Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 6 of 125
Found at i:1780845 original size:18 final size:19
Alignment explanation
Indices: 1780822--1780868 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
1780812 AATAGGTTTG
1780822 TAAATATTTTAAT-ATTTT
1 TAAATATTTTAATAATTTT
* * *
1780840 TAAATAATTGATTAATTTT
1 TAAATATTTTAATAATTTT
*
1780859 TAATTATTTT
1 TAAATATTTT
1780869 TATTTAATTA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TAAATATTTTAATAATTTT
Found at i:1793226 original size:26 final size:26
Alignment explanation
Indices: 1793197--1793247 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1793187 TTGTATTATT
* *
1793197 TTATATTATTTTATTTAATCTCATCA
1 TTATAGTAATTTATTTAATCTCATCA
* *
1793223 TTATAGTAATTTATTTCATGTCATC
1 TTATAGTAATTTATTTAATCTCATC
1793248 GCTATTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.55
Consensus pattern (26 bp):
TTATAGTAATTTATTTAATCTCATCA
Found at i:1793847 original size:17 final size:17
Alignment explanation
Indices: 1793827--1793869 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1793817 TCTATATGTA
*
1793827 AAATATATATATATATT
1 AAATATATATATACATT
* *
1793844 AAATGTATATATGCATT
1 AAATATATATATACATT
*
1793861 AAAAATATA
1 AAATATATA
1793870 AAAATGAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
AAATATATATATACATT
Found at i:1794028 original size:23 final size:22
Alignment explanation
Indices: 1794002--1794060 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
1793992 TTGTTATTAC
1794002 AAAAATTGTAAAAAAAATATTTT
1 AAAAATT-TAAAAAAAATATTTT
* *
1794025 AAAAAGTTT-AAAAATATTTTTT
1 AAAAA-TTTAAAAAAAATATTTT
*
1794047 ATAAAATTTTAAAA
1 A-AAAATTTAAAAA
1794061 TATATAATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 15 0.48
23 14 0.45
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (22 bp):
AAAAATTTAAAAAAAATATTTT
Found at i:1794037 original size:22 final size:23
Alignment explanation
Indices: 1794012--1794060 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
1794002 AAAAATTGTA
1794012 AAAAAAATATTTTA-AAAAGTTT
1 AAAAAAATATTTTATAAAAGTTT
* * *
1794034 AAAAATATTTTTTATAAAATTTT
1 AAAAAAATATTTTATAAAAGTTT
1794057 AAAA
1 AAAA
1794061 TATATAATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AAAAAAATATTTTATAAAAGTTT
Found at i:1794158 original size:18 final size:20
Alignment explanation
Indices: 1794132--1794184 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
1794122 GAAATTCATT
**
1794132 TATATTTTTTAATTTTTATA
1 TATATTTTTTAATTTAAATA
1794152 -ATATTTTTTAATTTAAATA
1 TATATTTTTTAATTTAAATA
1794171 TATATTTTTATAAT
1 TATATTTTT-TAAT
1794185 ATATTTTAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 17 0.59
20 8 0.28
21 4 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATATTTTTTAATTTAAATA
Found at i:1796430 original size:32 final size:31
Alignment explanation
Indices: 1796394--1796478 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 31
1796384 TTATGATAGT
* * *
1796394 AAAAATATAATTTAATATTTTTAT-AATTTTTA
1 AAAAAT-TAAATTAA-AATTTTATCAAATTTTA
1796426 AAAAATTAAATTAAAATTTTATCAAATTTTAA
1 AAAAATTAAATTAAAATTTTATCAAATTTT-A
* *
1796458 AAAAATTAAAATATAATTTTA
1 AAAAATTAAATTAAAATTTTA
1796479 CTATTACTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 7 0.15
31 13 0.28
32 26 0.57
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (31 bp):
AAAAATTAAATTAAAATTTTATCAAATTTTA
Found at i:1797129 original size:30 final size:31
Alignment explanation
Indices: 1797095--1797168 Score: 78
Period size: 36 Copynumber: 2.3 Consensus size: 31
1797085 GATGCTCCAT
*
1797095 CTTCCCC-ACTCACAACCCAATCCTCCGCCC
1 CTTCCCCTACTCACAACCCAATCCCCCGCCC
*
1797125 CTTCCCCCGCCTTTCTCACAACCCAATCCCCCGCCC
1 CTT---CC-CC-TACTCACAACCCAATCCCCCGCCC
1797161 CTTCCCCT
1 CTTCCCCT
1797169 GCCCCTCCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
30 3 0.08
31 1 0.03
32 2 0.06
33 4 0.11
34 2 0.06
36 24 0.67
ACGTcount: A:0.15, C:0.61, G:0.04, T:0.20
Consensus pattern (31 bp):
CTTCCCCTACTCACAACCCAATCCCCCGCCC
Found at i:1805384 original size:21 final size:21
Alignment explanation
Indices: 1805359--1805402 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1805349 AAGACTAAAT
1805359 TAAAA-TAAAAATTTAAGTTCA
1 TAAAATTAAAAATTTAA-TTCA
* *
1805380 TAAAATTATAGATTTAATTCA
1 TAAAATTAAAAATTTAATTCA
1805401 TA
1 TA
1805403 TTTTTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (21 bp):
TAAAATTAAAAATTTAATTCA
Found at i:1818684 original size:19 final size:19
Alignment explanation
Indices: 1818662--1818700 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
1818652 ATGTTAAAGT
*
1818662 TGGTGATATATATTAATCA
1 TGGTGATACATATTAATCA
*
1818681 TGGTGATACGTATTAATCA
1 TGGTGATACATATTAATCA
1818700 T
1 T
1818701 ATTGCTACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (19 bp):
TGGTGATACATATTAATCA
Found at i:1826166 original size:82 final size:82
Alignment explanation
Indices: 1826073--1826241 Score: 184
Period size: 82 Copynumber: 2.1 Consensus size: 82
1826063 GCCAACCCCT
* *
1826073 AAAATAAAAAAAAATCATTTAAATCATTTAAAAT-TTTTAAAATTTTA-TATTAATAA-AAGTAA
1 AAAATAAAAAAAAATCATTT-AATC-TTTAAAATGTTATAAAATTATACTATTAA-AATAA-TAA
* *
1826135 AATTACATTTTT-TTCTTCTA
62 AATTACATTTTTATTATTATA
* * * * *
1826155 AAAATATAAAAAATTGATTTAATCTTTTAAATGTTATAAAGTTATACTATTAAAATAATAAAATT
1 AAAATAAAAAAAAATCATTTAATCTTTAAAATGTTATAAAATTATACTATTAAAATAATAAAATT
*
1826220 ATATTTTTATTATTATA
66 ACATTTTTATTATTATA
1826237 AAAAT
1 AAAAT
1826242 TACAATCTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
80 7 0.10
81 30 0.41
82 36 0.49
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (82 bp):
AAAATAAAAAAAAATCATTTAATCTTTAAAATGTTATAAAATTATACTATTAAAATAATAAAATT
ACATTTTTATTATTATA
Found at i:1828369 original size:15 final size:16
Alignment explanation
Indices: 1828339--1828385 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
1828329 TAATAAAAAT
1828339 TAAATATTATTATTTTAA
1 TAAAT-TTATT-TTTTAA
1828357 T-AATTTATTTTTT-A
1 TAAATTTATTTTTTAA
*
1828371 TAAATTAATTTTTTA
1 TAAATTTATTTTTTA
1828386 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 2 0.08
15 15 0.58
16 5 0.19
17 3 0.12
18 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TAAATTTATTTTTTAA
Found at i:1828378 original size:22 final size:22
Alignment explanation
Indices: 1828353--1828396 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1828343 TATTATTATT
1828353 TTAATAATTTAT-TTTTTATAAA
1 TTAATAATTTATATTTTT-TAAA
**
1828375 TTAATTTTTTATATTTTTTAAA
1 TTAATAATTTATATTTTTTAAA
1828397 GAGTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTAATAATTTATATTTTTTAAA
Found at i:1828742 original size:16 final size:15
Alignment explanation
Indices: 1828716--1828751 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
1828706 AAATATTTAA
1828716 TATTTTTAAAAAGTT
1 TATTTTTAAAAAGTT
*
1828731 TATTTGTTAAAAATTT
1 TATTT-TTAAAAAGTT
1828747 TATTT
1 TATTT
1828752 ATTTTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
TATTTTTAAAAAGTT
Found at i:1844459 original size:22 final size:22
Alignment explanation
Indices: 1844434--1844490 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
1844424 GAAAAATTGT
*
1844434 AGTAAAACAATAACATAACAAC
1 AGTAAAACAACAACATAACAAC
* *
1844456 AGTAAAATAGCAACATAACAAC
1 AGTAAAACAACAACATAACAAC
**
1844478 AACAAAACAACAA
1 AGTAAAACAACAA
1844491 GGAAAAAAGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.65, C:0.19, G:0.05, T:0.11
Consensus pattern (22 bp):
AGTAAAACAACAACATAACAAC
Found at i:1855110 original size:2 final size:2
Alignment explanation
Indices: 1855105--1855179 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
1855095 AAATATTAGT
1855105 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1855147 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1855180 TATTAATTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1856491 original size:21 final size:21
Alignment explanation
Indices: 1856444--1856492 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
1856434 TCATATTAAT
1856444 AATAAAA-TAATATGGAATGAA
1 AATAAAATTAATAT-GAATGAA
1856465 AA-AAAATTAATAT-AATGAA
1 AATAAAATTAATATGAATGAA
1856484 CAATAAAAT
1 -AATAAAAT
1856493 ATGTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.24
20 6 0.24
21 13 0.52
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.24
Consensus pattern (21 bp):
AATAAAATTAATATGAATGAA
Found at i:1856578 original size:28 final size:27
Alignment explanation
Indices: 1856516--1856579 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
1856506 AAAATTAGCA
1856516 ATATAA-TAAATAATATTGATTATTTC
1 ATATAATTAAATAATATTGATTATTTC
* **
1856542 A-ATTCATTAAATAATATATTTTTATTTC
1 ATA-TAATTAAATAATAT-TGATTATTTC
1856570 ATATAATTAA
1 ATATAATTAA
1856580 TGTAAAGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
25 1 0.03
26 3 0.10
27 10 0.33
28 15 0.50
29 1 0.03
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (27 bp):
ATATAATTAAATAATATTGATTATTTC
Found at i:1858670 original size:25 final size:25
Alignment explanation
Indices: 1858641--1858702 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
1858631 CAAATCAAGC
1858641 CTTCTGTTAAAAATTCTATCTATTT
1 CTTCTGTTAAAAATTCTATCTATTT
* *
1858666 TTTCTGTTAAAATTTCTATCTATTT
1 CTTCTGTTAAAAATTCTATCTATTT
*
1858691 CTACTGTTAAAA
1 CTTCTGTTAAAA
1858703 GTCGATCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.52
Consensus pattern (25 bp):
CTTCTGTTAAAAATTCTATCTATTT
Found at i:1860745 original size:10 final size:10
Alignment explanation
Indices: 1860730--1860759 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
1860720 AAATTTGGAG
1860730 GATTGGATTT
1 GATTGGATTT
1860740 GATTGGATTT
1 GATTGGATTT
1860750 GATTGGATTT
1 GATTGGATTT
1860760 AAGAGAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (10 bp):
GATTGGATTT
Found at i:1865077 original size:22 final size:21
Alignment explanation
Indices: 1865038--1865079 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1865028 TGATTCTGTT
*
1865038 TTTTTTTATCTAATATTTTCC
1 TTTTTTTATCTAAGATTTTCC
*
1865059 TTTTTTTATTTCAAGATTTTC
1 TTTTTTTATCT-AAGATTTTC
1865080 AGATTCACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTTATCTAAGATTTTCC
Found at i:1869671 original size:18 final size:18
Alignment explanation
Indices: 1869641--1869684 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
1869631 ATGTCATATC
*
1869641 AATAAATAA-ATTAATAAT
1 AATAAA-AATATTAAAAAT
*
1869659 TATAAAAATATTAAAAAT
1 AATAAAAATATTAAAAAT
1869677 AATAAAAA
1 AATAAAAA
1869685 AAGTCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AATAAAAATATTAAAAAT
Found at i:1870108 original size:164 final size:164
Alignment explanation
Indices: 1869837--1870153 Score: 501
Period size: 164 Copynumber: 1.9 Consensus size: 164
1869827 GAAGTTCTCG
* *
1869837 TGGGTTGTGTCAAGCCCATGCAAGGTATCTAGATCAATTTGCTAAGCTCGAGTCTGGCACAACCC
1 TGGGTTGTGTCAAGCCCATGCAAGGTATCTAGATAAATTTGCTAAGCTCGAGTCTGACACAACCC
** * * * * *
1869902 AAAAAATGGGCTTATTTTTTGCCCAAGCTTGATCCAAATTAAGAAA-AGTAATCTTGGGCCAGGC
66 AAAAAATGAACTTATTTTTTACCCAAACCTAATCCAAATTAAGAAAGA-TAATCTTGGACCAGGC
1869966 TCGACCTACTTATATTTGATTTTTAGAGGATCCCA
130 TCGACCTACTTATATTTGATTTTTAGAGGATCCCA
* * *
1870001 TGGGTTGTGTCAAGCTCATGCATGGTATCTAGATAAATTTTCTAAGCTCGAGTCTGACACAACCC
1 TGGGTTGTGTCAAGCCCATGCAAGGTATCTAGATAAATTTGCTAAGCTCGAGTCTGACACAACCC
*
1870066 AAAAAATGAACTTATTTTTTACCCAAACCTAATCCAAATTAAGAAAGATAATCTTGGACTAGGCT
66 AAAAAATGAACTTATTTTTTACCCAAACCTAATCCAAATTAAGAAAGATAATCTTGGACCAGGCT
1870131 CGACCTACTTATATTTGATTTTT
131 CGACCTACTTATATTTGATTTTT
1870154 TAGACTAGTT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
164 138 0.99
165 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (164 bp):
TGGGTTGTGTCAAGCCCATGCAAGGTATCTAGATAAATTTGCTAAGCTCGAGTCTGACACAACCC
AAAAAATGAACTTATTTTTTACCCAAACCTAATCCAAATTAAGAAAGATAATCTTGGACCAGGCT
CGACCTACTTATATTTGATTTTTAGAGGATCCCA
Found at i:1871677 original size:20 final size:18
Alignment explanation
Indices: 1871652--1871700 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
1871642 ATTACAAAAT
*
1871652 AATTTAAAATAATTTTCAA
1 AATTTAAAATAAATTT-AA
1871671 AAGTTTAAAATTAAATTTAA
1 AA-TTTAAAA-TAAATTTAA
1871691 AATTTAAAAT
1 AATTTAAAAT
1871701 TATAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 11 0.41
21 6 0.22
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (18 bp):
AATTTAAAATAAATTTAA
Found at i:1871698 original size:19 final size:20
Alignment explanation
Indices: 1871652--1871702 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1871642 ATTACAAAAT
*
1871652 AATTTAAAA-TAATTTTCAA
1 AATTTAAAATTAAATTTCAA
1871671 AAGTTTAAAATTAAATTT-AA
1 AA-TTTAAAATTAAATTTCAA
1871691 AATTTAAAATTA
1 AATTTAAAATTA
1871703 TAAAAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.41
20 11 0.38
21 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTTAAAATTAAATTTCAA
Found at i:1871710 original size:9 final size:10
Alignment explanation
Indices: 1871696--1871738 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
1871686 TTTAAAATTT
1871696 AAAATTAT-A
1 AAAATTATAA
*
1871705 AAAATTTTAA
1 AAAATTATAA
*
1871715 AAAATTCTAA
1 AAAATTATAA
1871725 AAAATATATAA
1 AAAAT-TATAA
1871736 AAA
1 AAA
1871739 GTTAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 7 0.24
10 15 0.52
11 7 0.24
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (10 bp):
AAAATTATAA
Found at i:1871737 original size:19 final size:19
Alignment explanation
Indices: 1871695--1871737 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
1871685 ATTTAAAATT
* *
1871695 TAAAATTATAAAAATTTTA
1 TAAAATTATAAAAAATATA
* *
1871714 AAAAATTCTAAAAAATATA
1 TAAAATTATAAAAAATATA
1871733 TAAAA
1 TAAAA
1871738 AGTTAATTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAATTATAAAAAATATA
Found at i:1874860 original size:30 final size:30
Alignment explanation
Indices: 1874824--1874893 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
1874814 GCTGTGGGGT
1874824 CTTATTTGATTTTTTTGGGTTCATATTGGA
1 CTTATTTGATTTTTTTGGGTTCATATTGGA
*
1874854 CTTATTTGATTTTTTTGGGTTCATGTTGGA
1 CTTATTTGATTTTTTTGGGTTCATATTGGA
*
1874884 TTTATTTGAT
1 CTTATTTGAT
1874894 ATCATGTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.06, G:0.20, T:0.59
Consensus pattern (30 bp):
CTTATTTGATTTTTTTGGGTTCATATTGGA
Found at i:1878070 original size:16 final size:17
Alignment explanation
Indices: 1878038--1878076 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
1878028 GTCCTCTTTC
*
1878038 TAGTTAATGCTTTTCTT
1 TAGTTGATGCTTTTCTT
1878055 TAGTTGATGC-TTTCTT
1 TAGTTGATGCTTTTCTT
*
1878071 AAGTTG
1 TAGTTG
1878077 TGGCCAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.18, C:0.10, G:0.18, T:0.54
Consensus pattern (17 bp):
TAGTTGATGCTTTTCTT
Found at i:1887174 original size:20 final size:20
Alignment explanation
Indices: 1887146--1887184 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1887136 TATCTATATA
1887146 CATACACATACATGTACGTC
1 CATACACATACATGTACGTC
* *
1887166 CATATACATACGTGTACGT
1 CATACACATACATGTACGT
1887185 ACATGTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (20 bp):
CATACACATACATGTACGTC
Found at i:1887370 original size:3 final size:3
Alignment explanation
Indices: 1887364--1887398 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1887354 ATTATTATTA
1887364 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1887399 ATTAGATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:1888369 original size:60 final size:60
Alignment explanation
Indices: 1888272--1888456 Score: 235
Period size: 60 Copynumber: 3.0 Consensus size: 60
1888262 AAATCAATTG
** **
1888272 AATCAATAAATTGCAGAAAAAAAAAATTTAATCAAACAAGAACACCTATATTACTCGATTT
1 AATCAATAAATT-TTGAAAAAAAAAACATAATCAAACAAGAACACCTATATTACTCGATTT
* * * *
1888333 AATCAATAAATTTTGAAAAAAAAAACATAATCAAACAAGAACACCCATATCACTCAATTC
1 AATCAATAAATTTTGAAAAAAAAAACATAATCAAACAAGAACACCTATATTACTCGATTT
* ** *
1888393 AATCAATAAATTTTGAAAAAAAAAAACATAATCAAATAAGAATGCTTATATTACTCGGATTT
1 AATCAATAAATTTTG-AAAAAAAAAACATAATCAAACAAGAACACCTATATTACTC-GATTT
1888455 AA
1 AA
1888457 GTGTGAAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
60 55 0.52
61 46 0.43
62 5 0.05
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.26
Consensus pattern (60 bp):
AATCAATAAATTTTGAAAAAAAAAACATAATCAAACAAGAACACCTATATTACTCGATTT
Found at i:1899164 original size:29 final size:30
Alignment explanation
Indices: 1899132--1899214 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 30
1899122 ATTTAATGTA
1899132 CAATTGTATACATGAACTTTAATT-TGGTG
1 CAATTGTATACATGAACTTTAATTGTGGTG
* * * * *
1899161 CAATTATACACGTGAAACTTTGATTGTGGTT
1 CAATTGTATACATG-AACTTTAATTGTGGTG
* * *
1899192 CAAATGTATACTTGAAATTTAAT
1 CAATTGTATACATGAACTTTAAT
1899215 CATACACATT
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
29 11 0.27
30 16 0.39
31 14 0.34
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.40
Consensus pattern (30 bp):
CAATTGTATACATGAACTTTAATTGTGGTG
Found at i:1899497 original size:26 final size:26
Alignment explanation
Indices: 1899448--1899508 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
1899438 TTATCCCTAA
1899448 AATATATA-TTTAAAATAATAAAAAT
1 AATATATATTTTAAAATAATAAAAAT
* *
1899473 AATATATATTTTTAAATAATTAAAAT
1 AATATATATTTTAAAATAATAAAAAT
* *
1899499 ATTAAATATT
1 AATATATATT
1899509 AAATCAATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 8 0.26
26 23 0.74
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
AATATATATTTTAAAATAATAAAAAT
Found at i:1901695 original size:22 final size:22
Alignment explanation
Indices: 1901665--1901709 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1901655 GATTTCAATG
* * *
1901665 TTCAGTTTGGTACCTGAGTTTT
1 TTCAATTTGATACCTAAGTTTT
*
1901687 TTCAATTTGATACTTAAGTTTT
1 TTCAATTTGATACCTAAGTTTT
1901709 T
1 T
1901710 CTCTGTCACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.11, G:0.16, T:0.53
Consensus pattern (22 bp):
TTCAATTTGATACCTAAGTTTT
Found at i:1903147 original size:5 final size:5
Alignment explanation
Indices: 1903137--1903168 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
1903127 AAAAAACCGG
1903137 TATAA TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TATAA TA
1903169 ATAAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:1903968 original size:102 final size:102
Alignment explanation
Indices: 1903787--1903990 Score: 381
Period size: 102 Copynumber: 2.0 Consensus size: 102
1903777 CAATCAAATT
*
1903787 AATTTATTTGTGGAAATTATTATTATATGATAGCAGGAAAGTCAAAGTCAAACAAAAGCCTGGTT
1 AATTAATTTGTGGAAATTATTATTATATGATAGCAGGAAAGTCAAAGTCAAACAAAAGCCTGGTT
*
1903852 TATGAATGTCGTGTTTGACGGAGTAAAGACCAAGAAA
66 TATGAATATCGTGTTTGACGGAGTAAAGACCAAGAAA
*
1903889 AATTAATTTGTGGAAATTATTATTATATGATAGTAGGAAAGTCAAAGTCAAACAAAAGCCTGGTT
1 AATTAATTTGTGGAAATTATTATTATATGATAGCAGGAAAGTCAAAGTCAAACAAAAGCCTGGTT
1903954 TATGAATATCGTGTTTGACGGAGTAAAGACCAAGAAA
66 TATGAATATCGTGTTTGACGGAGTAAAGACCAAGAAA
1903991 TGACTATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (102 bp):
AATTAATTTGTGGAAATTATTATTATATGATAGCAGGAAAGTCAAAGTCAAACAAAAGCCTGGTT
TATGAATATCGTGTTTGACGGAGTAAAGACCAAGAAA
Found at i:1910794 original size:30 final size:29
Alignment explanation
Indices: 1910729--1910794 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
1910719 ATAATATATT
* *
1910729 ATATAATTTATAATGCATAAAAATTAAGTT
1 ATATAATTTATAATG-ATAAAAATTAACTG
*
1910759 ATATAATGTTATAATG-TAAAAGTTAACTG
1 ATATAAT-TTATAATGATAAAAATTAACTG
1910788 ATTATAA
1 A-TATAA
1910795 ATATAACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 11 0.35
30 12 0.39
31 8 0.26
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (29 bp):
ATATAATTTATAATGATAAAAATTAACTG
Found at i:1920350 original size:20 final size:21
Alignment explanation
Indices: 1920316--1920355 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1920306 AAATTTAATC
*
1920316 CAAAAAATTACAAGAAATGAA
1 CAAAAAATTAAAAGAAATGAA
1920337 CAAAAAA-TAAAAGAAATGA
1 CAAAAAATTAAAAGAAATGA
1920356 GAGAATTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.12
Consensus pattern (21 bp):
CAAAAAATTAAAAGAAATGAA
Found at i:1923577 original size:21 final size:22
Alignment explanation
Indices: 1923553--1923606 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
1923543 GAAGTATGGG
1923553 TTGTATCGGTAGT-AC-CCATAC
1 TTGTATCGGTAGTAACTCC-TAC
1923574 TTGTATCGGTA-TAACTCCTAC
1 TTGTATCGGTAGTAACTCCTAC
*
1923595 TTCTATCGGTAG
1 TTGTATCGGTAG
1923607 GAATCTGCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.03
21 26 0.90
22 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (22 bp):
TTGTATCGGTAGTAACTCCTAC
Found at i:1924394 original size:23 final size:21
Alignment explanation
Indices: 1924359--1924403 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
1924349 ACACTTAATA
1924359 ATTAAATATATTATATTGTTTT
1 ATTAAATATATTATATT-TTTT
*
1924381 ATTAATATTTATTATATTTTTT
1 ATTAA-ATATATTATATTTTTT
1924403 A
1 A
1924404 GTGTTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTAAATATATTATATTTTTT
Found at i:1933970 original size:36 final size:36
Alignment explanation
Indices: 1933923--1933995 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
1933913 ACTGCCGCCG
1933923 CCTGCTTGCTTCTATTCGATCTAGATGGAATGGCAT
1 CCTGCTTGCTTCTATTCGATCTAGATGGAATGGCAT
*
1933959 CCTGCTTGCTTCTATTCGATCTAGGTGGAATGGCAT
1 CCTGCTTGCTTCTATTCGATCTAGATGGAATGGCAT
1933995 C
1 C
1933996 GTGACAAGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (36 bp):
CCTGCTTGCTTCTATTCGATCTAGATGGAATGGCAT
Found at i:1934620 original size:21 final size:21
Alignment explanation
Indices: 1934596--1934637 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1934586 GTACATAATT
*
1934596 TATATGAATAGGGGTGTTCAA
1 TATATGAATAGGGGTATTCAA
*
1934617 TATATTAATAGGGGTATTCAA
1 TATATGAATAGGGGTATTCAA
1934638 ACGGTTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (21 bp):
TATATGAATAGGGGTATTCAA
Found at i:1935104 original size:27 final size:27
Alignment explanation
Indices: 1935074--1935129 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
1935064 CTTTATCTAT
* *
1935074 TAAATCAAATTAATTCAATTAAATTTA
1 TAAATCAAAATAATTAAATTAAATTTA
1935101 TAAATCAAAATAATTAAATTAAATTTA
1 TAAATCAAAATAATTAAATTAAATTTA
1935128 TA
1 TA
1935130 GAATGGGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAATCAAAATAATTAAATTAAATTTA
Found at i:1935118 original size:14 final size:14
Alignment explanation
Indices: 1935072--1935125 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
1935062 CACTTTATCT
1935072 ATTAAATCAAATTA
1 ATTAAATCAAATTA
* * *
1935086 ATTCAATTAAATTT
1 ATTAAATCAAATTA
*
1935100 A-TAAATCAAAATA
1 ATTAAATCAAATTA
*
1935113 ATTAAATTAAATT
1 ATTAAATCAAATT
1935126 TATAGAATGG
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
13 9 0.30
14 21 0.70
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTAAATCAAATTA
Found at i:1943400 original size:17 final size:17
Alignment explanation
Indices: 1943364--1943407 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1943354 ATTTTTTTTA
*
1943364 AAATTTAAACTTAATAT
1 AAATTTAAATTTAATAT
1943381 AAATTTAAATTTAA-ATT
1 AAATTTAAATTTAATA-T
*
1943398 AAAATTAAAT
1 AAATTTAAAT
1943408 GTCCAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTTAAATTTAATAT
Found at i:1944273 original size:23 final size:22
Alignment explanation
Indices: 1944222--1944273 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
1944212 AGGACAGATT
* *
1944222 TTAAAAAAAGAGGATAAAGGGT
1 TTAAAAAAAGAGAATAAAGGGC
* *
1944244 TTTAAAAAAGAGAATCAAGTGGC
1 TTAAAAAAAGAGAATAAAG-GGC
1944267 TTAAAAA
1 TTAAAAA
1944274 GAAGTTAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.21
Consensus pattern (22 bp):
TTAAAAAAAGAGAATAAAGGGC
Found at i:1945186 original size:59 final size:59
Alignment explanation
Indices: 1945109--1945486 Score: 444
Period size: 59 Copynumber: 6.4 Consensus size: 59
1945099 CTTGAACTGT
*
1945109 CCAAAAATTA-CATTTTACCCCCGAACTTTCCAAAATTTCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * **
1945167 CTAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCTAATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
1945226 CCAAAAATTACCATTTTACCCCTGATCTTTCTAAAATCCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
1945285 CCAAAAACTACCGTTTTACCCCCAAACTTTCCAAAATTCCA-TTTTGACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
1945343 CCAAAAATTACCATTTTATCCCCTAACTTTCTAAAA--CCTTATTTTTAGCCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCC--ATTTTTAACCCCGATTTCA
* * * * **
1945402 CCAAAAATTATCGTTTTACCCCCGAACTTTCCAAAATTTCATTTTTGACCCTAACTTT-A
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCA
1945461 CCAAAAATTA-CATTTTTACCCCCGAA
1 CCAAAAATTACCA-TTTTACCCCCGAA
1945487 AGTCAAAAAT
Statistics
Matches: 269, Mismatches: 43, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
56 2 0.01
58 57 0.21
59 206 0.77
60 3 0.01
61 1 0.00
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:1945327 original size:118 final size:117
Alignment explanation
Indices: 1945109--1945482 Score: 495
Period size: 117 Copynumber: 3.2 Consensus size: 117
1945099 CTTGAACTGT
* * ** * *
1945109 CCAAAAATTACATTTTACCCCCGAACTTTCCAAAATTTCATTTTTAACCCCGATTTCACTAAAAA
1 CCAAAAATTACATTTTACCCCTGAACTTTCTAAAATCCCATTTTTAACCTCGATTTCACCAAAAA
* * * *
1945174 TTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCTAATTTCA
66 TTACCGTTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCCTAATTTCA
*
1945226 CCAAAAATTACCATTTTACCCCTGATCTTTCTAAAATCCCATTTTTAACCTCGATTTCACCAAAA
1 CCAAAAATTA-CATTTTACCCCTGAACTTTCTAAAATCCCATTTTTAACCTCGATTTCACCAAAA
* * **
1945291 ACTACCGTTTTACCCCCAAACTTTCCAAAATTCCA-TTTTGACCCCGATTTCA
65 ATTACCGTTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCCTAATTTCA
* *
1945343 CCAAAAATTACCATTTTATCCCCT-AACTTTCTAAAA-CCTTATTTTTAGCCTCGATTTCACCAA
1 CCAAAAATTA-CATTTTA-CCCCTGAACTTTCTAAAATCC-CATTTTTAACCTCGATTTCACCAA
* *
1945406 AAATTATCGTTTTACCCCCGAACTTTCCAAAATTTCATTTTTGACCCTAACTTT-A
63 AAATTACCGTTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCCTAA-TTTCA
1945461 CCAAAAATTACATTTTTACCCC
1 CCAAAAATTACA-TTTTACCCC
1945483 CGAAAGTCAA
Statistics
Matches: 227, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
116 2 0.01
117 114 0.50
118 108 0.48
119 3 0.01
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35
Consensus pattern (117 bp):
CCAAAAATTACATTTTACCCCTGAACTTTCTAAAATCCCATTTTTAACCTCGATTTCACCAAAAA
TTACCGTTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCCTAATTTCA
Found at i:1948933 original size:24 final size:24
Alignment explanation
Indices: 1948906--1948953 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1948896 AGAAATTTCA
*
1948906 ATTCT-TTTTTTTTTAAAGAATTTT
1 ATTCTATTTTGTTTTAAA-AATTTT
*
1948930 ATTCTATTTTGTTTTGAAAATTTT
1 ATTCTATTTTGTTTTAAAAATTTT
1948954 GGGTGGAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (24 bp):
ATTCTATTTTGTTTTAAAAATTTT
Found at i:1951535 original size:29 final size:29
Alignment explanation
Indices: 1951493--1951550 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
1951483 GCAACCCATT
*
1951493 TTTATTATCATATCGAAACGCTATTCCTA
1 TTTATTATCATATCAAAACGCTATTCCTA
1951522 TTTATTATCATATCAAAACGCTATTCCTA
1 TTTATTATCATATCAAAACGCTATTCCTA
1951551 ATAGAATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (29 bp):
TTTATTATCATATCAAAACGCTATTCCTA
Found at i:1953954 original size:14 final size:14
Alignment explanation
Indices: 1953935--1953963 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1953925 ACAGATGGAT
1953935 TCGTATAATTCTTA
1 TCGTATAATTCTTA
1953949 TCGTATAATTCTTA
1 TCGTATAATTCTTA
1953963 T
1 T
1953964 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:1958136 original size:24 final size:21
Alignment explanation
Indices: 1958108--1958175 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
1958098 ACAAAAAAGA
1958108 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCTAAGTCACTTC---TCTT
* *
1958132 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCTAAGTCACTTCTCTT
*
1958153 TTTGTCTAACTCACTTC-CTT
1 TTTGTCTAAGTCACTTCTCTT
1958173 TTT
1 TTT
1958176 TCTTTGTGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
20 6 0.15
21 18 0.46
24 15 0.38
ACGTcount: A:0.13, C:0.24, G:0.09, T:0.54
Consensus pattern (21 bp):
TTTGTCTAAGTCACTTCTCTT
Found at i:1959890 original size:24 final size:25
Alignment explanation
Indices: 1959863--1959911 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
1959853 ATTTAATATA
* *
1959863 AATATAAATATATAAT-TATTATTT
1 AATATAAATAAATAATATAATATTT
*
1959887 AATATATATAAATAATATAATATTT
1 AATATAAATAAATAATATAATATTT
1959912 TTAATAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AATATAAATAAATAATATAATATTT
Found at i:1959907 original size:18 final size:19
Alignment explanation
Indices: 1959856--1959909 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
1959846 GTTAGTAATT
1959856 TAATATAAATATAA-ATATA
1 TAATAT-AATATAATATATA
* *
1959875 TAATTATTATTTAATATATA
1 TAA-TATAATATAATATATA
1959895 TAA-ATAATATAATAT
1 TAATATAATATAATAT
1959910 TTTTAATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 10 0.34
19 8 0.28
20 11 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATATAATATAATATATA
Found at i:1961397 original size:28 final size:30
Alignment explanation
Indices: 1961352--1961409 Score: 93
Period size: 28 Copynumber: 2.0 Consensus size: 30
1961342 ATATACCACA
*
1961352 TCAACAAATAATTTAAAAATTATAAAATAT
1 TCAACAAATAATTCAAAAATTATAAAATAT
1961382 TCAA-AAA-AATTCAAAAATTATAAAATAT
1 TCAACAAATAATTCAAAAATTATAAAATAT
1961410 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 20 0.74
29 3 0.11
30 4 0.15
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (30 bp):
TCAACAAATAATTCAAAAATTATAAAATAT
Found at i:1966418 original size:17 final size:17
Alignment explanation
Indices: 1966398--1966430 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1966388 TTCGAGTTTA
1966398 GAAAAAA-AATTTATTTT
1 GAAAAAAGAA-TTATTTT
1966415 GAAAAAAGAATTATTT
1 GAAAAAAGAATTATTT
1966431 AGATTAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
GAAAAAAGAATTATTTT
Found at i:1967387 original size:14 final size:15
Alignment explanation
Indices: 1967360--1967388 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1967350 AATTCATATG
1967360 AAAATTTTGTAGAGA
1 AAAATTTTGTAGAGA
1967375 AAAATTTTG-AGAGA
1 AAAATTTTGTAGAGA
1967389 GAAAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (15 bp):
AAAATTTTGTAGAGA
Found at i:1970756 original size:20 final size:20
Alignment explanation
Indices: 1970727--1970773 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
1970717 ATATACTTGG
1970727 ATTAATTTATATTTTAGC-TTA
1 ATTAA-TTATATTTTA-CTTTA
*
1970748 ATTAATTATGTTTTACTTTA
1 ATTAATTATATTTTACTTTA
1970768 ATTAAT
1 ATTAAT
1970774 CGAAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 18 0.75
21 5 0.21
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTAATTATATTTTACTTTA
Found at i:1974947 original size:19 final size:21
Alignment explanation
Indices: 1974912--1974950 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
1974902 GTGACAGACC
1974912 TATAATATATATTATTTTAAA
1 TATAATATATATTATTTTAAA
1974933 TATAATA-AT-TTATTTTAA
1 TATAATATATATTATTTTAA
1974951 TTATTTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TATAATATATATTATTTTAAA
Found at i:1975197 original size:22 final size:22
Alignment explanation
Indices: 1975169--1975212 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1975159 TAGTAGTTCG
1975169 ATTTTTAGGGATTTATAGATAA
1 ATTTTTAGGGATTTATAGATAA
1975191 ATTTTTAGGGATTTATAGATAA
1 ATTTTTAGGGATTTATAGATAA
1975213 TATATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (22 bp):
ATTTTTAGGGATTTATAGATAA
Found at i:1976511 original size:13 final size:13
Alignment explanation
Indices: 1976472--1976512 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
1976462 TTGCAGCGAT
*
1976472 TGATTTGATTAAT
1 TGATTTGATTAAC
*
1976485 TGATTTGATCAAC
1 TGATTTGATTAAC
*
1976498 TGATTTTATTAAC
1 TGATTTGATTAAC
1976511 TG
1 TG
1976513 TTTTATTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (13 bp):
TGATTTGATTAAC
Found at i:1976522 original size:13 final size:13
Alignment explanation
Indices: 1976472--1976519 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
1976462 TTGCAGCGAT
* *
1976472 TGATTTGATTAAT
1 TGATTTTATTAAC
* *
1976485 TGATTTGATCAAC
1 TGATTTTATTAAC
1976498 TGATTTTATTAAC
1 TGATTTTATTAAC
1976511 TG-TTTTATT
1 TGATTTTATT
1976520 TAAAAGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 7 0.23
13 24 0.77
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.54
Consensus pattern (13 bp):
TGATTTTATTAAC
Found at i:1987325 original size:29 final size:29
Alignment explanation
Indices: 1987270--1987326 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
1987260 GTATTGTTTA
* *
1987270 TTTAAACACTTATTATTTTATTTTTTTTC
1 TTTAAACACTTATTATTTGATTCTTTTTC
*
1987299 TTTAAACA-TTATTTATTTGGTTCTTTTT
1 TTTAAACACTTA-TTATTTGATTCTTTTT
1987327 ATAATCGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.65
Consensus pattern (29 bp):
TTTAAACACTTATTATTTGATTCTTTTTC
Found at i:1998812 original size:13 final size:13
Alignment explanation
Indices: 1998794--1998820 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1998784 TAAAGCTTTC
1998794 GTTTTCTTTTTTT
1 GTTTTCTTTTTTT
1998807 GTTTTCTTTTTTT
1 GTTTTCTTTTTTT
1998820 G
1 G
1998821 AATTTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.81
Consensus pattern (13 bp):
GTTTTCTTTTTTT
Found at i:2016599 original size:2 final size:2
Alignment explanation
Indices: 2016592--2016653 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
2016582 GTATTTATTA
2016592 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
2016634 AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
2016654 TTGGTGTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:2033644 original size:21 final size:20
Alignment explanation
Indices: 2033606--2033686 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 20
2033596 ATATGGAACA
* *
2033606 AACAGAGAGTACCAAAGTACT
1 AACAGAGAGCA-CAAAGTGCT
2033627 AACAGAGAGCACATAAGTGCTGGGT
1 AACAGAGAGCACA-AAGTGC----T
2033652 AACAGAGAGCACACACAGTGCT
1 AACAGAGAGCACA-A-AGTGCT
2033674 AAACAGAGAGCAC
1 -AACAGAGAGCAC
2033687 GAGGCGTGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
20 2 0.04
21 15 0.30
22 1 0.02
23 12 0.24
25 15 0.30
26 5 0.10
ACGTcount: A:0.43, C:0.21, G:0.25, T:0.11
Consensus pattern (20 bp):
AACAGAGAGCACAAAGTGCT
Found at i:2033678 original size:23 final size:23
Alignment explanation
Indices: 2033605--2033707 Score: 79
Period size: 23 Copynumber: 4.5 Consensus size: 23
2033595 TATATGGAAC
* * *
2033605 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACACAGTGCT
*
2033627 -AACAGAGAGCACATA-AGTGCT
1 AAACAGAGAGCACACACAGTGCT
*
2033648 GGGTAACAGAGAGCACACACAGTGCT
1 ---AAACAGAGAGCACACACAGTGCT
**
2033674 AAACAGAGAGCACGAGGC-GTGCT
1 AAACAGAGAGCAC-ACACAGTGCT
2033697 AAACAGAGAGC
1 AAACAGAGAGC
2033708 GCGCTAGTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
21 16 0.24
22 1 0.01
23 28 0.42
24 2 0.03
25 14 0.21
26 6 0.09
ACGTcount: A:0.42, C:0.20, G:0.27, T:0.11
Consensus pattern (23 bp):
AAACAGAGAGCACACACAGTGCT
Found at i:2036681 original size:16 final size:16
Alignment explanation
Indices: 2036660--2036722 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
2036650 GTAAATTTAT
2036660 TTTTATTAATTTAAAA
1 TTTTATTAATTTAAAA
*
2036676 TTTTATAAATTATAAAA
1 TTTTATTAATT-TAAAA
*
2036693 ---TATCTAAATTAAAA
1 TTTTAT-TAATTTAAAA
* *
2036707 TTTTATCATTTTAAAA
1 TTTTATTAATTTAAAA
2036723 GAGACCATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
14 8 0.22
15 3 0.08
16 17 0.47
17 8 0.22
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTTATTAATTTAAAA
Found at i:2038632 original size:24 final size:24
Alignment explanation
Indices: 2038605--2038650 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
2038595 TTAAATAAAC
* *
2038605 AAATTACATTATAAAAATAATATA
1 AAATTACAATAGAAAAATAATATA
*
2038629 AAATTTCAATAGAAAAATAATA
1 AAATTACAATAGAAAAATAATA
2038651 AACAAAGTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
AAATTACAATAGAAAAATAATATA
Found at i:2046228 original size:12 final size:12
Alignment explanation
Indices: 2046211--2046237 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2046201 TTTGAAAAGT
2046211 ATAAAAATATTA
1 ATAAAAATATTA
2046223 ATAAAAATATTA
1 ATAAAAATATTA
2046235 ATA
1 ATA
2046238 TTTAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAAAAATATTA
Found at i:2046280 original size:20 final size:19
Alignment explanation
Indices: 2046239--2046282 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
2046229 ATATTAATAT
* *
2046239 TTAAATATAAAAATATTAA
1 TTAATTATAAAAATACTAA
*
2046258 TTAATTATATAAAATACTCA
1 TTAATTATA-AAAATACTAA
2046278 TTAAT
1 TTAAT
2046283 AAACTTCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAATTATAAAAATACTAA
Found at i:2046831 original size:30 final size:31
Alignment explanation
Indices: 2046795--2046868 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
2046785 AAATTACACC
*
2046795 AACAGTCACTCAATTTTAACC-TAAAAAAAA
1 AACAGTCACTCAACTTTAACCTTAAAAAAAA
* **
2046825 AACAGTCACTCAACTTTGACCTTAATGAAAA
1 AACAGTCACTCAACTTTAACCTTAAAAAAAA
2046856 AACAGTCACTCAA
1 AACAGTCACTCAA
2046869 ATTTCAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 19 0.49
31 20 0.51
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.23
Consensus pattern (31 bp):
AACAGTCACTCAACTTTAACCTTAAAAAAAA
Found at i:2048469 original size:17 final size:18
Alignment explanation
Indices: 2048447--2048488 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
2048437 TAATAAAAAT
2048447 ATAATTT-TATTATTT-TA
1 ATAATTTATATT-TTTATA
2048464 ATAATTTATATTTTTATA
1 ATAATTTATATTTTTATA
2048482 A-AATTTA
1 ATAATTTA
2048489 AAGAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATAATTTATATTTTTATA
Found at i:2050001 original size:34 final size:34
Alignment explanation
Indices: 2049958--2050038 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 34
2049948 AAAGTCCAAG
* *
2049958 TAAACAATATTTGGATAAGGTAAAATATAAAAAAT
1 TAAA-AATATTTGGATAAGATAAAAGATAAAAAAT
* *
2049993 TAAAAATATTTGGGTAAGATAAAAGGTAAAAAAT
1 TAAAAATATTTGGATAAGATAAAAGATAAAAAAT
2050027 TAAAAATATTTG
1 TAAAAATATTTG
2050039 AGTTTAGTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 38 0.90
35 4 0.10
ACGTcount: A:0.56, C:0.01, G:0.14, T:0.30
Consensus pattern (34 bp):
TAAAAATATTTGGATAAGATAAAAGATAAAAAAT
Found at i:2051854 original size:31 final size:31
Alignment explanation
Indices: 2051815--2051885 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
2051805 CTACAATATG
2051815 ATCATTGAATTATTTGAAAGTTTTCATTTAA
1 ATCATTGAATTATTTGAAAGTTTTCATTTAA
* * *
2051846 TTCATTGAATTATTTGAAATTTTTTATTTAA
1 ATCATTGAATTATTTGAAAGTTTTCATTTAA
*
2051877 ATCACTGAA
1 ATCATTGAA
2051886 CTGATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.49
Consensus pattern (31 bp):
ATCATTGAATTATTTGAAAGTTTTCATTTAA
Found at i:2057589 original size:2 final size:2
Alignment explanation
Indices: 2057582--2057624 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
2057572 TAGGTTATTC
*
2057582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T CT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2057622 AT A
1 AT A
2057625 GTATTTGTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:2069599 original size:20 final size:20
Alignment explanation
Indices: 2069563--2069600 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2069553 ATTTATGATT
*
2069563 CCTTATTTCTATCTCATTAG
1 CCTTATTTCAATCTCATTAG
*
2069583 CCTTATTTCAATTTCATT
1 CCTTATTTCAATCTCATT
2069601 TCGTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.53
Consensus pattern (20 bp):
CCTTATTTCAATCTCATTAG
Found at i:2069815 original size:21 final size:21
Alignment explanation
Indices: 2069791--2069834 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
2069781 GAGCTTATAA
2069791 TATATAATTTATATTAGATGT
1 TATATAATTTATATTAGATGT
2069812 TATATAATTTATATTAGATGT
1 TATATAATTTATATTAGATGT
2069833 TA
1 TA
2069835 GAATATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (21 bp):
TATATAATTTATATTAGATGT
Found at i:2069816 original size:12 final size:12
Alignment explanation
Indices: 2069799--2069834 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
2069789 AATATATAAT
2069799 TTATATTAGATG
1 TTATATTAGATG
2069811 TTATA-TA-AT-
1 TTATATTAGATG
2069820 TTATATTAGATG
1 TTATATTAGATG
2069832 TTA
1 TTA
2069835 GAATATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
9 5 0.24
10 4 0.19
11 4 0.19
12 8 0.38
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (12 bp):
TTATATTAGATG
Found at i:2069879 original size:16 final size:16
Alignment explanation
Indices: 2069853--2069892 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
2069843 ATTCTATTAT
*
2069853 ATATTTATATATTCTA
1 ATATATATATATTCTA
*
2069869 TTATATATATATTCTA
1 ATATATATATATTCTA
2069885 ATATATAT
1 ATATATAT
2069893 TAGAATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATATATATATTCTA
Found at i:2069987 original size:57 final size:56
Alignment explanation
Indices: 2069887--2069996 Score: 136
Period size: 57 Copynumber: 1.9 Consensus size: 56
2069877 ATATTCTAAT
* *
2069887 ATATATTAGAATTTATTTATATATTTTATTAATTTTTTTATATATTTC-ATTTATA
1 ATATATTAGAATTTATTTATATATTTTATTAATTTATTGATATATTTCTATTTATA
*
2069942 ATATATTAGAATATTATATTA-ATATTATT-TTTATATTATTGATATATTTCTATTT
1 ATATATTAGAAT-TTAT-TTATATATT-TTATTAAT-TTATTGATATATTTCTATTT
2069997 CATTTATTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
55 12 0.26
56 13 0.28
57 18 0.38
58 4 0.09
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (56 bp):
ATATATTAGAATTTATTTATATATTTTATTAATTTATTGATATATTTCTATTTATA
Found at i:2070004 original size:9 final size:9
Alignment explanation
Indices: 2069992--2070019 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
2069982 GATATATTTC
2069992 TATTTCATT
1 TATTTCATT
2070001 TATTTCATT
1 TATTTCATT
2070010 TATTTCATT
1 TATTTCATT
2070019 T
1 T
2070020 GCATTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (9 bp):
TATTTCATT
Found at i:2074495 original size:17 final size:17
Alignment explanation
Indices: 2074473--2074507 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
2074463 TATAGACTCG
*
2074473 TTTAGATATACTTAGTA
1 TTTAGATATAATTAGTA
2074490 TTTAGATATAATTAGTA
1 TTTAGATATAATTAGTA
2074507 T
1 T
2074508 AATATACGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (17 bp):
TTTAGATATAATTAGTA
Found at i:2085878 original size:19 final size:19
Alignment explanation
Indices: 2085856--2085900 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
2085846 TTATATTAGG
2085856 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
2085875 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
2085894 ATTTAAT
1 ATTTAAT
2085901 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:2086724 original size:15 final size:16
Alignment explanation
Indices: 2086704--2086733 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2086694 CTTCCCTATT
2086704 TTCTA-TTTCTTTTAG
1 TTCTATTTTCTTTTAG
2086719 TTCTATTTTCTTTTA
1 TTCTATTTTCTTTTA
2086734 TTTTTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (16 bp):
TTCTATTTTCTTTTAG
Found at i:2086738 original size:22 final size:22
Alignment explanation
Indices: 2086699--2086759 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
2086689 TTTGACTTCC
* *
2086699 CTATTTTCTATTT-CTTTTAGTT
1 CTATTTTCT-TTTATTTTTAATT
2086721 CTATTTTCTTTTATTTTTAATT
1 CTATTTTCTTTTATTTTTAATT
*
2086743 CT-GTTTCTTTTATTTTT
1 CTATTTTCTTTTATTTTT
2086760 CTTTAGATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.13, C:0.11, G:0.03, T:0.72
Consensus pattern (22 bp):
CTATTTTCTTTTATTTTTAATT
Found at i:2091602 original size:45 final size:45
Alignment explanation
Indices: 2091538--2091627 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
2091528 ATTGGTTTAA
2091538 GAAATATTAAATATAGTCTTCATCGGGAGTTAAAAGGAAAAATAT
1 GAAATATTAAATATAGTCTTCATCGGGAGTTAAAAGGAAAAATAT
2091583 GAAATATTAAATATAGTCTTCATCGGGAGTTAAAAGGAAAAATAT
1 GAAATATTAAATATAGTCTTCATCGGGAGTTAAAAGGAAAAATAT
2091628 TTTGTAGGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.29
Consensus pattern (45 bp):
GAAATATTAAATATAGTCTTCATCGGGAGTTAAAAGGAAAAATAT
Found at i:2095149 original size:16 final size:16
Alignment explanation
Indices: 2095128--2095159 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2095118 GATATGATAC
2095128 CATTTGAGAAGACGAT
1 CATTTGAGAAGACGAT
*
2095144 CATTTGAGAGGACGAT
1 CATTTGAGAAGACGAT
2095160 ATCAGACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (16 bp):
CATTTGAGAAGACGAT
Found at i:2107275 original size:26 final size:25
Alignment explanation
Indices: 2107232--2107280 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
2107222 AATTCAATTC
*
2107232 ATTTTAAATTTGATTATATTATTTTT
1 ATTTTAAAATTGATTATA-TATTTTT
2107258 ATTTTAAAATT-ATATATATATTT
1 ATTTTAAAATTGAT-TATATATTT
2107281 ATTAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTTTAAAATTGATTATATATTTTT
Found at i:2117534 original size:27 final size:27
Alignment explanation
Indices: 2117483--2117534 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
2117473 CTAAATTATG
* * * *
2117483 TTTAGATATTTTATTTTTAATTAATTA
1 TTTAAATATTTTATATTAAAATAATTA
2117510 TTTAAATATTTTATATTAAAATAAT
1 TTTAAATATTTTATATTAAAATAAT
2117535 AAAAGATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
TTTAAATATTTTATATTAAAATAATTA
Found at i:2126733 original size:42 final size:42
Alignment explanation
Indices: 2126669--2126749 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
2126659 TGGTGCGGGA
* * *
2126669 GGTGGTGCAGGAGGACTGGCTCTAATTGGGGCAGGAGGTGGT
1 GGTGGTGCAGGAGAACTAGCTCTAATCGGGGCAGGAGGTGGT
*
2126711 GGTGGTGGAGGAGAACTAGCTCTAATCGGGGCAGGAGGT
1 GGTGGTGCAGGAGAACTAGCTCTAATCGGGGCAGGAGGT
2126750 TCTGGAGGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.20, C:0.12, G:0.48, T:0.20
Consensus pattern (42 bp):
GGTGGTGCAGGAGAACTAGCTCTAATCGGGGCAGGAGGTGGT
Found at i:2130166 original size:20 final size:20
Alignment explanation
Indices: 2130141--2130194 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 20
2130131 TTGAAAACTA
2130141 AAATTAATTTTAATTTATAT
1 AAATTAATTTTAATTTATAT
*
2130161 AAATTAATTTTTATTTTATAT
1 AAATTAA-TTTTAATTTATAT
2130182 AAATTAATTTTAA
1 AAATTAATTTTAA
2130195 CTAAAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AAATTAATTTTAATTTATAT
Found at i:2138828 original size:72 final size:72
Alignment explanation
Indices: 2138680--2138821 Score: 196
Period size: 72 Copynumber: 2.0 Consensus size: 72
2138670 CCTTGATCAC
* *
2138680 ACCACTCAAGTTGTTTGATGACAAATCAAGCCAAGTAAGGTTCACAAGATCAAAAATGGAATCGA
1 ACCACTCAAGTTGTTTGATGACAAATCAAGACAAGTAAGGTTAACAAGATCAAAAATGGAATCGA
2138745 GTATTAG
66 GTATTAG
* * * * *
2138752 ACCACTGAAGTTGTTTGATGACAACTGAAGATAAGTTAA-GTTAACAAGATGAAAAATGGAATCG
1 ACCACTCAAGTTGTTTGATGACAAATCAAGACAAG-TAAGGTTAACAAGATCAAAAATGGAATCG
*
2138816 GGTATT
65 AGTATT
2138822 GAACCACCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 58 0.95
73 3 0.05
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (72 bp):
ACCACTCAAGTTGTTTGATGACAAATCAAGACAAGTAAGGTTAACAAGATCAAAAATGGAATCGA
GTATTAG
Found at i:2144843 original size:15 final size:15
Alignment explanation
Indices: 2144823--2144860 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
2144813 ATATAGTGAT
2144823 ATATATGTGAGAAAA
1 ATATATGTGAGAAAA
* *
2144838 ATATATGTGTGAAAT
1 ATATATGTGAGAAAA
2144853 AT-TATGTG
1 ATATATGTG
2144861 GTTAATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (15 bp):
ATATATGTGAGAAAA
Found at i:2145028 original size:23 final size:24
Alignment explanation
Indices: 2144981--2145041 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 24
2144971 TTGTGATCAA
*
2144981 AATTG-AAAGTGAAAGTGAAAGTG
1 AATTGTAAATTGAAAGTGAAAGTG
*
2145004 AATT-TAAAATTGAAAGTGATA-TG
1 AATTGT-AAATTGAAAGTGAAAGTG
2145027 AATTGTAAATTGAAA
1 AATTGTAAATTGAAA
2145042 ATCCTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 19 0.58
24 14 0.42
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (24 bp):
AATTGTAAATTGAAAGTGAAAGTG
Found at i:2145043 original size:30 final size:30
Alignment explanation
Indices: 2144979--2145043 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
2144969 ATTTGTGATC
* *
2144979 AAAATTGAAAGTGAAAGTGAAAGTGAATTT
1 AAAATTGAAAGTGAAAGTGAAAGTAAATTG
* *
2145009 AAAATTGAAAGTGATA-TGAATTGTAAATTG
1 AAAATTGAAAGTGAAAGTGAA-AGTAAATTG
2145039 AAAAT
1 AAAAT
2145044 CCTTATTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (30 bp):
AAAATTGAAAGTGAAAGTGAAAGTAAATTG
Found at i:2148493 original size:16 final size:16
Alignment explanation
Indices: 2148470--2148541 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
2148460 CGTTTGGTTC
*
2148470 GCTGTAATAGAATAGA
1 GCTGTAATGGAATAGA
*
2148486 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
2148502 ACTGTAATGGAATATA
1 GCTGTAATGGAATAGA
2148518 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
2148534 GCTGTAAT
1 GCTGTAAT
2148542 CAGTAATTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:2148778 original size:58 final size:55
Alignment explanation
Indices: 2148708--2148856 Score: 183
Period size: 58 Copynumber: 2.6 Consensus size: 55
2148698 TTAAATTTTA
*
2148708 ATAATTATTATTAAATATAATTGAATAAAAATAT-TAATTTATTTAATTATATTTTAAC
1 ATAATTATTATTAAATATAATT-AATAAAAATATGTAATTTA-ATAA-TAT-TTTTAAC
*
2148766 ATAATTATTATTAAATATAATTTAATAAAATAATATGTAATTTAATAATATTTTTAAT
1 ATAATTATTATTAAATATAA-TTAAT-AAA-AATATGTAATTTAATAATATTTTTAAC
*
2148824 ATAATTATTATTAAAATATGAATTAGTAAAAAT
1 ATAATTATTATT-AAATAT-AATTAATAAAAAT
2148857 TATAATATAT
Statistics
Matches: 82, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
57 3 0.04
58 44 0.54
59 18 0.22
60 10 0.12
61 7 0.09
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (55 bp):
ATAATTATTATTAAATATAATTAATAAAAATATGTAATTTAATAATATTTTTAAC
Found at i:2156415 original size:23 final size:24
Alignment explanation
Indices: 2156368--2156417 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
2156358 TTTCTGTAAA
* **
2156368 AAAAAATTATTCATTTTTATTATT
1 AAAAAATTATTCATTGTTAGAATT
2156392 AAAAAATTATTCA-TGTTAGAATT
1 AAAAAATTATTCATTGTTAGAATT
2156415 AAA
1 AAA
2156418 TACGTAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
AAAAAATTATTCATTGTTAGAATT
Found at i:2157040 original size:34 final size:34
Alignment explanation
Indices: 2156996--2157068 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
2156986 TGTTCAACTT
* * *
2156996 TTAACCTCCCTTGACTTTTAACCTTCCATCTTTC
1 TTAACATCCCTTGACCTTTAACCTTCCATCTTCC
*
2157030 TTAACATCCCTTGACCTTTAACCTTCTATCTTCC
1 TTAACATCCCTTGACCTTTAACCTTCCATCTTCC
2157064 TTAAC
1 TTAAC
2157069 CTTTTATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.21, C:0.34, G:0.03, T:0.42
Consensus pattern (34 bp):
TTAACATCCCTTGACCTTTAACCTTCCATCTTCC
Found at i:2176645 original size:819 final size:821
Alignment explanation
Indices: 2161016--2179603 Score: 35547
Period size: 821 Copynumber: 22.7 Consensus size: 821
2161006 CATTTCCCCA
* *
2161016 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTAACAATGGTGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
* * *
2161081 AAAAAAGAATTTGAAATGAAAGACCTTGGAAAGACAATATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2161146 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2161211 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
*
2161276 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCTTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2161341 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
*
2161406 AGATTTAGCTCTTGTTCAACCCGAAGATATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2161471 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
*
2161536 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCCTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2161601 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2161666 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2161731 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2161796 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2161837 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2161902 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2161967 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2162032 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
*
2162097 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCTTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2162162 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2162227 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2162292 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2162357 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2162422 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
* *
2162487 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATAGATTGAAACAATTTGGACGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2162552 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTACAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2162617 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
* * *
2162658 TGTATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAATGACAATGGAGCGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
*
2162723 AA-AAAGAATTTGAAATGAAAGACCTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2162787 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2162852 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2162917 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2162982 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2163047 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2163112 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2163177 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2163242 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2163307 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2163372 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2163437 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2163478 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2163543 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2163608 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2163673 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
* *
2163738 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCTTGAAGTACAATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
*
2163803 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCGACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2163868 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2163933 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2163998 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2164063 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
* *
2164128 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATAGATTGAAACAATTTGGACGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2164193 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTACAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2164258 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
* * *
2164299 TGTATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAATGACAATGGAGCGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
* *
2164364 AAAAAAGAATTTGAAATGAAAGACCTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2164429 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2164494 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2164559 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2164624 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2164689 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2164754 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2164819 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2164884 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2164949 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2165014 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2165079 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2165120 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2165185 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2165250 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCT-AGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2165314 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
* *
2165379 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCTTGAAGTACAATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
*
2165444 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCGACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2165509 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2165574 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTACAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2165639 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2165704 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2165769 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2165834 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2165899 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2165940 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2166005 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2166070 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2166135 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2166200 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2166265 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2166330 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2166395 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2166460 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2166525 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2166590 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2166655 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2166720 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2166761 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2166826 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2166891 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2166956 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
*
2167021 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCTTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2167086 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2167151 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2167216 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2167281 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2167346 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2167411 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGACGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2167476 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTACAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2167541 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
* * *
2167582 TGTATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAATGACAATGGAGCGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
* *
2167647 AAAAAAGAATTTGAAATGAAAGACCTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2167712 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2167777 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2167842 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2167907 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2167972 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2168037 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
*
2168102 ATGCAAGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2168167 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTTAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2168232 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGCCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
* *
2168297 ATAATCACCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCAAGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2168362 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
*
2168403 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGAAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2168468 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2168533 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2168598 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2168663 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2168728 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2168793 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2168858 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2168923 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2168988 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2169053 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2169118 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2169183 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2169224 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2169289 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2169354 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2169419 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2169484 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
*
2169549 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTCTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2169614 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2169679 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2169744 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2169809 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2169874 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2169939 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2170004 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2170045 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2170110 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2170175 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2170240 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2170305 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2170370 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2170435 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2170500 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2170565 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2170630 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2170695 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2170760 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2170825 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2170866 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2170931 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2170996 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2171061 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2171126 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2171191 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2171256 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2171321 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2171386 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2171451 GGTACTGCTATTTCTTAGCACT-TATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2171515 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2171580 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCAAGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2171645 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2171686 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2171751 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2171816 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2171881 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2171946 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
*
2172011 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTCTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2172076 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2172141 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2172206 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
*
2172271 GGTACTGCTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2172336 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2172401 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2172466 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
*
2172507 TGCATGTTGATGATTTAAATATTATTAGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2172572 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2172637 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2172702 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2172767 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2172832 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
* * *
2172897 AGATTTAGCTCTTGTTCAACCCGAAGATATTGGAATGGGGTTAAGCATGTTTTTCAGTATCCTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2172962 AGGCACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2173027 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2173092 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2173157 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2173222 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2173287 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2173328 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2173393 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2173458 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2173523 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2173588 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
*
2173653 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTCTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2173718 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2173783 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2173848 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2173913 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2173978 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGTGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2174043 ATAATCGCCTTTAGTGAATACTTATTGAGGGAGTGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2174108 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2174149 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2174214 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2174279 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2174344 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
*
2174409 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGTTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2174474 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
*
2174539 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTAATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2174604 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2174669 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2174734 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2174799 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGACGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2174864 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTACAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
* *
2174929 TTTTATAAAGAAGTTTAGATCAGGATTTGTTATAATTACTA
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
* *
2174970 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAATGACAATGGAGCGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
* *
2175035 AAAAAAGAATTTGAAATGAAAGACCTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2175100 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2175165 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2175230 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2175295 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2175360 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2175425 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2175490 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2175555 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2175620 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2175685 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2175750 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
*
2175791 TGCATGTTGATGATTTAAATATTATTGGAACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2175856 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2175921 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2175986 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2176051 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2176116 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2176181 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAAT-GGGTTAAGCATG-TTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2176244 AGGTACAAGAGACATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2176309 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2176374 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2176439 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGTGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2176504 ATAATCGCCTTTAGTGAATACTTATTGAGGGAGTGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2176569 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
2176610 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
2176675 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2176740 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2176805 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
*
2176870 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGTTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2176935 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
*
2177000 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTAATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2177065 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2177130 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2177195 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2177260 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGACGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2177325 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTACAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
* *
2177390 TTTTATAAAGAAGTTTAGATCAGGATTTGTTATAATTACTA
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
*
2177431 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTA-TGACAATGGAGCGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
* *
2177495 AAAAAAGAATTTGAAATGAAAGACCTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2177560 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2177625 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2177690 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2177755 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2177820 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
2177885 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2177950 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
* *
2178015 GGTACTGTTATTTCTTAGCACTTTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
2178080 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
2178145 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
716 ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
2178210 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
781 TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
*
2178251 TGCATGTTGATGATTTAAATATTATTGGAACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
1 TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
*
2178316 AAGAAAGAATTTGAAATAAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
66 AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
2178381 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
131 CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
2178446 TGCATAACGCACATCCGTTGAG-CCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
196 TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
2178510 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
261 TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
2178575 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
326 GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
2178640 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
391 AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
*
2178705 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAATTGGTTTTGCAG
456 AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
2178770 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
521 ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
2178835 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
586 GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
*
2178900 AGAACATTACT-AATCAAATTAAACAGATCCCTTTATGGA-T-AAACAATTT--TCGCAT-TGGT
651 AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
*
2178959 ATAATCGCCTTATAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCACATTC
716 ATAATCGCCTT-TAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCC-CATGC
* ** *
2179024 ATTTTTATAATAGAATTTTTAATCAGGATTTGTTATAATTACTC
779 ATTTTTATAA-AGAAGTTTGGATCAGGATTTGTTATAATTACTG
** **
2179068 TTTATGTT-ATGATTTTAAATATTATTGGGACTCCT--TTAGATTTTAGTGACAATGGAGTGCTT
1 TGCATGTTGATGA-TTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTT
* * * *
2179130 AAATAAAGAATTTGAAATGAAAGACTTTGAAAAGACAAGATTTAGTTCTAAGGTTACAAATTGAA
65 AAAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTG-TCTAAGGTTACAAATTGAG
*
2179195 CACCTAAAAAATTGAATCCTTGTG-ATCAAATAACATATATAG-AAAAATGCTAAGAAGATTTTA
129 CACCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTA
* **
2179258 CATGCATAACGCACATCCG-TGAGCCCCCCAATGGTTGTTAGGTATACTTAATAAAAATAAAGAT
194 CATGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGT-CACTTAATGTAAATAAAGAT
** * ** * * **
2179322 TATTTTACGTCCTTTAGAAAAT-ATGAA-ATTTTCTTAATCTTGAA-TATAATATTTAA-TGCTA
258 CCTTTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTA
* * * *
2179383 TTGGTGCATTAAT-TATCTTG-TAGTCATACATGACTTGAT-TATCATTTTTTATCGACTTATTA
323 TTGGTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTA
* * *
2179445 GCAA-ATTTAGCTCTTG-TCAACCCGAAGACATTTGAAT----TTAA-AATGTTTTTAATTATCT
388 GCAAGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCT
* * * *** *
2179503 TTAAGGTACAATAGATATAAGTTTATTTTTTAAAATTATATCTATCCAAAA-AGAATTAATTGG-
453 TCAAGGTACAAGAGATATGAGTTTA-TTTTT--CCCTA-ATCTATCCAAAACAGAATTAGTTGGT
* * * *
2179566 TTTGCAGATGCTGGGTAATTTTCTAAT-TTCACAATGCT
514 TTTGCAGATGCAGGGTACTTATCTAATCCTCACAATGCT
2179604 GATTACCATC
Statistics
Matches: 17533, Mismatches: 217, Indels: 53
0.98 0.01 0.00
Matches are distributed among these distances:
801 37 0.00
802 19 0.00
803 24 0.00
804 14 0.00
805 12 0.00
806 20 0.00
807 12 0.00
808 24 0.00
809 19 0.00
810 7 0.00
811 17 0.00
812 10 0.00
813 19 0.00
814 79 0.00
815 169 0.01
816 60 0.00
817 65 0.00
818 1 0.00
819 831 0.05
820 3716 0.21
821 12378 0.71
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (821 bp):
TGCATGTTGATGATTTAAATATTATTGGGACTCCTGAAGAGATTTTAGTGACAATGGAGTGCTTA
AAGAAAGAATTTGAAATGAAAGACTTTGGAAAGACAAGATTTTGTCTAAGGTTACAAATTGAGCA
CCTAAAAAATTGAATCCTTGTGCATCAAACAACATATATAGAAAAAATGCTAAGAAGATTTTACA
TGCATAACGCACATCCGTTGAGCCCCCCAATGGTTGTTAGGTCACTTAATGTAAATAAAGATCCT
TTTTCGTCCTCGAGAAAATGATGAAGATTTTCTTGATCCTGAAGTACCATATTTAAGTGCTATTG
GTGCATTGATGTATCTTGCTAGTCATACATGACTTGATATATCATTTGTTGTCAACTTATTAGCA
AGATTTAGCTCTTGTTCAACCCGAAGACATTGGAATGGGGTTAAGCATGTTTTTCATTATCTTCA
AGGTACAAGAGATATGAGTTTATTTTTCCCTAATCTATCCAAAACAGAATTAGTTGGTTTTGCAG
ATGCAGGGTACTTATCTAATCCTCACAATGCTCGATCACAAGCTGATTATGCTTTCACATATGGT
GGTACTGCTATTTCTTAGCACTCTATGAAACAAACAATTACTGCTACAGTTAATTCAGGTTCTCG
AGAACATTACTCAATCAAATTAAACAGATCCCTTTATGGATTGAAACAATTTGGGCGCATGTGGT
ATAATCGCCTTTAGTGAATACTTATTGAGGGAATGCTATAAGAATGATCCCATTTCCCCATGCAT
TTTTATAAAGAAGTTTGGATCAGGATTTGTTATAATTACTG
Found at i:2182901 original size:228 final size:228
Alignment explanation
Indices: 2182021--2183370 Score: 2056
Period size: 228 Copynumber: 6.0 Consensus size: 228
2182011 GTAGTGATAC
* * *
2182021 AACACATGCACAAAGATGCTTTG-AATATTAATAACTAAGAAAGGCACATCCATGAGAACTCGA-
1 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCGAC
* *
2182084 ATGAGACTGTGGATGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCAAGCTTC
66 A--AGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTC
* * *
2182149 ACTACTGTGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAATTCTAGATAATGATATAC
129 ACTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAAC
*
2182214 TCAATTGCGAACCATTGAGGATCTCCATATCATTA
194 TCAATTGCGAACCATCGAGGATCTCCATATCATTA
** *
2182249 AACACATTAAC-AAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCCTGAGGACTCGAC
1 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCGAC
*
2182313 AAGACTGAT-GACGGCCAAAACAAATGATATAAAGTTAGAAGAGACATATAAGTTGCGAGCTTCA
66 AAGACTG-TGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
*
2182377 CTACTGTGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
130 CTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
*
2182442 CAATTGCAAACCATCGAGGATCTCCATATCATTA
195 CAATTGCGAACCATCGAGGATCTCCATATCATTA
*
2182476 AACACATGCACAAAGATGCTTTGAAATATTGATAACTATGAAAGGCACATGCATGAGGACTCGAA
1 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCG-A
* *
2182541 CAAGACTGTGAACGGCCAAAACAAACGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
65 CAAGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
*
2182606 CTACTATGCCAAAATGTAAACCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
130 CTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
* * *
2182671 CAATTGCGAACCATCAAGGATCACCGTATCATTA
195 CAATTGCGAACCATCGAGGATCTCCATATCATTA
*
2182705 AACACAT-CAACAAAGATGCTTTGAAATGTTGATAACTAAGAAAGGCACATGCATGAGGACTCGA
1 AACACATGC-ACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCGA
* *
2182769 CAAGACTGTGGATGGCCAAAACAAATGATATAAAGTTAGAAGAGACATATAAGTTGCGAGCTTCA
65 CAAGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
**
2182834 CTACTATGCCAAAATGTAAATCAATCTAACTACCTAGGAGCTTAAGTTCTAGATAATGATAAACT
130 CTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
* *
2182899 CAATTGCGAACCATCGGGGATCTCCGTATCATTA
195 CAATTGCGAACCATCGAGGATCTCCATATCATTA
*
2182933 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATG-GGTACTCAA
1 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGG-ACTCGA
* * * * *
2182997 CAAGACTGTGGATGGCCAAAACAAATGATACAAAGCTAGAAGAGATATATAAGTAGCAAGCTTCA
65 CAAGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
*
2183062 CTACTATGCCAAAATGTAAATCAATTTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
130 CTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
* *
2183127 CAATTGCGAACCATCAAGTATCTCCATATCATTA
195 CAATTGCGAACCATCGAGGATCTCCATATCATTA
2183161 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCGAA
1 AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCG-A
* * *
2183226 CAAGACTTTGGACGGCCAAATCAAATTATATAAAGCTAG-A-AG-------A-----GAGCTTCA
65 CAAGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCA
* * * *
2183277 CTAATATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGACAATAATAAACA
130 CTACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACT
** * *
2183342 CAATCACAAACCTTCGAGGATCTCCATAT
195 CAATTGCGAACCATCGAGGATCTCCATAT
2183371 ACTAATTGTT
Statistics
Matches: 1041, Mismatches: 70, Indels: 35
0.91 0.06 0.03
Matches are distributed among these distances:
215 90 0.09
220 1 0.00
227 177 0.17
228 521 0.50
229 252 0.24
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.25
Consensus pattern (228 bp):
AACACATGCACAAAGATGCTTTGAAATATTGATAACTAAGAAAGGCACATGCATGAGGACTCGAC
AAGACTGTGGACGGCCAAAACAAATGATATAAAGCTAGAAGAGACATATAAGTTGCGAGCTTCAC
TACTATGCCAAAATGTAAATCAATCTAACTATTTAGGAGCTTAAGTTCTAGATAATGATAAACTC
AATTGCGAACCATCGAGGATCTCCATATCATTA
Found at i:2189496 original size:23 final size:21
Alignment explanation
Indices: 2189470--2189522 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
2189460 CACTAATTCT
2189470 ATTTTAAAAATTAATTAAATTAA
1 ATTTTAAAAATT--TTAAATTAA
* *
2189493 ATTTTATAATATTTTTAATTAA
1 ATTTTA-AAAATTTTAAATTAA
2189515 ATTTTAAA
1 ATTTTAAA
2189523 TTTACAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 14 0.52
23 6 0.22
24 5 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTTAAAAATTTTAAATTAA
Found at i:2192497 original size:2 final size:2
Alignment explanation
Indices: 2192492--2192537 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
2192482 AAAAAAGTAG
*
2192492 AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2192534 AT AT
1 AT AT
2192538 TTAAACAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2197126 original size:17 final size:17
Alignment explanation
Indices: 2197092--2197127 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
2197082 TAGTTTTCAG
2197092 TTCAACAATCATTTTTT
1 TTCAACAATCATTTTTT
*
2197109 TTCAA-AATCATTTATT
1 TTCAACAATCATTTTTT
2197125 TTC
1 TTC
2197128 TTAAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (17 bp):
TTCAACAATCATTTTTT
Found at i:2198192 original size:88 final size:88
Alignment explanation
Indices: 2198043--2198219 Score: 309
Period size: 88 Copynumber: 2.0 Consensus size: 88
2198033 GACTTCATTG
* * *
2198043 AGGTAACCCCTTCTCATCATATCTTTATATCGTTGTTGTTGACATTCTCTTAGCTCTCTTCGACA
1 AGGTAACCCCTTCTCACCATATCTTTATATCGTTGTTATTAACATTCTCTTAGCTCTCTTCGACA
2198108 AGCGCCTATAAGATGGAAGCTTT
66 AGCGCCTATAAGATGGAAGCTTT
* *
2198131 AGGTAACCCCTTCTCACCATATTTTTGTATCGTTGTTATTAACATTCTCTTAGCTCTCTTCGACA
1 AGGTAACCCCTTCTCACCATATCTTTATATCGTTGTTATTAACATTCTCTTAGCTCTCTTCGACA
2198196 AGCGCCTATAAGATGGAAGCTTT
66 AGCGCCTATAAGATGGAAGCTTT
2198219 A
1 A
2198220 TTGGTTATTG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (88 bp):
AGGTAACCCCTTCTCACCATATCTTTATATCGTTGTTATTAACATTCTCTTAGCTCTCTTCGACA
AGCGCCTATAAGATGGAAGCTTT
Found at i:2205475 original size:25 final size:25
Alignment explanation
Indices: 2205420--2205469 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
2205410 TCTTAGTCAG
* *
2205420 ATTTTAAATTAAATAATTTTTAAAA
1 ATTTAAAATTAAATAATTTGTAAAA
*
2205445 ATTTAAAATTATATAATTATGTAAA
1 ATTTAAAATTAAATAATT-TGTAAA
2205470 TATTAATATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
ATTTAAAATTAAATAATTTGTAAAA
Found at i:2216791 original size:4 final size:4
Alignment explanation
Indices: 2216784--2216813 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
2216774 TATGTATTTA
2216784 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
2216814 ATTATTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTGT
Found at i:2216885 original size:23 final size:24
Alignment explanation
Indices: 2216829--2216939 Score: 158
Period size: 23 Copynumber: 4.7 Consensus size: 24
2216819 TCATTAACAT
2216829 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTATA
*
2216853 TGTTCATGAACATGTTC-ATTGA-A
1 TGTTCGTGAACATGTTCAATT-ATA
2216876 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTATA
*
2216900 TGTTCATGAACATGTTC-ATTGA-A
1 TGTTCGTGAACATGTTCAATT-ATA
2216923 TGTTCGTGAACATGTTC
1 TGTTCGTGAACATGTTC
2216940 GGTTAAGTTA
Statistics
Matches: 79, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
23 41 0.52
24 38 0.48
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (24 bp):
TGTTCGTGAACATGTTCAATTATA
Found at i:2216889 original size:47 final size:47
Alignment explanation
Indices: 2216829--2216939 Score: 222
Period size: 47 Copynumber: 2.4 Consensus size: 47
2216819 TCATTAACAT
2216829 TGTTCGTGAACATGTTCAATTATATGTTCATGAACATGTTCATTGAA
1 TGTTCGTGAACATGTTCAATTATATGTTCATGAACATGTTCATTGAA
2216876 TGTTCGTGAACATGTTCAATTATATGTTCATGAACATGTTCATTGAA
1 TGTTCGTGAACATGTTCAATTATATGTTCATGAACATGTTCATTGAA
2216923 TGTTCGTGAACATGTTC
1 TGTTCGTGAACATGTTC
2216940 GGTTAAGTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (47 bp):
TGTTCGTGAACATGTTCAATTATATGTTCATGAACATGTTCATTGAA
Found at i:2216940 original size:12 final size:12
Alignment explanation
Indices: 2216818--2216939 Score: 85
Period size: 12 Copynumber: 10.2 Consensus size: 12
2216808 TTGTTTATTA
*
2216818 TTCATTAACATTG
1 TTCATGAACA-TG
*
2216831 TTCGTGAACATG
1 TTCATGAACATG
* *
2216843 TTCAAT-TATATG
1 TTC-ATGAACATG
2216855 TTCATGAACATG
1 TTCATGAACATG
2216867 TTCATTG-A-ATG
1 TTCA-TGAACATG
*
2216878 TTCGTGAACATG
1 TTCATGAACATG
* *
2216890 TTCAAT-TATATG
1 TTC-ATGAACATG
2216902 TTCATGAACATG
1 TTCATGAACATG
2216914 TTCATTG-A-ATG
1 TTCA-TGAACATG
*
2216925 TTCGTGAACATG
1 TTCATGAACATG
2216937 TTC
1 TTC
2216940 GGTTAAGTTA
Statistics
Matches: 85, Mismatches: 14, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
10 4 0.05
11 18 0.21
12 49 0.58
13 14 0.16
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (12 bp):
TTCATGAACATG
Found at i:2219941 original size:25 final size:25
Alignment explanation
Indices: 2219907--2219957 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
2219897 TTTCGACCAA
2219907 ACAGAATATCACTCATACGAGCCAG
1 ACAGAATATCACTCATACGAGCCAG
* *
2219932 ACAGAATATCATTCTTACGAGCCAG
1 ACAGAATATCACTCATACGAGCCAG
2219957 A
1 A
2219958 ATTCAGAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (25 bp):
ACAGAATATCACTCATACGAGCCAG
Found at i:2224369 original size:17 final size:19
Alignment explanation
Indices: 2224340--2224375 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
2224330 GTGACGGTGA
2224340 CGGAGAGTGTCTT-CATGG
1 CGGAGAGTGTCTTCCATGG
2224358 CGGAGA-TGTCTTCCATGG
1 CGGAGAGTGTCTTCCATGG
2224376 TACAGAGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (19 bp):
CGGAGAGTGTCTTCCATGG
Found at i:2226867 original size:19 final size:18
Alignment explanation
Indices: 2226835--2226870 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2226825 GATTGTTTGG
*
2226835 AATTGATAACAAATTGAA
1 AATTGATAAAAAATTGAA
2226853 AATTGGATAAAAAATTGA
1 AATT-GATAAAAAATTGA
2226871 CTATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.03, G:0.14, T:0.28
Consensus pattern (18 bp):
AATTGATAAAAAATTGAA
Found at i:2227138 original size:18 final size:18
Alignment explanation
Indices: 2227115--2227157 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
2227105 GAATAGGTTT
2227115 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
2227133 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
2227151 TTAATTA
1 TTAATTA
2227158 CACCTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:2232284 original size:25 final size:25
Alignment explanation
Indices: 2232225--2232287 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
2232215 CCTTAGGCTT
* *
2232225 ATTAACAAGAATTGAATAATGAACA
1 ATTAAAAAAAATTGAATAATGAACA
* *
2232250 TTTAAAAAAAATTGAATGATGAA-A
1 ATTAAAAAAAATTGAATAATGAACA
2232274 ATTAATGAAAAAAT
1 ATTAA--AAAAAAT
2232288 ATAAAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 5 0.16
25 19 0.61
26 7 0.23
ACGTcount: A:0.59, C:0.03, G:0.11, T:0.27
Consensus pattern (25 bp):
ATTAAAAAAAATTGAATAATGAACA
Found at i:2234809 original size:18 final size:19
Alignment explanation
Indices: 2234769--2234811 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
2234759 TAAATGTCTC
*
2234769 TATAATAATAATAAAATTA
1 TATAATAATAACAAAATTA
*
2234788 -ATAATAA-AACAATATTA
1 TATAATAATAACAAAATTA
2234805 TATAATA
1 TATAATA
2234812 TCTACAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAATAATAACAAAATTA
Found at i:2252554 original size:133 final size:132
Alignment explanation
Indices: 2252125--2252751 Score: 602
Period size: 133 Copynumber: 4.7 Consensus size: 132
2252115 CATCTTTGTC
* * * ** **
2252125 AAGTTT-AAGTCTTTTGTTCCAATGGGCTCTAAGTTTTTCTTCCTTTTTTGTTGGTTCCTATGTT
1 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCAAAGTTTCACTTCC-TTTTTGTTGGTTGGTATGTT
* ** * * * * ** * * *
2252189 CTTTGTTATAATTGTGCTTTTCTGTAATGTGTATCTTCAAGTCTATTGAATTTTTGAGCTTTTGT
65 CTTTGTTATAATTATAATCTGCTGAAATGGGTAGATTCAATTCTATTAAAATTTTGAGCTTTTGT
2252254 TGA
130 TGA
* ** *
2252257 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCTAAGTTTTTCTTCCTTTTTTGTTGGTTTGTA--TT
1 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCAAAGTTTCACTTCC-TTTTTGTTGGTTGGTATGTT
* * ** *
2252320 CTTTGTTATAATTATAATTTGCTGTAATATGTAGATTCAATTCTATT-AAATTTTTAGCTTTTGT
65 CTTTGTTATAATTATAATCTGCTGAAATGGGTAGATTCAATTCTATTAAAATTTTGAGCTTTTGT
2252384 TGA
130 TGA
* *
2252387 AAGTTT-AAGTCTTTTGCTCCAATGGGTT-ATAAGTTTCACTTCTTTTTTGTTGGTTGGTGTGTT
1 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCA-AAGTTTCACTTCCTTTTTGTTGGTTGGTATGTT
* * ** *
2252450 CTTTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTTTATTCTTTTAAAATTTTGAGCTTTT
65 C-TT-TGTTATAATTATAATCTGCTGAAATGGGTAGATTCAATTCTATTAAAATTTTGAGCTTTT
2252515 GTTGA
128 GTTGA
* * * ** *
2252520 AA-TTTCATGTCCTTTGCTCCAATAGGTTCAAAGTTTTTCTTCCTTTTTGTTGGTTAGTATGTTC
1 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCAAAGTTTCACTTCCTTTTTGTTGGTTGGTATGTTC
* * * * * * * * **
2252584 TTTGTTGTAATTATGATTTGTTGTAACGTGTAGATTCAAGTCTATTAAGTTTTTGAGCTTTTTGT
66 TTTGTTATAATTATAATCTGCTGAAATGGGTAGATTCAATTCTATTAAAATTTTGAGC-TTTTGT
*
2252649 TGG
130 TGA
* ** * *
2252652 AAGTTTTAAGTCTTTTGCTTTAATGGGTTCTAAGTCTCACTTCCTTTTTGTTGGTTGGTATGTTC
1 AAGTTTCAAGTCTTTTGCTCCAATGGGTTCAAAGTTTCACTTCCTTTTTGTTGGTTGGTATGTTC
**
2252717 TTTGTGTTATAATCGTAATCTGCTGAAATGGGTAG
66 -TT-TGTTATAATTATAATCTGCTGAAATGGGTAG
2252752 CTTCTGTTGA
Statistics
Matches: 408, Mismatches: 74, Indels: 23
0.81 0.15 0.05
Matches are distributed among these distances:
128 14 0.03
129 32 0.08
130 27 0.07
131 84 0.21
132 56 0.14
133 170 0.42
134 3 0.01
135 22 0.05
ACGTcount: A:0.19, C:0.11, G:0.19, T:0.51
Consensus pattern (132 bp):
AAGTTTCAAGTCTTTTGCTCCAATGGGTTCAAAGTTTCACTTCCTTTTTGTTGGTTGGTATGTTC
TTTGTTATAATTATAATCTGCTGAAATGGGTAGATTCAATTCTATTAAAATTTTGAGCTTTTGTT
GA
Found at i:2252630 original size:263 final size:265
Alignment explanation
Indices: 2252125--2252755 Score: 833
Period size: 263 Copynumber: 2.4 Consensus size: 265
2252115 CATCTTTGTC
* * ** **
2252125 AAGTTTAAGTCTTTTGTTCCAATGGGCTCTAAGTTTTTCTTCCTTTTTTGTTGGTTCCTATGTTC
1 AAGTTTAAGTCTTTTGCTCCAATGGGTTCTAAGTTTCACTT-CTTTTTTGTTGGTTGGTATGTTC
** * * * * * * *
2252190 -TT-TGTTATAATTGTGCTTTTCTGTAATGTGTATCTTCAAGTCTATTGAATTTTTGAGCTTTTG
65 TTTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTCAAGTCTATTAAAATTTTGAGCTTTTG
* * * *
2252253 TTGAAAGTTTCAAGTCTTTTGCTCCAATGGGTTCTAAGTTTTTCTTCCTTTTTTGTTGGTTTGTA
130 TTGAAAGTTTCAAGTCCTTTGCTCCAATAGGTTCAAAGTTTTTCTTCCTTTTTTGTTGGTTAGTA
* *
2252318 TTCTTTGTTATAATTATAATTTGCTGTAATATGTAGATTCAATTCTATTAAATTTTT-AGC-TTT
195 TTCTTTGTTATAATTATAATTTGCTGTAACATGTAGATTCAAGTCTATTAAATTTTTGAGCTTTT
2252381 TGTTGA
260 TGTTGA
* *
2252387 AAGTTTAAGTCTTTTGCTCCAATGGGTTATAAGTTTCACTTCTTTTTTGTTGGTTGGTGTGTTCT
1 AAGTTTAAGTCTTTTGCTCCAATGGGTTCTAAGTTTCACTTCTTTTTTGTTGGTTGGTATGTTCT
** * *
2252452 TTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTTTATTCTTTTAAAATTTTGAGCTTTTGT
66 TTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTCAAGTCTATTAAAATTTTGAGCTTTTGT
*
2252517 TGAAA-TTTCATGTCCTTTGCTCCAATAGGTTCAAAGTTTTTCTTCC-TTTTTGTTGGTTAGTAT
131 TGAAAGTTTCAAGTCCTTTGCTCCAATAGGTTCAAAGTTTTTCTTCCTTTTTTGTTGGTTAGTA-
* * * * *
2252580 GTTCTTTGTTGTAATTATGATTTGTTGTAACGTGTAGATTCAAGTCTATTAAGTTTTTGAGCTTT
195 -TTCTTTGTTATAATTATAATTTGCTGTAACATGTAGATTCAAGTCTATTAAATTTTTGAGCTTT
*
2252645 TTGTTGG
259 TTGTTGA
** * *
2252652 AAGTTTTAAGTCTTTTGCTTTAATGGGTTCTAAGTCTCACTTCCTTTTTGTTGGTTGGTATGTTC
1 AAG-TTTAAGTCTTTTGCTCCAATGGGTTCTAAGTTTCACTTCTTTTTTGTTGGTTGGTATGTTC
*
2252717 TTTGTGTTATAATCGTAATCTGCTGAAATGGGTAGCTTC
65 TTTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTC
2252756 TGTTGAAATT
Statistics
Matches: 320, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
261 35 0.11
262 75 0.23
263 104 0.32
264 3 0.01
265 11 0.03
266 92 0.29
ACGTcount: A:0.19, C:0.12, G:0.18, T:0.51
Consensus pattern (265 bp):
AAGTTTAAGTCTTTTGCTCCAATGGGTTCTAAGTTTCACTTCTTTTTTGTTGGTTGGTATGTTCT
TTGTGTTATAATTGTAATCTGCTGAAATGGGTAGCTTCAAGTCTATTAAAATTTTGAGCTTTTGT
TGAAAGTTTCAAGTCCTTTGCTCCAATAGGTTCAAAGTTTTTCTTCCTTTTTTGTTGGTTAGTAT
TCTTTGTTATAATTATAATTTGCTGTAACATGTAGATTCAAGTCTATTAAATTTTTGAGCTTTTT
GTTGA
Done.