Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 59 of 125
Found at i:18083453 original size:7 final size:7
Alignment explanation
Indices: 18083441--18083465 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18083431 AAAACCAACT
18083441 CAAAACC
1 CAAAACC
18083448 CAAAACC
1 CAAAACC
18083455 CAAAACC
1 CAAAACC
18083462 CAAA
1 CAAA
18083466 TGATAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (7 bp):
CAAAACC
Found at i:18091495 original size:29 final size:28
Alignment explanation
Indices: 18091436--18091502 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
18091426 ATTTCTTAAG
* *
18091436 AATAGTGGCAAAATTGTAAAATCTAAAA
1 AATAGTGGCAAAAATGTAAAATATAAAA
* *
18091464 AATAGTGGCAAAAATGTAAAATATGGAGA
1 AATAGTGGCAAAAATGTAAAATAT-AAAA
18091493 AATAGTGGCA
1 AATAGTGGCA
18091503 GAACTAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 22 0.65
29 12 0.35
ACGTcount: A:0.51, C:0.06, G:0.21, T:0.22
Consensus pattern (28 bp):
AATAGTGGCAAAAATGTAAAATATAAAA
Found at i:18091570 original size:86 final size:86
Alignment explanation
Indices: 18091442--18091602 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 86
18091432 TAAGAATAGT
* * *
18091442 GGCAAAATTGTAAAATCTAAAAAATAGTGGCAAAAATGTAAAATATGGAGAAA-TAGTGGCAGAA
1 GGCAAAATTGTAAAATCTAAAAAACAATGGCAAAAATGTAAAATATGGA-AAATTAGTGGCAAAA
18091506 CTAAAAATTTTGAAAAACCAAG
65 CTAAAAATTTTGAAAAACCAAG
** * * * * *
18091528 GGCAAAATTGTAAAATCTGGAAAGCAATGTCAGAATTGTAAAATCTGGAAAATTAGTGGCAAAAC
1 GGCAAAATTGTAAAATCTAAAAAACAATGGCAAAAATGTAAAATATGGAAAATTAGTGGCAAAAC
**
18091593 TGTAAATTTT
66 TAAAAATTTT
18091603 TGGAAAATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
85 3 0.05
86 59 0.95
ACGTcount: A:0.48, C:0.09, G:0.19, T:0.24
Consensus pattern (86 bp):
GGCAAAATTGTAAAATCTAAAAAACAATGGCAAAAATGTAAAATATGGAAAATTAGTGGCAAAAC
TAAAAATTTTGAAAAACCAAG
Found at i:18091679 original size:28 final size:29
Alignment explanation
Indices: 18091606--18091686 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 29
18091596 AAATTTTTGG
* * *
18091606 AAAATAATGGTAGAACTGTAAAATCTTGA
1 AAAATAGTGATAGAACTGTAAAATCTTAA
** * *
18091635 AAACCAGTGACAAAACTGTAAAATC-TAA
1 AAAATAGTGATAGAACTGTAAAATCTTAA
*
18091663 AAAATAGTGTTAGAACTGTAAAAT
1 AAAATAGTGATAGAACTGTAAAAT
18091687 ATGGAAAACT
Statistics
Matches: 40, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
28 21 0.52
29 19 0.47
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.25
Consensus pattern (29 bp):
AAAATAGTGATAGAACTGTAAAATCTTAA
Found at i:18091683 original size:115 final size:115
Alignment explanation
Indices: 18091450--18091694 Score: 264
Period size: 115 Copynumber: 2.1 Consensus size: 115
18091440 GTGGCAAAAT
* *
18091450 TGTAAAATCT-AAAAAATAGTGGCAAAAATGTAAAATATGGAGAAATAGTGGCAGAACTAAAAAT
1 TGTAAAATCTGGAAAAATAGTGGCAAAAATGTAAAATATGGAGAAATAATGGCAGAACTAAAAAT
* * * ** * *
18091514 TTTGAAAAACCAAGGGCAAAATTGTAAAATCTGGAAAGCAATGTCAGAAT
66 CTTGAAAAACCAAGGACAAAACTGTAAAATCTAAAAAACAATGTCAGAAC
* * * * * *
18091564 TGTAAAATCTGGAAAATTAGTGGCAAAACTGTAAATTTTTGGA-AAATAATGGTAGAACTGTAAA
1 TGTAAAATCTGGAAAAATAGTGGCAAAAATGTAAA-ATATGGAGAAATAATGGCAGAACT-AAAA
* * *
18091628 ATCTTG-AAAACC-AGTGACAAAACTGTAAAATCTAAAAAATAGTGTTAGAAC
64 ATCTTGAAAAACCAAG-GACAAAACTGTAAAATCTAAAAAACAATGTCAGAAC
*
18091679 TGTAAAATATGGAAAA
1 TGTAAAATCTGGAAAA
18091695 CTTGTTACAA
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
114 12 0.11
115 83 0.77
116 13 0.12
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.24
Consensus pattern (115 bp):
TGTAAAATCTGGAAAAATAGTGGCAAAAATGTAAAATATGGAGAAATAATGGCAGAACTAAAAAT
CTTGAAAAACCAAGGACAAAACTGTAAAATCTAAAAAACAATGTCAGAAC
Found at i:18091694 original size:28 final size:28
Alignment explanation
Indices: 18091436--18091694 Score: 153
Period size: 29 Copynumber: 9.1 Consensus size: 28
18091426 ATTTCTTAAG
* * **
18091436 AATAGTGGCAAAATTGTAAAATCTAAAA
1 AATAGTGGCAGAACTGTAAAATCTGGAA
* * *
18091464 AATAGTGGCAAAAATGTAAAATATGGAGA
1 AATAGTGGCAGAACTGTAAAATCTGGA-A
* * *
18091493 AATAGTGGCAGAACT-AAAAATTTTGAAA
1 AATAGTGGCAGAACTGTAAAA-TCTGGAA
* * *
18091521 AACCAAG-GGCAAAATTGTAAAATCTGGAA
1 AA--TAGTGGCAGAACTGTAAAATCTGGAA
** * * *
18091550 AGCAATGTCAGAATTGTAAAATCTGGAA
1 AATAGTGGCAGAACTGTAAAATCTGGAA
* * *
18091578 AATTAGTGGCAAAACTGTAAATTTTTGGAA
1 AA-TAGTGGCAGAACTGTAAA-ATCTGGAA
* * *
18091608 AATAATGGTAGAACTGTAAAATCTTGAA
1 AATAGTGGCAGAACTGTAAAATCTGGAA
* * * **
18091636 AACCAGTGACAAAACTGTAAAATCTAAAA
1 AA-TAGTGGCAGAACTGTAAAATCTGGAA
** *
18091665 AATAGTGTTAGAACTGTAAAATATGGAA
1 AATAGTGGCAGAACTGTAAAATCTGGAA
18091693 AA
1 AA
18091695 CTTGTTACAA
Statistics
Matches: 174, Mismatches: 48, Indels: 18
0.73 0.20 0.08
Matches are distributed among these distances:
27 1 0.01
28 79 0.45
29 80 0.46
30 14 0.08
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (28 bp):
AATAGTGGCAGAACTGTAAAATCTGGAA
Found at i:18091694 original size:57 final size:57
Alignment explanation
Indices: 18091559--18091715 Score: 170
Period size: 57 Copynumber: 2.7 Consensus size: 57
18091549 AAGCAATGTC
* * * * * **
18091559 AGAATTGTAAAATCTGGAAAATTAGTGGCAAAACTGTAAATTTTTGGAAAATAATGGT
1 AGAACTGTAAAATCTGGAAAACTAGTGACAAAACTGTAAA-ATCTAAAAAATAATGGT
* * * *
18091617 AGAACTGTAAAATCTTGAAAACCAGTGACAAAACTGTAAAATCTAAAAAATAGTGTT
1 AGAACTGTAAAATCTGGAAAACTAGTGACAAAACTGTAAAATCTAAAAAATAATGGT
* * * *
18091674 AGAACTGTAAAATATGGAAAACTTGTTACAAAGCTGTAAAAT
1 AGAACTGTAAAATCTGGAAAACTAGTGACAAAACTGTAAAAT
18091716 TCTAGGAAAG
Statistics
Matches: 82, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
57 47 0.57
58 35 0.43
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.27
Consensus pattern (57 bp):
AGAACTGTAAAATCTGGAAAACTAGTGACAAAACTGTAAAATCTAAAAAATAATGGT
Found at i:18093348 original size:539 final size:536
Alignment explanation
Indices: 18091960--18093577 Score: 2823
Period size: 539 Copynumber: 3.0 Consensus size: 536
18091950 TGATCAGGGC
*
18091960 TTGATTGAATTTTAAAAAATTTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
1 TTGATTGAATTTTAAAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
* * *
18092025 TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATACATATATATATATAAAGAGAGAGAGAGA
66 TGGAATAGAAAATTTTGAGAGGAAACTAG---------A-ATATATATAGAGAGAGAGAGAGAGG
*
18092090 GAGTTTAGGGTTTTAATTTGATAAAATAACAAATGGGAAATAATAAATAATAAATAGAAATAAGA
121 GAGTTTAGGGTTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAG-
*
18092155 AAAAATATATTCTATTAAGATTTGAGAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAA
185 AAAAATATATTCTATTAAGATTTGAAAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAA
*
18092220 AAAGATAATGAAATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTTTAGATAAG
250 AAAGATAATGAAATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTCTAGATAAG
** *
18092285 TTTGAAAAAAATAATCAAAATCCTATTATTATTAGGATAAGAACTAAATGGTAACATTAAGAAAA
315 TTTGAAAAAAATAATCAAAAT-CTATTATTATTAGGATAAGAACTAAATGACAACATTAAGCAAA
* *
18092350 CTTTAGAGGGCTATTTTGGTAATTAATCCATTCTATCGAAATCAAAAGAGCAAGCTTAACTGATG
379 CTTTAGAGGGCTATTTTGG-AATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTAACTG-TG
* *
18092415 GGCTATTGTCCATAT-TATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTA
442 GGCTACTGCCCATATATATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTA
18092479 ATTGCTTGAAAAATAAAGAGGAAAACTTAA
507 ATTGCTTGAAAAATAAAGAGGAAAACTTAA
*
18092509 TTAATTGAATTTT-AAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
1 TTGATTGAATTTTAAAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
18092573 TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATATAGAGAGAGAGAGA-A-GGAGTTTAGGG
66 TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATATAGAGAGAGAGAGAGAGGGAGTTTAGGG
18092636 TTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAG-AAAATATATT
131 TTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAGAAAAATATATT
*
18092700 CTATTAATATTTGAAAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAAAAAGATAATGA
196 CTATTAAGATTTGAAAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAAAAAGATAATGA
*
18092765 AATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGATATGAATTCTAGATAAGTTTGAAAAAAA
261 AATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTCTAGATAAGTTTGAAAAAAA
*
18092830 TAATCAAAATCTTATTATTATTAGGATAAGAACTAAATTACAACATTAAGCAAACTTTAGAGGGC
326 TAATCAAAATC-TATTATTATTAGGATAAGAACTAAATGACAACATTAAGCAAACTTTAGAGGGC
*
18092895 TATTTTGGAATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTTACTGTGGGGCTACTGCCCA
390 TATTTTGGAATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTAACTGT-GGGCTACTGCCCA
*
18092960 TATTATATTTTTTTACCATATTTAATTTTTATACTAACTTGGTTCCCATCCTTAATTGCTTGAAA
454 TA-TATATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTAATTGCTTGAAA
18093025 AATAAAGAGGAAAACTTAA
518 AATAAAGAGGAAAACTTAA
18093044 TTGATTGAATTTTAAAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
1 TTGATTGAATTTTAAAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
18093109 TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATATAGAGAGAGAGAGAGAGGGAGTTTAGGG
66 TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATATAGAGAGAGAGAGAGAGGGAGTTTAGGG
18093174 TTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAGAAAAATATATT
131 TTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAGAAAAATATATT
* *
18093239 CTATTAAGATTTGAAAATGAGTACTTTGAATTTCAAATTAAGATAAGCAGTTAAAAAGATAATGA
196 CTATTAAGATTTGAAAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAAAAAGATAATGA
18093304 AATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTCTAGATAAGTTTGAAAAAAA
261 AATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTCTAGATAAGTTTGAAAAAAA
18093369 TAATCAAAATGCTATTATTATTAGGATAAGAACTAAATGACAACATTAAGCAAACTTTAGAGGGC
326 TAATCAAAAT-CTATTATTATTAGGATAAGAACTAAATGACAACATTAAGCAAACTTTAGAGGGC
18093434 TATTTTGAGAATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTAACTGTTGGGCTACTGCCC
390 TATTTTG-GAATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTAACTG-TGGGCTACTGCCC
18093499 ATATATATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTAATTGCTTGAAA
453 ATATATATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTAATTGCTTGAAA
18093564 AATAAAGAGGAAAA
518 AATAAAGAGGAAAA
18093578 ATGCAAAGAA
Statistics
Matches: 1030, Mismatches: 28, Indels: 32
0.94 0.03 0.03
Matches are distributed among these distances:
532 1 0.00
533 53 0.05
534 204 0.20
535 90 0.09
536 165 0.16
537 2 0.00
538 84 0.08
539 281 0.27
540 58 0.06
541 1 0.00
548 79 0.08
549 12 0.01
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (536 bp):
TTGATTGAATTTTAAAAAAATTAAAGAATATTTTTTCAGCAAAACTTAAGGGCTTAAAAGAGTTT
TGGAATAGAAAATTTTGAGAGGAAACTAGAATATATATAGAGAGAGAGAGAGAGGGAGTTTAGGG
TTTTAATTTGATAAAATAACAAATGGGGAATAATAAATAATAAATAGAAATAAGAAAAATATATT
CTATTAAGATTTGAAAATGAGTAATTTGAATTTCAAATTAAGATAAGTAGTTAAAAAGATAATGA
AATTTTAATTTTATTTGAACTTTGAAGAAGAATAAGAGATGAATTCTAGATAAGTTTGAAAAAAA
TAATCAAAATCTATTATTATTAGGATAAGAACTAAATGACAACATTAAGCAAACTTTAGAGGGCT
ATTTTGGAATTAATCCATTTTGTCGAAATCAAAAGAGCAAGCTTAACTGTGGGCTACTGCCCATA
TATATTTTTTTACCATATTTAATTCTTATACTAACTTGGTTCCCATCCTTAATTGCTTGAAAAAT
AAAGAGGAAAACTTAA
Found at i:18098523 original size:19 final size:19
Alignment explanation
Indices: 18098499--18098542 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
18098489 AAAGGGCCTT
*
18098499 TTTTTATTCATTTT-ATAAC
1 TTTTTA-TCATTTTAATAAA
*
18098518 TTTTTATGATTTTAATAAA
1 TTTTTATCATTTTAATAAA
18098537 TTTTTA
1 TTTTTA
18098543 CAATACTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTATCATTTTAATAAA
Found at i:18098568 original size:17 final size:18
Alignment explanation
Indices: 18098536--18098571 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18098526 ATTTTAATAA
18098536 ATTTTTACAATACTTTAT
1 ATTTTTACAATACTTTAT
*
18098554 ATTTTTACGAT-CTTTAT
1 ATTTTTACAATACTTTAT
18098571 A
1 A
18098572 AATTTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.56
Consensus pattern (18 bp):
ATTTTTACAATACTTTAT
Found at i:18098576 original size:19 final size:19
Alignment explanation
Indices: 18098510--18098578 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
18098500 TTTTATTCAT
* *
18098510 TTTATAACTTTTTATGAT-
1 TTTATAAATTTTTACGATC
*
18098528 TTTAATAAATTTTTACAATAC
1 TTT-ATAAATTTTTACGAT-C
18098549 TTTAT--ATTTTTACGATC
1 TTTATAAATTTTTACGATC
18098566 TTTATAAATTTTT
1 TTTATAAATTTTT
18098579 CTAATTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
17 6 0.14
18 13 0.31
19 18 0.43
20 2 0.05
21 3 0.07
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTATAAATTTTTACGATC
Found at i:18098577 original size:18 final size:18
Alignment explanation
Indices: 18098519--18098577 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
18098509 TTTTATAACT
*
18098519 TTTTATGAT-TTTAATAAA
1 TTTTACGATCTTT-ATAAA
* *
18098537 TTTTTACAATACTTTAT-AT
1 -TTTTACGAT-CTTTATAAA
18098556 TTTTACGATCTTTATAAA
1 TTTTACGATCTTTATAAA
18098574 TTTT
1 TTTT
18098578 TCTAATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 6 0.19
18 13 0.41
19 8 0.25
20 2 0.06
21 3 0.09
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTACGATCTTTATAAA
Found at i:18098627 original size:20 final size:20
Alignment explanation
Indices: 18098582--18098626 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
18098572 AATTTTTCTA
18098582 ATTTTTAATAAAATTTAAAT
1 ATTTTTAATAAAATTTAAAT
*
18098602 ATTTTTATTAAAATTT-AAT
1 ATTTTTAATAAAATTTAAAT
18098621 ATTTTT
1 ATTTTT
18098627 TTATAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTTAATAAAATTTAAAT
Found at i:18107248 original size:33 final size:33
Alignment explanation
Indices: 18107211--18107283 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
18107201 CCTAGAGACA
*
18107211 TTCCAATCAATGATGAAGCTGCTCTGATAGATG
1 TTCCAATCAATGATGAAGCTGCCCTGATAGATG
* * *
18107244 TTCCAATCATTGATGAAGTTGCCCTGATAGTTG
1 TTCCAATCAATGATGAAGCTGCCCTGATAGATG
18107277 TTCCAAT
1 TTCCAAT
18107284 GACTTATGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (33 bp):
TTCCAATCAATGATGAAGCTGCCCTGATAGATG
Found at i:18113729 original size:58 final size:57
Alignment explanation
Indices: 18113623--18113816 Score: 173
Period size: 58 Copynumber: 3.4 Consensus size: 57
18113613 GAATAGTGGA
* * *
18113623 AAAATTGTAAAATCTGGAAAAATAGTGGCAGAGCTGA-AAAATTTGAAAAACCAATGGC
1 AAAATTGTAAAATCTGG-AAAATAATGGCAGAACT-ATAAAATCTGAAAAACCAATGGC
* * *
18113681 AAAATTGTAAAATCT-GAAAATCAATGACAGAACTATAAAATCT-AGAAAACTAGTGGC
1 AAAATTGTAAAATCTGGAAAAT-AATGGCAGAACTATAAAATCTGA-AAAACCAATGGC
* * * *
18113738 AAAACTT-TAAAACTTTGGAAAATAATGGTAGAACTGTAAAATCTGAAAAATCAATGG-
1 AAAA-TTGTAAAA-TCTGGAAAATAATGGCAGAACTATAAAATCTGAAAAACCAATGGC
* * *
18113795 AAATACTATAAAATCTGAAAAA
1 AAA-ATTGTAAAATCTGGAAAA
18113817 AATACTCACA
Statistics
Matches: 111, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
56 7 0.06
57 46 0.41
58 51 0.46
59 7 0.06
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (57 bp):
AAAATTGTAAAATCTGGAAAATAATGGCAGAACTATAAAATCTGAAAAACCAATGGC
Found at i:18113816 original size:29 final size:29
Alignment explanation
Indices: 18113630--18113816 Score: 134
Period size: 29 Copynumber: 6.5 Consensus size: 29
18113620 GGAAAAATTG
* * *
18113630 TAAAATCTGGAAAAAT-AGTGGCAGAGCTGA
1 TAAAATCT-GAAAAATCAATGGCAAAACT-A
* * * *
18113660 -AAAATTTGAAAAACCAATGGCAAAATTG
1 TAAAATCTGAAAAATCAATGGCAAAACTA
* *
18113688 TAAAATCTG-AAAATCAATGACAGAACTA
1 TAAAATCTGAAAAATCAATGGCAAAACTA
* * *
18113716 TAAAATCTAGAAAACT-AGTGGCAAAACTT
1 TAAAATCT-GAAAAATCAATGGCAAAACTA
* * * * *
18113745 TAAAACTTTGGAAAAT-AATGGTAGAACTG
1 TAAAA-TCTGAAAAATCAATGGCAAAACTA
18113774 TAAAATCTGAAAAATCAATGG-AAATACTA
1 TAAAATCTGAAAAATCAATGGCAAA-ACTA
18113803 TAAAATCTGAAAAA
1 TAAAATCTGAAAAA
18113817 AATACTCACA
Statistics
Matches: 121, Mismatches: 29, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
28 38 0.31
29 77 0.64
30 6 0.05
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.23
Consensus pattern (29 bp):
TAAAATCTGAAAAATCAATGGCAAAACTA
Found at i:18113844 original size:87 final size:86
Alignment explanation
Indices: 18113686--18113846 Score: 193
Period size: 87 Copynumber: 1.9 Consensus size: 86
18113676 ATGGCAAAAT
* * * **
18113686 TGTAAAATCTGAAAATCAATGACAGAACTATAAAATCTAGAAAACTAGTGGCAAAACTTTAAAAC
1 TGTAAAATCTGAAAATCAATGACAGAACTATAAAATCTAAAAAAATACTCACAAAACTTTAAAAC
*
18113751 TTTGGAAAATAATGGTAGAAC
66 TATGGAAAATAATGGTAGAAC
* *
18113772 TGTAAAATCTGAAAAATCAATGGA-A-ATACTATAAAATCTGAAAAAAATACTCACAGAATTTTA
1 TGTAAAATCTG-AAAATCAAT-GACAGA-ACTATAAAATCT-AAAAAAATACTCACAAAACTTTA
18113835 AAA-TATGGAAAA
62 AAACTATGGAAAA
18113847 CTATTTACAA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
86 12 0.19
87 30 0.48
88 21 0.33
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.25
Consensus pattern (86 bp):
TGTAAAATCTGAAAATCAATGACAGAACTATAAAATCTAAAAAAATACTCACAAAACTTTAAAAC
TATGGAAAATAATGGTAGAAC
Found at i:18113876 original size:117 final size:115
Alignment explanation
Indices: 18113623--18113905 Score: 284
Period size: 117 Copynumber: 2.4 Consensus size: 115
18113613 GAATAGTGGA
* * * * * * *
18113623 AAAATTGTAAAA-TCTGGAAAAATAGTGGCAGAGCTGAAAAATTTGAAAAACCAATGGCAAAATT
1 AAAACTGTAAAATTCTGG-AAAATAATGGTAGAACTGTAAAATTTGAAAAATCAATGGCAAAACT
* ** * * *
18113687 GTAAAATCTGAAAATCAATGACAGAACTATAAAATCTAGAAAACTAGTGGC
65 ATAAAATCTGAAAAAAAATCACAGAACTATAAAATATAGAAAACTAGTGAC
* *
18113738 AAAACTTTAAAACTT-TGGAAAATAATGGTAGAACTGTAAAATCTGAAAAATCAATGG-AAATAC
1 AAAACTGTAAAA-TTCTGGAAAATAATGGTAGAACTGTAAAATTTGAAAAATCAATGGCAAA-AC
* * * * *
18113801 TATAAAATCTGAAAAAAATACTCACAGAATTTTAAAATATGGAAAACTATTTAC
64 TATAAAATCTGAAAAAAA-A-TCACAGAACTATAAAATATAGAAAACTAGTGAC
* * * *
18113855 AAAGCTGTAAAATTCTGGAAAACAATGGTAGAACTATAAAATTTGTAAAAT
1 AAAACTGTAAAATTCTGGAAAATAATGGTAGAACTGTAAAATTTGAAAAAT
18113906 AGTGGTACAC
Statistics
Matches: 136, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
114 3 0.02
115 59 0.43
116 6 0.04
117 68 0.50
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.25
Consensus pattern (115 bp):
AAAACTGTAAAATTCTGGAAAATAATGGTAGAACTGTAAAATTTGAAAAATCAATGGCAAAACTA
TAAAATCTGAAAAAAAATCACAGAACTATAAAATATAGAAAACTAGTGAC
Found at i:18115270 original size:35 final size:36
Alignment explanation
Indices: 18115203--18115270 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
18115193 TATAGTATAG
* * *
18115203 ATATTTTTTTAAAACATTATTTATCATGTATTCTCT
1 ATATTTTTATAAAACATTAATTATAATGTATTCTCT
* *
18115239 ATATTTTTATAAAACCTTAATTA-AATTTATTC
1 ATATTTTTATAAAACATTAATTATAATGTATTC
18115271 AAATAATTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
35 7 0.26
36 20 0.74
ACGTcount: A:0.35, C:0.10, G:0.01, T:0.53
Consensus pattern (36 bp):
ATATTTTTATAAAACATTAATTATAATGTATTCTCT
Found at i:18118381 original size:16 final size:15
Alignment explanation
Indices: 18118354--18118386 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
18118344 ATGAATTTAA
18118354 AATTAAATTAATTCT
1 AATTAAATTAATTCT
18118369 AATTAAATATAATTCT
1 AATTAAAT-TAATTCT
18118385 AA
1 AA
18118387 ATGTTCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTAAATTAATTCT
Found at i:18123653 original size:17 final size:18
Alignment explanation
Indices: 18123615--18123719 Score: 85
Period size: 17 Copynumber: 5.9 Consensus size: 18
18123605 AGAATTGTAT
* *
18123615 AATAGTATATATATATAAC
1 AATA-TATATGTATAAAAC
18123634 AATATATATGTA-AAAAC
1 AATATATATGTATAAAAC
* * *
18123651 AATATATGTATATAAAAT
1 AATATATATGTATAAAAC
*
18123669 AA-ATATATGTATATAAAATA
1 AATATATATG--TATAAAA-C
18123689 AATATATATGTATAAAA-
1 AATATATATGTATAAAAC
18123706 AA-A-ATATGTATAAA
1 AATATATATGTATAAA
18123720 GTATACAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
17 21 0.29
18 13 0.18
19 18 0.25
20 2 0.03
21 7 0.10
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (18 bp):
AATATATATGTATAAAAC
Found at i:18123666 original size:19 final size:18
Alignment explanation
Indices: 18123620--18123717 Score: 96
Period size: 19 Copynumber: 5.6 Consensus size: 18
18123610 TGTATAATAG
* * *
18123620 TATATATATATAACAATA
1 TATATGTATATAAAAAAA
*
18123638 TATATG--TA-AAAACAA
1 TATATGTATATAAAAAAA
18123653 TATATGTATATAAAATAAA
1 TATATGTATATAAAA-AAA
18123672 TATATGTATATAAAATAAA
1 TATATGTATATAAAA-AAA
* *
18123691 TATATATGTATAAAAAAA
1 TATATGTATATAAAAAAA
18123709 -ATATGTATA
1 TATATGTATA
18123718 AAGTATACAA
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
15 10 0.15
16 2 0.03
17 9 0.13
18 12 0.18
19 34 0.51
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (18 bp):
TATATGTATATAAAAAAA
Found at i:18123723 original size:22 final size:21
Alignment explanation
Indices: 18123698--18123738 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18123688 AAATATATAT
18123698 GTATAAAAAAAATATGTATAAA
1 GTAT-AAAAAAATATGTATAAA
* *
18123720 GTATACAAAAATTTGTATA
1 GTATAAAAAAATATGTATA
18123739 TAAAATTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (21 bp):
GTATAAAAAAATATGTATAAA
Found at i:18133101 original size:17 final size:17
Alignment explanation
Indices: 18133079--18133112 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
18133069 TTTGGCATGT
18133079 TGATTTCTTCCTCGACC
1 TGATTTCTTCCTCGACC
18133096 TGATTTCTTCCTCGACC
1 TGATTTCTTCCTCGACC
18133113 ATAACTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.12, T:0.41
Consensus pattern (17 bp):
TGATTTCTTCCTCGACC
Found at i:18134044 original size:13 final size:13
Alignment explanation
Indices: 18134026--18134050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18134016 CATTAAGGAC
18134026 AATAAATAACATT
1 AATAAATAACATT
18134039 AATAAATAACAT
1 AATAAATAACAT
18134051 GCATCCTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATAAATAACATT
Found at i:18135649 original size:58 final size:59
Alignment explanation
Indices: 18135579--18135772 Score: 195
Period size: 58 Copynumber: 3.4 Consensus size: 59
18135569 AAATGGTAGT
*
18135579 AAAATTGTAAAATCTAGAAAAGTAGTGGCAGAACTG-AAAATTTTGAAAATCCAAG-GGC
1 AAAATTGTAAAATCTAGAAAAGTAATGGCAGAACTGTAAAATTTTGAAAATCC-AGTGGC
* * * * *
18135637 AAAATTGTAAAATCT-GGAAAGCAATGGCAGAATTGTAAAATTTGGAAAAT-TAGTGG-
1 AAAATTGTAAAATCTAGAAAAGTAATGGCAGAACTGTAAAATTTTGAAAATCCAGTGGC
* * * * * *
18135693 AAATACTATAAAATTCTTGAAAA-TAATGGTAGAACTGTAAAGTCTTGAAAA-CCAGTGGC
1 AAA-ATTGTAAAA-TCTAGAAAAGTAATGGCAGAACTGTAAAATTTTGAAAATCCAGTGGC
*
18135752 AAAATTGTAAAATCTAAAAAA
1 AAAATTGTAAAATCTAGAAAA
18135773 ATTGGAGACA
Statistics
Matches: 109, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
56 5 0.05
57 32 0.29
58 65 0.60
59 7 0.06
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (59 bp):
AAAATTGTAAAATCTAGAAAAGTAATGGCAGAACTGTAAAATTTTGAAAATCCAGTGGC
Found at i:18135670 original size:28 final size:28
Alignment explanation
Indices: 18135581--18135677 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 28
18135571 ATGGTAGTAA
* *
18135581 AATTGTAAAATCTAGAAAAGTAGTGGCAG
1 AATTGTAAAATCT-GAAAAGCAATGGCAG
* * * * *
18135610 AACTG-AAAATTTTGAAAATCCAAGGGCAA
1 AATTGTAAAA-TCTGAAAA-GCAATGGCAG
*
18135639 AATTGTAAAATCTGGAAAGCAATGGCAG
1 AATTGTAAAATCTGAAAAGCAATGGCAG
18135667 AATTGTAAAAT
1 AATTGTAAAAT
18135678 TTGGAAAATT
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
28 27 0.52
29 21 0.40
30 4 0.08
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.24
Consensus pattern (28 bp):
AATTGTAAAATCTGAAAAGCAATGGCAG
Found at i:18135774 original size:58 final size:56
Alignment explanation
Indices: 18135542--18135772 Score: 166
Period size: 58 Copynumber: 4.0 Consensus size: 56
18135532 TTTTTTAAAG
* * ** * *
18135542 AATAGTGGCAAAACTGTAAAATTTGTAAAA-TGGTAGTAAAATTGTAAAATCTAGAAA
1 AATAATGGCAGAACTGTAAAATTTG-AAAACCAGTGGCAAAATTGTAAAATCT-GAAA
* * *
18135599 AGTAGTGGCAGAACTG-AAAATTTTGAAAATCCAAG-GGCAAAATTGTAAAATCTGGAA
1 AATAATGGCAGAACTGTAAAA-TTTGAAAA-CC-AGTGGCAAAATTGTAAAATCTGAAA
** * ** * *
18135656 AGCAATGGCAGAATTGTAAAATTTGGAAAATTAGTGG-AAATACTATAAAATTCTTG-AA
1 AATAATGGCAGAACTGTAAAATTT-GAAAACCAGTGGCAAA-ATTGTAAAA-TC-TGAAA
* * *
18135714 AATAATGGTAGAACTGTAAAGTCTTGAAAACCAGTGGCAAAATTGTAAAATCTAAAA
1 AATAATGGCAGAACTGTAAAAT-TTGAAAACCAGTGGCAAAATTGTAAAATCTGAAA
18135771 AA
1 AA
18135773 ATTGGAGACA
Statistics
Matches: 137, Mismatches: 24, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
56 14 0.10
57 52 0.38
58 63 0.46
59 8 0.06
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (56 bp):
AATAATGGCAGAACTGTAAAATTTGAAAACCAGTGGCAAAATTGTAAAATCTGAAA
Found at i:18144953 original size:10 final size:10
Alignment explanation
Indices: 18144921--18144965 Score: 53
Period size: 9 Copynumber: 4.9 Consensus size: 10
18144911 TTTCATTTTT
18144921 AAAAAAA-TG
1 AAAAAAATTG
18144930 AAAAAAATTG
1 AAAAAAATTG
18144940 -AAAAAATTG
1 AAAAAAATTG
*
18144949 --AAAAATTC
1 AAAAAAATTG
18144957 AAAAAAATT
1 AAAAAAATT
18144966 AGTACATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
8 7 0.22
9 16 0.50
10 9 0.28
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (10 bp):
AAAAAAATTG
Found at i:18144988 original size:7 final size:7
Alignment explanation
Indices: 18144976--18145096 Score: 105
Period size: 7 Copynumber: 17.7 Consensus size: 7
18144966 AGTACATTTT
18144976 TTTTTCA
1 TTTTTCA
18144983 TTTTTCA
1 TTTTTCA
18144990 TTTTTTTCA
1 --TTTTTCA
18144999 TTTTTTTCCA
1 --TTTTT-CA
18145009 TTTTTCA
1 TTTTTCA
18145016 TTTTTCA
1 TTTTTCA
18145023 TTTTTCA
1 TTTTTCA
18145030 -TTTTCA
1 TTTTTCA
18145036 -TTTTCA
1 TTTTTCA
18145042 -TTTTCA
1 TTTTTCA
*
18145048 -TGTTCA
1 TTTTTCA
18145054 TTTTTCA
1 TTTTTCA
* *
18145061 -CTTCCA
1 TTTTTCA
*
18145067 TTTTTAA
1 TTTTTCA
18145074 TTTTT-A
1 TTTTTCA
18145080 -TTTTC-
1 TTTTTCA
18145085 TTTTTCA
1 TTTTTCA
18145092 TTTTT
1 TTTTT
18145097 TTAATTTTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
5 4 0.04
6 33 0.33
7 41 0.41
8 5 0.05
9 14 0.14
10 2 0.02
ACGTcount: A:0.14, C:0.15, G:0.01, T:0.70
Consensus pattern (7 bp):
TTTTTCA
Found at i:18144993 original size:6 final size:6
Alignment explanation
Indices: 18144977--18145095 Score: 86
Period size: 6 Copynumber: 19.7 Consensus size: 6
18144967 GTACATTTTT
*
18144977 TTTTCA TTTTTCA -TTT-- TTTTCA TTTT-- TTTCCA TTTTTCA TTTTTCA
1 TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA -TTTTCA -TTTTCA
* * * *
18145023 TTTTTCA TTTTCA TTTTCA TTTTCA TGTTCA TTTTTCA CTTCCA TTTTTAA
1 -TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA
* *
18145074 TTTTTA TTTTCT TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTT
18145096 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
4 6 0.07
5 3 0.03
6 49 0.54
7 33 0.36
ACGTcount: A:0.14, C:0.15, G:0.01, T:0.70
Consensus pattern (6 bp):
TTTTCA
Found at i:18144995 original size:9 final size:9
Alignment explanation
Indices: 18144974--18145013 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
18144964 TTAGTACATT
18144974 TTTTTTTCA
1 TTTTTTTCA
18144983 --TTTTTCA
1 TTTTTTTCA
18144990 TTTTTTTCA
1 TTTTTTTCA
18144999 TTTTTTTCCA
1 TTTTTTT-CA
18145009 TTTTT
1 TTTTT
18145014 CATTTTTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.25
9 14 0.50
10 7 0.25
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:18145002 original size:25 final size:25
Alignment explanation
Indices: 18144974--18145120 Score: 89
Period size: 24 Copynumber: 5.8 Consensus size: 25
18144964 TTAGTACATT
18144974 TTTTTTTCATTTTTCATTTTTTTCA
1 TTTTTTTCATTTTTCATTTTTTTCA
18144999 TTTTTTTCCATTTTTCA--TTTTTCA
1 TTTTTTT-CATTTTTCATTTTTTTCA
18145023 --TTTTTCA-TTTTCA---TTTTCA
1 TTTTTTTCATTTTTCATTTTTTTCA
*
18145042 TTTTCATGTTCATTTTTCACTTCCATTTTTAA
1 TTTT--T-TTCATTTTTCA-TT---TTTTTCA
18145074 TTTTTATTTTC-TTTTTCATTTTTTT-A
1 --TTT-TTTTCATTTTTCATTTTTTTCA
* * *
18145100 ATTTTTTAATTTTTAATTTTT
1 TTTTTTTCATTTTTCATTTTT
18145121 AATTTTATTA
Statistics
Matches: 100, Mismatches: 4, Indels: 37
0.71 0.03 0.26
Matches are distributed among these distances:
19 6 0.06
20 6 0.06
21 4 0.04
22 5 0.05
23 5 0.05
24 24 0.24
25 13 0.13
26 10 0.10
27 5 0.05
30 2 0.02
31 7 0.07
32 8 0.08
33 1 0.01
34 3 0.03
35 1 0.01
ACGTcount: A:0.16, C:0.12, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTTTTTCATTTTTCATTTTTTTCA
Found at i:18145010 original size:26 final size:24
Alignment explanation
Indices: 18144976--18145039 Score: 66
Period size: 26 Copynumber: 2.8 Consensus size: 24
18144966 AGTACATTTT
18144976 TTTTTCATTTTTCATTTTTTT-CA
1 TTTTTCATTTTTCATTTTTTTCCA
18144999 TTTTTTTCCATTTTTCA--TTTTT-CA
1 --TTTTT-CATTTTTCATTTTTTTCCA
18145023 TTTTTCA-TTTTCATTTT
1 TTTTTCATTTTTCATTTT
18145040 CATTTTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
20 6 0.17
21 2 0.06
22 7 0.19
24 7 0.19
25 5 0.14
26 9 0.25
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTCATTTTTCATTTTTTTCCA
Found at i:18145077 original size:38 final size:38
Alignment explanation
Indices: 18145012--18145096 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 38
18145002 TTTTCCATTT
* * *
18145012 TTCATTTTTCATTTTTCATTTTCATTTTCATTTTCATG
1 TTCATTTTTCATCTTCCATTTTAATTTTCATTTTCATG
* * *
18145050 TTCATTTTTCA-CTTCCATTTTTAATTTTTATTTTCTTT
1 TTCATTTTTCATCTTCCA-TTTTAATTTTCATTTTCATG
18145088 TTCATTTTT
1 TTCATTTTT
18145097 TTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
37 4 0.10
38 36 0.90
ACGTcount: A:0.15, C:0.15, G:0.01, T:0.68
Consensus pattern (38 bp):
TTCATTTTTCATCTTCCATTTTAATTTTCATTTTCATG
Found at i:18145097 original size:26 final size:25
Alignment explanation
Indices: 18144970--18145096 Score: 93
Period size: 25 Copynumber: 5.0 Consensus size: 25
18144960 AAAATTAGTA
18144970 CATTTTT-TTTTCATTTTTCATTTTT
1 CATTTTTATTTTC-TTTTTCATTTTT
18144995 --TTCATTT-TTTTCCATTTTTCATTTTT
1 CATT--TTTATTTT-C-TTTTTCATTTTT
*
18145021 CATTTTTCATTTTCATTTTCA-TTTT
1 CATTTTT-ATTTTCTTTTTCATTTTT
* * ** *
18145046 CATGTTCATTTTTCACTTCCATTTTT
1 CATTTTTA-TTTTCTTTTTCATTTTT
*
18145072 AATTTTTATTTTCTTTTTCATTTTT
1 CATTTTTATTTTCTTTTTCATTTTT
18145097 TTAATTTTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.02
24 1 0.01
25 40 0.49
26 32 0.39
27 1 0.01
28 6 0.07
ACGTcount: A:0.14, C:0.15, G:0.01, T:0.70
Consensus pattern (25 bp):
CATTTTTATTTTCTTTTTCATTTTT
Found at i:18145127 original size:6 final size:7
Alignment explanation
Indices: 18145094--18145126 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
18145084 CTTTTTCATT
18145094 TTTTTAA
1 TTTTTAA
18145101 TTTTTTAA
1 -TTTTTAA
18145109 TTTTTAA
1 TTTTTAA
18145116 TTTTTAA
1 TTTTTAA
18145123 TTTT
1 TTTT
18145127 ATTATGTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTAA
Found at i:18146079 original size:13 final size:13
Alignment explanation
Indices: 18146050--18146094 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 13
18146040 AGTTGAAAAG
18146050 AAAAAAATTGATTGA
1 AAAAAAATTGA--GA
18146065 AAAAAAATTGAGA
1 AAAAAAATTGAGA
18146078 AAAAAAA--GAGA
1 AAAAAAATTGAGA
18146089 AAAAAA
1 AAAAAA
18146095 GAAGAAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.33
13 9 0.30
15 11 0.37
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAAAAATTGAGA
Found at i:18146091 original size:10 final size:9
Alignment explanation
Indices: 18146075--18146113 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
18146065 AAAAAAATTG
18146075 AGAAAAAAA
1 AGAAAAAAA
18146084 AGAGAAAAAA
1 AGA-AAAAAA
*
18146094 AGAAGAAAA
1 AGAAAAAAA
*
18146103 AGATAAAAA
1 AGAAAAAAA
18146112 AG
1 AG
18146114 TGTTTGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:18146102 original size:19 final size:19
Alignment explanation
Indices: 18146075--18146112 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18146065 AAAAAAATTG
18146075 AGAAAAAAAAGAGAAAAAA
1 AGAAAAAAAAGAGAAAAAA
* *
18146094 AGAAGAAAAAGATAAAAAA
1 AGAAAAAAAAGAGAAAAAA
18146113 GTGTTTGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (19 bp):
AGAAAAAAAAGAGAAAAAA
Found at i:18148592 original size:198 final size:201
Alignment explanation
Indices: 18148043--18148776 Score: 560
Period size: 216 Copynumber: 3.5 Consensus size: 201
18148033 GACTGCATCA
* * * * *
18148043 CCGAACATTCCATGGTCAGGAAATAACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGC
1 CCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
18148108 TTTTGGTCTTT-AA--AAATA--TATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGTCGAA
66 -TTTGCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCTCTATTCGCTCTTGGACGAA
** * * * * **
18148167 CTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTCCGAA-TCCTAAAATTATTCAAGGC
130 CTTAAGAACTTGTCAAAATTTTACGAGTTCTTTCAAAACTTC-AATTCCTTAAAGCATT--A--C
*
18148231 GATCCATTCCTTTGAGAAATTTC
190 G----A---C----AGAAATTTT
* * *
18148254 CCGAACATTCCAAGCTTGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTT-TGAAACAA
1 CCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAA
* * * * * * *
18148318 CTTT-TTATTCATAAATTAAAAACTTCTTTACGTGAGAATTGTTT-CTCTCTTCGTTCTTGGCCG
65 CTTTGCTCTT--TGAATTAAAAACTTATTTACGTGAGAATTGTTTCCTCTATTCGCTCTTGGACG
** * * *
18148381 AACTTCCGAACTTGTTAAAATTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGCATT-C-A-
128 AACTTAAGAACTTGTCAAAATTTTACGAGTTCTTTCAAAACTTCAATTCCTTAAAGCATTACGAC
18148443 AGAAATTTT
193 AGAAATTTT
* * *
18148452 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAC
1 CCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * *
18148517 ATTTGCTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTCCT-TATTGGCTCTTGGATGAA
66 -TTTGCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCTCTATTCGCTCTTGGACGAA
* * ***
18148581 CTTAAGAACTTGTCAAAGTTTTATGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTCGAGACG
130 CTTAAGAACTTGTCAAAATTTTACGAGTTCTTTCAAAACTTCAATTCCTTAAAGCATT----ACG
18148646 ATCCATTCTTTCGAGCAATTTT
191 A--CA-------GA--AATTTT
* * * * *
18148668 CCGAACATTCCATGCTCGAGAAATCACATCTTTTGGTCTAAATATTTTGTTAATTTGTAAACAAC
1 CCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
18148733 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTC
66 -TTTGCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
18148777 TGATACGAGT
Statistics
Matches: 434, Mismatches: 58, Indels: 57
0.79 0.11 0.10
Matches are distributed among these distances:
198 156 0.36
199 6 0.01
200 3 0.01
203 1 0.00
204 1 0.00
206 1 0.00
207 1 0.00
209 3 0.01
210 4 0.01
211 57 0.13
212 2 0.00
214 6 0.01
215 2 0.00
216 191 0.44
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (201 bp):
CCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
TTTGCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCCTCTATTCGCTCTTGGACGAAC
TTAAGAACTTGTCAAAATTTTACGAGTTCTTTCAAAACTTCAATTCCTTAAAGCATTACGACAGA
AATTTT
Found at i:18149519 original size:16 final size:18
Alignment explanation
Indices: 18149494--18149531 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
18149484 CTAGTTCTTG
18149494 TTTAGATTAATT-AGAGT
1 TTTAGATTAATTAAGAGT
18149511 TTTAG-TTAATTAAGAGT
1 TTTAGATTAATTAAGAGT
18149528 TTTA
1 TTTA
18149532 TTTAGATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (18 bp):
TTTAGATTAATTAAGAGT
Found at i:18151132 original size:21 final size:21
Alignment explanation
Indices: 18151088--18151133 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
18151078 AACTAGGATA
* *
18151088 TCTACCGATACAACTCTTGGT
1 TCTACCGATACAACTCATGCT
18151109 TCTACCGATACAAC-CATGACT
1 TCTACCGATACAACTCATG-CT
18151130 TCTA
1 TCTA
18151134 TCGGTAGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.30
Consensus pattern (21 bp):
TCTACCGATACAACTCATGCT
Found at i:18158291 original size:20 final size:21
Alignment explanation
Indices: 18158254--18158292 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18158244 AAACTGAGTA
*
18158254 TCACTGAGTTAGAAAATGCAG
1 TCACTAAGTTAGAAAATGCAG
18158275 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTAGAAAATGC
18158293 TAAAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (21 bp):
TCACTAAGTTAGAAAATGCAG
Found at i:18158307 original size:13 final size:13
Alignment explanation
Indices: 18158289--18158313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18158279 TAAGTTAAAA
18158289 ATGCTAAAAATGC
1 ATGCTAAAAATGC
18158302 ATGCTAAAAATG
1 ATGCTAAAAATG
18158314 AGAAAATAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:18159246 original size:18 final size:18
Alignment explanation
Indices: 18159217--18159266 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
18159207 ATATATATGG
* *
18159217 AAATGTAATGACAAATGC
1 AAATGTAGTGACAAATAC
*
18159235 AGATGTAGTGAC-AATAC
1 AAATGTAGTGACAAATAC
*
18159252 AAATGTAGGGACAAA
1 AAATGTAGTGACAAA
18159267 AGAAATGTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.48, C:0.10, G:0.22, T:0.20
Consensus pattern (18 bp):
AAATGTAGTGACAAATAC
Found at i:18168574 original size:20 final size:21
Alignment explanation
Indices: 18168537--18168575 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18168527 AAACTGAGCA
*
18168537 TCACTGAGTTAGAAAATGCAG
1 TCACTAAGTTAGAAAATGCAG
18168558 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTAGAAAATGC
18168576 TAAAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (21 bp):
TCACTAAGTTAGAAAATGCAG
Found at i:18170765 original size:16 final size:17
Alignment explanation
Indices: 18170744--18170805 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
18170734 CACAAATAAG
18170744 AATG-AAATGCAACTAC
1 AATGAAAATGCAACTAC
18170760 AATGAAAATG-AACTAAC
1 AATGAAAATGCAACT-AC
* *
18170777 AA-GTAAATGCAACAAC
1 AATGAAAATGCAACTAC
18170793 AACT-AAAATGCAA
1 AA-TGAAAATGCAA
18170806 TGACAATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 18 0.47
17 20 0.53
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.16
Consensus pattern (17 bp):
AATGAAAATGCAACTAC
Found at i:18174807 original size:51 final size:51
Alignment explanation
Indices: 18174723--18174966 Score: 321
Period size: 51 Copynumber: 4.8 Consensus size: 51
18174713 GCTATAAACA
* *
18174723 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGGTT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTCTACGGATT
* ** *
18174775 AAAGGTTCGATGACTAAGTGTCATCGTGAGTAAACAAATCCTCCACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTCTACGGATT
* *
18174826 AAAGGTCCAATGACTAAGTGTCATCGTGAGTAAATAAATCCTCTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTCTACGGATT
* * * *
18174877 AAAAGTCCGATGACTAAGTGTCATTGTGAGTAAATGAATCCAT-GACGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCC-TCTACGGATT
* *
18174928 AAAGG-CCTGATGACTCAGTGTCATCGTGAGTATATGAAT
1 AAAGGTCC-GATGACTAAGTGTCATCGTGAGTAAATGAAT
18174967 TTCTATACAG
Statistics
Matches: 170, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
50 2 0.01
51 163 0.96
52 5 0.03
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTCTACGGATT
Found at i:18184257 original size:878 final size:881
Alignment explanation
Indices: 18182532--18184294 Score: 2750
Period size: 878 Copynumber: 2.0 Consensus size: 881
18182522 CTCTCACGAA
* * *
18182532 CATTACCAAGAAAAAAATTCTATTGTAGATTTTTTTTAGCTAGGTTGGACCACGTAAAAGCATTT
1 CATTACCAAGAAAAAAATTCTATTGTAGATTTTTTTTAGCTAGATTGCACCACCTAAAAGCATTT
* * *
18182597 TGAATAAAGTAAATTAGCAATACCTCGATAATGTAAATAAGAGTGAGAGAAAAAGATATTCTTTA
66 TGAATAAAGTAAATTAGCAATACCTCAATAATATAAATAAGAGTGAGAGAAAAAGAGATTCTTTA
* *
18182662 AGTTTAACACTAAAATTTTCTATATCAATTCATAATTTTTTAAAAATAAAAAATAGTATAATTTA
131 AGTTTAACACTAAAATTTTCTATATCAATTCATAAATTTTTAAAAATAAAAAATAGTAAAATTTA
* *
18182727 TTTCATACAAATAGTGAAAAAGATTTTAGTTTTCAATAAACTTAATTTTTAAAGCTTTATTTTTT
196 TTTCATACAAATAGTGAAAAAGATTTTAGTTTTCAAAAAACTTAATTTTTAAAGCTTTACTTTTT
18182792 CAAGTAAATGAACACTTACAATATTTTTTGGATGCTAGTTTAAGGTTTAAAAATATTTTATGAAA
261 CAAGTAAATGAACACTTACAATATTTTTTGGATGCTAGTTTAAGGTTTAAAAATATTTTATGAAA
* * *
18182857 ATTGTTAAACATAAGGTTTTTACTTTCAACATATGTTATGTCTGGTTTAGATACCTGTAAGAAAT
326 ATTGTTAAACACAAGGTTTTTAATTTCAACATATGTTACGTCTGGTTTAGATACCTGTAAGAAAT
* **
18182922 TTTTAGGTAGATTGTCATATCCATTTTGTACTTCTTTCATTTAGTTTTTTTACATATATAGTAGA
391 TTTTAGGTAAATTGTCATATCCATTTTGTACTTCTTTCATTTAGTTTTTACACATATATAGTAGA
* *
18182987 ACAAAGTTATTGTCCAAACAAAATTTACTAAATGGTTTGAAACTGGCAGTCACAGAAACAGCTTG
456 ACAAAGTTATTGTCCAAACAAAATTTACTAAATGGTTTCAAACTGGCAGTCACAGAAACAGATTG
* *
18183052 TGTATAATAAAGGCAACCCCTATCTCTACGCTGCCTCTTGAAGCTCAAGCTCTTCCTCCGAAGAG
521 TGTATAATAAAGACAACCCCTATCTCTACGCTGCCTCTTGAAGCTCAAGCTCCTCCTCCGAAGAG
* *
18183117 AAGATACAACATGGTAAGCATCCACACACCTTAGAAACATAAACAAATAGCTCTATTAACTACTA
586 AAGATACAACATGGTAAGCATCCACACACCTTAGAAACAAAAACAAATAGCTCTATTAACTACCA
* *
18183182 GTTTCTTACATGTTTTGTGATATAATTTCACAATTATCTTGAATGCTTTGCAAATCAGTTAAAGC
651 GTTTCTTACATGTTTTGTGATATAATTTCACAATTATCTGGAATGCTTTCCAAATCAGTTAAAGC
* *
18183247 CGTCACCTGAGTTCCTAAACAATTGGATTGTTACTGAAAGTCCCCGCAAAAATGGAGGATTAATA
716 CGTCACCTGAGTTCCTAAACAATTGGATTGTTACTAAAAGTCCCCGCAAAAAAGGAGGATTAATA
* * * ** *
18183312 AGGTAATTATTTTTAAATAACTTTTACAAATTTTATGATCTATTTTTCCCTATATGTAGGAAAAA
781 AGATAATTATCTTTAAATAACTTTTAAAAATCATATGATCTATTGTTCCCTATATGTAGGAAAAA
*
18183377 ATATATCTCATCTATCAGCGATGTTTAATAATATCT
846 ATATATCTCATCTATCAGCGATGTTTAACAATATCT
* * *
18183413 CATTACCAAGAAAAAAGTT-TATTTTAGA-TTTTTTTAGCTAGATTGCACCACCTGAAAGCATTT
1 CATTACCAAGAAAAAAATTCTATTGTAGATTTTTTTTAGCTAGATTGCACCACCTAAAAGCATTT
* * *
18183476 TGAATAAAGTAAATTAGCAATACCGT-AATAATATAAATAATAGTGAGAGAAAATGGGATTCTTT
66 TGAATAAAGTAAATTAGCAATACC-TCAATAATATAAATAAGAGTGAGAGAAAAAGAGATTCTTT
* * *
18183540 AAGTTTAACACTAAACTTTTCTATATCAATTCATAAATTTTTAAAATTAAAAAATGGTAAAATTT
130 AAGTTTAACACTAAAATTTTCTATATCAATTCATAAATTTTTAAAAATAAAAAATAGTAAAATTT
* * *
18183605 ATTTCATTCAAATAGTGAAAATGATTTTAGTTTTCAAAAAACTTATTTTTTAAAGCTTTACTTTT
195 ATTTCATACAAATAGTGAAAAAGATTTTAGTTTTCAAAAAACTTAATTTTTAAAGCTTTACTTTT
* *
18183670 T-AAGTAAATGAATACTTACAATTTTTTTTGGATGCTAGTTTAAGGTTTAAAAATATTTTATGAA
260 TCAAGTAAATGAACACTTACAATATTTTTTGGATGCTAGTTTAAGGTTTAAAAATATTTTATGAA
* * * * **
18183734 ATTTGTTAAACACAAGGTTTTTAATTTCCACATATGTTACGTTTGGTTTAGATACCTTTAAGATT
325 AATTGTTAAACACAAGGTTTTTAATTTCAACATATGTTACGTCTGGTTTAGATACCTGTAAGAAA
* *
18183799 TTTTTAGGTAAATTGTCATATTCATTTTGTACTTCTTTTATTTAGTTTTTACACATATATAGTAG
390 TTTTTAGGTAAATTGTCATATCCATTTTGTACTTCTTTCATTTAGTTTTTACACATATATAGTAG
* *
18183864 AACAAATTTATTGTCCAAA-AAAATTTACTAAATGGTTTCAAACTGGTAGTCACAGAAACA-ATT
455 AACAAAGTTATTGTCCAAACAAAATTTACTAAATGGTTTCAAACTGGCAGTCACAGAAACAGATT
* * * * * * *
18183927 GATTGTATAATAGAGACAACCGCTATGTTTACGTTGCCTCTTGAATCTCAAGCTCCTCCTTCGAA
520 G--TGTATAATAAAGACAACCCCTATCTCTACGCTGCCTCTTGAAGCTCAAGCTCCTCCTCCGAA
* *
18183992 GAGAAGATACCACATGGTAAGCATCCACGCACCTTAGAAACAAAAACAAATAGCTCTATTAACTA
583 GAGAAGATACAACATGGTAAGCATCCACACACCTTAGAAACAAAAACAAATAGCTCTATTAACTA
* * *
18184057 CCAGTTTCTTACATGTTTTGTGCTATAATTTCACGATTATCTGGAATGCTTTCCTAATCAGTTAA
648 CCAGTTTCTTACATGTTTTGTGATATAATTTCACAATTATCTGGAATGCTTTCCAAATCAGTTAA
* *
18184122 AGCCGTCATCTGAGTTCCTAAACAATTGGATTGTTACTAAAAGTCCACC-TAAAAAAGGAAGGAT
713 AGCCGTCACCTGAGTTCCTAAACAATTGGATTGTTACTAAAAGTCC-CCGCAAAAAAGG-AGGAT
*
18184186 TAATAAGATAATTATCTTTAAATTAC-TTTAAAAATCATATGATCTATTGTTCCCTATATGTAGG
776 TAATAAGATAATTATCTTTAAATAACTTTTAAAAATCATATGATCTATTGTTCCCTATATGTAGG
* * *
18184250 CAAAAATATATCTCATCTATCAGTGATGTTTGACAATATCT
841 AAAAAATATATCTCATCTATCAGCGATGTTTAACAATATCT
18184291 CATT
1 CATT
18184295 TTTTAACTTT
Statistics
Matches: 802, Mismatches: 75, Indels: 13
0.90 0.08 0.01
Matches are distributed among these distances:
876 3 0.00
877 39 0.05
878 495 0.62
879 238 0.30
880 9 0.01
881 18 0.02
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (881 bp):
CATTACCAAGAAAAAAATTCTATTGTAGATTTTTTTTAGCTAGATTGCACCACCTAAAAGCATTT
TGAATAAAGTAAATTAGCAATACCTCAATAATATAAATAAGAGTGAGAGAAAAAGAGATTCTTTA
AGTTTAACACTAAAATTTTCTATATCAATTCATAAATTTTTAAAAATAAAAAATAGTAAAATTTA
TTTCATACAAATAGTGAAAAAGATTTTAGTTTTCAAAAAACTTAATTTTTAAAGCTTTACTTTTT
CAAGTAAATGAACACTTACAATATTTTTTGGATGCTAGTTTAAGGTTTAAAAATATTTTATGAAA
ATTGTTAAACACAAGGTTTTTAATTTCAACATATGTTACGTCTGGTTTAGATACCTGTAAGAAAT
TTTTAGGTAAATTGTCATATCCATTTTGTACTTCTTTCATTTAGTTTTTACACATATATAGTAGA
ACAAAGTTATTGTCCAAACAAAATTTACTAAATGGTTTCAAACTGGCAGTCACAGAAACAGATTG
TGTATAATAAAGACAACCCCTATCTCTACGCTGCCTCTTGAAGCTCAAGCTCCTCCTCCGAAGAG
AAGATACAACATGGTAAGCATCCACACACCTTAGAAACAAAAACAAATAGCTCTATTAACTACCA
GTTTCTTACATGTTTTGTGATATAATTTCACAATTATCTGGAATGCTTTCCAAATCAGTTAAAGC
CGTCACCTGAGTTCCTAAACAATTGGATTGTTACTAAAAGTCCCCGCAAAAAAGGAGGATTAATA
AGATAATTATCTTTAAATAACTTTTAAAAATCATATGATCTATTGTTCCCTATATGTAGGAAAAA
ATATATCTCATCTATCAGCGATGTTTAACAATATCT
Found at i:18184862 original size:33 final size:33
Alignment explanation
Indices: 18184790--18184889 Score: 128
Period size: 33 Copynumber: 3.0 Consensus size: 33
18184780 AGGTGAACAG
* * *
18184790 AATGATAAAGCTGCCCTGAGAGATGTTCAAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
*
18184823 AATGATGAAGCTGCCCTGATAGATGTTCCACTC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
* * * *
18184856 ATTGATGAAGCTACCCCGATAGTTGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
18184889 A
1 A
18184890 CTTATGTTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (33 bp):
AATGATGAAGCTGCCCTGATAGATGTTCCAATC
Found at i:18201983 original size:28 final size:28
Alignment explanation
Indices: 18201952--18202027 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 28
18201942 TTAAAGGGCC
*
18201952 TTTTTATACATTTTATAATTA-TTTATGA
1 TTTTTATAAATTTTATAATTATTTTAT-A
* *
18201980 TTTTAATAAATTTT-TACAATATTTTATA
1 TTTTTATAAATTTTATA-ATTATTTTATA
*
18202008 TTTTTAT-GATCTTTATAATT
1 TTTTTATAAAT-TTTATAATT
18202028 TTGTTTCCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
27 4 0.11
28 27 0.71
29 7 0.18
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (28 bp):
TTTTTATAAATTTTATAATTATTTTATA
Found at i:18202014 original size:8 final size:9
Alignment explanation
Indices: 18201952--18202029 Score: 61
Period size: 9 Copynumber: 8.4 Consensus size: 9
18201942 TTAAAGGGCC
18201952 TTTTTATACA
1 TTTTTATA-A
18201962 -TTTTATAA
1 TTTTTATAA
*
18201970 TTATTTATGA
1 TT-TTTATAA
*
18201980 TTTTAATAAA
1 TTTTTAT-AA
*
18201990 TTTTTACAA
1 TTTTTATAA
18201999 TATTTTAT-A
1 T-TTTTATAA
*
18202008 TTTTTATGA
1 TTTTTATAA
*
18202017 TCTTTATAA
1 TTTTTATAA
18202026 TTTT
1 TTTT
18202030 GTTTCCAATT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.13
9 28 0.52
10 19 0.35
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:18206832 original size:16 final size:17
Alignment explanation
Indices: 18206808--18206849 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
18206798 ATGCATCTCA
*
18206808 TTTAATTGTCA-TGCAT
1 TTTAATTGTCATTACAT
*
18206824 TTTAGTTGTCATTACAT
1 TTTAATTGTCATTACAT
*
18206841 TTTACTTGT
1 TTTAATTGT
18206850 TGGTTCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (17 bp):
TTTAATTGTCATTACAT
Found at i:18207446 original size:14 final size:14
Alignment explanation
Indices: 18207427--18207492 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
18207417 ACTCACGTAT
18207427 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
18207441 -AAAAAAAGAAGAAG
1 AAAAAAAAGAA-AAG
*
18207455 AAAAAGAAAGCAAA-
1 AAAAA-AAAGAAAAG
* *
18207469 TAAAAAGAGAAAAG
1 AAAAAAAAGAAAAG
* *
18207483 TAGAAAAAGA
1 AAAAAAAAGA
18207493 TATATATTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
13 16 0.38
14 15 0.36
15 6 0.14
16 5 0.12
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:18207464 original size:16 final size:15
Alignment explanation
Indices: 18207427--18207476 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
18207417 ACTCACGTAT
18207427 AAAAA-AAAGAAAAG
1 AAAAAGAAAGAAAAG
18207441 -AAAA-AAAGAAGAAG
1 AAAAAGAAAGAA-AAG
* *
18207455 AAAAAGAAAGCAAAT
1 AAAAAGAAAGAAAAG
18207470 AAAAAGA
1 AAAAAGA
18207477 GAAAAGTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 10 0.32
14 3 0.10
15 13 0.42
16 5 0.16
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:18207464 original size:24 final size:24
Alignment explanation
Indices: 18207430--18207481 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
18207420 CACGTATAAA
18207430 AAAAAGAAAAG-AAAAAAAGAAGAAG
1 AAAAAGAAAAGCAAAAAAA-AAG-AG
*
18207455 AAAAAG-AAAGCAAATAAAAAGAG
1 AAAAAGAAAAGCAAAAAAAAAGAG
18207478 AAAA
1 AAAA
18207482 GTAGAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 6 0.24
24 7 0.28
25 12 0.48
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (24 bp):
AAAAAGAAAAGCAAAAAAAAAGAG
Found at i:18211385 original size:25 final size:24
Alignment explanation
Indices: 18211349--18211395 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
18211339 AAACAACTTC
18211349 TGAAAAAAACTC-AAGAGCAATTCT
1 TGAAAAAAACTCAAAGAG-AATTCT
18211373 TGAAGAAAAACTCAAAGAGAATT
1 TGAA-AAAAACTCAAAGAGAATT
18211396 ATTATTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (24 bp):
TGAAAAAAACTCAAAGAGAATTCT
Found at i:18216982 original size:17 final size:17
Alignment explanation
Indices: 18216960--18217010 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
18216950 ATATATATAT
18216960 AACAATATATATGTAAA
1 AACAATATATATGTAAA
*
18216977 AACAATATATGTATATAAA
1 AACAATATA--TATGTAAA
18216996 ATA-AATATATATGTA
1 A-ACAATATATATGTA
18217011 TATATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 14 0.48
19 14 0.48
20 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (17 bp):
AACAATATATATGTAAA
Found at i:18216995 original size:19 final size:20
Alignment explanation
Indices: 18216973--18217034 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
18216963 AATATATATG
18216973 TAAAAACA-ATATATGTATA
1 TAAAAACATATATATGTATA
*
18216992 TAAAATAAATATATATGTATA
1 TAAAA-ACATATATATGTATA
*
18217013 TATAAAATAGTATATATGTATA
1 TA-AAAACA-TATATATGTATA
18217035 AAATATACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.14
20 2 0.05
21 15 0.41
22 15 0.41
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (20 bp):
TAAAAACATATATATGTATA
Found at i:18217007 original size:23 final size:22
Alignment explanation
Indices: 18216981--18217034 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
18216971 TGTAAAAACA
*
18216981 ATATATGTATATAAAATAAATAT
1 ATATATATATATAAAAT-AATAT
* *
18217004 ATATGTATATATAAAATAGTAT
1 ATATATATATATAAAATAATAT
*
18217026 ATATGTATA
1 ATATATATA
18217035 AAATATACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (22 bp):
ATATATATATATAAAATAATAT
Found at i:18217711 original size:2 final size:2
Alignment explanation
Indices: 18217704--18217739 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
18217694 AGAATGTCAA
18217704 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18217740 GAAGCTTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18225685 original size:2 final size:2
Alignment explanation
Indices: 18225678--18225716 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
18225668 AATATAAATA
18225678 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
18225717 AAAGGGATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18227195 original size:33 final size:33
Alignment explanation
Indices: 18227152--18227222 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
18227142 AGTGATGACT
*
18227152 AATCAATGATGAAGCTGCCTTGATAGATGTTCC
1 AATCAATGATGAAGCTGCCGTGATAGATGTTCC
* * *
18227185 AATCATTGATGAAGTTGCCGTGATAGTTGTTCC
1 AATCAATGATGAAGCTGCCGTGATAGATGTTCC
18227218 AATCA
1 AATCA
18227223 CTTATGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (33 bp):
AATCAATGATGAAGCTGCCGTGATAGATGTTCC
Found at i:18235901 original size:28 final size:28
Alignment explanation
Indices: 18235861--18236120 Score: 157
Period size: 29 Copynumber: 9.1 Consensus size: 28
18235851 TTTTTTAAAG
18235861 AATAGTGGCAAAACTGTAAAATTTGAAA
1 AATAGTGGCAAAACTGTAAAATTTGAAA
* * * *
18235889 AATGGTGGTAAAATTGTAAAATCTCGAAA
1 AATAGTGGCAAAACTGTAAAAT-TTGAAA
* *
18235918 AGTAGTGGCAGAACTG-AAAATTTTGAAAA
1 AATAGTGGCAAAACTGTAAAA-TTTG-AAA
* * *
18235947 AACAAG-GGCAAAACTGTAAAATCTGGAA
1 AA-TAGTGGCAAAACTGTAAAATTTGAAA
** * * * *
18235975 AGCAATGACAGAATTGTAAAATTTGGAAA
1 AATAGTGGCAAAACTGTAAAATTT-GAAA
* * *
18236004 ATTAGTGGAAAAACTATAAAATTCTTG-AA
1 AATAGTGGCAAAACTGTAAAA-T-TTGAAA
* * * *
18236033 AATAATGGTAGAACTGTAAAGTCTTGAAA
1 AATAGTGGCAAAACTGTAAAAT-TTGAAA
** **
18236062 ACCAGTGGCAAAACTGTAAAATCTAAAAA
1 AATAGTGGCAAAACTGTAAAAT-TTGAAA
* * *
18236091 AATAGTGGTAGAACTGTAAAATTTGGAA
1 AATAGTGGCAAAACTGTAAAATTTGAAA
18236119 AA
1 AA
18236121 CTTGTGACAA
Statistics
Matches: 170, Mismatches: 52, Indels: 20
0.70 0.21 0.08
Matches are distributed among these distances:
27 1 0.01
28 52 0.31
29 107 0.63
30 8 0.05
31 2 0.01
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (28 bp):
AATAGTGGCAAAACTGTAAAATTTGAAA
Found at i:18236051 original size:58 final size:57
Alignment explanation
Indices: 18235861--18236184 Score: 201
Period size: 58 Copynumber: 5.6 Consensus size: 57
18235851 TTTTTTAAAG
* * * * * * * *
18235861 AATAGTGGCAAAACTGTAAAATTT-GAAAAATGGTGGTAAAATTGTAAAATCTCGAA
1 AATAATGGCAGAACTGTAAAATTTGGAAAACTAGTGGAAAAACTATAAAATCTAGAA
* * * * * *
18235917 AAGTAGTGGCAGAACTG-AAAATTTTGAAAAAACAAG-GGCAAAACTGTAAAATCTGGAA
1 AA-TAATGGCAGAACTGTAAAA-TTTG-GAAAACTAGTGGAAAAACTATAAAATCTAGAA
** * * * *
18235975 AGCAATGACAGAATTGTAAAATTTGGAAAATTAGTGGAAAAACTATAAAATTCTTGAA
1 AATAATGGCAGAACTGTAAAATTTGGAAAACTAGTGGAAAAACTATAAAA-TCTAGAA
* * * * * *
18236033 AATAATGGTAGAACTGTAAAGTCTT-GAAAACCAGTGGCAAAACTGTAAAATCTAAAAA
1 AATAATGGCAGAACTGTAAAAT-TTGGAAAACTAGTGGAAAAACTATAAAATCT-AGAA
* * * * * *
18236091 AATAGTGGTAGAACTGTAAAATTTGGAAAACTTGT-GACAAAGCTATAACATTCTAGGA
1 AATAATGGCAGAACTGTAAAATTTGGAAAACTAGTGGA-AAAACTATAA-AATCTAGAA
** * * *
18236149 AACGATGGTAGAACTATAAAATTTGTAAAAC-AGTGG
1 AATAATGGCAGAACTGTAAAATTTGGAAAACTAGTGG
18236185 TACACGGTCG
Statistics
Matches: 208, Mismatches: 47, Indels: 24
0.75 0.17 0.09
Matches are distributed among these distances:
56 12 0.06
57 51 0.25
58 134 0.64
59 11 0.05
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.25
Consensus pattern (57 bp):
AATAATGGCAGAACTGTAAAATTTGGAAAACTAGTGGAAAAACTATAAAATCTAGAA
Found at i:18239652 original size:216 final size:216
Alignment explanation
Indices: 18239275--18240229 Score: 1098
Period size: 216 Copynumber: 4.4 Consensus size: 216
18239265 TACACAACTA
* * * * * *
18239275 CCGAACTACCAAACTTGTCAAACTTTTGCAATTTCTTTTATAACATCAGTTCCTTAAAGTATTCA
1 CCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA
* * * *
18239340 ACACGATCCATTCCTTCGAGCAA-TTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTC
66 AGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTC
* * *
18239404 TAAATAGTTTATCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
131 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
*
18239469 TGTTTCTCTCTTGGTTCTTGG
196 TATTTCTCTCTTGGTTCTTGG
* * * *
18239490 CCGAACTTCCGAACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCA
1 CCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA
* * * * * *
18239555 AGATGACCCATTCATTCGAGCAATATTCCGAACATTCCATGCTCTGGAAATTGAATCATTTTGTC
66 AGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTC
*
18239620 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAT
131 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
18239685 TATTTCTC-CTTTGGCTCTCGG
196 TATTTCTCTC-TTGGTTCTTGG
** * * * * **
18239706 ATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTCA
1 CCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA
* * * *
18239771 AGACT-ATCGATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCAAT-ATTTTG
66 AGA-TGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCG-AATCATTTGG
* * * * *
18239834 TCTAAATAGTTTGTCATTTTATAAACAACTTTTAGCCTTTGAATTAAAAATTTATTTTCGTGAGA
129 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* **
18239899 ATCATTTCTCTCTTGGTTCTTAT
194 ATTATTTCTCTCTTGGTTCTTGG
* * * * ** *
18239922 CCGAAGTTTCGAACTT-TCCAAACTTTTATGAGTTCTTTTATAATTTCAGTTCCTTAATTTAATC
1 CCGAACTTCCGAACTTGT-CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTC
* * ** * *
18239986 AAGATGATCCATTCCTTCGAACAATTTTCCAAACATTTTAGGCTCGGGAAATCGCATCATTTGGT
65 AAGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGT
* * * *** *
18240051 CTAAATTGTTCGTCAATTTGTAAA-AAAAATTGGTCTTTGAATTAAGAACTTATTTACGTGAGAA
130 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
*
18240115 TTGTTTCTCTCTTGGTTCCTT-G
195 TTATTTCTCTCTTGGTT-CTTGG
** * * * * *
18240137 CAAAACAAT-CGAACTTGTCAAACTTTTACGATTTCTTTCATAACTTCGGTTCTTTAAAGTATTC
1 CCGAAC-TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTC
* * *
18240201 AAGACGATCCATTCCTTCGTGAAATTTTC
65 AAGATGATCCATTCCTTCGAGCAATTTTC
18240230 GACTGATAAG
Statistics
Matches: 619, Mismatches: 110, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
215 199 0.32
216 415 0.67
217 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (216 bp):
CCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA
AGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TATTTCTCTCTTGGTTCTTGG
Found at i:18240581 original size:3 final size:3
Alignment explanation
Indices: 18240573--18240604 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
18240563 AATATTTAGG
18240573 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
18240605 GTTGTTGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:18240610 original size:3 final size:3
Alignment explanation
Indices: 18240604--18240628 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
18240594 ATTATTATTA
18240604 TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT T
18240629 TATATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TGT
Found at i:18245406 original size:5 final size:5
Alignment explanation
Indices: 18245396--18245420 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18245386 AAGATAATTG
18245396 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
18245421 CGAAAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:18255431 original size:14 final size:15
Alignment explanation
Indices: 18255412--18255449 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
18255402 CCCGAGTGTT
18255412 TTTATTTTAATTT-A
1 TTTATTTTAATTTCA
*
18255426 TTTATTTTACTTTCA
1 TTTATTTTAATTTCA
18255441 TTT-TTTTAA
1 TTTATTTTAA
18255450 AAATGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTCA
Found at i:18255519 original size:6 final size:6
Alignment explanation
Indices: 18255503--18255635 Score: 89
Period size: 6 Copynumber: 21.7 Consensus size: 6
18255493 GTACATTTTT
*
18255503 TTTTCA TTTTTCA TTTT-- TTTTCA TTTT-- TTTCCA TTTTCCA TTTTTCA
1 TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT-CA -TTTTCA
* *
18255550 TTTTTCA TTTTCCA TTTTTCA TTTTTCTT TTTTCA TTTTAA TTTTCA TTTTCA
1 -TTTTCA TTTT-CA -TTTTCA -TTTTC-A TTTTCA TTTTCA TTTTCA TTTTCA
* * *
18255603 TGTTCA TTTTTAA TTTT-- TTTTCT TTTTCA TTTT
1 TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTT
18255636 TTTAATTTTT
Statistics
Matches: 104, Mismatches: 10, Indels: 25
0.75 0.07 0.18
Matches are distributed among these distances:
4 11 0.11
6 49 0.47
7 36 0.35
8 8 0.08
ACGTcount: A:0.14, C:0.14, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:18255522 original size:10 final size:10
Alignment explanation
Indices: 18255509--18255539 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
18255499 TTTTTTTTCA
18255509 TTTTTCATTT
1 TTTTTCATTT
18255519 TTTTTCATTT
1 TTTTTCATTT
*
18255529 TTTTCCATTT
1 TTTTTCATTT
18255539 T
1 T
18255540 CCATTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:18255636 original size:7 final size:7
Alignment explanation
Indices: 18255502--18255620 Score: 102
Period size: 7 Copynumber: 16.7 Consensus size: 7
18255492 AGTACATTTT
18255502 TTTTTCA
1 TTTTTCA
18255509 TTTTTCA
1 TTTTTCA
18255516 TTTTTTTTCA
1 ---TTTTTCA
18255526 TTTTTTTCCA
1 --TTTTT-CA
*
18255536 TTTTCCA
1 TTTTTCA
18255543 TTTTTCA
1 TTTTTCA
18255550 TTTTTCA
1 TTTTTCA
*
18255557 TTTTCCA
1 TTTTTCA
18255564 TTTTTCA
1 TTTTTCA
*
18255571 TTTTTCT
1 TTTTTCA
18255578 TTTTTCA
1 TTTTTCA
18255585 -TTTT-A
1 TTTTTCA
*
18255590 ATTTTCA
1 TTTTTCA
18255597 -TTTTCA
1 TTTTTCA
*
18255603 -TGTTCA
1 TTTTTCA
*
18255609 TTTTTAA
1 TTTTTCA
18255616 TTTTT
1 TTTTT
18255621 TTTCTTTTTC
Statistics
Matches: 96, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
5 1 0.01
6 19 0.20
7 56 0.58
8 4 0.04
9 7 0.07
10 9 0.09
ACGTcount: A:0.14, C:0.14, G:0.01, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:18256620 original size:14 final size:14
Alignment explanation
Indices: 18256590--18256635 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 14
18256580 AGTCGAAAAG
18256590 AAAAAAATTGATTGAA
1 AAAAAAATTGA--GAA
18256606 AAAAAAATTGAGAA
1 AAAAAAATTGAGAA
18256620 AAAAAAA--GAGAA
1 AAAAAAATTGAGAA
18256632 AAAA
1 AAAA
18256636 GAAGAAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.30
14 10 0.33
16 11 0.37
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAAAAATTGAGAA
Found at i:18256640 original size:12 final size:12
Alignment explanation
Indices: 18256603--18256644 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
18256593 AAAATTGATT
18256603 GAAAAAAAAATTGA
1 GAAAAAAAAA--GA
18256617 GAAAAAAAAAGA
1 GAAAAAAAAAGA
*
18256629 GAAAAAAGAAGA
1 GAAAAAAAAAGA
18256641 -AAAA
1 GAAAA
18256645 GATAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 4 0.15
12 13 0.48
14 10 0.37
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (12 bp):
GAAAAAAAAAGA
Found at i:18258961 original size:216 final size:215
Alignment explanation
Indices: 18258587--18259343 Score: 912
Period size: 216 Copynumber: 3.5 Consensus size: 215
18258577 GAATGCATCA
* * * *
18258587 CGAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGCT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
18258652 TTTGGTCTTTAAATTAAAAA-TATATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGTTGAAC
66 TTT-GTCTTTAAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
* * ***
18258716 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTCCGAATCCTAAAATTTTTCAAGACGA
129 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGAATCCTTAAAGCATTCAAGACGA
* **
18258781 TCCATTCCTTTGAGAAATTTCC
194 TCCATTCCTTCGAGAAATTTTT
* * *
18258803 CGAACATTCCATGCTTGGGAAGTCATATCATTTGGTCTAAATAGTTTGTCATTTT-TGAAACAAC
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAC
* * * * **
18258867 TTTT-TATTCATAAATTAAAAACTTCTTTACGTGTGAATTGTTTCTCTCTTCGTTCTTGGCCGAA
65 TTTTGTCTT--TAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
* *
18258931 CTTCCGAACTTGTCAAAATTTTAGGAGTTCTTTTATAACTTC-AATTCCTTAAAGCATTCAAGAT
128 CTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGAA-TCCTTAAAGCATTCAAGAC
* * * *
18258995 GACCCAATCATTCAAGAAATTTTT
192 GATCCATTCCTTCGAGAAATTTTT
* * *
18259019 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACA
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
18259084 TTTGCTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTACT-TTTTGGCTCTTGGATGAAC
66 TTTG-TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGATGAAC
** * * * * * *
18259148 TTAAGAACTTGTCAAAGTTTTATGAGTTCTTTCAAAACTTCGATTCCTTAAAGCATTCGAGACGA
129 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGAATCCTTAAAGCATTCAAGACGA
* *
18259213 TCCATTTCTTCGAGCAATTTTT
194 TCCATTCCTTCGAGAAATTTTT
* * * * *
18259235 TGAACATTCCATGCTCGAGAAATCACATCTTTTGGTTTAAATAGTTTGTCAATTTGTAAACAACT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
18259300 TTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCT
66 TTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCT
18259344 GATACGAGTC
Statistics
Matches: 460, Mismatches: 70, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 5 0.01
216 443 0.96
217 6 0.01
218 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
TTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGAATCCTTAAAGCATTCAAGACGATC
CATTCCTTCGAGAAATTTTT
Found at i:18260055 original size:16 final size:18
Alignment explanation
Indices: 18260030--18260067 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
18260020 CTAGTTCTTG
18260030 TTTAGATTAATT-AGAGT
1 TTTAGATTAATTAAGAGT
18260047 TTTAG-TTAATTAAGAGT
1 TTTAGATTAATTAAGAGT
18260064 TTTA
1 TTTA
18260068 TTTAGATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (18 bp):
TTTAGATTAATTAAGAGT
Found at i:18265826 original size:42 final size:42
Alignment explanation
Indices: 18265767--18266163 Score: 544
Period size: 42 Copynumber: 9.5 Consensus size: 42
18265757 AAGGAAAGCA
**
18265767 TTCATTGCATTTAGAGGCCCAGGCATGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
18265809 TTCATCGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
18265851 TTCATTGCATTTAGAGGCCCAAGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** * *
18265893 TTCATCACATTCAGAGGCCCAGGTGTGGAGGGCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
18265935 TTCATTGCATTTAGAGGCTCACGTGTGGA-GTCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGT-CCATTTACTT
* *
18265977 TTCATTGCATTTAGAGGCCTAGATGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
18266019 TTCATTACATTTTGAGGCTCAAGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
18266061 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* ** *
18266103 TTCATTGCATTTAGAAGCTTAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
18266145 TTTATTGAAATTAGAGGCC
1 TTCATTGCATTTAGAGGCC
18266164 TAAGCATAGA
Statistics
Matches: 308, Mismatches: 45, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
41 1 0.00
42 305 0.99
43 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:18266576 original size:3 final size:3
Alignment explanation
Indices: 18266570--18266598 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
18266560 CTTCTTCTAC
18266570 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
18266599 TTTAGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:18267229 original size:51 final size:50
Alignment explanation
Indices: 18267145--18267521 Score: 173
Period size: 51 Copynumber: 7.7 Consensus size: 50
18267135 TATTATAAAG
* ** *
18267145 AAAAGTTTAAATTTTTAAACAAAATTTTCATTTTTTTAACTATTTCGAAAT
1 AAAAGTTTAAATTTTTAAATAAAATAGTGATTTTTTTAACTATTT-GAAAT
* * *
18267196 AAAAGTTTAAATTTTTAAGTAAAATAGTGATTTTCCTTAA--A----AAAA
1 AAAAGTTTAAATTTTTAAATAAAATAGTGATTTT-TTTAACTATTTGAAAT
* * ** * *
18267241 AGAAAGTTTATATTTTTTAAA-AAAATA-TG--TTTTCTAGTTATTTTAAAG
1 A-AAAGTTTA-AATTTTTAAATAAAATAGTGATTTTTTTAACTATTTGAAAT
* ** *
18267289 AAAAGTTTAAATTTTTAAATAAAGTTTTGGTTTTTTTAACTATTTTGAAAT
1 AAAAGTTTAAATTTTTAAATAAAATAGTGATTTTTTTAACTA-TTTGAAAT
** * *
18267340 AAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTTTTTAA--A----AAAG
1 AAAAGTTTAAATTTTTAAATAAAATAGTGA-TTTTTTTAACTATTTGAAAT
* ** * *
18267385 AGAAAG-TTAATATTTTAAAAATAAAA-A-T-ATGTTTTTTAGTTATTTTAAAG
1 A-AAAGTTTAA-ATTTT-TAAATAAAATAGTGAT-TTTTTTAACTATTTGAAAT
* * * ** *
18267435 AAACGGTTTAAATTTTTAAACAAATTTTTTATTTTTTTTAACTATTTCGAAAT
1 AAA-AGTTTAAATTTTTAAATAAAATAGTGA-TTTTTTTAACTATTT-GAAAT
* * * *
18267488 AAAAGTTTGAATTTTTAAGTAAAGTACTGATTTT
1 AAAAGTTTAAATTTTTAAATAAAATAGTGATTTT
18267522 CATTAAAAAA
Statistics
Matches: 243, Mismatches: 51, Indels: 64
0.68 0.14 0.18
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 9 0.04
45 13 0.05
46 34 0.14
47 27 0.11
48 6 0.02
49 8 0.03
50 21 0.09
51 67 0.28
52 45 0.19
53 7 0.03
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (50 bp):
AAAAGTTTAAATTTTTAAATAAAATAGTGATTTTTTTAACTATTTGAAAT
Found at i:18267509 original size:148 final size:144
Alignment explanation
Indices: 18267028--18267668 Score: 844
Period size: 148 Copynumber: 4.4 Consensus size: 144
18267018 AGTTTTGGGT
*
18267028 TTTTTTTAAACAATTTTGAAATAAAAGCTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAA
1 TTTTTTT-AACTATTTTGAAATAAAAG-TTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAA
* *
18267093 AAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTCTAGTTATTATAAAGAAAAGTTTAAATT
64 AAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
*
18267158 TTTAAACAAAATTTTCA
129 TTTAAAC-AAATTTTTA
* * *
18267175 TTTTTTTAACTATTTCGAAATAAAAGTTTAAATTTTTAAGTAAAATAGTGATTTTCCTTAAAAAA
1 TTTTTTTAACTATTTTGAAATAAAAGTTT-GATTTTTAAGTAAAATAGTGATTTT-CTTTAAAAA
* *
18267240 AAGAAAGTTTATATTTTT--TAA-AAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
64 AAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
* **
18267302 TTTAAATAAAGTTTTGG
129 TTTAAACAAA-TTTTTA
*
18267319 TTTTTTTAACTATTTTGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTTTTTAAAAAA
1 TTTTTTTAACTATTTTGAAATAAAAGTTT-GATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAA
* *
18267384 GAGAAAG-TTA-ATATTTTAAAAATAAAAATATGTTTTTTAGTTATTTTAAAGAAACGGTTTAAA
65 -AGAAAGTTTAGAT-TTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAA-AGTTTAAA
18267447 TTTTTAAACAAATTTTTTA
127 TTTTTAAACAAA-TTTTTA
* * * *
18267466 TTTTTTTTAACTATTTCGAAATAAAAGTTTGAATTTTTAAGTAAAGTACTGATTTTCATTAAAAA
1 -TTTTTTTAACTATTTTGAAATAAAAGTTTG-ATTTTTAAGTAAAATAGTGATTTTCTTTAAAAA
* * *
18267531 AAGAAAGTTTAGATTTTTAAAAAATAAAAATCTGTTTT-TAGTGATTTTAAAGAAAAAGTTTAAT
64 AAGAAAGTTTAGATTTTT-AAAAATAAAAATATGTTTTCTAGTTATTTTAAAG-AAAAGTTTAAA
*
18267595 TTTTTAAACAAAGTTTTGA
127 TTTTTAAACAAA-TTTTTA
* * * *
18267614 TTTTTTTAACTATTTTGAAATAAAAATTTTGATTTTGAAATAAAGTAGTGATTTT
1 TTTTTTTAACTATTTTGAAAT-AAAAGTTTGATTTTTAAGTAAAATAGTGATTTT
18267669 GTTTTAATCA
Statistics
Matches: 439, Mismatches: 39, Indels: 32
0.86 0.08 0.06
Matches are distributed among these distances:
142 2 0.00
143 18 0.04
144 107 0.24
145 7 0.02
146 71 0.16
147 102 0.23
148 109 0.25
149 23 0.05
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (144 bp):
TTTTTTTAACTATTTTGAAATAAAAGTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAA
GAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATTTT
TAAACAAATTTTTA
Found at i:18267666 original size:147 final size:146
Alignment explanation
Indices: 18267028--18267668 Score: 873
Period size: 144 Copynumber: 4.4 Consensus size: 146
18267018 AGTTTTGGGT
* *
18267028 TTTTTTTAAACAATTTTGAAATAAAAGCTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAA
1 TTTTTTT-AACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAA
* *
18267093 AAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTCTAGTTATTATAAAGAAAAGTTTAAATT
65 AAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
* *
18267158 TTTAAACAAAATTTTCA
130 TTTAAACAAAGTTTTGA
* ** *
18267175 TTTTTTTAACTATTTCGAAATAAAAGTTTAAATTTTTAAGTAAAATAGTGATTTTCCTTAAAAAA
1 TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTT-CTTTAAAAA
* *
18267240 AAGAAAGTTTATATTTTT--TAA-AAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
65 AAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATT
* *
18267302 TTTAAATAAAGTTTTGG
130 TTTAAACAAAGTTTTGA
* *
18267319 TTTTTTTAACTATTTTGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTTTTTAAAAAA
1 TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAA
* *
18267384 GAGAAAG-TTA-ATATTTTAAAAATAAAAATATGTTTTTTAGTTATTTTAAAGAAACGGTTTAAA
66 -AGAAAGTTTAGAT-TTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAA-AGTTTAAA
* *
18267447 TTTTTAAACAAATTTTTTA
128 TTTTTAAACAAAGTTTTGA
* * * *
18267466 TTTTTTTTAACTATTTCGAAATAAAAG-TTTGAATTTTTAAGTAAAGTACTGATTTTCATTAAAA
1 -TTTTTTTAACTATTTTGAAATAAAAGTTTTG-ATTTTTAAGTAAAATAGTGATTTTCTTTAAAA
* *
18267530 AAAGAAAGTTTAGATTTTTAAAAAATAAAAATCTGTTTT-TAGTGATTTTAAAGAAAAAGTTTAA
64 AAAGAAAGTTTAGATTTTT-AAAAATAAAAATATGTTTTCTAGTTATTTTAAAG-AAAAGTTTAA
*
18267594 TTTTTTAAACAAAGTTTTGA
127 ATTTTTAAACAAAGTTTTGA
* * * *
18267614 TTTTTTTAACTATTTTGAAATAAAAATTTTGATTTTGAAATAAAGTAGTGATTTT
1 TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTT
18267669 GTTTTAATCA
Statistics
Matches: 437, Mismatches: 43, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
142 2 0.00
143 15 0.03
144 110 0.25
145 4 0.01
146 73 0.17
147 108 0.25
148 102 0.23
149 23 0.05
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (146 bp):
TTTTTTTAACTATTTTGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAA
AGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTCTAGTTATTTTAAAGAAAAGTTTAAATTT
TTAAACAAAGTTTTGA
Found at i:18268260 original size:25 final size:25
Alignment explanation
Indices: 18268216--18268264 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
18268206 TAGTTTAATG
18268216 TTTTATATTTATTCACATTTGCATAA
1 TTTTATATTTATTCACATTT-CATAA
**
18268242 TTTT-TATTTATTCTTATTTCATA
1 TTTTATATTTATTCACATTTCATA
18268265 TTTGTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTATATTTATTCACATTTCATAA
Found at i:18278390 original size:25 final size:23
Alignment explanation
Indices: 18278358--18278403 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
18278348 GTTAGATCCA
18278358 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
18278383 AATTAAATCTAAATAATAATT
1 AATTAAATCTAAAAAATAATT
18278404 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:18278487 original size:13 final size:13
Alignment explanation
Indices: 18278466--18278499 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
18278456 TAAACAATAT
18278466 AATAATAATCCTA
1 AATAATAATCCTA
*
18278479 AATATTAATCCTA
1 AATAATAATCCTA
*
18278492 AAAAATAA
1 AATAATAA
18278500 AGTTTAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATCCTA
Found at i:18279469 original size:21 final size:21
Alignment explanation
Indices: 18279442--18279513 Score: 90
Period size: 21 Copynumber: 3.3 Consensus size: 21
18279432 CTTTTTCTTC
*
18279442 TCTTTTTTTCCTCAAATTTTTT
1 TCTTTTTTT-TTCAAATTTTTT
*
18279464 TCTTTTTTTTTTCAATTTTTTT
1 TC-TTTTTTTTTCAAATTTTTT
* *
18279486 TCTTTTTTTTTGACATTTTTT
1 TCTTTTTTTTTCAAATTTTTT
18279507 TCTTTTT
1 TCTTTTT
18279514 CTAAATAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
21 23 0.52
22 14 0.32
23 7 0.16
ACGTcount: A:0.10, C:0.12, G:0.01, T:0.76
Consensus pattern (21 bp):
TCTTTTTTTTTCAAATTTTTT
Found at i:18279472 original size:11 final size:11
Alignment explanation
Indices: 18279458--18279496 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
18279448 TTTCCTCAAA
18279458 TTTTTTTCTTT
1 TTTTTTTCTTT
**
18279469 TTTTTTTCAAT
1 TTTTTTTCTTT
18279480 TTTTTTTCTTT
1 TTTTTTTCTTT
18279491 TTTTTT
1 TTTTTT
18279497 GACATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.05, C:0.08, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:18280523 original size:19 final size:18
Alignment explanation
Indices: 18280469--18280521 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
18280459 AAATATACTA
* *
18280469 AATTTTTTTGAACTTTTC
1 AATTTTTTTTAAATTTTC
18280487 AATTTTTTTTCAAATTTTC
1 AATTTTTTTT-AAATTTTC
18280506 AATTTTTTTT-AATTTT
1 AATTTTTTTTAAATTTT
18280522 TTTAAAAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 6 0.19
18 9 0.28
19 17 0.53
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.66
Consensus pattern (18 bp):
AATTTTTTTTAAATTTTC
Found at i:18283255 original size:41 final size:41
Alignment explanation
Indices: 18283162--18283257 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
18283152 TTGTTCGTAG
*
18283162 AGAATTCTTGTCAAGGTGGAGATTGTTAAAATTGGGTGACT
1 AGAATTCTTGTTAAGGTGGAGATTGTTAAAATTGGGTGACT
*
18283203 AGAATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACT
1 AGAATTCTTGTTAAGGTGGAGATTGTTAAAATTGGGTGACT
*
18283244 AGAGTTCTTGTTAA
1 AGAATTCTTGTTAA
18283258 AATAAAATTC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.28, C:0.06, G:0.29, T:0.36
Consensus pattern (41 bp):
AGAATTCTTGTTAAGGTGGAGATTGTTAAAATTGGGTGACT
Found at i:18285418 original size:16 final size:15
Alignment explanation
Indices: 18285391--18285423 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
18285381 ATGAATTTAA
18285391 AATTAAATTAATTCT
1 AATTAAATTAATTCT
18285406 AATTAAATATAATTCT
1 AATTAAAT-TAATTCT
18285422 AA
1 AA
18285424 ATGTTCTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTAAATTAATTCT
Found at i:18290064 original size:12 final size:12
Alignment explanation
Indices: 18290047--18290071 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18290037 TGTTATTATG
18290047 ATGAATGCTATT
1 ATGAATGCTATT
18290059 ATGAATGCTATT
1 ATGAATGCTATT
18290071 A
1 A
18290072 ATTATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATGAATGCTATT
Found at i:18306166 original size:20 final size:21
Alignment explanation
Indices: 18306129--18306167 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18306119 AAACTGAGTA
*
18306129 TCACTGAGTTAGAAAATGCAG
1 TCACTAAGTTAGAAAATGCAG
18306150 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTAGAAAATGC
18306168 TAAAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (21 bp):
TCACTAAGTTAGAAAATGCAG
Found at i:18306182 original size:13 final size:13
Alignment explanation
Indices: 18306164--18306188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18306154 TAAGTTAAAA
18306164 ATGCTAAAAATGC
1 ATGCTAAAAATGC
18306177 ATGCTAAAAATG
1 ATGCTAAAAATG
18306189 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:18325251 original size:33 final size:33
Alignment explanation
Indices: 18325167--18325264 Score: 133
Period size: 33 Copynumber: 3.0 Consensus size: 33
18325157 AGGTGAACAG
* *
18325167 AATGATGAAGCTGCCCAGAGAGATGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
*
18325200 AATGATGAAGCTACCCTGATAGATGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
* * * *
18325233 ATTGATGAAGTTGTCCTGATAGTTGTTCCAAT
1 AATGATGAAGCTGCCCTGATAGATGTTCCAAT
18325265 AACTTATGTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (33 bp):
AATGATGAAGCTGCCCTGATAGATGTTCCAATC
Found at i:18340358 original size:21 final size:23
Alignment explanation
Indices: 18340318--18340360 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
18340308 TAATAAATAG
*
18340318 GATTAATTAAAGGTTAATTAAGT
1 GATTAATTAAAGGCTAATTAAGT
18340341 GATT-ATTAAA-GCTAATTAAG
1 GATTAATTAAAGGCTAATTAAG
18340361 AAAGTCCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 6 0.32
23 4 0.21
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (23 bp):
GATTAATTAAAGGCTAATTAAGT
Found at i:18341218 original size:18 final size:18
Alignment explanation
Indices: 18341158--18341243 Score: 102
Period size: 18 Copynumber: 4.8 Consensus size: 18
18341148 CGGAAGGAAT
*
18341158 AGCATACTGGCTAGTTTG
1 AGCATACTGGCTCGTTTG
* * *
18341176 AGCA-ACTAGCTCCTTAG
1 AGCATACTGGCTCGTTTG
*
18341193 AGCATACTGGCTCGTTTT
1 AGCATACTGGCTCGTTTG
* *
18341211 AGCGTACTGACTCGTTTG
1 AGCATACTGGCTCGTTTG
18341229 AGCATACTGGCTCGT
1 AGCATACTGGCTCGT
18341244 AAGACCAATA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
17 13 0.24
18 41 0.76
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.31
Consensus pattern (18 bp):
AGCATACTGGCTCGTTTG
Found at i:18342471 original size:17 final size:18
Alignment explanation
Indices: 18342441--18342474 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18342431 TTAAAGGGCC
18342441 TTTTTGATGCATTTTATA
1 TTTTTGATGCATTTTATA
*
18342459 TTTTTTATG-ATTTTAT
1 TTTTTGATGCATTTTAT
18342475 TAAAATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.68
Consensus pattern (18 bp):
TTTTTGATGCATTTTATA
Found at i:18342548 original size:19 final size:19
Alignment explanation
Indices: 18342526--18342573 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
18342516 TTTGTTTCTA
18342526 ATTTTTAATAAAATTAAAT
1 ATTTTTAATAAAATTAAAT
* *
18342545 A-TTTTATTAAAATTTAAT
1 ATTTTTAATAAAATTAAAT
*
18342563 ATTTTTTATAA
1 ATTTTTAATAA
18342574 TTTTTTCCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTTAATAAAATTAAAT
Found at i:18345827 original size:33 final size:33
Alignment explanation
Indices: 18345797--18345889 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
18345787 CAGAATGACA
* *
18345797 AAGCTGCCCTGAGAGATGTTCAAATCAATGATG
1 AAGCTGCCCTGATAGATGTTCCAATCAATGATG
*
18345830 AAGCTGCCCTGATAGATGTTCCAATCATTGATG
1 AAGCTGCCCTGATAGATGTTCCAATCAATGATG
* *
18345863 AAGCTACCCTGATAGTTGTTCCAATCA
1 AAGCTGCCCTGATAGATGTTCCAATCA
18345890 CTTATGCTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (33 bp):
AAGCTGCCCTGATAGATGTTCCAATCAATGATG
Found at i:18353643 original size:18 final size:18
Alignment explanation
Indices: 18353620--18353688 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 18
18353610 CTTCTTATAC
18353620 ATTTTATAATTTTTTATG
1 ATTTTATAATTTTTTATG
*
18353638 ATTTTAATAAATTTTTACAAT-
1 ATTTT-AT-AATTTTT--TATG
18353659 ATTTTAT-A-TTTTTATG
1 ATTTTATAATTTTTTATG
18353675 ATCTTTATAATTTT
1 AT-TTTATAATTTT
18353689 GTTTCCAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
15 2 0.05
16 2 0.05
17 9 0.22
18 7 0.17
19 5 0.12
20 9 0.22
21 5 0.12
22 2 0.05
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTATAATTTTTTATG
Found at i:18353673 original size:8 final size:9
Alignment explanation
Indices: 18353621--18353688 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
18353611 TTCTTATACA
18353621 TTTTATAATT
1 TTTTATAA-T
*
18353631 TTTTATGAT
1 TTTTATAAT
*
18353640 TTTAATAAAT
1 TTTTAT-AAT
*
18353650 TTTTACAAT
1 TTTTATAAT
18353659 ATTTTAT-AT
1 -TTTTATAAT
*
18353668 TTTTATGAT
1 TTTTATAAT
*
18353677 CTTTATAAT
1 TTTTATAAT
18353686 TTT
1 TTT
18353689 GTTTCCAATT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 6 0.13
9 22 0.48
10 18 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18353718 original size:19 final size:19
Alignment explanation
Indices: 18353696--18353744 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
18353686 TTTGTTTCCA
18353696 ATTTTTAATAAAATTAAAT
1 ATTTTTAATAAAATTAAAT
* * *
18353715 ATTTTTATTAAATTTTAAT
1 ATTTTTAATAAAATTAAAT
*
18353734 ATTTTTTATAA
1 ATTTTTAATAA
18353745 TTTTTGCCAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTAATAAAATTAAAT
Found at i:18358662 original size:12 final size:12
Alignment explanation
Indices: 18358645--18358671 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
18358635 AATGAGGATT
18358645 CTAATCCTCTAA
1 CTAATCCTCTAA
18358657 CTAATCCTCTAA
1 CTAATCCTCTAA
18358669 CTA
1 CTA
18358672 TTGTGCTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (12 bp):
CTAATCCTCTAA
Found at i:18358953 original size:17 final size:17
Alignment explanation
Indices: 18358928--18358970 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
18358918 ATGCATCTCA
*
18358928 TTTAATTGTCATTGCAT
1 TTTAATTGTCATTACAT
* *
18358945 TTTAGTTGTCGTTACAT
1 TTTAATTGTCATTACAT
*
18358962 TTTACTTGT
1 TTTAATTGT
18358971 TGGTTCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.56
Consensus pattern (17 bp):
TTTAATTGTCATTACAT
Found at i:18359584 original size:16 final size:15
Alignment explanation
Indices: 18359547--18359596 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
18359537 AGTCACGTAT
18359547 AAAAA-AAAGAAAAG
1 AAAAAGAAAGAAAAG
18359561 -AAAA-AAAGAAGAAG
1 AAAAAGAAAGAA-AAG
* *
18359575 AAAAAGAAAGCAAAT
1 AAAAAGAAAGAAAAG
18359590 AAAAAGA
1 AAAAAGA
18359597 GAAAAGCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 10 0.32
14 3 0.10
15 13 0.42
16 5 0.16
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:18359584 original size:24 final size:24
Alignment explanation
Indices: 18359550--18359601 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
18359540 CACGTATAAA
18359550 AAAAAGAAAAG-AAAAAAAGAAGAAG
1 AAAAAGAAAAGCAAAAAAA-AAG-AG
*
18359575 AAAAAG-AAAGCAAATAAAAAGAG
1 AAAAAGAAAAGCAAAAAAAAAGAG
18359598 AAAA
1 AAAA
18359602 GCAGAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 6 0.24
24 7 0.28
25 12 0.48
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (24 bp):
AAAAAGAAAAGCAAAAAAAAAGAG
Found at i:18379853 original size:25 final size:26
Alignment explanation
Indices: 18379825--18379881 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
18379815 GAGGTAAGAA
*
18379825 ATTTCTAATTT-CTAA-TTTTTAATTT
1 ATTT-TAATTTACTAACTCTTTAATTT
18379850 A-TTTAATTTACTAACTCTTTAATTT
1 ATTTTAATTTACTAACTCTTTAATTT
18379875 ATTTTAA
1 ATTTTAA
18379882 ATTGTTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 6 0.21
24 6 0.21
25 11 0.39
26 5 0.18
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTAATTTACTAACTCTTTAATTT
Found at i:18383217 original size:16 final size:16
Alignment explanation
Indices: 18383198--18383230 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
18383188 GCAAACTTTA
*
18383198 AACAAGTCAAAGTTTG
1 AACAAGTCAAAGCTTG
18383214 AACAAGTCAAAGCTTG
1 AACAAGTCAAAGCTTG
18383230 A
1 A
18383231 TGAGTGATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.21
Consensus pattern (16 bp):
AACAAGTCAAAGCTTG
Found at i:18409005 original size:216 final size:214
Alignment explanation
Indices: 18408106--18410367 Score: 2405
Period size: 216 Copynumber: 10.5 Consensus size: 214
18408096 TAAATAGATT
* ** * * *
18408106 GTAAAAGTTTGAAAAGTTCAAAAGTTCGGACAAGAACCAATAGAGAAACAATTCTTAGGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
18408171 AGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTCAGACCAAATGATTTGA
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* ** * *
18408236 TTTGCCAAGCATGGAATGTTCGGGAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTTAGGA
130 TTT-CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
18408301 ACCGAAATTATAAAAGAACTT
194 ACCGAAGTTATAAAAGAACTC
* * * * * *
18408322 ATAAAATTTTGACAAGTTCT-AAAGTTTGACCAAGAGCCAAGAGAGAAACAATTCTCACATAAAT
1 GTAAAAGTTTGACAAGTT-TGAAAGTTCG-GCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * * *
18408386 TAGTTTTCAATTCAAAGACAAAAAGCTCTTCACAAAATGACAAACGATTTAAACCAAATGATGTG
64 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTG
* * *
18408451 ATTTCTCGAGAATGGAATGTTCG-AAAATTGCTCGAAGGAATAGATCATCTTGAATACTTTAAGG
129 ATTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
18408515 AACCGAAGTTATAAAAGAAATC
193 AACCGAAGTTATAAAAGAACTC
** * * * * *
18408537 ACAAAAGTTTGACAAGTTCGATAGTTTGGCAAGGAACCAAGATAGAAA-AATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGGCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * **
18408601 AG-TTTTAATTCAAAGACCAAAATTTGTTTACAAATTGAC-GACATTTTTAGACCAAATGATACG
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC-TATTTAGACCAAATGATGTG
*** * * *
18408664 ATTTCCCGAGCAACAAATGTT-TAAAAATTGCTCAAAGGAATGGATCGGCTTGAATACTTTAAGG
129 ATTT-CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
18408728 AACAGAAGTTATAAAAGAAATC
193 AACCGAAGTTATAAAAGAACTC
** * ** *
18408750 ACAAACGTTTGACAAGTTTGGTAGTTCGGCAAGGAACCAAGAGAGAAACAATTCTCACATAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGGCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18408815 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAATTAACGAACTATTTAGACTAAAAGATGTGA
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* ** *
18408880 TTTCTCGAGCCA-GGAATGTTTGAAAAATTATTCGAAGGAATGTATCG-CTTTGAATACTTTAAG
130 TTTC-CGAG-CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAG
* *
18408943 GAACAGAAGATATAAAAGAACTC
192 GAACCGAAGTTATAAAAGAACTC
* * *
18408966 GTAAAAGTTTGATCAA-TTTGAAATTTAGGACAAGAACCAAGAGAGAAACGATTCTCACGTAAAT
1 GTAAAAGTTTGA-CAAGTTTGAAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * **
18409030 AAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACGAAATGATGCA
64 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTG
* * * * * *
18409095 ATTTCCAGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAATTGATCGTCTTGAAAACTTTAGGG
129 ATTTCC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* **
18409160 AACTGAAAATATAAAAGAACTC
193 AACCGAAGTTATAAAAGAACTC
* * * ** * * * *
18409182 GTAAAAGCTTGAAAAGTTTGGAAGTTCAAACCAGCACCAAGAAAGAAACAATTCTAACGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTC-GGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
18409247 AGTTTTTATTTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGAAT-TG
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGTG
* * * * * *
18409311 ATTTACCAAGCATGGAATGTTCGGAAAATTTCTCTATGGAATGGATCGTCTTGAATACTTTTAGG
129 ATTT-CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
18409376 AACCGAAGTTATAAAAGAACTC
193 AACCGAAGTTATAAAAGAACTC
18409398 GTAAAA-TTTAGACAA-TTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
1 GTAAAAGTTT-GACAAGTTT-GAAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
18409461 TAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTTAGACCAAATAAAGT
63 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT
* * * *
18409526 GATATCCCGAGCATGGAATGTTCG-GAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAG
128 GAT-TTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
** *
18409590 GAATAGAAGTTATAAAAGAAATC
192 GAACCGAAGTTATAAAAGAACTC
** * * * ** *
18409613 ACAACAGTTTTACAAGTTCGGTAGTTCGGCAAGCAACCAAGAGAAAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGGCAAG-AACCAAGAGAGAAACAATTCTCACGTAAATA
** * * * * * **
18409678 AGACTTTAATCCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTATAACAATTGATGCAA
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* * * * *
18409743 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAATGAATGGGTCGTCTTGAATTCTTTATGGA
130 TTT-CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
18409808 ACCTAAGTTATAAAAGAACTC
194 ACCGAAGTTATAAAAGAACTC
* ** * * *
18409829 GTAAAATTTTGA-AAACTTAAGAAGTTCGGCTAAGAACTAAGAGAGAAACAATTCCCACTGTAAA
1 GTAAAAGTTTGACAAGTTTGA-AAGTTCGGC-AAGAACCAAGAGAGAAACAATTCTCAC-GTAAA
* * * * * * *
18409893 TAAGTTTTTAATTTAAAAAACAAGA-CTATTTACAAAATGACAAACTATTTAGACCAAATGATGC
63 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT
* * * *
18409957 GATTTCCTGAGCATCGAATGTAC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAG
128 GATTTCC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
18410021 GATCCGAAGTTATAAAACAAATC
192 GAACCGAAGTTATAAAAGAACTC
* * * *
18410044 GCAAAAGTTTGACAAGTTCGATAGTTCAGCAAGGAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGGCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * ** *
18410109 AGTTTTTAATTCAAAGACCAAAATTTGTTTACAAATTTACGAACTATTTAGACCAACGGATGTTA
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* * * * * ** **
18410174 TTTCCCGAGCCTGGAATGTTCAAAAAATTGTTTGAAGAAATTAATCGTCTTGAATACACTAAGGA
130 TTT-CCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*** *
18410239 AAAAAAATTATAAAAGAACTC
194 ACCGAAGTTATAAAAGAACTC
** * *
18410260 GTAAAAGTTTGACAAGTTCAAAAGTTCGGACAAGAACCTAGAGAGAAACGATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTTGAAAGTTCGG-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
18410325 AGTTTTTAATTCAAAAACTAAAACTTGTTTATAAAATGACAAA
65 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
18410368 GTTTTTAATG
Statistics
Matches: 1696, Mismatches: 306, Indels: 88
0.81 0.15 0.04
Matches are distributed among these distances:
212 2 0.00
213 161 0.09
214 69 0.04
215 482 0.28
216 942 0.56
217 40 0.02
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (214 bp):
GTAAAAGTTTGACAAGTTTGAAAGTTCGGCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
TTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
CGAAGTTATAAAAGAACTC
Found at i:18409793 original size:431 final size:429
Alignment explanation
Indices: 18408106--18410367 Score: 2447
Period size: 431 Copynumber: 5.3 Consensus size: 429
18408096 TAAATAGATT
* * * * *
18408106 GTAAAAGTTTGAAAAGTTCAAAAGTTCGGACAAGAACCAATAGAGAAACAATTCTTAGGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * **
18408171 AGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTCAGACCAAATGATTTGA
66 AGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * *
18408236 TTTGCCAAGCATGGAATGTTCGGGAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTTAGGA
131 TTTCCCGAGCATGGAATGTTC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * * *** * * *
18408301 ACCGAAATTATAAAAGAACTTATAAAATTTTGACAAGTTCTAAAGTTTGACCAAG-AGCCAAGAG
195 ATAGAAGTTATAAAAGAAATCA-CAAAGTTTGACAAGTTCGGTAGTTCG-GCAAGCAACCAAGAG
* * * * * * *
18408365 AGAAACAATTCTCACATAAATTAGTTTTCAATTCAAAGACAAAAAGCTCTTCACAAAATGACAAA
258 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * * *
18408430 CGATTTAAACCAAATGATGTGATTTCTCGAGAATGGAATGTTC-GAAAATTGCTCGAAGGAATAG
323 CTATTTAAA-CAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGG
* *
18408494 ATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
387 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
** * * * *
18408537 ACAAAAGTTTGACAAGTTCGATAGTTTGG-CAAGGAACCAAGATAGAAA-AATTCTCATGTAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAACCAAGAGAGAAACAATTCTCACGTAAAT
** * * * *
18408600 AAG-TTTTAATTCAAAGACCAAAATTTGTTTACAAATTGAC-GACATTTTTAGACCAAATGATAC
65 AAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAAC-TATTTAGACCAAATGATGC
*** * * * *
18408663 GATTTCCCGAGCAACAAATGTTTAAAAATTGCTCAAAGGAATGGATCGGCTTGAATACTTTAAGG
129 GATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
18408728 AACAGAAGTTATAAAAGAAATCACAAACGTTTGACAAGTTTGGTAGTTCGGCAAGGAACCAAGAG
194 AATAGAAGTTATAAAAGAAATCACAAA-GTTTGACAAGTTCGGTAGTTCGGCAAGCAACCAAGAG
* * * *
18408793 AGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAATTAACGAA
258 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * ** **
18408858 CTATTTAGACTAAAAGATGTGATTTCTCGAGCCA-GGAATGTTTGAAAAATTATTCGAAGGAATG
323 CTATTTAAAC-AAATGATGTGATTTCCCGAG-CATGGAATGTTCAAAAAATTGCTCGAAGGAATG
* * *
18408922 TATCG-CTTTGAATACTTTAAGGAACAGAAGATATAAAAGAACTC
386 GATCGTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
18408966 GTAAAAGTTTGATCAA-TTTGAAATTTAGGACAAGAACCAAGAGAGAAACGATTCTCACGTAAAT
1 GTAAAAGTTTGA-CAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
18409030 AAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACGAAATGATGCA
65 AAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * * * *
18409095 ATTTCCAGAGCATGAAATGTTCAAAAAATTGCTTGAAGGAATTGATCGTCTTGAAAACTTTAGGG
130 ATTTCCCGAGCATGGAATGTTC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * * * * ** *
18409160 AACT-GAAAATATAAAAGAACTCGTA-AAAGCTTGAAAAGTTTGGAAGTTCAAACCAGC-ACCAA
194 AA-TAGAAGTTATAAAAGAAATC--ACAAAGTTTGACAAGTTCGGTAGTTC-GGCAAGCAACCAA
* * * *
18409222 GAAAGAAACAATTCTAACGTAAATAAGTTTTTATTTCAAAGACCAAAAGTTGTTTAAAAAATGAC
255 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * * ** * * *
18409287 AAACTATTTAGACCAAATGAAT-TGATTTACCAAGCATGGAATGTTCGGAAAATTTCTCTATGGA
320 AAACTATTTA-AACAAATG-ATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGA
*
18409351 ATGGATCGTCTTGAATACTTTTAGGAACCGAAGTTATAAAAGAACTC
383 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* *
18409398 GTAAAA-TTTAGACAATTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTT-GACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
18409462 AAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTTAGACCAAATAAAGTG
65 AAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
18409527 ATATCCCGAGCATGGAATGTTCGGAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGGA
130 ATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
18409592 ATAGAAGTTATAAAAGAAATCACAACAGTTTTACAAGTTCGGTAGTTCGGCAAGCAACCAAGAGA
195 ATAGAAGTTATAAAAGAAATCACAA-AGTTTGACAAGTTCGGTAGTTCGGCAAGCAACCAAGAGA
* ** * *
18409657 AAAACAATTCTCACGTAAATAAGACTTTAATCCGAAGACCAAAAGTTGTTTACAAAATGACAAAC
259 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* ** * *
18409722 TATTTATAACAATTGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAATGAATGGG
324 TATTTA-AACAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGA
* * *
18409787 TCGTCTTGAATTCTTTATGGAACCTAAGTTATAAAAGAACTC
388 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
18409829 GTAAAATTTTGAAAACTT-AAGAAGTTCGG-CTAAGAACTAAGAGAGAAACAATTCCCACTGTAA
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGGAC-AAGAACCAAGAGAGAAACAATTCTCAC-GTAA
* * * * *
18409892 ATAAGTTTTTAATTTAAAAAACAAGA-CTATTTACAAAATGACAAACTATTTAGACCAAATGATG
63 ATAAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * *
18409956 CGATTTCCTGAGCATCGAATGTACAGAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAG
128 CGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * *
18410021 G-ATCCGAAGTTATAAAACAAATCGCAAAAGTTTGACAAGTTCGATAGTTCAGCAAGGAACCAAG
193 GAAT-AGAAGTTATAAAAGAAATCAC-AAAGTTTGACAAGTTCGGTAGTTCGGCAAGCAACCAAG
* * * *
18410085 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAATTTACG
256 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* ** * * * * *
18410150 AACTATTTAGACCAACGGATGTTATTTCCCGAGCCTGGAATGTTCAAAAAATTGTTTGAAGAAAT
321 AACTATTTA-AACAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAAT
** ** *** *
18410215 TAATCGTCTTGAATACACTAAGGAAAAAAAATTATAAAAGAACTC
385 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
18410260 GTAAAAGTTTGACAAGTTCAAAAGTTCGGACAAGAACCTAGAGAGAAACGATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
18410325 AGTTTTTAATTCAAAAACTAAAA-CTTGTTTATAAAATGACAAA
66 AGTTTTTAATTCAAAGACCAAAAGC-TGTTTACAAAATGACAAA
18410368 GTTTTTAATG
Statistics
Matches: 1530, Mismatches: 263, Indels: 76
0.82 0.14 0.04
Matches are distributed among these distances:
427 8 0.01
428 172 0.11
429 154 0.10
430 81 0.05
431 724 0.47
432 380 0.25
433 10 0.01
434 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (429 bp):
GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
TTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
TAGAAGTTATAAAAGAAATCACAAAGTTTGACAAGTTCGGTAGTTCGGCAAGCAACCAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
TTTAAACAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCG
TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
Found at i:18409923 original size:17 final size:18
Alignment explanation
Indices: 18409903--18409943 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
18409893 TAAGTTTTTA
18409903 ATTTA-AAAA-ACAAGACT
1 ATTTACAAAAGACAA-ACT
18409920 ATTTACAAAATGACAAACT
1 ATTTACAAAA-GACAAACT
18409939 ATTTA
1 ATTTA
18409944 GACCAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.24
18 4 0.19
19 8 0.38
20 4 0.19
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
ATTTACAAAAGACAAACT
Found at i:18410564 original size:110 final size:110
Alignment explanation
Indices: 18410370--18410590 Score: 433
Period size: 110 Copynumber: 2.0 Consensus size: 110
18410360 ATGACAAAGT
18410370 TTTTAATGCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAA
1 TTTTAATGCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAA
*
18410435 AAACTTATTTACGTGAGAACCATTTCTCTCTTGGTTCTTGTCTGA
66 AAACTTATTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGA
18410480 TTTTAATGCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAA
1 TTTTAATGCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAA
18410545 AAACTTATTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGA
66 AAACTTATTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGA
18410590 T
1 T
18410591 CTTTCGAACT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.45
Consensus pattern (110 bp):
TTTTAATGCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAA
AAACTTATTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGA
Found at i:18410893 original size:216 final size:215
Alignment explanation
Indices: 18410487--18416817 Score: 4950
Period size: 216 Copynumber: 29.3 Consensus size: 215
18410477 TGATTTTAAT
* * * ** *
18410487 GCATCATTTT-GTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAAAAACTT
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* *** * * * * * *
18410551 ATTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGATCTTTCGAACTAGTAAAAATTTTACT
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
18410616 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTACTTTGAACAATTTTTTG
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * *
18410681 AACATTCTAGGCACGAGAAATC
194 AACATTCCATGCTCGGGAAATC
* ** * * *
18410703 GTATCTTTTGGTCTAAATAGTTCATCAATTTGTAAACAACTTTTGCTCTTTGAATTAAGAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* ** * *
18410768 TTTGCGTGAGAATTGTTTCTCTCTTGGTTCCTTGTCGAACAACCGAACTTGTCAACCTTTTGCGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * *
18410833 TTTCTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* **
18410897 ACATTACATGCTCTTGAAATC
195 ACATTCCATGCTCGGGAAATC
* * * * * * *
18410918 GTAACATTTGGTCTAAATTGTTTATCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACGTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *** * *
18410983 TTTAAGTGAGAATTGTTTCACTCTTGGCTCTTGGAAAAACTTCCAAACTTGTCAAACTTTTACTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * *
18411048 GTTCTTTCAAAACTTCAGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTCTTCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
18411113 ATAATCCATGCTCAGGAAATC
195 ACATTCCATGCTCGGGAAATC
* *
18411134 ACATCTTTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * *** * *
18411199 TTTACGTGAGAATTGTTTCTCTCTTGGTGCTTGTCCAAACTTTTAAACTTTTCAATCTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACGA
** * * * *
18411264 GTTCTTTTATATTTTTGGTTTCTTAAAGTTTTCAAGACGATCCATTCCTTCAAGCAA-TTTTCTG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-G
**
18411328 AACATTCCATGCTTTGGAAATC
194 AACATTCCATGCTCGGGAAATC
* * ** * * *
18411350 GTATCATTTCATCTAAATAGCTTGTCATTTTATAAACAACTTTTAG-CTTTTGAATTAAAAACTT
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTT
** * * * * * *
18411414 ATTTACGTGAGAATCATTTGTCACTTGGTTCTTGTTCGAAATTTCAAACTAGTCAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-TCGAACTTCCGAACTTGTCAAACTTTTACG
* * *
18411479 AGTTCTTTTATATA-TTCGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAACAATTTTTC
129 AGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* *
18411543 AAACATTCCAGGCTCGGGAAATC
193 GAACATTCCATGCTCGGGAAATC
* * * * * * * *
18411566 ACATCTTTTAGTCTAAATAGTTCGTTAGTTTGCAAGCAACTTTTTGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * **
18411631 TTTACATGAGAATTGTTTCTCTCTTGGTTCCTTGCCGAACTACCGAACTTGTCAAACATTTGTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * *
18411696 TTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAAGTCGAATTCATTCCTTCGAGCAA-TTTTCG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGAGCAATTTTTCG
* * *
18411760 AACATTCCTTACTCGAGAAATC
194 AACATTCCATGCTCGGGAAATC
* * * * * *
18411782 ACATCATTTGGTCTAAATGGTTTCTCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
18411847 TTTGCGAGAGAATTGTTTCTCTCATGGTTC-T-T--AA---CCAAACTT-TCGAACTTAT-C-A-
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTCCGAACTTGTCAAACTTTTACGAG
*** * * * * * * *
18411901 AAATTTTACAACTTTGGATCCTTAAAGTATTTAAGACGATCCATTCCTTCAAACAAATTTTCGAA
131 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
*
18411966 CATTCC-TCGCTCGGGGAATC
196 CATTCCAT-GCTCGGGAAATC
* * * ** * * * *
18411986 GCATCATATT-GTCTAAATAGTTTATCATTTTATAAACAACAATTAGTATTTAAATTAAAAAGTT
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * ** * *** ** **
18412050 ATGTT-CGTCA-ATTTGTAAACAGCT-TTAGG-TCTT-T-GAA-TTAAAAACTTGT-TTACGTGA
65 AT-TTACGTGAGAATTGT-TTC-TCTCTT-GGTTCTTGTCGAACTTCCGAACTTGTCAAAC-TTT
* * * ** * *
18412107 TA--A-TTATTTTCT--CTT-GGTTCCTTGCCGAACTACCGAACTTTTCAA-ACTTTTGCAATTT
125 TACGAGTTCTTTTATAACTTCGGTTCCTT----AA--A--G---TATTCAAGAC-GAT-CCATTC
** ** * ** *
18412165 CTTTTATAAATTTGGTTCCTTAA-ATT--A--CTCAAGACGATC
177 CTTCGAGCAATTT--TT-C-GAACATTCCATGCTCGGGA-AATC
* * * ** *
18412204 -CATTCCTTCGAG-C--AAT--TTCTGAACATTTTATGCTCGGGAAACCGCATCATT--TCTTCT
1 GCA-TCTTTTG-GTCTAAATAGTT-TG-TCA-TTT-TG-T----AAACAAC-T-TTTGGTCTT-T
* ***** * * * * ** *** **** *
18412261 -AAATAGTTTGTCATTT-CGT-A-AATAGTTT-TGGTCTTTG-AATT-AAAAACTTATTTACGTG
52 GAATTAAAAACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGTCGAACTTCCGAACTTG
** ** * * ** * ** * * * *
18412319 AGAATTGTTTCTCTCTTAGTTCTTAGCCA-AACTTCTG-AACTTGGCAAAAT-TTTACGA-GTTC
116 TCAA-ACTTT-T-AC-GAGTTCTT--TTATAACTTCGGTTCCTT---AAAGTATTCAAGACGATC
* * * * * * * *
18412380 TATTCTAACTTCGATTCCTTAAAGTATTCAAAACGA-TCCATTCCTTCGAGCAATTTTC
172 CATTC---CTTCGA--GC---AATTTTTC-GAAC-ATTCCA-TGC-TCG-GGAA--ATC
* *
18412438 AAAACATTCCATGCTCCGGAAATCGCATCATCTTGTCTAAATAGTTTGTCATTTT-TAAACAACT
1 ---GCA-T-C-T--T-------T---------TGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
18412502 TTTGGTCTTTGAATTAAAACCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCTGAACT
42 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACT
** * * *
18412567 TTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTACTTAAAGTACTCAAGATGAT
106 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* *
18412632 CCATTCCTTCGAGTAA-TTTCCGAACATTCCATGCTCGGGAAATC
171 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * * * * *
18412676 CCATCATTTT-CTCTAAATTGTTTTTCATTTTGTAAA-TAGTTTTGGTCTTTTAATTAAAAACTA
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * *
18412739 ATTTACGTTAGAATTGTATCTCTCTTGGTTC-T-T--AGCTT---AACTT-TCGAAC-TTTACGA
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * *
18412795 GTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTCTCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
*
18412860 ACATTCCATGCTTCGAGAAATC
195 ACATTCCATGC-TCGGGAAATC
* * * ** *
18412882 ACATCATTTT-GTCTAAATAGTTTGTCATTTTGTAAATAGCTTTTGGTCTTTGAAAGAAAACCTT
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
18412946 ATTTACATGAGAATTGTTTATCTCTTGGTTCTTCGTAGAACTTCCAAACTTGTCAAAATTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACG
* ** * * * * ** ** **
18413011 AGTTGTTTTATAACTTCGGTAACTAAAAGAATTCAA-AGTGATCCAGTCCTTTTATTAATTTCCC
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTC
* ** *
18413075 GAAAATTCCATGCTTTGGAAAAC
193 GAACATTCCATGCTCGGGAAATC
* * * * * *
18413098 ACATCATTAGGTCTAAATAGTTTGTCATTTTTTAAACAAATTTTGGTCTTTGAATTCAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * **
18413163 TTTACGTGAGAATTGTTTCTCTGTTAGCTCTTGTCCGAACTTCCGAACTTTTCAAACTTTTTTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACGA
* ** * * * *
18413228 GTTATTTTATATTTTCGGTTCCTT-CATTTTTCAAGACAATCCATTCCTTCGAGCAATTTTTCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* *
18413292 AGATTACATGCTCGGGAAATC
195 ACATTCCATGCTCGGGAAATC
* * * *
18413313 ACATCATTTT-GTCTAAATAGTTTGTCA-TTTGATAAATAACTTTTAGTCTTTCAATTAAAAACT
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACT
* ** * **
18413376 TATTTATGTGAGAATCATTTCTCT-TTCGGTTCTTGTCCAAACTTTTGAACTTGTCAAACTTTTA
64 TATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
18413440 CAAGTTCTTTTATAACTTCAGTTCCTTAAATTATTCAAGATGATCTATTCCGTCGAACAATTTTT
127 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * *
18413505 TGAACATTCCAGGCACGAGAAATC
192 CGAACATTCCATGCTCGGGAAATC
* ** * * * *
18413529 ACATCTTTTGGTCTAAATAGTTCATCAATTTCTGAACAACTTTTGCTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * ** **
18413594 TTTACGTGAGAATTGTTTCTCTCTTTGTTCCTTGTCGAACTACTAAACTTGTCAAACTTTTGTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * ** * *
18413659 TTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAGGATATATTTCTTCCAGCAA-TTTTCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
18413723 ACATTCCATGCTCGGGAAATC
195 ACATTCCATGCTCGGGAAATC
* * * * *
18413744 GCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18413809 TTTACATGAGAATTATATCTCTCTTGGTTCTTGGTCGAACTTCCGAAGTTGTCAAAATTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18413874 GTTATTTTATAACTTTGGTTCCTTACAGTATTCAAGACGACCCATTCATTCGAGTAATTTTTTGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * *
18413939 AGA-TCTCAAGTTCTGGAAATC
195 ACATTC-CATGCTCGGGAAATC
* * * *** *
18413960 GTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTCAATCTTTGAACTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * **
18414025 TTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTCGAACTTGTCAAACTTTTATTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18414090 GTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATC-ACCCATTCCATCAAGTAATTTTTCG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTCG
* * * * *
18414154 AATACTT-CGTGTTGGGGAAATT
194 AACA-TTCCATGCTCGGGAAATC
* * * *
18414176 GAATCTTTTGGTCTTAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCATTT-AATTAAAAATTT
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTT
* * * * *
18414240 ATTTACGTGAGAA-T-TTTCTCTCTTGGTTCTTGTCCAAACTTTCAAACTTTTCAATCTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACG
** ** * * * *
18414303 AGTTCTTTTATATTTTCCATTCCTTAAAGTTTTCAAGATGATCCATTCCTTCAAGTAATATTTT-
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT-TTTTC
* *
18414367 GAACATTCCATGATCCGGAAATC
193 GAACATTCCATGCTCGGGAAATC
* * ** * * *
18414390 GCATCATTTGGTCTAAATACTTTCCCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18414455 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAAATTCTCAAAATTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * * * *
18414520 GATCTTTTATAATTTCAGTTCCTCAATGTATTCAAGACGATCTATTCCTTCAAACAAATTTTCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * *
18414585 ACGTTTCAGGCTAGGGAAATC
195 ACATTCCATGCTCGGGAAATC
* * * ** *
18414606 GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAATTTTTTCTCTTTGAATTAGAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
18414671 TTTACGTGAGAATTGTTTCTCTCTTTGTTCCTTGCCGAACTACCGAACTTGTCAAACTTTTTC-A
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* *
18414735 TTTCCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCG
130 GTT-CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
18414799 AACATTCCATGCTCGGGAAATC
194 AACATTCCATGCTCGGGAAATC
* * * * *
18414821 GCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
18414886 TTTACATGAGAATTATTTCTCTCCTGGTTCTTGGTCGAACTTCCGAAGTTGTCAAAATTTTTCGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * *
18414951 GTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA--CATTCATTCAAGCAATTTTT-GC
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * *
18415013 AGATCCCAGGTTTGGGAAATC
195 ACATTCCATGCTCGGGAAATC
* *
18415034 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
18415099 TTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTCGAACTTGTCAAACTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * *
18415164 GTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATC-ACCCATTCCATCAAGCAA-TTTTCT
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTC-
* * *
18415227 GAATAGTT-CGTGCTCGGGAAATT
193 GAACA-TTCCATGCTCGGGAAATC
* * * * *
18415250 GAATCTTTTGGTCTTAGTAATTTGTCATTTTGTAAACAACTTTTGGTCATTT-AATTAAAAATTT
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTT
* * * * *
18415314 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTTCAAACTTTTCAATCTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACG
** ** * * *
18415379 AGTTCTTTTATATTTTCCATTCCTTAAAGTTTTTAAGATGATCCATTCCTTCGAGCAATATTTT-
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT-TTTTC
*
18415443 GAACATTCCATGATCGGGAAATC
193 GAACATTCCATGCTCGGGAAATC
* * * * * *
18415466 GCATCATTTGGTCTAAATACTTTCTCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * *
18415531 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGCCGAACTTCCGAACTTGTCAAAATTTTATGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * **
18415596 GTTCTTTTATAACTCCGGTTCCTAAAAGTATTCAATACGATCTATTTCTTCGAACAATTTCCCGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
**
18415661 ACATTCCATGCTTAGGAAATC
195 ACATTCCATGCTCGGGAAATC
** * *
18415682 AAAAAC-TTTGGTCTAAATAGTTTGTCATTTT-TAATCAAC-TTTGTGTCTTTGAATTAAAAACT
1 -GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACT
* * * * * *
18415744 TATTTACGTGAGAAATGTTTCTCTGTTAGTTCTTGTCCGAACTGCTGAACTTTTCAAACTTTTAC
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * * *
18415809 AAGTTGTTTTATATTTTCGGTTCCTTAAATTTTTCAAGACGATCCATTTCTTCGAGCAATTTTTC
128 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* *
18415874 GAACATTACATGCTCGAGAAATC
193 GAACATTCCATGCTCGGGAAATC
* * * ** *
18415897 GCATCATTTT-GTCTAAATAGATTGTCATTTTATAAATAACTTTCAGTTTTTGAATTAAAAACTT
1 GCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * * **
18415961 ACTTACGTGAGAATTATTTCTATTTTGGTTCTTGTCCAAACTTTTGAACTTGTCAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
18416026 AGTTATTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCTATTCCTTCGAACAATTTTTCG
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * *
18416091 AACATTCCAGGCACGAGAAATC
194 AACATTCCATGCTCGGGAAATC
* * *
18416113 GCATCTTTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGCTGTTTGAATTAAAAACTTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * **
18416178 TTTACGTGATAATTGTTTCTCTCTTGGTTCCTTGTCGAACTACTGAACTTGTCAAACTTTTGTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCGAACTTCCGAACTTGTCAAACTTTTACGA
* ** * * * * *
18416243 TTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAAACAATCTATTCCTTCCA-CTAA-TTTCCG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTTCG
*
18416306 AATATTCCATGCTCGGGAAATC
194 AACATTCCATGCTCGGGAAATC
* * * * * * * *
18416328 GTATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTAAATTAAAAAATTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
18416393 TTTACGTGAGAGTTATTTCTCTCCTGGTTCTTGGTCAAACTTCCAAAGTTGTCAAACTTTTACAA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * *
18416458 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTCATTCAAGCAA-TTTTCTG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-G
* * * * **
18416522 AAGATTCAAAGATCAAGAAATC
194 AACATTCCATGCTCGGGAAATC
* * * * *
18416544 GTATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAAATTA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18416609 TTTACATGAGAATTGTTTCACCCTTGGCTCTTGGAT-GAACTTTCGAACTTGTCAAACTTTTACG
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G-TCGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * * *
18416673 AGTTCTTTCATAACTTTGGTTCCTTAAAGAATTTAAGATGATCCATTCCATCAAGCAATTTTCCG
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * *
18416738 AACAGTCTATGCTCGAGAAATC
194 AACATTCCATGCTCGGGAAATC
* * * *
18416760 GCATCTTTTGGTCTTAATAGTTTTTCATTTTGTAAACAACTTTTGGACATTGAATTAA
1 GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
18416818 TTCCGAACTT
Statistics
Matches: 4850, Mismatches: 1045, Indels: 440
0.77 0.16 0.07
Matches are distributed among these distances:
203 21 0.00
204 167 0.03
205 32 0.01
206 55 0.01
207 56 0.01
208 16 0.00
209 14 0.00
210 3 0.00
211 2 0.00
212 6 0.00
213 184 0.04
214 264 0.05
215 1090 0.22
216 2503 0.52
217 157 0.03
218 24 0.00
219 6 0.00
220 10 0.00
221 18 0.00
222 11 0.00
223 23 0.00
224 2 0.00
225 6 0.00
226 3 0.00
227 2 0.00
228 9 0.00
230 2 0.00
231 8 0.00
232 3 0.00
233 4 0.00
234 3 0.00
235 2 0.00
238 6 0.00
239 1 0.00
240 3 0.00
241 3 0.00
242 4 0.00
243 7 0.00
244 3 0.00
245 2 0.00
249 1 0.00
250 8 0.00
251 6 0.00
252 23 0.00
253 17 0.00
254 12 0.00
255 13 0.00
256 5 0.00
257 4 0.00
258 14 0.00
259 3 0.00
260 5 0.00
261 2 0.00
262 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (215 bp):
GCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTCCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
CATTCCATGCTCGGGAAATC
Found at i:18411314 original size:431 final size:430
Alignment explanation
Indices: 18410487--18418482 Score: 5387
Period size: 431 Copynumber: 18.4 Consensus size: 430
18410477 TGATTTTAAT
* * * * ** *
18410487 GCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* *** * * * * * * * *
18410552 TTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGATCTTTCGAACTAGTAAAAATTTTACTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * *
18410617 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTACTTTGAACAATTTTTTGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGA
* * * * * ** *
18410682 ACATTCTAGGCACGAGAAATCGTATCTTTTGGTCTAAATAGTTCATCAATTTGTAAACAACTTTT
195 ACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * **
18410747 GCTCTTTGAATTAAGAACTTATTTGCGTGAGAATTGTTTCTCTCTTGGTTCCTTGT-CGAACAAC
260 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCAAACTTC
* * * *
18410811 CGAACTTGTCAACCTTTTGCGATTTCTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
324 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * **
18410876 ATTCCTTCGAGCAATTTTCAAACATTACATGCTCTTGAAATC
389 ATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATC
* * * * * *
18410918 GTAACATTTGGTCTAAATTGTTTATCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACGTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *** * *
18410983 TTTAAGTGAGAATTGTTTCACTCTTGGCTCTTGGAAAAACTTCCAAACTTGTCAAACTTTTACTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * *
18411048 GTTCTTTCAAAACTTCAGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTCTTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTCGA
* * * * *
18411113 ATAATCCATGCTCAGGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTT
195 ACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* **
18411178 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTGCTTGTCCAAACTTTT
260 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTCC
* * * ** * * *
18411243 AAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTTGGTTTCTTAAAGTTTTCAAGACGATCCA
325 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* **
18411308 TTCCTTCAAGCAATTTTCTGAACATTCCATGCTTTGGAAATC
390 TTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATC
* ** * * *
18411350 GTATCATTTCATCTAAATAGCTTGTCATTTTATAAACAACTTTTAG-CTTTTGAATTAAAAACTT
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTT
** * * ** * * * *
18411414 ATTTACGTGAGAATCATTTGTCACTTGGTTCTTGTTCGAAATTTCAAACTAGTCAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
* * *
18411479 AGTTCTTTTATATA-TTCGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAACAATTTTTC
130 AGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTC
* * * * * * * * *
18411543 AAACATTCCAGGCTCGGGAAATCACATCTTTTAGTCTAAATAGTTCGTTAGTTTGCAAGCAACTT
193 GAACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
18411608 TTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTG-CCGAACT
258 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCAAACT
* * ** * * *
18411672 ACCGAACTTGTCAAACATTTGTGATTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAAGTCGAA
322 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-A
* * * *
18411737 TTCATTCCTTCGAGCAATTTTCGAACATTCCTTACTCGAGAAATC
386 TCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
18411782 ACATCATTTGGTCTAAATGGTTTCTCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * ** * * *
18411847 TTTGCGAGAGAATTGTTTCTCTCATGGTTCTTAACCAAACTTTCGAACTTATC-AA-----A--A
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * *
18411904 ----TTTTACAACTTTGGATCCTTAAAGTATTTAAGACGATCCATTCCTTCAAACAAATTTTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCGA
* * * * **
18411965 ACATTCC-TCGCTCGGGGAATCGCATCATATT-GTCTAAATAGTTTATCATTTTATAAACAACAA
195 ACATTCCAT-GCTCGGGAAATCGCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * ** *
18412028 TTAGTATTTAAATTAAAAAGTTATGTT-CGTCA-ATTTGTAAACAGCT-TTAGG-TCTTTGAATT
258 TTGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAATTGT-TTC-TCTCTT-GGTTC-TTG---T
** **** * * **** * * ** *
18412089 AAAAACTTGTTTACGTGAT-AATTA-TTTTCTCTTG-GTTCCTTGCCGAACTACCGAACTTTTCA
315 CCAAACTTCCGAACTTG-TCAA--ACTTTT-AC--GAGTT-CTTTTATAACTTCGGTTC-CTT-A
* * ** * ** ** **** * * *
18412151 AACTTTTGCAATTTCTTTTATAAATTTGGTTCCTTAAATTACTCAAGACGA-TCCATTCCTTCGA
371 AAGTATT-CAA-GAC---GATCCA-TTCCTTCGAGCAATT-TTCGA-AC-ATTCCA-TGC-TCG-
* *
18412215 GCAATTTC
424 GGAA-ATC
* * * ** ** * * *
18412223 TGAACAT-TTTATGCTCGGGAAACCG--CATCATTTCTTCTAAA-TA-GTTT-GTCATTTCG---
1 -G--CATCATT-TGGTC--TAAATAGTTTGTCA-TT-TTGTAAACAACTTTTGGTC-TTT-GAAT
* * ** ** * * * * * * *
18412279 TAAATAGTT-TTGGT-C-TTTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTC--TCTT-A
56 TAAAAACTTATT--TACGTGAGAATT----GTTTCTCT-CTTG-G--TTCTTGGC-CGAACTTCC
** * * * ** * ** ** * *
18412337 GTTCTTAGCCAAACTTCT--GAACTTGGCAAAATTTTACGAGTTCTATTCTAACTTCGATTCCTT
110 GAACTT-GTCAAACTTTTACG-AGTT--C----TTTTATAACTTCGGTTC---CTTAAAGT-ATT
* * ** ** * * *
18412400 AAAGTATTCAAAACGATCCATTCCTTCGAGCAATTTTCAAAACATTCCATGCTCCGGAAATCGCA
163 CAAG-A--CGATCCATTCCTT-----CGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCGCA
* *
18412465 TCATCTT-GTCTAAATAGTTTGTCATTTT-TAAACAACTTTTGGTCTTTGAATTAAAACCTTATT
219 TC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
** **
18412528 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCTGAACTTTTGAACTTGTCAAACTTTTACGAGT
283 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * * *
18412593 TCTTTTATAACTTCGGTTACTTAAAGTACTCAAGATGATCCATTCCTTCGAGTAATTTCCGAACA
348 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAACA
18412658 TTCCATGCTCGGGAAATC
413 TTCCATGCTCGGGAAATC
* ** * * * * * *
18412676 CCATCATTTTCTCTAAATTGTTTTTCATTTTGTAAA-TAGTTTTGGTCTTTTAATTAAAAACTAA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
18412740 TTTACGTTAGAATTGTATCTCTCTTGGTTCTT-----AGCTT---AACTT-TCGAAC-TTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* *
18412795 GTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTCTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCGA
* * * *
18412860 ACATTCCATGCTTCGAGAAATCACATCATTTT-GTCTAAATAGTTTGTCATTTTGTAAATAGCTT
195 ACATTCCATGC-TCGGGAAATCGCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
** * * *
18412924 TTGGTCTTTGAAAGAAAACCTTATTTACATGAGAATTGTTTATCTCTTGGTTCTTCGT--AGAAC
258 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCCA-AAC
* * * ** * * *
18412987 TTCCAAACTTGTCAAAATTTTACGAGTTGTTTTATAACTTCGGTAACTAAAAGAATTCAA-AGTG
321 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CG
* ** ** * * ** *
18413051 ATCCAGTCCTTTTATTAATTTCCCGAAAATTCCATGCTTTGGAAAAC
385 ATCCATTCCTTCGAGCAATTT-TCGAACATTCCATGCTCGGGAAATC
* * * * *
18413098 ACATCATTAGGTCTAAATAGTTTGTCATTTTTTAAACAAATTTTGGTCTTTGAATTCAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * **
18413163 TTTACGTGAGAATTGTTTCTCTGTTAGCTCTTGTCCGAACTTCCGAACTTTTCAAACTTTTTTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* ** * * * *
18413228 GTTATTTTATATTTTCGGTTCCTT-CATTTTTCAAGACAATCCATTCCTTCGAGCAATTTTTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGA
* * * *
18413292 AGATTACATGCTCGGGAAATCACATCATTTT-GTCTAAATAGTTTGTCA-TTTGATAAATAACTT
195 ACATTCCATGCTCGGGAAATCGCATC-TTTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTT
* * * **
18413355 TTAGTCTTTCAATTAAAAACTTATTTATGTGAGAATCATTTCTCT-TTCGGTTCTTGTCCAAACT
258 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGTCCAAACT
** * * * *
18413419 TTTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAATTATTCAAGATGAT
322 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * * * *
18413484 CTATTCCGTCGAACAATTTTTTGAACATTCCAGGCACGAGAAATC
387 CCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* * ** * * * *
18413529 ACATCTTTTGGTCTAAATAGTTCATCAATTTCTGAACAACTTTTGCTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * ** **
18413594 TTTACGTGAGAATTGTTTCTCTCTTTGTTCCTT-GTCGAACTACTAAACTTGTCAAACTTTTGTG
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
* * * ** * *
18413658 ATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAGGATATATTTCTTCCAGCAATTTTCGA
130 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGA
* * * * *
18413723 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTT
195 ACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
18413788 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTATATCTCTCTTGGTTCTTGGT-CGAACTTC
260 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCCAAACTTC
* * * * * *
18413852 CGAAGTTGTCAAAATTTTACGAGTTATTTTATAACTTTGGTTCCTTACAGTATTCAAGACGACCC
324 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
18413917 ATTCATTCGAGTAATTTTTTGAAGA-TCTCAAGTTCTGGAAATC
389 ATTCCTTCGAGCAA-TTTTCGAACATTC-CATGCTCGGGAAATC
* * *** *
18413960 GTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTCAATCTTTGAACTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * **
18414025 TTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTCGAACTTGTCAAACTTTTATTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18414090 GTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATC-ACCCATTCCATCAAGTAATTTTTCG
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAA-TTTTCG
* * * * * * * *
18414154 AATACTT-CGTGTTGGGGAAATTGAATCTTTTGGTCTTAGTAGTTTGTCATTTTGTAAACAACTT
194 AACA-TTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
18414218 TTGGTCATTT-AATTAAAAATTTATTTACGTGAGAA-T-TTTCTCTCTTGGTTCTTGTCCAAACT
258 TTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACT
* * * * ** ** * *
18414280 TTCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTCCATTCCTTAAAGTTTTCAAGATGAT
322 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * *
18414345 CCATTCCTTCAAGTAATATTTTGAACATTCCATGATCCGGAAATC
387 CCATTCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGGGAAATC
* ** * * *
18414390 GCATCATTTGGTCTAAATACTTTCCCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18414455 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAAATTCTCAAAATTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * * *
18414520 GATCTTTTATAATTTCAGTTCCTCAATGTATTCAAGACGATCTATTCCTTCAAACAAATTTTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCGA
* * * * * * *
18414585 ACGTTTCAGGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAATTTTT
195 ACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
** * * * *
18414650 TCTCTTTGAATTAGAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCCTTG-CCGAACTAC
260 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCAAACTTC
* * *
18414714 CGAACTTGTCAAACTTTTTC-ATTTCCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
324 CGAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
18414778 CATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATC
388 CATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATC
* * * *
18414821 GCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
18414886 TTTACATGAGAATTATTTCTCTCCTGGTTCTTGGTCGAACTTCCGAAGTTGTCAAAATTTTTCGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18414951 GTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA--CATTCATTCAAGCAATTTTTGCA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAA
* * * * * *
18415014 GATCCCAGGTTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
196 CATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * ** * * *
18415079 GTCTTTGAACTAAAAACTTATTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTCG
261 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTCCG
* * * *
18415144 AACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATC-ACCCA
326 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCA
* * * * *
18415208 TTCCATCAAGCAATTTTCTGAATAGTT-CGTGCTCGGGAAATT
390 TTCCTTCGAGCAATTTTC-GAACA-TTCCATGCTCGGGAAATC
* * * * * *
18415250 GAATCTTTTGGTCTTAGTAATTTGTCATTTTGTAAACAACTTTTGGTCATTT-AATTAAAAATTT
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTT
* * * * * *
18415314 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTTCAAACTTTTCAATCTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
** ** * * * *
18415379 AGTTCTTTTATATTTTCCATTCCTTAAAGTTTTTAAGATGATCCATTCCTTCGAGCAATATTTTG
130 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT-TTTCG
* * * * * *
18415444 AACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATACTTTCTCATTTTGTAAATAGCTTT
194 AACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* *
18415509 TCGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-TGCCGAACTT
259 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CCAAACTT
* * * * *
18415573 CCGAACTTGTCAAAATTTTATGAGTTCTTTTATAACTCCGGTTCCTAAAAGTATTCAATACGATC
323 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * * * **
18415638 TATTTCTTCGAACAATTTCCCGAACATTCCATGCTTAGGAAATC
388 CATTCCTTCGAGCAATTT-TCGAACATTCCATGCTCGGGAAATC
* ** *
18415682 -AAAAACTTTGGTCTAAATAGTTTGTCATTTT-TAATCAAC-TTTGTGTCTTTGAATTAAAAACT
1 GCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG-GTCTTTGAATTAAAAACT
* * * * * * *
18415744 TATTTACGTGAGAAATGTTTCTCTGTTAGTTCTTGTCCGAACTGCTGAACTTTTCAAACTTTTAC
64 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTAC
* * ** * * *
18415809 AAGTTGTTTTATATTTTCGGTTCCTTAAATTTTTCAAGACGATCCATTTCTTCGAGCAATTTTTC
129 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTC
* * * * *
18415874 GAACATTACATGCTCGAGAAATCGCATCATTTT-GTCTAAATAGATTGTCATTTTATAAATAACT
193 GAACATTCCATGCTCGGGAAATCGCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
** * * * * *
18415938 TTCAGTTTTTGAATTAAAAACTTACTTACGTGAGAATTATTTCTATTTTGGTTCTTGTCCAAACT
257 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACT
** * *
18416003 TTTGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGAT
322 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * *
18416068 CTATTCCTTCGAACAATTTTTCGAACATTCCAGGCACGAGAAATC
387 CCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* * * *
18416113 GCATCTTTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGCTGTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * **
18416178 TTTACGTGATAATTGTTTCTCTCTTGGTTCCTT-GTCGAACTACTGAACTTGTCAAACTTTTGTG
66 TTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTCCGAACTTGTCAAACTTTTACG
* ** * * * * *
18416242 ATTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAAACAATCTATTCCTTCCA-CTAATTTCCG
130 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCG
* * * * * * *
18416306 AATATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTT
194 AACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
18416371 TGGTCTTTAAATTAAAAAATTATTTACGTGAGAGTTATTTCTCTCCTGGTTCTTGGT-CAAACTT
259 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCCAAACTT
* * * *
18416435 CCAAAGTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACC
323 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * * * * * **
18416500 CATTCATTCAAGCAATTTTCTGAAGATTCAAAGATCAAGAAATC
388 CATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATC
* * * *
18416544 GTATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAAATTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * ** *
18416609 TTTACATGAGAATTGTTTCACCCTTGGCTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18416674 GTTCTTTCATAACTTTGGTTCCTTAAAGAATTTAAGATGATCCATTCCATCAAGCAATTTTCCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGA
* * * * *
18416739 ACAGTCTATGCTCGAGAAATCGCATCTTTTGGTCTTAATAGTTTTTCATTTTGTAAACAACTTTT
195 ACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *** ** * * *
18416804 GGACATTGAATTAATTCCGAACTTT-C---A-AAAT-TTTCAATCTTTTACGAGTTCTT-T-TAT
260 GGTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTC--TCTCTT--G-GTTCTTGTCCA-
** * * * * * ** ** ** ** * *
18416861 ATTTTCC--A-TTCCTTAAAGTTTT-CAAGATGATCCATTCCTTCGAGCAATTGTTTGAA-CATT
318 AACTTCCGAACTT-GTCAAACTTTTACGAGTTCTTTTATAACTTCG-G---TTCCTTAAAGTATT
* * **** * * ** * *
18416921 C--CATGAT-C-TGGAAATCGCAAC-ATTTGGTCTAAATACATTCTCAT--TTTGTAAATA
378 CAAGACGATCCAT-TCCTTCG-AGCAATTT--TC--GA-ACATTC-CATGCTCGGGAAATC
* * * ** * * * *
18416975 GC-T--TTTGGTCTTTGAATTAAAAACATTT-TAGGAGTTTT-TTTA-TA-TTTTCAGTTCCTTA
1 GCATCATTTGGTC-------TAAATA-GTTTGT--CA-TTTTGTAAACAACTTTT--GGTCTTTG
* * * * * *** ** * *
18417033 AAGTTTTCAAGAC-GATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTTGG--GAA-AT
53 AA---TTAAAAACTTAT---TTACGT-GAG-AATTGTTTCTCTC-TT-GGTTCTTGGCCGAACTT
* * **
18417093 -CGCATCATTTTGTCTAAATAGTAACTTATTTTCGCGAGTATCGTTTT-TCTCTTGGTTCTTTTA
108 CCG-A--A-CTTGTC-----A--AAC---TTTT-ACGAGT-TC-TTTTATAAC----TT------
* * ** * *
18417156 TAACTCTGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAATAATTTTTTGAACATTCCAG
146 -----C-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCAT
* * ** * * * * *
18417221 GAAT-GAGAAATCGCATCTTTCAGTCAAAATAGTTCGACAATTTGTAAACAACTTTTGGCCTTTG
204 G-CTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * * * *
18417285 AATTCAAAACTTATTTACATGAGAATTTTTTCTCTCTTGTTTCCATG-CCGAACTACCGAACTTG
268 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCAAACTTCCGAACTTG
* * * * *
18417349 ACAAACTTTTGA-GATTTCTTTTATAACTTTGGGTCCTTAAAGTATTCAAGATGATCCATTCCTT
332 TCAAACTTTT-ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* ** * * *
18417413 CGAGCAATTTTTCGAGCATTCCACACTTGAGAAATT
396 CGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATC
* ** * * *
18417449 ACATCATTTTATCTAAATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAGAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* ** * * *
18417514 TTTACATGAGAATCATTTCTCTCTTGGTTCTTGTCCAAACATT-CGAACTTGTCAAACTTTTACT
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTCCGAACTTGTCAAACTTTTACG
* * * * * * * ** * * *
18417578 AGTTCTTTAATAATTTTGATTCCATAATGTATTCAAGATGATGAATTCCTTCAAACAATTTTTCA
130 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCG
* * * ** * ** * * *
18417643 AAGATTCCAAGCTCGGGAAATCGTATCACTTGGTGTAAATAGTTCATAAATTTGTAAACAAATTT
194 AACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * *
18417708 TAGTCTTTGAATTAAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCCTTGT-TAAAC-
259 TGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCAAACT
* ** * * * * *
18417771 T----A-TCG--AAACTTTTGTG-GATTATTTTATAACTTTGGTTCTTTGAAGTATTTAAGACGA
322 TCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * *
18417828 TCCAATCCTTCGAGCAA-TTTCTGAACATTCCATGCTCGGAAAAAC
386 TCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATC
* * * * **
18417873 GCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAATAGCTTTTTGAATTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * **
18417938 TTTACTTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCCAAA-TTTTAAA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGT-CAAACTTTTACG
* * * * * *
18418002 AGTTCTTTTATAACTCCGATTCC-TATAAGTATGCAAGACGATCCATTCCTTCGAGCAGTATCCT
130 AGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-
* ** * * ** *
18418066 GAATATTCCATGCTTTGGAAATCACATCCTTTGCCCTAAATAGTTTGTCATTTTTTAAACAACTT
193 GAACATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
** * *
18418131 TCAGTCTTTG-ATATAAAACCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTG-CC---CG
258 TTGGTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAAC-
** * * *
18418191 TT-CGAACATT-TCAAACTTTTACGAGTTCTTTTATATTTTTGGTTCCTTAAAGTTTTAAAGACG
321 TTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * *
18418254 ATCCATTCCTTTGA-CAAAATTTTGGAACATTACATGCTCGAGAAATC
385 ATCCATTCCTTCGAGC--AATTTTCGAACATTCCATGCTCGGGAAATC
* * * * * *
18418301 ACATCATTTCGTCTAAATAGTTTTTTATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * * * * *
18418366 TTTACGTGAGAATCATTTCTCTCTTGGTTATTGTCAGAACTTTCGAACTTCTCAAACTTTTAAGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
18418431 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
18418483 TCAATTTGTA
Statistics
Matches: 5864, Mismatches: 1361, Indels: 683
0.74 0.17 0.09
Matches are distributed among these distances:
419 30 0.01
420 163 0.03
421 144 0.02
422 56 0.01
423 97 0.02
424 238 0.04
425 66 0.01
426 5 0.00
427 74 0.01
428 407 0.07
429 201 0.03
430 386 0.07
431 1888 0.32
432 1215 0.21
433 119 0.02
434 3 0.00
435 20 0.00
436 9 0.00
437 21 0.00
438 8 0.00
439 8 0.00
440 7 0.00
441 14 0.00
442 14 0.00
443 17 0.00
444 29 0.00
445 17 0.00
446 18 0.00
447 11 0.00
448 21 0.00
449 17 0.00
450 19 0.00
451 9 0.00
452 12 0.00
453 5 0.00
454 4 0.00
455 8 0.00
456 8 0.00
457 10 0.00
458 5 0.00
459 9 0.00
460 13 0.00
461 8 0.00
462 10 0.00
463 5 0.00
464 17 0.00
465 10 0.00
466 4 0.00
467 19 0.00
468 17 0.00
469 7 0.00
470 15 0.00
471 20 0.00
472 5 0.00
473 113 0.02
474 33 0.01
475 44 0.01
476 79 0.01
477 25 0.00
478 8 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (430 bp):
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAA
CATTCCATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATC
Found at i:18416815 original size:647 final size:644
Alignment explanation
Indices: 18410487--18416817 Score: 5233
Period size: 647 Copynumber: 9.8 Consensus size: 644
18410477 TGATTTTAAT
* * * * * ** *
18410487 GCATCATTTTGTCTAAGTAATTTGTCATTTTATAAACAACAATTAGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* *** * * * * * *
18410552 TTTACGTAAGAACCATTTCTCTCTTGGTTCTTGTCTGATCTTTCGAACTAGTAAAAATTTTACTA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACTTCCGAACTTGTCAAACTTTTACGA
* * * *
18410617 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTACTTTGAA-CAATTTTTTG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CCTTCAAGCAATTTTCTG
* * * * * ** *
18410681 AACATTCTAGGCACGAGAAATCGTATCTTTTGGTCTAAATAGTTCATCAATTTGTAAACAACTTT
194 AACATTC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * ***
18410746 TGCTCTTTGAATTAAGAACTTATTTGCGTGAGAATTGTTTCTCTCTTGGTTCCTTGTCGAACAAC
258 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGCCGAACTTT
* * * * *
18410811 CGAACTTGTCAACCTTTTGCGATTTCTTTTAGAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
322 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCC
* * * ** * * * *
18410876 ATTCCTTCGAGCAA-TTTTCAAACATTACATGCTCTTGAAATCGTAACATTTGGTCTAAATTGTT
387 ATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTT
* * * * *
18410940 TATCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACGTATTTAAGTGAGAATTGTTTCACT
452 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *** * * *
18411005 CTTGGCT-CTTGGAAAAACTTCCAAACTTGTCAAACTTTTACT-AGTTCTTTCAAAACTTCAGTT
517 CTTGGTTCCTT-GTCGAACTTCCGAACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTCAGTT
* * * * *
18411068 CCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTCTTCGAATAATCCATGCTCAGGAAAT
580 CCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT-TTCGAACATTCCATGCTCGGGAAAT
18411133 C
644 C
* * *
18411134 ACATCTTTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * *** * *
18411199 TTTACGTGAGAATTGTTTCTCTCTTGGTGCTTGTCCAAACTTTTAAACTTTTCAATCTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACGA
** * * *
18411264 GTTCTTTTATATTTTTGGTTTCTTAAAGTTTTCAAGACGATCCATTCCTTCAAGCAATTTTCTGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGA
** * ** * *
18411329 ACATTCCATGCTTTGGAAATCGTATCATTTCATCTAAATAGCTTGTCATTTTATAAACAACTTTT
195 ACATT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* ** * * * *
18411394 AG-CTTTTGAATTAAAAACTTATTTACGTGAGAATCATTTGTCACTTGGTTCTTGTTCGAAATTT
259 GGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-CCGAACTTT
* * *
18411458 CAAACTAGTCAAACTTTTACGAGTTCTTTTATATA-TTCGGTTCCTTAAAGTATTCAAAATGATC
322 CGAACTTGTCAAACTTTTACGAGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
18411522 CATTCCTTCGAA-CAATTTTTCAAACATTCCAGGCTCGGGAAATCACATCTTTTAGTCTAAATAG
386 CATTCCTTC-AAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAG
* * * * * * *
18411586 TTCGTTAGTTTGCAAGCAACTTTTTGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCT
450 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * *
18411651 CTCTTGGTTCCTTGCCGAACTACCGAACTTGTCAAACATTTGTGATTTCTTTTATAACTTCGGTT
515 CTCTTGGTTCCTTGTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * * * * *
18411716 CCTTAAAGAATTCAAGTCGAATTCATTCCTTCGAGCAATTTTCGAACATTCCTTACTCGAGAAAT
580 CCTTAAAGTATTCAAGACG-ATCCATTCCTTCAAGCAATTTTCGAACATTCCATGCTCGGGAAAT
18411781 C
644 C
* * * * *
18411782 ACATCATTTGGTCTAAATGGTTTCTCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
18411847 TTTGCGAGAGAATTGTTTCTCTCATGGTTC-T-T--AA---CCAAACTT-TCGAACTTAT-C-A-
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTCCGAACTTGTCAAACTTTTACGAG
*** * * * * *
18411901 AAATTTTACAACTTTGGATCCTTAAAGTATTTAAGACGATCCATTCCTTCAAACAAATTTTC-GA
131 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC-AATTTTCTGA
* * * * **
18411965 ACATTCCTCGCTCGGGGAATCGCATCATATT-GTCTAAATAGTTTATCATTTTATAAACAACAAT
195 ACATTCAT-GCTCGGGAAATCGCATCAT-TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * ** * *
18412029 TAGTATTTAAATTAAAAAGTTATGTT-CGTCA-ATTTGTAAACAGCT-TTAGG-TCTT--TGAA-
258 TGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAATTGT-TTC-TCTCTT-GGTTCTTGCCGAAC
*** * * **** * * ** *
18412087 TTAAAAACTTGTTTACGTGATAATTATTTTCTCTTG-GTTCCTTGCCGAACTACCGAACTTTTCA
319 TTTCGAACTTG--T-C---A-AA--CTTTT-AC--GAGTT-CTTTTATAACTTCGGTTC-CTT-A
* * ** * ** ** **** ** * *
18412151 AACTTTTGCAATTTCTTTTATAAATTTGGTTCCTTAAATTACTCAAGACGA-TCCATTCCTTCGA
369 AAGTATT-CAA----GATGATCCA-TTCCTTCAAGCAATTTTTCGA-AC-ATTCCA-TGC-TCGA
* * * ** ** * * *
18412215 GCAATTTCTGAACAT-TTTATGCTCGGGAAACCG--CATCATTTCTTCTAAA-TA-GTTT-GTCA
424 G-AA-ATC-G--CATCTTT-TGGTC--TAAATAGTTTGTCA-TT-TTGTAAACAACTTTTGGTC-
* **** * ** * * * *** * *
18412274 TTTCGTAAAT-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TA
478 TTT-G-AATTAAAAACT--TATTT-ACGTGAGAA-TTGTTT-C-T--CTCTTGGTTC-CT-TGTC
** * * * * *** ** * ** *
18412337 GTTCTTAGCCAAACTTCT-GAAC--TT-GGCA-AAATTTTACGAGTTCTA-TTCTAACTTCGATT
531 GAACTT--CCGAACTTGTCAAACTTTTATG-AGTTCTTTTATAACTTC-AGTTC---CTTAAAGT
* * * * * * * * *
18412396 CCTTAAAGTATTCAAAACGATCCATTCCTTCGAGCAATTTTCAAAACATTCCATGCTCCGGAAAT
589 -ATTCAAG-A--C-GATCCATTC----CTTCAAGCAATTTTC-GAACATTCCATGCTCGGGAAAT
18412461 C
644 C
* *
18412462 GCATCATCTT-GTCTAAATAGTTTGTCA-TTTTTAAACAACTTTTGGTCTTTGAATTAAAACCTT
1 GCATCAT-TTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTT
**
18412525 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCTGAACTTTTGAACTTGTCAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
18412590 AGTTCTTTTATAACTTCGGTTACTTAAAGTACTCAAGATGATCCATTCCTTCGAGTAA-TTTCCG
129 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTG
* ** * * * *
18412654 AACATTCCATGCTCGGGAAATCCCATCATTTTCTCTAAATTGTTTTTCATTTTGTAAA-TAGTTT
194 AACATT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
18412718 TGGTCTTTTAATTAAAAACTAATTTACGTTAGAATTGTATCTCTCTTGGTTCTT----AGC-TT-
258 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCCGAACTTTC
* * *
18412777 -AACTT-TCGAAC-TTTACGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGATCCA
323 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* * * *
18412839 ATCCTTCGAGCAATTTCTCGAACATTCCATGCTTCGAGAAATCACATCATTTT-GTCTAAATAGT
388 TTCCTTCAAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCGCATC-TTTTGGTCTAAATAGT
* * ** * * *
18412903 TTGTCATTTTGTAAATAGCTTTTGGTCTTTGAAAGAAAACCTTATTTACATGAGAATTGTTTATC
451 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * * * *
18412968 TCTTGGTT-CTTCGTAGAACTTCCAAACTTGTCAAAATTTTACGAGTTGTTTTATAACTTCGGTA
516 TCTTGGTTCCTT-GTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * * * ** ** * * **
18413032 ACTAAAAGAATTCAA-AGTGATCCAGTCCTTTTATTAATTTCCCGAAAATTCCATGCTTTGGAAA
580 CCTTAAAGTATTCAAGA-CGATCCATTCCTTCAAGCAATTT-TCGAACATTCCATGCTCGGGAAA
*
18413096 AC
643 TC
* * * * *
18413098 ACATCATTAGGTCTAAATAGTTTGTCATTTTTTAAACAAATTTTGGTCTTTGAATTCAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * **
18413163 TTTACGTGAGAATTGTTTCTCTGTTAGCTCTTGTCCGAACTTCCGAACTTTTCAAACTTTTTTGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTACGA
* ** * * * * *
18413228 GTTATTTTATATTTTCGGTTCCTT-CATTTTTCAAGACAATCCATTCCTTCGAGCAATTTT-TCG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCT-G
* * * *
18413291 AAGATTACATGCTCGGGAAATCACATCATTTTGTCTAAATAGTTTGTCA-TTTGATAAATAACTT
194 AACATT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTT
* * * ** *
18413355 TTAGTCTTTCAATTAAAAACTTATTTATGTGAGAATCATTTCTCT-TTCGGTTCTTGTCCAAACT
257 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTG-CCGAACT
* * * *
18413419 TTTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAATTATTCAAGATGAT
320 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * *
18413484 CTATTCCGTCGAA-CAATTTTTTGAACATTCCAGGCACGAGAAATCACATCTTTTGGTCTAAATA
385 CCATTCCTTC-AAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATA
** * * * *
18413548 GTTCATCAATTTCTGAACAACTTTTGCTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
449 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * ** * *
18413613 TCTCTTTGTTCCTTGTCGAACTACTAAACTTGTCAAACTTTTGTGATTTCTTTTATAACTTCAGT
514 TCTCTTGGTTCCTTGTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGT
* ** * *
18413678 TCCTTAAAGTATTCAAGAGGATATATTTCTTCCAGCAATTTTCGAACATTCCATGCTCGGGAAAT
579 TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCGAACATTCCATGCTCGGGAAAT
18413743 C
644 C
* *
18413744 GCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18413809 TTTACATGAGAATTATATCTCTCTTGGTTCTTGGTCGAACTTCCGAAGTTGTCAAAATTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * * *
18413874 GTTATTTTATAACTTTGGTTCCTTACAGTATTCAAGACGACCCATTCATTCGAGTAATTTTTTGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGA
* * * * * * *
18413939 AGATCTCAAGTTCTGGAAATCGTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTC
195 ACAT-TCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
** * * * * * * *
18414004 AATCTTTGAACTAAAAACTTATTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTC
259 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GCCGAACTTTC
** * * * * *
18414069 GAACTTGTCAAACTTTTATTAGTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATCACCCA
323 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* * * * * * * * * * *
18414134 TTCCATCAAGTAATTTTTCGAATACTT-CGTGTTGGGGAAATTGAATCTTTTGGTCTTAGTAGTT
388 TTCCTTCAAGCAATTTTTCGAACA-TTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTT
*
18414198 TGTCATTTTGTAAACAACTTTTGGTCATTT-AATTAAAAATTTATTTACGTGAGAA-T-TTTCTC
452 TGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * * * **
18414260 TCTTGGTT-CTTGTCCAAACTTTCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTCCA-T
516 TCTTGGTTCCTTGT-CGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTT-CAGT
* * * * * *
18414323 TCCTTAAAGTTTTCAAGATGATCCATTCCTTCAAGTAATATTTTGAACATTCCATGATCCGGAAA
579 TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT-TTTCGAACATTCCATGCTCGGGAAA
18414388 TC
643 TC
* ** * * *
18414390 GCATCATTTGGTCTAAATACTTTCCCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
18414455 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAAATTCTCAAAATTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTC-GAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
18414520 GATCTTTTATAATTTCAGTTCCTCAATGTATTCAAGACGATCTATTCCTTCAAACAAATTTTC-G
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC-AATTTTCTG
* * * * *
18414584 AACGTTTCAGGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAATTTT
194 AAC-ATTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
** * * **
18414649 TTCTCTTTGAATTAGAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCCTTGCCGAACTAC
258 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGCCGAACTTT
* *
18414714 CGAACTTGTCAAACTTTTTC-ATTTCCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
322 CGAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * *
18414778 CATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
386 CATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGT
* * * * * *
18414842 TAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTC
451 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * **
18414907 TCCTGGTT-CTTGGTCGAACTTCCGAAGTTGTCAAAATTTT-TCGAGTTATTTTATAACTTTGGT
516 TCTTGGTTCCTT-GTCGAACTTCCGAACTTGTCAAACTTTTAT-GAGTTCTTTTATAACTTCAGT
* * * * * * * * *
18414970 TCCTTAAAGTATTCAAGATGA--CATTCATTCAAGCAATTTTTGCAGATCCCAGGTTTGGGAAAT
579 TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCGAACATTCCATGCTCGGGAAAT
18415033 C
644 C
* * *
18415034 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
18415099 TTTTCGTGAGAATTGTTTCACCCTTGGCTCTTGGACGATCTTTCGAACTTGTCAAACTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * *
18415164 GTTCTTTCATAACTTTGGTTCCTTAAAGAATTCAAGATC-ACCCATTCCATCAAGCAATTTTCTG
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCAAGCAATTTTCTG
* * * * * * * *
18415228 AATAGTTCGTGCTCGGGAAATTGAATCTTTTGGTCTTAGTAATTTGTCATTTTGTAAACAACTTT
194 AACA-TTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* *
18415293 TGGTCATTT-AATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTT
258 TGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-CCGAACTT
* * * ** ** * *
18415357 TCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTCCATTCCTTAAAGTTTTTAAGATGATC
321 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
18415422 CATTCCTTCGAGCAATATTTT-GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAC
386 CATTCCTTCAAGCAAT-TTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAG
* * * *
18415486 TTTCTCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
450 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
18415551 CTCTTGGTTCTTTGCCGAACTTCCGAACTTGTCAAAATTTTATGAGTTCTTTTATAACTCCGGTT
515 CTCTTGGTTCCTTGTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTT
* * * * * **
18415616 CCTAAAAGTATTCAATACGATCTATTTCTTCGAA-CAATTTCCCGAACATTCCATGCTTAGGAAA
580 CCTTAAAGTATTCAAGACGATCCATTCCTTC-AAGCAATTT-TCGAACATTCCATGCTCGGGAAA
18415680 TC
643 TC
* **
18415682 -AAAAACTTTGGTCTAAATAGTTTGTCA-TTTTT-AATCAAC-TTTGTGTCTTTGAATTAAAAAC
1 GCATCA-TTTGGTCTAAATAGTTTGTCATTTTTTAAAT-AACTTTTG-GTCTTTGAATTAAAAAC
* * * * * *
18415743 TTATTTACGTGAGAAATGTTTCTCTGTTAGTTCTTGTCCGAACTGCTGAACTTTTCAAACTTTTA
63 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGT-CGAACTTCCGAACTTGTCAAACTTTTA
* * ** * * * *
18415808 CAAGTTGTTTTATATTTTCGGTTCCTTAAATTTTTCAAGACGATCCATTTCTTCGAGCAATTTT-
127 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTC
* * * * *
18415872 TCGAACATTACATGCTCGAGAAATCGCATCATTTTGTCTAAATAGATTGTCATTTTATAAATAAC
192 T-GAACATT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
** * * * * * *
18415937 TTTCAGTTTTTGAATTAAAAACTTACTTACGTGAGAATTATTTCTATTTTGGTTCTTGTCCAAAC
255 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-CCGAAC
* * * *
18416002 TTTTGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGA
319 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * *
18416067 TCTATTCCTTCGAA-CAATTTTTCGAACATTCCAGGCACGAGAAATCGCATCTTTTGGTCTAAAT
384 TCCATTCCTTC-AAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAAT
* * * *
18416131 AGTTTGTCAATTTGTAAACAACTTTTGCTGTTTGAATTAAAAACTTATTTACGTGATAATTGTTT
448 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * *
18416196 CTCTCTTGGTTCCTTGTCGAACTACTGAACTTGTCAAACTTTTGTGATTTCTTTTATAACTTTAG
513 CTCTCTTGGTTCCTTGTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAG
* * * * * *
18416261 TTCCTTAAAGTATTCAAAACAATCTATTCCTTCCA-CTAATTTCCGAATATTCCATGCTCGGGAA
578 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC-AATTTTCGAACATTCCATGCTCGGGAA
18416325 ATC
642 ATC
* * * * *
18416328 GTATCATTTGGTCTAAATAGTTAGTCATTTTTTAAATAGCTTTTGGTCTTTAAATTAAAAAATTA
1 GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
18416393 TTTACGTGAGAGTTATTTCTCTCCTGGTTCTTGGTCAAACTTCCAAAGTTGTCAAACTTTTACAA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCGAACTTCCGAACTTGTCAAACTTTTACGA
* *
18416458 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTCATTCAAGCAATTTTCTGA
130 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGA
* * * ** * *
18416523 AGATTCAAAGATCAAGAAATCGTATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAACTTTT
195 ACATTC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * **
18416588 GGTATTTGAATTAAAAAATTATTTACATGAGAATTGTTTCACCCTTGGCTCTTGGATGAACTTTC
259 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GCCGAACTTTC
* * * *
18416653 GAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGAATTTAAGATGATCCA
323 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* * * * *
18416718 TTCCATCAAGCAATTTTCCGAACAGTCTATGCTCGAGAAATCGCATCTTTTGGTCTTAATAGTTT
388 TTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTT
* * *
18416783 TTCATTTTGTAAACAACTTTTGGACATTGAATTAA
453 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
18416818 TTCCGAACTT
Statistics
Matches: 4508, Mismatches: 968, Indels: 416
0.77 0.16 0.07
Matches are distributed among these distances:
632 8 0.00
633 3 0.00
634 1 0.00
635 7 0.00
636 201 0.04
637 178 0.04
638 50 0.01
639 9 0.00
640 10 0.00
641 4 0.00
642 2 0.00
643 19 0.00
644 369 0.08
645 370 0.08
646 604 0.13
647 1693 0.38
648 416 0.09
649 24 0.01
651 9 0.00
652 18 0.00
653 10 0.00
654 15 0.00
655 9 0.00
656 16 0.00
657 6 0.00
658 3 0.00
659 8 0.00
660 17 0.00
661 14 0.00
662 17 0.00
663 16 0.00
664 8 0.00
665 5 0.00
666 1 0.00
667 1 0.00
668 16 0.00
669 15 0.00
670 7 0.00
671 18 0.00
672 16 0.00
673 1 0.00
674 3 0.00
675 5 0.00
677 2 0.00
679 75 0.02
680 40 0.01
681 4 0.00
682 1 0.00
684 2 0.00
685 5 0.00
687 7 0.00
688 14 0.00
689 39 0.01
690 54 0.01
691 43 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (644 bp):
GCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAACTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTCCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGAA
CATTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCCGAACTTTCGAA
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTC
CTTCAAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
GTTCCTTGTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAA
AGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCGAACATTCCATGCTCGGGAAATC
Found at i:18416949 original size:177 final size:177
Alignment explanation
Indices: 18416645--18416994 Score: 411
Period size: 177 Copynumber: 2.0 Consensus size: 177
18416635 GCTCTTGGAT
* * **
18416645 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGAATTTAAG
1 GAACTTTCAAAATTGTCAAACTTTTACGAGTTCTTTCATAACTTTCATTCCTTAAAGAATTTAAG
* * * * *
18416710 ATGATCCATTCCATCAAGCAATTTTCCGAACAGTCTATGCTCGAGAAATCGCATCTTTTGGTCTT
66 ATGATCCATTCCATCAAGCAATTTTCCGAACAGTCCATGATCGAGAAATCGCAACATTTGGTCTA
** *
18416775 AATAGTTTTTCATTTTGTAAACAACTTTTGGACATTGAATTAATTCC
131 AATACATTCTCATTTTGTAAACAACTTTTGGACATTGAATTAATTCC
* * * * *
18416822 GAACTTTCAAAATTTTCAATCTTTTACGAGTTCTTTTAT-ATTTTCCATTCCTTAAAG-TTTTCA
1 GAACTTTCAAAATTGTCAAACTTTTACGAGTTCTTTCATAACTTT-CATTCCTTAAAGAATTT-A
* * * *
18416885 AGATGATCCATTCCTTCGAGCAATTGTT-TGAACATTCCATGATCTG-GAAATCGCAACATTTGG
64 AGATGATCCATTCCATCAAGCAATT-TTCCGAACAGTCCATGATC-GAGAAATCGCAACATTTGG
* * * *
18416948 TCTAAATACATTCTCATTTTGTAAATAGCTTTTGGTCTTTGAATTAA
127 TCTAAATACATTCTCATTTTGTAAACAACTTTTGGACATTGAATTAA
18416995 AAACATTTTA
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
176 7 0.05
177 134 0.93
178 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (177 bp):
GAACTTTCAAAATTGTCAAACTTTTACGAGTTCTTTCATAACTTTCATTCCTTAAAGAATTTAAG
ATGATCCATTCCATCAAGCAATTTTCCGAACAGTCCATGATCGAGAAATCGCAACATTTGGTCTA
AATACATTCTCATTTTGTAAACAACTTTTGGACATTGAATTAATTCC
Found at i:18417522 original size:216 final size:214
Alignment explanation
Indices: 18417147--18418482 Score: 1158
Period size: 216 Copynumber: 6.2 Consensus size: 214
18417137 TTTTCTCTTG
* * * ** *
18417147 GTTCTTTTATAACTCTGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAATAATTTTTTGA
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * * * *
18417212 ACATTCCAGGAAT-GAGAAATCGCATC-TTTCAGTCAAAATAGTTCGACAATTTGTAAACAACTT
66 ACATTCCA-TACTCGAGAAATCACATCATTT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
18417275 TTGGCCTTTGAATTCAAAACTTATTTACATGAGAATTTTTTCTCTCTTGTTTCCATGCCGAACTA
129 TTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTT-CTTGCCGAACTA
* *
18417340 CCGAACTTGACAAACTTTTGAGA
193 TCGAACTTGTCAAACTTTT-AGA
* * *
18417363 TTTCTTTTATAACTTTGGGTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGA
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * ** *
18417428 GCATTCCACACTTGAGAAATTACATCATTTTATCTAAATAGTTTGTCATTTTATAAACAACTTTT
66 ACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
18417493 AGTCTTTGAATTAGAAACTTATTTACATGAGAATCATTTCTCTCTTGGTTCTTGTCCAAAC-ATT
131 AGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTG-CCGAACTA-T
*
18417557 CGAACTTGTCAAACTTTTACTA
194 CGAACTTGTCAAACTTTTA-GA
* * * * * * ** * * *
18417579 GTTCTTTAATAATTTTGATTCCATAATGTATTCAAGATGATGAATTCCTTCAAACAATTTTTCAA
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * ** * * ** * * *
18417644 AGATTCCA-AGCTCGGGAAATCGTATCACTTGGTGTAAATAGTTCATAAATTTGTAAACAAATTT
66 ACATTCCATA-CTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * ***
18417708 TAGTCTTTGAATTAAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCCTTGTTAAACTA
130 TAGTCTTTGAATT-AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTT-CTTGCCGAACTA
* *
18417773 TCGAAAC-T-T-----TTGTGGA
193 TCG-AACTTGTCAAACTTTTAGA
* * * * * *
18417789 -TTATTTTATAACTTTGGTTCTTTGAAGTATTTAAGACGATCCAATCCTTCGAGCAATTTCT-GA
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * *
18417852 ACATTCCATGCTCG-GAAAAACGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAATAGCTTT
66 ACATTCCATACTCGAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* ** * *
18417916 TTGAATTTGAATTAAAAACTTATTTACTTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAACT-T
130 TAGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTT-GCCGAACTAT
*
18417980 CCGAACTTGTCCAAA-TTTTAAAA
194 -CGAACTTGT-CAAACTTTT-AGA
** * * * * *
18418003 GTTCTTTTATAACTCCGATTCC-TATAAGTATGCAAGACGATCCATTCCTTCGAGC-AGTATCCT
1 GTTCTTTTATAACTTTGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* * * * ** *
18418066 GAATATTCCATGCTTTG-GAAATCACATCCTTTGCCCTAAATAGTTTGTCATTTTTTAAACAACT
64 GAACATTCCATAC-TCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
18418130 TTCAGTCTTTG-ATATAAAACCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGCC---CG
128 TTTAGTCTTTGAAT-TAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGCCGAAC-
18418191 T-TCGAACATT-TCAAACTTTTACGA
191 TATCGAAC-TTGTCAAACTTTTA-GA
** * * * * *
18418215 GTTCTTTTATATTTTTGGTTCCTTAAAGTTTTAAAGACGATCCATTCCTTTGA-CAAAATTTTGG
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTTCG
* * * * * *
18418279 AACATTACATGCTCGAGAAATCACATCATTTCGTCTAAATAGTTTTTTATTTTATAAACAACTTT
65 AACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
18418344 TAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTATTGTCAGAACTTT
130 TAGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTG-CCGAACTAT
*
18418409 CGAACTTCTCAAACTTTTAAGA
194 CGAACTTGTCAAACTTTT-AGA
*
18418431 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
1 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
18418483 TCAATTTGTA
Statistics
Matches: 897, Mismatches: 179, Indels: 88
0.77 0.15 0.08
Matches are distributed among these distances:
206 7 0.01
207 44 0.05
208 61 0.07
209 45 0.05
210 1 0.00
211 11 0.01
212 152 0.17
213 15 0.02
214 4 0.00
215 59 0.07
216 441 0.49
217 49 0.05
218 8 0.01
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (214 bp):
GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
ACATTCCATACTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
AGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGCCGAACTATCG
AACTTGTCAAACTTTTAGA
Found at i:18417963 original size:424 final size:421
Alignment explanation
Indices: 18417350--18418481 Score: 1142
Period size: 424 Copynumber: 2.7 Consensus size: 421
18417340 CCGAACTTGA
* * * * *
18417350 CAAACTTTTGA-GATTTCTTTTATAACTTTGGGTCCTTAAAGTATTCAAGATGATCCATTCCTTC
1 CAAACTTTT-ACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTC
* ** * * ** *
18417414 GAGCAATTTTTCGAGCATTCCACACTTGAGAAATTA-CATCATTTTATCTAAATAGTTTGTCATT
65 GAGCAA-TTTTCGAACATTCCATGCTCG-GAAA-AACCATCATTTCGTCTAAATAGTTTGTAATT
*
18417478 TTATAAACAACTTTTAGTCTTTGAATTAGAAACTTATTTACATGAGAATCATTTCTCTCTTGGTT
127 TTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGTT
** * * *
18417543 CTTGTCCAAACATTCGAACTTGTCAAACTTTTACTAGTTCTTTAATAATTTTGATTCCATAATGT
192 CTTGTCCAAAC-TTCGAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTCGATTCCATAA-GT
* ** * ** **
18417608 ATTCAAGATGATGAATTCCTTCAAACAAT-TTTTCAAAGATTCCAAGCTCGGGAAATCGTATCAC
255 ATTCAAGACGATCCATTCCTTCAAACAGTATCCT-AAAGATTCCAAGCTCGGGAAATCACATC-C
*** * *
18417672 -TTGGTGTAAATAGTTCATAAATTTGTAAACAAATTTTAGTCTTTGA-ATTAAAAAACTTATTTA
318 TTTGCCCTAAATAGTTCATAAATTTGTAAACAAATTTCAGTCTTTGATA-T-AAAAACTTATTAA
18417735 CATGAGAATTGTTTCACTCTTGGTTCCTT-GTT-AAAC-TAT
381 CATGAGAATTGTTTCACTCTTGGTT-CTTCGTTCAAACATAT
** * * *
18417774 CGAAACTTTTGTG-GATTATTTTATAACTTTGGTTCTTTGAAGTATTTAAGACGATCCAATCCTT
1 C-AAACTTTTACGAG-TTATTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTT
*
18417838 CGAGCAA-TTTCTGAACATTCCATGCTCGGAAAAACGCATCATTTGGTCTAAATAGTTTGTAATT
64 CGAGCAATTTTC-GAACATTCCATGCTCGGAAAAAC-CATCATTTCGTCTAAATAGTTTGTAATT
* * * * ** * **
18417902 TTGTAAATAGCTTTTTGAATTTGAATTAAAAACTTATTTACTTGAGAATTTTTTCTCTCTTGGTT
127 TTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGTT
* * *
18417967 CTTGGCCGAACTTCCGAACTTGTCCAAA-TTTTAAAAGTTCTTTTATAACTCCGATTCCTATAAG
192 CTTGTCCAAACTT-CGAACTTGT-CAAACTTTTAAAAGTTCTTTTATAACTTCGATTCC-ATAAG
* * * * * * **
18418031 TATGCAAGACGATCCATTCCTTCGAGCAGTATCCTGAATATTCCATGCTTTGGAAATCACATCCT
254 TATTCAAGACGATCCATTCCTTCAAACAGTATCCTAAAGATTCCAAGCTCGGGAAATCACATCCT
** * * * * * *
18418096 TTGCCCTAAATAGTTTGTCATTTTTTAAACAACTTTCAGTCTTTGATATAAAACCTTATTAACGT
319 TTGCCCTAAATAGTTCATAAATTTGTAAACAAATTTCAGTCTTTGATATAAAAACTTATTAACAT
* * *
18418161 GAGAATTGTTTCTCTCTTGGTTCTTGCCCGTTCGAACATTT
384 GAGAATTGTTTCACTCTTGGTTCTT---CGTTCAAACATAT
* ** *
18418202 CAAACTTTTACGAGTTCTTTTATATTTTTGGTTCCTTAAAGT-TTTAAAGACGATCCATTCCTTT
1 CAAACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTT-AAGACGATCCATTCCTTC
* * * * *
18418266 GA-CAAAATTTTGGAACATTACATGCTC-GAGAAATCACATCATTTCGTCTAAATAGTTTTTTAT
65 GAGC--AATTTTCGAACATTCCATGCTCGGA-AAAAC-CATCATTTCGTCTAAATAGTTTGTAAT
*
18418329 TTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGT
126 TTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGT
* * * * *
18418394 TATTGT-CAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAA
191 TCTTGTCCA-AAC-TTCGAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTCGATTCCAT-AA
18418458 GTATTCAAGACGATCCATTCCTTC
253 GTATTCAAGACGATCCATTCCTTC
18418482 GTCAATTTGT
Statistics
Matches: 579, Mismatches: 101, Indels: 52
0.79 0.14 0.07
Matches are distributed among these distances:
422 4 0.01
423 45 0.08
424 217 0.37
425 69 0.12
426 7 0.01
427 61 0.11
428 171 0.30
429 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (421 bp):
CAAACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCG
AGCAATTTTCGAACATTCCATGCTCGGAAAAACCATCATTTCGTCTAAATAGTTTGTAATTTTAT
AAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGTTCTTG
TCCAAACTTCGAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTCGATTCCATAAGTATTCAA
GACGATCCATTCCTTCAAACAGTATCCTAAAGATTCCAAGCTCGGGAAATCACATCCTTTGCCCT
AAATAGTTCATAAATTTGTAAACAAATTTCAGTCTTTGATATAAAAACTTATTAACATGAGAATT
GTTTCACTCTTGGTTCTTCGTTCAAACATAT
Found at i:18418647 original size:158 final size:158
Alignment explanation
Indices: 18418333--18418647 Score: 413
Period size: 158 Copynumber: 2.0 Consensus size: 158
18418323 TTTTATTTTA
*
18418333 TAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTATT
1 TAAAAAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTATT
* * * *
18418398 GTCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
66 GCCAGAACTTCCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGATTCCTAAAAGTATT
* **
18418463 CAAGACGATCCATTCCTTCGTCAATTTG
131 CAAGACGATCAATTCCTTCGGAAATTTG
* ** * *
18418491 TAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCT
1 TAAAAAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTT-AT
* *
18418556 TGCCA-AACTTCCGAACTTGTCAAA-TTTTATGAGTTCTTTTATAGA--TCTGATTCCTAAAAGT
65 TGCCAGAACTTCCGAACTTCTCAAACTTTTAAGAGTTCTTTTATA-ACTTC-GATTCCTAAAAGT
* *
18418617 ATTCAAGATGATCAATTCCTTTGAGAAATTT
128 ATTCAAGACGATCAATTCCTTCG-GAAATTT
18418648 CCCAAACATT
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
156 2 0.01
157 49 0.36
158 80 0.59
159 5 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (158 bp):
TAAAAAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTATT
GCCAGAACTTCCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGATTCCTAAAAGTATT
CAAGACGATCAATTCCTTCGGAAATTTG
Done.