Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 34 of 125
Found at i:9769253 original size:15 final size:15
Alignment explanation
Indices: 9769233--9769272 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
9769223 GTTATTTTTA
9769233 ATAAAATATAAATGC
1 ATAAAATATAAATGC
* *
9769248 ATAAAATATATATGT
1 ATAAAATATAAATGC
9769263 ATAAAATATA
1 ATAAAATATA
9769273 CAATTTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (15 bp):
ATAAAATATAAATGC
Found at i:9769939 original size:15 final size:15
Alignment explanation
Indices: 9769919--9769953 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9769909 ATATATATAA
9769919 AAAAAGAGAAAAGAG
1 AAAAAGAGAAAAGAG
* *
9769934 AAAAAGGGAAAAGAT
1 AAAAAGAGAAAAGAG
9769949 AAAAA
1 AAAAA
9769954 TATATATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AAAAAGAGAAAAGAG
Found at i:9789367 original size:17 final size:17
Alignment explanation
Indices: 9789345--9789392 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
9789335 GATTAGTAAA
9789345 CATTGTCATTGCATTCC
1 CATTGTCATTGCATTCC
*
9789362 CATTGTCATTGCATTTC
1 CATTGTCATTGCATTCC
9789379 CATTGTCATTGCAT
1 CATTGTCATTGCAT
9789393 CTTAGTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (17 bp):
CATTGTCATTGCATTCC
Found at i:9791359 original size:80 final size:80
Alignment explanation
Indices: 9791225--9791424 Score: 314
Period size: 80 Copynumber: 2.5 Consensus size: 80
9791215 TTGCATCCAA
*
9791225 TGCCTAGCGGATAAACCACAAATGTGAGCCCAGCTCTAGTTGGTTTAACCAACAAATATCCGTCA
1 TGCCTAGCGGATAAACCGCAAATGTGAGCCCAGCTCTAGTTGGTTTAACCAACAAATATCCGTCA
*
9791290 ATTCCT-AGCACCCAG
66 AATCCTGA-CACCCAG
* *
9791305 TGCCTAGTGGATAAACCGCAAATGTGAGCCCAGCTCTAGTTGGTTTAACTAACAAATATCCGTCA
1 TGCCTAGCGGATAAACCGCAAATGTGAGCCCAGCTCTAGTTGGTTTAACCAACAAATATCCGTCA
9791370 AATCCTGACACCCAG
66 AATCCTGACACCCAG
* *
9791385 TGCCTAGCAGATAAACAGCGAAA-GTGAGCCCAGCTCTAGT
1 TGCCTAGCGGATAAACCGC-AAATGTGAGCCCAGCTCTAGT
9791425 CAGTTAAACT
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
80 107 0.96
81 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (80 bp):
TGCCTAGCGGATAAACCGCAAATGTGAGCCCAGCTCTAGTTGGTTTAACCAACAAATATCCGTCA
AATCCTGACACCCAG
Found at i:9794228 original size:23 final size:22
Alignment explanation
Indices: 9794183--9794237 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
9794173 ACATCAAAAT
*
9794183 AAACAACATAAATACATCATTC
1 AAACAACATAAATACAACATTC
* *
9794205 AAACATCATAAATTACAACTTTC
1 AAACAACATAAA-TACAACATTC
* *
9794228 AGACACCATA
1 AAACAACATA
9794238 TCTTGCAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.51, C:0.24, G:0.02, T:0.24
Consensus pattern (22 bp):
AAACAACATAAATACAACATTC
Found at i:9795319 original size:16 final size:16
Alignment explanation
Indices: 9795286--9795315 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9795276 TGGAAACAAT
9795286 AATAAATAAACATTTA
1 AATAAATAAACATTTA
9795302 AATAAATAAA-ATTT
1 AATAAATAAACATTT
9795316 TAAAGTATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAATAAACATTTA
Found at i:9797720 original size:80 final size:80
Alignment explanation
Indices: 9797585--9797793 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 80
9797575 ATTATGGTAA
* * * *
9797585 CCAGTGCCTATCAGATAAACTACAAATGTGAGCCCAGATCTAGTTAGTTTAACCAACAAATATCC
1 CCAGTGCCTAACGGATAAACCACAAATGTGAGCCCAGCTCTAGTTAGTTTAACCAACAAATATCC
* * * * *
9797650 TTTAATTCTTGGCAC
66 GTCAAATCCTGACAC
* * * *
9797665 CTAGTGCCTAGCGGATAAACCACAAATGTGAGCCCAGCTCTAGTTGGTTTAACCAACAAATATTC
1 CCAGTGCCTAACGGATAAACCACAAATGTGAGCCCAGCTCTAGTTAGTTTAACCAACAAATATCC
9797730 GTCAAATCCTGACAC
66 GTCAAATCCTGACAC
* *
9797745 CCAGTGCCTAACGGATAAACCACGAAA-GTGAGCCCAACTCTAGTCAGTT
1 CCAGTGCCTAACGGATAAACCAC-AAATGTGAGCCCAGCTCTAGTTAGTT
9797794 AAACTGACAA
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 108 0.97
81 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (80 bp):
CCAGTGCCTAACGGATAAACCACAAATGTGAGCCCAGCTCTAGTTAGTTTAACCAACAAATATCC
GTCAAATCCTGACAC
Found at i:9798978 original size:14 final size:15
Alignment explanation
Indices: 9798970--9798998 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9798960 CAAAAATCTC
9798970 TTCATAAAAGATTCA
1 TTCATAAAAGATTCA
9798985 TTCATAAAAG-TTCA
1 TTCATAAAAGATTCA
9798999 CTAACACATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (15 bp):
TTCATAAAAGATTCA
Found at i:9801960 original size:18 final size:18
Alignment explanation
Indices: 9801937--9802121 Score: 219
Period size: 18 Copynumber: 10.3 Consensus size: 18
9801927 CGAAAGGAAT
9801937 AGCATACTGGCTCGTTAG
1 AGCATACTGGCTCGTTAG
* *
9801955 AGCATATTGGCTCGTTTG
1 AGCATACTGGCTCGTTAG
* *
9801973 AGCATACTGGTTCGTTTG
1 AGCATACTGGCTCGTTAG
*
9801991 AGCATTCTGGCTCGCTTA-
1 AGCATACTGGCTCG-TTAG
* *
9802009 AGCATATTGGCTCATTAG
1 AGCATACTGGCTCGTTAG
* *
9802027 AGCATACTGGCTTGTTTG
1 AGCATACTGGCTCGTTAG
*
9802045 AGCATACTAGCTCGTTAG
1 AGCATACTGGCTCGTTAG
* *
9802063 AGCATATTGGCTTGTTAG
1 AGCATACTGGCTCGTTAG
* *
9802081 AGCATACTGGCTCATTTG
1 AGCATACTGGCTCGTTAG
*
9802099 AGCATACTGGCTCGTAAG
1 AGCATACTGGCTCGTTAG
9802117 AGCAT
1 AGCAT
9802122 TATTAAATCG
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
17 3 0.02
18 133 0.96
19 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (18 bp):
AGCATACTGGCTCGTTAG
Found at i:9802019 original size:54 final size:54
Alignment explanation
Indices: 9801937--9802121 Score: 266
Period size: 54 Copynumber: 3.4 Consensus size: 54
9801927 CGAAAGGAAT
*
9801937 AGCATACTGGCTCGTTAGAGCATATTGGCTCGTTTGAGCATACTGGTTCGTTTG
1 AGCATACTGGCTCGTTAGAGCATATTGGCTCGTTAGAGCATACTGGTTCGTTTG
* *
9801991 AGCATTCTGGCTCGCTTA-AGCATATTGGCTCATTAGAGCATACTGGCTT-GTTTG
1 AGCATACTGGCTCG-TTAGAGCATATTGGCTCGTTAGAGCATACTGG-TTCGTTTG
* * * *
9802045 AGCATACTAGCTCGTTAGAGCATATTGGCTTGTTAGAGCATACTGGCTCATTTG
1 AGCATACTGGCTCGTTAGAGCATATTGGCTCGTTAGAGCATACTGGTTCGTTTG
*
9802099 AGCATACTGGCTCGTAAGAGCAT
1 AGCATACTGGCTCGTTAGAGCAT
9802122 TATTAAATCG
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
53 4 0.03
54 107 0.92
55 5 0.04
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (54 bp):
AGCATACTGGCTCGTTAGAGCATATTGGCTCGTTAGAGCATACTGGTTCGTTTG
Found at i:9806337 original size:32 final size:32
Alignment explanation
Indices: 9806296--9806358 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
9806286 TTATTCAAAG
*
9806296 TTGTTATTTTATTAATTTTGTTTTGACTAAAT
1 TTGTTATTTTATTAATTTTATTTTGACTAAAT
*
9806328 TTGTTATTTTCTTAATTTTATTTTGACTAAA
1 TTGTTATTTTATTAATTTTATTTTGACTAAA
9806359 ATTATTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.08, T:0.62
Consensus pattern (32 bp):
TTGTTATTTTATTAATTTTATTTTGACTAAAT
Found at i:9811425 original size:32 final size:32
Alignment explanation
Indices: 9811379--9811453 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 32
9811369 TATTCAAAGT
*
9811379 TGTTATTTTATTAATTTTGTGTTGACTAAATA
1 TGTTATTTTATTAATTTTATGTTGACTAAATA
* *
9811411 TGTTATTTTCTTAATTTTATTTTGACTAAAATTA
1 TGTTATTTTATTAATTTTATGTTGACT-AAA-TA
9811445 T-TTATTTTA
1 TGTTATTTTA
9811454 AGTAAATAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 24 0.65
33 10 0.27
34 3 0.08
ACGTcount: A:0.28, C:0.04, G:0.08, T:0.60
Consensus pattern (32 bp):
TGTTATTTTATTAATTTTATGTTGACTAAATA
Found at i:9811904 original size:280 final size:280
Alignment explanation
Indices: 9811403--9811963 Score: 1122
Period size: 280 Copynumber: 2.0 Consensus size: 280
9811393 TTTTGTGTTG
9811403 ACTAAATATGTTATTTTCTTAATTTTATTTTGACTAAAATTATTTATTTTAAGTAAATAGGGTAA
1 ACTAAATATGTTATTTTCTTAATTTTATTTTGACTAAAATTATTTATTTTAAGTAAATAGGGTAA
9811468 TTTAGTTTAGAAGGACTCAAGCTATTTTTAGTAACCCAATTGAGTATAAATAAGGTTCTTTGGAC
66 TTTAGTTTAGAAGGACTCAAGCTATTTTTAGTAACCCAATTGAGTATAAATAAGGTTCTTTGGAC
9811533 TCAATTGAAAGATGTGCTTGATTTTTATGAGCAATTAAAGTAATTGAGCATTTATTTATTTTTCT
131 TCAATTGAAAGATGTGCTTGATTTTTATGAGCAATTAAAGTAATTGAGCATTTATTTATTTTTCT
9811598 ATTCTTTTTCTTTCAAATCGACAGTGCTCTTTCTCTGCCATTTTTATTTTCATTTCATTCTTTTG
196 ATTCTTTTTCTTTCAAATCGACAGTGCTCTTTCTCTGCCATTTTTATTTTCATTTCATTCTTTTG
9811663 CAAATTTGCCTAATTGATAT
261 CAAATTTGCCTAATTGATAT
9811683 ACTAAATATGTTATTTTCTTAATTTTATTTTGACTAAAATTATTTATTTTAAGTAAATAGGGTAA
1 ACTAAATATGTTATTTTCTTAATTTTATTTTGACTAAAATTATTTATTTTAAGTAAATAGGGTAA
9811748 TTTAGTTTAGAAGGACTCAAGCTATTTTTAGTAACCCAATTGAGTATAAATAAGGTTCTTTGGAC
66 TTTAGTTTAGAAGGACTCAAGCTATTTTTAGTAACCCAATTGAGTATAAATAAGGTTCTTTGGAC
9811813 TCAATTGAAAGATGTGCTTGATTTTTATGAGCAATTAAAGTAATTGAGCATTTATTTATTTTTCT
131 TCAATTGAAAGATGTGCTTGATTTTTATGAGCAATTAAAGTAATTGAGCATTTATTTATTTTTCT
9811878 ATTCTTTTTCTTTCAAATCGACAGTGCTCTTTCTCTGCCATTTTTATTTTCATTTCATTCTTTTG
196 ATTCTTTTTCTTTCAAATCGACAGTGCTCTTTCTCTGCCATTTTTATTTTCATTTCATTCTTTTG
9811943 CAAATTTGCCTAATTGATAT
261 CAAATTTGCCTAATTGATAT
9811963 A
1 A
9811964 TCAATCCTTC
Statistics
Matches: 281, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
280 281 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (280 bp):
ACTAAATATGTTATTTTCTTAATTTTATTTTGACTAAAATTATTTATTTTAAGTAAATAGGGTAA
TTTAGTTTAGAAGGACTCAAGCTATTTTTAGTAACCCAATTGAGTATAAATAAGGTTCTTTGGAC
TCAATTGAAAGATGTGCTTGATTTTTATGAGCAATTAAAGTAATTGAGCATTTATTTATTTTTCT
ATTCTTTTTCTTTCAAATCGACAGTGCTCTTTCTCTGCCATTTTTATTTTCATTTCATTCTTTTG
CAAATTTGCCTAATTGATAT
Found at i:9818737 original size:21 final size:20
Alignment explanation
Indices: 9818694--9818734 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 20
9818684 ATATATAATA
9818694 ATAATATATTATTATTTATT
1 ATAATATATTATTATTTATT
9818714 ATAATATTATTATTAATTTAT
1 ATAATA-TATTATT-ATTTAT
9818735 ATATCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 7 0.37
22 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATAATATATTATTATTTATT
Found at i:9818738 original size:18 final size:17
Alignment explanation
Indices: 9818680--9818738 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 17
9818670 TCTTTATATT
*
9818680 TTATATA-TA-TAATAA
1 TTATATATTATTATTAA
* *
9818695 TAATATATTATTATTTA
1 TTATATATTATTATTAA
9818712 TTATAATATTATTATTAA
1 TTAT-ATATTATTATTAA
9818730 TTTATATAT
1 -TTATATAT
9818739 CATTTGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 6 0.17
16 2 0.06
17 7 0.20
18 16 0.46
19 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATATATTATTATTAA
Found at i:9820856 original size:18 final size:18
Alignment explanation
Indices: 9820828--9820875 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
9820818 TCTTTATATT
9820828 TTATATATATAATAGT-ATA
1 TTAT-TATATAATA-TAATA
*
9820847 TTATTATATATTATAATA
1 TTATTATATAATATAATA
9820865 TTATTAT-TAAT
1 TTATTATATAAT
9820876 TTATATATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 4 0.15
18 18 0.69
19 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTATTATATAATATAATA
Found at i:9820883 original size:18 final size:21
Alignment explanation
Indices: 9820824--9820880 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
9820814 CTTTTCTTTA
9820824 TATT-TTATATA-TATAATAGT
1 TATTATTATATATTATAATA-T
9820844 ATATTATTATATATTATAATAT
1 -TATTATTATATATTATAATAT
9820866 TATTATTA-AT-TTATA
1 TATTATTATATATTATA
9820881 TATCATTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.15
20 2 0.06
21 12 0.35
22 8 0.24
23 7 0.21
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTATTATATATTATAATAT
Found at i:9823028 original size:18 final size:17
Alignment explanation
Indices: 9822966--9823028 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
9822956 TTTCTTTTCT
*
9822966 TTATATTTTATATATATAA
1 TTATATATTAT-TAT-TAA
* *
9822985 TAATATATTATTATTTA
1 TTATATATTATTATTAA
*
9823002 TTACAATATTATTATTAA
1 TTA-TATATTATTATTAA
9823020 TTTATATAT
1 -TTATATAT
9823029 CATTTGAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
17 4 0.11
18 19 0.54
19 12 0.34
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATATATTATTATTAA
Found at i:9825190 original size:26 final size:23
Alignment explanation
Indices: 9825130--9825191 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
9825120 TTCTTTTCTT
9825130 TATATTATATATTTATAATAATAA
1 TATATTAT-TATTTATAATAATAA
*
9825154 TATATTATTATTTATTATAAT-A
1 TATATTATTATTTATAATAATAA
9825176 T-TATTATTAATTTATA
1 TATATTATT-ATTTATA
9825192 TATCATTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 7 0.20
22 8 0.23
23 12 0.34
24 8 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATATTATTATTTATAATAATAA
Found at i:9825194 original size:18 final size:17
Alignment explanation
Indices: 9825133--9825194 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
9825123 TTTTCTTTAT
*
9825133 ATTATATATT-TATAATA
1 ATTATATATTAT-TATTA
* *
9825150 ATAATATATTATTATTT
1 ATTATATATTATTATTA
9825167 ATTATAATATTATTATTA
1 ATTAT-ATATTATTATTA
9825185 ATTTATATAT
1 A-TTATATAT
9825195 CATTTGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 16 0.43
18 17 0.46
19 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATATATTATTATTA
Found at i:9827287 original size:21 final size:21
Alignment explanation
Indices: 9827263--9827304 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9827253 AGAATGAACT
9827263 TTGTATAAATTTATGATTATG
1 TTGTATAAATTTATGATTATG
9827284 TTGTATAAATTTATGATTATG
1 TTGTATAAATTTATGATTATG
9827305 AACTATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (21 bp):
TTGTATAAATTTATGATTATG
Found at i:9827311 original size:21 final size:21
Alignment explanation
Indices: 9827266--9827312 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9827256 ATGAACTTTG
***
9827266 TATAAATTTATGATTATGTTG
1 TATAAATTTATGATTATGAAC
9827287 TATAAATTTATGATTATGAAC
1 TATAAATTTATGATTATGAAC
9827308 TATAA
1 TATAA
9827313 CTCCGCTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (21 bp):
TATAAATTTATGATTATGAAC
Found at i:9832511 original size:11 final size:11
Alignment explanation
Indices: 9832492--9832522 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
9832482 TTTTAAAAAA
9832492 TAATAAATTAT
1 TAATAAATTAT
*
9832503 TATTAAATTAT
1 TAATAAATTAT
9832514 TAATAAATT
1 TAATAAATT
9832523 TAAGTTTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATAAATTAT
Found at i:9832891 original size:11 final size:11
Alignment explanation
Indices: 9832835--9832898 Score: 67
Period size: 11 Copynumber: 5.8 Consensus size: 11
9832825 ATTAAAAAAA
9832835 TTGTTTTCTTAG
1 TTGTTTTCTT-G
9832847 TTGTTTTCTTG
1 TTGTTTTCTTG
* *
9832858 TT-TTTTTTTA
1 TTGTTTTCTTG
**
9832868 TTGTTTTGATG
1 TTGTTTTCTTG
*
9832879 TTATTTTCTTG
1 TTGTTTTCTTG
9832890 TTGTTTTCT
1 TTGTTTTCT
9832899 CACTATTTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
10 8 0.19
11 24 0.57
12 10 0.24
ACGTcount: A:0.06, C:0.06, G:0.14, T:0.73
Consensus pattern (11 bp):
TTGTTTTCTTG
Found at i:9833073 original size:11 final size:11
Alignment explanation
Indices: 9833051--9833110 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
9833041 TAAGTATACA
9833051 TATTTTTAAATT
1 TATTTTT-AATT
9833063 TATTTTTAATT
1 TATTTTTAATT
*
9833074 TATTTTGAATT
1 TATTTTTAATT
*
9833085 ATTTATTTTAA--
1 -TAT-TTTTAATT
*
9833096 TATTTTTTATT
1 TATTTTTAATT
9833107 TATT
1 TATT
9833111 ATATATATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
9 5 0.13
10 2 0.05
11 18 0.46
12 9 0.23
13 5 0.13
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:9833105 original size:19 final size:20
Alignment explanation
Indices: 9833083--9833124 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
9833073 TTATTTTGAA
*
9833083 TTATTTATTTTA-ATATTTT
1 TTATTTATTATATATATTTT
9833102 TTATTTATTATATATATTTT
1 TTATTTATTATATATATTTT
9833122 TTA
1 TTA
9833125 AAATTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTTATTATATATATTTT
Found at i:9833898 original size:7 final size:7
Alignment explanation
Indices: 9833886--9833910 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9833876 ATGGGCAGAT
9833886 ATGTATA
1 ATGTATA
9833893 ATGTATA
1 ATGTATA
9833900 ATGTATA
1 ATGTATA
9833907 ATGT
1 ATGT
9833911 TATTATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (7 bp):
ATGTATA
Found at i:9834974 original size:19 final size:19
Alignment explanation
Indices: 9834950--9834988 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
9834940 TTATTGAGAT
9834950 TTGGTTATTTTGTTTGGCG
1 TTGGTTATTTTGTTTGGCG
9834969 TTGGTTATTTTGTTTGGCG
1 TTGGTTATTTTGTTTGGCG
9834988 T
1 T
9834989 CGAATTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.05, G:0.31, T:0.59
Consensus pattern (19 bp):
TTGGTTATTTTGTTTGGCG
Found at i:9840284 original size:30 final size:28
Alignment explanation
Indices: 9840250--9840522 Score: 199
Period size: 30 Copynumber: 9.2 Consensus size: 28
9840240 ATTTTATTTA
*
9840250 AAAATCATATTTTAATCCTCAAACTTTTCC
1 AAAATCATATTTTAA-CCCCAAAC-TTTCC
** * * *
9840280 AAAATTTTATTTTGATCCCTAAAATTTTCC
1 AAAATCATATTTT-AACCC-CAAACTTTCC
* *
9840310 AAAATTGCAT-TTTGAACCCTAAACTTTCC
1 AAAA-T-CATATTTTAACCCCAAACTTTCC
* * * *
9840339 AAAAATTACATTTTAACCCCTAAACTATCAT
1 -AAAATCATATTTTAACCCC-AAACTTTC-C
*
9840370 AAAATCACATTTTAACCCTCAAACTTTCTC
1 AAAATCATATTTTAACCC-CAAACTTTC-C
*
9840400 AAAATCACATTTTAACCCCAAACCTTTCC
1 AAAATCATATTTTAACCCCAAA-CTTTCC
*
9840429 AAAATCATATTTTAACCCCTAAACTTTTCT
1 AAAATCATATTTTAACCCC-AAAC-TTTCC
*
9840459 AAAATCATATTTTGA-CCCAAACCTTTCC
1 AAAATCATATTTTAACCCCAAA-CTTTCC
* * *
9840487 AAAATCACATTTTTGACCCCTAAACGTTCC
1 AAAATCATA-TTTTAACCCC-AAACTTTCC
9840517 TAAAAT
1 -AAAAT
9840523 TACATTTTGA
Statistics
Matches: 198, Mismatches: 28, Indels: 33
0.76 0.11 0.13
Matches are distributed among these distances:
28 16 0.08
29 51 0.26
30 113 0.57
31 17 0.09
32 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAATCATATTTTAACCCCAAACTTTCC
Found at i:9840506 original size:59 final size:60
Alignment explanation
Indices: 9840250--9840539 Score: 256
Period size: 60 Copynumber: 4.9 Consensus size: 60
9840240 ATTTTATTTA
* * * ** * **
9840250 AAAATCATATTTT-AATCCTCAAACTTTTCCAAAATTTTATTTTGATCCCTAAAATTTTCC
1 AAAATCACATTTTGAACCCT-AAACTTTTCTAAAATTACATTTTGACCCCTAAACCTTTCC
** * * * * *
9840310 AAAATTGCATTTTGAACCCTAAACTTTCCAAAAATTACATTTTAACCCCTAAA-CTATCAT
1 AAAATCACATTTTGAACCCTAAACTTTTCTAAAATTACATTTTGACCCCTAAACCTTTC-C
* *
9840370 AAAATCACATTTT-AACCCTCAAAC-TTTCTCAAAATCACATTTTAACCCC-AAACCTTTCC
1 AAAATCACATTTTGAACCCT-AAACTTTTCT-AAAATTACATTTTGACCCCTAAACCTTTCC
* * *
9840429 AAAATCATATTTT-AACCCCTAAACTTTTCTAAAATCATATTTTGA-CCC-AAACCTTTCC
1 AAAATCACATTTTGAA-CCCTAAACTTTTCTAAAATTACATTTTGACCCCTAAACCTTTCC
* * *
9840487 AAAATCACATTTTTGACCCCTAAACGTTCCTAAAATTACATTTTGA-CCCTAAA
1 AAAATCACA-TTTTGAACCCTAAACTTTTCTAAAATTACATTTTGACCCCTAAA
9840540 TTCTCCTAAA
Statistics
Matches: 191, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
58 21 0.11
59 78 0.41
60 87 0.46
61 5 0.03
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.35
Consensus pattern (60 bp):
AAAATCACATTTTGAACCCTAAACTTTTCTAAAATTACATTTTGACCCCTAAACCTTTCC
Found at i:9840533 original size:30 final size:30
Alignment explanation
Indices: 9840288--9840549 Score: 229
Period size: 30 Copynumber: 8.8 Consensus size: 30
9840278 CCAAAATTTT
* * **
9840288 ATTTTGATCCCTAAAATTTTCC-AAAATTGC
1 ATTTTGACCCCT-AAACTTTCCTAAAATCAC
* * *
9840318 ATTTTGAACCCTAAACTTTCCAAAAATTAC
1 ATTTTGACCCCTAAACTTTCCTAAAATCAC
* * *
9840348 ATTTTAACCCCTAAACTATCATAAAATCAC
1 ATTTTGACCCCTAAACTTTCCTAAAATCAC
*
9840378 ATTTT-AACCCTCAAACTTT-CTCAAAATCAC
1 ATTTTGACCCCT-AAACTTTCCT-AAAATCAC
* *
9840408 ATTTTAACCCC-AAACCTTTCC-AAAATCAT
1 ATTTTGACCCCTAAA-CTTTCCTAAAATCAC
* * *
9840437 ATTTTAACCCCTAAACTTTTCTAAAATCAT
1 ATTTTGACCCCTAAACTTTCCTAAAATCAC
9840467 ATTTTGA-CCC-AAACCTTTCC-AAAATCAC
1 ATTTTGACCCCTAAA-CTTTCCTAAAATCAC
* *
9840495 ATTTTTGACCCCTAAACGTTCCTAAAATTAC
1 A-TTTTGACCCCTAAACTTTCCTAAAATCAC
9840526 ATTTTGA-CCCTAAA-TTCTCCTAAA
1 ATTTTGACCCCTAAACTT-TCCTAAA
9840550 CTTCATTTTT
Statistics
Matches: 197, Mismatches: 21, Indels: 29
0.80 0.09 0.12
Matches are distributed among these distances:
28 12 0.06
29 68 0.35
30 101 0.51
31 16 0.08
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (30 bp):
ATTTTGACCCCTAAACTTTCCTAAAATCAC
Found at i:9840557 original size:59 final size:56
Alignment explanation
Indices: 9840288--9840566 Score: 170
Period size: 59 Copynumber: 4.7 Consensus size: 56
9840278 CCAAAATTTT
* * *
9840288 ATTTTGATCCCTAAAATTTTCCAAAATTGCA-TTTTGAACCCTAAACTTTCCAAAAATTAC
1 ATTTTGA-CCCT-AAA-TTTCC-AAATT-CATTTTTGACCCCTAAACTTTCCTAAAATCAC
* * * * * *
9840348 ATTTTAACCCCTAAACTATCATAAAATCACATTTT-AACCCTCAAACTTT-CTCAAAATCAC
1 ATTTTGA-CCCTAAA-TTTC-CAAATTCA-TTTTTGACCCCT-AAACTTTCCT-AAAATCAC
* * * * * *
9840408 ATTTTAACCCCAAACCTTTCCAAAATCATATTTTAACCCCTAAACTTTTCTAAAATCAT
1 ATTTTGACCCTAAA--TTTCCAAATTCAT-TTTTGACCCCTAAACTTTCCTAAAATCAC
* * *
9840467 ATTTTGACCC-AAACCTTTCCAAAATCACATTTTTGACCCCTAAACGTTCCTAAAATTAC
1 ATTTTGACCCTAAA--TTTCC-AAAT-TCATTTTTGACCCCTAAACTTTCCTAAAATCAC
9840526 ATTTTGACCCTAAATTCTCCTAAACTTCATTTTTCGACCCC
1 ATTTTGACCCTAAATT-TCC-AAA-TTCATTTTT-GACCCC
9840567 ATTTTTTATT
Statistics
Matches: 180, Mismatches: 24, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
58 14 0.08
59 107 0.59
60 59 0.33
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (56 bp):
ATTTTGACCCTAAATTTCCAAATTCATTTTTGACCCCTAAACTTTCCTAAAATCAC
Found at i:9842864 original size:123 final size:123
Alignment explanation
Indices: 9842601--9843089 Score: 750
Period size: 123 Copynumber: 4.0 Consensus size: 123
9842591 ATTCTACTAT
* * * * *
9842601 ATTTCCTTTTATTTAATATCTCATATTAAAACAGAATTATTCCTTTACAAAAATATTTGGAAGGT
1 ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
* * * *
9842666 TCATTAAAACCATTATATCCTTTCCTAAAGGATATTAACATCCATGTTTTTAATATTTA
66 TTATTAAAA-CATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCA
*
9842725 ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGACGGT
1 ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
** *
9842790 TTATTAAAACATTATATTATTTCTAAAAGGATATTAACTTCCATGTTTTTAATATTCA
66 TTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCA
*
9842848 ATTTCCTTTTATTTAATATCTTATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
1 ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
*
9842913 TTATTAAAACATTATATCTTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCA
66 TTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCA
* * * *
9842971 ATTTCCTTTTATTTAATATCTCATATTAAAATGGAATTATTCCTTTAGAGAAATATATGTAAAG-
1 ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
**
9843035 TTATTAAAATGTTATATCCTTTCCAAAAGGATATTAA-TATCCATG-TTTTAATATT
66 TTATTAAAACATTATATCCTTTCCAAAAGGATATTAACT-TCCATGTTTTTAATATT
9843090 TAGTGAAATC
Statistics
Matches: 338, Mismatches: 26, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
121 11 0.03
122 40 0.12
123 220 0.65
124 67 0.20
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (123 bp):
ATTTCCTTTTATTTAATATCTCATATTAAAACGGAAATATTCCTTTAGAGAAATATATGGAAGGT
TTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCA
Found at i:9869283 original size:37 final size:38
Alignment explanation
Indices: 9869241--9869328 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
9869231 GGACACGTTC
* * *
9869241 ATGCAGCGACATTTTTGGGTGCAA-TTAAAGAATACTT
1 ATGCAGCGACAGTTCTGGATGCAATTTAAAGAATACTT
* * * *
9869278 ATGCAGTGATAGTTCTGGATGCAATTTGAAGAATATTT
1 ATGCAGCGACAGTTCTGGATGCAATTTAAAGAATACTT
*
9869316 ATGCAGCTACAGT
1 ATGCAGCGACAGT
9869329 CTTGGATACA
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
37 19 0.47
38 21 0.52
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (38 bp):
ATGCAGCGACAGTTCTGGATGCAATTTAAAGAATACTT
Found at i:9869465 original size:37 final size:38
Alignment explanation
Indices: 9869241--9869498 Score: 142
Period size: 37 Copynumber: 7.0 Consensus size: 38
9869231 GGACACGTTC
* * * * *
9869241 ATGCAGCGACATTTTTGGGTGCAA-TTAAAGAATACTT
1 ATGCAGCTACAGTTTTGGATGCAATTTGAAGAATATTT
* *
9869278 ATGCAG-TGATAGTTCTGGATGCAATTTGAAGAATATTT
1 ATGCAGCT-ACAGTTTTGGATGCAATTTGAAGAATATTT
* * * *
9869316 ATGCAGCTACAGTCTTGGATAC-ATTCCGAA-AATATTC
1 ATGCAGCTACAGTTTTGGATGCAATT-TGAAGAATATTT
* * * * * * ** * *
9869353 CTACGGCGATAGTTTCGGGCGCAATCT--AGAAGT-TTC
1 ATGCAGCTACAGTTTTGGATGCAATTTGAAGAA-TATTT
* * * * * *
9869389 ATGCAGCAACATTTTTGGGTGCAA-TTAAAGACTACTT
1 ATGCAGCTACAGTTTTGGATGCAATTTGAAGAATATTT
*
9869426 ATGCAG-TATAGTTTTGGATGCAATTTGAAGAATATTT
1 ATGCAGCTACAGTTTTGGATGCAATTTGAAGAATATTT
*
9869463 ATGCAGCTACAGTCTTGGATGC-ATTTCGAA-AATATT
1 ATGCAGCTACAGTTTTGGATGCAATTT-GAAGAATATT
9869499 CCTACGGCGA
Statistics
Matches: 162, Mismatches: 46, Indels: 26
0.69 0.20 0.11
Matches are distributed among these distances:
35 2 0.01
36 35 0.22
37 76 0.47
38 48 0.30
39 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (38 bp):
ATGCAGCTACAGTTTTGGATGCAATTTGAAGAATATTT
Found at i:9869506 original size:147 final size:149
Alignment explanation
Indices: 9869237--9869541 Score: 542
Period size: 147 Copynumber: 2.1 Consensus size: 149
9869227 TTCTGGACAC
*
9869237 GTTCATGCAGCGACATTTTTGGGTGCAATTAAAGAATACTTATGCAGTGATAGTTCTGGATGCAA
1 GTTCATGCAGCAACATTTTTGGGTGCAATTAAAGAATACTTATGCAGTGATAGTTCTGGATGCAA
9869302 TTTGAAGAATATTTATGCAGCTACAGTCTTGGATACATTCCGAAAATATTCCTACGGCGATAGTT
66 TTTGAAGAATATTTATGCAGCTACAGTCTTGGATACATTCCGAAAATATTCCTACGGCGATAGTT
9869367 TCGGGCGCAATCTAGAAGT
131 TCGGGCGCAATCTAGAAGT
* *
9869386 -TTCATGCAGCAACATTTTTGGGTGCAATTAAAGACTACTTATGCAGT-ATAGTTTTGGATGCAA
1 GTTCATGCAGCAACATTTTTGGGTGCAATTAAAGAATACTTATGCAGTGATAGTTCTGGATGCAA
* *
9869449 TTTGAAGAATATTTATGCAGCTACAGTCTTGGATGCATTTCGAAAATATTCCTACGGCGATAGTT
66 TTTGAAGAATATTTATGCAGCTACAGTCTTGGATACATTCCGAAAATATTCCTACGGCGATAGTT
9869514 TCGGGCGCAATCTAGAAGT
131 TCGGGCGCAATCTAGAAGT
*
9869533 GCTCATGCA
1 GTTCATGCA
9869542 ATAACATTAG
Statistics
Matches: 149, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
147 97 0.65
148 52 0.35
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (149 bp):
GTTCATGCAGCAACATTTTTGGGTGCAATTAAAGAATACTTATGCAGTGATAGTTCTGGATGCAA
TTTGAAGAATATTTATGCAGCTACAGTCTTGGATACATTCCGAAAATATTCCTACGGCGATAGTT
TCGGGCGCAATCTAGAAGT
Found at i:9876627 original size:29 final size:30
Alignment explanation
Indices: 9876590--9876648 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
9876580 TATGTTTTAA
*
9876590 TGTGTAATTATATACAT-AAACTTTGATTT
1 TGTGAAATTATATACATAAAACTTTGATTT
* *
9876619 TGTGAAATTTTATACATAAAATTTTGATTT
1 TGTGAAATTATATACATAAAACTTTGATTT
9876649 GATCCAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (30 bp):
TGTGAAATTATATACATAAAACTTTGATTT
Found at i:9877079 original size:18 final size:18
Alignment explanation
Indices: 9877058--9877097 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
9877048 TTTATTTTTA
9877058 TTTTTAATTTTTTAT-ATT
1 TTTTTAATTTTTT-TGATT
9877076 TTTTTAATTTTTTTGATT
1 TTTTTAATTTTTTTGATT
9877094 TTTT
1 TTTT
9877098 CTATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTTAATTTTTTTGATT
Found at i:9885319 original size:17 final size:17
Alignment explanation
Indices: 9885297--9885336 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
9885287 CTGTAGTATA
*
9885297 ATTGTCCCTGCATTATT
1 ATTGTCACTGCATTATT
* *
9885314 ATTGTCATTGCATTTTT
1 ATTGTCACTGCATTATT
9885331 ATTGTC
1 ATTGTC
9885337 GTTGCATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.53
Consensus pattern (17 bp):
ATTGTCACTGCATTATT
Found at i:9885335 original size:34 final size:34
Alignment explanation
Indices: 9885297--9885363 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
9885287 CTGTAGTATA
*
9885297 ATTGTCCCTGCAT-TATTATTGTCATTGCATTTTT
1 ATTGTCCCTGCATCT-TCATTGTCATTGCATTTTT
**
9885331 ATTGTCGTTGCATCTTCATTGTCATTGCATTTT
1 ATTGTCCCTGCATCTTCATTGTCATTGCATTTT
9885364 CATATATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.52
Consensus pattern (34 bp):
ATTGTCCCTGCATCTTCATTGTCATTGCATTTTT
Found at i:9885341 original size:17 final size:17
Alignment explanation
Indices: 9885305--9885363 Score: 82
Period size: 17 Copynumber: 3.5 Consensus size: 17
9885295 TAATTGTCCC
*
9885305 TGCATTATTATTGTCAT
1 TGCATTTTTATTGTCAT
*
9885322 TGCATTTTTATTGTCGT
1 TGCATTTTTATTGTCAT
* *
9885339 TGCATCTTCATTGTCAT
1 TGCATTTTTATTGTCAT
9885356 TGCATTTT
1 TGCATTTT
9885364 CATATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.17, C:0.15, G:0.14, T:0.54
Consensus pattern (17 bp):
TGCATTTTTATTGTCAT
Found at i:9889445 original size:4 final size:4
Alignment explanation
Indices: 9889436--9889460 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
9889426 TAAAAAATTA
9889436 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
9889461 TGTATATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:9893810 original size:96 final size:96
Alignment explanation
Indices: 9893641--9893839 Score: 344
Period size: 96 Copynumber: 2.1 Consensus size: 96
9893631 ACAACTGACC
*
9893641 TAGGGTTGAGGAAAACGACAGTCCAAGCTATAAATAGGGCCCTTTAGCACTTAGGTTTACACATC
1 TAGGTTTGAGGAAAACGACAGTCCAAGCTATAAATAGGGCCCTTTAGCACTTAGGTTTACACATC
9893706 TTTAACTTAACATTTAATTTCCTTCATAATT
66 TTTAACTTAACATTTAATTTCCTTCATAATT
* *
9893737 TAGGTTTGAGGAAAATGGCAGTCCAAGCTATAAATAGGGCCCTTTAGCACTTAGGTTTACACATC
1 TAGGTTTGAGGAAAACGACAGTCCAAGCTATAAATAGGGCCCTTTAGCACTTAGGTTTACACATC
* **
9893802 TTTAACTTAGCATTTAATTTCCTTTGTAATT
66 TTTAACTTAACATTTAATTTCCTTCATAATT
9893833 TAGGTTT
1 TAGGTTT
9893840 AGTCATTTTA
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (96 bp):
TAGGTTTGAGGAAAACGACAGTCCAAGCTATAAATAGGGCCCTTTAGCACTTAGGTTTACACATC
TTTAACTTAACATTTAATTTCCTTCATAATT
Found at i:9898575 original size:20 final size:20
Alignment explanation
Indices: 9898552--9898594 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
9898542 ACTTTTCCAA
9898552 AAAAGTAA-TTCATTTTACAG
1 AAAAGTAACTT-ATTTTACAG
*
9898572 AAAAGTAACTTATTTTCCAG
1 AAAAGTAACTTATTTTACAG
9898592 AAA
1 AAA
9898595 TCATTTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (20 bp):
AAAAGTAACTTATTTTACAG
Found at i:9903017 original size:17 final size:17
Alignment explanation
Indices: 9902972--9903024 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
9902962 ACTACAATGC
* * *
9902972 AAATGCACTAACAAATT
1 AAATGCAATGACAAATA
*
9902989 AAATGCAGTGACAAATA
1 AAATGCAATGACAAATA
*
9903006 AAATGCAATGACAACTA
1 AAATGCAATGACAAATA
9903023 AA
1 AA
9903025 TAAGATGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.55, C:0.15, G:0.11, T:0.19
Consensus pattern (17 bp):
AAATGCAATGACAAATA
Found at i:9903163 original size:21 final size:21
Alignment explanation
Indices: 9903137--9903177 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9903127 CTCGCCTTCT
*
9903137 TCTTTGTGC-TTCTTCTTCTTA
1 TCTTTGCGCTTTC-TCTTCTTA
9903158 TCTTTGCGCTTTCTCTTCTT
1 TCTTTGCGCTTTCTCTTCTT
9903178 GTCCTTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.02, C:0.27, G:0.10, T:0.61
Consensus pattern (21 bp):
TCTTTGCGCTTTCTCTTCTTA
Found at i:9905395 original size:15 final size:14
Alignment explanation
Indices: 9905366--9905404 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
9905356 GCATAGAATT
*
9905366 TAAAAGGAAACAAA
1 TAAAAGGAAAAAAA
9905380 TAAAAGTGAAAAAAA
1 TAAAAG-GAAAAAAA
9905395 TAAAAGGAAA
1 TAAAAGGAAA
9905405 TGCAAAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (14 bp):
TAAAAGGAAAAAAA
Found at i:9922478 original size:21 final size:21
Alignment explanation
Indices: 9922454--9922526 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
9922444 AAAGTTTTTA
9922454 GTATCGGTAGAAGTAAGACTT
1 GTATCGGTAGAAGTAAGACTT
9922475 GTATCGGTAGAAG--AGTCACTT
1 GTATCGGTAGAAGTAAG--ACTT
* * **
9922496 GTATCGGTACAATTATCACTT
1 GTATCGGTAGAAGTAAGACTT
9922517 GTATCGGTAG
1 GTATCGGTAG
9922527 GAGTCTGCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.05
21 41 0.95
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (21 bp):
GTATCGGTAGAAGTAAGACTT
Found at i:9925440 original size:90 final size:90
Alignment explanation
Indices: 9925316--9925489 Score: 285
Period size: 90 Copynumber: 1.9 Consensus size: 90
9925306 TAAATTCATA
* * * * *
9925316 TTCTCGATAGCTCGTGTGAGCAGCATCATTAGGGAATAGTTATATGCACAGATACCGTATCGATG
1 TTCTCAATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATG
* *
9925381 GTTGGGGTACCGCATATGTAGCGAG
66 GCTGAGGTACCGCATATGTAGCGAG
9925406 TTCTCAATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATG
1 TTCTCAATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATG
9925471 GCTGAGGTACCGCATATGT
66 GCTGAGGTACCGCATATGT
9925490 TATGAGTCCT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 77 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (90 bp):
TTCTCAATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATG
GCTGAGGTACCGCATATGTAGCGAG
Found at i:9925508 original size:90 final size:90
Alignment explanation
Indices: 9925318--9925512 Score: 284
Period size: 90 Copynumber: 2.2 Consensus size: 90
9925308 AATTCATATT
* * * * *
9925318 CTCGATAGCTCGTGTGAGCAGCATCATTAGGGAATAGTTATATGCACAGATACCGTATCGATGGT
1 CTCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATGGC
* *
9925383 TGGGGTACCGCATATGTAGCGAGTT
66 TGAGGTACCGCATATGTAGCGAGTC
*
9925408 CTCAATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATGGC
1 CTCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATGGC
*
9925473 TGAGGTACCGCATATGTTA-TGAGTC
66 TGAGGTACCGCATATG-TAGCGAGTC
*
9925498 CTCGACAGCTCGTGT
1 CTCGATAGCTCGTGT
9925513 AAGTAGCATC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
90 91 0.98
91 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (90 bp):
CTCGATAGCTCGTGTGAGCAACATCATTAGGGAACAATTATATGCACAGATACCATATCGATGGC
TGAGGTACCGCATATGTAGCGAGTC
Found at i:9927550 original size:40 final size:40
Alignment explanation
Indices: 9927495--9927623 Score: 240
Period size: 40 Copynumber: 3.2 Consensus size: 40
9927485 GCACCCACAA
9927495 TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
1 TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
* *
9927535 TTAACCTAACTTGTCACCGCATCTCTCATTGTCTTGCTTG
1 TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
9927575 TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
1 TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
9927615 TTAACCTAA
1 TTAACCTAA
9927624 TAGGTGACTA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.21, C:0.31, G:0.10, T:0.38
Consensus pattern (40 bp):
TTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTG
Found at i:9927735 original size:100 final size:100
Alignment explanation
Indices: 9927557--9927801 Score: 445
Period size: 100 Copynumber: 2.5 Consensus size: 100
9927547 GTCACCGCAT
*
9927557 CTCTCATTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTGTTAACCT
1 CTCTCACTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTGTTAACCT
*
9927622 AATAGGTGACTACAATCTCTTCTAATCCCAAGCAA
66 AATAAGTGACTACAATCTCTTCTAATCCCAAGCAA
* *
9927657 CTCTCACTATCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTCAGTATCTTGCTTGTTAACCT
1 CTCTCACTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTGTTAACCT
*
9927722 AATAAGTGGCTACAATCTCTTCTAATCCCAAGCAA
66 AATAAGTGACTACAATCTCTTCTAATCCCAAGCAA
9927757 CTCTCACTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTC
1 CTCTCACTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTC
9927802 GATGTCGGTA
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 139 1.00
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (100 bp):
CTCTCACTGTCTTGCTTGTTAACCTAACTTGTCACCGCATCTCTCACTATCTTGCTTGTTAACCT
AATAAGTGACTACAATCTCTTCTAATCCCAAGCAA
Found at i:9929020 original size:19 final size:20
Alignment explanation
Indices: 9928982--9929023 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
9928972 TAGCAATATT
9928982 TCTTTTTCTTTTCACTTTTCC
1 TCTTTTTCTTTT-ACTTTTCC
9929003 TCTTTTTCTTTT-CTTTTCC
1 TCTTTTTCTTTTACTTTTCC
9929022 TC
1 TC
9929024 ATTCATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.43
21 12 0.57
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (20 bp):
TCTTTTTCTTTTACTTTTCC
Found at i:9933357 original size:12 final size:12
Alignment explanation
Indices: 9933340--9933380 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
9933330 CAAGTTCTTT
9933340 TTCTTCTTTCTC
1 TTCTTCTTTCTC
9933352 TTCTTCCTTTC-C
1 TTCTT-CTTTCTC
9933364 TTCTTC-TTCTTC
1 TTCTTCTTTC-TC
9933376 TTCTT
1 TTCTT
9933381 GATCTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.12
11 1 0.04
12 17 0.65
13 5 0.19
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (12 bp):
TTCTTCTTTCTC
Found at i:9951822 original size:24 final size:24
Alignment explanation
Indices: 9951791--9951841 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
9951781 ATAAACAACA
*
9951791 TTAGCTCTCATGAGCCCAGAATGG
1 TTAGCTCTCACGAGCCCAGAATGG
* *
9951815 TTAGCTCTTACGAGCCTAGAATGG
1 TTAGCTCTCACGAGCCCAGAATGG
9951839 TTA
1 TTA
9951842 ACCAGTATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
TTAGCTCTCACGAGCCCAGAATGG
Found at i:9955176 original size:28 final size:29
Alignment explanation
Indices: 9955121--9955177 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
9955111 TAGTCTAACG
* *
9955121 AGAATAAGAAAAGTAGAGAAAAATCAAAA
1 AGAAAAAGAAAAATAGAGAAAAATCAAAA
9955150 AGAAAAAGAAAAAT-GAGAAGAAA-CAAAA
1 AGAAAAAGAAAAATAGAGAA-AAATCAAAA
9955178 GAAGTATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.07
Consensus pattern (29 bp):
AGAAAAAGAAAAATAGAGAAAAATCAAAA
Found at i:9955186 original size:21 final size:23
Alignment explanation
Indices: 9955153--9955197 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
9955143 ATCAAAAAGA
9955153 AAAAGAAAAATGAG-AAGA-AAC
1 AAAAGAAAAATGAGTAAGACAAC
**
9955174 AAAAGAAGTATGAGTAAGACAAC
1 AAAAGAAAAATGAGTAAGACAAC
9955197 A
1 A
9955198 TGTGAATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 4 0.20
23 4 0.20
ACGTcount: A:0.64, C:0.07, G:0.20, T:0.09
Consensus pattern (23 bp):
AAAAGAAAAATGAGTAAGACAAC
Found at i:9967930 original size:18 final size:18
Alignment explanation
Indices: 9967907--9967946 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9967897 GAAGACGGTC
*
9967907 GGCCAATGCTATAAATTA
1 GGCCAATGCTATAAATAA
9967925 GGCCAATGCTATAAATAA
1 GGCCAATGCTATAAATAA
9967943 GGCC
1 GGCC
9967947 TTTAGCACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (18 bp):
GGCCAATGCTATAAATAA
Found at i:9974572 original size:16 final size:16
Alignment explanation
Indices: 9974547--9974577 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9974537 ATAATTAACT
9974547 TTTAACCCTTTTTCAA
1 TTTAACCCTTTTTCAA
*
9974563 TTTAATCCTTTTTCA
1 TTTAACCCTTTTTCA
9974578 TTAATTAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTAACCCTTTTTCAA
Found at i:9976013 original size:15 final size:15
Alignment explanation
Indices: 9975995--9976023 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9975985 TCAAAATTTT
9975995 TTGACTCGACTCGAC
1 TTGACTCGACTCGAC
9976010 TTGACTCGACTCGA
1 TTGACTCGACTCGA
9976024 TTAAATACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGACTCGACTCGAC
Found at i:9977355 original size:13 final size:13
Alignment explanation
Indices: 9977339--9977453 Score: 54
Period size: 13 Copynumber: 8.2 Consensus size: 13
9977329 GTTCAATTTT
9977339 ATTTTAATAATAA
1 ATTTTAATAATAA
*
9977352 ATTTTAAAAATGATA
1 ATTTTAATAAT-A-A
9977367 ATTTTAATAAT-A
1 ATTTTAATAATAA
*
9977379 TTCTTTAATATTATTAAAA
1 AT-TTTAATA--A-T--AA
* *
9977398 ATATTCAATATTAA
1 AT-TTTAATAATAA
9977412 TATTTTAATAATAA
1 -ATTTTAATAATAA
* *
9977426 ATATTTATTAA-AT
1 AT-TTTAATAATAA
*
9977439 ATATTAATAATAA
1 ATTTTAATAATAA
9977452 AT
1 AT
9977454 ATTTTATAGT
Statistics
Matches: 76, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
12 8 0.11
13 25 0.33
14 19 0.25
15 14 0.18
16 2 0.03
19 8 0.11
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:9977430 original size:15 final size:15
Alignment explanation
Indices: 9977410--9977459 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
9977400 ATTCAATATT
9977410 AATATTTTAATAATA
1 AATATTTTAATAATA
9977425 AATA-TTT-AT--TA
1 AATATTTTAATAATA
*
9977436 AATATATTAATAATA
1 AATATTTTAATAATA
9977451 AATATTTTA
1 AATATTTTA
9977460 TAGTATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 6 0.21
12 2 0.07
13 4 0.14
14 3 0.10
15 14 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:9977446 original size:26 final size:25
Alignment explanation
Indices: 9977406--9977457 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
9977396 AAATATTCAA
*
9977406 TATTAATATTTTAATAATAAATATT
1 TATTAATATATTAATAATAAATATT
9977431 TATTAAATATATTAATAATAAATATT
1 TATT-AATATATTAATAATAAATATT
9977457 T
1 T
9977458 TATAGTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAATATATTAATAATAAATATT
Found at i:9977447 original size:19 final size:19
Alignment explanation
Indices: 9977383--9977447 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
9977373 ATAATATTCT
*
9977383 TTAATA-TTATTAAAAATA
1 TTAATATTTATTAAATATA
*
9977401 TTCAATATTAATATTTTAATA-A
1 TT-AATATT--TA-TTAAATATA
*
9977423 TAAATATTTATTAAATATA
1 TTAATATTTATTAAATATA
9977442 TTAATA
1 TTAATA
9977448 ATAAATATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 11
0.69 0.10 0.21
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 1 0.03
21 6 0.17
22 4 0.11
23 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAATATTTATTAAATATA
Found at i:9987287 original size:102 final size:102
Alignment explanation
Indices: 9987111--9987380 Score: 396
Period size: 102 Copynumber: 2.6 Consensus size: 102
9987101 GCGTCAATTC
* * * * *
9987111 ATGGCACCCGGTGCCTAGCGGATATACCGCGGTATGTGAGCCCAACTCTAGTTGGATTATCCAAT
1 ATGGCACCCAGTGCCTAGCGGATAAACCGCGATATGTGAGCCCAACTCTAGTTGGATTAACCAAC
9987176 GGTTTGCGCCCAGCGCTAGTCGGATAAACCGACGGTT
66 GGTTTGCGCCCAGCGCTAGTCGGATAAACCGACGGTT
* * * *
9987213 ATGGCACCCAGTGCCTAGCGGATAAACTGCGATATGTGAGCCCATCTCTGGCTGGATTAACCAAC
1 ATGGCACCCAGTGCCTAGCGGATAAACCGCGATATGTGAGCCCAACTCTAGTTGGATTAACCAAC
*
9987278 GGTTTGCGCCCAGTGCTAGTCGGATAAACCGACGGTT
66 GGTTTGCGCCCAGCGCTAGTCGGATAAACCGACGGTT
* * * * * *
9987315 ATGACACCCAGTGCCTAGCAGATAAACCACAATATGTGAGTCCAGCTCTAGTTGGATTAACCAAC
1 ATGGCACCCAGTGCCTAGCGGATAAACCGCGATATGTGAGCCCAACTCTAGTTGGATTAACCAAC
9987380 G
66 G
9987381 AATAATCCGT
Statistics
Matches: 149, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 149 1.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (102 bp):
ATGGCACCCAGTGCCTAGCGGATAAACCGCGATATGTGAGCCCAACTCTAGTTGGATTAACCAAC
GGTTTGCGCCCAGCGCTAGTCGGATAAACCGACGGTT
Found at i:9987313 original size:33 final size:33
Alignment explanation
Indices: 9987176--9987342 Score: 117
Period size: 35 Copynumber: 4.9 Consensus size: 33
9987166 ATTATCCAAT
*
9987176 GGTT-TGCGCCCAGCGCTAGTCGGATAAACCGAC
1 GGTTATGCGCCCAGTGCTAG-CGGATAAACCGAC
* *
9987209 GGTTATGGCACCCAGTGCCTAGCGGATAAACTG-C
1 GGTTAT-GCGCCCAGTG-CTAGCGGATAAACCGAC
* * * * * * *
9987243 GATATGTGAGCCCA-TCTCTGGCTGGATTAACCAAC
1 GGT-TATGCGCCCAGT-GCTAGC-GGATAAACCGAC
9987278 GGTT-TGCGCCCAGTGCTAGTCGGATAAACCGAC
1 GGTTATGCGCCCAGTGCTAG-CGGATAAACCGAC
* *
9987311 GGTTATGACACCCAGTGCCTAGCAGATAAACC
1 GGTTATG-CGCCCAGTG-CTAGCGGATAAACC
9987343 ACAATATGTG
Statistics
Matches: 102, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
33 33 0.32
34 21 0.21
35 40 0.39
36 8 0.08
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (33 bp):
GGTTATGCGCCCAGTGCTAGCGGATAAACCGAC
Found at i:9987995 original size:130 final size:132
Alignment explanation
Indices: 9987762--9988160 Score: 643
Period size: 130 Copynumber: 3.1 Consensus size: 132
9987752 TTCTTGCTCT
9987762 ATATATATAACAATTCAAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAAT
1 ATATATATAACAATTCAAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAAT
* *
9987827 GTTCAATATAATTCACATGGCAAAAAGTATTTATTTATTTATTTCTAGA-CGCC-AA-ATGCATA
66 GTTCAATATAATTCACATGGCAAAAAGTATTTATTTATTTATTTCCA-ACCACCAAATATGCATA
9987889 TCA
130 TCA
* **
9987892 ATATATATAACAATTCAAAAT-TTTCATTAATCCTTTGCATTCAACTCATTTCAACAATCTGAAA
1 ATATATATAACAATTC-AAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAA
*
9987956 TGTTCAATATAATTCACATGGCAAAAAGCATTTATTTATTTATTTCCAACCACCAAATATGCATA
65 TGTTCAATATAATTCACATGGCAAAAAGTATTTATTTATTTATTTCCAACCACCAAATATGCATA
9988021 TCA
130 TCA
9988024 ATATATATAACAATTCAAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAAT
1 ATATATATAACAATTCAAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAAT
* * *
9988089 GTTCAATATAATTCGCATGGCAAAAAG----TATTTATTTATTTCCAGCCATCAAATATGCATAT
66 GTTCAATATAATTCACATGGCAAAAAGTATTTATTTATTTATTTCCAACCACCAAATATGCATAT
9988150 CA
131 CA
9988152 ATATATATA
1 ATATATATA
9988161 TATTTCTCCA
Statistics
Matches: 252, Mismatches: 12, Indels: 12
0.91 0.04 0.04
Matches are distributed among these distances:
128 43 0.17
129 1 0.00
130 105 0.42
131 10 0.04
132 93 0.37
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (132 bp):
ATATATATAACAATTCAAATCTTTCATTAATCCTTTGTATTCAACTCATTTCAACAATCCAAAAT
GTTCAATATAATTCACATGGCAAAAAGTATTTATTTATTTATTTCCAACCACCAAATATGCATAT
CA
Found at i:9990801 original size:28 final size:28
Alignment explanation
Indices: 9990769--9990823 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
9990759 TTTTTAGCCC
* *
9990769 TTTATGT-TTTTCTTTTTATATTTATTTA
1 TTTATGTATTTTCCTTTAAT-TTTATTTA
*
9990797 TTTATTTATTTTCCTTTAATTTTATTT
1 TTTATGTATTTTCCTTTAATTTTATTT
9990824 TACTATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (28 bp):
TTTATGTATTTTCCTTTAATTTTATTTA
Found at i:9990825 original size:39 final size:39
Alignment explanation
Indices: 9990782--9990883 Score: 136
Period size: 39 Copynumber: 2.6 Consensus size: 39
9990772 ATGTTTTTCT
*
9990782 TTTTA-TATTTATTTATTTATTTATTTTCCTTTAATTTTA
1 TTTTACTATTTATTTATTTATTTATTTTCATTT-ATTTTA
*
9990821 TTTTACTATTTA-TTATTTATTCATTTTCATTTATTTTA
1 TTTTACTATTTATTTATTTATTTATTTTCATTTATTTTA
*
9990859 TCTTACTATTTATTTTATTTTATTT
1 TTTTACTATTTA-TTTA-TTTATTT
9990884 TGCTTTTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
38 17 0.31
39 23 0.42
40 9 0.16
41 6 0.11
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.71
Consensus pattern (39 bp):
TTTTACTATTTATTTATTTATTTATTTTCATTTATTTTA
Found at i:9990866 original size:38 final size:39
Alignment explanation
Indices: 9990787--9990872 Score: 129
Period size: 38 Copynumber: 2.2 Consensus size: 39
9990777 TTTCTTTTTA
* * *
9990787 TATTTATTTATTTATTTATTTTCCTTTAATTTTATTTTAC
1 TATTTA-TTATTTATTCATTTTCATTTAATTTTATCTTAC
9990827 TATTTATTATTTATTCATTTTCATTT-ATTTTATCTTAC
1 TATTTATTATTTATTCATTTTCATTTAATTTTATCTTAC
9990865 TATTTATT
1 TATTTATT
9990873 TTATTTTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 19 0.44
39 18 0.42
40 6 0.14
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (39 bp):
TATTTATTATTTATTCATTTTCATTTAATTTTATCTTAC
Found at i:9990878 original size:22 final size:21
Alignment explanation
Indices: 9990850--9990894 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
9990840 TTCATTTTCA
9990850 TTTATTTTATCTTACTATTTAT
1 TTTATTTTATCTTACT-TTTAT
* *
9990872 TTTATTTTATTTTGCTTTTAT
1 TTTATTTTATCTTACTTTTAT
9990893 TT
1 TT
9990895 ATCCTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTTTATCTTACTTTTAT
Found at i:9990892 original size:11 final size:10
Alignment explanation
Indices: 9990782--9990894 Score: 56
Period size: 10 Copynumber: 10.8 Consensus size: 10
9990772 ATGTTTTTCT
9990782 TTTTATATTTA
1 TTTTAT-TTTA
9990793 -TTTA-TTTA
1 TTTTATTTTA
*
9990801 -TTTATTTTCC
1 TTTTATTTT-A
*
9990811 TTTAATTTTA
1 TTTTATTTTA
9990821 TTTTACTATTTA
1 TTTTA-T-TTTA
*
9990833 TTATT-TATTCA
1 TT-TTAT-TTTA
9990844 TTTTCA-TTTA
1 TTTT-ATTTTA
*
9990854 TTTTATCTTA
1 TTTTATTTTA
9990864 CTATTTATTTTA
1 -T-TTTATTTTA
*
9990876 TTTTATTTTGC
1 TTTTATTTT-A
9990887 TTTTATTT
1 TTTTATTT
9990895 ATCCTACTAT
Statistics
Matches: 81, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
8 8 0.10
9 4 0.05
10 28 0.35
11 25 0.31
12 14 0.17
13 2 0.02
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:9990892 original size:38 final size:37
Alignment explanation
Indices: 9990791--9990904 Score: 119
Period size: 38 Copynumber: 3.1 Consensus size: 37
9990781 TTTTTATATT
* *
9990791 TATTTA-TTTA-TTTATTTTCCTTTAATTTTATTTTAC
1 TATTTATTTTATTTTATTTT-CTTTTATTTTATCTTAC
* *
9990827 TATTTATTATT-TATTCATTTTCATTTATTTTATCTTAC
1 TATTTATT-TTAT-TTTATTTTCTTTTATTTTATCTTAC
*
9990865 TATTTATTTTATTTTATTTTGCTTTTA-TTTATCCTAC
1 TATTTATTTTATTTTATTTT-CTTTTATTTTATCTTAC
9990902 TAT
1 TAT
9990905 CATTTTTTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
36 6 0.09
37 22 0.34
38 30 0.46
39 7 0.11
ACGTcount: A:0.22, C:0.10, G:0.01, T:0.68
Consensus pattern (37 bp):
TATTTATTTTATTTTATTTTCTTTTATTTTATCTTAC
Found at i:9993376 original size:23 final size:24
Alignment explanation
Indices: 9993350--9993399 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
9993340 TCTCACACTT
*
9993350 TTTCTTACTC-TTTTCTTTTTG-TA
1 TTTC-TACTCATTTTCGTTTTGTTA
9993373 TTTCTACTCATTTTCGTTTTGTTA
1 TTTCTACTCATTTTCGTTTTGTTA
9993397 TTT
1 TTT
9993400 TCACTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 14 0.58
24 5 0.21
ACGTcount: A:0.10, C:0.16, G:0.06, T:0.68
Consensus pattern (24 bp):
TTTCTACTCATTTTCGTTTTGTTA
Found at i:10011710 original size:17 final size:18
Alignment explanation
Indices: 10011673--10011714 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
10011663 TAACAAAATG
10011673 ATGCAGTGATAAAATAAA
1 ATGCAGTGATAAAATAAA
*
10011691 ATGCAGTGATAATA-AAA
1 ATGCAGTGATAAAATAAA
10011708 ATGCAGT
1 ATGCAGT
10011715 AAAACTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.24
Consensus pattern (18 bp):
ATGCAGTGATAAAATAAA
Found at i:10011725 original size:17 final size:17
Alignment explanation
Indices: 10011673--10011725 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
10011663 TAACAAAATG
*
10011673 ATGCAGTGATAAAATAAA
1 ATGCAGTGA-AAATTAAA
* *
10011691 ATGCAGTGATAATAAAA
1 ATGCAGTGAAAATTAAA
10011708 ATGCAGT-AAAACTTAAA
1 ATGCAGTGAAAA-TTAAA
10011725 A
1 A
10011726 AAAAATGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 3 0.10
17 17 0.59
18 9 0.31
ACGTcount: A:0.55, C:0.08, G:0.15, T:0.23
Consensus pattern (17 bp):
ATGCAGTGAAAATTAAA
Found at i:10019705 original size:17 final size:17
Alignment explanation
Indices: 10019665--10019707 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
10019655 TAATTGCAAT
*
10019665 AACAAAAGTAAACATCG
1 AACAAACGTAAACATCG
*
10019682 AACAAACGTAAATATCG
1 AACAAACGTAAACATCG
*
10019699 AATAAACGT
1 AACAAACGT
10019708 CAATTTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (17 bp):
AACAAACGTAAACATCG
Found at i:10028979 original size:7 final size:7
Alignment explanation
Indices: 10028967--10028994 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
10028957 TAAATCAAAT
10028967 GTGTTGA
1 GTGTTGA
10028974 GTGTTGA
1 GTGTTGA
10028981 GTGTTGA
1 GTGTTGA
10028988 GTGTTGA
1 GTGTTGA
10028995 ATAATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GTGTTGA
Found at i:10030512 original size:18 final size:18
Alignment explanation
Indices: 10030475--10030523 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
10030465 TATAAAAAAA
* *
10030475 TTCTTTCTTTTTTTCTTT
1 TTCTTTCTTTTTCTCATT
*
10030493 TTCTTCCTTTTTCTCATT
1 TTCTTTCTTTTTCTCATT
*
10030511 TTGTTTCTTTTTC
1 TTCTTTCTTTTTC
10030524 AAATGACTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (18 bp):
TTCTTTCTTTTTCTCATT
Found at i:10031558 original size:18 final size:15
Alignment explanation
Indices: 10031547--10031579 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
10031537 CTCTTCATTC
10031547 TCTTCTTCCTCTTTT
1 TCTTCTTCCTCTTTT
10031562 TCTTCTT-C-CTTTT
1 TCTTCTTCCTCTTTT
10031575 TCTTC
1 TCTTC
10031580 AGCAGGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 1 0.06
15 7 0.39
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTCTTCCTCTTTT
Found at i:10043560 original size:22 final size:22
Alignment explanation
Indices: 10043532--10043575 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10043522 AAGAACTTAA
10043532 CTATTTCCTCCATGTCTATATT
1 CTATTTCCTCCATGTCTATATT
10043554 CTATTTCCTCCATGTCTATATT
1 CTATTTCCTCCATGTCTATATT
10043576 TTGAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.05, T:0.50
Consensus pattern (22 bp):
CTATTTCCTCCATGTCTATATT
Found at i:10056423 original size:16 final size:16
Alignment explanation
Indices: 10056402--10056437 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10056392 GTGTACAGTA
*
10056402 TTTATTCACTTTTATT
1 TTTATTCACTATTATT
*
10056418 TTTATTCTCTATTATT
1 TTTATTCACTATTATT
10056434 TTTA
1 TTTA
10056438 ACAATGGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATTCACTATTATT
Found at i:10065730 original size:23 final size:21
Alignment explanation
Indices: 10065683--10065725 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
10065673 AAAACAAAAC
10065683 AAAACAAAAAGAAAAAGAGTA
1 AAAACAAAAAGAAAAAGAGTA
*
10065704 AAAACACAAAAG-AATAGAGTA
1 AAAACA-AAAAGAAAAAGAGTA
10065725 A
1 A
10065726 GAAAAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.72, C:0.07, G:0.14, T:0.07
Consensus pattern (21 bp):
AAAACAAAAAGAAAAAGAGTA
Found at i:10070650 original size:21 final size:21
Alignment explanation
Indices: 10070626--10070679 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
10070616 GGAGTTTTTA
* *
10070626 GTATTGGTAGAGGAGAAACTT
1 GTATTGGTAAAAGAGAAACTT
*
10070647 GTATTGGTAAAAGAGACACTT
1 GTATTGGTAAAAGAGAAACTT
*
10070668 GTATCGGTAAAA
1 GTATTGGTAAAA
10070680 ATCTGCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.07, G:0.28, T:0.28
Consensus pattern (21 bp):
GTATTGGTAAAAGAGAAACTT
Found at i:10077757 original size:21 final size:21
Alignment explanation
Indices: 10077706--10077758 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
10077696 GAGTTTTTAG
* *
10077706 TATCGGTAGAGGAGAAACTTG
1 TATCGGTAGAAGAGAAACTTA
* * **
10077727 TACCGATAGAAGAGTCACTTA
1 TATCGGTAGAAGAGAAACTTA
10077748 TATCGGTAGAA
1 TATCGGTAGAA
10077759 CTATTACTTG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (21 bp):
TATCGGTAGAAGAGAAACTTA
Found at i:10081426 original size:22 final size:20
Alignment explanation
Indices: 10081383--10081428 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
10081373 AAAGAAAAAC
*
10081383 ATAAAATAAAAAAATAACAA
1 ATAAAATAAAAAAACAACAA
*
10081403 ATAAAATACATAAAAACAATAA
1 ATAAAATA-A-AAAAACAACAA
10081425 ATAA
1 ATAA
10081429 GTAAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 1 0.05
22 13 0.59
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
ATAAAATAAAAAAACAACAA
Found at i:10083185 original size:50 final size:49
Alignment explanation
Indices: 10083131--10083301 Score: 129
Period size: 50 Copynumber: 3.4 Consensus size: 49
10083121 TCATCTTGCT
*
10083131 CCACTGTAACTTCAGCGAGATAAAATTTGCTTTAATGACTTTAATCTGAC
1 CCACTGCAACTTCAG-GAGATAAAATTTGCTTTAATGACTTTAATCTGAC
* ** ***
10083181 CCACTGCTACTTCATGG-GTATAGGATTGTG-TGTGGTTG-CTTT-ATCTTG-C
1 CCACTGCAACTTCA-GGAG-ATAAAATT-TGCT-TTAATGACTTTAATC-TGAC
*
10083230 TCCACTGCAACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTAATCTGAC
1 -CCACTGCAACTTCAG-GAGATAAA-ATTTGCTTTAATGACTTTAATCTGAC
* *
10083282 CTACTACAACTTCAGG-GATA
1 CCACTGCAACTTCAGGAGATA
10083302 TAGGATTTAG
Statistics
Matches: 93, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
49 10 0.11
50 49 0.53
51 30 0.32
52 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (49 bp):
CCACTGCAACTTCAGGAGATAAAATTTGCTTTAATGACTTTAATCTGAC
Found at i:10083251 original size:100 final size:100
Alignment explanation
Indices: 10083074--10083309 Score: 332
Period size: 100 Copynumber: 2.3 Consensus size: 100
10083064 GGAAGATAGG
* *
10083074 ATCTGACCCACTGCAACTTCAGGGGTATAAGATTTGGTATGGTAGCTTCATCTTGCTCCACTGTA
1 ATCTGACCCACTGCAACTTCA-GGGTATAGGATTTGGTATGGTAGCTTCATCTTGCTCCACTGCA
*
10083139 ACTTCAGCGAGATAAA-ATTTGCTTTAATGACTTTA
65 ACTTCAGAGAGATAAAGATTTGCTTTAATGACTTTA
* * * *
10083174 ATCTGACCCACTGCTACTTCATGGGTATAGGA-TTGTGTGTGGTTGCTTTATCTTGCTCCACTGC
1 ATCTGACCCACTGCAACTTCA-GGGTATAGGATTTG-GTATGGTAGCTTCATCTTGCTCCACTGC
*
10083238 AACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTA
64 AACTTCAGAGAGATAAAGATTTGCTTTAATGACTTTA
* *
10083275 ATCTGACCTACTACAACTTCAGGGATATAGGATTT
1 ATCTGACCCACTGCAACTTCAGGG-TATAGGATTT
10083310 AGGGTTGTAA
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
99 3 0.03
100 72 0.60
101 43 0.36
102 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (100 bp):
ATCTGACCCACTGCAACTTCAGGGTATAGGATTTGGTATGGTAGCTTCATCTTGCTCCACTGCAA
CTTCAGAGAGATAAAGATTTGCTTTAATGACTTTA
Found at i:10083352 original size:101 final size:99
Alignment explanation
Indices: 10083074--10083343 Score: 278
Period size: 100 Copynumber: 2.7 Consensus size: 99
10083064 GGAAGATAGG
* * * * * * *
10083074 ATCTGACCCACTGCAACTTCAGGGGTATAAGATT-TGGTATGGTAGCTTCATCTTGCTCCACTGT
1 ATCTGACCCACTACAACTTCATGGGTATAGGATTGTGG-GTGGTAACTTCATCAT-CTCCACTGC
*
10083138 AACTTCAGCGAGATAAAATTTGCTTTAATGACTTTA
64 AACTTCAGAGAGATAAAATTTGCTTTAATGACTTTA
* * * ** * *
10083174 ATCTGACCCACTGCTACTTCATGGGTATAGGATTGTGTGTGGTTGCTTTATCTTGCTCCACTGCA
1 ATCTGACCCACTACAACTTCATGGGTATAGGATTGTGGGTGGTAACTTCATCAT-CTCCACTGCA
*
10083239 ACTTCAGAGAGATAAAGATTTGCTTTCATGACTTTA
65 ACTTCAGAGAGATAAA-ATTTGCTTTAATGACTTTA
* *
10083275 ATCTGACCTACTACAACTTCA-GGGATATAGGATT-TAGGGTTGTAACTTCACTCCAT-TCCACT
1 ATCTGACCCACTACAACTTCATGGG-TATAGGATTGT-GGGTGGTAACTTCA-T-CATCTCCACT
10083337 GCAACTT
62 GCAACTT
10083344 GAAGGAGATT
Statistics
Matches: 145, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
100 73 0.50
101 69 0.48
102 1 0.01
103 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (99 bp):
ATCTGACCCACTACAACTTCATGGGTATAGGATTGTGGGTGGTAACTTCATCATCTCCACTGCAA
CTTCAGAGAGATAAAATTTGCTTTAATGACTTTA
Found at i:10090719 original size:17 final size:17
Alignment explanation
Indices: 10090697--10090732 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10090687 TTGAGTTTGG
10090697 ATTTATCTTAAAATTAA
1 ATTTATCTTAAAATTAA
* *
10090714 ATTTATTTTTAAATTAA
1 ATTTATCTTAAAATTAA
10090731 AT
1 AT
10090733 AATAAGAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATCTTAAAATTAA
Found at i:10091605 original size:29 final size:29
Alignment explanation
Indices: 10091571--10091681 Score: 86
Period size: 30 Copynumber: 3.7 Consensus size: 29
10091561 TTCTTACTGC
10091571 TTTATAAAATTTTATATTTTTTCTATATT
1 TTTATAAAATTTTATATTTTTTCTATATT
* *
10091600 TCTAT-ATATTTTATAAATTTATTTCTA-ATT
1 TTTATAAAATTTTAT--ATTT-TTTCTATATT
* *
10091630 TTTAATAAAA-TTTAAATATATTT-TATAGTT
1 TTT-ATAAAATTTTATAT-TTTTTCTATA-TT
*
10091660 TTTATTAAATTTTAATATTTTT
1 TTTATAAAATTTT-ATATTTTT
10091682 ATTTTTTATT
Statistics
Matches: 63, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
28 10 0.16
29 15 0.24
30 21 0.33
31 15 0.24
32 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTATAAAATTTTATATTTTTTCTATATT
Found at i:10091619 original size:19 final size:18
Alignment explanation
Indices: 10091571--10091619 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
10091561 TTCTTACTGC
*
10091571 TTTATAAAATTTTATATTT
1 TTTAT-AAATTTTATATAT
* *
10091590 TTTCTATATTTCTATATAT
1 TTTATAAATTT-TATATAT
10091609 TTTATAAATTT
1 TTTATAAATTT
10091620 ATTTCTAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATAAATTTTATATAT
Found at i:10091626 original size:23 final size:23
Alignment explanation
Indices: 10091596--10091643 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
10091586 ATTTTTTCTA
10091596 TATTTCTATATATTTT-AT-AAATT
1 TATTTCTA-AT-TTTTAATAAAATT
10091619 TATTTCTAATTTTTAATAAAATT
1 TATTTCTAATTTTTAATAAAATT
10091642 TA
1 TA
10091644 AATATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 4 0.17
23 15 0.65
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTTCTAATTTTTAATAAAATT
Found at i:10102677 original size:27 final size:28
Alignment explanation
Indices: 10102616--10102677 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 28
10102606 ATTACTTATT
* * **
10102616 TATTTTAAGATTTTATAATTTTTTTTGA
1 TATTATAAGATTTTATAACTTTAATTGA
*
10102644 TA-AATAAGATTTTATAACTTTAATT-A
1 TATTATAAGATTTTATAACTTTAATTGA
10102670 TATTATAA
1 TATTATAA
10102678 TTATATAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
26 3 0.11
27 22 0.81
28 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (28 bp):
TATTATAAGATTTTATAACTTTAATTGA
Found at i:10103594 original size:43 final size:42
Alignment explanation
Indices: 10103485--10104031 Score: 148
Period size: 43 Copynumber: 12.7 Consensus size: 42
10103475 AATCATACTA
* * * *
10103485 GCACATAAGTGCATCATCAGATAAATCGACGCAATTATACTG
1 GCACATAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * * * * *
10103527 GCACGTAAGTGTATTATCGGATAAACCGAAGCAACTACATTG
1 GCACATAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
** * * *
10103569 GCACATACAGTGCATCATTTGATAAAACGAAGCAAATATAAC-A
1 GCACATA-AGTGCATCATCAGATAAAACGAAGCAACTA-CACTG
* * * ** * * *
10103612 GCACACACATTGCATCATCGGATAAATTGAAGCAAATATACTA
1 GCACATA-AGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * * * * * * * *
10103655 ACATATACACTACATCATCGGATAAATCGAAGCAAATATACCG
1 GCACATA-AGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * ** * ** * * *
10103698 GCACACAAAGTTCATCATTGGATAAACCGAAAAAAAATATACTC
1 GCACA-TAAGTGCATCATCAGATAAAACG-AAGCAACTACACTG
* * * * * * * *
10103742 ACACACAAAGTGCACCATCAAATAAACCAAAGAAACTATACTG
1 GCACA-TAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * * * * * * *
10103785 GCACACAAAGTGCATCATCGGATATACCGAAACAAATATATTG
1 GCACA-TAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * ** * * *
10103828 GCACACATAGTGCATCATCGGATAAATTGAAGCAAATATATTG
1 GCACATA-AGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * * * * * * *
10103871 GACCACA-AAGTGCAACATCGGATAAACCAAAGCAATTATAATA
1 G--CACATAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
* * * * * * *
10103914 GCACACACAGTGCATCATCAGA-AAATTCAAAGAAAATATATTG
1 GCACATA-AGTGCATCATCAGATAAA-ACGAAGCAACTACACTG
* * *
10103957 GCACACAAAGTACATCATCAGAT-AAACTGAAGCAACTATACTG
1 GCACA-TAAGTGCATCATCAGATAAAAC-GAAGCAACTACACTG
* * *
10104000 GCACACACAGTGCATCATCGGATAAACCGAAG
1 GCACATA-AGTGCATCATCAGATAAAACGAAG
10104032 GATCACTTGT
Statistics
Matches: 394, Mismatches: 95, Indels: 31
0.76 0.18 0.06
Matches are distributed among these distances:
41 4 0.01
42 48 0.12
43 299 0.76
44 39 0.10
45 4 0.01
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (42 bp):
GCACATAAGTGCATCATCAGATAAAACGAAGCAACTACACTG
Found at i:10103645 original size:86 final size:86
Alignment explanation
Indices: 10103542--10104031 Score: 216
Period size: 86 Copynumber: 5.7 Consensus size: 86
10103532 TAAGTGTATT
* * ** * * **
10103542 ATCGGATAAACCGAAGCAACTACATTGGCACATACAGTGCATCATTTGATAAAACGAAGCAAATA
1 ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAGCAAATA
*
10103607 TAACAGCACACACA-TTGCATC
66 TAACAGCACACAAAGTT-CATC
** * * *
10103628 ATCGGATAAATTGAAGCAAATATACTAACATATACACTACATCATCGGATAAATCGAAGCAAATA
1 ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAGCAAATA
* *
10103693 TACCGGCACACAAAGTTCATC
66 TAACAGCACACAAAGTTCATC
* ** * * * * * * * ** * *
10103714 ATTGGATAAACCGAAAAAAAATATACTCACACACAAAGTGCACCATCAAATAAACCAAAG-AAAC
1 ATCGGATAAACCG-AAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAGCAAA-
* *
10103778 TAT-ACTGGCACACAAAGTGCATC
64 TATAAC-AGCACACAAAGTTCATC
* * * * ** * * * * **
10103801 ATCGGATATACCGAAACAAATATATTGGCACACATAGTGCATCATCGGATAAATTGAAGCAAATA
1 ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAGCAAATA
** * * *
10103866 T-ATTGGACCACAAAGTGCAAC
66 TAACAGCA-CACAAAGTTCATC
* * * * * * * * * * * *
10103887 ATCGGATAAACCAAAGCAATTATAATAGCACACACAGTGCATCATCAGA-AAATTCAAAGAAAAT
1 ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAA-ACGAAGCAAAT
*** *
10103951 ATATTGGCACACAAAGTACATC
65 ATAACAGCACACAAAGTTCATC
* * * * ** * * * *
10103973 ATCAGATAAACTGAAGCAACTATACTGGCACACACAGTGCATCATCGGATAAACCGAAG
1 ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAG
10104032 GATCACTTGT
Statistics
Matches: 319, Mismatches: 76, Indels: 18
0.77 0.18 0.04
Matches are distributed among these distances:
85 5 0.02
86 240 0.75
87 74 0.23
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.20
Consensus pattern (86 bp):
ATCGGATAAACCGAAGCAAATACACTAACACATACACTACATCATCGGATAAAACGAAGCAAATA
TAACAGCACACAAAGTTCATC
Found at i:10103926 original size:129 final size:129
Alignment explanation
Indices: 10103452--10104027 Score: 441
Period size: 129 Copynumber: 4.5 Consensus size: 129
10103442 AACATCGTAA
* * * * * * *
10103452 TGCATTATCGGATAACATCGAA-C-AATCATACTAGCACA-TAAGTGCATCATCAGATAAATCGA
1 TGCATCATCGGATAA-ACCGAAGCAAAT-ATACTGGCACACAAAGTGCATCATCGGATAAACCAA
* * * ** * * * * * * *
10103514 CGCAATTATACTGGCACGTA-AGTGTATTATCGGATAAACCGAAGCAACTACATTGGCACATACA
64 AGCAAATATACTAGCACACACAGTGCATCATCGGATAAACCGAAACAAATATATTGGCACACAAA
10103578 G
129 G
** * * * * ***
10103579 TGCATCATTTGATAAAACGAAGCAAATATAAC-AGCACACACATTGCATCATCGGATAAATTGAA
1 TGCATCATCGGATAAACCGAAGCAAATAT-ACTGGCACACAAAGTGCATCATCGGATAAACCAAA
* * * * * * * **
10103643 GCAAATATACTAACATATACACTACATCATCGGATAAATCGAAGCAAATATACCGGCACACAAAG
65 GCAAATATACTAGCACACACAGTGCATCATCGGATAAACCGAAACAAATATATTGGCACACAAAG
* * ** ** * **
10103708 TTCATCATTGGATAAACCGAAAAAAAATATACTCACACACAAAGTGCACCATCAAATAAACCAAA
1 TGCATCATCGGATAAACCG-AAGCAAATATACTGGCACACAAAGTGCATCATCGGATAAACCAAA
* * * *
10103773 G-AAACTATACTGGCACACAAAGTGCATCATCGGATATACCGAAACAAATATATTGGCACACATA
65 GCAAA-TATACTAGCACACACAGTGCATCATCGGATAAACCGAAACAAATATATTGGCACACAAA
10103837 G
129 G
** * *
10103838 TGCATCATCGGATAAATTGAAGCAAATATATTGG-ACCACAAAGTGCAACATCGGATAAACCAAA
1 TGCATCATCGGATAAACCGAAGCAAATATACTGGCA-CACAAAGTGCATCATCGGATAAACCAAA
* * * * *
10103902 GCAATTATAATAGCACACACAGTGCATCATCAGA-AAATTC-AAAGAAAATATATTGGCACACAA
65 GCAAATATACTAGCACACACAGTGCATCATCGGATAAA-CCGAAA-CAAATATATTGGCACACAA
10103965 AG
128 AG
* * * * *
10103967 TACATCATCAGATAAACTGAAGCAACTATACTGGCACACACAGTGCATCATCGGATAAACC
1 TGCATCATCGGATAAACCGAAGCAAATATACTGGCACACAAAGTGCATCATCGGATAAACC
10104028 GAAGGATCAC
Statistics
Matches: 354, Mismatches: 82, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
126 5 0.01
127 21 0.06
128 44 0.12
129 188 0.53
130 96 0.27
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.21
Consensus pattern (129 bp):
TGCATCATCGGATAAACCGAAGCAAATATACTGGCACACAAAGTGCATCATCGGATAAACCAAAG
CAAATATACTAGCACACACAGTGCATCATCGGATAAACCGAAACAAATATATTGGCACACAAAG
Found at i:10105772 original size:2 final size:2
Alignment explanation
Indices: 10105765--10105808 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
10105755 ATTTGTAATA
10105765 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10105807 AT
1 AT
10105809 CATCCATCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10107512 original size:24 final size:25
Alignment explanation
Indices: 10107448--10107512 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
10107438 ATCCAGAGAT
* *
10107448 TTAGCTCATACGAGCCCATATAGAG
1 TTAGCTCTTACGAGCCCAGATAGAG
*
10107473 TTAGCTCTTACAAGCCCAGATAG-G
1 TTAGCTCTTACGAGCCCAGATAGAG
*
10107497 TTAGCTCTTATGAGCC
1 TTAGCTCTTACGAGCC
10107513 TAGACTGAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (25 bp):
TTAGCTCTTACGAGCCCAGATAGAG
Found at i:10112673 original size:5 final size:5
Alignment explanation
Indices: 10112663--10112704 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
10112653 TCATACAACT
10112663 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
1 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
10112705 TAGTCGAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (5 bp):
TTCTA
Found at i:10116636 original size:43 final size:43
Alignment explanation
Indices: 10116572--10116966 Score: 421
Period size: 43 Copynumber: 9.2 Consensus size: 43
10116562 CTGGAAAAAT
* * * *
10116572 GCCGCTAAAGAACATGATCTTTAACGGTGCTTCTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* * **
10116615 GCCGCTAAAGAACATGGTCTTTAGCGGTGCTTCTCTTACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
*
10116658 GCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* *** *
10116701 GCCGTTAAAGAACATGGTCTTTAGTAACGCTTTTCCCACAAAT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
*
10116744 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCTCAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* **
10116787 GCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTGTCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
** * * ** * *
10116830 GCCATTAAAGACCATGGTCTTTAGCAGATCTTTTGCCACAAAT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* ** * * **
10116873 GCCACTAAAGAACACCGTCTTTAGCAGCGTTTTTCATACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* * * * * * *
10116916 GCTGGTATAGAACATGATTTTTAGCGACGTTTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
*
10116959 GCCACTAA
1 GCCGCTAA
10116967 CATTAACAGA
Statistics
Matches: 292, Mismatches: 60, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 292 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:10116740 original size:129 final size:129
Alignment explanation
Indices: 10116577--10116962 Score: 470
Period size: 129 Copynumber: 3.0 Consensus size: 129
10116567 AAAATGCCGC
* * * * * *
10116577 TAAAGAACATGATCTTTAACGGTGCTTCTCCCACAAACGCCGCTAAAGAACATGGTCTTTAGCGG
1 TAAAGAACATGGTCTTTAGCAGAGCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCGG
* * * *
10116642 TGCTTCTCTTACAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGT
66 CGCTTTTCATACAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCAT
*
10116706 TAAAGAACATGGTCTTTAGTA-ACGCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCG
1 TAAAGAACATGGTCTTTAGCAGA-GCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCG
* * * **
10116770 GCGCTTTTCCCT-CAAACGCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTGTCACAAACGCCA
65 GCGCTTTT-CATACAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCA
10116834 T
129 T
* * * * ** *
10116835 TAAAGACCATGGTCTTTAGCAGATCTTTTGCCACAAATGCCACTAAAGAACACCGTCTTTAGCAG
1 TAAAGAACATGGTCTTTAGCAGAGCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCGG
* * * * * * *
10116900 CGTTTTTCATACAAACGCTGGTATAGAACATGATTTTTAGCGACGTTTTTCCCACAAACGCCA
66 CGCTTTTCATACAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCA
10116963 CTAACATTAA
Statistics
Matches: 218, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
128 2 0.01
129 213 0.98
130 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (129 bp):
TAAAGAACATGGTCTTTAGCAGAGCTTTTCCCACAAATGCCGCTAAAGAACATGGTCTTTAGCGG
CGCTTTTCATACAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCAT
Found at i:10120124 original size:40 final size:39
Alignment explanation
Indices: 10120080--10120205 Score: 135
Period size: 41 Copynumber: 3.1 Consensus size: 39
10120070 ATTTATGGGA
*
10120080 AAACGCCGCTATTGCTTAATCATTAGCGGCGTTTTCCCAT
1 AAACGCCGCTATTGCTTAA-CTTTAGCGGCGTTTTCCCAT
* * *
10120120 AAACGTCGCTATTACTTAACTTTTAGTGGCGTTTTTCCCAT
1 AAACGCCGCTATTGCTTAAC-TTTAGCGGCG-TTTTCCCAT
* * * *
10120161 AAACGCCGCTACTGCTTTACCTTTTGCGACGTTTTCCCCAT
1 AAACGCCGCTATTGC-TTAACTTTAGCGGCGTTTT-CCCAT
10120202 AAAC
1 AAAC
10120206 ACCGTTAATG
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 29 0.41
41 37 0.52
42 4 0.06
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (39 bp):
AAACGCCGCTATTGCTTAACTTTAGCGGCGTTTTCCCAT
Found at i:10120171 original size:41 final size:40
Alignment explanation
Indices: 10120080--10120171 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
10120070 ATTTATGGGA
*
10120080 AAACGCCGCTATTGCTTAATCATTAGCGGCGTTTTCCCAT
1 AAACGCCGCTATTACTTAATCATTAGCGGCGTTTTCCCAT
* * *
10120120 AAACGTCGCTATTACTTAA-CTTTTAGTGGCGTTTTTCCCAT
1 AAACGCCGCTATTACTTAATC-ATTAGCGGCG-TTTTCCCAT
10120161 AAACGCCGCTA
1 AAACGCCGCTA
10120172 CTGCTTTACC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.02
40 25 0.56
41 19 0.42
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (40 bp):
AAACGCCGCTATTACTTAATCATTAGCGGCGTTTTCCCAT
Found at i:10121653 original size:60 final size:57
Alignment explanation
Indices: 10121571--10121702 Score: 133
Period size: 60 Copynumber: 2.3 Consensus size: 57
10121561 TTTAATAGTT
* * * * *
10121571 TGAGTGAATTACCTCTTGAATATTACATTAATATATA-TATATATTAGTATAAGAGGAGA-C
1 TGAGTCAATTAACTATTAAATATT-CATTAATATACATTAT-TATTA-TAT-A-AGGAGATC
* *
10121631 TGAGTCAATTAACTATTAAATATTGATTAATATACATTATTATTATATAAGGAGATT
1 TGAGTCAATTAACTATTAAATATTCATTAATATACATTATTATTATATAAGGAGATC
*
10121688 TGAGTCAAATAACTA
1 TGAGTCAATTAACTA
10121703 ATTTCATATG
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
56 6 0.10
57 15 0.24
58 3 0.05
59 15 0.24
60 23 0.37
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.38
Consensus pattern (57 bp):
TGAGTCAATTAACTATTAAATATTCATTAATATACATTATTATTATATAAGGAGATC
Found at i:10122996 original size:81 final size:81
Alignment explanation
Indices: 10122873--10123179 Score: 363
Period size: 81 Copynumber: 3.8 Consensus size: 81
10122863 ATGGGAAAAC
* * ** * *
10122873 GCCGCTATTGCT-TAACCTTTAGCGGCATTTTTCCCATAAACGCTGCTAATGCTCTGACCTTTAG
1 GCCGCTATTACTCTGACCTTTAGCGGC-GCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAG
10122937 TGGCGTTTTTCATAAAT
65 TGGCGTTTTTCATAAAT
* *
10122954 GCTGCTATTACTCTGACCTTTAGTGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGT
1 GCCGCTATTACTCTGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGT
* * *
10123019 TGCGCTTTCTCATAAAC
66 GGCG-TTTTTCATAAAT
* * * * * * *
10123036 CCCGCTAATGCTCTGACGTTTAGCGTCGCTTTCTCATAAACGTC-CTAATGCTCTGACCTTTAGC
1 GCCGCTATTACTCTGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGT
10123100 GGC-TCTTTCTCATAAAT
66 GGCGT-TTT-TCATAAAT
*
10123117 GCCGC--TTAGCTCTGATCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAG
1 GCCGCTATTA-CTCTGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAG
10123180 CGACACTTTT
Statistics
Matches: 190, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.01
80 32 0.17
81 98 0.52
82 58 0.31
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.35
Consensus pattern (81 bp):
GCCGCTATTACTCTGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGT
GGCGTTTTTCATAAAT
Found at i:10123009 original size:41 final size:41
Alignment explanation
Indices: 10122869--10123218 Score: 388
Period size: 41 Copynumber: 8.6 Consensus size: 41
10122859 GTTTATGGGA
* * ** *
10122869 AAACGCCGCTATTGCT-TAACCTTTAGCGGCATTTTTCCCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGC-GCTTTCTCAT
* * *
10122910 AAACGCTGCTAATGCTCTGACCTTTAGTGGCG-TTTTTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * * * *
10122950 AAATGCTGCTATTACTCTGACCTTTAGTGGCGCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
**
10122991 AAACGCCGCTAATGCTCTGACCTTTAGTTGCGCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * *
10123032 AAACCCCGCTAATGCTCTGACGTTTAGCGTCGCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* *
10123073 AAACGTC-CTAATGCTCTGACCTTTAGCGGCTCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * *
10123113 AAATGCCGCTTA-GCTCTGATCTTTAGCGGCGCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* *
10123153 AAACGCCGCTAATGCTCTGACCTTTAGCGACACTTT-TCCTAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCT-C-AT
* *
10123195 AAACGCCGCTATTGCT-TTACCTTT
1 AAACGCCGCTAATGCTCTGACCTTT
10123219 TGCAGCGTTT
Statistics
Matches: 265, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
40 107 0.40
41 129 0.49
42 29 0.11
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (41 bp):
AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
Found at i:10123247 original size:40 final size:39
Alignment explanation
Indices: 10123195--10123308 Score: 174
Period size: 40 Copynumber: 2.8 Consensus size: 39
10123185 CTTTTCCTAT
10123195 AAACGCCGCTATTGCTTTACCTTTTGCAGCGTTTATGGAA
1 AAACG-CGCTATTGCTTTACCTTTTGCAGCGTTTATGGAA
* *
10123235 AAACGCAGCTATTGATTTACCTTTTGCGGCGTTTATGGAA
1 AAACGC-GCTATTGCTTTACCTTTTGCAGCGTTTATGGAA
*
10123275 AAACGTCGCTATTGCTTTACCTTTTGCAACGTTT
1 AAACG-CGCTATTGCTTTACCTTTTGCAGCGTTT
10123309 TCTGTCCAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 65 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (39 bp):
AAACGCGCTATTGCTTTACCTTTTGCAGCGTTTATGGAA
Found at i:10123844 original size:22 final size:22
Alignment explanation
Indices: 10123794--10123845 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
10123784 AGATTTTTAA
*
10123794 ATTTTTTAAAATATAAATTATG
1 ATTTTTAAAAATATAAATTATG
* *
10123816 ATATTTAAAAATAT-ATTTATTG
1 ATTTTTAAAAATATAAATTA-TG
10123838 ATTTTTAA
1 ATTTTTAA
10123846 TTTAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
ATTTTTAAAAATATAAATTATG
Found at i:10124408 original size:18 final size:18
Alignment explanation
Indices: 10124385--10124423 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
10124375 CCTAGGGTTA
*
10124385 AGGTTTTTTAATTTTGTT
1 AGGTTTATTAATTTTGTT
*
10124403 AGGTTTATTGATTTTGTT
1 AGGTTTATTAATTTTGTT
10124421 AGG
1 AGG
10124424 GTTAGGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.23, T:0.59
Consensus pattern (18 bp):
AGGTTTATTAATTTTGTT
Found at i:10132059 original size:169 final size:169
Alignment explanation
Indices: 10131780--10132118 Score: 633
Period size: 169 Copynumber: 2.0 Consensus size: 169
10131770 GAAATAAAAT
*
10131780 TTATTATTGTAGCTTCATTCCATTCCATTGCAACTTCAGGAGATTGAGAGTCGCTATCGTAGTCT
1 TTATTATTGCAGCTTCATTCCATTCCATTGCAACTTCAGGAGATTGAGAGTCGCTATCGTAGTCT
*
10131845 TTGATTCGATCTACTAACACTTCAAGGATATAGGATTTGGTGTTGAAGCTTCACTCCATTTCGTT
66 TTGATTCGATCTACTAACACTTCAAGGATATAGGATTTGGTGTTGAAGCTTCACTCCATTTCATT
*
10131910 GCAACTTCAGAGAGATTGAGATTCGCTTCTGTGAGATGG
131 GCAACTTCAAAGAGATTGAGATTCGCTTCTGTGAGATGG
*
10131949 TTATTATTGCAGCTTCATTCCATTCCATTGCAACTTCAGGAGATTGAGAGTCGTTATCGTAGTCT
1 TTATTATTGCAGCTTCATTCCATTCCATTGCAACTTCAGGAGATTGAGAGTCGCTATCGTAGTCT
*
10132014 TTGATTCGATCTACTAACACTTCAAGGATATAGGATTTGGTGTTGAAGCTTCACTCCGTTTCATT
66 TTGATTCGATCTACTAACACTTCAAGGATATAGGATTTGGTGTTGAAGCTTCACTCCATTTCATT
10132079 GCAACTTCAAAGAGATTGAGATTCGCTTCTGTGAGATGG
131 GCAACTTCAAAGAGATTGAGATTCGCTTCTGTGAGATGG
10132118 T
1 T
10132119 AGCTTTAATC
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
169 165 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (169 bp):
TTATTATTGCAGCTTCATTCCATTCCATTGCAACTTCAGGAGATTGAGAGTCGCTATCGTAGTCT
TTGATTCGATCTACTAACACTTCAAGGATATAGGATTTGGTGTTGAAGCTTCACTCCATTTCATT
GCAACTTCAAAGAGATTGAGATTCGCTTCTGTGAGATGG
Found at i:10132259 original size:42 final size:42
Alignment explanation
Indices: 10132145--10132742 Score: 683
Period size: 42 Copynumber: 14.4 Consensus size: 42
10132135 TCTTGATTTA
* * *
10132145 GGGGTAAAAGATTGGATTG-TGGCTTCAATCTGCCCCTATTGACTTA
1 GGGGTAAGAGATTGGA-TGATGTCTTCAATCTGCCCC-A-TGA--TC
*
10132191 GGGGTAA-AGATTGGATGGTAG-CTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGAT-GTCTTCAATCTGCCCCATGATC
* * *
10132232 GAGGTAAGAGATTGGATGATGTTTTCAATCTGCCCTATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
* * * *
10132274 GAGGTAAGAGATTGGAT-A-G-CTTTAATCTGTCTCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
*
10132313 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
*
10132355 GGGGTAAGAGATTCGATG--G-CTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
10132394 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
10132436 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
* * * * * *
10132478 GAGGTAAGAGATTAGATGGTTGTCTTTAATTTACCCCATGATC
1 GGGGTAAGAGATTGGAT-GATGTCTTCAATCTGCCCCATGATC
* * * *
10132521 GGGGTAAGAGATTGGATGGTAG-CTTCAATTTGCCCTATTATC
1 GGGGTAAGAGATTGGATGAT-GTCTTCAATCTGCCCCATGATC
* *
10132563 GAGGTAAGAGATTGGATGATGTCTTCATTCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
* * *
10132605 GGGGTAAGAGATTGGATGGTAG-CTTTAATCTACCCCATGATC
1 GGGGTAAGAGATTGGATGAT-GTCTTCAATCTGCCCCATGATC
* *
10132647 GGGGTAAGAGATTGG-TG-TGTCTTCAATTTGCCCTC-TGATT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCC-CATGATC
** *
10132687 ATGGTAAAAGATT-GA--ATG-CTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
10132725 GGGGTAAGAGATTGGATG
1 GGGGTAAGAGATTGGATG
10132743 GTAGCTTCGT
Statistics
Matches: 476, Mismatches: 54, Indels: 49
0.82 0.09 0.08
Matches are distributed among these distances:
37 1 0.00
38 26 0.05
39 73 0.15
40 28 0.06
41 15 0.03
42 258 0.54
43 41 0.09
44 3 0.01
45 23 0.05
46 8 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
Found at i:10132320 original size:81 final size:81
Alignment explanation
Indices: 10132145--10132742 Score: 695
Period size: 81 Copynumber: 7.2 Consensus size: 81
10132135 TCTTGATTTA
* * *
10132145 GGGGTAAAAGATTGGATTG-TGGCTTCAATCTGCCCCTATTGACTTAGGGGTAA-AGATTGGATG
1 GGGGTAAGAGATTGGA-TGATGTCTTCAATCTGCCCC-A-TGA--TCGGGGTAAGAGATTGGA--
10132208 GTAGCTTCAATCTGCCCCATGATC
59 -TAGCTTCAATCTGCCCCATGATC
* * * * *
10132232 GAGGTAAGAGATTGGATGATGTTTTCAATCTGCCCTATGATCGAGGTAAGAGATTGGATAGCTTT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATAGCTTC
* *
10132297 AATCTGTCTCATGATC
66 AATCTGCCCCATGATC
* * *
10132313 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTATGATCGGGGTAAGAGATTCGATGGCTTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATAGCTTC
10132378 AATCTGCCCCATGATC
66 AATCTGCCCCATGATC
10132394 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT-A-G-C
10132459 TTCAATCTGCCCCATGATC
63 TTCAATCTGCCCCATGATC
* * * * * *
10132478 GAGGTAAGAGATTAGATGGTTGTCTTTAATTTACCCCATGATCGGGGTAAGAGATTGGATGGTAG
1 GGGGTAAGAGATTGGAT-GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGA---TAG
* * *
10132543 CTTCAATTTGCCCTATTATC
62 CTTCAATCTGCCCCATGATC
* *
10132563 GAGGTAAGAGATTGGATGATGTCTTCATTCTGCCCCATGATCGGGGTAAGAGATTGGATGGTAGC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGA---TAGC
* *
10132628 TTTAATCTACCCCATGATC
63 TTCAATCTGCCCCATGATC
* *** * *
10132647 GGGGTAAGAGATTGG-TG-TGTCTTCAATTTGCCCTC-TGATTATGGTAAAAGATTGAAT-GCTT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGATAGCTT
10132708 CAATCTGCCCCATGATC
65 CAATCTGCCCCATGATC
10132725 GGGGTAAGAGATTGGATG
1 GGGGTAAGAGATTGGATG
10132743 GTAGCTTCGT
Statistics
Matches: 449, Mismatches: 51, Indels: 30
0.85 0.10 0.06
Matches are distributed among these distances:
78 34 0.08
79 3 0.01
81 150 0.33
82 30 0.07
83 11 0.02
84 114 0.25
85 73 0.16
86 4 0.01
87 29 0.06
88 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (81 bp):
GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATAGCTTC
AATCTGCCCCATGATC
Found at i:10133012 original size:49 final size:49
Alignment explanation
Indices: 10132959--10133076 Score: 155
Period size: 49 Copynumber: 2.4 Consensus size: 49
10132949 TGTGTTTCTT
* * ** *
10132959 CATCTTTAGGGTATGAGATTCGCTGTTGCGGCCTCAATCTTTCCCTTCA
1 CATCTTTAGGGTATAAGATTCGCCGTTGCAACCTCAACCTTTCCCTTCA
* * * *
10133008 CATCTCTAAGGTATAAGGTTCGCCGTTGCAACTTCAACCTTTCCCTTCA
1 CATCTTTAGGGTATAAGATTCGCCGTTGCAACCTCAACCTTTCCCTTCA
10133057 CATCTTTAGGGTATAAGATT
1 CATCTTTAGGGTATAAGATT
10133077 ATCGTTGTGC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (49 bp):
CATCTTTAGGGTATAAGATTCGCCGTTGCAACCTCAACCTTTCCCTTCA
Found at i:10133132 original size:97 final size:98
Alignment explanation
Indices: 10132959--10133202 Score: 258
Period size: 97 Copynumber: 2.5 Consensus size: 98
10132949 TGTGTTTCTT
* * * *
10132959 CATCTTTAGGGTATGAGATTCGCTGTTGCGGCCTCAATCTTTCCCTTCACATCTCTAAGGTATAA
1 CATCTTTAGGGTATAAGATTAGCTGTTGCGGCCTCAATCTTTCCCATCACATCTCTAAGGTACAA
*
10133024 GGTTCGCCGTTGCAACTTCAACCTTTCCCTTCA
66 GGTTCGCCGTTGCAACTTCAACCTTTCCCTCCA
* * * * *
10133057 CATCTTTAGGGTATAAGATTATC-GTTG-TGCCTTCAATCTTTCCGATCACGTCTTTAAGGTACA
1 CATCTTTAGGGTATAAGATTAGCTGTTGCGGCC-TCAATCTTTCCCATCACATCTCTAAGGTACA
* * * * * *
10133120 AGGTTTGTCGTTGCAGCTTTAACTTTTCTCTCCA
65 AGGTTCGCCGTTGCAACTTCAACCTTTCCCTCCA
* * * * * * *
10133154 TATCTCTAGGGTATTAGATTTGCCGTTACGGCTTCAATCTTTCCCATCA
1 CATCTTTAGGGTATAAGATTAGCTGTTGCGGCCTCAATCTTTCCCATCA
10133203 AACCTGTAGA
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
96 3 0.03
97 75 0.64
98 38 0.32
99 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (98 bp):
CATCTTTAGGGTATAAGATTAGCTGTTGCGGCCTCAATCTTTCCCATCACATCTCTAAGGTACAA
GGTTCGCCGTTGCAACTTCAACCTTTCCCTCCA
Found at i:10133793 original size:112 final size:112
Alignment explanation
Indices: 10133604--10133808 Score: 340
Period size: 112 Copynumber: 1.8 Consensus size: 112
10133594 ACTAACCGTC
* *
10133604 ATTTCAATGCAAAAATGCTTGAACATGGCTGTAAGGTGGATAAAATTGAATTTTATTGGAGGCAA
1 ATTTCAATGCAAAAATACTTGAACATGGCTGTAAGGTGGATAAAATTAAATTTTATTGGAGGCAA
10133669 AGCTCGAGTGAATGAAAAGATTAAAAATCATTAGTCCACTAACTATT
66 AGCTCGAGTGAATGAAAAGATTAAAAATCATTAGTCCACTAACTATT
** * *
10133716 ATTTCAATGCAAACGTATTTGAACATGGTTGTAAGGTGGATAAAATTAAATTTTATTGGAGGCAA
1 ATTTCAATGCAAAAATACTTGAACATGGCTGTAAGGTGGATAAAATTAAATTTTATTGGAGGCAA
10133781 AGCTCGCA-TGAATGAAAAGATTAAAAAT
66 AGCTCG-AGTGAATGAAAAGATTAAAAAT
10133809 GACAAACAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
112 85 0.99
113 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (112 bp):
ATTTCAATGCAAAAATACTTGAACATGGCTGTAAGGTGGATAAAATTAAATTTTATTGGAGGCAA
AGCTCGAGTGAATGAAAAGATTAAAAATCATTAGTCCACTAACTATT
Found at i:10134807 original size:14 final size:13
Alignment explanation
Indices: 10134769--10134811 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
10134759 TATTTTCGAA
10134769 ATAAAAAAGACAA-
1 ATAAAAAAGA-AAT
*
10134782 ATAAAAATGAAAT
1 ATAAAAAAGAAAT
10134795 ATAAAACAAGAAAT
1 ATAAAA-AAGAAAT
10134809 ATA
1 ATA
10134812 TAGATCTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 2 0.08
13 15 0.58
14 9 0.35
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.16
Consensus pattern (13 bp):
ATAAAAAAGAAAT
Found at i:10140681 original size:16 final size:16
Alignment explanation
Indices: 10140660--10140724 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 16
10140650 ATAAATATTC
*
10140660 AGGCTTTGTGCCTAGT
1 AGGCTTCGTGCCTAGT
*
10140676 AGGCTTCGTGCCGATGTATT
1 AGGCTTCGTGCC----TAGT
*
10140696 CAGGCTTTGTGCCTAGT
1 -AGGCTTCGTGCCTAGT
10140713 AGGCTTCGTGCC
1 AGGCTTCGTGCC
10140725 GGTGTATTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
16 22 0.56
17 3 0.08
20 3 0.08
21 11 0.28
ACGTcount: A:0.12, C:0.23, G:0.31, T:0.34
Consensus pattern (16 bp):
AGGCTTCGTGCCTAGT
Found at i:10140702 original size:21 final size:20
Alignment explanation
Indices: 10140676--10140739 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 20
10140666 TGTGCCTAGT
10140676 AGGCTTCGTGCCGATGTATTC
1 AGGCTTCGTGCCG-TGTATTC
* *
10140697 AGGCTTTGTGCC---TAGT-
1 AGGCTTCGTGCCGTGTATTC
10140713 AGGCTTCGTGCCGGTGTATTC
1 AGGCTTCGTGCC-GTGTATTC
10140734 AGGCTT
1 AGGCTT
10140740 TGTGTTGGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
16 11 0.32
17 3 0.09
20 3 0.09
21 17 0.50
ACGTcount: A:0.12, C:0.22, G:0.31, T:0.34
Consensus pattern (20 bp):
AGGCTTCGTGCCGTGTATTC
Found at i:10140705 original size:37 final size:37
Alignment explanation
Indices: 10140655--10140743 Score: 169
Period size: 37 Copynumber: 2.4 Consensus size: 37
10140645 TGCACATAAA
10140655 TATTCAGGCTTTGTGCCTAGTAGGCTTCGTGCCGATG
1 TATTCAGGCTTTGTGCCTAGTAGGCTTCGTGCCGATG
*
10140692 TATTCAGGCTTTGTGCCTAGTAGGCTTCGTGCCGGTG
1 TATTCAGGCTTTGTGCCTAGTAGGCTTCGTGCCGATG
10140729 TATTCAGGCTTTGTG
1 TATTCAGGCTTTGTG
10140744 TTGGTGATCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.12, C:0.20, G:0.30, T:0.37
Consensus pattern (37 bp):
TATTCAGGCTTTGTGCCTAGTAGGCTTCGTGCCGATG
Done.