGTT
* * **
8175553 GGGATAGACCTGTCTAAGACAACCTT
195 AGGATAAACCCATCTAAGACAACCTT
*
8175579 AAAAAGTTGGGATAGGTCTTGTCTAAGACAACTTTTTAAAAAAGGTTAGGATAGACTCC-TCTAA
1 AAAAAGTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAGGTTAGGATAGAC-CCGTCTAA
* * * * * *
8175643 GACAACCTTAAAAAGGTCAGG-ATAGACCTTTTCTAAAGCAATCTTTTATAATAAGTTGGGATAA
65 GACAACCTTAAAAAGGT-AGGAATAGACATTGTCTAAAGCAACCTTTTAAAAAAAGTTGAGATAA
* ** *
8175707 ACTAGTCTAAGGCAACTTTA-AAAAGGTTGGGATA-AGCATTGTCCAAGACAACCTTTAAAAAAA
129 ACCAGTCTAAAACAACCTTAGAAAA-GTTGGGATAGA-CATTGTCCAAGACAACCTTTAAAAAAA
* *
8175770 GTTAGGATAAACCCATCTAAGGCAATCTT
192 GTTAGGATAAACCCATCTAAGACAACCTT
*** *
8175799 AAAAAGGTTGGGATAAACCTTGTCTAAGGCAACC--TTAAAAAAG
1 AAAAA-GTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAG
8175842 TTGAAATAGA
Statistics
Matches: 227, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
219 9 0.04
220 40 0.18
221 174 0.77
222 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.26
Consensus pattern (220 bp):
AAAAAGTTGGGATAGGTCTTGTCTAAGACAACCTTTTAAAAAAGGTTAGGATAGACCCGTCTAAG
ACAACCTTAAAAAGGTAGGAATAGACATTGTCTAAAGCAACCTTTTAAAAAAAGTTGAGATAAAC
CAGTCTAAAACAACCTTAGAAAAGTTGGGATAGACATTGTCCAAGACAACCTTTAAAAAAAGTTA
GGATAAACCCATCTAAGACAACCTT
Found at i:8176098 original size:15 final size:16
Alignment explanation
Indices: 8176068--8176100 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8176058 AAAAAGTTAC
8176068 AAAAGAAAAGTAAAAT
1 AAAAGAAAAGTAAAAT
*
8176084 AAAATAAAA-TAAAAT
1 AAAAGAAAAGTAAAAT
8176099 AA
1 AA
8176101 TTGCTCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (16 bp):
AAAAGAAAAGTAAAAT
Found at i:8176278 original size:36 final size:36
Alignment explanation
Indices: 8176220--8176552 Score: 370
Period size: 36 Copynumber: 9.2 Consensus size: 36
8176210 GGGGTTACAA
* *
8176220 GGATAAACC-TGTCTAAGACAACCTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
* *
8176255 AGG-TA-AGCCTTGTCTAAGGCAACCTTTTAAAAAAGTTA
1 -GGATAGA-CCTTGTCTAAGGCAACC--TTAAAAAGGTTG
* * * * *
8176293 GGATAGACC-CGTCTAACGTAACCTTAAAAATGTTA
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
* * * *
8176328 GGATAAACATTGTTTAAGACAACCTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
* *
8176364 GGATAGACCTTGTCTGAGGCAACCTTTAAAAAAAGTTG
1 GGATAGACCTTGTCTAAGGCAACC-TT-AAAAAGGTTG
*
8176402 GGATAGACCTTGTCTAAGGCAACCATAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
*
8176438 GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
* * *
8176474 GGATAAACC-CGTCTAAGGCAACTTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
* * *
8176509 GGATAAATCTTGTCTAAGGCAATCTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
8176545 GGATAGAC
1 GGATAGAC
8176553 ACGATTATTT
Statistics
Matches: 250, Mismatches: 37, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
34 1 0.00
35 53 0.21
36 133 0.53
37 16 0.06
38 46 0.18
39 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.26
Consensus pattern (36 bp):
GGATAGACCTTGTCTAAGGCAACCTTAAAAAGGTTG
Found at i:8176409 original size:109 final size:107
Alignment explanation
Indices: 8176219--8176549 Score: 366
Period size: 109 Copynumber: 3.1 Consensus size: 107
8176209 GGGGGTTACA
*
8176219 AGGATAAACCTGTCTAAGACAACCTTAAAAAGGTTGAGG-TAAGCCTTGTCTAAGGCAACCTTTT
1 AGGATAAACTTGTCTAAGACAACCTTAAAAAGGTTG-GGATAA-CCTTGTCTAAGGCAACC-TTT
* * * *
8176283 AAAAAAGTTAGGATAGACC-CGTCTAACGTAACCTTAAAAATGTT
63 AAAAAAGTTGGGATAGACCTCGTCTAACGCAACCATAAAAAGGTT
* *
8176327 AGGATAAACATTGTTTAAGACAACCTTAAAAAGGTTGGGATAGACCTTGTCTGAGGCAACCTTTA
1 AGGATAAAC-TTGTCTAAGACAACCTTAAAAAGGTTGGGATA-ACCTTGTCTAAGGCAACCTTT-
* *
8176392 AAAAAAGTTGGGATAGACCTTGTCTAAGGCAACCATAAAAAGGTT
63 AAAAAAGTTGGGATAGACCTCGTCTAACGCAACCATAAAAAGGTT
* * *
8176437 GGGATAGACCTTGTCTAA-AGCAACCTTAAAAAGGTTGGGATAAACC-CGTCTAAGGCAA-CTTT
1 AGGATA-AACTTGTCTAAGA-CAACCTTAAAAAGGTTGGGAT-AACCTTGTCTAAGGCAACCTTT
* * * * * * *
8176499 AAAAAGGTTGGGATAAATCTTGTCTAAGGCAATCTTAAAAAGGTT
63 AAAAAAGTTGGGATAGACCTCGTCTAACGCAACCATAAAAAGGTT
*
8176544 GGGATA
1 AGGATA
8176550 GACACGATTA
Statistics
Matches: 196, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
107 46 0.23
108 18 0.09
109 72 0.37
110 57 0.29
111 3 0.02
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (107 bp):
AGGATAAACTTGTCTAAGACAACCTTAAAAAGGTTGGGATAACCTTGTCTAAGGCAACCTTTAAA
AAAGTTGGGATAGACCTCGTCTAACGCAACCATAAAAAGGTT
Found at i:8176509 original size:71 final size:72
Alignment explanation
Indices: 8176220--8176549 Score: 364
Period size: 71 Copynumber: 4.6 Consensus size: 72
8176210 GGGGTTACAA
* *
8176220 GGATAAACC-TGTCT-AAGACAACCTTAAAAAGGTTGAGG-TAAGCCTTGTCTAAGGCAACCTTT
1 GGATAGACCTTGTCTAAAG-CAACCTTAAAAAGGTTG-GGATAAACCTTGTCTAAGGCAACC--T
* *
8176282 TAAAAAAGTTA
62 TAAAAAGGTTG
* * * * * * * *
8176293 GGATAGACC-CGTCTAACGTAACCTTAAAAATGTTAGGATAAACATTGTTTAAGACAACCTTAAA
1 GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACCTTAAA
8176357 AAGGTTG
66 AAGGTTG
* * * * *
8176364 GGATAGACCTTGTCTGAGGCAACCTTTAAAAAAAGTTGGGATAGACCTTGTCTAAGGCAACCATA
1 GGATAGACCTTGTCTAAAGCAACC-TT-AAAAAGGTTGGGATAAACCTTGTCTAAGGCAACCTTA
8176429 AAAAGGTTG
64 AAAAGGTTG
* *
8176438 GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAAACC-CGTCTAAGGCAACTTTAAA
1 GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACCTTAAA
8176502 AAGGTTG
66 AAGGTTG
* * * *
8176509 GGATAAATCTTGTCTAAGGCAATCTTAAAAAGGTTGGGATA
1 GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATA
8176550 GACACGATTA
Statistics
Matches: 218, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
71 79 0.36
72 29 0.13
73 47 0.22
74 63 0.29
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (72 bp):
GGATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACCTTAAA
AAGGTTG
Found at i:8177677 original size:126 final size:126
Alignment explanation
Indices: 8177439--8177829 Score: 453
Period size: 126 Copynumber: 3.0 Consensus size: 126
8177429 CCCAAAATTA
* * * * **
8177439 TCAGCATAGTGTTGGGCAAAGCCGACTCTTATTTATGCGTTACCTTAGGCATGCATATCCCAA-C
1 TCAGTATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAACC
* * * *
8177503 TCTTATACAAAGAGTTGGCCAAAACATATGTTAGCAACTCTATCCCAACACTTAGGAAAGTG
66 T-TTATACAAAGAGTTGGCCAAAACGTATGTTAACAAGTCTATTCCAACACTTAGGAAAGTG
* *
8177565 TCAGTATAGTATTGGACAAAGCCAACTCCTATTTAAGCGTTGTCTTAGGCATGCATATCCCAACC
1 TCAGTATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAACC
* * ** *
8177630 TTTATACAAAGAGTTGGTCAAAGCGTATGACAACAAGTTTATTCCAACACTTAGGAAAGTG
66 TTTATACAAAGAGTTGGCCAAAACGTATGTTAACAAGTCTATTCCAACACTTAGGAAAGTG
*
8177691 TCGCCATAGTGTTGGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCATTGTCTTAGGCATGC
1 T---C--A--G-T---ATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGC
* * *
8177756 GTATCCCAACCCTTATACAAAGAGTTGGCCAAAACGTATGTTGACAAGTCTA-TCTCAACACTTA
55 ATATCCCAACCTTTATACAAAGAGTTGGCCAAAACGTATGTTAACAAGTCTATTC-CAACACTTA
*
8177820 GAAAAGTG
119 GGAAAGTG
8177828 TC
1 TC
8177830 CCCGCAAAAG
Statistics
Matches: 223, Mismatches: 29, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
126 107 0.48
127 2 0.01
129 1 0.00
131 1 0.00
133 1 0.00
134 2 0.01
136 2 0.01
137 107 0.48
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (126 bp):
TCAGTATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAACC
TTTATACAAAGAGTTGGCCAAAACGTATGTTAACAAGTCTATTCCAACACTTAGGAAAGTG
Found at i:8177815 original size:137 final size:137
Alignment explanation
Indices: 8177570--8177829 Score: 396
Period size: 137 Copynumber: 1.9 Consensus size: 137
8177560 AAGTGTCAGT
* *
8177570 ATAGTATTGGACAAAGCCAACTCCTATTTAAGCGTTGTCTTAGGCATGCATATCCCAACCTTTAT
1 ATAGTATTGGACAAAGCCAACTCCTATTTAAGCATTGTCTTAGGCATGCATATCCCAACCCTTAT
* * * *
8177635 ACAAAGAGTTGGTCAAAGCGTATGACAACAAGTTTATTCCAACACTTAGGAAAGTGTCGCCATAG
66 ACAAAGAGTTGGCCAAAACGTATGACAACAAGTCTATTCCAACACTTAGAAAAGTGTCGCCATAG
8177700 TGTTGGC
131 TGTTGGC
* * *
8177707 ATAGTGTTGGACAAAGCCAACTCTTATTTAAGCATTGTCTTAGGCATGCGTATCCCAACCCTTAT
1 ATAGTATTGGACAAAGCCAACTCCTATTTAAGCATTGTCTTAGGCATGCATATCCCAACCCTTAT
***
8177772 ACAAAGAGTTGGCCAAAACGTATGTTGACAAGTCTA-TCTCAACACTTAGAAAAGTGTC
66 ACAAAGAGTTGGCCAAAACGTATGACAACAAGTCTATTC-CAACACTTAGAAAAGTGTC
8177830 CCCGCAAAAG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
136 2 0.02
137 108 0.98
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (137 bp):
ATAGTATTGGACAAAGCCAACTCCTATTTAAGCATTGTCTTAGGCATGCATATCCCAACCCTTAT
ACAAAGAGTTGGCCAAAACGTATGACAACAAGTCTATTCCAACACTTAGAAAAGTGTCGCCATAG
TGTTGGC
Found at i:8178158 original size:20 final size:19
Alignment explanation
Indices: 8178111--8178159 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
8178101 TACTAAATAA
*
8178111 TAAAATATAATAATTATTT
1 TAAAATATAATAATTATCT
8178130 TAAAATATAATATATTA-CT
1 TAAAATATAATA-ATTATCT
8178149 TAAAATTATAA
1 TAAAA-TATAA
8178160 AATACATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TAAAATATAATAATTATCT
Found at i:8188530 original size:35 final size:35
Alignment explanation
Indices: 8188491--8188634 Score: 116
Period size: 35 Copynumber: 4.1 Consensus size: 35
8188481 TATTAATTCT
* *
8188491 AAGAAGTATCGATGTTGTGAAGAGATGTTAATCGA
1 AAGAAGTATCGATGTTGTGGAGAGATGTTAATTGA
* * *
8188526 AAGAAATATC-A-GCATTGAGGCGAGATGTTAGA-TGA
1 AAGAAGTATCGATG--TTGTGGAGAGATGTTA-ATTGA
* * * *
8188561 ATGAAGTATCGGTGTTGTTGCA-AGATGTTAATTGG
1 AAGAAGTATCGATGTTG-TGGAGAGATGTTAATTGA
* * *
8188596 AAGAAGTATCGGTGTTGTGGCGGGATGTTAATTGA
1 AAGAAGTATCGATGTTGTGGAGAGATGTTAATTGA
8188631 AAGA
1 AAGA
8188635 GGATTGGCGT
Statistics
Matches: 84, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
33 1 0.01
34 4 0.05
35 76 0.90
36 2 0.02
37 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.29
Consensus pattern (35 bp):
AAGAAGTATCGATGTTGTGGAGAGATGTTAATTGA
Found at i:8189911 original size:51 final size:52
Alignment explanation
Indices: 8189817--8189927 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 52
8189807 ATAGAAATGG
** *
8189817 TGAAAATATAGAAATGGGAAACATTTGAAAATGATTATGGTTTTCTAAAAAA
1 TGAAAATGGAGAAATGGGAAACATTTGAAAATGAATATGGTTTTCTAAAAAA
* * * **
8189869 TGAAAATGGAGAAAT-GGAATCATTTGAAGATGAATGTGGTTTTCTCCAAAA
1 TGAAAATGGAGAAATGGGAAACATTTGAAAATGAATATGGTTTTCTAAAAAA
8189920 TGAAAATG
1 TGAAAATG
8189928 AAAAATGAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
51 38 0.75
52 13 0.25
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (52 bp):
TGAAAATGGAGAAATGGGAAACATTTGAAAATGAATATGGTTTTCTAAAAAA
Found at i:8189934 original size:7 final size:7
Alignment explanation
Indices: 8189916--8189945 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8189906 GGTTTTCTCC
8189916 AAAATG-
1 AAAATGA
8189922 AAAATGA
1 AAAATGA
8189929 AAAATGA
1 AAAATGA
8189936 AAAATGA
1 AAAATGA
8189943 AAA
1 AAA
8189946 TGACCTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:8200942 original size:31 final size:31
Alignment explanation
Indices: 8200871--8200950 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
8200861 ACATTCAAAT
* *
8200871 AACAAAAACAACAATCAAAACAGCAGCAAAAAT
1 AACAACAA-AACAA-CAAAACAGCAGCAAAAAC
* * *
8200904 GATAACAAAACAACAAAATAGCAGCAAAAAC
1 AACAACAAAACAACAAAACAGCAGCAAAAAC
8200935 AACAACAAAAGCAACA
1 AACAACAAAA-CAACA
8200951 CCAAAACAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
31 24 0.62
32 10 0.26
33 5 0.13
ACGTcount: A:0.66, C:0.21, G:0.07, T:0.05
Consensus pattern (31 bp):
AACAACAAAACAACAAAACAGCAGCAAAAAC
Found at i:8200943 original size:12 final size:12
Alignment explanation
Indices: 8200928--8201006 Score: 60
Period size: 12 Copynumber: 7.0 Consensus size: 12
8200918 AAAATAGCAG
8200928 CAAAAACAACAA
1 CAAAAACAACAA
*
8200940 CAAAAGCAAC-A
1 CAAAAACAACAA
*
8200951 CCAAAAC-A-AA
1 CAAAAACAACAA
*
8200961 -AAAAACAGC-A
1 CAAAAACAACAA
* * * *
8200971 CCAAAATAATAG
1 CAAAAACAACAA
8200983 CAAAAACAACAA
1 CAAAAACAACAA
8200995 CAAAAACAACAA
1 CAAAAACAACAA
8201007 TATAATTTTT
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
9 5 0.10
10 3 0.06
11 11 0.23
12 29 0.60
ACGTcount: A:0.70, C:0.24, G:0.04, T:0.03
Consensus pattern (12 bp):
CAAAAACAACAA
Found at i:8200956 original size:55 final size:53
Alignment explanation
Indices: 8200873--8201005 Score: 137
Period size: 55 Copynumber: 2.4 Consensus size: 53
8200863 ATTCAAATAA
* * *
8200873 CAAAAACAACAATCAAAACAGCAGCAAAA-ATGATAACAAAACA-A-CAAAATAGCAG
1 CAAAAACAACAA-CAAAACAACACCAAAACA--A-AA-AAAACACACCAAAATAACAG
*
8200928 CAAAAACAACAACAAAAGCAACACCAAAACAAAAAAAACAGCACCAAAATAATAG
1 CAAAAACAACAACAAAA-CAACACCAAAACAAAAAAAACA-CACCAAAATAACAG
8200983 CAAAAACAACAACAAAAACAACA
1 CAAAAACAACAAC-AAAACAACA
8201006 ATATAATTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
52 6 0.09
53 2 0.03
54 7 0.10
55 48 0.71
56 5 0.07
ACGTcount: A:0.67, C:0.23, G:0.06, T:0.05
Consensus pattern (53 bp):
CAAAAACAACAACAAAACAACACCAAAACAAAAAAAACACACCAAAATAACAG
Found at i:8200958 original size:20 final size:20
Alignment explanation
Indices: 8200930--8200999 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 20
8200920 AATAGCAGCA
8200930 AAAACAACAACAAAAGCAACACC
1 AAAACAA-AA-AAAA-CAACACC
*
8200953 AAAACAAAAAAAACAGCACC
1 AAAACAAAAAAAACAACACC
* *
8200973 AAAATAATAGCAAAAACAACAAC
1 AAAACAA-A--AAAAACAACACC
8200996 AAAA
1 AAAA
8201000 ACAACAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 12 0.30
21 5 0.12
22 2 0.05
23 21 0.52
ACGTcount: A:0.70, C:0.23, G:0.04, T:0.03
Consensus pattern (20 bp):
AAAACAAAAAAAACAACACC
Found at i:8204492 original size:20 final size:22
Alignment explanation
Indices: 8204467--8204519 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
8204457 AAACATGCTC
**
8204467 AAAATTATGAGG-C-AATACCA
1 AAAATTATGAGGACAAATAAAA
*
8204487 AAAATTATAAGGACAAATAAAA
1 AAAATTATGAGGACAAATAAAA
8204509 AAAATTATGAG
1 AAAATTATGAG
8204520 TAAAATACCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 11 0.41
21 1 0.04
22 15 0.56
ACGTcount: A:0.58, C:0.08, G:0.13, T:0.21
Consensus pattern (22 bp):
AAAATTATGAGGACAAATAAAA
Found at i:8206049 original size:16 final size:16
Alignment explanation
Indices: 8206028--8206067 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
8206018 AAAAGATTCC
8206028 TAAACGACCAGGGTCG
1 TAAACGACCAGGGTCG
8206044 TAAACGACCAGGGTCG
1 TAAACGACCAGGGTCG
8206060 TAAACGAC
1 TAAACGAC
8206068 AATACTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.28, T:0.12
Consensus pattern (16 bp):
TAAACGACCAGGGTCG
Found at i:8207795 original size:17 final size:17
Alignment explanation
Indices: 8207773--8207820 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
8207763 GGCCTAGTAC
8207773 AAAATAAACCAAAACA-A
1 AAAATAAACCAAAA-ATA
*
8207790 AAAATAAAACAAAAATA
1 AAAATAAACCAAAAATA
8207807 AATAATAAACCAAA
1 AA-AATAAACCAAA
8207821 GTTCATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 16 0.59
18 10 0.37
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAATAAACCAAAAATA
Found at i:8207804 original size:18 final size:18
Alignment explanation
Indices: 8207773--8207820 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
8207763 GGCCTAGTAC
*
8207773 AAAAT-AAACCAAAACAA
1 AAAATAAAACAAAAACAA
*
8207790 AAAATAAAACAAAAATAA
1 AAAATAAAACAAAAACAA
* *
8207808 ATAATAAACCAAA
1 AAAATAAAACAAA
8207821 GTTCATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.10
Consensus pattern (18 bp):
AAAATAAAACAAAAACAA
Found at i:8209383 original size:17 final size:17
Alignment explanation
Indices: 8209351--8209407 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
8209341 ATTAATTTAG
8209351 AATGACAAATGAAAATGT
1 AATGAC-AATGAAAATGT
*
8209369 AATGACAATGCAAATGT
1 AATGACAATGAAAATGT
* * *
8209386 AGTGACAATTAAAATGC
1 AATGACAATGAAAATGT
8209403 AATGA
1 AATGA
8209408 TAAAAGGAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 27 0.82
18 6 0.18
ACGTcount: A:0.51, C:0.09, G:0.18, T:0.23
Consensus pattern (17 bp):
AATGACAATGAAAATGT
Found at i:8209893 original size:24 final size:24
Alignment explanation
Indices: 8209840--8209894 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
8209830 ATTTGCCTCG
*
8209840 ACTTCTTTTCCTTCCTTTCTTTCT
1 ACTTCTTTTCCTTCCTTTCTTTCC
** *
8209864 TTTTCTTTTCCTTCTTCTTC-TTCC
1 ACTTCTTTTCCTTCCT-TTCTTTCC
8209888 ACTTCTT
1 ACTTCTT
8209895 CTTTGTGTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.64
Consensus pattern (24 bp):
ACTTCTTTTCCTTCCTTTCTTTCC
Found at i:8221523 original size:14 final size:13
Alignment explanation
Indices: 8221506--8221532 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8221496 TCCACTATAC
8221506 TTTTTAAAAGCAA
1 TTTTTAAAAGCAA
8221519 TTTTTAAAAGCAA
1 TTTTTAAAAGCAA
8221532 T
1 T
8221533 GCTAAACTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TTTTTAAAAGCAA
Found at i:8224345 original size:30 final size:31
Alignment explanation
Indices: 8224305--8224397 Score: 97
Period size: 30 Copynumber: 3.1 Consensus size: 31
8224295 TTGGAAGTTC
*
8224305 AAATCCAAATTTTTGGGAAA-TTT-GGCGGTT
1 AAATCTAAATTTTTGGGAAAGTTTAGG-GGTT
*
8224335 AAATCTAAATTTTT-AGAAAGTTTAGGGGTT
1 AAATCTAAATTTTTGGGAAAGTTTAGGGGTT
* *
8224365 AAAT-TCAAAATTTTGGG-AAGTTTAAGGGTT
1 AAATCT-AAATTTTTGGGAAAGTTTAGGGGTT
8224395 AAA
1 AAA
8224398 ATATAATTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
29 5 0.09
30 46 0.85
31 3 0.06
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (31 bp):
AAATCTAAATTTTTGGGAAAGTTTAGGGGTT
Found at i:8224395 original size:60 final size:60
Alignment explanation
Indices: 8224305--8224421 Score: 139
Period size: 60 Copynumber: 1.9 Consensus size: 60
8224295 TTGGAAGTTC
* * * * *
8224305 AAATCCAAATTTTTGGGAAATTTGGCGGTT-AAATCTAAATTTTTAGAAAGTTTAGGGGTT
1 AAATCCAAAATTTTGGGAAATTTAGCGGTTAAAATAT-AATTTCTAAAAAGTTTAGGGGTT
* *
8224365 AAATTCAAAATTTTGGGAAGTTTAAG-GGTTAAAATATAATTTCTAAAAAGTTTAGGG
1 AAATCCAAAATTTTGGGAAATTT-AGCGGTTAAAATATAATTTCTAAAAAGTTTAGGG
8224422 ACCTCTTGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
60 42 0.88
61 6 0.12
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.37
Consensus pattern (60 bp):
AAATCCAAAATTTTGGGAAATTTAGCGGTTAAAATATAATTTCTAAAAAGTTTAGGGGTT
Found at i:8226302 original size:85 final size:85
Alignment explanation
Indices: 8226157--8226323 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
8226147 TCACTTTATT
* * * *
8226157 GATTTGATCTACTTCTTTGTATCTTATCAGGAAGATGACAGCCTTATTAATTGAATCCACTTCTT
1 GATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACAGCCTTATTAATTGAACCCACTTCTC
*
8226222 TGTATCTCATCAGGAAGGCA
66 TATATCTCATCAGGAAGGCA
* * **
8226242 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTAG-TTTATTGCTTTG-ACCCACTTC
1 GATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGAC-AGCCTTATT-AATTGAACCCACTTC
8226305 TCTATATCTCATCAGGAAG
64 TCTATATCTCATCAGGAAG
8226324 ATGGGGTTTG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
85 66 0.93
86 5 0.07
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACAGCCTTATTAATTGAACCCACTTCTC
TATATCTCATCAGGAAGGCA
Found at i:8226401 original size:208 final size:207
Alignment explanation
Indices: 8226037--8226501 Score: 650
Period size: 208 Copynumber: 2.2 Consensus size: 207
8226027 GCTTCATCTC
* * * *
8226037 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATTACCGCTTTATTGATTTGACCCACTTCTCTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACAG-TTTATTGCTTTGACCCACTTCTCTAT
*
8226102 ATCTCATCAAAAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTTATTGATTTGATCT
65 ATCTCATCAAAAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTTGATCT
* * * *
8226167 ACTTCTTTGTATCTTATCAGGAAGATGA-CAGCCTT-ATTAATTGAATCCACTTCTTTGTATCTC
130 ACTTCTCTATATCTCATCAAGAAGATGACCA--CTTCATTAATTGAATCCACTTCTTTGTATCTC
*
8226230 ATCAGGAAGGCAG-AT
193 ATCAAGAAGG-AGAAT
8226245 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTAGTTTATTGCTTTGACCCACTTCTCTAT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGAC-AGTTTATTGCTTTGACCCACTTCTCTAT
** * * *
8226310 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTTGTATTGAGCTTCGCTTCATTGATTTGGTCT
65 ATCTCATCAAAAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTTGATCT
* *
8226375 ACTTCTCTATATCTCATCAAGAAGATGACCACTTCATTGATTTAATCCACTTCTTTGTATCTCAT
130 ACTTCTCTATATCTCATCAAGAAGATGACCACTTCATTAATTGAATCCACTTCTTTGTATCTCAT
*
8226440 CAAGAAGGTGAAT
195 CAAGAAGGAGAAT
* * *
8226453 TTGGT-TCACTTCTCTGTATCTCATTAGGAAGGTGACCATTTTATTGCTT
1 TTGGTCT-ACTTCTCTGTATCTCATCAGGAAGATGA-CAGTTTATTGCTT
8226502 CGGATGACTG
Statistics
Matches: 230, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
207 5 0.02
208 221 0.96
209 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.40
Consensus pattern (207 bp):
TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACAGTTTATTGCTTTGACCCACTTCTCTATA
TCTCATCAAAAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTTGATCTA
CTTCTCTATATCTCATCAAGAAGATGACCACTTCATTAATTGAATCCACTTCTTTGTATCTCATC
AAGAAGGAGAAT
Found at i:8226644 original size:81 final size:81
Alignment explanation
Indices: 8226503--8226830 Score: 378
Period size: 81 Copynumber: 4.0 Consensus size: 81
8226493 TTATTGCTTC
** *
8226503 GGATGA-CTGCAATCTACCCCATGGTCGGGGTAAGAGATTGGATGATGGTTGCTATCTGCCCCAT
1 GGATGAGCTGCAATCTACCCCATAATCGGGGTAAGAGATTGGATGAT-GTTGCAATCTGCCCCAT
8226567 GATCGGGGTAAGAGATT
65 GATCGGGGTAAGAGATT
* * * * *
8226584 GGATG-GCTACAATCTACCTCATGATCGGGGTAAGAGATTGGATGATGGTTGCAATATGCCCCAA
1 GGATGAGCTGCAATCTACCCCATAATCGGGGTAAGAGATTGGATGAT-GTTGCAATCTGCCCCAT
*
8226648 GATCGAGGTAAGAGATT
65 GATCGGGGTAAGAGATT
* * * * * * * * * *
8226665 GGATGATGATGTAATTTGCCCCGTAATCGGGGTAAGAGATTGGATGATGATGTAATTTTCCTCAT
1 GGATGA-GCTGCAATCTACCCCATAATCGGGGTAAGAGATTGGATGATGTTGCAATCTGCCCCAT
8226730 GATCGGGGTAAGAGATT
65 GATCGGGGTAAGAGATT
* * *
8226747 GGATGATAGCTGCAATCTACCCCATAAT-TGCGTAAGAGATTGGATGATG--ACAATCTGCCCCA
1 GGATG--AGCTGCAATCTACCCCATAATCGGGGTAAGAGATTGGATGATGTTGCAATCTGCCCCA
8226809 TGATCGGGGTAAGAGATT
64 TGATCGGGGTAAGAGATT
8226827 GGAT
1 GGAT
8226831 AATGATGTAA
Statistics
Matches: 208, Mismatches: 34, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
80 30 0.14
81 78 0.38
82 51 0.25
83 48 0.23
84 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (81 bp):
GGATGAGCTGCAATCTACCCCATAATCGGGGTAAGAGATTGGATGATGTTGCAATCTGCCCCATG
ATCGGGGTAAGAGATT
Found at i:8226699 original size:41 final size:41
Alignment explanation
Indices: 8226504--8226837 Score: 363
Period size: 41 Copynumber: 8.2 Consensus size: 41
8226494 TATTGCTTCG
* *
8226504 GATGACTGCAATCTACCCCATGGTCGGGGTAAGAGATTGGAT
1 GATGA-TGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* *
8226546 GATGGTTGCTATCTGCCCCATGATCGGGGTAAGAGATTGGAT
1 GAT-GATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * *
8226588 G--GCTACAATCTACCTCATGATCGGGGTAAGAGATTGGAT
1 GATGATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * *
8226627 GATGGTTGCAATATGCCCCAAGATCGAGGTAAGAGATTGGAT
1 GAT-GATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * *
8226669 GATGATGTAATTTGCCCCGTAATCGGGGTAAGAGATTGGAT
1 GATGATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * *
8226710 GATGATGTAATTTTCCTCATGATCGGGGTAAGAGATTGGAT
1 GATGATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * * *
8226751 GATAGCTGCAATCTACCCCATAAT-TGCGTAAGAGATTGGAT
1 GAT-GATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
8226792 GATGA--CAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
1 GATGATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
*
8226831 AATGATG
1 GATGATG
8226838 TAACTGCACT
Statistics
Matches: 243, Mismatches: 41, Indels: 17
0.81 0.14 0.06
Matches are distributed among these distances:
38 14 0.06
39 53 0.22
40 1 0.00
41 89 0.37
42 85 0.35
43 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (41 bp):
GATGATGCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
Found at i:8227124 original size:49 final size:49
Alignment explanation
Indices: 8227071--8227517 Score: 337
Period size: 50 Copynumber: 9.1 Consensus size: 49
8227061 ATGTTCCTAA
**
8227071 GGTACCAGGTTTACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
* * * * * *
8227120 GGTACCAGGTTCGCCATTACGACCTTAACCTTTCCCATCACAT-TTCAT
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
* ** * * * * ** *
8227168 GGTAGCAAATTCGTCGTTACGACCTCAATCC-TTCCCATCATGTCTTCTAA
1 GGTACCAGGTTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCAAATCTTC-AT
* * * **
8227218 GGTATCGGGTTTGCTATTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
* * * * ** * *
8227267 GGCAAC-GAGTTCGCCATTGCGGCCTTAAATTTTTTCCTTCATATCTTCAT
1 GGTACCAG-GTTCGCCGTTGCGGCC-TCAACCTTTCCCTTCAAATCTTCAT
* * *
8227317 GGTACCGGGTTCGTCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
* * * ** * * *
8227366 GATACTAGATTCGTTGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAA
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTC-AT
* * * *
8227416 GGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCATTGC--ATCTGCTAA
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCC-TT-CAAATCTTC-AT
** * *
8227466 GGTACTGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
8227515 GGT
1 GGT
8227518 TCACAGCTCA
Statistics
Matches: 314, Mismatches: 72, Indels: 24
0.77 0.18 0.06
Matches are distributed among these distances:
48 39 0.12
49 126 0.40
50 146 0.46
51 2 0.01
52 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (49 bp):
GGTACCAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
Found at i:8227326 original size:99 final size:99
Alignment explanation
Indices: 8227087--8227451 Score: 296
Period size: 99 Copynumber: 3.7 Consensus size: 99
8227077 AGGTTTACCG
* * * * * ** * * *
8227087 TTGCGGCCTCAACCTTTCCCTTCAAATCTTC-ATGGTACCAGGTTCGCCATTACGACCTTAACCT
1 TTGCGGCCTAAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCT
* * * * * *
8227151 TTCCCATCACAT-TTCATGGTA-GCAAATTCGTCG
66 TTCCCTTCAAATCTTCATGATACG-AGATTCGCCA
* * * ** * * *
8227184 TTACGACCTCAATCC-TTCCCATCATGTCTTCTAAGGTATCGGGTTTGCTATTGCGGCCTCAACC
1 TTGCGGCCT-AAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACC
8227248 TTTCCCTTCAAATCTTCATGGCA-ACGAG-TTCGCCA
65 TTTCCCTTCAAATCTTCAT-G-ATACGAGATTCGCCA
** * * * * *
8227283 TTGCGGCCTTAAATTTTTTCCTTCATATCTTC-ATGGTACCGGGTTCG-TCGTTGTGGCCTCAAC
1 TTGCGGCC-TAAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCT-GTTGCGGCCTCAAC
* ***
8227346 CTTTCCCTTCAAATCTTCATGATACTAGATTCGTTG
64 CTTTCCCTTCAAATCTTCATGATACGAGATTCGCCA
*
8227382 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCT
1 TTGCGGCCTAAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCT
8227447 TTCCC
66 TTCCC
8227452 ATTGCATCTG
Statistics
Matches: 209, Mismatches: 46, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
97 21 0.10
98 61 0.29
99 108 0.52
100 18 0.09
101 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (99 bp):
TTGCGGCCTAAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCT
TTCCCTTCAAATCTTCATGATACGAGATTCGCCA
Found at i:8227428 original size:149 final size:148
Alignment explanation
Indices: 8227234--8227515 Score: 336
Period size: 149 Copynumber: 1.9 Consensus size: 148
8227224 GGGTTTGCTA
* * **
8227234 TTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGCAACGAGTTCGCCATTGCGGCCTTAAATTT
1 TTGCGGCCTCAACCTTTCCCATCAAATCTTCAAGGCAACGAGTTCGCCATTGCGGCC-TAAACCT
* * * ** * *
8227299 TTTCC-TT-CATAT-CTTCATGGTACCGGGTTCGTCGTTGTGGCCTCAACCTTTCCCTTCAAATC
65 TTCCCATTGCATCTGC-T-AAGGTACCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATC
8227361 TTCATGATACTAGATTCGTTG
128 TTCATGATACTAGATTCGTTG
* * * * ** *
8227382 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCT
1 TTGCGGCCTCAACCTTTCCCATCAAATCTTC-AAGGCAACGAGTTCGCCATTGCGGCCTAAACCT
*
8227447 TTCCCATTGCATCTGCTAAGGTACTGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTT
65 TTCCCATTGCATCTGCTAAGGTACCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTT
8227512 CATG
130 CATG
8227516 GTTCACAGCT
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
148 37 0.33
149 68 0.61
150 5 0.05
151 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.17, T:0.34
Consensus pattern (148 bp):
TTGCGGCCTCAACCTTTCCCATCAAATCTTCAAGGCAACGAGTTCGCCATTGCGGCCTAAACCTT
TCCCATTGCATCTGCTAAGGTACCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTTC
ATGATACTAGATTCGTTG
Found at i:8233286 original size:30 final size:30
Alignment explanation
Indices: 8233245--8233388 Score: 161
Period size: 30 Copynumber: 4.8 Consensus size: 30
8233235 CAACATGAAA
* *
8233245 TTTTGGAAAGTTTGAGGGCTAAATTCAAAT
1 TTTTGGGAAGTTTGAGGGTTAAATTCAAAT
* *
8233275 TTTTGGGAAGTTT-AGGGGTCAAATCCAAAT
1 TTTTGGGAAGTTTGA-GGGTTAAATTCAAAT
8233305 TTTTGGGAAGTTTGAGGGTTAAATTCAAAT
1 TTTTGGGAAGTTTGAGGGTTAAATTCAAAT
*
8233335 TTTTGGAAAGTTT-ACGGGTTAAA-TCAGAAT
1 TTTTGGGAAGTTTGA-GGGTTAAATTCA-AAT
* *
8233365 TTTTAGGG-AGTTTGGGGGTCAAAT
1 TTTT-GGGAAGTTTGAGGGTTAAAT
8233389 GTAATTTTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
29 5 0.05
30 89 0.92
31 3 0.03
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (30 bp):
TTTTGGGAAGTTTGAGGGTTAAATTCAAAT
Found at i:8233322 original size:60 final size:60
Alignment explanation
Indices: 8233245--8233378 Score: 191
Period size: 60 Copynumber: 2.2 Consensus size: 60
8233235 CAACATGAAA
* * *
8233245 TTTTGGAAAGTTTGAGGGCTAAATTCAAATTTTTGGGAAGTTTAGGGGTCAAATCCA-AAT
1 TTTTGGGAAGTTTGAGGGCTAAATTCAAATTTTTGGAAAGTTTACGGGTCAAAT-CAGAAT
* *
8233305 TTTTGGGAAGTTTGAGGGTTAAATTCAAATTTTTGGAAAGTTTACGGGTTAAATCAGAAT
1 TTTTGGGAAGTTTGAGGGCTAAATTCAAATTTTTGGAAAGTTTACGGGTCAAATCAGAAT
8233365 TTTTAGGG-AGTTTG
1 TTTT-GGGAAGTTTG
8233379 GGGGTCAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 2 0.03
60 62 0.93
61 3 0.04
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (60 bp):
TTTTGGGAAGTTTGAGGGCTAAATTCAAATTTTTGGAAAGTTTACGGGTCAAATCAGAAT
Found at i:8233842 original size:25 final size:25
Alignment explanation
Indices: 8233814--8233861 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
8233804 CGGTCGCCAG
8233814 TCACCCGCCGACCGTCGGCCACCAA
1 TCACCCGCCGACCGTCGGCCACCAA
*
8233839 TCACCCGCCGACCGTTGGCCACC
1 TCACCCGCCGACCGTCGGCCACC
8233862 GCCGTCGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.17, C:0.52, G:0.21, T:0.10
Consensus pattern (25 bp):
TCACCCGCCGACCGTCGGCCACCAA
Found at i:8235159 original size:24 final size:24
Alignment explanation
Indices: 8235125--8235171 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8235115 TCGGTAGTTG
8235125 CATAGTAAGTATCAGTAGATCTGTT
1 CATAGTAAGTATCAGTA-ATCTGTT
8235150 CATAG-AAGTATCAGTAATCTGT
1 CATAGTAAGTATCAGTAATCTGT
8235172 GAACTTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 6 0.27
24 11 0.50
25 5 0.23
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (24 bp):
CATAGTAAGTATCAGTAATCTGTT
Found at i:8236881 original size:21 final size:21
Alignment explanation
Indices: 8236857--8236898 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8236847 ATCAATATAA
*
8236857 TAATA-TTTTATTATATTATTT
1 TAATACTTTAATTA-ATTATTT
8236878 TAATACTTTAATTAATTATTT
1 TAATACTTTAATTAATTATTT
8236899 ATGACTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATACTTTAATTAATTATTT
Found at i:8239058 original size:18 final size:19
Alignment explanation
Indices: 8239035--8239070 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8239025 TTATTATTGT
*
8239035 TAAAA-TTTATTATTAAAA
1 TAAAATTTTAATATTAAAA
8239053 TAAAATTTTAATATTAAA
1 TAAAATTTTAATATTAAA
8239071 TAATTCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAATTTTAATATTAAAA
Found at i:8240884 original size:20 final size:21
Alignment explanation
Indices: 8240847--8240885 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8240837 TTCAACTCTT
*
8240847 AAACTTATTTTATGTTAAAAC
1 AAACTTATTTTATATTAAAAC
*
8240868 AAAC-TATTTTTTATTAAA
1 AAACTTATTTTATATTAAA
8240886 TAAACACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.46
Consensus pattern (21 bp):
AAACTTATTTTATATTAAAAC
Found at i:8242863 original size:29 final size:29
Alignment explanation
Indices: 8242801--8242872 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
8242791 TCATTTTAAT
*
8242801 AATATATATTTTTATAATTTTTAAAAAATTA
1 AATATA-ATTTTAAT-ATTTTTAAAAAATTA
*
8242832 AAT-TAATATTTAATATTTTT-AATAATTAA
1 AATATAAT-TTTAATATTTTTAAAAAATT-A
8242861 AATATAATTTTA
1 AATATAATTTTA
8242873 CCATTACTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
28 6 0.17
29 16 0.44
30 11 0.31
31 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
AATATAATTTTAATATTTTTAAAAAATTA
Found at i:8246354 original size:30 final size:29
Alignment explanation
Indices: 8246294--8246357 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
8246284 AATTTATATA
*
8246294 TTTATAATTTTAAAAAATTAAATTAAAAT
1 TTTATAATTTTAAAAAATTAAAGTAAAAT
** **
8246323 TTTATAATTTTAGAGGAATTAAAGTGTAAT
1 TTTATAATTTTA-AAAAATTAAAGTAAAAT
8246353 TTTAT
1 TTTAT
8246358 TTTTATTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (29 bp):
TTTATAATTTTAAAAAATTAAAGTAAAAT
Found at i:8246383 original size:9 final size:9
Alignment explanation
Indices: 8246371--8246398 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8246361 TATTAATTTT
8246371 AAATTTTAA
1 AAATTTTAA
8246380 AAATTTTAA
1 AAATTTTAA
8246389 AAATTTTAA
1 AAATTTTAA
8246398 A
1 A
8246399 CAATAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
AAATTTTAA
Found at i:8249077 original size:24 final size:23
Alignment explanation
Indices: 8249034--8249163 Score: 129
Period size: 23 Copynumber: 5.6 Consensus size: 23
8249024 GTTCGTGCTC
*
8249034 GTTCGTTTAACGTTCGTGAACAT
1 GTTCGTTTAATGTTCGTGAACAT
*
8249057 GTTCGTTTATATGTTCATGAACAT
1 GTTCGTTTA-ATGTTCGTGAACAT
* * *
8249081 GTTCATTTAATGTTCGAT-TATAT
1 GTTCGTTTAATGTTCG-TGAACAT
* * *
8249104 GTTCATTTAACGTTCGCGAACAT
1 GTTCGTTTAATGTTCGTGAACAT
* *
8249127 GTTCGTTTATGTGTTCGCGAACAT
1 GTTCGTTTA-ATGTTCGTGAACAT
8249151 GTTCGTTT-ATGTT
1 GTTCGTTTAATGTT
8249164 AACTATCCAA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
22 4 0.04
23 44 0.49
24 41 0.46
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (23 bp):
GTTCGTTTAATGTTCGTGAACAT
Found at i:8249125 original size:70 final size:69
Alignment explanation
Indices: 8249034--8249163 Score: 197
Period size: 70 Copynumber: 1.9 Consensus size: 69
8249024 GTTCGTGCTC
* * *
8249034 GTTCGTTTAACGTTCGTGAACATGTTCGTTTATATGTTCATGAACATGTTCATTTAATGTTCGAT
1 GTTCATTTAACGTTCGCGAACATGTTCGTTTATATGTTCACGAACATGTTCATTT-ATGTTCGAT
8249099 TATAT
65 TATAT
* * *
8249104 GTTCATTTAACGTTCGCGAACATGTTCGTTTATGTGTTCGCGAACATGTTCGTTTATGTT
1 GTTCATTTAACGTTCGCGAACATGTTCGTTTATATGTTCACGAACATGTTCATTTATGTT
8249164 AACTATCCAA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
69 5 0.09
70 49 0.91
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (69 bp):
GTTCATTTAACGTTCGCGAACATGTTCGTTTATATGTTCACGAACATGTTCATTTATGTTCGATT
ATAT
Found at i:8249129 original size:35 final size:35
Alignment explanation
Indices: 8249034--8249142 Score: 114
Period size: 35 Copynumber: 3.1 Consensus size: 35
8249024 GTTCGTGCTC
*
8249034 GTTCGTTTAACGTTCGTGAACATGTTCGTTTATAT
1 GTTCATTTAACGTTCGTGAACATGTTCGTTTATAT
* * ** *
8249069 GTTCA-TGAACATGTTCATTTA-ATGTTCGATTATAT
1 GTTCATTTAAC--GTTCGTGAACATGTTCGTTTATAT
* *
8249104 GTTCATTTAACGTTCGCGAACATGTTCGTTTATGT
1 GTTCATTTAACGTTCGTGAACATGTTCGTTTATAT
8249139 GTTC
1 GTTC
8249143 GCGAACATGT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
34 9 0.16
35 38 0.67
36 10 0.18
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (35 bp):
GTTCATTTAACGTTCGTGAACATGTTCGTTTATAT
Found at i:8249200 original size:19 final size:19
Alignment explanation
Indices: 8249176--8249216 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8249166 CTATCCAAAC
*
8249176 AAACAAAAAAAATTAAATA
1 AAACAAAAAAAACTAAATA
**
8249195 AAACAAAATCAACTAAATA
1 AAACAAAAAAAACTAAATA
8249214 AAA
1 AAA
8249217 AACTTAGCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.15
Consensus pattern (19 bp):
AAACAAAAAAAACTAAATA
Found at i:8250433 original size:20 final size:17
Alignment explanation
Indices: 8250408--8250446 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 17
8250398 ATCATGTATT
8250408 AAATTAAATAACATAAATGA
1 AAATTAAA-AA-AT-AATGA
8250428 AAATTAAAAAATAATGA
1 AAATTAAAAAATAATGA
8250445 AA
1 AA
8250447 TAAAACTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 2 0.11
20 8 0.42
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (17 bp):
AAATTAAAAAATAATGA
Found at i:8253511 original size:23 final size:24
Alignment explanation
Indices: 8253480--8253559 Score: 78
Period size: 23 Copynumber: 3.5 Consensus size: 24
8253470 ATGGGTCTAA
*
8253480 TAAAAGAGCTTATAAACTG-GCT-T
1 TAAACGAGCTTATAAAC-GAGCTAT
*
8253503 TAAACGAGCTT-TATACGAGCTAT
1 TAAACGAGCTTATAAACGAGCTAT
* * *
8253526 TAAACGAGCTAATAAACGAACCA-
1 TAAACGAGCTTATAAACGAGCTAT
8253549 TAAACGAGCTT
1 TAAACGAGCTT
8253560 GTTTGTGAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.02
22 7 0.15
23 31 0.66
24 8 0.17
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (24 bp):
TAAACGAGCTTATAAACGAGCTAT
Found at i:8253513 original size:11 final size:11
Alignment explanation
Indices: 8253480--8253559 Score: 63
Period size: 11 Copynumber: 7.0 Consensus size: 11
8253470 ATGGGTCTAA
*
8253480 TAAAAGAGCTT
1 TAAACGAGCTT
8253491 ATAAACTG-GCTT
1 -TAAAC-GAGCTT
8253503 TAAACGAGCTT
1 TAAACGAGCTT
*
8253514 TATACGAGCTAT
1 TAAACGAGCT-T
*
8253526 TAAACGAGCTAA
1 TAAACGAGCT-T
* **
8253538 TAAACGAACCA
1 TAAACGAGCTT
8253549 TAAACGAGCTT
1 TAAACGAGCTT
8253560 GTTTGTGAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
10 1 0.02
11 27 0.48
12 27 0.48
13 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (11 bp):
TAAACGAGCTT
Found at i:8253534 original size:12 final size:12
Alignment explanation
Indices: 8253502--8253558 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
8253492 TAAACTGGCT
8253502 TTAAACGAGCT-
1 TTAAACGAGCTA
*
8253513 TTATACGAGCTA
1 TTAAACGAGCTA
8253525 TTAAACGAGCTA
1 TTAAACGAGCTA
* * *
8253537 ATAAACGAACCA
1 TTAAACGAGCTA
8253549 -TAAACGAGCT
1 TTAAACGAGCT
8253559 TGTTTGTGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
11 18 0.47
12 20 0.53
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (12 bp):
TTAAACGAGCTA
Found at i:8254871 original size:31 final size:30
Alignment explanation
Indices: 8254835--8254909 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 30
8254825 ATGAAAATGT
*
8254835 AATTTTCGAGG-AATTTGGGGATCAAAATTAA
1 AATTTT-GAGGAAATTT-GGGATCAAAATCAA
* *
8254866 AATTTTGGGGAAATTTGGGATTAAAATCAA
1 AATTTTGAGGAAATTTGGGATCAAAATCAA
*
8254896 ACTTTT--GGAAATTT
1 AATTTTGAGGAAATTT
8254910 AAAGTTGGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
28 8 0.21
30 20 0.51
31 11 0.28
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.36
Consensus pattern (30 bp):
AATTTTGAGGAAATTTGGGATCAAAATCAA
Found at i:8254886 original size:30 final size:31
Alignment explanation
Indices: 8254846--8254903 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
8254836 ATTTTCGAGG
*
8254846 AATTTGGGGATCAAAATTAAAATTTTGGGGA
1 AATTTGGGGATCAAAATCAAAATTTTGGGGA
* *
8254877 AATTT-GGGATTAAAATCAAACTTTTGG
1 AATTTGGGGATCAAAATCAAAATTTTGG
8254904 AAATTTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.34
Consensus pattern (31 bp):
AATTTGGGGATCAAAATCAAAATTTTGGGGA
Found at i:8254957 original size:29 final size:29
Alignment explanation
Indices: 8254925--8254988 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
8254915 TGGAAATATG
*
8254925 ATTTTTAGAAATTTGGGGGTAAAATGGCA
1 ATTTTTAGAAATTTGGGGGCAAAATGGCA
* ** * *
8254954 ATTTTTGGATGTTTGGGGGCAACATGGTA
1 ATTTTTAGAAATTTGGGGGCAAAATGGCA
8254983 ATTTTT
1 ATTTTT
8254989 TGATGTTTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.28, T:0.41
Consensus pattern (29 bp):
ATTTTTAGAAATTTGGGGGCAAAATGGCA
Found at i:8254993 original size:29 final size:29
Alignment explanation
Indices: 8254936--8255006 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
8254926 TTTTTAGAAA
*
8254936 TTTGGGGGTAAAATGGCAATTTTTGGATG
1 TTTGGGGGCAAAATGGCAATTTTTGGATG
* * *
8254965 TTTGGGGGCAACATGGTAATTTTTTGATG
1 TTTGGGGGCAAAATGGCAATTTTTGGATG
* *
8254994 TTTAGAGGCAAAA
1 TTTGGGGGCAAAA
8255007 ATGTAATTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.27, C:0.06, G:0.31, T:0.37
Consensus pattern (29 bp):
TTTGGGGGCAAAATGGCAATTTTTGGATG
Found at i:8255012 original size:29 final size:29
Alignment explanation
Indices: 8254945--8255016 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
8254935 ATTTGGGGGT
* * *
8254945 AAAATGGCAATTTTTGGATGTTTGGGGGC
1 AAAATGGTAATTTTTGGATGTTTAGAGGC
* *
8254974 AACATGGTAATTTTTTGATGTTTAGAGGC
1 AAAATGGTAATTTTTGGATGTTTAGAGGC
8255003 AAAAAT-GTAATTTT
1 -AAAATGGTAATTTT
8255017 GGGAAAGTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 32 0.89
30 4 0.11
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.39
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGATGTTTAGAGGC
Found at i:8255036 original size:29 final size:28
Alignment explanation
Indices: 8255004--8255259 Score: 221
Period size: 29 Copynumber: 8.8 Consensus size: 28
8254994 TTTAGAGGCA
*
8255004 AAAATGTAATTTTGGGAAAGTTCAGGGGTA
1 AAAATGTAATTTT-GGAAAGTTC-GGGGTC
* * *
8255034 AAAATGTAA-TTTGGGAAGTTTGAGGTC
1 AAAATGTAATTTTGGAAAGTTCGGGGTC
* * * *
8255061 AAAATGTGATTTTTAGAAAGTTCAAGGAT-
1 AAAATGT-AATTTTGGAAAGTTC-GGGGTC
*
8255090 AAAATGTAATTTTGGAAAGTTTGGGGGTC
1 AAAATGTAATTTTGGAAAG-TTCGGGGTC
*
8255119 AAAACATG-ATTTTTGGAAAGTTCGAGGGTC
1 -AAA-ATGTAATTTTGGAAAGTTCG-GGGTC
8255149 AAAATGTAATTTTGGAAAGTTCGGGTGTC
1 AAAATGTAATTTTGGAAAGTTCGGG-GTC
* *
8255178 AAAACGTGAATTTTGGAAAGTTCGAGGGTA
1 AAAATGT-AATTTTGGAAAGTTCG-GGGTC
** * *
8255208 AAAATGTAATTTTGGTTAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAG-TTCGGGGTC
* *
8255237 AGAATGTGATTTTGGAAAGTTCG
1 AAAATGTAATTTTGGAAAGTTCG
8255260 AGGACCTTCT
Statistics
Matches: 182, Mismatches: 31, Indels: 28
0.76 0.13 0.12
Matches are distributed among these distances:
27 11 0.06
28 29 0.16
29 80 0.44
30 57 0.31
31 5 0.03
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.34
Consensus pattern (28 bp):
AAAATGTAATTTTGGAAAGTTCGGGGTC
Found at i:8255141 original size:58 final size:59
Alignment explanation
Indices: 8255012--8255262 Score: 296
Period size: 59 Copynumber: 4.3 Consensus size: 59
8255002 CAAAAATGTA
* * * *
8255012 ATTTTGGGAAAGTTC-AGGGGTAAAAATGTAA-TTTGGGAAGTTT-GAGGTCAAAATGTG
1 ATTTTTGGAAAGTTCGA-GGGTAAAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACGTG
* * * *
8255069 ATTTTTAGAAAGTTCAAGGAT-AAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACATG
1 ATTTTTGGAAAGTTCGAGGGTAAAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACGTG
* * *
8255127 ATTTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTGGAAAGTTCGGGTGTCAAAACGTG
1 ATTTTTGGAAAGTTCGAGGGTAAAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACGTG
* ** * * * *
8255186 AATTTTGGAAAGTTCGAGGGTAAAAATGTAATTTTGGTTAGTTTAGGGGTTAGAATGTG
1 ATTTTTGGAAAGTTCGAGGGTAAAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACGTG
8255245 A-TTTTGGAAAGTTCGAGG
1 ATTTTTGGAAAGTTCGAGG
8255263 ACCTTCTAGG
Statistics
Matches: 167, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
56 9 0.05
57 27 0.16
58 47 0.28
59 84 0.50
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (59 bp):
ATTTTTGGAAAGTTCGAGGGTAAAAATGTAATTTTGGAAAGTTTGGGGGTCAAAACGTG
Found at i:8256997 original size:17 final size:17
Alignment explanation
Indices: 8256975--8257021 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
8256965 ACTTTCAAAT
*
8256975 TTTAAATTTAAAATAAA
1 TTTAAAATTAAAATAAA
* *
8256992 TTTAAACTCAAAATAAA
1 TTTAAAATTAAAATAAA
*
8257009 TTAAAAATTAAAA
1 TTTAAAATTAAAA
8257022 ATTGGGTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (17 bp):
TTTAAAATTAAAATAAA
Found at i:8257240 original size:21 final size:20
Alignment explanation
Indices: 8257195--8257245 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8257185 AGTGCAGATT
*
8257195 TCTACCGATACAAGTGATTCT
1 TCTACCGATACAAGT-ATTCC
8257216 TCTACCGATACAAGT-TTCACC
1 TCTACCGATACAAGTATT--CC
8257237 TCTACCGAT
1 TCTACCGAT
8257246 CCTAAAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
21 25 0.93
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (20 bp):
TCTACCGATACAAGTATTCC
Found at i:8262534 original size:36 final size:36
Alignment explanation
Indices: 8262494--8262805 Score: 250
Period size: 36 Copynumber: 8.5 Consensus size: 36
8262484 TTGTAAAATA
*
8262494 TTAAAAAGGTTGGAATAGACCTTGTCTAAGGTAACC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
* * *
8262530 TTAAAAAGGTT-GGAGTAGACATTGTCTAAGCTAACAT
1 TTAAAAAGGTTGGGA-TAGACCTTGTCTAAGGTAAC-C
* * * * *
8262567 TTAAAAAAAGTTGGGATA-AACTCGTCTAAAGTAACT
1 TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
* * * * ** *
8262603 TTAAAAAGGTTAGGATAAATCATGTCTAAGACAATC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
* * * *
8262639 TTAAAAAAGTTAGGATAGACCTTGTTTAAGGTAACAT
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGTAAC-C
* * * *
8262676 TTAAAAAAAGTTGGGATATACCTTGTCTAATGCAACC
1 TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
* * *
8262713 TTAAAAAGATTGGGATAAACCTTGTCTAAGGCGAACC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGG-TAACC
* * **
8262750 TTTTAAAAAGGTTGGGATAAACCTTGCCTAAGACAACC
1 --TTAAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
*
8262788 TTAAAAAGGTTGGCATAG
1 TTAAAAAGGTTGGGATAG
8262806 TGTTGGACAA
Statistics
Matches: 220, Mismatches: 46, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
35 15 0.07
36 110 0.50
37 22 0.10
38 42 0.19
39 31 0.14
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (36 bp):
TTAAAAAGGTTGGGATAGACCTTGTCTAAGGTAACC
Found at i:8262685 original size:109 final size:109
Alignment explanation
Indices: 8262494--8262751 Score: 304
Period size: 109 Copynumber: 2.3 Consensus size: 109
8262484 TTGTAAAATA
* ** *
8262494 TTAAAAAGGTTGGAATAGACCTTGTCTAAGGTAACCTTAAAAAGGTTGGAGTAGACATTGTCTAA
1 TTAAAAAGGTTGG-ATAAACCTTGTCTAAGACAACCTTAAAAAAGTTGGAGTAGACATTGTCTAA
* *
8262559 GCTAACATTTAAAAAAAGTTGGGATA-AACTCGTCTAAAGTAACT
65 GCTAACATTTAAAAAAAGTTGGGATATAACTCGTCTAAAGCAACC
* * * * *
8262603 TTAAAAAGGTTAGGATAAATCATGTCTAAGACAATCTTAAAAAAGTTAGGA-TAGACCTTGTTTA
1 TTAAAAAGGTT-GGATAAACCTTGTCTAAGACAACCTTAAAAAAGTT-GGAGTAGACATTGTCTA
* * * *
8262667 AGGTAACATTTAAAAAAAGTTGGGATATACCTTGTCTAATGCAACC
64 AGCTAACATTTAAAAAAAGTTGGGATATAACTCGTCTAAAGCAACC
* *
8262713 TTAAAAAGATTGGGATAAACCTTGTCTAAGGCGAACCTT
1 TTAAAAAGGTT-GGATAAACCTTGTCTAAGAC-AACCTT
8262752 TTAAAAAGGT
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
109 74 0.60
110 45 0.36
111 5 0.04
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (109 bp):
TTAAAAAGGTTGGATAAACCTTGTCTAAGACAACCTTAAAAAAGTTGGAGTAGACATTGTCTAAG
CTAACATTTAAAAAAAGTTGGGATATAACTCGTCTAAAGCAACC
Found at i:8262705 original size:74 final size:71
Alignment explanation
Indices: 8262494--8262805 Score: 288
Period size: 74 Copynumber: 4.3 Consensus size: 71
8262484 TTGTAAAATA
* * * * *
8262494 TTAAAAAGGTTGGAATAGACCTTGTCTAAGGTAACCTTAAAAAGGTT-GGAGTAGACATTGTCTA
1 TTAAAAAAGTTGGGATAGACCTTGTCTAAGGTAACTTTAAAAAGGTTGGGA-TAAACCTTGTCTA
*
8262558 AGCTAACAT
65 AGC-AAC-C
* * * * * *
8262567 TTAAAAAAAGTTGGGATA-AACTCGTCTAAAGTAACTTTAAAAAGGTTAGGATAAATCATGTCTA
1 TT-AAAAAAGTTGGGATAGACCTTGTCTAAGGTAACTTTAAAAAGGTTGGGATAAACCTTGTCTA
*
8262631 AGACAATC
65 AG-CAACC
* * * *
8262639 TTAAAAAAGTTAGGATAGACCTTGTTTAAGGTAACATTTAAAAAAAGTTGGGATATACCTTGTCT
1 TTAAAAAAGTTGGGATAGACCTTGTCTAAGGTAAC-TTT-AAAAAGGTTGGGATAAACCTTGTCT
8262704 AATGCAACC
64 AA-GCAACC
* * *
8262713 TT-AAAAAGATTGGGATAAACCTTGTCTAAGGCGAACCTTTTAAAAAGGTTGGGATAAACCTTGC
1 TTAAAAAAG-TTGGGATAGACCTTGTCTAAGG-TAA-C-TTTAAAAAGGTTGGGATAAACCTTGT
8262777 CTAAGACAACC
62 CTAAG-CAACC
* *
8262788 TTAAAAAGGTTGGCATAG
1 TTAAAAAAGTTGGGATAG
8262806 TGTTGGACAA
Statistics
Matches: 193, Mismatches: 34, Indels: 22
0.78 0.14 0.09
Matches are distributed among these distances:
71 14 0.07
72 15 0.08
73 49 0.25
74 65 0.34
75 41 0.21
76 9 0.05
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (71 bp):
TTAAAAAAGTTGGGATAGACCTTGTCTAAGGTAACTTTAAAAAGGTTGGGATAAACCTTGTCTAA
GCAACC
Found at i:8263213 original size:140 final size:139
Alignment explanation
Indices: 8262799--8263215 Score: 548
Period size: 140 Copynumber: 3.0 Consensus size: 139
8262789 TAAAAAGGTT
*
8262799 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATGCATATCCCAATCCT
1 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAATCCT
* * *
8262864 TATACAAAGAGTTGGCCAAAACGCATGCCAGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGA-
66 TATACAAAGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACACTTAGGAAAGTGTC--AC
* **
8262928 GCAAAAGTGTC
129 CCAAAAGAATC
* * * * * *
8262939 GCCATAGTGTTGGACAAAGCCGACTCTTCTTTTAGCGTTGTCTTAGGCATGCATATCTCAATCTT
1 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAATCCT
* * * * *
8263004 TATACAAAAGAGTTGGCAAAAGCATATGTCGGCAAGTGTATCCTAACACTTAGGAAAGTGTCGAC
66 TATAC-AAAGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACACTTAGGAAAGTGTC-AC
8263069 CCAAAAGAATC
129 CCAAAAGAATC
* ** * *
8263080 GGCATAATGTTGGACAAAGGAAACTCTTATTTAAGCATTGTCTTAGGCATGCATATCCCAACCCT
1 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAATCCT
* * *
8263145 TATACAAAGAATTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAGCACTTAGAAAAGTGTCACCC
66 TATACAAAGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACACTTAGGAAAGTGTCA-CC
8263210 CAAAAG
130 CAAAAG
8263216 TTTCGCCTTA
Statistics
Matches: 237, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
139 1 0.00
140 121 0.51
141 115 0.49
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (139 bp):
GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCCAATCCT
TATACAAAGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCAACACTTAGGAAAGTGTCACCC
AAAAGAATC
Found at i:8263533 original size:17 final size:17
Alignment explanation
Indices: 8263511--8263548 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8263501 TTTTATTTTT
*
8263511 ATATAATTCTTT-TATAA
1 ATATAATT-TTTACATAA
8263528 ATATAATTTTTACATAA
1 ATATAATTTTTACATAA
8263545 ATAT
1 ATAT
8263549 TTTTTACCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATAATTTTTACATAA
Found at i:8266941 original size:28 final size:29
Alignment explanation
Indices: 8266903--8266960 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
8266893 AAATGTTTAC
* *
8266903 ATATAAGAAATTT-TAAAATTTAAAAAAT
1 ATATAAAAAATTTATAAAAATTAAAAAAT
*
8266931 ATATAAAAAATTTATAAAAATTAAGAAAT
1 ATATAAAAAATTTATAAAAATTAAAAAAT
8266960 A
1 A
8266961 AAAGCATGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (29 bp):
ATATAAAAAATTTATAAAAATTAAAAAAT
Found at i:8272145 original size:21 final size:20
Alignment explanation
Indices: 8272119--8272163 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
8272109 AGAAAGTTGT
8272119 TGGATAAA-GAACGATGCATGG
1 TGGATAAATGAA-GATG-ATGG
8272140 TGGATAAATTGAAGATGATGG
1 TGGATAAA-TGAAGATGATGG
8272161 TGG
1 TGG
8272164 GATTTTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 15 0.68
22 4 0.18
23 3 0.14
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24
Consensus pattern (20 bp):
TGGATAAATGAAGATGATGG
Found at i:8276135 original size:20 final size:21
Alignment explanation
Indices: 8276093--8276136 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8276083 TAGCTACAAA
*
8276093 ATTAAATACACAATACATTTT
1 ATTAAATACACAATACATATT
* *
8276114 ATTAAA-ACACATTTCATATT
1 ATTAAATACACAATACATATT
8276134 ATT
1 ATT
8276137 CTAACTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTAAATACACAATACATATT
Found at i:8280758 original size:38 final size:38
Alignment explanation
Indices: 8280699--8280772 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
8280689 CTCTACTAAG
*
8280699 TACATGTTAAGCATGTTTACTGCTAGTGTTGAATTGAA
1 TACATGTTAAGCATGTCTACTGCTAGTGTTGAATTGAA
*
8280737 TACATGTTAAGTATGTCTACTGCTAGTGTTGAATTG
1 TACATGTTAAGCATGTCTACTGCTAGTGTTGAATTG
8280773 TTCTATTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.41
Consensus pattern (38 bp):
TACATGTTAAGCATGTCTACTGCTAGTGTTGAATTGAA
Found at i:8281983 original size:7 final size:7
Alignment explanation
Indices: 8281971--8282005 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
8281961 AAAACCTCTT
8281971 CCCCTTC
1 CCCCTTC
8281978 CCCCTTC
1 CCCCTTC
8281985 CCCCTTC
1 CCCCTTC
8281992 CCCCTTC
1 CCCCTTC
8281999 CCCCTTC
1 CCCCTTC
8282006 ATTGCGACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29
Consensus pattern (7 bp):
CCCCTTC
Found at i:8282423 original size:16 final size:16
Alignment explanation
Indices: 8282402--8282433 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8282392 TCCTTCAACG
8282402 AATTGCTAATTCTAAC
1 AATTGCTAATTCTAAC
8282418 AATTGCTAATTCTAAC
1 AATTGCTAATTCTAAC
8282434 TCTAAGAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
AATTGCTAATTCTAAC
Found at i:8294827 original size:30 final size:30
Alignment explanation
Indices: 8294784--8295017 Score: 217
Period size: 30 Copynumber: 7.8 Consensus size: 30
8294774 GTTAAAATAT
*
8294784 AATTTTCAAAAAGTTTAGGGGTCAAAATTGA
1 AATTTT-ATAAAGTTTAGGGGTCAAAATTGA
* * * *
8294815 AGTTTTAGAAAGTTTAAGGGTTAAAATAT-A
1 AATTTTATAAAGTTTAGGGGTCAAAAT-TGA
* ** *
8294845 ATTTTTGGAAAGTTTAGGGGTTAAAATAT-A
1 AATTTTATAAAGTTTAGGGGTCAAAAT-TGA
* * **
8294875 ATTTTTAGAAAGTTTAGGGGTTGAAA-TGA
1 AATTTTATAAAGTTTAGGGGTCAAAATTGA
* *
8294904 AATTTTCTAAAGTTTAGGGGTCAAAAATGA
1 AATTTTATAAAGTTTAGGGGTCAAAATTGA
* *
8294934 AATTTTATAAAGTTTGGGGGTCAAAAATGA
1 AATTTTATAAAGTTTAGGGGTCAAAATTGA
*
8294964 AGTTTTATAAAGTTT-GAGGGTCAAAA-TGA
1 AATTTTATAAAGTTTAG-GGGTCAAAATTGA
**
8294993 AATTTTATAAAGTTCGGGGGTCAAA
1 AATTTTATAAAGTTTAGGGGTCAAA
8295018 TATAATTTTT
Statistics
Matches: 179, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
28 1 0.01
29 47 0.26
30 125 0.70
31 6 0.03
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (30 bp):
AATTTTATAAAGTTTAGGGGTCAAAATTGA
Found at i:8294844 original size:60 final size:60
Alignment explanation
Indices: 8294763--8295006 Score: 252
Period size: 60 Copynumber: 4.1 Consensus size: 60
8294753 TGCAAATTTG
* *
8294763 GAAAGTTTAA-GGTTAAAATATAATTTTCAAAAAGTTTAGGGGTCAAAATTGAAGTTTTA
1 GAAAGTTTAAGGGTTAAAATATAATTTTCATAAAGTTTAGGGGTCAAAATTGAAATTTTA
*** * *
8294822 GAAAGTTTAAGGGTTAAAATATAATTTTTGGAAAGTTTAGGGGTTAAAATAT-AATTTTTA
1 GAAAGTTTAAGGGTTAAAATATAATTTTCATAAAGTTTAGGGGTCAAAAT-TGAAATTTTA
* * *
8294882 GAAAGTTTAGGGGTTGAAATGA-AATTTTC-TAAAGTTTAGGGGTCAAAAATGAAATTTTA
1 GAAAGTTTAAGGGTTAAAAT-ATAATTTTCATAAAGTTTAGGGGTCAAAATTGAAATTTTA
* ** *
8294941 TAAAGTTTGGGGGTCAAAA-ATGAAGTTTT-ATAAAGTTT-GAGGGTCAAAA-TGAAATTTTA
1 GAAAGTTTAAGGGTTAAAATAT-AA-TTTTCATAAAGTTTAG-GGGTCAAAATTGAAATTTTA
*
8295000 TAAAGTT
1 GAAAGTT
8295007 CGGGGGTCAA
Statistics
Matches: 160, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
57 1 0.01
58 1 0.01
59 69 0.43
60 87 0.54
61 2 0.01
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.36
Consensus pattern (60 bp):
GAAAGTTTAAGGGTTAAAATATAATTTTCATAAAGTTTAGGGGTCAAAATTGAAATTTTA
Found at i:8295012 original size:59 final size:60
Alignment explanation
Indices: 8294784--8295017 Score: 208
Period size: 59 Copynumber: 3.9 Consensus size: 60
8294774 GTTAAAATAT
* * * * *** *
8294784 AATTTTCAAAAAGTTTAGGGGTCAAAATTGAAGTTTTAGAAAGTTTAAGGGTTAAAATAT-A
1 AATTTT-ATAAAGTTTAGGGGTCAAAAATGAAATTTTATAAAGTTCGGGGGTCAAAA-ATGA
* ** * * * ** **
8294845 ATTTTTGGAAAGTTTAGGGGTTAAAATAT-AATTTTTAGAAAGTTTAGGGGT-TGAAATGA
1 AATTTTATAAAGTTTAGGGGTCAAAA-ATGAAATTTTATAAAGTTCGGGGGTCAAAAATGA
* *
8294904 AATTTTCTAAAGTTTAGGGGTCAAAAATGAAATTTTATAAAGTTTGGGGGTCAAAAATGA
1 AATTTTATAAAGTTTAGGGGTCAAAAATGAAATTTTATAAAGTTCGGGGGTCAAAAATGA
*
8294964 AGTTTTATAAAGTTT-GAGGGTC-AAAATGAAATTTTATAAAGTTCGGGGGTCAAA
1 AATTTTATAAAGTTTAG-GGGTCAAAAATGAAATTTTATAAAGTTCGGGGGTCAAA
8295018 TATAATTTTT
Statistics
Matches: 147, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
58 4 0.03
59 76 0.52
60 61 0.41
61 6 0.04
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (60 bp):
AATTTTATAAAGTTTAGGGGTCAAAAATGAAATTTTATAAAGTTCGGGGGTCAAAAATGA
Found at i:8296205 original size:18 final size:18
Alignment explanation
Indices: 8296172--8296206 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8296162 GAGACTTTGG
*
8296172 GCAGAGGAGCAATCTCGA
1 GCAGAGGAACAATCTCGA
*
8296190 GCAGAGGAACAGTCTCG
1 GCAGAGGAACAATCTCG
8296207 GGAGCTGAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.23, G:0.34, T:0.11
Consensus pattern (18 bp):
GCAGAGGAACAATCTCGA
Found at i:8296282 original size:11 final size:11
Alignment explanation
Indices: 8296248--8296282 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8296238 GAGTCACGTG
8296248 GCTGACGTGGT
1 GCTGACGTGGT
* *
8296259 GATGACGCGGT
1 GCTGACGTGGT
8296270 GCTGACGTGGT
1 GCTGACGTGGT
8296281 GC
1 GC
8296283 ATGCTGACGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.11, C:0.20, G:0.46, T:0.23
Consensus pattern (11 bp):
GCTGACGTGGT
Found at i:8297369 original size:38 final size:37
Alignment explanation
Indices: 8297309--8297529 Score: 207
Period size: 37 Copynumber: 5.9 Consensus size: 37
8297299 TAAGATTGTT
* * *
8297309 TTAGACATGTTTATCCCAACCTTTTTTAAAGGTTGTC
1 TTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCC
* * *
8297346 TTAGATTAAGTCTATTCCAACCTTTTTTAAAGGATGCC
1 TTAGA-CAAGTCTATCCCAACCTTTTTTAAAGGTTGCC
* * * * * * *
8297384 TTAGAAAAATTTATCCCAACCTTTTTAAAAGATTACT
1 TTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCC
** *
8297421 TTAGACGGGTCTATCCCAATCTTTTTTAAAGGTT-CC
1 TTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCC
* *
8297457 TTTAGACAAGGTCTATTCCAACC-TTTTTAAATAGTTGCC
1 -TTAGACAA-GTCTATCCCAACCTTTTTTAAA-GGTTGCC
8297496 TTAGACAAGATCTATCCCAACC--TTTTAAAGGTTG
1 TTAGACAAG-TCTATCCCAACCTTTTTTAAAGGTTG
8297530 TTTTATTTAA
Statistics
Matches: 147, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
36 5 0.03
37 76 0.52
38 64 0.44
39 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.38
Consensus pattern (37 bp):
TTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCC
Done.