Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 60 of 125
Found at i:18418825 original size:371 final size:370
Alignment explanation
Indices: 18418134--18418838 Score: 924
Period size: 371 Copynumber: 1.9 Consensus size: 370
18418124 ACAACTTTCA
*
18418134 GTCTTTGATATAAAACCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGCCCGTTCGAACA
1 GTCTTTGATATAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGCCCGTTCGAACA
** * * * * *
18418199 TTTCAAACTTTTACGAGTTCTTTTATATTTTTGGTTCCTTAAAGTTTTAAAGACGATCCATTCCT
66 TTTCAAACTTTTACGAGTTCTTTTATAGATCTGATTCCTAAAAGTATTAAAGACGATCAATTCCT
*** * *
18418264 TTGACAAAATTTTGGAACATTACATGCTCGAGAAATCACATCATTTCGTCTAAATAGTTTTTTAT
131 TTGACAAAATTTCCAAACATTACATGCTCGAGAAATCAAATCATTTCGTCTAAATAGTTTTTCAT
18418329 TTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGT
196 TTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGT
* * * *
18418394 TATTGTCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAG
261 TATTGGCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTACAACATCAGTTCCTTAAAG
18418459 TATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTG
326 TATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTG
* *
18418504 GTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTTGCCAAAC-TTC
1 GTCTTTGATA-TAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTT-CTTGCC---CGTT-
* * *
18418567 CGAAC-TTGTCAAA-TTTTATGAGTTCTTTTATAGATCTGATTCCTAAAAGTATTCAAGATGATC
60 CGAACATT-TCAAACTTTTACGAGTTCTTTTATAGATCTGATTCCTAAAAGTATTAAAGACGATC
* * * * *
18418630 AATTCCTTTGA-GAAATTTCCCAAACATTCCATGCTTGGGAAATCAAATCATTTGGTCTAAATAG
124 AATTCCTTTGACAAAATTT-CCAAACATTACATGCTCGAGAAATCAAATCATTTCGTCTAAATAG
* * * **
18418694 TTTTTCA-TTT-TGAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCT
188 TTTTTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCT
* * * * *
18418757 CTCTTGGTTCTTGGCCGAACTTTTGAACTTGTCCAAA-TTTTATGAGTT-TATTTACAACATCAG
253 CTCTTGGTTATTGGCAGAACTTTCGAACTTCT-CAAACTTTTAAGAGTTCT-TTTACAACATCAG
18418820 TTCCTTAAAGTATTCAAGA
316 TTCCTTAAAGTATTCAAGA
18418839 TCACCCATTC
Statistics
Matches: 288, Mismatches: 37, Indels: 19
0.84 0.11 0.06
Matches are distributed among these distances:
369 1 0.00
370 45 0.16
371 120 0.42
372 13 0.05
373 98 0.34
374 11 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (370 bp):
GTCTTTGATATAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGCCCGTTCGAACA
TTTCAAACTTTTACGAGTTCTTTTATAGATCTGATTCCTAAAAGTATTAAAGACGATCAATTCCT
TTGACAAAATTTCCAAACATTACATGCTCGAGAAATCAAATCATTTCGTCTAAATAGTTTTTCAT
TTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGT
TATTGGCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTACAACATCAGTTCCTTAAAG
TATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTG
Found at i:18419014 original size:587 final size:585
Alignment explanation
Indices: 18417921--18419069 Score: 1444
Period size: 587 Copynumber: 2.0 Consensus size: 585
18417911 GCTTTTTGAA
* * *
18417921 TTTGAATTAAAAACTTATTTACTTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAAC
1 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAAC
* *
18417986 TTGTCCAAATTTTAAAAGTTCTTTTATAACTCCGATTCCTATAAGTATGCAAGACGATCCATTCC
66 TTGTCCAAATTTTAAAAGTTCTTTTATAACTCCGATTCCTAAAAGTATGCAAGACGATCAATTCC
* * ** * * * *
18418051 TTCGAGCAGTATCCTGAATATTCCATGCTTTGGAAATCACATCCTTTGCCCTAAATAGTTTGTCA
131 TTCGAGAAATATCCCAAACATTCCATGCTTGGGAAATCAAATCATTTGCCCTAAATAGTTTGTCA
*
18418116 TTTTTTAAACAACTTTCAGTCTTTGATATAAAACCTTATTAACGTGAGAATTGTTTCTCTCTTGG
196 -TTTTTAAACAACTTTCAGTCTTTGATATAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGG
* *** ** *
18418181 TTCTTGCCCGTTCGAACATTTCAAACTTTTACGAGTTCTTTTATATTTTTGGTTCCTTAAAGTTT
260 TTCTTGCCCGTTCGAACATTTCAAACTTTTACGAGTTCTTTTACAACATCAGTTCCTTAAAGTAT
* * * *
18418246 TAAAGACGATCCATTCCTTTGACAAAATTTTGGAACATTACATGCTCGAGAAATCACATCATTTC
325 TAAAGACGACCCATTCATTCGACAAAATTTTCGAACATTACATGCTCGAGAAATCACATCATTTC
* * *
18418311 GTCTAAATAGTTTTTTATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAG
390 GTCTAAATAGTTTGTCATTTTATAAACAACATTTAGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
18418376 AATCATTTCTCTCTTGGTTATTGTCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTAT
455 AATCATTTCACTCTTGGTTATGGACAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTCAA
*
18418441 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGGT
520 AACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGGT
18418506 C
585 C
*
18418507 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTT-GCCAAACTTCCGAA
1 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCAAACTTCCGAA
** * * *
18418571 CTTGT-CAAATTTTATGAGTTCTTTTATAGA-TCTGATTCCTAAAAGTATTCAAGATGATCAATT
65 CTTGTCCAAATTTTAAAAGTTCTTTTATA-ACTCCGATTCCTAAAAGTATGCAAGACGATCAATT
* * ** *
18418634 CCTTTGAGAAATTTCCCAAACATTCCATGCTTGGGAAATCAAATCATTTGGTCTAAATAGTTTTT
129 CCTTCGAGAAATATCCCAAACATTCCATGCTTGGGAAATCAAATCATTTGCCCTAAATAGTTTGT
* ** * *
18418699 CA-TTTTGAACAACTTTTGGTCTTTGA-ATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTT
194 CATTTTTAAACAACTTTCAGTCTTTGATA-TAAAAACTTATTAACGTGAGAATTGTTTCTCTCTT
* * *
18418762 GGTTCTTGGCCGAACTTTTGAAC-TTGTCCAAA-TTTTATGAGTT-TATTTACAACATCAGTTCC
258 GGTTCTT-GCC---CGTTCGAACATT-T-CAAACTTTTACGAGTTCT-TTTACAACATCAGTTCC
* * * *
18418824 TTAAAGTATTCAAGATC-ACCCATTCATTCGAGC-AATTTTTCGAACATTCCATGCTCGGGAAAT
316 TTAAAGTATTAAAGA-CGACCCATTCATTCGA-CAAAATTTTCGAACATTACATGCTCGAGAAAT
** * * *
18418887 TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTT
379 CACATCATTTCGTCTAAATAGTTTGTCATTTTATAAACAACATTTAGTCTTTGAATTAAAAACTT
** *
18418952 ATTTACGTGAGAATTGTTTCACTCTTGGCTCTA-GGAC-GAAC-TTCTGAACTTGT-AAGACTTT
444 ATTTACGTGAGAATCATTTCACTCTTGG-T-TATGGACAGAACTTTC-GAACTTCTCAA-ACTTT
* *
18419013 TACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCG
505 TAAGAGTTCTTTCAAAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCG
18419070 AGCAATTTTC
Statistics
Matches: 480, Mismatches: 67, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
582 1 0.00
583 60 0.12
584 3 0.01
585 103 0.21
586 70 0.15
587 232 0.48
588 9 0.02
589 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (585 bp):
TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAAC
TTGTCCAAATTTTAAAAGTTCTTTTATAACTCCGATTCCTAAAAGTATGCAAGACGATCAATTCC
TTCGAGAAATATCCCAAACATTCCATGCTTGGGAAATCAAATCATTTGCCCTAAATAGTTTGTCA
TTTTTAAACAACTTTCAGTCTTTGATATAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGT
TCTTGCCCGTTCGAACATTTCAAACTTTTACGAGTTCTTTTACAACATCAGTTCCTTAAAGTATT
AAAGACGACCCATTCATTCGACAAAATTTTCGAACATTACATGCTCGAGAAATCACATCATTTCG
TCTAAATAGTTTGTCATTTTATAAACAACATTTAGTCTTTGAATTAAAAACTTATTTACGTGAGA
ATCATTTCACTCTTGGTTATGGACAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTCAAA
ACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGGTC
Found at i:18419262 original size:216 final size:213
Alignment explanation
Indices: 18418482--18419285 Score: 882
Period size: 216 Copynumber: 3.7 Consensus size: 213
18418472 CCATTCCTTC
* * *
18418482 GTCAATTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTT
1 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * * *
18418547 TTGGTTCCTTGCCAAACTTCCGAACTTGTCAAATTTTATGAGTTCTTTTATAGATCTGATTCCTA
66 TTGGTT-CTTGCCAAACTTTCGAACTTGTAAAATTTTACGAGTTCTTTTAAACATC-GGTTCCTT
* * * * * * * * *
18418612 AAAGTATTCAAGATGATCAATTCCTTTGAGAAATTTCCCAAACATTCCATGCTTGGGAAATCAAA
129 AAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCACA
18418677 TCATTTGGTCTAAATAGTTT
194 TCATTTGGTCTAAATAGTTT
* *
18418697 TTCATTTTG--AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC
1 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * *
18418760 TTGGTTCTTGGCCGAACTTTTGAACTTGTCCAAATTTTATGAGTT-TATTTACAACATCAGTTCC
66 TTGGTTCTT-GCCAAACTTTCGAACTTGT-AAAATTTTACGAGTTCT-TTTA-AACATCGGTTCC
* * * * *
18418824 TTAAAGTATTCAAGATC-ACCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATT
127 TTAAAGCATTCAAGA-CGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATC
*
18418888 GCATCATTTGGTCTAAATAGTTT
191 ACATCATTTGGTCTAAATAGTTT
* *
18418911 GTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTC
1 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * * * *
18418976 TTGGCTCTAGGACGAAC-TTCTGAACTTGTAAGACTTTTACGAGTTCTTTCAAAACTTTGGTTCC
66 TTGGTTCT-TGCCAAACTTTC-GAACTTGTAA-AATTTTACGAGTTCTTT-TAAACATCGGTTCC
* * *
18419040 TTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACAGTCAATGCTCGAGAAATCA
127 TTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCA
* *
18419105 CAT-ATTTTGATCTAAATAGTAT
192 CATCA-TTTGGTCTAAATAGTTT
* * * * * *
18419127 GTAATTTTGTAAACAACTTTTGGTATTTGAATTGAAAACTTATTTACATGAGTATTATTTCTCTC
1 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * *
18419192 TTGGTTCTTGTCTAAACTTTCGAACTTCTAAAACTTTTACAAGTTCTTTTATTACTTCGGTTCCT
66 TTGGTTCTTG-CCAAACTTTCGAACTTGTAAAA-TTTTACGAGTTCTTTTA-AACATCGGTTCCT
* * *
18419257 TAAAGCTTTTAGGACGATCCATTCCTTCG
128 TAAAGCATTCAAGACGATCCATTCCTTCG
18419286 TCAATTTGTA
Statistics
Matches: 497, Mismatches: 74, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
212 3 0.01
213 74 0.15
214 103 0.21
215 19 0.04
216 293 0.59
217 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (213 bp):
GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
TTGGTTCTTGCCAAACTTTCGAACTTGTAAAATTTTACGAGTTCTTTTAAACATCGGTTCCTTAA
AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCACATC
ATTTGGTCTAAATAGTTT
Found at i:18419431 original size:158 final size:158
Alignment explanation
Indices: 18419132--18419442 Score: 382
Period size: 158 Copynumber: 2.0 Consensus size: 158
18419122 AGTATGTAAT
** * ** *
18419132 TTTGTAAACAACTTTTGGTATTTGAATTGAAAACTTATTTACATGAGTATTATTTCTCTCTTGGT
1 TTTGTAAACAACTTTTGAAATTTGAATTAAAAACTTATTTACATGACAATTATTTCTCTCCTGGT
* * * *
18419197 TCTTGTCTAAACTTTCGAACTTCTAAAACTTTTACAAGTTCTTTTATTACTTCGGTTCCTTAAAG
66 TCTTGTCCAAACTTTCGAACTTCTAAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTAAAAG
* *
18419262 CTTTTAGGACGATCCATTCCTTCGTCAA
131 CTTTCAAGACGATCCATTCCTTCGTCAA
*
18419290 TTTGTAAACAACTTTTGAAATTTGAATTAAAAACTTATTTA-AGTGACAATTGTTTCTCTCCTGG
1 TTTGTAAACAACTTTTGAAATTTGAATTAAAAACTTATTTACA-TGACAATTATTTCTCTCCTGG
* *
18419354 TTCCTTG-CCAAAC-TTCTGAACTTGTTAAAA-TTTTACAAGTTCTTTTATAAC-TCTGATTGCT
65 TT-CTTGTCCAAACTTTC-GAACTT-CTAAAACTTTTACAAGTTCTTTTATAACTTC-GATTCCT
*
18419415 AAAAG-TATTCAAGACGATCTATTCCTTC
126 AAAAGCT-TTCAAGACGATCCATTCCTTC
18419443 AAGCAATTTC
Statistics
Matches: 131, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
157 7 0.05
158 115 0.88
159 9 0.07
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (158 bp):
TTTGTAAACAACTTTTGAAATTTGAATTAAAAACTTATTTACATGACAATTATTTCTCTCCTGGT
TCTTGTCCAAACTTTCGAACTTCTAAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTAAAAG
CTTTCAAGACGATCCATTCCTTCGTCAA
Found at i:18419692 original size:214 final size:216
Alignment explanation
Indices: 18419294--18419827 Score: 598
Period size: 214 Copynumber: 2.5 Consensus size: 216
18419284 CGTCAATTTG
*** * * *
18419294 TAAACAACTTTTGAAATTTGAATTAAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCCT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTT-CT
* * * * * *
18419359 TG-CCAAAC-TTCTGAACTTGTTAAAATTTTACAAGTTCTTTTATAACTCTGATTGCTAAAAGTA
65 TGTCCGAACTTTC-AAACTTGTCAAAATTTTACAAGTTCTTTTACAACTCTGATTCCTAAAAGCA
* * * *
18419422 TTCAAGACGATCTATTCCTTCAAGCAATTTCATGAACATTCCATACTTGGGAAATCAAATCA-TT
129 TTCAAGACGATCTATTCCTTCAAGCAATTTCACGAACAGTCCATACTCGAGAAATCAAAT-ATTT
* **
18419486 TGGTCTAAATAGTTT-TTCTTTT-
193 TGATCTAAATAGTTTGTAATTTTA
* *
18419508 TGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTT
* ** * *
18419573 GTCCGAACTTTCAAACTTGTCCAAATTTTATGAGTTCTTTTACAACATC-GGTTCCTTAAAGCAT
66 GTCCGAACTTTCAAACTTGTCAAAATTTTACAAGTTCTTTTACAAC-TCTGATTCCTAAAAGCAT
** * *
18419637 TCAAGACGATGC-ATTCCTTTGAGCAATTTTC-CGAACAGTCCATGCTCGAGAAATCACATATTT
130 TCAAGACGAT-CTATTCCTTCAAGCAA-TTTCACGAACAGTCCATACTCGAGAAATCAAATATTT
18419700 TGATCTAAATAGTTTGTAATTTTA
193 TGATCTAAATAGTTTGTAATTTTA
* *** *
18419724 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGTGTATTATTTCTCTCTTGGTTCTT
1 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTT
* * * **
18419789 GTCTGAACTTCCAAACTTTTCAATCTTTTACAAGTTCTT
66 GTCCGAACTTTCAAACTTGTCAAAATTTTACAAGTTCTT
18419828 ACTTAGTGAT
Statistics
Matches: 267, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
213 5 0.02
214 158 0.59
215 15 0.06
216 89 0.33
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (216 bp):
TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTT
GTCCGAACTTTCAAACTTGTCAAAATTTTACAAGTTCTTTTACAACTCTGATTCCTAAAAGCATT
CAAGACGATCTATTCCTTCAAGCAATTTCACGAACAGTCCATACTCGAGAAATCAAATATTTTGA
TCTAAATAGTTTGTAATTTTA
Found at i:18419799 original size:804 final size:797
Alignment explanation
Indices: 18417813--18419827 Score: 2549
Period size: 804 Copynumber: 2.5 Consensus size: 797
18417803 TGGTTCTTTG
* * * * **
18417813 AAGTATTTAAGACGATCCAA-TCCTTCGAGCAATTTCTGAACATTCCATGCTCGGAAAAACGCAT
1 AAGTATTCAAGACGAT-CAATTCCTTCGAGCAATTTCTGAACATTCCATGCTTGGGAAATCAAAT
** * * * **
18417877 CATTTGGTCTAAATAGTTTGTAATTTTGTAAAT-AGCTTTTTGAATTTGAATTAAAAACTTATTT
65 CATTTGGTCTAAATAGTTT-TTCTTTT-T-GATCAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * **
18417941 ACTTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCCAAATTTTAAAAGTT
127 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCCAAATTTTATGAGTT
* * * * *
18418006 CTTTTATAAC-TCCGATTCC-TATAAGTATGCAAGACGATCCATTCCTTCGAGC-AGTATCCTGA
192 CTTTTACAACAT-CGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC-GA
* * * ** * *
18418068 ATATTCCATGCTTTGGAAATCACATCCTTTGCCCTAAATAGTTTGTCATTTTTTAAACAACTTTC
254 ACATTCCATGC-TCGGAAATCACAT-ATTTGATCTAAATAGTTTGTCATTTTATAAACAACTTTT
* * * *
18418133 AGTCTTTG-ATATAAAACCTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTG-C--CCGTTC
317 GGTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAAC-TTC
* * ** **
18418194 GAACATTTCAAACTTTTACGAGTTCTTTTATATTTTTGGTTCCTTAAAGTTTTAAAGACGATCCA
380 GAACATTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTAAAGACGATCCA
* * * *
18418259 TTCCTTTGACAAAATTTTGGAACATTACATGCTCGAGAAATCACATCATTTCGTCTAAATAGTTT
445 TTCCTTCGAC-AAATTTTCGAACATCACATGCTCGAGAAATCACATCATTTCGTCTAAATAGTAT
* * * *
18418324 TTTATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTC
509 GTAATTTTATAAACAACTTTTAGTATTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTC
*
18418389 TTGGTTATTGTCAGAACTTTCGAACTTCTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCT
574 TTGGTTATTGTCAGAACTTTCGAACTTCTAAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCT
***
18418454 TAAAGTATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGGTCTTTGAATTAAAA
639 TAAAGTATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGAAATTTGAATTAAAA
* * ** *
18418519 ACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTTGCCAAACTTCCGAACTTGTCAAATTTT
704 ACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCCTTGCCAAACTTCCGAACTTGTAAAATTTT
**
18418584 ATGAGTTCTTTTATAGATCTGATTCCTAA
769 ACAAGTTCTTTTATAGATCTGATTCCTAA
* * * **
18418613 AAGTATTCAAGATGATCAATTCCTTTGAGAAATTTCCCAAACATTCCATGCTTGGGAAATCAAAT
1 AAGTATTCAAGACGATCAATTCCTTCGAGCAATTT-CTGAACATTCCATGCTTGGGAAATCAAAT
* * *
18418678 CATTTGGTCTAAATAGTTTTTCATTTTGAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG
65 CATTTGGTCTAAATAGTTTTTCTTTTTGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
*
18418743 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTTGAACTTGTCCAAATTTTATGAGTT-TA
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCCAAATTTTATGAGTTCT-
* * * *
18418807 TTTACAACATCAGTTCCTTAAAGTATTCAAGATC-ACCCATTCATTCGAGCAATTTTTCGAACAT
194 TTTACAACATCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTCCGAACAT
** * * *
18418871 TCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTC
258 TCCATGCTC-GGAAATCACAT-ATTTGATCTAAATAGTTTGTCATTTTATAAACAACTTTTGGTC
* * *
18418936 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGCTCTAGGACGAACTTCTGAAC
321 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGACGAACTTC-GAAC
*
18419001 -TTGT-AAGACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTCAAGACGATCCATT
384 ATT-TCAA-ACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTAAAGACGATCCATT
*
18419064 CCTTCGAGC-AATTTTCCGAACAGTCA-ATGCTCGAGAAATCACAT-ATTTTGATCTAAATAGTA
447 CCTTCGA-CAAATTTT-CGAACA-TCACATGCTCGAGAAATCACATCATTTCG-TCTAAATAGTA
* * * * *
18419126 TGTAATTTTGTAAACAACTTTTGGTATTTGAATTGAAAACTTATTTACATGAGTATTATTTCTCT
508 TGTAATTTTATAAACAACTTTTAGTATTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCT
* *
18419191 CTTGGTTCTTGTCTA-AACTTTCGAACTTCTAAAACTTTTACA-AGTTCTTTTATTACTTCGGTT
573 CTTGGTTATTGTC-AGAACTTTCGAACTTCTAAAACTTTTA-AGAGTTCTTTTATAACTTCGGTT
* * *
18419254 CCTTAAAGCT-TTTAGGACGATCCATTCCTTCGTCAATTTGTAAACAACTTTTGAAATTTGAATT
636 CCTTAAAG-TATTCAAGACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGAAATTTGAATT
*
18419318 AAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCCTTGCCAAACTTCTGAACTTGTTAAA
700 AAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCCTTGCCAAACTTCCGAACTTG-TAAA
*
18419383 ATTTTACAAGTTCTTTTATA-ACTCTGATTGCTAA
764 ATTTTACAAGTTCTTTTATAGA-TCTGATTCCTAA
* * *
18419417 AAGTATTCAAGACGATCTATTCCTTCAAGCAATTTCATGAACATTCCATACTTGGGAAATCAAAT
1 AAGTATTCAAGACGATCAATTCCTTCGAGCAATTTC-TGAACATTCCATGCTTGGGAAATCAAAT
18419482 CATTTGGTCTAAATAGTTTTTCTTTTTGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
65 CATTTGGTCTAAATAGTTTTTCTTTTTGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
18419547 TGAAAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCCAAATTTTATGAGTTCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCCAAATTTTATGAGTTCTT
* * * *
18419612 TTACAACATCGGTTCCTTAAAGCATTCAAGACGATGCATTCCTTTGAGCAATTTTCCGAACAGTC
195 TTACAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTC
*
18419677 CATGCTCGAGAAATCACATATTTTGATCTAAATAGTTTGTAATTTTATAAACAACTTTTGGTCTT
260 CATGCTCG-GAAATCACATA-TTTGATCTAAATAGTTTGTCATTTTATAAACAACTTTTGGTCTT
* * * * * * *
18419742 TGAATTAAAAACTTATTTACATGTGTATTATTTCTCTCTTGGTTCTTGTCTGAACTTCCAAACTT
323 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAC-GAACTT-CGAACAT
* *
18419807 TTCAATCTTTTACAAGTTCTT
386 TTCAAACTTTTACGAGTTCTT
18419828 ACTTAGTGAT
Statistics
Matches: 1048, Mismatches: 132, Indels: 66
0.84 0.11 0.05
Matches are distributed among these distances:
798 3 0.00
799 225 0.21
800 42 0.04
801 42 0.04
802 18 0.02
803 324 0.31
804 388 0.37
805 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (797 bp):
AAGTATTCAAGACGATCAATTCCTTCGAGCAATTTCTGAACATTCCATGCTTGGGAAATCAAATC
ATTTGGTCTAAATAGTTTTTCTTTTTGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCCAAATTTTATGAGTTCTTT
TACAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCC
ATGCTCGGAAATCACATATTTGATCTAAATAGTTTGTCATTTTATAAACAACTTTTGGTCTTTGA
ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCGAACATTTCAA
ACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTAAAGACGATCCATTCCTTCGACA
AATTTTCGAACATCACATGCTCGAGAAATCACATCATTTCGTCTAAATAGTATGTAATTTTATAA
ACAACTTTTAGTATTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGTTATTGTC
AGAACTTTCGAACTTCTAAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
GACGATCCATTCCTTCGTCAATTTGTAAAAAACTTTTGAAATTTGAATTAAAAACTTATTTAAGT
GACAATTGTTTCTCTCCTGGTTCCTTGCCAAACTTCCGAACTTGTAAAATTTTACAAGTTCTTTT
ATAGATCTGATTCCTAA
Found at i:18419824 original size:588 final size:590
Alignment explanation
Indices: 18418706--18419827 Score: 1598
Period size: 588 Copynumber: 1.9 Consensus size: 590
18418696 TTTCATTTTG
*** * * *
18418706 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGG
1 AACAACTTTTGAAATTTGAATTAAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCTTGG
* * * ** *
18418771 CCGAACTTTTGAACTTGTCCAAATTTTATGAGTTTATTTACAACATCAGTTCCTTAAAGTATTCA
66 CCAAACTTCTGAACTTGTCAAAATTTTACAAGTTTATTTACAACATCAGTTCCTAAAAGTATTCA
* * * ***
18418836 AGATCACCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTC
131 AGATCACCCATTCATTCAAGCAATTTATCGAACATTCCATACTCGGGAAATCAAATCATTTGGTC
*
18418901 TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
196 TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAT
*
18418966 TGTTTCACTCTTGGCTCTAGGACGAACTTCTGAACTTGTAAGACTTTTACGAGTTCTTTCAAAAC
261 TGTTTCACTCTTGGCTCTAGGACGAACTTCTAAACTTGTAAGACTTTTACGAGTTCTTTCAAAAC
* *
18419031 TTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACAGTCAATGCTC
326 ATCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACAGTCAATGCTC
* *
18419096 GAGAAATCACATATTTTGATCTAAATAGTATGTAATTTTGTAAACAACTTTTGGTATTTGAATTG
391 GAGAAATCACATATTTTGATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTATTTGAATTA
* *
18419161 AAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTTCGAACTTCTAAAAC
456 AAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTCCAAACTTCTAAAAC
18419226 TTTTACAAGTTCTTTTATTACTTCGGTTCCTTAAAGCTTTTAGGACGATCCATTCCTTCGTCAAT
521 TTTTACAAGTTCTTTTATTACTTCGGTTCCTTAAAGCTTTTAGGACGATCCATTCCTTCGTCAAT
18419291 TTGTA
586 TTGTA
18419296 AACAACTTTTGAAATTTGAATTAAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCCTT-
1 AACAACTTTTGAAATTTGAATTAAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTT-CTTG
* * * *
18419360 GCCAAACTTCTGAACTTGTTAAAATTTTACAAGTTCT-TTTATAAC-TCTGATTGCTAAAAGTAT
65 GCCAAACTTCTGAACTTGTCAAAATTTTACAAGTT-TATTTACAACATCAG-TTCCTAAAAGTAT
* * * *
18419423 TCAAGA-CGATCTATTCCTTCAAGCAATTTCAT-GAACATTCCATACTTGGGAAATCAAATCATT
128 TCAAGATC-ACCCATTCATTCAAGCAATTT-ATCGAACATTCCATACTCGGGAAATCAAATCATT
* * * *
18419486 TGGTCTAAATAGTTTTTC-TTTT-TGATCAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
191 TGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * ** *
18419549 AAAATTGTTTCTCTCTTGGTTCTTGTCCGAACTT-TCAAACTTGTCCAA-A-TTTTATGAGTTCT
256 AAAATTGTTTCACTCTTGGCTCTAGGACGAACTTCT-AAACTTGT--AAGACTTTTACGAGTTCT
* * * *
18419611 TTTACAACATCGGTTCCTTAAAGCATTCAAGACGATGCATTCCTTTGAGCAATTTTCCGAACAGT
318 TTCAAAACATCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACAGT
* * *
18419676 CCATGCTCGAGAAATCACATATTTTGATCTAAATAGTTTGTAATTTTATAAACAACTTTTGGTCT
383 CAATGCTCGAGAAATCACATATTTTGATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTAT
* *
18419741 TTGAATTAAAAACTTATTTACATGTGTATTATTTCTCTCTTGGTTCTTGTCTGAACTTCCAAACT
448 TTGAATTAAAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTCCAAACT
* * *
18419806 TTTCAATCTTTTACAAGTTCTT
513 TCTAAAACTTTTACAAGTTCTT
18419828 ACTTAGTGAT
Statistics
Matches: 468, Mismatches: 56, Indels: 18
0.86 0.10 0.03
Matches are distributed among these distances:
587 1 0.00
588 284 0.61
589 9 0.02
590 169 0.36
591 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (590 bp):
AACAACTTTTGAAATTTGAATTAAAAACTTATTTAAGTGACAATTGTTTCTCTCCTGGTTCTTGG
CCAAACTTCTGAACTTGTCAAAATTTTACAAGTTTATTTACAACATCAGTTCCTAAAAGTATTCA
AGATCACCCATTCATTCAAGCAATTTATCGAACATTCCATACTCGGGAAATCAAATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAT
TGTTTCACTCTTGGCTCTAGGACGAACTTCTAAACTTGTAAGACTTTTACGAGTTCTTTCAAAAC
ATCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACAGTCAATGCTC
GAGAAATCACATATTTTGATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTATTTGAATTA
AAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTCCAAACTTCTAAAAC
TTTTACAAGTTCTTTTATTACTTCGGTTCCTTAAAGCTTTTAGGACGATCCATTCCTTCGTCAAT
TTGTA
Found at i:18421247 original size:701 final size:695
Alignment explanation
Indices: 18419856--18421247 Score: 2118
Period size: 701 Copynumber: 2.0 Consensus size: 695
18419846 TAATTTTTTC
* * * *
18419856 TTTAATTTTATCCTGTTTTTGCTATTAATGTCGCCACAACTAGTGTTCAGTATTGCATCTAAAGA
1 TTTAATTTTATCCTATTTTTGATATTAATGTCGCCACAACTAGTGTTCAGTATCGCATCCAAAGA
* * * * *
18419921 TGTTAGTGCAGGAGTCTGTCCGGAAAGATCAATGCATGAAGGTATCCAGGGTTGTCGCCGCAAAA
66 TGTCAGTGCAGGAGTCTGTCCAGAAAGATCAACGCATGAAGGTATACAGGGTTGTCGCCACAAAA
* *
18419986 TAGAATCTAAATTTGCACCTAAAAATGTCACCACAACCGACAACTGTCTGATGAACACCAGATAT
131 TAGAATCTAAATTTGCACCCAAAAATGTCACCACAACAGACAACTGTCTGATGAACACCAGATAT
*
18420051 GCATGAGTGTACAACTAGTATAACCAACTTGTACAGCTAGAGGAAGTTGGATCTGAAAGAAAGGA
196 GCATGAGTGTACAACTAGTATAACCAACTTGTACAGCAAGAGGAAGTTGGATCTGAAAGAAAGGA
*
18420116 CACCTGTACATGGCAATGATTGATAAATACTGATGAGGGAGGATCTTCTTAGGGTATCATCTTCC
261 CACCTGTACATGGAAATGATTGATAAATACTGATGAGGGAGGATCTTCTTAGGGTATCATCTTCC
* *
18420181 AGATTTGTGACGCGTCAATTCTCTTCTCTTCAACATTTTCTTAAGCTTGCTTTCATGGAAACTTA
326 AGATTTGTGACGCGTCAATTCTCTTCTATTCAACATTTTCTTAAGCTTGCTTCCATGGAAACTTA
* * * *
18420246 ACTTCATTGAGGGTGATTGACTATGACGAGAAGGAAAATCTACTCCAGACAAGGAGCACGCTTAA
391 ACTTCATTGAGGGCGACTGACTATGACGAAAAGGAAAACCTACTCCAGACAAGGAGCACGCTTAA
*
18420311 TTGCGCGCAAAAGGAGTGTAAGGGAATGGTTCTAGTAGACTAGGAATAGGATGCTTCAATTCATT
456 TTGCGCGCAAAAGGAGTGTAAGGGAATGGTTCTAGTAGACTAGGAATAGGATGCATCAATTCATT
** * * * *
18420376 CTTTTATTCTCTCTTCAAACATTGATGAATTTTGATTAATTGAATTTGTATGGAAGTATAGTTTA
521 CTTTTATTCTCTCTTCAAACACAGATGAATTTTGATTAATTCAATTAGCATGGAAGTACAGTTTA
* * *
18420441 ATTTCATATCAAGTTTGATATCTATTGAATCTTTCCTTCATTGTTTATCTTTGGATTTAGTTGCT
586 ATTTCAGATCAAGCTTGATATCTATTGAATCTTTCCTTAATTGTTTATCTTTGGATTTAGTTGCT
* * *
18420506 TGACAATGAAAGTGTAATTGCGGTCACTGTCACTGGAAAGTACAA
651 TGACAACGAAAGTGCAATTACGGTCACTGTCACTGGAAAGTACAA
* * *
18420551 TTTAATTTTAGATCCTATTTTTTATATTAATGTCTCCACAATTAGTGTTCAGTATCGCATCCAAA
1 TTTAATTTT--ATCCTATTTTTGATATTAATGTCGCCACAACTAGTGTTCAGTATCGCATCCAAA
* * * *
18420616 GATGTCAGTGTAGGAGTCTGTCCAGAAAGATCAACGTATGAAGGTATACTGGGTTGTCGCCATAA
64 GATGTCAGTGCAGGAGTCTGTCCAGAAAGATCAACGCATGAAGGTATACAGGGTTGTCGCCACAA
** * ** *
18420681 AATAGAATCTAAATTTGTGCCCAGAAATGTCGTCACAACAGACAACTGTCTTATGAACACACCAG
129 AATAGAATCTAAATTTGCACCCAAAAATGTCACCACAACAGACAACTGTCTGATG-A-ACACCAG
* * * * *
18420746 TTCTGCATGAGTGTACAGCTGGTATAACCAACTTGTATAGCAAGAGGAAGTTGGATCTGAAAGAA
192 ATATGCATGAGTGTACAACTAGTATAACCAACTTGTACAGCAAGAGGAAGTTGGATCTGAAAGAA
*
18420811 AGGACACCTGTACATGGAAATGGTTGATAAATACTGATGAGGGAGGATCTTCTTAGGGTATCATC
257 AGGACACCTGTACATGGAAATGATTGATAAATACTGATGAGGGAGGATCTTCTTAGGGTATCATC
* * * *
18420876 TTCCATATTTGTGACGCGTCAATTCTCTTCTATTCAGCATTTTCTTAAGCTTGCTTCCATGGCAG
322 TTCCAGATTTGTGACGCGTCAATTCTCTTCTATTCAACATTTTCTTAAGCTTGCTTCCATGGAAA
* * * * *
18420941 CTTAACTTCATTGAGGGCGACCTGATTTTGATGAAAAGGAAAACCTACTCCTGACAAGGAGCATG
387 CTTAACTTCATTGAGGGCGA-CTGACTATGACGAAAAGGAAAACCTACTCCAGACAAGGAGCACG
* * *
18421006 CTTAATTGCGATGCAATAGGAGTGTAAGGGAATGGTTCTGGTAGACTAGGAATAGGATGCATCAA
451 CTTAATTGCG-CGCAAAAGGAGTGTAAGGGAATGGTTCTAGTAGACTAGGAATAGGATGCATCAA
* *
18421071 TTCATTCTTTTATTCTCTCTTCAAACGCAGATGGATTTTGATTAATTCAATTAGCATGGAAGTAC
515 TTCATTCTTTTATTCTCTCTTCAAACACAGATGAATTTTGATTAATTCAATTAGCATGGAAGTAC
*
18421136 AGTTTAATTTTAGATCAAGCTTGATATCTATTGAATCTTTCCTTAATTGTTTATCTTTGGATTTA
580 AGTTTAATTTCAGATCAAGCTTGATATCTATTGAATCTTTCCTTAATTGTTTATCTTTGGATTTA
* *
18421201 GTTGCTTGACCACGAAAGTGCAATTACGGTCACTGTCATTGGAAAGT
645 GTTGCTTGACAACGAAAGTGCAATTACGGTCACTGTCACTGGAAAGT
18421248 GCAACGACAT
Statistics
Matches: 623, Mismatches: 68, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
695 9 0.01
697 150 0.24
698 1 0.00
699 207 0.33
700 46 0.07
701 210 0.34
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (695 bp):
TTTAATTTTATCCTATTTTTGATATTAATGTCGCCACAACTAGTGTTCAGTATCGCATCCAAAGA
TGTCAGTGCAGGAGTCTGTCCAGAAAGATCAACGCATGAAGGTATACAGGGTTGTCGCCACAAAA
TAGAATCTAAATTTGCACCCAAAAATGTCACCACAACAGACAACTGTCTGATGAACACCAGATAT
GCATGAGTGTACAACTAGTATAACCAACTTGTACAGCAAGAGGAAGTTGGATCTGAAAGAAAGGA
CACCTGTACATGGAAATGATTGATAAATACTGATGAGGGAGGATCTTCTTAGGGTATCATCTTCC
AGATTTGTGACGCGTCAATTCTCTTCTATTCAACATTTTCTTAAGCTTGCTTCCATGGAAACTTA
ACTTCATTGAGGGCGACTGACTATGACGAAAAGGAAAACCTACTCCAGACAAGGAGCACGCTTAA
TTGCGCGCAAAAGGAGTGTAAGGGAATGGTTCTAGTAGACTAGGAATAGGATGCATCAATTCATT
CTTTTATTCTCTCTTCAAACACAGATGAATTTTGATTAATTCAATTAGCATGGAAGTACAGTTTA
ATTTCAGATCAAGCTTGATATCTATTGAATCTTTCCTTAATTGTTTATCTTTGGATTTAGTTGCT
TGACAACGAAAGTGCAATTACGGTCACTGTCACTGGAAAGTACAA
Found at i:18422071 original size:13 final size:14
Alignment explanation
Indices: 18422042--18422075 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
18422032 AGTCGAAAAG
18422042 AAAAAAATTGATTGA
1 AAAAAAATTGA-TGA
18422057 AAAAAAATTGA-GA
1 AAAAAAATTGATGA
18422070 AAAAAA
1 AAAAAA
18422076 GAAGAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18
Consensus pattern (14 bp):
AAAAAAATTGATGA
Found at i:18423032 original size:3 final size:3
Alignment explanation
Indices: 18423024--18423073 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
18423014 AATATTCAGG
* * * * *
18423024 ATT ATT ATT ATT GTT GTT GTT GTT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18423072 AT
1 AT
18423074 ATTTAATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:18423162 original size:23 final size:25
Alignment explanation
Indices: 18423136--18423181 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18423126 CCAATTAAGG
18423136 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
18423159 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
18423182 TGTATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:18424585 original size:205 final size:206
Alignment explanation
Indices: 18424173--18424663 Score: 601
Period size: 205 Copynumber: 2.3 Consensus size: 206
18424163 CTGCATCACA
* * * * * *
18424173 GAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTGATTTTGTAAATAGCTT
1 GAACATTCCATGCTCGGGAAATCGAATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
18424238 TTGGTCTTTGAATTAAAAATATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTT
66 TT-G-----G--TT-CAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTT
* ** * * *
18424303 CCGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTCTAAATCCTGAAATTATTGAAGATGATC
121 CCGAACTTGTCAAAATTTTACAAGTTCTTTCATAACTCTAAATCCTGAAAGCATTCAAGACGACC
* *
18424368 CATTCCTTTGAGAAATTTCTT-
186 CAATCATTTGAGAAATTT-TTC
* *
18424389 GAACATTCCATGCTTGGGAAATC-AATCATTTGGTCAAAATAGTTTGTCATTTTTTAAACAACTT
1 GAACATTCCATGCTCGGGAAATCGAATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTT
18424453 TTGGTTCAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGT
66 TTGGTTCAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGT
* *** *
18424518 CAAAATTTTACGAGTTCTTTCATAACT-TCGGTTCCTTAAAGCATTCAAGACGACCCAATCATTT
131 CAAAATTTTACAAGTTCTTTCATAACTCT-AAATCCTGAAAGCATTCAAGACGACCCAATCATTT
18424582 GAGAAATTTTTC
195 GAGAAATTTTTC
* * *
18424594 GAACATTTCATGCTCGGGAAATCGCATTATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTT
1 GAACATTCCATGCTCGGGAAATCGAATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTT
18424659 TTGGT
66 TTGGT
18424664 CTTTGAATTA
Statistics
Matches: 242, Mismatches: 30, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
204 3 0.01
205 131 0.54
206 46 0.19
207 2 0.01
209 1 0.00
214 1 0.00
215 37 0.15
216 21 0.09
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (206 bp):
GAACATTCCATGCTCGGGAAATCGAATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTTCAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGT
CAAAATTTTACAAGTTCTTTCATAACTCTAAATCCTGAAAGCATTCAAGACGACCCAATCATTTG
AGAAATTTTTC
Found at i:18432075 original size:16 final size:15
Alignment explanation
Indices: 18432048--18432082 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
18432038 ATGAATTTAA
*
18432048 AATTAAATTAATTCT
1 AATTAAATTAATTAT
18432063 AATTAAATATAATTAT
1 AATTAAAT-TAATTAT
18432079 AATT
1 AATT
18432083 TTCTAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTAAATTAATTAT
Found at i:18433222 original size:19 final size:19
Alignment explanation
Indices: 18433200--18433243 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
18433190 TTTGTTTCTA
18433200 ATTTTTAATAAAATTAAAT
1 ATTTTTAATAAAATTAAAT
* * *
18433219 ATTTCTATTAAAATTTAAT
1 ATTTTTAATAAAATTAAAT
18433238 ATTTTT
1 ATTTTT
18433244 TTATAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTAATAAAATTAAAT
Found at i:18434966 original size:341 final size:340
Alignment explanation
Indices: 18434344--18435024 Score: 1335
Period size: 341 Copynumber: 2.0 Consensus size: 340
18434334 CAACTATGAA
18434344 GCATGTCCTCAAGAACCTAAATCACCCTCTCGAATTGTCCATCGAACTGCAGATGATAAATTGAA
1 GCATGTCCTCAAGAACCTAAATCACCCTCTCGAATTGTCCATCGAACTGCAGATGATAAATTGAA
18434409 CTGACATGAAGCTTCAAACCCAAAGCTTCGTCTAGCGGCTTCCAAAATCTCAAAGTAAATCACGA
66 CTGACATGAAGCTTCAAACCCAAAGCTTCGTCTAGCGGCTTCCAAAATCTCAAAGTAAATCACGA
*
18434474 ATTTGGCCTATTATGATCAAAACCGGAACTCCATGAAGACGAATAATCTCTCAGATATAAAGCTC
131 ATTTGGCCTATTATGATCAAAACCGAAACTCCATGAAGACGAATAATCTCTCAGATATAAAGCTC
18434539 AGCTAAATGATGCAAGCTAAATGTTGTACGGACCAGACTTCAAAAATCTATCCACAATCATCGAG
196 AGCTAAATGATGCAAGCTAAATGTTGTACGGACCAGACTTCAAAAATCTATCCACAATCATCGAG
18434604 ATAGAATCCTTACGAGTCGGAGTCAAAGGCAAACCTGAAACAAAGTCCATCATAATTCGCTCCCA
261 ATAGAATCCTTACGAGTCGGAGTCAAAGGCAAACCTGAAACAAAGTCCATCATAATTCGCTCCCA
18434669 TTTCCACTCAGGGAT
326 TTTCCACTCAGGGAT
18434684 GCATGTCCTCAAGAACCTAAATCACCCTCTCGAATTGTCCATCGAACTGCAGATGATAAATTGAA
1 GCATGTCCTCAAGAACCTAAATCACCCTCTCGAATTGTCCATCGAACTGCAGATGATAAATTGAA
*
18434749 CTGACATGAAGCTTCAAACCCAAAGCTTCGTCTAGCGGCTTCCAAAATCTCAAAGTAAATCATGA
66 CTGACATGAAGCTTCAAACCCAAAGCTTCGTCTAGCGGCTTCCAAAATCTCAAAGTAAATCACGA
18434814 ATTTCGGCCTATTATGATCAAAACCGAAACTCCATGAAGACGAATAATCTCTCAGATATAAAGCT
131 ATTT-GGCCTATTATGATCAAAACCGAAACTCCATGAAGACGAATAATCTCTCAGATATAAAGCT
18434879 CAGCTAAATGATGCAAGCTAAATGTTGTACGGACCAGACTTCAAAAATCTATCCACAATCATCGA
195 CAGCTAAATGATGCAAGCTAAATGTTGTACGGACCAGACTTCAAAAATCTATCCACAATCATCGA
18434944 GATAGAATCCTTACGAGTCGGAGTCAAAGGCAAACCTGAAACAAAGTCCATCATAATTCGCTCCC
260 GATAGAATCCTTACGAGTCGGAGTCAAAGGCAAACCTGAAACAAAGTCCATCATAATTCGCTCCC
18435009 ATTTCCACTCAGGGAT
325 ATTTCCACTCAGGGAT
18435025 CTAATTAGGC
Statistics
Matches: 338, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
340 133 0.39
341 205 0.61
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (340 bp):
GCATGTCCTCAAGAACCTAAATCACCCTCTCGAATTGTCCATCGAACTGCAGATGATAAATTGAA
CTGACATGAAGCTTCAAACCCAAAGCTTCGTCTAGCGGCTTCCAAAATCTCAAAGTAAATCACGA
ATTTGGCCTATTATGATCAAAACCGAAACTCCATGAAGACGAATAATCTCTCAGATATAAAGCTC
AGCTAAATGATGCAAGCTAAATGTTGTACGGACCAGACTTCAAAAATCTATCCACAATCATCGAG
ATAGAATCCTTACGAGTCGGAGTCAAAGGCAAACCTGAAACAAAGTCCATCATAATTCGCTCCCA
TTTCCACTCAGGGAT
Found at i:18436360 original size:22 final size:22
Alignment explanation
Indices: 18436334--18436380 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
18436324 TCTGAATCCT
*
18436334 AAACCTTCAATTGGTAGTACCC
1 AAACCTTCAATTGGTAGAACCC
*
18436356 AAACCTTTAATTGGTAGAACCC
1 AAACCTTCAATTGGTAGAACCC
18436378 AAA
1 AAA
18436381 TCGAAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (22 bp):
AAACCTTCAATTGGTAGAACCC
Found at i:18448148 original size:21 final size:22
Alignment explanation
Indices: 18448110--18448184 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 22
18448100 CCTGCAACTT
* *
18448110 CTACCGAAACAAGC-ATACAAA
1 CTACCGATACATGCAATACAAA
18448131 CTACCGATACAT-CAATACACATAA
1 CTACCGATACATGCAAT--ACA-AA
* *
18448155 CTACTGATACATGCAATTC-AA
1 CTACCGATACATGCAATACAAA
18448176 CTACCGATA
1 CTACCGATA
18448185 TAACTCAAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
20 1 0.02
21 22 0.50
23 4 0.09
24 13 0.30
25 4 0.09
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.20
Consensus pattern (22 bp):
CTACCGATACATGCAATACAAA
Found at i:18452324 original size:15 final size:16
Alignment explanation
Indices: 18452304--18452333 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18452294 TGAATTTAAG
18452304 ATTAAAT-TAATTCTT
1 ATTAAATATAATTCTT
18452319 ATTAAATATAATTCT
1 ATTAAATATAATTCT
18452334 AAATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTAAATATAATTCTT
Found at i:18453399 original size:18 final size:20
Alignment explanation
Indices: 18453368--18453405 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
18453358 TTTTTGATGC
18453368 ATTTTATAATTTTTTACAAT
1 ATTTTATAATTTTTTACAAT
18453388 ATTTTAT-A-TTTTTACAAT
1 ATTTTATAATTTTTTACAAT
18453406 CTTTATAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTTATAATTTTTTACAAT
Found at i:18453410 original size:17 final size:19
Alignment explanation
Indices: 18453378--18453417 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
18453368 ATTTTATAAT
*
18453378 TTTTTACAATATTTTATA-
1 TTTTTACAATACTTTATAG
18453396 TTTTTACAAT-CTTTATAG
1 TTTTTACAATACTTTATAG
18453414 TTTT
1 TTTT
18453418 GTTTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTTACAATACTTTATAG
Found at i:18453417 original size:18 final size:18
Alignment explanation
Indices: 18453378--18453417 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
18453368 ATTTTATAAT
*
18453378 TTTTTACAATATTTTATA
1 TTTTTACAATACTTTATA
18453396 TTTTTACAAT-CTTTATA
1 TTTTTACAATACTTTATA
*
18453413 GTTTT
1 TTTTT
18453418 GTTTTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTTACAATACTTTATA
Found at i:18455019 original size:215 final size:215
Alignment explanation
Indices: 18454494--18458265 Score: 3670
Period size: 216 Copynumber: 17.7 Consensus size: 215
18454484 GTATTCTCTA
* ** ** * * *
18454494 GTCTTTGAATCAAAAACTTATTTACACGAGAAACGTTTCTCTCTTGGTTCTTGTCTGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * *
18454559 AACTTGTCAAACTTTTATGAATTCTTTAATAACTTGGGTTCCTTAAAGTATTCATGACGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * * * * *
18454624 TCCTTCAAACAATTTTTTGGAA-ATTCCAGGCACGAGAAATTGCATCTTTTAGTATAAATAGTTC
131 TCCTTCGAGCAA-TTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
*
18454688 GTCAATTTGTAAACAACTTCTT-
194 GTCATTTTGTAAACAACTT-TTG
* *
18454710 GTCTTTGAACTAAAAACTTA--T---T-----TTGTTTCTCTCTTGGTTCCTT-ACCGAAC-TAT
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTA-
* * * *
18454763 TGAACTTGACAAACTTTTACGATTTATTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCC
64 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
18454828 ATTCCTTCGAGCAATTTCTGAACATTCCATGCTTGGGAAATCGCATTATTTGGTCTAAATACTTT
129 ATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
18454893 CTCATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACTTTTG
* ** * * *
18454915 GTCTCTGAATTAAAAACTTATTTTTGTGAGAATTGTTCCTCTCTTGGCTCTTGGACGAACTTATG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * *
18454980 TACTTGTCAAACTTTTACGAGTTCTTTCAAAACTTCGGTTCCTTAAAGCATTCAAGATGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * **
18455045 TCCTTCGAGCAATTTTCCGAACATTCCATGCTCAGGACATCGCATCTTTTGGTCTAAATAGTTCA
131 TCCTTCGAGCAA-TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
18455110 TCAATTTGTAAACAACTTTTG
195 TCATTTTGTAAACAACTTTTG
* *
18455131 GTCTTGGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTTACTT-GCCGAAC-TAT
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTAT
* * * * *
18455194 CGAACTTGTCAAACTTTTGCGATTTCTTTTATAACTTTGATTTCTTAAAGTATTCAAGACGATCC
65 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
18455259 ATTCCTTTGAGCAATTTCTGAACATTCCTTGCTTGGGAAATCGCTTTATTTGGTCTAAATAGTTT
129 ATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
18455324 GTAATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACTTTTG
* * * *
18455346 GTCTTTCAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGCCGAA-TTTTC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * * * *
18455410 GAATTTGTCAAA-TTGTTATGAATTCTTTTATAACTTCGGTTCCATAAAATATTGAAGACGA-CC
65 GAACTTGTCAAACTT-TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
18455473 AATTCATTCGAGCAATTTTTGGAACATTCCATGCTCGGGAAATAGTATCATTCGGTTTAAATAGT
129 -ATTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* **
18455538 TTGTC-TTTTTTAATACAAAATTTG
192 TTGTCATTTTGTAA-ACAACTTTTG
* ** *
18455562 GTCTTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACTT-TC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * * *
18455626 GAACTTGT-AAAGCTTTTACGAGTTCTTTCAAAACTTCGATTCCTTATAGTATTAAAGACGATCC
65 GAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
18455690 A----TTC---C---TTC-GAACATTCCATGCTCAGGAAGTCGCATCATTTGGTCTTAATAGTTT
129 ATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* *
18455744 GTCATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACTTTTG
* * *
18455766 GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGATCTTGGCCGAAC-TATC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * * *
18455830 GAACTTGTCACAA-TGTTACGAGTTCTTTTATAACTTCAGTTCCATAAAATATTGAAGACGA-CC
65 GAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
18455893 AATTCATTCGAGCAATATTCCGAACATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGT
129 -ATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
*
18455958 TTGTCATTTTGTAAACAACATTTG
192 TTGTCATTTTGTAAACAACTTTTG
* ** ** **
18455982 GTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGATGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * * * **
18456047 AACTTGTAAAAATTTTACGAGTTCTTTCAAAACTTCGATTCCTTAAAGTATTAAAGAAAATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** * * * *
18456112 TCCTTCAAGCAATTATCCAAACATTCCATGATCGAGAAATCGCATCATTTTGTCTAAATTGTTTG
131 TCCTTCGAGCAATT-TCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
18456177 TCCTTATATAAACAACTTTTA
195 TCATTTTGTAAACAACTTTTG
* * * *
18456198 ATCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTAGTCCGAAC-TATC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* ** * * * * *
18456262 AAACTTGTTTAACTTTTATGAGTTCTTTTATAATTTTGGTTCCATAATGTATTCAAGACGATCCA
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * *
18456327 TTCCTTCGAACAATTTTTCGAACATTCCAGGTTCGGGAATTCGGATCATTTGGTCTAAATAGTTC
130 TTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
18456392 ATCAATTTGTAAACAAATTTTT
194 GTCATTTTGTAAACAACTTTTG
* * * * *
18456414 TTCTTTAAATTAAAAGCTTATTTACATGAGAATTATTTCTCTCTTGGTTCCTT-GCCGAAC-TAC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTA-
* * * * * * *
18456477 CGAACTTGTCAAACTTTTGC-AGTTTCTTTTATAACCTCGATTCCATAAAGTATTCAGGATG-TC
64 TGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-
* * *
18456540 CCATTCATTCGAGCAATCTTCTGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAG
127 CCATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
18456605 TTTGTCATTTTGTAAACAA-TATTTG
191 TTTGTCATTTTGTAAACAACT-TTTG
* * * * *
18456630 GTTTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGTCCGAACTTCTA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * ** * * * * *
18456695 AACTT-TCAATCTTTTACGAGTTCCTTTATATTTTTGGTTCCTCATAGTTTTCAAGACAATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** *
18456759 TCC-TCGGAGCAATTTTTCGAACATTCCATGCTCGGGAAGCCGCATCATTTTGTCTAAATAGTTT
131 TCCTTC-GAGCAATTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
18456823 TTCATTTTATAAACATCTTTTA
194 GTCATTTTGTAAACAACTTTTG
* ** * *
18456845 GTCTTTGAATTGAAAACTTATTTACGTGAGAATCATTTCCCTCTTGGTTCTTGTCCGAACTT-TC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * *
18456909 GAACTTGTCAAACTTTTACGAGTTCTTTTATGACTTCAGTTCCTTAAAGTAATCAA-AGCGATCC
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCC
** * * * * * *
18456973 ATTCCTTCGAATAATTTTTCAAACATTTCAGGCTCGGGAAATCACATCTTTTGGTCTAAATAGTT
129 ATTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
18457038 CT-TCAATTTGTAAACAACTTTTG
193 -TGTCATTTTGTAAACAACTTTTG
* *
18457061 GTCTTTG-ATATAAAAACTTATTTACATGTGAATTGTTTCTCTCTTGGTTCCCTT--CCGAAC--
1 GTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--CTTGGCCGAACTT
* ** * *
18457121 -T--AC----CGAACTTTTGTGATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATC
63 ATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* ** ** *
18457179 CATTCCTTCAAGCAATTTCCAAACATTCCATGCTCGGGAAATCATATCATTTAGTCTAAATAGTT
128 CATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
18457244 TATAATTTTGTAAATAGCTTTTG
193 TGTCATTTTGTAAACAACTTTTG
*
18457267 GTCTTTGAATT-AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-TC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * ** * ** *
18457330 AAACTTGTCAAAATTTTATGA-TTGCTTTTATAACTTCAATT-CTCTAAAGTGTTCAAGTTGACC
65 GAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGATC
* * * * *
18457393 CATTCATTCAAGCAATATTCCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTTTAAATAGT
128 CATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
*
18457458 TTGTCATTTTGTAAACAACATTTG
192 TTGTCATTTTGTAAACAACTTTTG
* ** ** **
18457482 GTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGATGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * * ** *
18457547 AACTTGTAAAACTTTTACGAGTTCTTTCAGAACTTCGATTCCTTAAAGTATTAAAGAAAATTCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
18457612 TCCTTCGAGCAATTATTTTAACATTCCATGGTCGAGAAATCGCATCATTTTGTCTAAATTGTTTG
131 TCCTTCGAGCAATT-TCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
18457677 TCATTATATAAACAAC-TTTA
195 TCATTTTGTAAACAACTTTTG
* * * *
18457697 GTCTTTGAATTAAAAAC-----TACGTGAGAATAGTTTCTCTCTTGGTTCTAGTCTGAAC-TATC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* ** * * * * *
18457756 AAACTTGTTTAACTTTTATGAGTTCTTTTATAATTTCGGTTCCATAATGTATTCAAGATGATCCA
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
18457821 TTCCTTCGAACAATTT-TCGAACATTCCAGGTTCGGGAATTCGCATCATTTGGTCTAAATAGTTC
130 TTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* *
18457885 GTCAATTTGTAAACAAATTTTG
194 GTCATTTTGTAAACAACTTTTG
* * * *
18457907 TTCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTCATGGTTCCTT-GCCGAAC-TAC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTA-
* * * *
18457970 AGAACTTGTCAAACTTTTGCG-GTTTCTTTTATAACCTT-GGTTCCATAAAGT-TTCAAGATG-T
64 TGAACTTGTCAAACTTTTACGAG-TTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * *
18458031 CCCATTCATTCGAGCAATCTTTTGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATA
127 -CCATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
*
18458096 GTTTGTCATTTTGTAAACAACATTTG
190 GTTTGTCATTTTGTAAACAACTTTTG
* * * * *
18458122 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGG-CCCTGGACGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * * *
18458186 AACTTGTCAAACTTTTACGAGTTATTTCA-ATACTTCAGTTCCTTAAAGCATTCAAGACTATCCC
66 AACTTGTCAAACTTTTACGAGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
18458250 TTCCTTCGAGCAATTT
130 TTCCTTCGAGCAATTT
18458266 TTCGAATAGC
Statistics
Matches: 2917, Mismatches: 522, Indels: 236
0.79 0.14 0.06
Matches are distributed among these distances:
203 6 0.00
204 157 0.05
205 120 0.04
206 158 0.05
207 69 0.02
208 5 0.00
209 54 0.02
210 119 0.04
211 3 0.00
212 3 0.00
213 11 0.00
214 143 0.05
215 751 0.26
216 1290 0.44
217 25 0.01
218 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAACTTTTG
Found at i:18455310 original size:431 final size:430
Alignment explanation
Indices: 18454494--18458265 Score: 3720
Period size: 431 Copynumber: 8.8 Consensus size: 430
18454484 GTATTCTCTA
* ** ** * * *
18454494 GTCTTTGAATCAAAAACTTATTTACACGAGAAACGTTTCTCTCTTGGTTCTTGTCTGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * *
18454559 AACTTGTCAAACTTTTATGAATTCTTTAATAACTTGGGTTCCTTAAAGTATTCATGACGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * * * * *
18454624 TCCTTCAAACAATTTTTTGGAA-ATTCCAGGCACGAGAAATTGCATCTTTTAGTATAAATAGTTC
131 TCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
*
18454688 GTCAATTTGTAAACAACTTCTT-GTCTTTGAACTAAAAACTTA--T---T-----TTGTTTCTCT
195 GTCAATTTGTAAACAACTT-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * * *
18454742 CTTGGTTCCTTACCGAACTATTGAACTTGACAAACTTTTACGATTTATTTTATAACTTCGGTTCC
259 CTTGGTT-CTTGCCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCC
* *
18454807 TTAAAGTATTTAAGACGATCCATTCCTTCGAGCAATTTCTGAACATTCCATGCTTGGGAAATCGC
323 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGC
* * * * *
18454872 ATTATTTGGTCTAAATACTTTCTCATTTTGTAAATAGCTTTTG
388 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* ** * * *
18454915 GTCTCTGAATTAAAAACTTATTTTTGTGAGAATTGTTCCTCTCTTGGCTCTTGGACGAACTTATG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * *
18454980 TACTTGTCAAACTTTTACGAGTTCTTTCAAAACTTCGGTTCCTTAAAGCATTCAAGATGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * **
18455045 TCCTTCGAGCAATTTTCCGAACATTCCATGCTCAGGACATCGCATCTTTTGGTCTAAATAGTTCA
131 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
18455110 TCAATTTGTAAACAACTTTTGGTCTTGGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCT
196 TCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
18455175 TGGTTACTTGCCGAACTATCGAACTTGTCAAACTTTTGCGATTTCTTTTATAACTTTGATTTCTT
261 TGGTT-CTTGCCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTT
* * * *
18455240 AAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTCTGAACATTCCTTGCTTGGGAAATCGCTT
325 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCAT
* * * *
18455305 TATTTGGTCTAAATAGTTTGTAATTTTGTAAATAGCTTTTG
390 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * *
18455346 GTCTTTCAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGCCGAA-TTTTC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * * * *
18455410 GAATTTGTCAAA-TTGTTATGAATTCTTTTATAACTTCGGTTCCATAAAATATTGAAGACGA-CC
65 GAACTTGTCAAACTT-TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
18455473 AATTCATTCGAGCAATTTTTGGAACATTCCATGCTCGGGAAATAGTATCATTCGGTTTAAATAGT
129 -ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * ** *
18455538 TTGTC-TTTTTTAATACAAAATTTGGTCTTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
193 TTGTCAATTTGTAA-ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
** * * * * *
18455602 CTCTTGCCTCTTGGACGAACTTTCGAACTTGT-AAAGCTTTTACGAGTTCTTTCAAAACTTCGAT
257 CTCTTGGTTCTT-GCCGAACTATCGAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACTTTGAT
* * * *
18455666 TCCTTATAGTATTAAAGACGATCCA----TTC---C---TTC-GAACATTCCATGCTCAGGAAGT
320 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAAT
* * *
18455720 CGCATCATTTGGTCTTAATAGTTTGTCATTTTGTAAATAGCTTTTG
385 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * *
18455766 GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGATCTTGGCCGAAC-TATC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* * * * *
18455830 GAACTTGTCACAA-TGTTACGAGTTCTTTTATAACTTCAGTTCCATAAAATATTGAAGACGA-CC
65 GAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
18455893 AATTCATTCGAGCAATATTCCGAACATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGT
129 -ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
18455958 TTGTCATTTTGTAAACAACATTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTC
193 TTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
** ** * * * * *
18456023 TCTTGCCTCTTGGATGAACT-TCCGAACTTGTAAAAATTTTACGAGTTCTTTCAAAACTTCGATT
258 TCTTGGTTCTT-GCCGAACTAT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATT
* ** * ** * *
18456087 CCTTAAAGTATTAAAGAAAATCCATTCCTTCAAGCAATTATCCAAACATTCCATGATCGAGAAAT
321 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TCTGAACATTCCATGCTCGGGAAAT
* * * * * *
18456152 CGCATCATTTTGTCTAAATTGTTTGTCCTTATATAAACAACTTTTA
385 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * *
18456198 ATCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTAGTCCGAAC-TATC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTAT-
* ** * * * * *
18456262 AAACTTGTTTAACTTTTATGAGTTCTTTTATAATTTTGGTTCCATAATGTATTCAAGACGATCCA
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
18456327 TTCCTTCGAACAATTTTTCGAACATTCCAGGTTCGGGAATTCGGATCATTTGGTCTAAATAGTTC
130 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * ** * * * *
18456392 ATCAATTTGTAAACAAATTTTTTTCTTTAAATTAAAAGCTTATTTACATGAGAATTATTTCTCTC
195 GTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
18456457 TTGGTTCCTTGCCGAACTACCGAACTTGTCAAACTTTTGC-AGTTTCTTTTATAACCTCGATTCC
260 TTGGTT-CTTGCCGAACTATCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTTGATTCC
* * * * * *
18456521 ATAAAGTATTCAGGATG-TCCCATTCATTCGAGCAATCTTCTGAACATTCCATGCTCGAGAAATT
323 TTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAAATC
18456585 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATTTG
386 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTG
* * * * *
18456630 GTTTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGTCCGAACTTCTA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * ** * * * * *
18456695 AACTT-TCAATCTTTTACGAGTTCCTTTATATTTTTGGTTCCTCATAGTTTTCAAGACAATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
** *
18456759 TCC-TCGGAGCAATTTTTCGAACATTCCATGCTCGGGAAGCCGCATCATTTTGTCTAAATAGTTT
131 TCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * ** *
18456823 TTCATTTTATAAACATCTTTTAGTCTTTGAATTGAAAACTTATTTACGTGAGAATCATTTCCCTC
195 GTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
18456888 TTGGTTCTTGTCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATGAC-TTCAGTTCC
260 TTGGTTCTTG-CCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGA-TTCC
* ** * * * *
18456952 TTAAAGTAATCAA-AGCGATCCATTCCTTCGAATAATTTTTCAAACATTTCAGGCTCGGGAAATC
323 TTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATC
* * *
18457016 ACATCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAACTTTTG
386 GCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAACTTTTG
* *
18457061 GTCTTTG-ATATAAAAACTTATTTACATGTGAATTGTTTCTCTCTTGGTTCCCTT--CCGAAC--
1 GTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--CTTGGCCGAACTT
* ** * *
18457121 -T--AC----CGAACTTTTGTGATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATC
63 ATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * * ** *
18457179 CATTCCTTCAAGCAA-TTTCCAAACATTCCATGCTCGGGAAATCATATCATTTAGTCTAAATAGT
128 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
18457243 TTAT-AATTTTGTAAATAGCTTTTGGTCTTTGAATT-AAAACTTATTTACATGAGAATTGTTTCT
193 TTGTCAA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * **
18457306 CTCTTGGTTCTTGGCCGAACTTTCAAACTTGTCAAAATTTTATGA-TTGCTTTTATAACTTCAAT
257 CTCTTGGTTCTT-GCCGAACTATCGAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTTGAT
* ** * * * * *
18457370 T-CTCTAAAGTGTTCAAGTTGACCCATTCATTCAAGCAATATTCCGAACATTCCATGCTCGTGAA
320 TCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT-TTCTGAACATTCCATGCTCGGGAA
* *
18457434 ATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACATTTG
383 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* ** ** **
18457482 GTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGATGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
* * * * * ** *
18457547 AACTTGTAAAACTTTTACGAGTTCTTTCAGAACTTCGATTCCTTAAAGTATTAAAGAAAATTCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
18457612 TCCTTCGAGCAATTATTT-TAACATTCCATGGTCGAGAAATCGCATCATTTTGTCTAAATTGTTT
131 TCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
18457676 GTC-ATTATATAAACAAC-TTTAGTCTTTGAATTAAAAAC-----TACGTGAGAATAGTTTCTCT
195 GTCAATT-TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * ** * *
18457734 CTTGGTTCTAGTCTGAACTATCAAACTTGTTTAACTTTTATGAGTTCTTTTATAA-TTTCGGTTC
259 CTTGGTTCTTG-CCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GATTC
* * * * * * *
18457798 CATAATGTATTCAAGATGATCCATTCCTTCGAACAATTT-TCGAACATTCCAGGTTCGGGAATTC
322 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGGGAAATC
* * *
18457862 GCATCATTTGGTCTAAATAGTTCGTCAATTTGTAAACAAATTTTG
386 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * *
18457907 TTCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTCATGGTTCCTT-GCCGAAC-TAC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGCCGAACTTA-
* * * *
18457970 AGAACTTGTCAAACTTTTGCG-GTTTCTTTTATAACCTT-GGTTCCATAAAGT-TTCAAGATG-T
64 TGAACTTGTCAAACTTTTACGAG-TTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACGAT
* * *
18458031 CCCATTCATTCGAGCAATCTTTT-GAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAAT
127 -CCATTCCTTCGAGCAAT-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* *
18458095 AGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
190 AGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* ** * * * * * * *
18458160 CACTCTTGGCCCTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTATTTCA-ATAC-TTCA
255 CTCTCTTGGTTCTTGCCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATA-ACTTTGA
* * *
18458223 GTTCCTTAAAGCATTCAAGACTATCCCTTCCTTCGAGCAATTT
319 -TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
18458266 TTCGAATAGC
Statistics
Matches: 2786, Mismatches: 462, Indels: 198
0.81 0.13 0.06
Matches are distributed among these distances:
419 4 0.00
420 373 0.13
421 407 0.15
422 76 0.03
423 53 0.02
424 85 0.03
425 172 0.06
426 103 0.04
427 6 0.00
428 2 0.00
429 68 0.02
430 132 0.05
431 825 0.30
432 469 0.17
433 11 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (430 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTATG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
TCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGCCGAACTATCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTA
AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTGAACATTCCATGCTCGGGAAATCGCATC
ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
Found at i:18458693 original size:216 final size:216
Alignment explanation
Indices: 18458296--18462308 Score: 3813
Period size: 216 Copynumber: 18.7 Consensus size: 216
18458286 GAAATATAAT
* * * *
18458296 CTTTTGGTCTTTTAATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTTTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * ** * * * ** *
18458361 CTTCCAAACTTTTCAATCTTTTACAAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTTGATACG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * *
18458426 CTCCATTCCTTGGAGCAATATTTCGAACATTCCTTGCTCAGGAAGTCACATCATTTTGTCTAAAT
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
* *
18458491 ATTTTGTCATTTTATAAACAA
196 AGTTTGTCATTTTGTAAACAA
* * ** *
18458512 CTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCCCTCTTGGTTCTTGTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * * *
18458577 CTTTCGAATTTTTCAAAATTTTACGAGTTCTTTTGTAACTTCCGTTCCTTAAAGTAATCAAAACG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
** * * * * *
18458642 ATCCATTCCATT-GAATAATTTTTCGAATATTTCAGGCTTGGGAAATCACATC-TTTTGGTCTAA
131 ATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAA
*
18458705 ATAGTTCT-TCAATTTGTAAACAA
194 ATAGTT-TGTCATTTTGTAAACAA
* *
18458728 CTTTTGGTCTTTGACA-TAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCCCT-TCCG
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCG
** * * *
18458791 AACTACCGAACTTGTCTAACTTTTGCGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
*
18458856 CGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * *
18458920 ATAGTTTATCATTTTGTAAATAG
194 ATAGTTTGTCATTTTGTAAACAA
* * * * * *
18458943 TTTTTGGTCTTTGAATTAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTTGTTCTTGGCCTAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * ** * * * *
18459008 CTTTCGAACTTGTCAAAATTTTAGGACTTCTTTTATAACATCAATTCCCTCAAGTATTCAAAATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
18459073 A-CATATTCATTCGAGCAATATTCCGAACATTCCATGCTCGGGAAGTCTCATCATTTAGTGTAAA
131 ATC-CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
18459137 TAGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * * * ** **
18459159 CATTTCGTCTTTGGATTTAAAACATATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * *
18459224 C-TTCTGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAACTATTAAAGAC
66 CTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* *
18459288 GATCCATTCCTTCGAGCATTTTTTCGAACATTCCATGCTCGGGAATTCGCATCATTTTGTCTAAA
130 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
* *
18459353 TAGTTTGTCATTTTATAAATAA
195 TAGTTTGTCATTTTGTAAACAA
*** ** * *
18459375 C-TTTACCCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCCCTCTTGGTTCTTGTCCAAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * **
18459439 CTTTCGAACTTGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAATCAAAATA
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * *
18459504 ATCCATTCCATCGA--ATATATTTTCAAACATTTCAAGCTCGGGAAATCACATC-TTTTGGTCTA
131 ATCCATTCCTTCGAGCA-AT-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTA
*
18459566 AATAGCTCTT-T-AATTTGTAAACAA
193 AATAG-T-TTGTCATTTTGTAAACAA
* * * * * *
18459590 CTTTTGGTCTTTGACA-TAAAAACTTATTTTCGTGTGAATTATTTCTCTCCTGGTTCACT-TCAG
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGTCCG
** * * * *
18459653 AACTACCGAACTTGTCTAACTTTTGCGATTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * ** *
18459718 TGATCCATTCCTTCGAGCAATTTCT-GAGCATTCCATGCTAAGGAAATCGCATCATTTGGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * *
18459782 ATAGTTTATCATTTTGTAAATAG
194 ATAGTTTGTCATTTTGTAAACAA
* * * *
18459805 CTTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGACCTAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * ** * *
18459870 CTTCCGAACTTGTCAAAATTTTATGACTTCTTTTATAACTTCAATTCCTTAAAGTATTGAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
18459935 ACCCATTCATTCGAGCAATATTCCGAGCATTACATGCTCGGGAAATCGTATCATTTGGTCTAAAT
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
18460000 AGTTTGTCATTTTGTAAACAA
196 AGTTTGTCATTTTGTAAACAA
* * * * ** * **
18460021 CATTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTATTGGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
** * * * * * * * *
18460086 CTCCCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAATAAAGACG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * **
18460151 ATCCATTCCTTCGAGCAATTTTTCG---GTTCTA-G-TC--CTAA---C-T-A-----TC-AAAC
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA-
* **
18460198 TTGTTTGTCA-TTCATAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* ** *
18460219 CTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTCTAGTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * ** * * **
18460284 CTATCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTAGTTGCTTAACGTATTCAAGGTG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * *
18460349 ATCCATTCCTTTGAACAA-TTTTCTGAACATTCCAAGTTCGGGAAATCGCATCATTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
* *
18460413 TAGTTTGTCAATTTGTAGACAA
195 TAGTTTGTCATTTTGTAAACAA
* * *
18460435 ATTTTGTTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTGT-CGA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGA
** *
18460499 ACTACCGAACTTGTCAAACTTTTACG-GTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGA
65 ACTTTCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * *
18460563 C-CTCCCATTCATTCGAGCAATCTTTCGAGCATTCCATGCTCGAGAAATTGCATCATTTGGTCTA
129 CGAT-CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
* *
18460627 ACTAGTTTGGCATTTTGT--A-AA
193 AATAGTTTGTCATTTTGTAAACAA
* * * ** **
18460648 C--TTCGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGCCCTTGGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * * * *
18460711 CTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACTTTGGTTCCTTAAAGCATTCAAGACT
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * ** * * * * *
18460776 ATCCATTCCCTCGAGCAATTTTTTGAGTAGTCCGTACTCGAGAAATCGAATC-TTTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAAA
*
18460840 TAGTTTGTCATTTTATAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* *
18460862 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCAT-GTTCTTGTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * ** * * *
18460926 CTTCCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTCAAGACG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * *
18460991 ATCCAATCCTTGGAGCAATTTTTCGAACATTCCATGCTTGGGGAGTTGCATCATTTTCTCTAAAT
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
* * *
18461056 ATTTTTTCATTTTATAAACAA
196 AGTTTGTCATTTTGTAAACAA
* ** * *
18461077 CTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCATTTCCCTCTTGGTTCTTGTCTGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * *
18461141 CTTTCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTA-TCAAAATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * ** * * * * * *
18461205 ATCTATGCCTTCGAATAATTTTTCAAACTTTTCAGGCTCGGGAAATCACGTC-TTTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAAA
*
18461269 TAGTTCT-TCAATTTGTAAACAA
195 TAGTT-TGTCATTTTGTAAACAA
* * * * * *
18461291 CTTTTGGTCTTTGACA-TGAAAACTTATTTACGTGTGAATTATTTCTCTCTTGATTCCCT-TCCA
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCG
** * * * * **
18461354 AACTACCGAAGTTGTCAAACTTTTGCGATTTCTTTTATGACTTTAGTTCCTTAAAGTATTCAAGA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* ** *
18461419 CAATCCATTCCTTCGAGCAA-TTTTCGAACA-TCCATGCTTAGGAAATCGCATCATTTGGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * *
18461482 ATAGTTTATCATTTTGTAAATAG
194 ATAGTTTGTCATTTTGTAAACAA
*
18461505 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * ** * * *
18461570 CTTTTGAACTTATCAAAATTTTACGACTCCTTTTATAACTTCAATTCCCTAAAGTATCCAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * ** * * * *
18461635 ACCCATTCATTCGAGCAATATTCCGAACATTATATGCTCGGCAAATAGAATCATTTGGTCTAAAT
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
*
18461700 AATTTGTCATTTTGTAAACAA
196 AGTTTGTCATTTTGTAAACAA
* * * * * * * ** *
18461721 CTTTTGGTATTTGAATTAAAAAGTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * *
18461786 CTTTCGAACTTTTCAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAAAATATTCAAGACT
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* ***
18461851 ATCAATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTAAGAAATCGCAGT-ATTTTGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA-TCATTTTGTCTAAA
* *
18461915 TACTTTGTCATTTTATAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * * ** * *
18461937 CTTTTAGCCTTTGAATTAAAAAGTTATTTTCGTGAGAATCATTTCTCTCTTGGTTCTTATCTGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * * ** *
18462002 GTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCATTAATTTATTCAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * ** * * *
18462067 CTCCATTCCTTCTAACAATTTTTTGAAAATTTTAGGCTCGGGAAATCCCATCATTTGGTCTAAAT
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
* *
18462132 AGTTCGTCAATTTGTAAACAA
196 AGTTTGTCATTTTGTAAACAA
** * * * * *
18462153 AATTGGGTCTTTGTATTAAGAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTCCTTG-CCAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGA
*** * * * * *
18462217 ACAACCGAACTTGTCAAACTTTTACGATTTCTTTCATAAATTTGGTTCCATAAAGTATTCAAGAC
65 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* *
18462282 GATCCATTCCTTCGTG-AAATTTTCGAA
130 GATCCATTCCTTCGAGCAATTTTTCGAA
18462309 TGATAAGTGC
Statistics
Matches: 3058, Mismatches: 657, Indels: 165
0.79 0.17 0.04
Matches are distributed among these distances:
197 5 0.00
198 130 0.04
199 11 0.00
201 4 0.00
202 1 0.00
203 2 0.00
204 1 0.00
205 3 0.00
208 1 0.00
209 3 0.00
210 8 0.00
211 163 0.05
212 3 0.00
213 17 0.01
214 282 0.09
215 832 0.27
216 1566 0.51
217 25 0.01
218 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (216 bp):
CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
AGTTTGTCATTTTGTAAACAA
Found at i:18458939 original size:19 final size:20
Alignment explanation
Indices: 18458906--18458945 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
18458896 GGGAAATCGC
18458906 ATCATTTTGTCTAAATAGTTT
1 ATCATTTTG-CTAAATAGTTT
18458927 ATCATTTTG-TAAATAGTTT
1 ATCATTTTGCTAAATAGTTT
18458946 TTGGTCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
21 9 0.47
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (20 bp):
ATCATTTTGCTAAATAGTTT
Found at i:18459139 original size:431 final size:430
Alignment explanation
Indices: 18458296--18462304 Score: 3840
Period size: 431 Copynumber: 9.4 Consensus size: 430
18458286 GAAATATAAT
* * * **
18458296 CTTTTGGTCTTTTAATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTTTCCGAA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * * * * ** * * * ** *
18458361 CTTCCAAACTTTTCAATCTTTTACAAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTTGATACG
65 CTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * *
18458426 CTCCATTCCTTGGAGCAATATTTCGAACATTCCTTGCTCAGGAAGTCACATCATTTTGTCTAAAT
130 ATCCATTCCTTCGAGCAAT-TTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAAT
* *
18458491 ATTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTT
194 AGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTT
* * * * * * *
18458556 CCCTCTTGGTTCTTGTCCGAACTTTCGAATTTTTCAAAATTTTACGAGTTCTTTTGTAACTTCCG
259 CTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG
* * * * * * *
18458621 TTCCTTAAAGTAATCAAAACGATCCAT-TCCATT-GAATAATTTTTCGAATATTTCAGGCTTGGG
324 TTCCTTAAAGTATTCAAAATGA--CATATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGG
*
18458684 AAATCACATCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAA
387 AAATCACATCATTTGGTCTAAATAGTT-TGTCAATTTGTAAACAA
*
18458728 CTTTTGGTCTTTGACATAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * *
18458793 CTACCGAACTTGTCTAACTTTTGCGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
65 CTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
*
18458858 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAATA
* * * ** * * * **
18458923 GTTTATCATTTTGTAAATAGTTTTTGGTCTTTGAATTAAAAACTTATTTACTTAAGAATTGTTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * * * *
18458988 TCTCTTTGTTCTTGGCCTAACTTTCGAACTTGTCAAAATTTTAGGACTTCTTTTATAACATCAAT
260 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * * * * *
18459053 TCCCTCAAGTATTCAAAATGACATATTCATTCGAGCAATATTCCGAACATTCCATGCTCGGGAAG
325 TCCTTAAAGTATTCAAAATGACATATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGGAAA
* * * *
18459118 TCTCATCATTTAGTGTAAATAGTTTGTCATTTTGTAAACAA
390 TCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
* * * * * *
18459159 CATTTCGTCTTTGGATTTAAAACATATTTACGTGAGAATTGTTTCTCTCTT-G--CCTCTTGGAC
1 CTTTTGGTCTTT-GAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCC-CTT--CC
* * * * * * * *
18459221 GAACTTCTGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAACTATTAAAG
62 GAACTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* ** *
18459286 ACGATCCATTCCTTCGAGCATTTTTTCGAACATTCCATGCTCGGGAATTCGCATCATTTTGTCTA
127 ACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTA
* **
18459351 AATAGTTTGTCATTTTATAAATAAC-TTTACCCTTTGAATTAAAAACTTATTTACGTGAGAATCA
191 AATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCA
* * * *
18459415 TTTCCCTCTTGGTTCTTGTCCAAACTTTCGAACTTGTGAAACTTTTACGAGTTCTTTTATAACTT
256 TTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * *
18459480 CGGTTCCTTAAAGTAATCAAAAT-A-ATCCATTCCA-TCGAA-TATATTTTCAAACATTTCAAGC
321 CAGTTCCTTAAAGTATTCAAAATGACAT--ATT-CATTCGAACAAT-TTTTCGAACATTTCATGC
*
18459541 TCGGGAAATCACATCTTTTGGTCTAAATAGCTCTT-T-AATTTGTAAACAA
382 TCGGGAAATCACATCATTTGGTCTAAATAG-T-TTGTCAATTTGTAAACAA
* * * * * *
18459590 CTTTTGGTCTTTGACATAAAAACTTATTTTCGTGTGAATTATTTCTCTCCTGGTTCACTTCAGAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * * * *
18459655 CTACCGAACTTGTCTAACTTTTGCGATTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGATG
65 CTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * *
18459720 ATCCATTCCTTCGAGCAATTTCTGAGCATTCCATGCTAAGGAAATCGCATCATTTGGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAATA
* * * * * * **
18459785 GTTTATCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * * * * *
18459850 TCTCTTAGTTCTTGACCTAACTTCCGAACTTGTCAAAATTTTATGACTTCTTTTATAACTTCAAT
260 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * ** * * * * *
18459915 TCCTTAAAGTATTGAAGATGACCCATTCATTCGAGCAATATTCCGAGCATTACATGCTCGGGAAA
325 TCCTTAAAGTATTCAAAATGACATATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGGAAA
** *
18459980 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
390 TCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
* * * * *
18460021 CATTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-G--CCTATTGGAC
1 CTTTTGGTCTTT-GAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCC-CTT--CC
* * * * * * * * *
18460083 GAACTCCCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAATAAAG
62 GAACTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
** ** *
18460148 ACGATCCATTCCTTCGAGCAATTTTT---CGGT---T-C-TA-G---TC-C-T-A-ACTATC-AA
127 ACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAA
* *
18460196 ACTTGTTTGTCA-TTCATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCA
192 A-TAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCA
* * * * *
18460260 TTTCTCTCTTGGTTCTAGTCCGAACTATCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTT
256 TTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * ** * * * * * *
18460325 TAGTTGCTTAACGTATTCAAGGTGATC-CATTCCTTTGAACAA-TTTTCTGAACATTCCAAGTTC
321 CAGTTCCTTAAAGTATTCAAAATGA-CATATTCATTCGAACAATTTTTC-GAACATTTCATGCTC
* *
18460388 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAGACAA
384 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
* * * *
18460435 ATTTTGTTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT-CCTTGTCGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTT-CCGA
*
18460499 ACTACCGAACTTGTCAAACTTTTACG-GTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGA
64 ACTACCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * *
18460563 C-CTCCCATTCATTCGAGCAATCTTTCGAGCATTCCATGC-TCGAGAAATTGCATCATTTGGTCT
128 CGAT-CCATTCCTTCGAGCAAT-TTTTGAACATTCCATGCTTAG-GAAATCGCATCATTTTGTCT
* * * * * *
18460626 AACTAGTTTGGCATTTTGT--A-AAC--TTCGTCTTTGACTTAAAAACTTATTTACGTGAGAATT
190 AAATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATC
* * ** * * * * * *
18460686 GTTTCACTCTTGGCCCTTGGACGAACTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACT
255 ATTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
** * ** * * ** * * * *
18460751 TTGGTTCCTTAAAGCATTC--AA-GACTATCCATTCCCTCGAGCAATTTTTTGAGTAGTCCGTAC
320 TCAGTTCCTTAAAGTATTCAAAATGAC-AT--ATTCATTCGAACAATTTTTCGAACATTTCATGC
* * * *
18460813 TCGAGAAATCGA-ATCTTTTGGTCTAAATAGTTTGTCATTTTATAAACAA
382 TCGGGAAATC-ACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
* * *
18460862 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCAT-GTT-CTTGTCCGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCT-TCCGA
* * * * ** * * *
18460925 ACTTCCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTCAAGAC
64 ACTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * * *
18460990 GATCCAATCCTTGGAGCAATTTTTCGAACATTCCATGCTTGGGGAGTTGCATCATTTTCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAA
* *
18461055 TATTTTTTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCATT
193 TAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATT
* * * * * *
18461119 TCCCTCTTGGTTCTTGTCTGAACTTTCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
258 TCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA
* * * * * *
18461184 GTTCCTTAAAGTA-TCAAAATGATC-TATGCCTTCGAATAATTTTTCAAACTTTTCAGGCTCGGG
323 GTTCCTTAAAGTATTCAAAATGA-CATATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGG
* *
18461247 AAATCACGTCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAA
387 AAATCACATCATTTGGTCTAAATAGTT-TGTCAATTTGTAAACAA
* * * * *
18461291 CTTTTGGTCTTTGACATGAAAACTTATTTACGTGTGAATTATTTCTCTCTTGATTCCCTTCCAAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * * * ** *
18461356 CTACCGAAGTTGTCAAACTTTTGCGATTTCTTTTATGACTTTAGTTCCTTAAAGTATTCAAGACA
65 CTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
18461421 ATCCATTCCTTCGAGCAATTTTCGAACA-TCCATGCTTAGGAAATCGCATCATTTGGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAATA
* * * * * **
18461485 GTTTATCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * * *
18461550 TCTCTTGGTTCTTGGCCGAACTTTTGAACTTATCAAAATTTTACGACTCCTTTTATAACTTCAAT
260 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * ** * * * *
18461615 TCCCTAAAGTATCCAAGATGACCCATTCATTCGAGCAATATTCCGAACATTAT-ATGCTCGGCAA
325 TCCTTAAAGTATTCAAAATGACATATTCATTCGAACAATTTTTCGAACATT-TCATGCTCGGGAA
* * *
18461679 AT-AGAATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAA
389 ATCA-CATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
* * * * * * * *** *
18461721 CTTTTGGTATTTGAATTAAAAAGTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
** * * * * * *
18461786 CTTTCGAACTTTTCAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAAAATATTCAAGACT
65 CTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
18461851 ATCAATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTAAGAAATCGCAGT-ATTTTGTCTAAA
130 ATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTTAGGAAATCGCA-TCATTTTGTCTAAA
* * * *
18461915 TACTTTGTCATTTTATAAACAACTTTTAGCCTTTGAATTAAAAAGTTATTTTCGTGAGAATCATT
193 TAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATT
** * * * * *
18461980 TCTCTCTTGGTTCTTATCTGAAGTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAATTTCA
258 TCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA
* ** * * * * * * *
18462045 GTTCATTAATTTATTCAAGATG-C-TCCATTCCTTCTAACAATTTTTTGAAAATTTTAGGCTCGG
323 GTTCCTTAAAGTATTCAAAATGACAT--ATTCATTCGAACAATTTTTCGAACATTTCATGCTCGG
* *
18462108 GAAATCCCATCATTTGGTCTAAATAGTTCGTCAATTTGTAAACAA
386 GAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
** * * * * *
18462153 AATTGGGTCTTTGTATTAAGAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTT-CCTTGCCAA
1 CTTTTGGTCTTTG-AATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTT-CCGA
* * * * * *
18462217 ACAACCGAACTTGTCAAACTTTTACGATTTCTTTCATAAATTTGGTTCCATAAAGTATTCAAGAC
64 ACTACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* *
18462282 GATCCATTCCTTCGTGAAATTTT
129 GATCCATTCCTTCGAGCAATTTT
18462305 CGAATGATAA
Statistics
Matches: 2889, Mismatches: 589, Indels: 198
0.79 0.16 0.05
Matches are distributed among these distances:
413 7 0.00
414 302 0.10
415 17 0.01
416 2 0.00
417 1 0.00
418 3 0.00
419 2 0.00
421 1 0.00
422 3 0.00
423 2 0.00
424 4 0.00
425 4 0.00
426 119 0.04
427 212 0.07
428 78 0.03
429 217 0.08
430 426 0.15
431 946 0.33
432 533 0.18
433 9 0.00
434 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (430 bp):
CTTTTGGTCTTTGAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAAC
TACCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTTAGGAAATCGCATCATTTTGTCTAAATAG
TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCT
CTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
CCTTAAAGTATTCAAAATGACATATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGGAAAT
CACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA
Found at i:18459593 original size:862 final size:862
Alignment explanation
Indices: 18458298--18462308 Score: 4895
Period size: 862 Copynumber: 4.7 Consensus size: 862
18458288 AATATAATCT
* * * ** ***
18458298 TTTGGTCTTTTAATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTTTCCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
* * * * ** * * ** * *
18458363 TCCAAACTTTTCAATCTTTTACAAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTTGATACGCT
66 TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
* * * * * *
18458428 CCATTCCTTGGAGCAATATTTCGAACATTCCTTGCTCAGGAAGTCACATCATTTTGTCTAAATAT
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAATTCGCATCATTTTGTCTAAATAG
*
18458493 TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCC
196 TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCC
* * * * * *
18458558 CTCTTGGTTCTTGTCCGAACTTTCGAATTTTTCAAAATTTTACGAGTTCTTTTGTAACTTCCGTT
261 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
* * * *
18458623 CCTTAAAGTAATCAAAACGATCCATTCCATT-GAATAATTTTTCGAATATTTCAGGCTTGGGAAA
326 CCTTAAAGTAATCAAAATGATCCATTCC-TTCGAATAA-TTTTCAAACATTTCAGGCTCGGGAAA
18458687 TCACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACT
389 TCACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACT
* *
18458752 TATTTACGTGTGAATTGTTTCTCTCTTGGTTCCCTTCCGAACTACCGAACTTGTCTAACTTTTGC
454 TATTTACGTGTGAATTATTTCTCTCTTGGTTCCCTTCCGAACTACCGAACTTGTCAAACTTTTGC
*
18458817 GATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTG
519 GATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCG
* * *
18458882 AACATTCCATGCTTGGGAAATCGCATCATTTTGTCTAAATAGTTTATCATTTTGTAAATAGTTTT
584 AACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTT
* * * *
18458947 TGGTCTTTGAATTAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTTGTTCTTGGCCTAACTTT
649 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * *
18459012 CGAACTTGTCAAAATTTTAGGACTTCTTTTATAACATCAATTCCCTCAAGTATTCAAAATGACAT
714 CGAACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCAAAATGACAC
* * ** * *
18459077 ATTCATTCGAGCAATATTCCGAACATTCCATGCTCGGGAAGTCTCATCATTTAGTGTAAATAGTT
779 ATTCATTCGAGCAATATTCCGAACATTACATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTT
18459142 TGTCATTTTGTAAACAACA
844 TGTCATTTTGTAAACAACA
* * * *
18459161 TTTCGTCTTTGGATTTAAAACATATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
** * * *
18459226 TCTGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAACTATTAAAGACGAT
66 TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
* *
18459291 CCATTCCTTCGAGCATTTTTTCGAACATTCCATGCTCGGGAATTCGCATCATTTTGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAATTCGCATCATTTTGTCTAAATAG
* **
18459356 TTTGTCATTTTATAAATAAC-TTTACCCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCC
196 TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCC
* * * *
18459420 CTCTTGGTTCTTGTCCAAACTTTCGAACTTGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTT
261 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
* * *
18459485 CCTTAAAGTAATCAAAATAATCCATTCCATCGAATATATTTTCAAACATTTCAAGCTCGGGAAAT
326 CCTTAAAGTAATCAAAATGATCCATTCCTTCGAATA-ATTTTCAAACATTTCAGGCTCGGGAAAT
* *
18459550 CACATCTTTTGGTCTAAATAGCTCTTTAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACTT
390 CACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACTT
* * * * *
18459615 ATTTTCGTGTGAATTATTTCTCTCCTGGTTCACTTCAGAACTACCGAACTTGTCTAACTTTTGCG
455 ATTTACGTGTGAATTATTTCTCTCTTGGTTCCCTTCCGAACTACCGAACTTGTCAAACTTTTGCG
* *
18459680 ATTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TTTCTG
520 ATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-G
* *
18459744 AGCATTCCATGCTAAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTT
584 AACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTT
* * * * *
18459809 TGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGACCTAACTTC
649 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * *
18459874 CGAACTTGTCAAAATTTTATGACTTCTTTTATAACTTCAATTCCTTAAAGTATTGAAGATGACCC
714 CGAACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCAAAATGACAC
* *
18459939 ATTCATTCGAGCAATATTCCGAGCATTACATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTT
779 ATTCATTCGAGCAATATTCCGAACATTACATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTT
18460004 TGTCATTTTGTAAACAACA
844 TGTCATTTTGTAAACAACA
* * * *
18460023 TTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTATTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
* ** * * * *
18460088 CCCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAATAAAGACGAT
66 TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
* ** * *
18460153 CCATTCCTTCGAGCAATTTTTCG----GT---T-CT-A-G---TC-C-T-A-ACTATC-AAACTT
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAATTCGCATCATTTTGTCTAAA-TA
*
18460200 GTTTGTCA-TTCATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * *
18460264 TCTCTTGGTTCTAGTCCGAACTATCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTAGT
260 CCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * ** * * * * * *
18460329 TGCTTAACGTATTCAAGGTGATCCATTCCTTTGAACAATTTTCTGAACATTCCAAGTTCGGGAAA
325 TCCTTAAAGTAATCAAAATGATCCATTCCTTCGAATAATTTTC-AAACATTTCAGGCTCGGGAAA
* * * * *
18460394 TCGCATCATTTGGTCTAAATAGTT-TGTCAATTTGTAGACAAATTTTGTTCTTTGA-ATTAAAAA
389 TCACATCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAACTTTTGGTCTTTGACA-TAAAAA
* * * *
18460457 CTTATTTACATGAGAATTGTTTCTCTCTTGGTT-CCTTGTCGAACTACCGAACTTGTCAAACTTT
452 CTTATTTACGTGTGAATTATTTCTCTCTTGGTTCCCTT-CCGAACTACCGAACTTGTCAAACTTT
* * * * *
18460521 TACGGTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGAC-CTCCCATTCATTCGAGCAATC
516 TGCGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAAT-
* * * * **
18460585 TTTCGAGCATTCCATGC-TCGAGAAATTGCATCATTTGGTCTAACTAGTTTGGCATTTTGT-AA-
579 TTTCGAACATTCCATGCTTAG-GAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAAT
* * * ** *
18460647 A-C--TTCGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGCCCTTGGACG
643 AGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG
* * * * * * * *** * *
18460709 AACTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACTTTGGTTCCTTAAAGCATTCAAGA
708 AACTTTCGAACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCAA-A
* ** * ** ** * * * * * *
18460774 CT-ATC-CATTCCCTCGAGCAATTTTTTGAGTAGTCCGTACTCGAGAAATCGAATCTTTTGGTCT
772 ATGA-CACATTCATTCGAGCAATATTCCGAACATTACATGCTCGGGAAATCGAATCATTTGGTCT
* *
18460837 AAATAGTTTGTCATTTTATAAACAACT
836 AAATAGTTTGTCATTTTGTAAACAACA
* * * **
18460864 TTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCATG-TTCTTGTCCGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
* * * ** * * *
18460928 TCCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTCAAGACGAT
66 TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
* * ** * *
18460993 CCAATCCTTGGAGCAATTTTTCGAACATTCCATGCTTGGGGAGTT-GCATCATTTTCTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCAGGAATTCGCATCATTTTGTCTAAATA
* *
18461057 TTTTTTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCATTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * *
18461121 CCTCTTGGTTCTTGTCTGAACTTTCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGT
260 CCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * *
18461186 TCCTTAAAGT-ATCAAAATGATCTATGCCTTCGAATAATTTTTCAAACTTTTCAGGCTCGGGAAA
325 TCCTTAAAGTAATCAAAATGATCCATTCCTTCGAATAA-TTTTCAAACATTTCAGGCTCGGGAAA
* *
18461250 TCACGTCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATGAAAACT
389 TCACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACT
* * *
18461315 TATTTACGTGTGAATTATTTCTCTCTTGATTCCCTTCCAAACTACCGAAGTTGTCAAACTTTTGC
454 TATTTACGTGTGAATTATTTCTCTCTTGGTTCCCTTCCGAACTACCGAACTTGTCAAACTTTTGC
* ** *
18461380 GATTTCTTTTATGACTTTAGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCG
519 GATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCG
18461445 AACA-TCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTT
584 AACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTT
18461509 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
649 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * * *
18461574 TGAACTTATCAAAATTTTACGACTCCTTTTATAACTTCAATTCCCTAAAGTATCCAAGATGACCC
714 CGAACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCAAAATGACAC
* * * *
18461639 ATTCATTCGAGCAATATTCCGAACATTATATGCTCGGCAAATAGAATCATTTGGTCTAAATAATT
779 ATTCATTCGAGCAATATTCCGAACATTACATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTT
*
18461704 TGTCATTTTGTAAACAACT
844 TGTCATTTTGTAAACAACA
* * * * * * * *
18461723 TTTGGTATTTGAATTAAAAAGTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
* * * * * * *
18461788 TTCGAACTTTTCAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAAAATATTCAAGACTAT
66 TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
* * * *
18461853 CAATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTAAGAAATCGCAGT-ATTTTGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAATTCGCA-TCATTTTGTCTAAATA
* * * *
18461917 CTTTGTCATTTTATAAACAACTTTTAGCCTTTGAATTAAAAAGTTATTTTCGTGAGAATCATTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * * *
18461982 TCTCTTGGTTCTTATCTGAAGTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
260 CCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* ** * * * * * * *
18462047 TCATTAATTTATTCAAGATGCTCCATTCCTTCTAACAATTTTTTGAAA-ATTTTAGGCTCGGGAA
325 TCCTTAAAGTAATCAAAATGATCCATTCCTTCGAATAA--TTTTCAAACATTTCAGGCTCGGGAA
* * * ** * * *
18462111 ATCCCATCATTTGGTCTAAATAGTTCGTCAATTTGTAAACAAAATTGGGTCTTTGTA-TTAAGAA
388 ATCACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTG-ACATAAAAA
* * * *
18462175 CTTATTTACGTGAGAATTCTTTCTCTCTTGGTT-CCTTGCCAAACAACCGAACTTGTCAAACTTT
452 CTTATTTACGTGTGAATTATTTCTCTCTTGGTTCCCTT-CCGAACTACCGAACTTGTCAAACTTT
* * * * * * *
18462239 TACGATTTCTTTCATAAATTTGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGTGAAATTT
516 TGCGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
18462304 TCGAA
581 TCGAA
18462309 TGATAAGTGC
Statistics
Matches: 2679, Mismatches: 413, Indels: 113
0.84 0.13 0.04
Matches are distributed among these distances:
840 81 0.03
841 215 0.08
842 2 0.00
843 1 0.00
844 27 0.01
845 314 0.12
846 49 0.02
847 6 0.00
848 2 0.00
849 3 0.00
851 1 0.00
852 1 0.00
854 46 0.02
855 14 0.01
856 195 0.07
857 110 0.04
858 38 0.01
859 217 0.08
860 148 0.06
861 95 0.04
862 927 0.35
863 187 0.07
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (862 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGAACT
TCCAAACTTTTCAAACTTTTACGAGTTCTTTCAAAACTTTGGTTCCTTAAAGTATTAAAGACGAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAATTCGCATCATTTTGTCTAAATAG
TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCC
CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
CCTTAAAGTAATCAAAATGATCCATTCCTTCGAATAATTTTCAAACATTTCAGGCTCGGGAAATC
ACATCTTTTGGTCTAAATAGTTCTTCAATTTGTAAACAACTTTTGGTCTTTGACATAAAAACTTA
TTTACGTGTGAATTATTTCTCTCTTGGTTCCCTTCCGAACTACCGAACTTGTCAAACTTTTGCGA
TTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAA
CATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAATAGCTTTTG
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCG
AACTTGTCAAAATTTTACGACTTCTTTTATAACTTCAATTCCCTAAAGTATTCAAAATGACACAT
TCATTCGAGCAATATTCCGAACATTACATGCTCGGGAAATCGAATCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAACA
Found at i:18460354 original size:198 final size:198
Alignment explanation
Indices: 18460014--18460370 Score: 437
Period size: 198 Copynumber: 1.8 Consensus size: 198
18460004 TGTCATTTTG
* ** *
18460014 TAAACAACATTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTATT
1 TAAACAACATTAGGTCTTTGAACTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGCCTATA
* *
18460079 GGACGAACTCCCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAAT
66 GGACGAACTACCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCAGTTCCTTAAAGTAAT
*
18460144 AAAGACGATCCATTCCTTCGAGCAATTTTTCGGTTCTAGTCCTAACTATCAAACTTGTTTGTCAT
131 AAAGACGATCCATTCCTTCGAACAATTTTTCGGTTCTAGTCCTAACTATCAAACTTGTTTGTCAT
18460209 TCA
196 TCA
* * ** *
18460212 TAAACAACTTTTA-GTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTCT
1 TAAACAAC-ATTAGGTCTTTGAACTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGCCTAT
** * * * * * * * * * * *
18460276 AGTCCGAACTATCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTAGTTGCTTAACGTAT
65 AGGACGAACTACCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCAGTTCCTTAAAGTAA
* ** *
18460341 TCAAGGTGATCCATTCCTTTGAACAATTTT
130 TAAAGACGATCCATTCCTTCGAACAATTTT
18460371 CTGAACATTC
Statistics
Matches: 129, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
198 126 0.98
199 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (198 bp):
TAAACAACATTAGGTCTTTGAACTAAAAACTTATTTACGTGAGAATCATTTCTCTCTTGCCTATA
GGACGAACTACCAAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCAGTTCCTTAAAGTAAT
AAAGACGATCCATTCCTTCGAACAATTTTTCGGTTCTAGTCCTAACTATCAAACTTGTTTGTCAT
TCA
Found at i:18461389 original size:430 final size:431
Alignment explanation
Indices: 18460200--18462308 Score: 2221
Period size: 430 Copynumber: 4.9 Consensus size: 431
18460190 TATCAAACTT
*
18460200 GTTTGTCA-TTCATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
1 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * *
18460264 TCTCTTGGTTCTAGTCCGAACTATCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTAGT
66 TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * * * * * * *
18460329 TGCTTAACGTATTCAAGGTGATCCATTCCTTTGAACAA-TTTTCTGAACATTCCAAGTTCGGGAA
131 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTTC-AAACTTTTCAGGCTCGGGAA
* * * *
18460393 ATCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAGACAAATTTTGTTCTTTGAATTAAAAAC
195 ATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* *
18460458 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTGTCGAACTACCGAACTTGTCAAACTTTTA
260 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTT-CCGAACTACCGAACTTGTCAAACTTTTA
* * * * * *
18460523 CGGTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGAC-CTCCCATTCATTCGAGCAATCTT
324 CGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAATTTT
* ** * *
18460587 TCGAGCATTCCATGCTCGAGAAATTGCATCATTTGGTCTAACTA
388 TCGAACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
* * * * **
18460631 GTTTGGCATTTTGT--A-AAC--TTCGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTTC
1 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* ** ** * * * * **
18460691 ACTCTTGGCCCTTGGACGAACTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACTTTGGT
66 TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * ** * ** * * *
18460756 TCCTTAAAGCATTCAAGACT-ATCCATTCCCTCGAGCAATTTTT-TGAGTAGTCCGTACTCGAGA
131 TCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGAACAATTTTTCAAACTTTTCAG-GCTCGGGA
* * *
18460819 AATCGA-ATCTTTTGGTCTAAATAGTTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAA
194 AATC-ACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
18460883 ACTTATTTATGTGAGAATTGTTTCTCTCAT-GTTCTTGTCCGAACTTCCAAACTTTTCAATCTTT
258 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCT-TCCGAACTACCGAACTTGTCAAACTTT
* ** * * * *
18460947 TACGAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTCAAGACGATCCAATCCTTGGAGCAATTT
322 TACGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
** * * * **
18461012 TTCGAACATTCCATGCTTGGGGAGTTGCATCATTTTCTCTAAATA
387 TTCGAACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
* *
18461057 TTTTTTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCATTTC
1 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * *
18461121 CCTCTTGGTTCTTGTCTGAACTTTCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGT
66 TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * *
18461186 TCCTTAAAGTA-TCAAAATGATCTATGCCTTCGAATAATTTTTCAAACTTTTCAGGCTCGGGAAA
131 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTTCAAACTTTTCAGGCTCGGGAAA
* * *
18461250 TCACGTCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAACTTTTGGTCTTTGACA-TGAAAA
196 TCACATCATTTGGTCTAAATAGTT-TGTCAATTTGTAAACAACTTTTGGTCTTTGA-ATTAAAAA
* * * * *
18461313 CTTATTTACGTGTGAATTATTTCTCTCTTGATTCCCTTCCAAACTACCGAAGTTGTCAAACTTTT
259 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CCTTCCGAACTACCGAACTTGTCAAACTTTT
* * * *
18461378 GCGATTTCTTTTATGACTTTAGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAA-TTT
323 ACGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
18461442 TCGAACA-TCCATGCTTAGGAAATCGCATCATTTGGTCTAAATA
388 TCGAACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
* * * * * **
18461485 GTTTATCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
1 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* ** * * * * *
18461550 TCTCTTGGTTCTTGGCCGAACTTTTGAACTTATCAAAATTTTACGACTCCTTTTATAACTTCAAT
66 TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* * * * * * * * * * *
18461615 TCCCTAAAGTATCCAAGATGACCCATTCATTCGAGCAATATTCCGAACATTAT-ATGCTCGGCAA
131 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTTCAAAC-TTTTCAGGCTCGGGAA
* * * *
18461679 AT-AGAATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAA
195 ATCA-CATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * * *** * ** *
18461743 GTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGACTTTCGAACTTTTCAAACTTTT
259 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-CTTCCGAACTACCGAACTTGTCAAACTTTT
* * * * * * * *
18461808 ATGAGTTCTTTCAAAACTTCGGTTCCTTAAAATATTCAAGACTATCAATTCCTTCGAGCAATTTT
323 ACGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
18461873 TCGAACATTCCATGCTTAAGAAATCGCAGT-ATTTTGTCTAAATA
388 TCGAACATTCCATGCTTAAGAAATCGCA-TCATTTGGTCTAAATA
* * * *
18461917 CTTTGTCATTTTATAAACAACTTTTAGCCTTTGAATTAAAAAGTTATTTTCGTGAGAATCATTTC
1 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * *
18461982 TCTCTTGGTTCTTATCTGAAGTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
66 TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
* ** * * * *
18462047 TCATTAATTTATTCAAGATGCTCCATTCCTTCTAACAATTTTTTGAAAATTTT-AGGCTCGGGAA
131 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTTCAAACTTTTCAGGCTCGGGAA
* * ** * * *
18462111 ATCCCATCATTTGGTCTAAATAGTTCGTCAATTTGTAAACAAAATTGGGTCTTTGTATTAAGAAC
195 ATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * *
18462176 TTATTTACGTGAGAATTCTTTCTCTCTTGGTTCCTTGCCAAACAACCGAACTTGTCAAACTTTTA
260 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTT-CCGAACTACCGAACTTGTCAAACTTTTA
* * * * *
18462241 CGATTTCTTTCATAAATTTGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGTG-AAATTTT
324 CGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
18462305 CGAA
389 CGAA
18462309 TGATAAGTGC
Statistics
Matches: 1356, Mismatches: 290, Indels: 64
0.79 0.17 0.04
Matches are distributed among these distances:
426 127 0.09
427 209 0.15
428 74 0.05
429 212 0.16
430 348 0.26
431 50 0.04
432 330 0.24
433 6 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (431 bp):
GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
TCTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTTCAAACTTTTCAGGCTCGGGAAA
TCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTCCGAACTACCGAACTTGTCAAACTTTTACG
ATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
AACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
Found at i:18462766 original size:25 final size:23
Alignment explanation
Indices: 18462725--18462771 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
18462715 ACAATTAGGG
18462725 AATTATTGTTTAGATTTAATTTT
1 AATTATTGTTTAGATTTAATTTT
*
18462748 AATTATCTTTTTAGAATTTAATTT
1 AATTAT-TGTTTAG-ATTTAATTT
18462772 GGATCCAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTTT
Found at i:18471127 original size:303 final size:303
Alignment explanation
Indices: 18470322--18471231 Score: 1500
Period size: 304 Copynumber: 3.0 Consensus size: 303
18470312 GTGTCCCTCG
*
18470322 TATGGATGATGATCCTTTGGTTACTACTAGTTGT--GTAATATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
* *
18470385 AATTCCAGAATTTCATGGAAGGAATGGTCGAGAGACTTATTGTGTTGGAAAAGTTAATCATAAAT
66 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
* * *
18470450 TAGTTTGTCAATCCAAGGCAAGTTGGCCAAACAAAAGGAGCAATACAATTGAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGAAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
* *
18470515 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCTAGC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
18470580 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
261 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
* *
18470623 TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGACAATTTTTTTTAGCTAAATCAAAGTTTT
1 TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGGCAA-TATTTTTAGCTAAATCAAAGTTTT
* * * * *
18470688 CAATTCCAAAATTTCATAGAAGGAATGGTCAAAAGACTTATTGTGATGGAAAAATTAATAATAAA
65 CAATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAA
* * * *
18470753 TTAGTTTGTTAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTAAGCTAGCACCTTT
130 TTAGTTTGTCAATCCAAGGGAAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTT
* *
18470818 TGTGTAATGTTATTGGTGTAGTTCATAAGATTATGAGAGTTTTCGATGTCCAATTCAATATCCAA
195 TGTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAA
*
18470883 CTAGAGAAGAAAGTAAATATGAATTTGCGCCTTTTGTTGACTCT
260 CTAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
* * *
18470927 TATGGATGATGATCATTTGGTTGCTACTAGTTGTGGGCAACATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
*
18470992 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGAGATGGAAAAGTTAATCATAAAT
66 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
*
18471057 TAGTTTGTCAATCCAAGGGTAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGAAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
* ** *
18471122 GTGTAATGTTATTGGTGTAGTTTAGAAGATCATGAGAGTTTTTTATGTCCAATTCAATATCGAAC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
* *
18471187 TAGAGAAAAAAGTAAGTATGTATTTGCGCCTTTTGTTGACTCT
261 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
18471230 TA
1 TA
18471232 CTCTGGTGGG
Statistics
Matches: 560, Mismatches: 46, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
301 34 0.06
303 246 0.44
304 280 0.50
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (303 bp):
TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
TAGTTTGTCAATCCAAGGGAAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
Found at i:18477438 original size:18 final size:18
Alignment explanation
Indices: 18477415--18477461 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
18477405 CTCTGGAACG
*
18477415 CACAAAAGACCTCGAAAA
1 CACAAAACACCTCGAAAA
18477433 CACAAAACACCTCGAAAA
1 CACAAAACACCTCGAAAA
*
18477451 CATAAAACACC
1 CACAAAACACC
18477462 ATCAGAGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.55, C:0.32, G:0.06, T:0.06
Consensus pattern (18 bp):
CACAAAACACCTCGAAAA
Found at i:18487972 original size:74 final size:73
Alignment explanation
Indices: 18487872--18488186 Score: 339
Period size: 74 Copynumber: 4.2 Consensus size: 73
18487862 AGGCCGACCT
***
18487872 TTAAAAATGGTTGGGATAGGTATTGTCTAAGGCAATCTTTTAAAAAAGGTTGGGATAGATCCGTC
1 TTAAAAA-GGTTGGGATAGACCTTGTCTAAGGCAA-CTTTTAAAAAAGGTTGGGATAGATCCGTC
18487937 TAAGGCAACC
64 TAAGGCAACC
* * *
18487947 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGAGATA-AACCTTGTC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGATCC--GTC
*
18488011 TAAAGCAACC
64 TAAGGCAACC
* * * *
18488021 TTAAAAAGGTTCGGATATACCTCTTGTCTAAGGCAAACTTTTAAAAAAGGTTGGGATAGACCCTT
1 TTAAAAAGGTTGGGATAGA-C-CTTGTCTAAGGC-AACTTTTAAAAAAGGTTGGGATAGATCCGT
**
18488086 CTAAGATAACC
63 CTAAGGCAACC
* * * **
18488097 TTAAAAAGGTTGGGATAGACTTTGTCTAAGTCAGCCTTTT-AAAAAGGTTGGGATAGACTTTGTC
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA-ACTTTTAAAAAAGGTTGGGATAGA-TCCGTC
18488161 TAA-GCAACC
64 TAAGGCAACC
*
18488170 TTTAAAAAAGTTTGGGA
1 -TT-AAAAAGGTTGGGA
18488187 ACATCCATTA
Statistics
Matches: 202, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
72 3 0.01
73 41 0.20
74 75 0.37
75 21 0.10
76 38 0.19
77 21 0.10
78 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (73 bp):
TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGATCCGTCTA
AGGCAACC
Found at i:18488007 original size:38 final size:38
Alignment explanation
Indices: 18487868--18488186 Score: 343
Period size: 38 Copynumber: 8.5 Consensus size: 38
18487858 GTTAAGGCCG
* ***
18487868 ACCTTTAAAAATGGTTGGGATAGGTATTGTCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
*
18487906 ATCTTTTAAAAAAGGTTGGGATAGATCC--GTCTAAGGCA
1 A-CCTTTAAAAAAGGTTGGGATAGA-CCTTGTCTAAGGCA
18487944 ACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
18487980 ACCTTTAAAAAAGGTTGAGATAAACCTTGTCTAAAGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
18488018 ACC-TT-AAAAAGGTTCGGATATACCTCTTGTCTAAGGCAA
1 ACCTTTAAAAAAGGTTGGGATAGA-C-CTTGTCTAAGGC-A
* * **
18488057 ACTTTTAAAAAAGGTTGGGATAGACCCT-TCTAAGATA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
18488094 ACC-TT-AAAAAGGTTGGGATAGACTTTGTCTAAGTCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
18488130 GCCTTTTAAAAAGGTTGGGATAGACTTTGTCTAA-GCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
*
18488167 ACCTTTAAAAAAGTTTGGGA
1 ACCTTTAAAAAAGGTTGGGA
18488187 ACATCCATTA
Statistics
Matches: 238, Mismatches: 29, Indels: 29
0.80 0.10 0.10
Matches are distributed among these distances:
34 2 0.01
35 36 0.15
36 40 0.17
37 30 0.13
38 87 0.37
39 25 0.11
40 3 0.01
41 15 0.06
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (38 bp):
ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
Found at i:18488070 original size:150 final size:150
Alignment explanation
Indices: 18487894--18488177 Score: 444
Period size: 150 Copynumber: 1.9 Consensus size: 150
18487884 GGGATAGGTA
* * *
18487894 TTGTCTAAGGCAATCTTTTAAAAAAGGTTGGGATAGATCCGTCTAAGGCAACCTTAAAAAGGTTG
1 TTGTCTAAGGCAAACTTTTAAAAAAGGTTGGGATAGACCCGTCTAAGACAACCTTAAAAAGGTTG
18487959 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGAGATAAACCTTGTCTAAAGCAACC-TT
66 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGAGATAAACCTTGTCT-AAGCAACCTTT
18488023 AAAAAGGTTCGGATATACCTC
130 AAAAAGGTTCGGATATACCTC
* *
18488044 TTGTCTAAGGCAAACTTTTAAAAAAGGTTGGGATAGACCCTTCTAAGATAACCTTAAAAAGGTTG
1 TTGTCTAAGGCAAACTTTTAAAAAAGGTTGGGATAGACCCGTCTAAGACAACCTTAAAAAGGTTG
* * * * * * *
18488109 GGATAGACTTTGTCTAAGTCAGCCTTTTAAAAAGGTTGGGATAGACTTTGTCTAAGCAACCTTTA
66 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGAGATAAACCTTGTCTAAGCAACCTTTA
18488174 AAAA
131 AAAA
18488178 AGTTTGGGAA
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
149 8 0.07
150 113 0.93
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.29
Consensus pattern (150 bp):
TTGTCTAAGGCAAACTTTTAAAAAAGGTTGGGATAGACCCGTCTAAGACAACCTTAAAAAGGTTG
GGATAGACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGAGATAAACCTTGTCTAAGCAACCTTTA
AAAAGGTTCGGATATACCTC
Found at i:18488841 original size:20 final size:19
Alignment explanation
Indices: 18488817--18488864 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
18488807 TTTTCGACTC
* *
18488817 AAATTAATTATTTTCTCTA
1 AAATTAATTAATTACTCTA
* *
18488836 ATAATTATTTAATTACTTTA
1 A-AATTAATTAATTACTCTA
18488856 AAATTAATT
1 AAATTAATT
18488865 TTTCAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (19 bp):
AAATTAATTAATTACTCTA
Found at i:18491108 original size:9 final size:9
Alignment explanation
Indices: 18491096--18491144 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
18491086 TTTTTATGCA
18491096 TTTTATAAT
1 TTTTATAAT
*
18491105 TTTTATGAT
1 TTTTATAAT
*
18491114 TTTAATAAAT
1 TTTTAT-AAT
*
18491124 TTTTACAAT
1 TTTTATAAT
*
18491133 ATTTATAAT
1 TTTTATAAT
18491142 TTT
1 TTT
18491145 GTTTTTATTT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
9 25 0.81
10 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18491109 original size:18 final size:19
Alignment explanation
Indices: 18491086--18491128 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
18491076 TAAAGGGTTT
18491086 TTTTTATGCATTTT-AT-AA
1 TTTTTATG-ATTTTAATAAA
18491104 TTTTTATGATTTTAATAAA
1 TTTTTATGATTTTAATAAA
18491123 TTTTTA
1 TTTTTA
18491129 CAATATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTTATGATTTTAATAAA
Found at i:18491140 original size:19 final size:17
Alignment explanation
Indices: 18491095--18491144 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
18491085 TTTTTTATGC
**
18491095 ATTTTATAATTTTTATG
1 ATTTTATAATTTTTACA
18491112 ATTTTAATAAATTTTTACA
1 ATTTT-AT-AATTTTTACA
18491131 ATATTTATAATTTT
1 AT-TTTATAATTTT
18491145 GTTTTTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 5 0.18
18 8 0.29
19 12 0.43
20 3 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
ATTTTATAATTTTTACA
Found at i:18491197 original size:19 final size:19
Alignment explanation
Indices: 18491152--18491197 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
18491142 TTTGTTTTTA
*
18491152 TTTTTTAATAAAATTAAAT
1 TTTTTTATTAAAATTAAAT
* *
18491171 ATTTTTATTAAAATTTAAT
1 TTTTTTATTAAAATTAAAT
18491190 TTTTTTAT
1 TTTTTTAT
18491198 AATTTTTGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTTATTAAAATTAAAT
Found at i:18506919 original size:3 final size:3
Alignment explanation
Indices: 18506902--18506939 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
18506892 TTCATAGTAA
*
18506902 AAT AA- AAT GAT AAT AAT AAT AAAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AA
18506940 AACATTGGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:18506929 original size:13 final size:13
Alignment explanation
Indices: 18506911--18506936 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18506901 AAATAAAATG
18506911 ATAATAATAATAA
1 ATAATAATAATAA
18506924 ATAATAATAATAA
1 ATAATAATAATAA
18506937 TAAAACATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAATAATAATAA
Found at i:18506930 original size:16 final size:16
Alignment explanation
Indices: 18506906--18506940 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
18506896 TAGTAAAATA
*
18506906 AAATGATAATAATAAT
1 AAATAATAATAATAAT
18506922 AAATAATAATAATAAT
1 AAATAATAATAATAAT
18506938 AAA
1 AAA
18506941 ACATTGGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:18509332 original size:215 final size:213
Alignment explanation
Indices: 18508146--18509860 Score: 1685
Period size: 215 Copynumber: 8.0 Consensus size: 213
18508136 TAGATTGTAG
* * * * * * *
18508146 AAGTTTGAAAAGTTCGAAAGTTCGGACAAGAACCAATAGAGAAACAATTCTTAGGTAAATAAATT
1 AAGTTTGACAAGTTCGGAAGTTC-GACCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
18508211 TTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTCAGACCAAATGATTTGATTTG
65 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-
** * * *
18508276 CCA-AGCATGGAATGTTCGGGAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTTAGGAACC
129 CCAGAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT
*
18508340 GAAATTATAAAAGAACTTGTAA
193 GAAATTATAAAAGAAC-TCTAA
* * * * * * *
18508362 AATTTTGAAAAGTTCGAAAGTTTGACCAAGAACAAAGAGAGAAACAATTCTCACATAAATTAGTT
1 AAGTTTGACAAGTTCGGAAGTTCGACC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
18508427 TTCAATTCAAAGACCAAAAGCTCTTTACAAAATGACAAACAATTTAAACCAAATGATGTTATTTC
65 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-
* * * * *
18508492 CCA-AGAATGGAATGTTCGAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAAC-C
129 CCAGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTG
* *
18508555 AAAGTTATAAAAGAAATCACAA
194 AAA-TTATAAAAGAACTC-TAA
* * * * * * *
18508577 AAGTTTGACAAGTTCGGTAGTTTGGCAAGGAACCAAGATAGAAA-ATTTCTCATGTAAATAAG-T
1 AAGTTTGACAAGTTCGGAAGTTCGACCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
18508640 TTTAATTCAAAGACCAAAATTTATTTACAAATTGACGAAA-TATTTAGACCAAATGATGCGATTT
65 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACCAAATGATGTGATTT
* ** * * * *
18508704 CCCGAGCAACGAATGTTCAAAAATTGCTCAAAGGAATGGATTGGCTTGAATACTTTAAGGAACAG
129 CCAGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTG
* *
18508769 AAGTTATAAAAGAAATC-ACA
194 AAATTATAAAAGAACTCTA-A
* * *** * *
18508789 AACGTTTGACAAGTTTGGTAGTTCGGTAAGGAACCAAGAGAGAAACAGTTCTCACATAAATAAGT
1 AA-GTTTGACAAGTTCGGAAGTTCGACCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
18508854 TTTTAATTCAAAGACCAAAAGTTGTTTACAAATTAACGAACTATTTAGACTAAAAGATGTGA-TT
64 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * *
18508918 CCTTGAGCCA-GGAATGTTTGAAAAATTGTTCGAAGGAATGTATCG-CTTTGAATACTTTAAGGA
129 CC-AGAG-CATGGAATG-TTCAAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGA
* *
18508981 A-TAGAAGAATA-AAAAAAACTCGTAA
190 ACT-GAA-ATTATAAAAGAACTC-TAA
* * * * * * *
18509006 CAGTTTGACCAA-TTTGAAATTTCGGACAAGAATCAAGAGAGAAACGATTCTCACGTAAATAAGT
1 AAGTTTGA-CAAGTTCGGAAGTTC-GACCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * **
18509070 TTTTAATTCAAAG-CCTAAAAGTTGTTTATAAAATGACAAACTATTTAGACGAAATGATGCAATT
64 TTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATT
* * *
18509134 TCTAGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATCGTCTTGAAAACTTTAAGGAAC
128 TCCAGAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
18509199 TGAAAATATTAAAGAACTCTAA
192 TGAAATTATAAAAGAACTCTAA
* * * * * * * *
18509221 AAGATTGAAAAGTTTGGAAGTTCGAACCGGCACCAAGAAAGAAACAATTCTAACATAAATAAGTT
1 AAGTTTGACAAGTTCGGAAGTTCG-ACCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
18509286 TTTAATTCAAAGACCAAAATTTGTTTAAAAAATGACAAACTATTTAGACCAAATGAAT-TGATTT
65 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGTGATTT
* * *
18509350 ACCA-AGCATGGAATGTTCAGAAAATTTCTCTATGGAATGGAT-GTCTTGAATACATTT-AGGAA
129 -CCAGAGCATGGAATGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAA
* *
18509412 CCGAAGTTATAAAAGAACTCGTAA
191 CTGAAATTATAAAAGAACTC-TAA
* *
18509436 AA-TTTAGACAAGTTCGGAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGT
1 AAGTTT-GACAAGTTCGGAAGTTCGACC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
18509500 TTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTTAGACCAAATAAAGTGATAT
64 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* ** * * *
18509565 CCCGAGCATGGAATGTTCGGAAATTACTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAA-TA
129 CCAGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-
* *
18509629 GAAGTTATAAAAGAAATC-ACA
193 GAAATTATAAAAGAACTCTA-A
* * * *
18509650 ACACTTTGACAAGTTCGGTAGTTCGACAAGCAACCAAGAGAGAAACAATTCTCAAGTAAATAAGT
1 A-AGTTTGACAAGTTCGGAAGTTCGACCAG-AACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
18509715 TTCTAATTCAAAGACCAAAATTTGTTTACAAATTGACAAACTATTTAGACCAAATGATATGATTT
64 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * * * * * *
18509780 CTCATG-TC-TGAAATATTCAAAAAATTGTTCGAAGAAATGGATCATCTTGAATACATTATGGAA
129 C-CA-GAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
*
18509843 CTAAAATTATAAAAGAAC
191 CTGAAATTATAAAAGAAC
18509861 CAAGAGAGAA
Statistics
Matches: 1249, Mismatches: 198, Indels: 104
0.81 0.13 0.07
Matches are distributed among these distances:
211 1 0.00
212 5 0.00
213 157 0.13
214 112 0.09
215 569 0.46
216 387 0.31
217 17 0.01
218 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (213 bp):
AAGTTTGACAAGTTCGGAAGTTCGACCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
AGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAA
ATTATAAAAGAACTCTAA
Found at i:18510314 original size:215 final size:215
Alignment explanation
Indices: 18509869--18511353 Score: 1345
Period size: 214 Copynumber: 6.9 Consensus size: 215
18509859 ACCAAGAGAG
* * * * * *
18509869 AAATGATGTGATTTCACGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * * * **
18509934 TACTTTATGGAA-ATGATGTTTTGAAAGAACTCA-TAAAAGTTTGATTAGTTC-GAAAGTT--GT
65 TACTTTAAGGAACCT-AAGTTATAAAAGAAC-AAGTAAAATTTTGACAAGTTCAG-AAGTTCAG-
* * * * * ** * * * *
18509994 CCAAGAGCCAAGAGAAAAACAATTCTCAC-GTAAATAAGACTTTAA-TCTGAAGGCCAAAAGTTG
126 CTAAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTC-AAAGACCAAAA-CTA
* *
18510057 TTTACAAAATGACCAACTATTTAGAAC
189 TTTACAAAATGACAAACTATTTAGACC
* * *
18510084 AATTGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAATGAATGGGTCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * *
18510149 TTCTTTATGGAACCTAAGTTATAAAAGAACAAGTAAAATTTTGAAAACTTCGGAAGTTTAGCTAA
65 TACTTTAAGGAACCTAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCTAA
* * ** *
18510214 GAACTAAGAGAGAAACAATTCCT-ACTATAAATAAGTTTTTAATTCAAAAAATAATACTATTTAC
130 GAACCAAGAGAGAAACAATT-CTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTAC
18510278 AAAATGACAAACTATTT-GACC
194 AAAATGACAAACTATTTAGACC
* * * * *
18510299 AAATGATGTGATTTCCTGAGCGTGGAATGTACAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * * * *
18510364 ATTTTAAGGATCCAAAGTTATAAAACAA-ATCGCAAAAGTTTGACAAGTTC-GATAGTTCAGC-A
66 ACTTTAAGGAACCTAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGA-AGTTCAGCTA
* ** ** *
18510426 AGGAACCAAGAGAGAAACAATTCTAACGTA-AAAAAAACTTTTAACTT-AAAGACCAACAGTTAC
129 A-GAACCAAGAGAGAAACAATTCTAAC-TATAAATAAGTTTTTAA-TTCAAAGACCAA-AACTAT
* *
18510489 TTACAAATTGACAAACTATTTAGACG
190 TTACAAAATGACAAACTATTTAGACC
* * * * * *
18510515 AAAAGATGTGATTTCACGAGCCTTGAATGTCCTAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * *
18510580 TATTTTAAGGAA-TTGATGTTATAAAAGAACTCA-TAATATTTTGACAAGTTC-GAAAGTTCAGC
65 TACTTTAAGGAACCT-AAGTTATAAAAGAAC-AAGTAAAATTTTGACAAGTTCAG-AAGTTCAGC
* * * *
18510642 TAAGAACCAAGAGAGATACAATTCTAAC-GTAAATTAGTTTTTAATTAAAAGACCAAAACTATTT
127 TAAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTT
* * **
18510706 ACAAAATGACAAACAATTTACAGA
192 ACAAAATGACAAACTATTTAGACC
* * * * * *
18510730 AAATGATGGGATTTCCCGAGCATTGAATGTTCAGAAATTGCTCGGAGGAATGGATCATCTTGAGT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * ** * * *
18510795 ACTTTAAGTAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTTAGAC-AA
66 ACTTTAAGGAACCTAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAG-CTAA
* * * * * * *
18510859 GAACCAAGAGAAAAACGATTCTCAC-GTAAATAAGGTTTTAATTCAAAGACCAAAAGTTGTTTA-
130 GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATTTAC
18510922 AAAATGACAAACTATTTAGA-C
194 AAAATGACAAACTATTTAGACC
*
18510943 AAGATGATGCGATTTCCCGCA-CATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTTTTG
1 AA-ATGATGCGATTTCCCG-AGCATGGAATGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTG
* * * ** *
18511007 AATACTTTAAGGAA-TTGAAGTTAGAATAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTCGGC
63 AATACTTTAAGGAACCT-AAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGC
* *
18511071 TAAGAACTAAGAGAGAAACAATTCTCACT-TAAATAAGTTTTTAATTCAAAGACCAAAACTATTT
127 TAAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTT
* * *
18511135 ACGAAATGAAAAACTATTTAGACA
192 ACAAAATGACAAACTATTTAGACC
* * *
18511159 AAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAGT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * * * * * *
18511224 AATTTAAGGAACCGAATTTATAAAAGAA-ATCGCAAAAGTTTGACAAGTTCGGTAGTTCGGC-AA
66 ACTTTAAGGAACCTAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGAAGTTCAGCTAA
* * * * *
18511287 GGAACCAAGAGA-AAATAATTCTCA-TGTAAATAAGTTTTTTATTCAAAGACCTAAAGCTATTTA
130 -GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACC-AAAACTATTTA
18511350 CAAA
193 CAAA
18511354 TTGATGAACA
Statistics
Matches: 1047, Mismatches: 179, Indels: 89
0.80 0.14 0.07
Matches are distributed among these distances:
212 1 0.00
213 46 0.04
214 390 0.37
215 385 0.37
216 97 0.09
217 123 0.12
218 5 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (215 bp):
AAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
ACTTTAAGGAACCTAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCTAAG
AACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACAA
AATGACAAACTATTTAGACC
Found at i:18510384 original size:214 final size:215
Alignment explanation
Indices: 18509869--18513396 Score: 1613
Period size: 215 Copynumber: 16.0 Consensus size: 215
18509859 ACCAAGAGAG
* * * * * *
18509869 AAATGATGTGATTTCACGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAATTGCTCGAAGGAATGGATCGTCTTGAA
* * ** * * * * * **
18509934 TACTTTATGGAAATGATGTTTTGAAAGAACTCA-TAAAAGTTTGATTAGTTC-GAAAGTT--GTC
65 TATTTTAAGGAACCGAAGTTATAAAAGAAC-AAGTAAAATTTTGACAAGTTCAG-AAGTTCAG-C
* * * * * ** * * * *
18509995 CAAGAGCCAAGAGAAAAACAATTCTCAC-GTAAATAAGACTTTAA-TCTGAAGGCCAAAAGTTGT
127 TAAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTC-AAAGACCAAAA-CTAT
* *
18510058 TTACAAAATGACCAACTATTTAGAAC
190 TTACAAAATGACAAACTATTTAGACC
* * * *
18510084 AATTGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAATGAATGGGTCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * *
18510149 T-TCTTTATGGAACCTAAGTTATAAAAGAACAAGTAAAATTTTGAAAACTTCGGAAGTTTAGCTA
65 TAT-TTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCTA
* * ** *
18510213 AGAACTAAGAGAGAAACAATTCCT-ACTATAAATAAGTTTTTAATTCAAAAAATAATACTATTTA
129 AGAACCAAGAGAGAAACAATT-CTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTA
18510277 CAAAATGACAAACTATTT-GACC
193 CAAAATGACAAACTATTTAGACC
* * * *
18510299 AAATGATGTGATTTCCTGAGCGTGGAATGTACAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * * *
18510364 ATTTTAAGGATCCAAAGTTATAAAACAA-ATCGCAAAAGTTTGACAAGTTC-GATAGTTCAGC-A
66 ATTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGA-AGTTCAGCTA
* ** ** *
18510426 AGGAACCAAGAGAGAAACAATTCTAACGTA-AAAAAAACTTTTAACTT-AAAGACCAACAGTTAC
129 A-GAACCAAGAGAGAAACAATTCTAAC-TATAAATAAGTTTTTAA-TTCAAAGACCAA-AACTAT
* *
18510489 TTACAAATTGACAAACTATTTAGACG
190 TTACAAAATGACAAACTATTTAGACC
* * * * * * *
18510515 AAAAGATGTGATTTCACGAGCCTTGAATGTCCTAAAAATTGCTCGAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAA
** * * *
18510580 TATTTTAAGGAATTGATGTTATAAAAGAACTCA-TAATATTTTGACAAGTTC-GAAAGTTCAGCT
65 TATTTTAAGGAACCGAAGTTATAAAAGAAC-AAGTAAAATTTTGACAAGTTCAG-AAGTTCAGCT
* * * *
18510643 AAGAACCAAGAGAGATACAATTCTAAC-GTAAATTAGTTTTTAATTAAAAGACCAAAACTATTTA
128 AAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTA
* * **
18510707 CAAAATGACAAACAATTTACAGA
193 CAAAATGACAAACTATTTAGACC
* * * * *
18510730 AAATGATGGGATTTCCCGAGCATTGAATGTTCAGAAATTGCTCGGAGGAATGGATCATCTTGAGT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * ** * * *
18510795 ACTTTAAGTAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTTAGAC-AA
66 ATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAG-CTAA
* * * * * * *
18510859 GAACCAAGAGAAAAACGATTCTCAC-GTAAATAAGGTTTTAATTCAAAGACCAAAAGTTGTTTA-
130 GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATTTAC
18510922 AAAATGACAAACTATTTAGA-C
194 AAAATGACAAACTATTTAGACC
*
18510943 AAGATGATGCGATTTCCCGCA-CATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTTTTG
1 AA-ATGATGCGATTTCCCG-AGCATGGAATGTTCAG-AAATTGCTCGAAGGAATGGATCGTCTTG
* ** * * ** *
18511007 AATACTTTAAGGAATTGAAGTTAGAATAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTCGGCT
63 AATATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCT
* *
18511072 AAGAACTAAGAGAGAAACAATTCTCACT-TAAATAAGTTTTTAATTCAAAGACCAAAACTATTTA
128 AAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTA
* * *
18511136 CGAAATGAAAAACTATTTAGACA
193 CAAAATGACAAACTATTTAGACC
* *
18511159 AAATGATGCGATTTCCCGAGCATAGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAG
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * * * *
18511223 TAATTTAAGGAACCGAATTTATAAAAGAA-ATCGCAAAAGTTTGACAAGTTCGGTAGTTCGGC-A
65 TATTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGAAGTTCAGCTA
* * * * *
18511286 AGGAACCAAGAGA-AAATAATTCTCA-TGTAAATAAGTTTTTTATTCAAAGACCTAAAGCTATTT
129 A-GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACC-AAAACTATTT
*
18511349 ACAAATTGATGAACATAACTTTTTAATTTAAAGACT
192 ACAAA---ATG-ACA-AAC----T-ATTT--AGACC
* * ** ** * * * * **
18511385 AATTG-T-TG-TTT--ATAAAATGACAAACTATTTAGACAATATGATGCGATTCCTTGAGCGA-G
1 AAATGATGCGATTTCCCGAGCATG--GAA-TGTTCAGA-AAT-TGCT-CGA-------AGGAATG
* * ** * * *
18511444 GAAT-GT-TCGAAAATTTGTTTGAAGGAATGGATCATCTTAAATACTTTAAGGATCCAAAGTTTC
53 G-ATCGTCTTG--AATAT-TTT-AAGGAACCGA--A-GTT--ATA----AAAGA-AC-AAG--T-
** * * * * * * *
18511507 GAAAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTATGAACTAGGAGAGAAACAATT-T
99 -AAA-ATTTTG-ACAA-GTTCAGAAGTTC---A-----GCTAAGAACCAAGAGAGAAACAATTCT
** ** * *
18511571 TCCCGTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGACAAACTATTTAGACA
152 AACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACAAAATGACAAACTATTTAGACC
* * * *
18511635 AAATGATGTGATTTCCCGAGCATAGAATGTTCAGAAATTGCTCGAACGAATGGATCGTCTTGAGT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * ** * *
18511700 -TATTTAAGGAACCGAATTTATAAAAGAA-ATCGTAAAAGTTTGACAAGTTTGGTAGTTC-GGTA
66 AT-TTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGAAGTTCAGCTA
* * * * * *
18511762 AGGAACCAAGAGA-AAATAATTCTCAC-GTAAATAAGTTTTTAATTAAAAGACCTAAAGCTGTTT
129 A-GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACC-AAAACTATTT
* *
18511825 ACAAATTGACGAACATAACTTTTTAATTTAAAGACT
192 ACAAA---ATG-ACA-AAC----T-ATTT--AGACC
* * ** ** * * * * *
18511861 AATTG-T-TG-TTT--ATAAAATGACAAACTATTTAGACAATATGATGCGATTCACAGAGCGA-G
1 AAATGATGCGATTTCCCGAGCATG--GAA-TGTTCAGA-AAT-TGCT-CG----A-AG-G-AATG
* * ** *
18511920 GAAT-GT-TCGAAAATTTGTTCGAAGGAATGGATTGTCTTAAATACTTTAAGGATCCAAAGTTTT
53 G-ATCGTCTTGAATA-TT-TT--AAGGAACCGA-AG---T---TA---T----A---AAAG----
* * ** *
18511983 AAAAGAACTTGTAAAATTTTAACAAGTTCAGAAGTTTGGCTAAGAACCATGAGAGAAACAATTCT
92 --AACAA---GTAAAATTTTGACAAGTTCAGAAGTTCAGCTAAGAACCAAGAGAGAAACAATTCT
* * *
18512048 --CTCGTAAATAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGAGAAACTATTTAGAT
152 AACT-ATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATTTACAAAATGACAAACTATTTAGAC
18512111 C
215 C
* * * * ** *
18512112 AAATGATGTGATTTCTCGAGCAAGGAATGTTCAAAAATTGCTCGAAGGAATAAATCGGCTTGAAT
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * * *
18512177 -TCTTTAAGAAACCGAAGTTATAAAAG-A-AA-TCACA-----A-ATGTT-TG--G--CA---AG
66 AT-TTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCTAA
* * * *
18512224 GAACCAAGAGAGAAAAAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACCAAAAGT-TGCTTA
130 GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTAT--TTA
* * * *
18512287 CAAATTCACGAACTATTTAGACT
193 CAAAATGACAAACTATTTAGACC
* * * * * * * *
18512310 AAAAGATGTGATTTCCCGAGCCTGGAATGTTTGAAAAATTGTTCGAAGGAATGGATCATTTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATG-TTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *** * * * * *
18512375 TACTTTAAGGAACCGAA-TATATAAAAGAACTCTTAAAAGTTTGACCAGTT-TGAAATTTCGAAC
65 TATTTTAAGGAACCGAAGT-TATAAAAGAACAAGTAAAATTTTGACAAGTTCAG-AAGTTC-AGC
* * * * * * * *
18512438 -AAGAACCAAGTGACAAACGATTCTCAC-ATAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTT
127 TAAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATT
* * **
18512501 TATAAAATGACAAGCTATTTAGATG
191 TACAAAATGACAAACTATTTAGACC
* ** * *
18512526 AAATGATACGATTTCCAAAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * ** ** ** * ** **
18512591 AACTTTAAGGAACCAAAAATATAAAAGAACTCGTAAAAGATTGAAAAGTTTGGAAGTTTGGAC-A
65 TATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAG-CTA
* * * * *
18512655 AGCACCAAGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
129 AGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATTTA
*
18512719 AAAAATGACAAACTATTTAGACC
193 CAAAATGACAAACTATTTAGACC
* * * * * *
18512742 AAAAGATGTGATTTCCTGAGCATGGATTATTC-GAAGAATTGCTCGAAGGAATGGATTGTCTTGA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAG-A-AATTGCTCGAAGGAATGGATCGTCTTGA
** * * * ** * ** * * *
18512806 ATGCTTTAAGGAACTGAAGTTTTGAAAGAACTCGTAAAAGTTTGACAAGTTTGGAGGTT-TGTCC
64 ATATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAG-CT
* * * * *
18512870 AAGAGCCAAGAGTGAAACAATTCTCACT-TAAATACGTTTTTAATTCAAAGACCAAAAGT-TGTT
128 AAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTAT-TT
* *
18512933 AACAAAATGATAAACAATTTAGACC
192 -ACAAAATGACAAACTATTTAGACC
* * ** * * *
18512958 AAATGTTACGATTTCAAGAGCATGGAATGTTTTA-AAATTTCTCGAAGGAATGGATCATCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATG-TTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * ** * **
18513022 TATTTTAAGGAACAGAAGTTCTAAAAGAA-ATCGCAAAAGGTTGACAAGTTCGGTTGTTC-GAC-
65 TATTTTAAGGAACCGAAGTTATAAAAGAACA-AGTAAAATTTTGACAAGTTCAGAAGTTCAG-CT
* * * *
18513084 AAGGAACCAAGAGAGAAACAATTCTCA-TATAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTT
128 AA-GAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAA-CTATT
* **
18513148 TACAAATTGATGAACTATTTAGACC
191 TACAAAATGACAAACTATTTAGACC
* * * * * * * * * *
18513173 AAAAGATACGATTTCTCGTGCCTGGAATGTTCAAAAATTTGTTCAAAGAAATGGGTCGTCTTGAA
1 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAA-TTGCTCGAAGGAATGGATCGTCTTGAA
** * * *
18513238 TATTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAATTTTTACTAGTTC-GAAAGATCAGAC-
65 TATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAG-AAGTTCAG-CT
* *** * * * *** *
18513300 GAGAACCAAGAGAGAAATGGTTCTCA-TGTAAATAAGTTTTTAATTCAAAGACTAACTGTTGTTT
128 AAGAACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAA-AACTATTT
* * * *
18513364 ATAAAATGACAAACTACTTAAACA
192 ACAAAATGACAAACTATTTAGACC
18513388 AAATGATGC
1 AAATGATGC
18513397 ATTAAAAACT
Statistics
Matches: 2559, Mismatches: 518, Indels: 472
0.72 0.15 0.13
Matches are distributed among these distances:
196 1 0.00
197 1 0.00
198 97 0.04
199 50 0.02
200 2 0.00
202 3 0.00
203 1 0.00
205 1 0.00
206 4 0.00
207 2 0.00
208 5 0.00
212 4 0.00
213 82 0.03
214 425 0.17
215 654 0.26
216 592 0.23
217 134 0.05
218 11 0.00
219 6 0.00
221 6 0.00
222 7 0.00
223 15 0.01
224 29 0.01
225 12 0.00
226 22 0.01
227 7 0.00
228 1 0.00
229 1 0.00
231 6 0.00
232 6 0.00
233 10 0.00
234 15 0.01
235 6 0.00
236 16 0.01
237 3 0.00
238 2 0.00
239 2 0.00
240 10 0.00
241 14 0.01
242 6 0.00
243 12 0.00
244 5 0.00
245 10 0.00
246 2 0.00
247 1 0.00
248 1 0.00
249 3 0.00
250 14 0.01
251 17 0.01
252 20 0.01
253 24 0.01
254 13 0.01
255 3 0.00
256 3 0.00
257 3 0.00
258 6 0.00
259 7 0.00
260 3 0.00
261 1 0.00
262 59 0.02
263 81 0.03
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (215 bp):
AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCTTGAAT
ATTTTAAGGAACCGAAGTTATAAAAGAACAAGTAAAATTTTGACAAGTTCAGAAGTTCAGCTAAG
AACCAAGAGAGAAACAATTCTAACTATAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACAA
AATGACAAACTATTTAGACC
Found at i:18510784 original size:963 final size:962
Alignment explanation
Indices: 18509039--18510823 Score: 2207
Period size: 963 Copynumber: 1.9 Consensus size: 962
18509029 GGACAAGAAT
* * ** *
18509039 CAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTAATTCAAAGCCTAAAAGTTGTTTATAAAAT
1 CAAGAGAAAAACAATTCTCACGTAAATAAGACTTTAATTCAAAGCCTAAAAGTTGTTTACAAAAT
* *
18509104 GACAAACTATTTAGACGAAATGATGCAATTTCTAGAGCATGGAATGTTCAAAAAATTGCTTGAAG
66 GACAAACTATTTAGACGAAATGATGCAATTTCCAGAGCATGGAATGTTCAAAAAATTGCTCGAAG
* * *
18509169 GAATGGATCGTCTTGAAAACTTTAAGGAACTGAAAATATTAAAGAACTCTAAAAGATTGAAAAGT
131 GAATGGATCGTCTTGAAAACTTTAAGGAACTGAAAATATAAAAGAACACTAAAAGATTGAAAACT
* ** *
18509234 TTGGAAGTTCGAACCGGCACCAAGAAAGAAACAATTCTAACATAAATAAGTTTTTAATTCAAAGA
196 TCGGAAGTTCGAACAAGAACCAAGAAAGAAACAATTCTAACATAAATAAGTTTTTAATTCAAAGA
* *
18509299 CCAAAATTTGTTTAAAAAATGACAAACTATTTAGACCAAATGAATTGATTTACCAAGCATGGAAT
261 -CAAAATCTATTTAAAAAATGACAAACTATTTAGACCAAATGAATTGATTTACCAAGCATGGAAT
* * * * * *
18509364 GTTCAGAAAATTTCTCTATGGAATGGATGTCTTGAATACATTTAGGAACCGAAGTTATAAAAGAA
325 GTACAGAAAATTGCTCGAAGGAATGGATGTCTTGAATACATTTAGGAACCAAAGTTATAAAACAA
* * * *
18509429 CTCGTAAAATTTAGACAAGTTCGGAAGTTCGGCCAAGAACCAAAAGAGAAACAATTCTCACGTAA
390 ATCGCAAAATTTAGACAAGTTCGGAAGTTCAGCCAAGAACCAAAAGAGAAACAATTCTAACGTAA
* ** *
18509494 ATAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTTAGACCAAATAAAG
455 AAAAACTTTTAATTCAAAGACCAAAAGCTACTTACAAAATGACAAACTATTTAGACCAAATAAAG
* * ** *
18509559 TGATATCCCGAGCATGGAATGTTCGGAAATTACTCAAAGGAATGGATTGTCTTGAATACTTTAAG
520 TGATATCACGAGCATGGAATGTCCAAAAATTACTCAAAGGAATGGATCGTCTTGAATACTTTAAG
**
18509624 GAATAGAAGTTATAAAAGAAATCACAACACTTTGACAAGTTCGGTAGTTCGACAAGCAACCAAGA
585 GAATAGAAGTTATAAAAGAAATCACAACACTTTGACAAGTTCGAAAGTTCGACAAGCAACCAAGA
* * * *
18509689 GAGAAACAATTCTCAAGTAAATAAGTTTCTAATTCAAAGACCAAAATTTGTTTACAAATTGACAA
650 GAGAAACAATTCTCAAGTAAATAAGTTTCTAATTAAAAGACCAAAATCTATTTACAAAATGACAA
* * * * * *
18509754 ACTATTTAGACCAAATGATATGATTTCTCATGTCTGAAATATTCAAAAAATTGTTCGAAGAAATG
715 ACAATTTACACAAAATGATAGGATTTCCCATGTCTGAAATATTCAAAAAATTGCTCGAAGAAATG
* *
18509819 GATCATCTTGAATACATTATGGAACTAAAATTATAAAAGAACCAAGAGAGAAATGATGTGATTTC
780 GATCATCTTGAATACATTAAGGAACCAAAATTATAAAAGAACCAAGAGAGAAATGATGTGATTTC
18509884 ACGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTATGGAAATG
845 ACGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTATGGAAATG
18509949 ATGTTTTGAAAGAACTCATAAAAGTTTGATTAGTTCGAAAGTTGTCCAAGAGC
910 ATGTTTTGAAAGAACTCATAAAAGTTTGATTAGTTCGAAAGTTGTCCAAGAGC
* *
18510002 CAAGAGAAAAACAATTCTCACGTAAATAAGACTTTAATCTGAAGGCC-AAAAGTTGTTTACAAAA
1 CAAGAGAAAAACAATTCTCACGTAAATAAGACTTTAAT-TCAAAGCCTAAAAGTTGTTTACAAAA
* * * *
18510066 TGACCAACTATTTAGAAC-AATTGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGA
65 TGACAAACTATTTAG-ACGAAATGATGCAATTTCCAGAGCATGGAATGTTCAAAAAATTGCTCGA
* * ** * ** * **
18510130 ATGAATGGGTCGTCTTGAATTCTTTATGGAACCT-AAGTTATAAAAGAACAAGTAAAATTTTGAA
129 AGGAATGGATCGTCTTGAAAACTTTAAGGAA-CTGAAAATATAAAAGAAC-ACTAAAAGATTGAA
* * * *
18510194 AACTTCGGAAGTT-TAGCTAAGAACTAAGAGAGAAACAATTCCT-ACTATAAATAAGTTTTTAAT
192 AACTTCGGAAGTTCGAAC-AAGAACCAAGAAAGAAACAATT-CTAAC-ATAAATAAGTTTTTAAT
* *
18510257 TCAAA-A-AATAATACTATTTACAAAATGACAAACTATTT-GACCAAATG-ATGTGATTT-CCTG
254 TCAAAGACAA-AAT-CTATTTAAAAAATGACAAACTATTTAGACCAAATGAAT-TGATTTACC-A
* * *
18510317 AGCGTGGAATGTACAG-AAATTGCTCGAAGGAATGGATCGTCTTGAATA-TTTTAAGGATCCAAA
315 AGCATGGAATGTACAGAAAATTGCTCGAAGGAATGGAT-GTCTTGAATACATTT-AGGAACCAAA
*
18510380 GTTATAAAACAAATCGCAAAAGTTT-GACAAGTTC-GATAGTTCAG-CAAGGAACCAAGAGAGAA
378 GTTATAAAACAAATCGCAAAA-TTTAGACAAGTTCGGA-AGTTCAGCCAA-GAACCAAAAGAGAA
* * *
18510442 ACAATTCTAACGTAAAAAAAACTTTTAACTT-AAAGACCAACAGTTACTTACAAATTGACAAACT
440 ACAATTCTAACGT-AAAAAAACTTTTAA-TTCAAAGACCAAAAGCTACTTACAAAATGACAAACT
* * * * * * *
18510506 ATTTAGACGAAA-AGATGTGATTTCACGAGCCTTGAATGTCCTAAAAATTGCTCGAAGGAATGGA
503 ATTTAGACCAAATA-AAGTGATATCACGAGCATGGAATGTCC-AAAAATTACTCAAAGGAATGGA
* * * * * * *
18510570 TCGTCTTGAATATTTTAAGGAATTGATGTTATAAAAGAACTCATAATATTTTGACAAGTTCGAAA
566 TCGTCTTGAATACTTTAAGGAATAGAAGTTATAAAAGAAATCACAACACTTTGACAAGTTCGAAA
* * *
18510635 GTTC-AGCTAAG-AACCAAGAGAGATACAATTCT-AACGTAAATTAGTTTTTAATTAAAAGACCA
631 GTTCGA-C-AAGCAACCAAGAGAGAAACAATTCTCAA-GTAAATAAGTTTCTAATTAAAAGACCA
* *
18510697 AAA-CTATTTACAAAATGACAAACAATTTACAGAAAATGATGGGATTTCCCGA-G-CATTG-AAT
693 AAATCTATTTACAAAATGACAAACAATTTACACAAAATGATAGGATTTCCC-ATGTC--TGAAAT
* * * * * * * *
18510758 GTTC-AGAAATTGCTCGGAGGAATGGATCATCTTGAGTACTTTAAGTAACCAAAGTTATAAAAGA
755 ATTCAAAAAATTGCTCGAAGAAATGGATCATCTTGAATACATTAAGGAACCAAAATTATAAAAGA
18510822 AC
820 AC
18510824 TCGTAAAAGT
Statistics
Matches: 691, Mismatches: 105, Indels: 52
0.81 0.12 0.06
Matches are distributed among these distances:
962 32 0.05
963 307 0.44
964 195 0.28
965 154 0.22
966 3 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (962 bp):
CAAGAGAAAAACAATTCTCACGTAAATAAGACTTTAATTCAAAGCCTAAAAGTTGTTTACAAAAT
GACAAACTATTTAGACGAAATGATGCAATTTCCAGAGCATGGAATGTTCAAAAAATTGCTCGAAG
GAATGGATCGTCTTGAAAACTTTAAGGAACTGAAAATATAAAAGAACACTAAAAGATTGAAAACT
TCGGAAGTTCGAACAAGAACCAAGAAAGAAACAATTCTAACATAAATAAGTTTTTAATTCAAAGA
CAAAATCTATTTAAAAAATGACAAACTATTTAGACCAAATGAATTGATTTACCAAGCATGGAATG
TACAGAAAATTGCTCGAAGGAATGGATGTCTTGAATACATTTAGGAACCAAAGTTATAAAACAAA
TCGCAAAATTTAGACAAGTTCGGAAGTTCAGCCAAGAACCAAAAGAGAAACAATTCTAACGTAAA
AAAACTTTTAATTCAAAGACCAAAAGCTACTTACAAAATGACAAACTATTTAGACCAAATAAAGT
GATATCACGAGCATGGAATGTCCAAAAATTACTCAAAGGAATGGATCGTCTTGAATACTTTAAGG
AATAGAAGTTATAAAAGAAATCACAACACTTTGACAAGTTCGAAAGTTCGACAAGCAACCAAGAG
AGAAACAATTCTCAAGTAAATAAGTTTCTAATTAAAAGACCAAAATCTATTTACAAAATGACAAA
CAATTTACACAAAATGATAGGATTTCCCATGTCTGAAATATTCAAAAAATTGCTCGAAGAAATGG
ATCATCTTGAATACATTAAGGAACCAAAATTATAAAAGAACCAAGAGAGAAATGATGTGATTTCA
CGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTATGGAAATGA
TGTTTTGAAAGAACTCATAAAAGTTTGATTAGTTCGAAAGTTGTCCAAGAGC
Found at i:18511094 original size:429 final size:425
Alignment explanation
Indices: 18509869--18513351 Score: 1734
Period size: 431 Copynumber: 7.9 Consensus size: 425
18509859 ACCAAGAGAG
* * * *
18509869 AAATGATGTGATTTCACGAGCATTGAATGTTAAGAAAATTGCTCGAAGGAATGGATCTTGTTGAA
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* *** * * * * ** **
18509934 TACTTTATGGAAATGATGTTTTGAAAGAACTCATAAAAGTTTGATTAGTTCGAAAGTT-GTCCAA
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTTAG--CAA
* * * *
18509998 -GAGCCAAGAGAAAAACAATTCTCACGTAAATAAGACTTTAA-TCTGAAGGCCAAAAGTTGTTTA
129 GGAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTC-AAAGACCAAAAGTTGTTTA
* *
18510061 CAAAATGACCAACTATTTAGAACAATTGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGC
193 CAAAATGACAAACTATTTAG-ACAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGC
* * * * * *
18510126 TCGAATGAATGGGTCGTCTTGAATTCTTTATGGAACCT-AAGTTATAAAAGAACAAGTAAAATTT
256 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-TTGAAGTTATAAAAGAACTAGTAAAATTT
* * *
18510190 TGAAAACTTCGGAAGTTTAGCTAAGAACTAAGAGAGAAACAATTCCTACTATAAATAAGTTTTTA
320 TGACAAGTTC-GAAGTTCAGCTAAGAACTAAGAGAGAAACAATT-CTAC-ATAAATAAGTTTTTA
** * *
18510255 ATTCAAAA-AATAATACTATTTACAAAATGACAAACTATTTGAC-C
382 ATT-AAAAGACCAAAACTATTTACAAAATGACAAACTATTT-ACAA
* * * *
18510299 AAATGATGTGATTTCCTGAGCGTGGAATGTACAG-AAATTGCTCGAAGGAATGGATCGTCTTGAA
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * *
18510363 TATTTTAAGGATCCAAAGTTATAAAACAAATCGCAAAAGTTTGACAAGTTCGATAGTTCAGCAAG
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTT-AGCAAG
* * * * * **
18510428 GAACCAAGAGAGAAACAATTCTAACGTAAAAAAAACTTTTAACTT-AAAGACCAACAGTTACTTA
130 GAACCAAGAGAAAAACAATTCTCACGTAAATAAGA-TTTTAA-TTCAAAGACCAAAAGTTGTTTA
* * * * * * *
18510492 CAAATTGACAAACTATTTAGACGAAAAGATGTGATTTCACGAGCCTTGAATGTCCTAAAAATTGC
193 CAAAATGACAAACTATTTAGAC-AAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGC
* * *
18510557 TCGAAGGAATGGATCGTCTTGAATATTTTAAGGAATTGATGTTATAAAAGAACTCA-TAATATTT
256 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACT-AGTAAAATTT
* * * *
18510621 TGACAAGTTCGAAAGTTCAGCTAAGAACCAAGAGAGATACAATTCTAACGTAAATTAGTTTTTAA
320 TGACAAGTTCG-AAGTTCAGCTAAGAACTAAGAGAGAAACAATTCT-ACATAAATAAGTTTTTAA
*
18510686 TTAAAAGACCAAAACTATTTACAAAATGACAAACAATTTACAGA
383 TTAAAAGACCAAAACTATTTACAAAATGACAAACTATTTACA-A
* * * *
18510730 AAATGATGGGATTTCCCGAGCATTGAATGTTCAG-AAATTGCTCGGAGGAATGGATCATCTTGAG
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * *
18510794 TACTTTAAGTAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTTAGACAA
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAG-TTAG-CAA
* *
18510859 -GAACCAAGAGAAAAACGATTCTCACGTAAATAAGGTTTTAATTCAAAGACCAAAAGTTGTTTA-
129 GGAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAC
18510922 AAAATGACAAACTATTTAGACAAGATGATGCGATTTCCCGCA-CATGGAATGTTCAGAAAATTGC
194 AAAATGACAAACTATTTAGACAA-ATGATGCGATTTCCCG-AGCATGGAATGTTCA-AAAATTGC
* * * *
18510986 TCGAAGGAATGGATCGTTTTGAATACTTTAAGGAATTGAAGTTAGAATAGAACTTGTAAAATTTT
256 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTAGTAAAATTTT
* *
18511051 GACAAGTTCAGAAGTTCGGCTAAGAACTAAGAGAGAAACAATTCTCACTTAAATAAGTTTTTAAT
321 GACAAGTTC-GAAGTTCAGCTAAGAACTAAGAGAGAAACAATTCT-ACATAAATAAGTTTTTAAT
* * * *
18511116 TCAAAGACCAAAACTATTTACGAAATGAAAAACTATTTAGACA
384 TAAAAGACCAAAACTATTTACAAAATGACAAACTATTTACA-A
* * *
18511159 AAATGATGCGATTTCCCGAGCATAGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAG
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * ** *
18511223 TAATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGTAGTTCGGCAAG
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTT-AGCAAG
* * * * * * *
18511288 GAACCAAGAG-AAAATAATTCTCATGTAAATAAGTTTTTTATTCAAAGACCTAAAGCTATTTACA
130 GAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACA
* * ** ** * *
18511352 AATTGATGAACATAACTTTTTAATTTAAAGACTAAT--TGTTG-TTT--ATAAAATGACAAACTA
195 AA---ATG-ACA-AAC----T-ATTT--AGACAAATGATG-CGATTTCCCGAGCATG--GAA-TG
* * **
18511412 TTTAGACAATATGATGCGATTCCTTG-AGCG-A-GGAAT-GT-TCGAAAATTTGTTTGAAGGAAT
244 TTCA-A-AA-AT--TGC---T-C--GAAG-GAATGG-ATCGTCTTG--AA-TACTTT-AAGGAAT
* *** * * * * * * *
18511472 GGATCATCTTAAA-TACTTTAAGGATCCAAAGTTTCGA-AAGAACTT-GTAAAATTTTGACAAGT
292 TGAAGTTATAAAAGAAC--T-A-G-T-AAAATTTT-GACAAG---TTCG---AA-GTT--C-AGC
* * ** *** * * * *** * ***** *
18511534 TCAGAAGTTTG-GCTATG-AAC--TAGGAGAGAAACAA-TTTTCCCGTAAATAAGTTTTTAATTC
340 TAAGAACTAAGAG--A-GAAACAATTCTACATAAATAAGTTTT-TAATTAA-AAGACCAAAACT-
*** * *
18511594 AAAGACCAAAACT-ATTTACGAAATGACAAACTATTTAGACA
399 ATTTA-CAAAA-TGA--C----------AAACTATTTACA-A
* *
18511635 AAATGATGTGATTTCCCGAGCATAGAATGTTCAG-AAATTGCTCGAACGAATGGATCGTCTTGAG
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGA-
* * * * * ** * *
18511699 TTA-TTTAAGGAACCGAATTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGTAGTTCGGTAA
65 ATACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTT-AGCAA
* * * * *
18511763 GGAACCAAGAG-AAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCTAAAGCTGTTTAC
129 GGAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * ** ** *
18511827 AAATTGACGAACATAACTTTTTAATTTAAAGACTAAT--TGTTG-TTT--ATAAAATGACAAACT
194 AAA---ATG-ACA-AAC----T-ATTT--AGACAAATGATG-CGATTTCCCGAGCATG--GAA-T
* * * * * *
18511887 ATTTAGACAATATGATGCGATTC-ACAGAGCGA-GGAAT-GT-TCGAAAATTTGTTCGAAGGAAT
243 GTTCA-A-AA-AT--TGC---TCGA-AG-G-AATGG-ATCGTCTTGAATA-CT-TT------AA-
* * *
18511948 GGATTGTCTTAAATACTTTAAGGATCCAAAGTTTTAAAAGAACTTGTAAAATTTTAACAAGTTCA
287 -G---G------A-A--TT---G-----AAGTTATAAAAGAACTAGTAAAATTTTGACAAGTTC-
** * * * * *
18512013 GAAGTTTGGCTAAGAACCATGAGAGAAACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCA
330 GAAGTTCAGCTAAGAACTAAGAGAGAAACAATTCT-ACATAAATAAGTTTTTAATTAAAAGACCA
* * *
18512078 AAAGCTATTTACAAAATGAGAAACTATTTAGATC
394 AAA-CTATTTACAAAATGACAAACTATTTACA-A
* ** ** *
18512112 AAATGATGTGATTTCTCGAGCAAGGAATGTTCA-AAAATTGCTCGAAGGAATAAATCGGCTTGAA
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * *
18512176 TTCTTTAAGAAACCGAAGTTATAAAAGAAATCAC-AAA---T-----G-T------TTGGCAAGG
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTTAGCAAGG
* *
18512225 AACCAAGAGAGAAAA-AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGCTTACA
131 AACCAAGAGA-AAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * * * *
18512289 AATTCACGAACTATTTAGACTAAAAGATGTGATTTCCCGAGCCTGGAATGTTTGAAAAATTGTTC
195 AAATGACAAACTATTTAGAC-AAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAATTGCTC
* * ** ** *
18512354 GAAGGAATGGATCATTTTGAATACTTTAAGGAACCGAA-TATATAAAAGAACTCTTAAAAGTTTG
258 GAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGT-TATAAAAGAACTAGTAAAATTTTG
* * * * * * * *
18512418 ACCAGTTTGAAATTTCGAAC-AAGAACCAAGTGACAAACGATTCTCACATAAATAAGTTTTTAAT
322 ACAAGTTCG-AAGTTC-AGCTAAGAACTAAGAGAGAAACAATTCT-ACATAAATAAGTTTTTAAT
* * * * * * *
18512482 TCAAAA-ACTAAAAGTTGTTTATAAAATGACAAGCTATTTAGATG
384 T-AAAAGACCAAAA-CTATTTACAAAATGACAAACTATTTACA-A
** ** * * *
18512526 AAATGATACGATTTCCAAAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATCGTCTTGAA
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* ** * * * * * * *
18512591 AACTTTAAGGAACCAAAAATATAAAAGAACTCGTAAAAGATTGAAAAGTTTGGAAGTTTGGACAA
66 TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAG-TTAG-CAA
* * * *
18512656 -GCACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAA
129 GGAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * *
18512720 AAAATGACAAACTATTTAGACCAAAAGATGTGATTTCCTGAGCATGGATTATTCGAAGAATTGCT
194 AAAATGACAAACTATTTAGA-CAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCT
* * * * * * *
18512785 CGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACTGAAGTTTTGAAAGAACTCGTAAAAGTTTG
257 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTAGTAAAATTTTG
* * * * * * * * *
18512850 ACAAGTTTGGAGGTT-TGTCCAAGAGCCAAGAGTGAAACAATTCTCACTTAAATACGTTTTTAAT
322 ACAAG-TTCGAAGTTCAG-CTAAGAACTAAGAGAGAAACAATTCT-ACATAAATAAGTTTTTAAT
* * * * * *
18512914 TCAAAGACCAAAAGT-TGTTAACAAAATGATAAACAATTTAGACC
384 TAAAAGACCAAAACTAT-TT-ACAAAATGACAAACTATTTACA-A
* ** ** * ** * *
18512958 AAATGTTACGATTTCAAGAGCATGGAATGTT-TTAAAATTTCTCGAAGGAATGGATCATCTTGAA
1 AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * *** *
18513022 TATTTTAAGGAA-CAGAAGTTCTAAAAGAAATCGCAAAAGGTTGACAAGTTCGGTTGTTCGACAA
66 TACTTTAAGGAACCA-AAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTTAG-CAA
* ** * *
18513086 GGAACCAAGAGAGAAACAATTCTCATATAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTAC
129 GGAACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAC
* ** * * * * * *
18513151 AAATTGATGAACTATTTAGACCAAAAGATACGATTTCTCGTGCCTGGAATGTTCAAAAATTTGTT
194 AAAATGACAAACTATTTAGA-CAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAA-TTGCT
* * * * ** * *
18513216 CAAAGAAATGGGTCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAATTTTT
257 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTAGTAAAATTTTG
* * * * ***
18513280 ACTAGTTCGAAAGATCAGAC-GAGAACCAAGAGAGAAATGGTTCT-CATGTAAATAAGTTTTTAA
322 ACAAGTTCG-AAGTTCAG-CTAAGAACTAAGAGAGAAACAATTCTACA--TAAATAAGTTTTTAA
*
18513343 TTCAAAGAC
383 TTAAAAGAC
18513352 TAACTGTTGT
Statistics
Matches: 2412, Mismatches: 443, Indels: 396
0.74 0.14 0.12
Matches are distributed among these distances:
413 2 0.00
414 128 0.05
415 56 0.02
416 3 0.00
419 2 0.00
424 2 0.00
425 2 0.00
428 54 0.02
429 404 0.17
430 200 0.08
431 534 0.22
432 271 0.11
433 12 0.00
434 4 0.00
435 1 0.00
436 5 0.00
438 8 0.00
439 11 0.00
440 4 0.00
441 7 0.00
442 5 0.00
443 8 0.00
444 9 0.00
445 1 0.00
446 3 0.00
447 7 0.00
448 7 0.00
449 14 0.01
450 16 0.01
451 9 0.00
452 11 0.00
453 1 0.00
454 4 0.00
455 9 0.00
456 6 0.00
457 2 0.00
458 2 0.00
459 2 0.00
460 21 0.01
461 57 0.02
462 13 0.01
463 10 0.00
464 9 0.00
465 2 0.00
467 1 0.00
468 1 0.00
473 1 0.00
474 6 0.00
475 3 0.00
476 287 0.12
477 97 0.04
480 3 0.00
482 1 0.00
485 1 0.00
487 1 0.00
488 5 0.00
489 14 0.01
490 9 0.00
491 9 0.00
492 7 0.00
493 2 0.00
494 3 0.00
496 2 0.00
497 10 0.00
498 1 0.00
499 1 0.00
501 1 0.00
502 6 0.00
503 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (425 bp):
AAATGATGTGATTTCCCGAGCATTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
TACTTTAAGGAACCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGAAAGTTAGCAAGG
AACCAAGAGAAAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAA
AATGACAAACTATTTAGACAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAA
GGAATGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTAGTAAAATTTTGACAA
GTTCGAAGTTCAGCTAAGAACTAAGAGAGAAACAATTCTACATAAATAAGTTTTTAATTAAAAGA
CCAAAACTATTTACAAAATGACAAACTATTTACAA
Found at i:18511164 original size:21 final size:19
Alignment explanation
Indices: 18511125--18511164 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
18511115 TTCAAAGACC
*
18511125 AAAACTATTTACGAAATGA
1 AAAACTATTTACAAAATGA
18511144 AAAACTATTTAGACAAAATGA
1 AAAACTATTT--ACAAAATGA
18511165 TGCGATTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (19 bp):
AAAACTATTTACAAAATGA
Found at i:18511612 original size:262 final size:262
Alignment explanation
Indices: 18511138--18511617 Score: 601
Period size: 262 Copynumber: 1.8 Consensus size: 262
18511128 ACTATTTACG
18511138 AAATGAAAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAATTGCTCG
1 AAATGAAAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAATTGCTCG
* * * * *
18511203 AAGGAATGGATCGTCTTGAGTAATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGAC
66 AAGGAATGGATCATCTTAAATAATTTAAGGAACCAAATTTACAAAAGAAATCGCAAAAGTTTGAC
* * * * *
18511268 AAGTTCGGTAGTTCGGCAAGGAACCAAGAGAAAATAATTCTCATGTAAATAAGTTTTTTATTCAA
131 AAGTTCAGAAGTTCGGCAAGGAACCAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
18511333 AGACCTAAAGCTATTTAC-AAATTGATGAACATAACTTTTTAATTTAAAGACTAATTGTTGTTTA
196 AGACCTAAAACTATTTACGAAATTGATGAACATAACTTTTTAATTTAAAGACTAATTGTTGTTTA
18511397 TA
261 TA
* * * * *
18511399 AAATGACAAACTATTTAGACAATATGATGCGA-TTCCTTGAGCGA-GGAATGTTCGAAAATTTGT
1 AAATGAAAAACTATTTAGACAAAATGATGCGATTTCC-CGAGC-ATAGAATGTTCGAAAA-TTGC
* * * * * * * *
18511462 TTGAAGGAATGGATCATCTTAAATACTTTAAGGATCCAAAGTTT-CGAAAGAACTTGTAAAATTT
63 TCGAAGGAATGGATCATCTTAAATAATTTAAGGAACCAAA-TTTACAAAAGAAATCGCAAAAGTT
* * * * * * *
18511526 TGACAAGTTCAGAAGTTTGGCTATGAACTAGGAGAGAAACAATTTTCCCGTAAATAAGTTTTTAA
127 TGACAAGTTCAGAAGTTCGGCAAGGAACCAAGAGA-AAACAATTCTCACGTAAATAAGTTTTTAA
18511591 TTCAAAGACC-AAAACTATTTACGAAAT
191 TTCAAAGACCTAAAACTATTTACGAAAT
18511618 GACAAACTAT
Statistics
Matches: 182, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
260 4 0.02
261 47 0.26
262 90 0.49
263 41 0.23
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (262 bp):
AAATGAAAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAATTGCTCG
AAGGAATGGATCATCTTAAATAATTTAAGGAACCAAATTTACAAAAGAAATCGCAAAAGTTTGAC
AAGTTCAGAAGTTCGGCAAGGAACCAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
AGACCTAAAACTATTTACGAAATTGATGAACATAACTTTTTAATTTAAAGACTAATTGTTGTTTA
TA
Found at i:18511640 original size:21 final size:19
Alignment explanation
Indices: 18511602--18511640 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
18511592 TCAAAGACCA
*
18511602 AAACTATTTACGAAATGAC
1 AAACTATTTACAAAATGAC
18511621 AAACTATTTAGACAAAATGA
1 AAACTATTT--ACAAAATGA
18511641 TGTGATTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (19 bp):
AAACTATTTACAAAATGAC
Found at i:18511814 original size:476 final size:475
Alignment explanation
Indices: 18510894--18512223 Score: 2005
Period size: 476 Copynumber: 2.8 Consensus size: 475
18510884 GTAAATAAGG
* * ** *
18510894 TTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAGACAAGATGATGCGATTT
1 TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGA-TT
* * * *
18510958 CCCGCA-C-ATGGAATGTTCAGAAAA-TTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGA
65 CCAG-AGCGA-GGAATGTTC-GAAAATTTGTTCGAAGGAATGGATCGTCTTAAATACTTTAAGG-
** *
18511020 AT-TGAAG-TTAGAATAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTCGGCTAAGAACTAAGA
126 ATCCAAAGTTTAGAA-AGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTAAGAACTAAGA
*
18511083 GAGAAACAATTCTCACTTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGAAAAA
190 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGAAAAA
*
18511148 CTATTTAGACAAAATGATGCGATTTCCCGAGCATAGAATGTTC-GAAAATTGCTCGAAGGAATGG
255 CTATTTAGACAAAATGATGTGATTTCCCGAGCATAGAATGTTCAG-AAATTGCTCGAAGGAATGG
*
18511212 ATCGTCTTGAGTAATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGT
319 ATCGTCTTGAGTTATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGT
* * *
18511277 AGTTCGGCAAGGAACCAAGAGAAAATAATTCTCATGTAAATAAGTTTTTTATTCAAAGACCTAAA
384 AGTTCGGCAAGGAACCAAGAGAAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCTAAA
*
18511342 GCTATTTACAAATTGATGAACATAACT
449 GCTATTTACAAATTGACGAACATAACT
18511369 TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGATTC
1 TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGATTC
* * *
18511434 CTTGAGCGAGGAATGTTCGAAAATTTGTTTGAAGGAATGGATCATCTTAAATACTTTAAGGATCC
66 C-AGAGCGAGGAATGTTCGAAAATTTGTTCGAAGGAATGGATCGTCTTAAATACTTTAAGGATCC
* * *
18511499 AAAGTTTCGAAAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTATGAACTAGGAGAGAA
130 AAAGTTTAGAAAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTAAGAACTAAGAGAGAA
* * *
18511564 ACAATTTTCCCGTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGACAAACTATT
195 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGAAAAACTATT
*
18511629 TAGACAAAATGATGTGATTTCCCGAGCATAGAATGTTCAGAAATTGCTCGAACGAATGGATCGTC
260 TAGACAAAATGATGTGATTTCCCGAGCATAGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTC
* *
18511694 TTGAGTTATTTAAGGAACCGAATTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGTAGTTCG
325 TTGAGTTATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGTAGTTCG
* *
18511759 GTAAGGAACCAAGAGAAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCTAAAGCTGTT
390 GCAAGGAACCAAGAGAAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCTAAAGCTATT
18511824 TACAAATTGACGAACATAACT
455 TACAAATTGACGAACATAACT
18511845 TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGATTC
1 TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGATTC
*
18511910 ACAGAGCGAGGAATGTTCGAAAATTTGTTCGAAGGAATGGATTGTCTTAAATACTTTAAGGATCC
66 -CAGAGCGAGGAATGTTCGAAAATTTGTTCGAAGGAATGGATCGTCTTAAATACTTTAAGGATCC
* * *
18511975 AAAGTTTTA-AAAGAACTTGTAAAATTTTAACAAGTTCAGAAGTTTGGCTAAGAACCATGAGAGA
130 AAAG-TTTAGAAAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTAAGAACTAAGAGAGA
* * *
18512039 AACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGAGAAACTA
194 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTATTTACGAAATGAAAAACTA
* * **
18512104 TTTAGATC-AAATGATGTGATTTCTCGAGCA-AGGAATGTTCAAAAATTGCTCGAAGGAATAAAT
258 TTTAGA-CAAAATGATGTGATTTCCCGAGCATA-GAATGTTCAGAAATTGCTCGAAGGAATGGAT
* * * * * * * *
18512167 CGGCTTGAATTCTTTAAGAAACCGAAGTTATAAAAGAAATCACAAATGTTTGGCAAG
321 CGTCTTGAGTTATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAG
18512224 GAACCAAGAG
Statistics
Matches: 783, Mismatches: 59, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
475 36 0.05
476 613 0.78
477 133 0.17
478 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.30
Consensus pattern (475 bp):
TTTTAATTTAAAGACTAATTGTTGTTTATAAAATGACAAACTATTTAGACAATATGATGCGATTC
CAGAGCGAGGAATGTTCGAAAATTTGTTCGAAGGAATGGATCGTCTTAAATACTTTAAGGATCCA
AAGTTTAGAAAGAACTTGTAAAATTTTGACAAGTTCAGAAGTTTGGCTAAGAACTAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTATTTACGAAATGAAAAACTATTT
AGACAAAATGATGTGATTTCCCGAGCATAGAATGTTCAGAAATTGCTCGAAGGAATGGATCGTCT
TGAGTTATTTAAGGAACCGAATTTATAAAAGAAATCGCAAAAGTTTGACAAGTTCGGTAGTTCGG
CAAGGAACCAAGAGAAAATAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCTAAAGCTATTT
ACAAATTGACGAACATAACT
Found at i:18511871 original size:47 final size:47
Alignment explanation
Indices: 18511792--18511881 Score: 110
Period size: 47 Copynumber: 1.9 Consensus size: 47
18511782 TCTCACGTAA
* *
18511792 ATAAGTTTTTAATTAAAAGACCTAAAGCTGTTTACAAATTGACGAAC
1 ATAACTTTTTAATTAAAAGACCTAAAGCTGTTTACAAAATGACGAAC
* * * *
18511839 ATAACTTTTTAATTTAAAGA-CTAATTGTTGTTTATAAAATGAC
1 ATAACTTTTTAATTAAAAGACCTAA-AGCTGTTTACAAAATGAC
18511882 AAACTATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
46 4 0.11
47 32 0.89
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (47 bp):
ATAACTTTTTAATTAAAAGACCTAAAGCTGTTTACAAAATGACGAAC
Found at i:18513126 original size:215 final size:214
Alignment explanation
Indices: 18512224--18513379 Score: 1165
Period size: 216 Copynumber: 5.4 Consensus size: 214
18512214 GTTTGGCAAG
*
18512224 GAACCAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGCTT-AC
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTAAC
* * * * ** ** * *
18512288 AAATTCACGAACTATTTAGACTAAAAGATGTGATTTCCCGAGCCTGGAATGTTTGAAAAATTGT-
65 AAAATGACAAACTATTTAGACCAAAAGATACGATTTCAAGAGCATGGAATG-TTCAAAAATT-TC
* * * *
18512352 TCGAAGGAATGGATCATTTTGAATACTTTAAGGAACCGAA-TATATAAAAGAACTCTTAAAAGTT
128 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGT-TATAAAAGAACTCGTAAAAGTT
* * *
18512416 TGACCAGTTTGAAATTTCGAACAA
192 TGACAAGTTTGGAAGTTCG-ACAA
* * * * * * * *
18512440 GAACCAAGTGACAAACGATTCTCACATAAATAAGTTTTTAATTCAAAAACTAAAAGTTGTTTATA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTAACA
* ** * *
18512505 AAATGACAAGCTATTTAGATGAAATGATACGATTTCCAA-AGCATGGAATGTTCAAAAAATTGCT
66 AAATGACAAACTATTTAGACCAAAAGATACGATTT-CAAGAGCATGGAATGTTC-AAAAATTTCT
* * ** *
18512569 TGAAGGAATGGATCGTCTTGAAAACTTTAAGGAACCA-AAAATATAAAAGAACTCGTAAAAGATT
129 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTT
* *
18512633 GAAAAGTTTGGAAGTTTGGACAA
193 GACAAGTTTGGAAG-TTCGACAA
*
18512656 GCACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAA-
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTAAC
** ** * * * *
18512720 AAAATGACAAACTATTTAGACCAAAAGATGTGATTTCCTGAGCATGGATTATTCGAAGAATTGCT
65 AAAATGACAAACTATTTAGACCAAAAGATACGATTTCAAGAGCATGGAATGTTC-AAAAATTTCT
* * * * *
18512785 CGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACTGAAGTTTTGAAAGAACTCGTAAAAGTTTG
129 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * *
18512850 ACAAGTTTGGAGGTTTGTCCAA
194 ACAAGTTTGGAAGTTCG-ACAA
* * * *
18512872 GAGCCAAGAGTGAAACAATTCTCACTTAAATACGTTTTTAATTCAAAGACCAAAAGTTGTTAACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTAACA
* * * * **
18512937 AAATGATAAACAATTTAGACCAAATGTTACGATTTCAAGAGCATGGAATGTTTTAAAATTTCTCG
66 AAATGACAAACTATTTAGACCAAAAGATACGATTTCAAGAGCATGGAATGTTCAAAAATTTCTCG
* * * * * *
18513002 AAGGAATGGATCATCTTGAATATTTTAAGGAACAGAAGTTCTAAAAGAAATCGCAAAAGGTTGAC
131 AAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* **
18513067 AAGTTCGGTTGTTCGACAA
196 AAGTTTGGAAGTTCGACAA
** * *
18513086 GGAACCAAGAGAGAAACAATTCTCATATAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTAC
1 -GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTAAC
* ** ** * * *
18513151 AAATTGATGAACTATTTAGACCAAAAGATACGATTTCTCGTGCCTGGAATGTTCAAAAATTTGTT
65 AAAATGACAAACTATTTAGACCAAAAGATACGATTTCAAGAGCATGGAATGTTCAAAAATTT-CT
* * * * * * *
18513216 CAAAGAAATGGGTCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAATTTTT
129 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * *
18513280 ACTAGTTCGAAAGATCAGACGA
194 ACAAGTTTGGAAGTTC-GACAA
*** * * ** * *
18513302 GAACCAAGAGAGAAATGGTTCTCATGTAAATAAGTTTTTAATTCAAAGACTAACTGTTGTTTATA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTAACA
18513367 AAATGACAAACTA
66 AAATGACAAACTA
18513380 CTTAAACAAA
Statistics
Matches: 774, Mismatches: 151, Indels: 31
0.81 0.16 0.03
Matches are distributed among these distances:
214 3 0.00
215 278 0.36
216 485 0.63
217 8 0.01
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (214 bp):
GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTAACA
AAATGACAAACTATTTAGACCAAAAGATACGATTTCAAGAGCATGGAATGTTCAAAAATTTCTCG
AAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
AAGTTTGGAAGTTCGACAA
Found at i:18513236 original size:431 final size:431
Alignment explanation
Indices: 18512220--18513377 Score: 1326
Period size: 432 Copynumber: 2.7 Consensus size: 431
18512210 AAATGTTTGG
* *
18512220 CAAGGAACCAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGCT
1 CAAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * *
18512285 TACAAATTCACGAACTATTTAGACTAAAAGATGTGATTTCCCGAGCCTGGAATGTTTGAAAAATT
66 TACAAATTGACGAACTATTTAGACCAAAAGATGTGATTT-CCGAGCCTGGAATG-TTCAAAAATT
* * *
18512350 GTTCGAAGGAATGGATCATTTTGAATACTTTAAGGAACCGAA-TATATAAAAGAACTCTTAAAAG
129 GTTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT-TATAAAAGAACTCGTAAAAG
* * *
18512414 TTTGACCAGTTTGAAATTTCGAACAAGAACCAAGTGACAAACGATTCTCACATAAATAAGTTTTT
193 TTTGACAAGTTTGAAATTTCGAACAAGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTT
* * * * * **
18512479 AATTCAAAAACTAAAAGTTGTTTATAAAATGACAAGCTATTTAGATGAAATGATACGATTTCCAA
258 AATTCAAAAACCAAAAGTTGTTAACAAAATGACAAACAATTTAGACCAAATGATACGATTTCCAA
* *
18512544 AGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGGATCGTCTTGAAAACTTTAAGGAACCAAAA
323 AGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAAAACTTTAAGGAACCAAAA
* * * *
18512609 ATATAAAAGAACTCGTAAAAGATTGAAAAGTTTGGAAGTTTGGA
388 ATATAAAAGAAATCGCAAAAGATTGAAAAGTTCGGAAGTTTCGA
*
18512653 CAA-GCACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
1 CAAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * *
18512717 TAAAAAATGACAAACTATTTAGACCAAAAGATGTGATTTCCTGAGCATGGATTATTCGAAGAATT
66 TACAAATTGACGAACTATTTAGACCAAAAGATGTGATTTCC-GAGCCTGGAATGTTC-AAAAATT
* * * * * *
18512782 GCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACTGAAGTTTTGAAAGAACTCGTAAAAGT
129 GTTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
** ** * ** * *
18512847 TTGACAAGTTTGGAGGTTT-GTCCAAGAGCCAAGAGTGAAACAATTCTCACTTAAATACGTTTTT
194 TTGACAAGTTT-GAAATTTCGAACAAGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTT
* * *
18512911 AATTCAAAGACCAAAAGTTGTTAACAAAATGATAAACAATTTAGACCAAATGTTACGATTT-CAA
258 AATTCAAAAACCAAAAGTTGTTAACAAAATGACAAACAATTTAGACCAAATGATACGATTTCCAA
** * * *
18512975 GAGCATGGAATGTT-TTAAAATTTCTCGAAGGAATGGATCATCTTGAATATTTTAAGGAA-CAGA
323 -AGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAAAACTTTAAGGAACCA-A
** * * * **
18513038 AGTTCTAAAAGAAATCGCAAAAGGTTGACAAGTTCGGTTG-TTCGA
386 AAATATAAAAGAAATCGCAAAAGATTGAAAAGTTCGGAAGTTTCGA
** *
18513083 CAAGGAACCAAGAGAGAAACAATTCTCATATAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTT
1 CAAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* ** *
18513148 TACAAATTGATGAACTATTTAGACCAAAAGATACGATTTCTCGTGCCTGGAATGTTCAAAAATTT
66 TACAAATTGACGAACTATTTAGACCAAAAGATGTGATTTC-CGAGCCTGGAATGTTCAAAAA-TT
* * * * *
18513213 GTTCAAAGAAATGGGTCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAATT
129 GTTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
* * * ** * * *** **
18513277 TTTACTAGTTCGAAAGATC-AGACGAGAACCAAGAGAGAAATGGTTCTCATGTAAATAAGTTTTT
194 TTGACAAGTTTGAAATTTCGA-ACAAGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTT
* * ** * *
18513341 AATTCAAAGACTAACTGTTGTTTATAAAATGACAAAC
258 AATTCAAAAACCAAAAGTTGTTAACAAAATGACAAAC
18513378 TACTTAAACA
Statistics
Matches: 602, Mismatches: 112, Indels: 25
0.81 0.15 0.03
Matches are distributed among these distances:
429 3 0.00
430 89 0.15
431 229 0.38
432 272 0.45
433 9 0.01
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (431 bp):
CAAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAATTGACGAACTATTTAGACCAAAAGATGTGATTTCCGAGCCTGGAATGTTCAAAAATTGT
TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
GACAAGTTTGAAATTTCGAACAAGAACCAAGAGACAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAAACCAAAAGTTGTTAACAAAATGACAAACAATTTAGACCAAATGATACGATTTCCAAAGC
ATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAAAACTTTAAGGAACCAAAAATA
TAAAAGAAATCGCAAAAGATTGAAAAGTTCGGAAGTTTCGA
Found at i:18514316 original size:215 final size:216
Alignment explanation
Indices: 18513406--18515723 Score: 2539
Period size: 216 Copynumber: 10.8 Consensus size: 216
18513396 CATTAAAAAC
* * * *
18513406 TTTGTCATTTTATAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
** * * * ***
18513471 CTCTTGGTTCTTGTCCGAACTTTTGAACTTATCAAACCTTTACGAGTTCTTTTATAATTTTTTTT
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * * *
18513536 CCTTAATGTATTCAAAACGATCGATTTCTTCAAACAATTTTTCAAACATTCCAGGCTCGGGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* *
18513601 CGCATCCTTTGGTCTAAATAG
196 CACATCATTTGGTCTAAATAG
* * * * * *
18513622 TTCGTAAATTTGTAAACAAATTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
18513687 CTCTTGGTTCCTTG-CTGAACTACAGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGT
66 CTCTTGGTT-CTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
18513751 TCCTTAAAGTATTTAAGACGATACAATCCTTCGAGCAATTTCTCGAACATTCCATGCTTCGAGAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAA
*
18513816 ATCACATCATTTTGTCTAAATAG
194 ATCACATCATTTGGTCTAAATAG
* * ** * * *
18513839 TTTGTCATTTTGTAAATACCTTTTGGTCTTTGAAAGAAAACCTTATTTACATGAGAATTGTTTTT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * *
18513904 CTCTTGGTCCTTGGT-CGAACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGT
66 CTCTTGGTTCTT-GTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * ** * * * **
18513968 TCCTAAAAGAATTCAAAATGATCCAGTCCTTTTAGTAA-TTTCCTGAAAATTCCATGCTTTGGAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAA
* *
18514032 AACACATCATTAGGTCTAAATAG
194 ATCACATCATTTGGTCTAAATAG
* * * * * *
18514055 TTTGTCATTTTTTAAACAAATTTTGATCTTTGAATTCAGAACTTATTTATGTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * * **
18514120 TTGTTAGTTCTTGTCCGATCTTCCGAACTTTTCAAACTTTTACGAGTTGTTTTATATTTTCGGTT
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * *
18514185 CCTT-AATTTTTCAAGACAATCCATTCATTCGAGCAATTTTTCGAACATTACATGCTCGGGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
18514249 CACATCATTTTGTCTAAATAG
196 CACATCATTTGGTCTAAATAG
* * * **
18514270 TTTGTCATTTTATAAATAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * ** *
18514335 CTTTTGGTTCTTGTCCAAACTTTTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * ** * * *
18514400 CCTTAAATTATTCAAGATGATCTATTCCGTCGAACAATTTTTTTAACATTCCAGGCACGAGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
18514465 CACATCTTTTGGTCTAAATAG
196 CACATCATTTGGTCTAAATAG
* * * *
18514486 TTCGTCAATTTGTAAACAACTTTTGCTCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * ** *** * *
18514551 CTCTTTGTTCCTTGT-CGAACTACTAAACTTGTCAAACTTTTGTTATTTCTTTTATAACTTCAGT
66 CTCTTGGTT-CTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
18514615 TCCTTAAAGTATTCAAGACGATCTATTTCTTCCAGCAA-TTTTCGAACATTCCATGCCCGGGAAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA
18514679 TCACATCATTTGGTCTAAATAG
195 TCACATCATTTGGTCTAAATAG
* * * * * * *
18514701 TTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAGAACTTATTTACATGAGAATTATTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * * *
18514766 CTCCTGGTTCTTGGT-CGTACTTCCAAAGTTGTCAAAATTTTACGAGTTCTTTTATAACTTTGAT
66 CTCTTGGTTCTT-GTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * * *
18514830 TCCTTAAAGTATTCAAGATGAACCATTCATTCGAGCAA-TTTTCTGAAGATACTAGGTTCGGGAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAA
*
18514894 ATCGCATCATTTGGTCTAAATAG
194 ATCACATCATTTGGTCTAAATAG
* * * *
18514917 TTTGTCAATTTGTAAACAACTTTTGATCTTTGAATTAAAAATTTATTTACGTGAGAAATGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
18514982 CTCTTGGTTCCTTG-CCAAACTTTCGAACTTGTCAAA-TTTTACGAGTTCTTTTATAGC-TCTGA
66 CTCTTGGTT-CTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GG
* * * * *
18515044 TTCCTAAAAGTATTCAAGACGATCAATTCCTTCGAG-AAATTTCCTGAACATTCCATGCTTGGGA
129 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGA
*
18515108 AATCAAATCATTTGGTCTAAATAG
193 AATCACATCATTTGGTCTAAATAG
* *
18515132 TTTTTCATTTTG--AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * ** * * *
18515195 CTCTTGGTTCTTGGCCGAACTTTCAAACTTGTCCAAA-TTTTATAAGTT-TATTTACAACATCAG
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGT-CAAACTTTTACGAGTTCT-TTTATAACTTCGG
* * *
18515258 TTCCTTAAAGTATTCAAGATC-ACCCATTCATTCGAGCAATTTTTCAAACATTCCATGCTCGGGA
129 TTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
**
18515322 AATTGCATCATTTGGTCTAAATAG
193 AATCACATCATTTGGTCTAAATAG
* *
18515346 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCA
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * ** * * * * *
18515411 CTCTTGGCTCTAGGACGAACTTCCGAACTTGTAAAACTTTTATGAGTTCTTTCAAAACTTTGGTT
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * *
18515476 CCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCAATGCTCGAGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
18515541 CACAT-ATTTTGATCTAAATAG
196 CACATCA-TTTGGTCTAAATAG
* * * * * *
18515562 TATGTAATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGAGTATTATTTCT
1 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
** * * * * *
18515627 CTCTTGGTTCTTGTCTAAACTTTCGAACTTCTAAAACTTTTAGGAGTTCTTTTATTACTTCGGTT
66 CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
18515692 CCTTAAAGTTTTTAAGATGATCCATTCCTTCG
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCG
18515724 TCAATTTGTA
Statistics
Matches: 1742, Mismatches: 333, Indels: 54
0.82 0.16 0.03
Matches are distributed among these distances:
212 4 0.00
213 73 0.04
214 104 0.06
215 468 0.27
216 909 0.52
217 184 0.11
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGTCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
CACATCATTTGGTCTAAATAG
Found at i:18514393 original size:431 final size:431
Alignment explanation
Indices: 18513406--18515723 Score: 2623
Period size: 431 Copynumber: 5.4 Consensus size: 431
18513396 CATTAAAAAC
* * * **
18513406 TTTGTCATTTTATAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
** * * * ***
18513471 CTCTTGGTTCTTGTCCGAACTTTTGAACTTATCAAACCTTTACGAGTTCTTTTATAATTTTTTTT
66 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * *
18513536 CCTTAATGTATTCAAAACGATCGATTTCTTCAAACAATTTTTCAAACATTCCAGGCTCGGGAAAT
131 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAA-ATTCCAGGCTCGGGAAAT
* * * * *
18513601 CGCATCCTTTGGTCTAAATAGTTCGTAAATTTGTAAACAAATTTTGGTCTTTGGATTAAAAACTT
195 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAATTTTGATCTTTGAATTAAAAACTT
* * * *
18513666 ATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTGCTGAACTACAGAACTTGTCAAACTTTTACG
260 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTGCCGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
18513731 ATTTCTTTTATAACTTCAGTTCCTTAAAGTATTTAAGACGATACAATCCTTCGAGCAATTTCTCG
325 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
*
18513796 AACATTCCATGCTTCGAGAAATCACATCATTTTGTCTAAATAG
390 AACATTCCATGC-TCGGGAAATCACATCATTTTGTCTAAATAG
* * * ** * * *
18513839 TTTGTCATTTTGTAAATACCTTTTGGTCTTTGAAAGAAAACCTTATTTACATGAGAATTGTTTTT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
* * *
18513904 CTCTTGGTCCTTGGT-CGAACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGT
66 CTCTTGGTTCTT-GTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * ** * * * * **
18513968 TCCTAAAAGAATTCAAAATGATCCAGTCCTTTTAGTAATTTCCTGAAAATTCCATGCTTTGGAAA
130 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-TTCAAAATTCCAGGCTCGGGAAA
* * * * * * *
18514033 ACACATCATTAGGTCTAAATAGTTTGTCATTTTTTAAACAAATTTTGATCTTTGAATTCAGAACT
194 TCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAATTTTGATCTTTGAATTAAAAACT
* * * * * *
18514098 TATTTATGTGAGAATTGTTTCTTTGTTAGTT-CTTGTCCGATCTTCCGAACTTTTCAAACTTTTA
259 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTG-CCGAACTTCCGAACTTGTCAAACTTTTA
* ** * * * *
18514162 CGAGTTGTTTTATATTTTCGGTTCCTT-AATTTTTCAAGACAATCCATTCATTCGAGCAATTTTT
323 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
*
18514226 CGAACATTACATGCTCGGGAAATCACATCATTTTGTCTAAATAG
388 CGAACATTCCATGCTCGGGAAATCACATCATTTTGTCTAAATAG
* * * *
18514270 TTTGTCATTTTATAAATAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
* * ** *
18514335 CTTTTGGTTCTTGTCCAAACTTTTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * * *
18514400 CCTTAAATTATTCAAGATGATCTATTCCGTCGAACAATTTTTTTAACATTCCAGGCACGAGAAAT
131 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTTCAAAATTCCAGGCTCGGGAAAT
* * * * *
18514465 CACATCTTTTGGTCTAAATAGTTCGTCAATTTGTAAACAACTTTTGCTCTTTGAATTAAAAACTT
195 CGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAATTTTGATCTTTGAATTAAAAACTT
* * * * ** ***
18514530 ATTTACGTGACAATTGTTTCTCTCTTTGTTCCTTGTCGAACTACTAAACTTGTCAAACTTTTGTT
260 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTGCCGAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
18514595 ATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCTATTTCTTCCAGCAA-TTTTCG
325 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* *
18514659 AACATTCCATGCCCGGGAAATCACATCATTTGGTCTAAATAG
390 AACATTCCATGCTCGGGAAATCACATCATTTTGTCTAAATAG
* * * * *
18514701 TTAGTCATTTTTTAAATAGCTTTTGGTCTTTGAATTAAGAACTTATTTACATGAGAATTATTTCT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
* * * * * * *
18514766 CTCCTGGTTCTTGGT-CGTACTTCCAAAGTTGTCAAAATTTTACGAGTTCTTTTATAACTTTGAT
66 CTCTTGGTTCTT-GTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * *
18514830 TCCTTAAAGTATTCAAGATGAACCATTCATTCGAGCAATTTTCTGAAGATACTAGGTTCGGGAAA
130 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TCAAAATTCCAGGCTCGGGAAA
* *
18514895 TCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGATCTTTGAATTAAAAATT
194 TCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAATTTTGATCTTTGAATTAAAAACT
* * *
18514960 TATTTACGTGAGAAATGTTTCTCTCTTGGTTCCTTGCCAAACTTTCGAACTTGTCAAA-TTTTAC
259 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTGCCGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
18515024 GAGTTCTTTTATAGC-TCTGATTCCTAAAAGTATTCAAGACGATCAATTCCTTCGAG-AAATTTC
324 GAGTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * *
18515087 CTGAACATTCCATGCTTGGGAAATCAAATCATTTGGTCTAAATAG
388 C-GAACATTCCATGCTCGGGAAATCACATCATTTTGTCTAAATAG
* * * * *
18515132 TTTTTCA-TTT-TGAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTCT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
* ** * * *
18515195 CTCTTGGTTCTTGGCCGAACTTTCAAACTTGTCCAAA-TTTTATAAGTT-TATTTACAACATCAG
66 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGT-CAAACTTTTACGAGTTCT-TTTATAACTTCGG
* * * *
18515258 TTCCTTAAAGTATTCAAGATCACCCATTCATTCGAGCAATTTTTCAAACATTCCATGCTCGGGAA
129 TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAA-ATTCCAGGCTCGGGAA
* * *
18515323 ATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACA-TTTGGTCTTTGAATTAAAAA
193 ATCGCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAA-ATTTTGATCTTTGAATTAAAAA
* * * * *
18515387 CTTATTTACGTGAGAATTGTTTCACTCTTGGCT-CTAGGACGAACTTCCGAACTTGTAAAACTTT
257 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCT-TGCCGAACTTCCGAACTTGTCAAACTTT
* * * * *
18515451 TATGAGTTCTTTCAAAACTTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTT
321 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
18515516 TTCGAACAGTCAATGCTCGAGAAATCACAT-ATTTTGATCTAAATAG
386 TTCGAACATTCCATGCTCGGGAAATCACATCATTTTG-TCTAAATAG
* * * * *
18515562 TATGTAATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGAGTATTATTTCT
1 TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
** * * * * *
18515627 CTCTTGGTTCTTGTCTAAACTTTCGAACTTCTAAAACTTTTAGGAGTTCTTTTATTACTTCGGTT
66 CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* *
18515692 CCTTAAAGTTTTTAAGATGATCCATTCCTTCG
131 CCTTAAAGTATTCAAGATGATCCATTCCTTCG
18515724 TCAATTTGTA
Statistics
Matches: 1562, Mismatches: 297, Indels: 53
0.82 0.16 0.03
Matches are distributed among these distances:
428 7 0.00
429 257 0.16
430 151 0.10
431 667 0.43
432 201 0.13
433 273 0.17
434 6 0.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (431 bp):
TTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCT
CTCTTGGTTCTTGTCCGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAAATTCCAGGCTCGGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAATTTTGATCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTGCCGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
ACATTCCATGCTCGGGAAATCACATCATTTTGTCTAAATAG
Found at i:18515888 original size:158 final size:158
Alignment explanation
Indices: 18515570--18515879 Score: 428
Period size: 158 Copynumber: 2.0 Consensus size: 158
18515560 AGTATGTAAT
* **
18515570 TTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGAGTATTATTTCTCTCTTGGT
1 TTTGTAAACAACTTTTGATATTTGAATTAAAAACTTATTTACATGACAATTATTTCTCTCTTGGT
* * * * *
18515635 TCTTGTCTAAACTTTCGAACTTCTAAAACTTTTAGGAGTTCTTTTATTACTTCGGTTCCTTAAAG
66 TCTTGTCCAAACTTTCGAACTTCTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAAAG
* * *
18515700 TTTTTAAGATGATCCATTCCTTCGTCAA
131 TATTCAAGACGATCCATTCCTTCGTCAA
* * *
18515728 TTTGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGT
1 TTTGTAAACAACTTTTGATATTTGAATTAAAAACTTATTTACATGACAATTATTTCTCTCTTGGT
* *
18515793 TCCTTG-CCAAACTTTCGAACTTGTCAAA-TTTTACGAGTTCTTTTATAAC-TCTGATTCCTAAA
66 T-CTTGTCCAAACTTTCGAACTTCTAAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTAAA
*
18515855 AGTATTCAAGACGATCTATTCCTTC
129 AGTATTCAAGACGATCCATTCCTTC
18515880 AAGCAATTTC
Statistics
Matches: 133, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
156 2 0.02
157 48 0.36
158 79 0.59
159 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (158 bp):
TTTGTAAACAACTTTTGATATTTGAATTAAAAACTTATTTACATGACAATTATTTCTCTCTTGGT
TCTTGTCCAAACTTTCGAACTTCTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAAAG
TATTCAAGACGATCCATTCCTTCGTCAA
Found at i:18516047 original size:371 final size:373
Alignment explanation
Indices: 18515349--18516070 Score: 952
Period size: 371 Copynumber: 1.9 Consensus size: 373
18515339 TAAATAGTTT
* * *
18515349 GTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTC
1 GTCAATTTGTAAACAACATTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCACTC
* * * *
18515414 TTGGCTCTAGGACGAACTTCCGAACTTGTAAAACTTTTATGAGTTCTTTCAAAACTTTGGTTCCT
66 TTGGCTCTAGGACAAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTCTGATTCCT
* * * *
18515479 TAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCAATGCTCGAGAAATCAC
131 AAAAGCATTCAAGACGATCCATTCCTTCAAGCAATTTATCGAACAGTCAATGCTCGAGAAATCAA
18515544 ATATTTTGATCTAAATAGTATGTAATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATT
196 ATATTTTGATCTAAATAGTATGTAATTTTG-AAACAACTTTTGGTATTTGAATTAAAAACTTATT
** * *
18515609 TACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTTCGAACTTCTAAAACTTTTAGGAGT
260 TACATGAAAATTATTTCTCTCTTGGTTCTTGGCTAAACTTTCAAACTTCTAAAACTTTTAGGAGT
** *
18515674 TCTTTTATTACTTCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTC
325 TCTTTTACAACATCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTC
* *
18515723 GTCAATTTGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTC
1 GTCAATTTGTAAACAACATTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCACTC
* * * * * * *
18515788 TTGGTTCCT-TGCCAAACTTTCGAACTTGTCAAA-TTTTACGAGTTCTTTTATAACTCTGATTCC
66 TTGGCT-CTAGGACAAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTCTGATTCC
* * * * * *
18515851 TAAAAGTATTCAAGACGATCTATTCCTTCAAGCAATTTCAT-GAACATTCCATGCTTGGGAAATC
130 TAAAAGCATTCAAGACGATCCATTCCTTCAAGCAATTT-ATCGAACAGTCAATGCTCGAGAAATC
* * * * * *
18515915 AAATCA-TTTGGTCTAAATAGTTTTTCATTTTG-AACAACTTTTGGTCTTTGAATTAAAAATTTA
194 AAAT-ATTTTGATCTAAATAGTATGTAATTTTGAAACAACTTTTGGTATTTGAATTAAAAACTTA
* * * * * *
18515978 TTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCAAACTTGTCCAAA-TTTTATG
258 TTTACATGAAAATTATTTCTCTCTTGGTTCTTGGCTAAACTTTCAAACTTCT-AAAACTTTTAGG
18516042 AGTTCTTTTACAACATCGGTTCCTTAAAG
322 AGTTCTTTTACAACATCGGTTCCTTAAAG
18516071 CATTCAAGAC
Statistics
Matches: 299, Mismatches: 45, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
371 105 0.35
372 3 0.01
373 103 0.34
374 86 0.29
375 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (373 bp):
GTCAATTTGTAAACAACATTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCACTC
TTGGCTCTAGGACAAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCAAAACTCTGATTCCT
AAAAGCATTCAAGACGATCCATTCCTTCAAGCAATTTATCGAACAGTCAATGCTCGAGAAATCAA
ATATTTTGATCTAAATAGTATGTAATTTTGAAACAACTTTTGGTATTTGAATTAAAAACTTATTT
ACATGAAAATTATTTCTCTCTTGGTTCTTGGCTAAACTTTCAAACTTCTAAAACTTTTAGGAGTT
CTTTTACAACATCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTC
Found at i:18516264 original size:587 final size:588
Alignment explanation
Indices: 18515144--18516264 Score: 1657
Period size: 587 Copynumber: 1.9 Consensus size: 588
18515134 TTTCATTTTG
* *
18515144 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTCTCTCTTGGTTCTTGG
1 AACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGG
* * *
18515209 CCGAACTTTCAAACTTGTCCAAATTTTATAAGTTTATTTACAACATCAGTTCCTTAAAGTATTCA
66 CCAAACTTTCAAACTTGTCCAAATTTTACAAGTTTATTTACAACATCAGTTCCTAAAAGTATTCA
* ***
18515274 AGATCACCCATTCATTCGAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTC
131 AGATCACCCATTCATTCAAGCAA-TTTTCAAACATTCCATGCTCGGGAAATCAAATCATTTGGTC
*
18515339 TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
195 TAAATAGTTTGTCATTTTG-AAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAAT
*
18515404 TGTTTCACTCTTGGCTCTAGGACGAACTTCCGAACTTGTAAAACTTTTATGAGTTCTTTCAAAAC
259 TGTTTCACTCTTGGCTCTAGGACGAACTTCCAAACTTGTAAAACTTTTATGAGTTCTTTCAAAAC
* *
18515469 TTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCAATGCTC
324 ATCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCAATGCTC
* *
18515534 GAGAAATCACATATTTTGATCTAAATAGTATGTAATTTTGTAAACAACTTTTGGTATTTGAATTA
389 GAGAAATCACATATTTTAATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTATTTGAATTA
* * *
18515599 AAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCTAAACTTTCGAACTTCTAAAAC
454 AAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCCAAACTTCCAAACTTCTAAAAC
**
18515664 TTTTAGGAGTTCTTTTATTACTTCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTCGTCAAT
519 TTTTACAAGTTCTTTTATTACTTCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTCGTCAAT
18515729 TTGTA
584 TTGTA
18515734 AACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCCTT-
1 AACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTT-CTTG
* * * *
18515798 GCCAAACTTTCGAACTTGT-CAAATTTTACGAGTTCT-TTTATAAC-TCTGATTCCTAAAAGTAT
65 GCCAAACTTTCAAACTTGTCCAAATTTTACAAGTT-TATTTACAACATCAG-TTCCTAAAAGTAT
* * * *
18515860 TCAAGA-CGATCTATTCCTTCAAGCAA-TTTCATGAACATTCCATGCTTGGGAAATCAAATCATT
128 TCAAGATC-ACCCATTCATTCAAGCAATTTTCA--AACATTCCATGCTCGGGAAATCAAATCATT
* * *
18515923 TGGTCTAAATAGTTTTTCATTTTG-AACAACTTTTGGTCTTTGAATTAAAAATTTATTTACGTGA
190 TGGTCTAAATAGTTTGTCATTTTGAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * *
18515987 AAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCAAACTTGTCCAAA-TTTTATGAGTTCTTT
255 AAATTGTTTCACTCTTGGCTCTAGGAC-GAACTTCCAAACTTGT-AAAACTTTTATGAGTTCTTT
* * * * *
18516050 TACAACATCGGTTCCTTAAAGCATTCAAGACGATGCATTCCTTTGAGCAATTTTTCGAACAGTCC
318 CAAAACATCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCA
* * *
18516115 ATGCTCGAGAAATCACATATTTTAATGTAAATAGTTTGTAATTTTATAAACAACTTTTGGTTTTT
383 ATGCTCGAGAAATCACATATTTTAATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTATTT
* *
18516180 GAATTAAAAACTTATTTCCATGAGTATTATTTCTCTCTTGGTTCTTGTCCAAACTTCCAAACTTT
448 GAATTAAAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCCAAACTTCCAAACTTC
* *
18516245 TCAATCTTTTACAAGTTCTT
513 TAAAACTTTTACAAGTTCTT
18516265 ACTTAGTGAT
Statistics
Matches: 475, Mismatches: 48, Indels: 19
0.88 0.09 0.04
Matches are distributed among these distances:
586 1 0.00
587 287 0.60
588 7 0.01
589 101 0.21
590 76 0.16
591 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (588 bp):
AACAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGG
CCAAACTTTCAAACTTGTCCAAATTTTACAAGTTTATTTACAACATCAGTTCCTAAAAGTATTCA
AGATCACCCATTCATTCAAGCAATTTTCAAACATTCCATGCTCGGGAAATCAAATCATTTGGTCT
AAATAGTTTGTCATTTTGAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTG
TTTCACTCTTGGCTCTAGGACGAACTTCCAAACTTGTAAAACTTTTATGAGTTCTTTCAAAACAT
CGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAGTCAATGCTCGA
GAAATCACATATTTTAATCTAAATAGTATGTAATTTTATAAACAACTTTTGGTATTTGAATTAAA
AACTTATTTACATGAGTATTATTTCTCTCTTGGTTCTTGTCCAAACTTCCAAACTTCTAAAACTT
TTACAAGTTCTTTTATTACTTCGGTTCCTTAAAGTTTTTAAGATGATCCATTCCTTCGTCAATTT
GTA
Found at i:18523121 original size:7 final size:7
Alignment explanation
Indices: 18523109--18523154 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
18523099 AGTCACATAA
18523109 AAAAAAG
1 AAAAAAG
18523116 AAAAAAG
1 AAAAAAG
*
18523123 -AAGAAG
1 AAAAAAG
*
18523129 AAAAGAAT
1 AAAA-AAG
18523137 AAAAAAG
1 AAAAAAG
18523144 -AAAAAG
1 AAAAAAG
18523150 AAAAA
1 AAAAA
18523155 TATTTATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
6 11 0.34
7 15 0.47
8 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:18523126 original size:10 final size:10
Alignment explanation
Indices: 18523107--18523145 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
18523097 TCAGTCACAT
18523107 AAAAAA-AAG
1 AAAAAAGAAG
18523116 AAAAAAGAAG
1 AAAAAAGAAG
*
18523126 AAGAAAAGAAT
1 AA-AAAAGAAG
18523137 AAAAAAGAA
1 AAAAAAGAA
18523146 AAAGAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 6 0.22
10 12 0.44
11 9 0.33
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:18525262 original size:16 final size:14
Alignment explanation
Indices: 18525225--18525276 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
18525215 TTTAGTGTTT
* *
18525225 GAAAAAAAAGTCGA
1 GAAAAAAAAATTGA
18525239 -AAAGAAAAAATTGA
1 GAAA-AAAAAATTGA
18525253 TTGAAAAAAAAATTGA
1 --GAAAAAAAAATTGA
18525269 GAAAAAAA
1 GAAAAAAA
18525277 GAGAATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 3 0.09
14 16 0.50
16 10 0.31
17 3 0.09
ACGTcount: A:0.69, C:0.02, G:0.15, T:0.13
Consensus pattern (14 bp):
GAAAAAAAAATTGA
Found at i:18526242 original size:3 final size:3
Alignment explanation
Indices: 18526236--18526282 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
18526226 ATTATTATTA
*
18526236 TTG TTG TTG TTG TTG TTG TTG TTT TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
18526283 ATTATTATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (3 bp):
TTG
Found at i:18526394 original size:25 final size:23
Alignment explanation
Indices: 18526353--18526398 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
18526343 CCAATTAAGG
18526353 AATTATTATTTAGATTTAATTCT
1 AATTATTATTTAGATTTAATTCT
*
18526376 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
18526399 TGTATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCT
Found at i:18528038 original size:216 final size:216
Alignment explanation
Indices: 18527392--18528135 Score: 872
Period size: 216 Copynumber: 3.5 Consensus size: 216
18527382 ACTGCATCAC
* * * * *
18527392 CGAACATTCAATGGTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTGATTTTGTAAATAGCT
1 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
*
18527457 TTTGGTCTTTGAATTAAAAA-TATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGCCAAAC
66 TTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAAC
* * ** *
18527521 TTCCGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTCCGAATCCTG-AAATTATT-GAAGAT
130 TTCCGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCG-ATTCTGTAAAGCATTCG-AGAC
18527584 GATCCATTCCTTTGAGAAATTTCTT
193 GATCCATTCCTTTGAGAAATTT-TT
* * ** * *
18527609 -GAACATTCCATGCTTGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACT
1 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
* *
18527673 TTT-G-----G--TT--CAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGCCAAACT
66 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACT
* * * *
18527728 TCCGAACTTGTCAAAATTTTACTAGTTCTTTTATAACTTCGGTTCCT-TCAAGCATTCAAGACGA
131 TCCGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATT-CTGTAAAGCATTCGAGACGA
* * *
18527792 CCCAATCATTTGAGAAATTTTT
195 TCCATTCCTTTGAGAAATTTTT
*
18527814 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
1 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
* * * * * *
18527879 TTTGGTCTTTGAATTAAAAACTTATTTACCTGATAATTGTTTCTCTATTGGCTCTTGGACGAACT
66 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACT
** * * * * *
18527944 T-AAAAGCTTGTCAAAGTTTTACGAGTTCTTTCAAAACTTCGATTTTGTAAAGCATTCGAGACGA
131 TCCGAA-CTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCTGTAAAGCATTCGAGACGA
* * *
18528008 TCCATTCCTTCGGGCAATTTTT
195 TCCATTCCTTTGAGAAATTTTT
* * * *
18528030 CTAACATTCCATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTTATTTTGTAAACAACT
1 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
* * *
18528095 TTTGGTTTTTGACTTAAAAACTTATTTATGTGAGAATTGTT
66 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
18528136 ACTAATATGA
Statistics
Matches: 445, Mismatches: 65, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
205 3 0.01
206 173 0.39
207 2 0.00
208 2 0.00
210 1 0.00
212 1 0.00
214 2 0.00
215 4 0.01
216 257 0.58
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACT
TCCGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGATTCTGTAAAGCATTCGAGACGAT
CCATTCCTTTGAGAAATTTTT
Found at i:18535486 original size:15 final size:16
Alignment explanation
Indices: 18535466--18535495 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18535456 TGAATTTAAG
18535466 ATTAAAT-TAATTCTT
1 ATTAAATATAATTCTT
18535481 ATTAAATATAATTCT
1 ATTAAATATAATTCT
18535496 AAATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTAAATATAATTCTT
Found at i:18536547 original size:10 final size:10
Alignment explanation
Indices: 18536534--18536644 Score: 61
Period size: 10 Copynumber: 11.4 Consensus size: 10
18536524 TTTTGATGCA
18536534 TTTTATAATT
1 TTTTATAATT
*
18536544 TTTTATGA-T
1 TTTTATAATT
*
18536553 TTTAATAATT
1 TTTTATAATT
* *
18536563 TTTTACAATA
1 TTTTATAATT
18536573 TTTTAT-A-T
1 TTTTATAATT
*
18536581 TTTTACAA-T
1 TTTTATAATT
*
18536590 CTTTATAATT
1 TTTTATAATT
*
18536600 TTGTTTTAAATT
1 TT-TTAT-AATT
* **
18536612 TTTAATAAAA
1 TTTTATAATT
*
18536622 TTTAAT-ATT
1 TTTTATAATT
*
18536631 TTTTATTATT
1 TTTTATAATT
18536641 TTTT
1 TTTT
18536645 CCACATGTCA
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
8 5 0.07
9 22 0.29
10 37 0.49
11 5 0.07
12 6 0.08
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:18536555 original size:9 final size:9
Alignment explanation
Indices: 18536534--18536601 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
18536524 TTTTGATGCA
18536534 TTTTATAATT
1 TTTTATAA-T
*
18536544 TTTTATGAT
1 TTTTATAAT
*
18536553 TTTAATAATT
1 TTTTATAA-T
*
18536563 TTTTACAAT
1 TTTTATAAT
18536572 ATTTTAT-AT
1 -TTTTATAAT
*
18536581 TTTTACAAT
1 TTTTATAAT
*
18536590 CTTTATAAT
1 TTTTATAAT
18536599 TTT
1 TTT
18536602 GTTTTAAATT
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
8 5 0.11
9 21 0.47
10 19 0.42
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18536560 original size:19 final size:19
Alignment explanation
Indices: 18536522--18536567 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
18536512 GTTAAAGGGT
18536522 TTTTTTGATGCATTTTATAA
1 TTTTTT-ATGCATTTTATAA
18536542 TTTTTTATG-ATTTTAATAA
1 TTTTTTATGCATTTT-ATAA
18536561 TTTTTTA
1 TTTTTTA
18536568 CAATATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.20
19 14 0.56
20 6 0.24
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.65
Consensus pattern (19 bp):
TTTTTTATGCATTTTATAA
Found at i:18536582 original size:19 final size:20
Alignment explanation
Indices: 18536533--18536601 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 20
18536523 TTTTTGATGC
**
18536533 ATTTTATAATTTTTTATGAT
1 ATTTTATAATTTTTTACAAT
*
18536553 -TTTAATAATTTTTTACAAT
1 ATTTTATAATTTTTTACAAT
18536572 ATTTTAT-A-TTTTTACAAT
1 ATTTTATAATTTTTTACAAT
*
18536590 -CTTTATAATTTT
1 ATTTTATAATTTT
18536602 GTTTTAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
17 5 0.12
18 11 0.27
19 20 0.49
20 5 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (20 bp):
ATTTTATAATTTTTTACAAT
Found at i:18536600 original size:18 final size:18
Alignment explanation
Indices: 18536533--18536601 Score: 70
Period size: 18 Copynumber: 3.7 Consensus size: 18
18536523 TTTTTGATGC
**
18536533 ATTTTATAATTTTTTATG
1 ATTTTATAATTTTTTACA
18536551 ATTTTAATAATTTTTTACA
1 ATTTT-ATAATTTTTTACA
18536570 ATATTT-T-ATATTTTTACA
1 AT-TTTATAAT-TTTTTACA
18536588 ATCTTTATAATTTT
1 AT-TTTATAATTTT
18536602 GTTTTAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
17 2 0.05
18 19 0.44
19 17 0.40
20 5 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (18 bp):
ATTTTATAATTTTTTACA
Found at i:18539329 original size:216 final size:215
Alignment explanation
Indices: 18537677--18541461 Score: 3512
Period size: 216 Copynumber: 17.7 Consensus size: 215
18537667 GTATTCTCTA
** ** * * ** **
18537677 GTCTTTGAATTAAAAACTTATTTACACGAGAAACGTTTCCCTCTTGATTCTTGTCTAAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * *
18537742 AACTTGTCAAACTTTTATGAATTCTTTAATAACTTGGGTTCCTTAAAGTATTCATGACGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * * *
18537807 TCCTTCAAACAATTTTTCGAA-ATTCCAGGCACGAGAAATTGCATCTTTTAGTCTAAATAGTTCG
131 TCCTTCAAGCAA-TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
18537871 TCAATTTGTAAACAAC-TTCTT
195 TCATTTTGTAAACAACATT-TG
* *
18537892 GTCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTTG-CCAAACTAT-
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGAACT-TC
* * * * *
18537955 CGAACTTGACAAACTTTTACGATTTATTTTATAACTTCGGTTCCTTAAAGTATTTAAGATGATCC
64 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * **
18538020 ATTCCTTCGAGCAATTTTCGGACATTCCATGCTTC-GGAAATCACATTATTTGGTCTAAATACAT
129 ATTCCTTCAAGCAATTTCCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
18538084 TCTCATTTTTTAAATAGCTTTTG
193 TGTCATTTTGTAAACAACATTTG
* ** * *** **
18538107 GTCTCTGAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGCTCTTGGATGAACTTATG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * *
18538172 TACTTGTCAAACTTTTACGAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * **
18538237 TCCTTCGAGCAATTTTCCGAACATTTCATGCTCAGGACATCGCATCTTTTGGTCTAAATAGTTCA
131 TCCTTCAAGCAA-TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
18538302 TCAATTTGTAAACAAC-TTTG
195 TCATTTTGTAAACAACATTTG
* * *
18538322 GTCTTGGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTTACTTG-CAGAACTAT-
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGAACT-TC
* * * *
18538385 CGAACTTGTCAAACTTTTGCGATTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCC
64 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * *
18538450 ATTCCTTCGAGCAATTTCTGAAAATTCCTTGCTTGGAAAATCGCGTTATTTGGTCTAAATAGTTT
129 ATTCCTTCAAGCAATTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
18538515 GTAATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACATTTG
* * * * * * * *
18538537 GTCTTTCAATTAAAAACTTATTTATGTGAGAATTATTTCTCTATTGATTCTTGGCCGAATTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * * *
18538602 AATTTGTCAAA-TTGTTATGAATTCTTTTATAACTTCGGTTCCATAAAATATTGAAGACGA-CCA
66 AACTTGTCAAACTT-TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC-
* * * ** *
18538665 ATTCATTCGAGCATTTTTTGGAACATTCCATGCTCGGGAAATCGTATC-TTTGGTCTAAATAGTT
129 ATTCCTTCAAGCA-ATTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* *
18538729 TGTC-TTTTTTAATACAAAATTTG
193 TGTCATTTTGTAA-ACAACATTTG
* * * ** *** *
18538752 ATCTTTGAATTAAAAACTTATTTAAGTGAGAACTGTTTCTCTCTTGCCTCTTGGATGAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * * *
18538817 AACTTGT-AAAGCTTTTACGAGTTCTTTCAAAACGTT-GATTCCTTACAGTGTTAAAGACGATCC
66 AACTTGTCAAA-CTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
18538880 A----TTC---C---TT-CGAACATTTCATGCTTGGGAAGTCGCATCATTTGGTCTTAATAGTTT
129 ATTCCTTCAAGCAATTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
18538934 GTCATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACATTTG
* * * * * *
18538956 GTCTTTGAATT--AAACTTATTTACATGAGAATTGTCTCTCTATTGGTTCTTGGCTGAACTACCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * * *
18539019 AACTTGTCAAAATGTTACGAGTTCTTTTATAACTTCAGTTCCATAAAATATTGAAGACGA-CCAA
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC-A
* * *
18539083 TTCATTCGAGTAATATTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
130 TTCCTTCAAGCAAT-TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
18539148 GTCATTTTGTAAACAACATTTG
194 GTCATTTTGTAAACAACATTTG
* ** ***
18539170 GTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGAATGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * * * **
18539235 AACTTGTAAAAATTTTACTAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTAAAGAAAATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
18539300 TCCTTCAAGCAATTATCCAAATATTCCATGGTCGAGAAATCGCATCATTTTGTCTAAATTA-TTT
131 TCCTTCAAGCAATT-TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTT
* * * *
18539364 GTCCTTATATAAA-AA-ATTTTA
194 GTCATTTTGTAAACAACA-TTTG
* * *
18539385 ATCTTTGAATTAAAAACTTATTTACGTGAGAATGGTTTCTCTCTTGGTTCTAGTCCGAACTAT-C
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACT-TCC
* ** * * * *
18539449 AAACTTGTTTAACTTTTACGAGTTCTTTTATAATTTTGGTTCCATAATGTATTCAAGACGATCCA
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
** * * *
18539514 TTCCTTCGAA-CAATTTTTTGAACATTCCAGGTTCGGGAATTCAG-ATCATTTGGTCTAAATAGT
130 TTCCTTC-AAGCAA-TTTCCGAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGT
** *
18539577 TCATCAATTTGTAAACAA-ATTTTG
192 TTGTCATTTTGTAAACAACA-TTTG
* * * * * *
18539601 TTCGTTGAATTAAAAGCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTT-ACCAAACTAT-
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGAACT-TC
* * * * * * *
18539664 CAAACTTGTCAAACTTTTGCAATTTCTTTTATAACCTCGGTTCCATAAAGTATTCAAGATG-TCC
64 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-C
* * * * * * *
18539728 CATTCATTCGAGCAATCTTCTGAATATTCCATGCTTGAGAAATCGCATCAATTGGTCTAAATAGT
128 CATTCCTTCAAGCAAT-TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
*
18539793 TTGTCATTTTGTGAACAACATTTG
192 TTGTCATTTTGTAAACAACATTTG
*
18539817 GCCTTTGAATTAAAAACTTATTTACAG-GAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCC
1 GTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCC
* * * ** * * * * *
18539881 AAACTT-TCCAATCTGTTACGAGTTCTTTTATATTTTTGGTTCCTCAAAGTTTTAAAGACAATCC
65 GAACTTGT-CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
18539945 ATTCCTTGAAGCAATTTTTCAAACATTCCATGCTCGGGAAGTCGTATCATTTTGTCTAAATA-TT
129 ATTCCTTCAAGCAA-TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
18540009 TTTCATTTTATAAACAACTTTTA
193 TGTCATTTTGTAAACAACATTTG
* ** * * *
18540032 GTCTTTGAATTGAAAACTTATTTACGTGAGAATCATTCCCCTCTTGGTTCTTGTCCGAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * *
18540097 AACTTGTCAAACTTTTACGAGTTCTTTTATGACTTCGATTCTTTAAAGTAATCAA-AGCGATCCA
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCA
* * * * * * *
18540161 TTCCTTCGAA-TAATTTTTC-AAGCATTTCAGGCTCGGGAAATCACATCTTTTGGTTTAAATAGT
130 TTCCTTC-AAGCAA-TTTCCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* *
18540224 TCT-TCATATTGTAAACAACTTTTG
192 T-TGTCATTTTGTAAACAACATTTG
* *
18540248 GTCTTTG-ATATAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGGTTCCCT-TCCGAAC-T-
1 GTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGAACTTC
* *
18540309 ---AC-TG---AACTTTTACGATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCC
64 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* ** *
18540367 ATTCCTTCAAGCAATTTCCAAACATTCCATGCTCGGGAAATCATACCATTTGGTCTAAATAGTTT
129 ATTCCTTCAAGCAATTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
18540432 ATAATTTTGTAAATAGCTTTTG
194 GTCATTTTGTAAACAACATTTG
*
18540454 GTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGT-CGAACTTTC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCCGAACTTCC
* * * ** * ** *
18540517 GAACTTGTCAAAATTTTACGACTGCTTTTATAACTTCAATT-CTCTAAAGTGTTCAAGTTGACCC
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGATCC
* *
18540581 ATTCATTCGAGCAATGTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
129 ATTCCTTCAAGCAAT-TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
18540646 TGTCATTTTGTAAACAACATTTG
193 TGTCATTTTGTAAACAACATTTG
* * ** *** *
18540669 GTCTTTGGATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGCCTCTTGGATGAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
* * * * * * * * **
18540734 AACTCGTAAAATTTTTACGAGTTCTTTCAAAACTTTGATTCCTTAAAGTATTAAAGAAAATCCAT
66 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * ** * *
18540799 TCCTTCGAGCAATTATTCGAACATTCCATGGTCGATAAATCGCATCATTTTGTCTAAATTGTTTG
131 TCCTTCAAGCAATT-TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
18540864 TCATTATATAAACAACTTTTA
195 TCATTTTGTAAACAACATTTG
* * * **
18540885 GTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTGTCTCTTGGTTCTAGTCTAAACTAT-C
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACT-TCC
* ** * * * *
18540949 AAACTTGTTTAACTTTTACGAGTTCTTTTATAATTTTGGTTCCATAATGTATTCAAGACGATCCA
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
18541014 TTCCTTTGAA-CAATTTTCCGAACATTCCAGGTTCGGGAATTCGCATCATTTGGTCTAAATAGTT
130 TTCC-TTCAAGCAA-TTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
18541078 CGTCAATTTGTAAA-AAAATTTTG
193 TGTCATTTTGTAAACAACA-TTTG
* * *
18541101 TTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTG-CCGAACTACC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGAACTTCC
* * ** * *
18541165 GAACTTGTTAAACTTTTGCG-GTTTCTTTTATAACCTT-GGTTCCACAAAGCATTCAAGATG-TC
65 GAACTTGTCAAACTTTTACGAG-TTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACGAT-
* * * * *
18541227 CCATTCATTCAAGTAATCTTCTGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAG
127 CCATTCCTTCAAGCAAT-TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
18541292 TTTGTCATTTTGTAAACAACATTTG
191 TTTGTCATTTTGTAAACAACATTTG
* * * * *
18541317 GTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCACTCTTGGCTCTTAG-ACGAACTTCT
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GTCCGAACTTCC
* * * * *
18541381 GAACTTGTCAAACTTTTAAGAGTTATTTCAAAACTTCGGTTCCTTAAAGCATTCAAGA-GTATCC
65 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCC
* *
18541445 CTTCCTTCGAGCAATTT
129 ATTCCTTCAAGCAATTT
18541462 TTCGATTAGC
Statistics
Matches: 2914, Mismatches: 545, Indels: 222
0.79 0.15 0.06
Matches are distributed among these distances:
201 4 0.00
202 85 0.03
203 27 0.01
204 39 0.01
205 49 0.02
206 72 0.02
207 60 0.02
208 2 0.00
210 4 0.00
211 7 0.00
213 4 0.00
214 217 0.07
215 1066 0.37
216 1248 0.43
217 30 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCAAGCAATTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAACATTTG
Found at i:18541889 original size:216 final size:216
Alignment explanation
Indices: 18541492--18545516 Score: 3856
Period size: 216 Copynumber: 18.7 Consensus size: 216
18541482 GAAATATAAT
* * * * *
18541492 CTTTTGGTCTTTTAATTAAAAACTTATTCATGTGAGAATTATTTCTCTCTTAGTTCTTGTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * * ** * * *
18541557 CTTCCAAACTTTTGAATA-TTTTACAAGTTATTTTATATTTTTGGTTCCTCAAAG-ATTTCGATA
66 CTTTCGAACTTGTCAA-ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA-TTCAAGA
* * * * * * *
18541620 CGCTCCATTCCTTGGAGCAATTTTTCCAACATTCCTTGCTCAGGAAGTCACATCATTTTGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* *
18541685 ATATTTTGTCATTTTATAAACAA
194 ATAGTTTGTCATTTTGTAAACAA
* *
18541708 CTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCAT-TTTC-CTCTTGGTTCTTGTTCG
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT--TGTTTCTCTCTTGGTTCTTGTCCG
* * * *
18541771 AACTTTCGAATTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAAA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
** * * * * * *
18541836 CGATCCATTCCATT-GAATAATTTTTCAAACGTTTCAGGCTTGGGAAATCACATC-TTTTGGTCT
129 CGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCT
*
18541899 AAATAGTTCT-TCAATTTGTAAACAA
192 AAATAGTT-TGTCATTTTGTAAACAA
* * *
18541924 CTTTTGGTCTTTGACA-TAAAAACTTATTTATGTGTGAATTGTTTCTCTCTTGGTTCCCT-TCCG
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCG
** * ** *
18541987 AACTACCGAACTTGTCTAACTTTTGTGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
*
18542052 CGATCCATTCCTTCAAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * *
18542116 ATAGTTTATCATTTTGTAAATAG
194 ATAGTTTGTCATTTTGTAAACAA
* * * * *
18542139 CTTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCCCTTCGTTCTTGGCCTAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * ** * *
18542204 CTTTTGAACTTGTCAAAATTTTAGGACTTCTTTTATAACTTTAATTCCCTAAAGTATTCAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* * * * *
18542269 ACCCATTCATTCGAGCAA-TATTCTGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
18542333 TAGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * ** **
18542355 CATTTT-GTCTTTGGATTTAAAACATATTTACGTGAGAATTGTTTCTCTCTTGCCTCTTGGACGA
1 C-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGA
* * * * * * * *
18542419 ACTTCCAAACTTGTAAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTAAAGAC
65 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC
* * *
18542484 GACCCCTTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAGTCGCATCATTTTGTCTAAA
130 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
* *
18542549 TAGCTTGTCATTTTATAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * ** * *
18542571 C-TTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAATCATTTCCCTCTTGGTTCTTGTCCAAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * *
18542635 CTTTCAAACTTGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAATCAAAACA
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* ** * * * * *
18542700 ATCCATTCCATCGAATAATTTTTCAAACATTTCAAGCTCAGGAAATCACATC-TTTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAAA
* *
18542764 TAGCTCTT-T-AATTTGAAAACAA
195 TAG-T-TTGTCATTTTGTAAACAA
* * *
18542786 CTTTTGGTCTTTGACA-TAAAAACTTATTTTCGGGTGAATTGTTTCTCTCTTGGTTCCCTT-T-C
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT--CTTGTCC
** * * ** *
18542848 GAACTACCGAACTTGTCTAACTTTTGCGTTTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
63 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* * *
18542913 ACGATCCATTCCTTCGAGCAATTTCT-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
128 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
* * *
18542977 AATAGTTTATCATTTTGTAAATAG
193 AATAGTTTGTCATTTTGTAAACAA
* * ** *
18543001 CTTTTGATCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGAACTAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * *** * *
18543066 CTTTCGAAGTTGTCAAAATTTTATGACTTCTTTTATAACTTCAATTCCTTAAAGTATTGAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* * * * * * * * *
18543131 ACCCATTCATTCAAGCAA-TATTCCAAGGATTACATGCTTGGGAAATCGCATCATTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
18543195 TAGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * * ** * **
18543217 CATTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCCTCTCTTGCCTATTGGAC
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-T-CTCTCTTGGTTCTTGTCC
* * * * * * * * *
18543282 GAACTTCCGAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAATAAAG
63 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* * **
18543347 ACGATCCATTCCTTCGAGCAAATTTTC--A-ATTCTA-G-TC--CTAA---C-T-A-----TC-A
128 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
* * *
18543394 AACTTGTTTGTCATTATATAAACAA
193 AA-TAGTTTGTCATTTTGTAAACAA
* * ** *
18543419 CTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTGGTTCTAGTCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * *
18543484 CTATCAAACTTGTCAAACTTTTGACGAGTTCTTTTATAA-TTTCGGTTGCTTAACGTATTCAAGG
66 CTTTCGAACTTGTCAAACTTTT-ACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAA-G
* * * * ** * *
18543548 A-GATCCATTCCTTTGAACAATTTTTCGAACATTCCAAGTTTAGGAAATCACATCATTTGGTCTA
128 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
* *
18543612 AATAGTTTGTCAATTTGTAGACAA
193 AATAGTTTGTCATTTTGTAAACAA
* * *
18543636 ATTTTGTTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTTG-CCGA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGA
** * *
18543700 ACTACCGAACTTGTCAAACTTTTAC-AGTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGA
65 ACTTTCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * * * * *
18543764 CG-TCCCATTCATTCGAGCAATCTTTCGATCATTCCATGCTCGAGCAATCGCATCATTTGGTCTA
129 CGAT-CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
*
18543828 ACTAGTTTGTCATTTTGTAAACAA
193 AATAGTTTGTCATTTTGTAAACAA
* * * * ** ** *
18543852 -TATTTGGTTTTTGACTTAAAACCTTATTTACGTGAGAATTGTTTCACTCTTGGCCCTTGGACAA
1 CT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGA
* * * * * *
18543916 ACTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACTTTGGTTCCTTAAAGCATTCAAGAC
65 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC
* * * * * *
18543981 TAACCATTCCCTCGAGCAATTTTTCGAACAGTT-CGTGCTCGAGAAATCGAATC-TTTTGGTCTA
130 GATCCATTCCTTCGAGCAATTTTTCGAACA-TTCCATGCTCGGGAAATCGCATCATTTT-GTCTA
**
18544044 AATAGCGTGTCATTTTGTAAACAA
193 AATAGTTTGTCATTTTGTAAACAA
* *
18544068 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTAT-GTTCTTGTCCAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGTCCGA
* * * * * * *
18544132 ACTTCCAAACTTTTCAATCTTTTACGAGTTCTTTTAT-ATTTTCGGTTCCTCAAAGTTTTCAAGA
65 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGA
* * * * *
18544196 CGATCCAATCCTTGGAGCAATTTTTTGAACATTCCATGCTCGGGGAGTCGCATCATTTTGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * *
18544261 ATATTTTTTCATTTTATAAACAA
194 ATAGTTTGTCATTTTGTAAACAA
* ** * * *
18544284 CTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCATTTCCCTTTTGGTTCTTGTCTGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * * *
18544348 CTTTCAAACTTGTCATATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAATCAAAATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* * ** * * * * *
18544413 ATCTATTCCTTTGAATAATTTTTCGAACTTTTCAAGCTCGGGAAATCACATC-TTTTGGTCTAAC
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAAA
*
18544477 TAGTTCT-TCAATTTGTAAACAA
195 TAGTT-TGTCATTTTGTAAACAA
* * * *
18544499 CTTTTGGTCTTTGACA-TAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGATTCCCT-TCTG
1 CTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCG
** * * * * * *
18544562 AACTACCGAACTTATCAAACTTTTGCGATTTCTTTTATAAGTTTAGTTCCTTAAAGTATTTAAGA
64 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * *
18544627 CAATCCATTCGTTCGAGCAATTTTT-GAACA-TCCATGCTCGGGAAATCGCATCATTTGGTCTAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* * * *
18544690 ATAGTTTATAATTTTGTAAATAG
194 ATAGTTTGTCATTTTGTAAACAA
*
18544713 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * *** * * *
18544778 CTTTCGAACTTGTCAAAATTTTATGACTTCTTTTATAACTTCAATTCCCTAAAGTATCCAAGATG
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
18544843 ACCCATTCATTCGAGCAA-TATTCTGAACATTCCATTCTCGGCAAATAGAATCATTTGGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAA
18544907 TAGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * * * * ** *
18544929 CTTTTGGTATTTGAATTAAAAACTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * * *
18544994 CTTTCGAACTTGTCAAACTTTTATGAATTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACT
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
* *
18545059 ATCGATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCAGT-ATTTTGTCTAAA
131 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA-TCATTTTGTCTAAA
* * *
18545123 TACTTTGTCATTTTATAAAAAA
195 TAGTTTGTCATTTTGTAAACAA
* * ** ** ** * * *
18545145 CTTTTAGCCTTTGAATTAAAAGGTTATTTTTGTGAGAATCATTGCTCTCTTGGTTCTTATCTGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
* * * * ** *
18545210 GTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAA-TTTCAGTTCATTAATTTATTCAAGAT
66 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGAC
* * ** * *
18545274 GCTCCATTCCTTCGAACAATTTTTCGAACATTTTA-GACTCGAGAAATCGCATCATTTGGTCTAA
130 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG-CTCGGGAAATCGCATCATTTTGTCTAA
** *
18545338 ATAGTTCATCAATTTGTAAACAA
194 ATAGTTTGTCATTTTGTAAACAA
** * * * *
18545361 AATTTGGTCTTCGTATTAAGAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTTG-CC-A
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGTCCGA
* ** * * * * * *
18545424 AATAACCGAACTTGTCAAACTTTTATGATTTGTTTCATAACTTTGGTTCCATAAAGTATTCAACA
65 ACT-TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* *
18545489 CGATCCATTCCTTCGTG-AAATTTTCGAA
129 CGATCCATTCCTTCGAGCAATTTTTCGAA
18545517 TGATTAGTGC
Statistics
Matches: 3096, Mismatches: 613, Indels: 201
0.79 0.16 0.05
Matches are distributed among these distances:
199 34 0.01
200 51 0.02
201 7 0.00
202 55 0.02
203 5 0.00
204 1 0.00
205 1 0.00
207 3 0.00
208 1 0.00
209 1 0.00
210 1 0.00
211 1 0.00
212 3 0.00
213 12 0.00
214 188 0.06
215 718 0.23
216 1773 0.57
217 144 0.05
218 12 0.00
219 81 0.03
220 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCGAA
CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAAT
AGTTTGTCATTTTGTAAACAA
Found at i:18542310 original size:431 final size:431
Alignment explanation
Indices: 18541492--18545512 Score: 3953
Period size: 431 Copynumber: 9.4 Consensus size: 431
18541482 GAAATATAAT
* * * * * *
18541492 CTTTTGGTCTTTTAATTAAAAACTTATTCATGTGAGAATTATTTCTCTCTTAGTT-CTTGTCCGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCT-TCCGA
* * * * * * * ** * * * *
18541556 ACTTCCAAACTTTTGAATA-TTTTACAAGTTATTTTATATTTTTGGTTCCTCAAAG-ATTTCGAT
64 ACTACCGAACTTGTCAA-ACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAG
* * * * * * *
18541619 ACGCTCCATTCCTTGGAGCAATTTTTCCAACATTCCTTGCTCAGGAAGTCACATCATTTTGTCTA
127 ACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
*
18541684 AATATTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCA
191 AATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCA
** * * *
18541749 TTT-TCCTCTTGGTTCTTGTTCGAACTTTCGAATTTTTCAAACTTTTACGAGTTCTTTTATAACT
256 TTTCT-CTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * * * * *
18541813 TTGGTTCCTTAAAGTAATCAAAACGATCCATTCCATT-GAATAATTTTTCAAACGTTTCAGGCTT
320 TTGGTTCCTTAAAGTATTCAAGATGACCCATT-CATTCGAACAATTTTTCGAACATTTCATGCTC
*
18541877 GGGAAATCACATCTTTTGGTCTAAATAGTTCT-TCAATTTGTAAACAA
384 GGGAAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* *
18541924 CTTTTGGTCTTTGACATAAAAACTTATTTATGTGTGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* ** *
18541989 CTACCGAACTTGTCTAACTTTTGTGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
65 CTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
*
18542054 ATCCATTCCTTCAAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATA
* * * * * * **
18542119 GTTTATCATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * * * **
18542184 TCCCTTCGTTCTTGGCCTAACTTTTGAACTTGTCAAAATTTTAGGACTTCTTTTATAACTTTAAT
260 TCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* * * * *
18542249 TCCCTAAAGTATTCAAGATGACCCATTCATTCGAGCAA-TATTCTGAACATTCCATGCTTGGGAA
325 TCCTTAAAGTATTCAAGATGACCCATTCATTCGAACAATTTTTC-GAACATTTCATGCTCGGGAA
* *
18542313 ATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
389 ATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * * *
18542355 CATTTT-GTCTTTGGATTTAAAACATATTTACGTGAGAATTGTTTCTCTCTT-G--CCTCTTGGA
1 C-TTTTGGTCTTT-GAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCC-CTT--C
* * * * * * * *
18542416 CGAACTTCCAAACTTGTAAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTAAA
61 CGAACTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * *
18542481 GACGACCCCTTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAGTCGCATCATTTTGTCT
126 GACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCT
* *
18542546 AAATAGCTTGTCATTTTATAAACAAC-TTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAATC
190 AAATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATC
* * * * *
18542610 ATTTCCCTCTTGGTTCTTGTCCAAACTTTCAAACTTGTGAAACTTTTACGAGTTCTTTTATAACT
255 ATTTCTCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * ** * * * *
18542675 TCGGTTCCTTAAAGTAATCAAAACAATCCATTCCA-TCGAATAATTTTTCAAACATTTCAAGCTC
320 TTGGTTCCTTAAAGTATTCAAGATGACCCATT-CATTCGAACAATTTTTCGAACATTTCATGCTC
* * * * *
18542739 AGGAAATCACATCTTTTGGTCTAAATAGCTCT-TTAATTTGAAAACAA
384 GGGAAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * * *
18542786 CTTTTGGTCTTTGACATAAAAACTTATTTTCGGGTGAATTGTTTCTCTCTTGGTTCCCTTTCGAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * *
18542851 CTACCGAACTTGTCTAACTTTTGCGTTTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
65 CTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * *
18542916 ATCCATTCCTTCGAGCAATTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATA
* * * * * **
18542981 GTTTATCATTTTGTAAATAGCTTTT-GATCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTT
195 GTTTGTCATTTTATAAACAACTTTTAG-TCTTTGAATTAAAAACTTATTTACGTGAGAATCATTT
** * * * * ***
18543045 CTCTCTTGGTTCTTGAACTAACTTTCGAAGTTGTCAAAATTTTATGACTTCTTTTATAACTTCAA
259 CTCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * * *
18543110 TTCCTTAAAGTATTGAAGATGACCCATTCATTC-AAGCAA-TATTCCAAGGATTACATGCTTGGG
324 TTCCTTAAAGTATTCAAGATGACCCATTCATTCGAA-CAATTTTTCGAA-CATTTCATGCTCGGG
* *
18543173 AAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
387 AAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * * * *
18543217 CATTAGGTCTTTGGACTAAAAACTTATTTACGTGAGAATTGTTTCTCCTCTCT--TGCCTATTGG
1 CTTTTGGTCTTT-GAATAAAAACTTATTTACGTGAGAATTGTTTCT-CTCT-TGGTTCC-CTT--
* * * * * * * * * *
18543280 ACGAACTTCCGAACTGGTAAAACTTTTACAAGTTCTTTCAAAACTTCGGTTCCTTAAAGTAATAA
60 CCGAACTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* * * **
18543345 AGACGATCCATTCCTTCGAGCAAATTTT-CA-ATTCTA-G-TC--CTAA---C-T-A-----TC-
125 AGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCT
* * *
18543393 AAACTTGTTTGTCATTATATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
190 AAA-TAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
18543458 CATTTCTCTCTTGGTTCTAGTCCGAACTATCAAACTTGTCAAACTTTTGACGAGTTCTTTTATAA
254 CATTTCTCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTT-ACGAGTTCTTTTATAA
* * * * * * *
18543523 -TTTCGGTTGCTTAACGTATTCAAGGA-GATCCATTCCTTTGAACAATTTTTCGAACATTCCAAG
318 CTTT-GGTTCCTTAAAGTATTCAA-GATGACCCATTCATTCGAACAATTTTTCGAACATTTCATG
* ** *
18543586 TTTAGGAAATCACATCATTTGGTCTAAATAGTT-TGTCAATTTGTAGACAA
381 CTCGGGAAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * *
18543636 ATTTTGTTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT-CCTTGCCGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTT-CCGA
*
18543700 ACTACCGAACTTGTCAAACTTTTAC-AGTTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGA
64 ACTACCGAACTTGTCAAACTTTTACGA-TTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
18543764 CG-TCCCATTCATTCGAGCAATCTTTCGATCATTCCATGCTCGAGCAATCGCATCATTTGGTCTA
128 CGAT-CCATTCCTTCGAGCAAT-TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTA
* * * * * * *
18543828 ACTAGTTTGTCATTTTGTAAACAA-TATTTGGTTTTTGACTTAAAACCTTATTTACGTGAGAATT
191 AATAGTTTGTCATTTTATAAACAACT-TTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATC
* * ** * * * * * * *
18543892 GTTTCACTCTTGGCCCTTGGACAAACTTTCAAACTTTTCAAACTTTTACGAGTTATTTCAAAACT
255 ATTTCTCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * ** * * *
18543957 TTGGTTCCTTAAAGCATTCAAGACT-AACCATTCCCTCGAGCAATTTTTCGAACAGTTCGTGCTC
320 TTGGTTCCTTAAAGTATTCAAGA-TGACCCATTCATTCGAACAATTTTTCGAACATTTCATGCTC
* * *
18544021 GAGAAATCGA-ATCTTTTGGTCTAAATAG--CGTGTCATTTTGTAAACAA
384 GGGAAATC-ACATCATTTGGTCTAAATAGTTC-TGTCAATTTGTAAACAA
* * *
18544068 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTAT-GTT-CTTGTCCA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCCCT-TCCG
* * * * * ** * *
18544131 AACTTCCAAACTTTTCAATCTTTTACGAGTTCTTTTATATTTTCGGTTCCTCAAAGTTTTCAAGA
63 AACTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * *
18544196 CGATCCAATCCTTGGAGCAATTTTTTGAACATTCCATGCTCGGGGAGTCGCATCATTTTGTCTAA
128 CGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAA
* *
18544261 ATATTTTTTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAA-TTATTTACGTGAGAATCAT
192 ATAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCAT
* * * * * *
18544325 TTCCCTTTTGGTTCTT-GTCTGAACTTTCAAACTTGTCATATTTTTACGAGTTCTTTTATAACTT
257 TTCTCTCTTGGTTCTTGGCCT-AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * * * * * *
18544389 CGGTTCCTTAAAGTAATCAAAATGATCTATTCCTTTGAATAATTTTTCGAACTTTTCAAGCTCGG
321 TGGTTCCTTAAAGTATTCAAGATGACCCATTCATTCGAACAATTTTTCGAACATTTCATGCTCGG
* *
18544454 GAAATCACATCTTTTGGTCTAACTAGTTCT-TCAATTTGTAAACAA
386 GAAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * *
18544499 CTTTTGGTCTTTGACATAAAAACTTATTTACGTGTGAATTGTTTCTCTCTTGATTCCCTTCTGAA
1 CTTTTGGTCTTTGA-ATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
* * * ** * *
18544564 CTACCGAACTTATCAAACTTTTGCGATTTCTTTTATAAGTTTAGTTCCTTAAAGTATTTAAGACA
65 CTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
18544629 ATCCATTCGTTCGAGCAATTTTTGAACA-TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
130 ATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATA
* * * * * * **
18544693 GTTTATAATTTTGTAAATAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
195 GTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTC
* * * * ***
18544758 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAAATTTTATGACTTCTTTTATAACTTCAAT
260 TCTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* * * * * * *
18544823 TCCCTAAAGTATCCAAGATGACCCATTCATTCGAGCAA-TATTCTGAACATTCCATTCTCGGCAA
325 TCCTTAAAGTATTCAAGATGACCCATTCATTCGAACAATTTTTC-GAACATTTCATGCTCGGGAA
* *
18544887 AT-AGAATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
389 ATCA-CATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
* * * * * * *** *
18544929 CTTTTGGTATTTGAATTAAAAACTTATTTACGAGAGAAATGTTTCTCCCTTGGCTCTCGGACGGA
1 CTTTTGGTCTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAA
** * * * * *
18544994 CTTTCGAACTTGTCAAACTTTTATGAATTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACT
65 CTACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
18545059 ATCGATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCAGT-ATTTTGTCTAAA
130 ATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCA-TCATTTTGTCTAAA
* * * ** **
18545123 TACTTTGTCATTTTATAAAAAACTTTTAGCCTTTGAATTAAAAGGTTATTTTTGTGAGAATCATT
193 TAGTTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATT
* ** * *
18545188 GCTCTCTTGGTTCTT-ATCTGAAGTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAA-TTT
258 TCTCTCTTGGTTCTTGGCCT-AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT
* * ** * *
18545251 CAGTTCATTAATTTATTCAAGATG-CTCCATTCCTTCGAACAATTTTTCGAACATTTTA-GACTC
322 -GGTTCCTTAAAGTATTCAAGATGAC-CCATTCATTCGAACAATTTTTCGAACATTTCATG-CTC
* * *
18545314 GAGAAATCGCATCATTTGGTCTAAATAGTTC-ATCAATTTGTAAACAA
384 GGGAAATCACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
** * * * *
18545361 AATTTGGTCTTCGTATTAAGAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTT-CCTTGCC-A
1 CTTTTGGTCTTTG-AATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTT-CCGA
* * * * * * *
18545424 AATAACCGAACTTGTCAAACTTTTATGATTTGTTTCATAACTTTGGTTCCATAAAGTATTCAACA
64 ACT-ACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* *
18545489 CGATCCATTCCTTCGTGAAATTTT
128 CGATCCATTCCTTCGAGCAATTTT
18545513 CGAATGATTA
Statistics
Matches: 2929, Mismatches: 556, Indels: 208
0.79 0.15 0.06
Matches are distributed among these distances:
415 2 0.00
416 74 0.03
417 9 0.00
418 101 0.03
419 136 0.05
420 11 0.00
421 2 0.00
423 3 0.00
424 1 0.00
425 1 0.00
426 1 0.00
427 1 0.00
428 5 0.00
429 78 0.03
430 371 0.13
431 1107 0.38
432 828 0.28
433 116 0.04
434 82 0.03
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (431 bp):
CTTTTGGTCTTTGAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCCTTCCGAAC
TACCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAG
TTTGTCATTTTATAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATCATTTCT
CTCTTGGTTCTTGGCCTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT
CCTTAAAGTATTCAAGATGACCCATTCATTCGAACAATTTTTCGAACATTTCATGCTCGGGAAAT
CACATCATTTGGTCTAAATAGTTCTGTCAATTTGTAAACAA
Found at i:18545972 original size:25 final size:23
Alignment explanation
Indices: 18545931--18545976 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
18545921 TCAATTAGAG
18545931 AATTATTGTTTAGATTTAATTCT
1 AATTATTGTTTAGATTTAATTCT
*
18545954 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TGTTTAG-ATTTAATT
18545977 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTCT
Found at i:18549886 original size:12 final size:13
Alignment explanation
Indices: 18549871--18549899 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18549861 TTCATTTTTT
18549871 AAAAAAA-TTGAA
1 AAAAAAATTTGAA
18549883 AAAAAAATTTGAA
1 AAAAAAATTTGAA
18549896 AAAA
1 AAAA
18549900 TTTGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAAAAATTTGAA
Found at i:18549910 original size:9 final size:10
Alignment explanation
Indices: 18549884--18549908 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
18549874 AAAATTGAAA
18549884 AAAAAATTTG
1 AAAAAATTTG
18549894 AAAAAATTTG
1 AAAAAATTTG
18549904 AAAAA
1 AAAAA
18549909 TTCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAAAATTTG
Found at i:18549968 original size:21 final size:20
Alignment explanation
Indices: 18549927--18549964 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18549917 AAATAGTACA
18549927 TTTATTATCATTTATTTTAT
1 TTTATTATCATTTATTTTAT
18549947 TTTATTATGCA-TTATTTT
1 TTTATTAT-CATTTATTTT
18549965 TATTCCTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTATTATCATTTATTTTAT
Found at i:18550896 original size:14 final size:12
Alignment explanation
Indices: 18550878--18550923 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 12
18550868 AAAGTCGAGA
18550878 AGAAAAAAATTG
1 AGAAAAAAATTG
18550890 ATTGAAAAAAAATTG
1 A--G-AAAAAAATTG
18550905 AGAAAAAAA--G
1 AGAAAAAAATTG
18550915 AGAAAAAAA
1 AGAAAAAAA
18550924 GAAGAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.32
12 8 0.26
13 1 0.03
14 1 0.03
15 11 0.35
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (12 bp):
AGAAAAAAATTG
Found at i:18550909 original size:13 final size:14
Alignment explanation
Indices: 18550880--18550913 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
18550870 AGTCGAGAAG
18550880 AAAAAAATTGATTGA
1 AAAAAAATTGA-TGA
18550895 AAAAAAATTGA-GA
1 AAAAAAATTGATGA
18550908 AAAAAA
1 AAAAAA
18550914 GAGAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18
Consensus pattern (14 bp):
AAAAAAATTGATGA
Found at i:18553326 original size:217 final size:215
Alignment explanation
Indices: 18552953--18553552 Score: 744
Period size: 216 Copynumber: 2.8 Consensus size: 215
18552943 GCATCACCAT
* * *
18552953 ACATTCCATGGTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTATAAATAGCTTTT
1 ACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAACTTTT
* * *
18553018 GGTCTTTGAATTAAAAA-TATATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGTCGAACTTT
66 GGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTT
* * * **
18553082 CGAACTTGTCAAAATTTTATGAGTTCTTTATAAC-TCTGAATCC-TAAAATTATTCAAGACGGTC
130 CGAACTTGTCAAAATTTTACGAGTTCTTTATAACTTC-GAATCCTTAAAACT-TTCAACACGACC
* * *
18553145 CATTCCTTTGAG-AATTTTCTCAA
193 CAATCATTCGAGAAATTTTC-CAA
* * *
18553168 ACATTCCATGCTTGGGAAATCATATCATTTCGTCTAAATAGTTTGTCATTTTTTTTAAACAACTT
1 ACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCA--TTTTATAAACAACTT
* * * *
18553233 TTGGT-TCATGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGCCAAACT
64 TTGGTCT-TTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* *
18553297 TTCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGCTTTCAACACGAC
128 TTCGAACTTGTCAAAATTTTACGAGTTC-TTTATAACTTCGAATCCTTAAAACTTTCAACACGAC
*
18553362 CCAATCATTCGAGAAATTTTCCGA
192 CCAATCATTCGAGAAATTTTCCAA
** * *
18553386 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAACTTTT
* * *
18553451 GGTCTTTGAATTAAAAACTTATTTACGTGATAATTATTTCTCTATT-GTCTCTTGGACGAACTTA
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGT-TCTTGGACGAACTTT
* * * * *
18553515 AGAACTTGTCAAAGTTTAACAAGTTCTTTCAAAACTTC
130 CGAACTTGTCAAAATTTTACGAGTTCTTT-ATAACTTC
18553553 AGTTAAAGCA
Statistics
Matches: 333, Mismatches: 41, Indels: 21
0.84 0.10 0.05
Matches are distributed among these distances:
215 50 0.15
216 98 0.29
217 94 0.28
218 77 0.23
219 14 0.04
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
ACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC
GAACTTGTCAAAATTTTACGAGTTCTTTATAACTTCGAATCCTTAAAACTTTCAACACGACCCAA
TCATTCGAGAAATTTTCCAA
Found at i:18554042 original size:23 final size:25
Alignment explanation
Indices: 18554016--18554061 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18554006 CCAATTAGGG
18554016 AATTAT-TGTTTAG-ATTTAATTCA
1 AATTATCTGTTTAGAATTTAATTCA
*
18554039 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
18554062 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCA
Found at i:18558037 original size:5 final size:5
Alignment explanation
Indices: 18558008--18558060 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
18557998 AATTAGTATA
* *
18558008 TTTAT TTTCAT TTTCAT TTTTT TTTGT TTTAT TTTATT TTTAAT TTTAT
1 TTTAT TTT-AT TTT-AT TTTAT TTTAT TTTAT TTTA-T TTT-AT TTTAT
18558057 TTTA
1 TTTA
18558061 ATTATGCAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 22 0.52
6 19 0.45
7 1 0.02
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:18558047 original size:17 final size:17
Alignment explanation
Indices: 18558008--18558060 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
18557998 AATTAGTATA
*
18558008 TTTA-TTTTCATTTTCAT
1 TTTATTTTTAATTTT-AT
*
18558025 TTT-TTTTT-GTTTTAT
1 TTTATTTTTAATTTTAT
18558040 TTTATTTTTAATTTTAT
1 TTTATTTTTAATTTTAT
18558057 TTTA
1 TTTA
18558061 ATTATGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 5 0.16
16 9 0.29
17 17 0.55
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTTAATTTTAT
Found at i:18558048 original size:27 final size:27
Alignment explanation
Indices: 18558008--18558059 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
18557998 AATTAGTATA
* *
18558008 TTTATTTTCATTTTCATTTTTTTTTGT
1 TTTATTTTCATTTTAATTTTATTTTGT
18558035 TTTATTTT-ATTTTTAATTTTATTTT
1 TTTATTTTCA-TTTTAATTTTATTTT
18558060 AATTATGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTATTTTCATTTTAATTTTATTTTGT
Found at i:18558063 original size:11 final size:10
Alignment explanation
Indices: 18558008--18558060 Score: 52
Period size: 11 Copynumber: 4.9 Consensus size: 10
18557998 AATTAGTATA
18558008 TTTATTTTCAT
1 TTTATTTT-AT
*
18558019 TTTCATTTTTT
1 TTT-ATTTTAT
*
18558030 TTTGTTTTAT
1 TTTATTTTAT
18558040 TTTATTTTTAAT
1 TTTA-TTTT-AT
18558052 TTTATTTTA
1 TTTATTTTA
18558061 ATTATGCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 9 0.26
11 15 0.43
12 11 0.31
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:18559016 original size:15 final size:15
Alignment explanation
Indices: 18558993--18559028 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
18558983 AAAAAAATCG
18558993 AAAAAAATTGA-AAA
1 AAAAAAATTGAGAAA
18559007 AAAAAGAATTGAGAAA
1 AAAAA-AATTGAGAAA
18559023 AAAAAA
1 AAAAAA
18559029 GCAAAAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 7 0.35
16 8 0.40
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (15 bp):
AAAAAAATTGAGAAA
Found at i:18576291 original size:20 final size:19
Alignment explanation
Indices: 18576267--18576314 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
18576257 TTTTAAACCC
* *
18576267 AAATTAATTATTTTCACTA
1 AAATTAATTAATTACACTA
* *
18576286 ATAATTATTTAATTACTCTA
1 A-AATTAATTAATTACACTA
18576306 AAATTAATT
1 AAATTAATT
18576315 TTTCAAACAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (19 bp):
AAATTAATTAATTACACTA
Found at i:18578179 original size:3 final size:3
Alignment explanation
Indices: 18578171--18578207 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
18578161 ACTATTTTAT
18578171 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
18578208 AAATGAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:18579063 original size:26 final size:26
Alignment explanation
Indices: 18579034--18579087 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
18579024 TATTATTATT
18579034 AGGATAAGAACTAAATCACAAGATTA
1 AGGATAAGAACTAAATCACAAGATTA
18579060 AGGATAAGAACTAAATCACAAGATTA
1 AGGATAAGAACTAAATCACAAGATTA
18579086 AG
1 AG
18579088 CAAACTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.19
Consensus pattern (26 bp):
AGGATAAGAACTAAATCACAAGATTA
Found at i:18580466 original size:38 final size:38
Alignment explanation
Indices: 18580427--18580595 Score: 223
Period size: 38 Copynumber: 4.4 Consensus size: 38
18580417 AAGGCCGACC
*
18580427 TTTAAAAATGGTTGGGATAGGTCTTGTCTAAGGCAACCT
1 TTTAAAAA-GGTTGGGATAGATCTTGTCTAAGGCAACCT
* * **
18580466 TTTAAAAACGTTGGGATAGACCTTGTCTAAATCAACCT
1 TTTAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCT
* * *
18580504 TTTAAAAAGGTTGGAATAAATATTGTCTAAGGCAACCT
1 TTTAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCT
*
18580542 TTTAAAAACGTTGGGATAGA-CTTTGTCTAAGGCAACCT
1 TTTAAAAAGGTTGGGATAGATC-TTGTCTAAGGCAACCT
*
18580580 TTAAAAAAGGTTGGGA
1 TTTAAAAAGGTTGGGA
18580596 ACATCCATTA
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
38 103 0.93
39 8 0.07
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (38 bp):
TTTAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCT
Found at i:18580505 original size:76 final size:75
Alignment explanation
Indices: 18580424--18580595 Score: 254
Period size: 76 Copynumber: 2.3 Consensus size: 75
18580414 GTTAAGGCCG
** *
18580424 ACCTTTAAAAATGGTTGGGATAGGTCTTGTCTAAGGCAACCTTTTAAAAACGTTGGGATAGACCT
1 ACCTTTAAAAA-GGTTGGGATAAATATTGTCTAAGGCAACCTTTTAAAAACGTTGGGATAGACCT
*
18580489 TGTCTAAATCA
65 TGTCTAAAGCA
* *
18580500 ACCTTTTAAAAAGGTTGGAATAAATATTGTCTAAGGCAACCTTTTAAAAACGTTGGGATAGACTT
1 ACC-TTTAAAAAGGTTGGGATAAATATTGTCTAAGGCAACCTTTTAAAAACGTTGGGATAGACCT
*
18580565 TGTCTAAGGCA
65 TGTCTAAAGCA
18580576 ACCTTTAAAAAAGGTTGGGA
1 ACCTTT-AAAAAGGTTGGGA
18580596 ACATCCATTA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 3 0.03
76 75 0.87
77 8 0.09
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (75 bp):
ACCTTTAAAAAGGTTGGGATAAATATTGTCTAAGGCAACCTTTTAAAAACGTTGGGATAGACCTT
GTCTAAAGCA
Found at i:18583625 original size:9 final size:9
Alignment explanation
Indices: 18583613--18583673 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
18583603 TTTTTATGCA
18583613 TTTTATAAT
1 TTTTATAAT
*
18583622 TTTTATGAT
1 TTTTATAAT
*
18583631 TTTAATAAAT
1 TTTTAT-AAT
*
18583641 TTTTACAAT
1 TTTTATAAT
*
18583650 ATTTATAAAT
1 TTTTAT-AAT
* *
18583660 TTTTTTATT
1 TTTTATAAT
18583669 TTTTA
1 TTTTA
18583674 ATAAAATTAA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
9 26 0.67
10 13 0.33
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18583641 original size:19 final size:18
Alignment explanation
Indices: 18583603--18583663 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
18583593 TAAAGGGTCT
18583603 TTTTTATGCATTTTAT-AA
1 TTTTTATG-ATTTTATAAA
18583621 TTTTTATGATTTTAATAAA
1 TTTTTATGATTTT-ATAAA
**
18583640 TTTTTACAATATTTATAAA
1 TTTTTATGAT-TTTATAAA
18583659 TTTTT
1 TTTTT
18583664 TTATTTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
17 5 0.13
18 10 0.26
19 20 0.53
20 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTTATGATTTTATAAA
Found at i:18583710 original size:19 final size:19
Alignment explanation
Indices: 18583667--18583710 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
18583657 AATTTTTTTA
18583667 TTTTTTAATAAAATTAAAT
1 TTTTTTAATAAAATTAAAT
* * *
18583686 ATTTTTATTAAAATTTAAT
1 TTTTTTAATAAAATTAAAT
18583705 TTTTTT
1 TTTTTT
18583711 TTTTATAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTTAATAAAATTAAAT
Found at i:18583711 original size:20 final size:20
Alignment explanation
Indices: 18583667--18583721 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
18583657 AATTTTTTTA
*
18583667 TTTTTTAATAAAA-TTAAAT
1 TTTTTTATTAAAATTTAAAT
* *
18583686 ATTTTTATTAAAATTTAATT
1 TTTTTTATTAAAATTTAAAT
* *
18583706 TTTTTTTTTATAATTT
1 TTTTTTATTAAAATTT
18583722 TTGCCACATG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTTATTAAAATTTAAAT
Found at i:18588423 original size:38 final size:38
Alignment explanation
Indices: 18588367--18588721 Score: 402
Period size: 38 Copynumber: 9.4 Consensus size: 38
18588357 TAATGGATGT
* * * *
18588367 TCCCAACCTTTTTTAAAGGTTACCTTAGACAAAGACTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* *
18588405 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAATGTTTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* *
18588443 TTCCAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* *
18588481 TCCCAACCTTTTT--AAGGTTACCTTAGA-AGGGTCTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* * * * *
18588516 TCCTAATCTTTTTTAAAAGTTTGCCATAGACAAGAGGTATA
1 TCCCAA-CCTTTTTAAAAGGTTGCCTTAGAC-A-AGGTCTA
* *
18588557 TCCCAACCTTTTT--AAGGTTGCTTTAGACAAGGTTTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* *
18588593 TCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
*
18588631 TCCCAACCTTTTT--AAGGTTGCCTTAGAC-GGGTCTA
1 TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
* **
18588666 TCCCAACCTATTTTAAAAGGTTTCCTTAGACAAGACCTA
1 TCCCAACCT-TTTTAAAAGGTTGCCTTAGACAAGGTCTA
18588705 TCCCAACCGTTTTTAAA
1 TCCCAACC-TTTTTAAA
18588722 GGTCGGCCTT
Statistics
Matches: 269, Mismatches: 35, Indels: 25
0.82 0.11 0.08
Matches are distributed among these distances:
35 27 0.10
36 55 0.20
37 1 0.00
38 149 0.55
39 19 0.07
40 8 0.03
41 10 0.04
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (38 bp):
TCCCAACCTTTTTAAAAGGTTGCCTTAGACAAGGTCTA
Found at i:18588574 original size:112 final size:113
Alignment explanation
Indices: 18588367--18588724 Score: 419
Period size: 112 Copynumber: 3.2 Consensus size: 113
18588357 TAATGGATGT
* *
18588367 TCCCAACCTTTTTTAAAGGTTACCTTAGACAAAGACTATCCCAACCTTTTTAAAAGGTTGCCTTA
1 TCCCAACCTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAACCTTTTTAAAAGGTTGCCTTA
* * *
18588432 GACA-ATGTTTATTCCAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTA
66 GACAGAGGTATATCCCAACCTTTTT-AAAGGTTG-CTTAGACAAGGTCTA
* * * * *
18588481 TCCCAACC-TTTTT-AAGGTTACCTTAGA-AGGGTCTATCCTAATCTTTTTTAAAAGTTTGCCAT
1 TCCCAACCTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAA-CCTTTTTAAAAGGTTGCCTT
*
18588543 AGACAAGAGGTATATCCCAACCTTTTT-AAGGTTGCTTTAGACAAGGTTTA
65 AGAC-AGAGGTATATCCCAACCTTTTTAAAGGTTGC-TTAGACAAGGTCTA
* *
18588593 TCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTT--AAGGTTGCCTTA
1 TCCCAACCTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAACCTTTTTAAAAGGTTGCCTTA
* * **
18588656 GAC-G-GGTCTATCCCAACCTATTTTAAAAGGTTTCCTTAGACAAGACCTA
66 GACAGAGGTATATCCCAACCT-TTTT-AAAGG-TTGCTTAGACAAGGTCTA
*
18588705 TCCCAACCGTTTTTAAAGGT
1 TCCCAACCTTTTTTAAAGGT
18588725 CGGCCTTAAC
Statistics
Matches: 208, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
109 14 0.07
110 5 0.02
111 11 0.05
112 108 0.52
113 14 0.07
114 44 0.21
115 12 0.06
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (113 bp):
TCCCAACCTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAACCTTTTTAAAAGGTTGCCTTA
GACAGAGGTATATCCCAACCTTTTTAAAGGTTGCTTAGACAAGGTCTA
Found at i:18588646 original size:150 final size:151
Alignment explanation
Indices: 18588367--18588741 Score: 473
Period size: 150 Copynumber: 2.5 Consensus size: 151
18588357 TAATGGATGT
* * *
18588367 TCCCAACCT-TTTTTAAAGGTTACCTTAGACAA-A-G-ACTATCCCAACCTTTTTAAAAGGTTGC
1 TCCCAACCTATTTTAAAAGGTTTCCATAGACAAGAGGTA-TATCCCAACCTTTTT-AAAGGTTGC
*
18588428 CTTAGACAATGTTTATTCCAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTATCCCAACCTTTT
64 CTTAGACAAGGTTTATTCCAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTATCCCAACCTTTT
18588493 TAAGGTTACCTTAGAAGGGTCTA
129 TAAGGTTACCTTAGAAGGGTCTA
* * * *
18588516 TCCTAATCTTTTTTAAAA-GTTTGCCATAGACAAGAGGTATATCCCAACCTTTTT-AAGGTTGCT
1 TCCCAACCTATTTTAAAAGGTTT-CCATAGACAAGAGGTATATCCCAACCTTTTTAAAGGTTGCC
* *
18588579 TTAGACAAGGTTTA-TCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTT
65 TTAGACAAGGTTTATTC-CAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTATCCCAACCTTTT
* *
18588643 TAAGGTTGCCTTAGACGGGTCTA
129 TAAGGTTACCTTAGAAGGGTCTA
* ** *
18588666 TCCCAACCTATTTTAAAAGGTTTCCTTAGACAAGA--CCTATCCCAACCGTTTTTAAAGGTCGGC
1 TCCCAACCTATTTTAAAAGGTTTCCATAGACAAGAGGTATATCCCAACC-TTTTTAAAGGT-TGC
*
18588729 CTTA-ACTAGGTTT
64 CTTAGACAAGGTTT
18588742 TTGCTAACCC
Statistics
Matches: 196, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
148 10 0.05
149 17 0.09
150 142 0.72
151 10 0.05
152 16 0.08
153 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (151 bp):
TCCCAACCTATTTTAAAAGGTTTCCATAGACAAGAGGTATATCCCAACCTTTTTAAAGGTTGCCT
TAGACAAGGTTTATTCCAACCTTTTTAAAAGGTTGACTTAGACAAGGTCTATCCCAACCTTTTTA
AGGTTACCTTAGAAGGGTCTA
Found at i:18594136 original size:18 final size:19
Alignment explanation
Indices: 18594115--18594158 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
18594105 TTCAAGGATA
18594115 AAAAGCACAGA-AAGGAAG
1 AAAAGCACAGAGAAGGAAG
18594133 AAAAG-A-AGAGAAGGAAG
1 AAAAGCACAGAGAAGGAAG
18594150 AAGAAGCAC
1 AA-AAGCAC
18594159 CATGCAGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 8 0.36
19 1 0.05
ACGTcount: A:0.61, C:0.09, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGCACAGAGAAGGAAG
Found at i:18603267 original size:26 final size:26
Alignment explanation
Indices: 18603238--18603288 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18603228 ATTAGGCACT
18603238 TGAACTTTCAAAATGCATCAAAAAAA
1 TGAACTTTCAAAATGCATCAAAAAAA
*
18603264 TGAACTTTTAAAATGCATCAAAAAA
1 TGAACTTTCAAAATGCATCAAAAAA
18603289 CCCTCAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.25
Consensus pattern (26 bp):
TGAACTTTCAAAATGCATCAAAAAAA
Found at i:18604754 original size:99 final size:100
Alignment explanation
Indices: 18604583--18604799 Score: 339
Period size: 99 Copynumber: 2.2 Consensus size: 100
18604573 TAATTTAAAC
* *
18604583 AAAAATAAGCACAAT-AAATTATAAAGAAGGAAAAATAAAAGAAGTAACAAAGAGATTAATACAA
1 AAAAATAAACACAATAAAATTATAAAGAAGGAAAAATAAAAGAAATAACAAAGAGATTAATACAA
* *
18604647 CAATTTTTATCCTAGCAAAATTGAAATCGAGAT-A
66 CAAATTTTATCCTAGCAAAATTGAAATCAAGATAA
* * *
18604681 AAAAATAAACACAATAAAATTATAAAGAAGGAAAATTAAAATAAATAACAAAGAGATTAATATAA
1 AAAAATAAACACAATAAAATTATAAAGAAGGAAAAATAAAAGAAATAACAAAGAGATTAATACAA
*
18604746 CAAATTTTATCCTAGCAAAATTGAATTCAAGATAA
66 CAAATTTTATCCTAGCAAAATTGAAATCAAGATAA
*
18604781 AAAAATAAAAACAATAAAA
1 AAAAATAAACACAATAAAA
18604800 CCTTATCCAA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
98 14 0.13
99 75 0.69
100 19 0.18
ACGTcount: A:0.61, C:0.08, G:0.09, T:0.22
Consensus pattern (100 bp):
AAAAATAAACACAATAAAATTATAAAGAAGGAAAAATAAAAGAAATAACAAAGAGATTAATACAA
CAAATTTTATCCTAGCAAAATTGAAATCAAGATAA
Found at i:18606347 original size:33 final size:33
Alignment explanation
Indices: 18606301--18606395 Score: 118
Period size: 33 Copynumber: 2.9 Consensus size: 33
18606291 ACATAAGTTT
*
18606301 TTGGAACAACTATTAGGGAAGCTTCATCAATGA
1 TTGGAACATCTATTAGGGAAGCTTCATCAATGA
* * *
18606334 TTGGAACATCTATTAGGGCAGCTTCAACATTGA
1 TTGGAACATCTATTAGGGAAGCTTCATCAATGA
* ** *
18606367 TTGGAACATCTCTCGGGGTAGCTTCATCA
1 TTGGAACATCTATTAGGGAAGCTTCATCA
18606396 TTCTGTTCGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (33 bp):
TTGGAACATCTATTAGGGAAGCTTCATCAATGA
Found at i:18629001 original size:40 final size:42
Alignment explanation
Indices: 18628913--18629012 Score: 141
Period size: 40 Copynumber: 2.4 Consensus size: 42
18628903 TTATGCTCTA
* *
18628913 TCGAGTCATAAGTCTTCCTTTAACCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCTCATC
* *
18628955 TCGAGACATGAGTCTTCC-TTAATCA-AATCTCATTCTCATT
1 TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCTCATC
*
18628995 TTGAGACATGAGTCTTCC
1 TCGAGACATGAGTCTTCC
18629013 ATTTTTTACA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
40 31 0.58
41 6 0.11
42 16 0.30
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (42 bp):
TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCTCATC
Found at i:18629906 original size:22 final size:21
Alignment explanation
Indices: 18629859--18629906 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
18629849 GACTTTCGTA
*
18629859 ATTAACTTAATTAATCATCTT
1 ATTAACTTAATTAATCATATT
* *
18629880 TTTAACCTTAATTAATCCTATT
1 ATTAA-CTTAATTAATCATATT
18629902 ATTAA
1 ATTAA
18629907 TCAATATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:18634062 original size:391 final size:390
Alignment explanation
Indices: 18633342--18634123 Score: 1528
Period size: 391 Copynumber: 2.0 Consensus size: 390
18633332 AAGTAGGGAG
18633342 AAAACATATGTTCTTTCTAGTACTATCAAATGCAATATGTGTTGTTGTGCACTCTATCACCAACT
1 AAAACATATGTTCTTTCTAGTACTATCAAATGCAATATGTGTTGTTGTGCACTCTATCACCAACT
18633407 ATATGCCTGATATCCTTTTCGATCTAATCACCTAGTCATAGGAGCCCCACAACCTTACCATTTAT
66 ATATGCCTGATATCCTTTTCGATCTAATCACCTAGTCATAGGAGCCCCACAACCTTACCATTTAT
18633472 CCTATGAAGTAAAGTTGTTATTGGTTGGGACCCACAATCAGCTCACCTCCAAATCCACTATCTAT
131 CCTATGAAGTAAAGTTGTTATTGGTTGGGACCCACAATCAGCTCACCTCCAAATCCACTATCTAT
18633537 ATAAGACCTCTTTCTCTTGAGAAGGAGTGAAGGATCTCTTCCCTCAAAAAAACTATTATCTATTA
196 ATAAGACCTCTTTCTCTTGAGAAGGAGTGAAGGATCTCTTCCCTCAAAAAAACTATTATCTATTA
18633602 TATTTACCTCACCCCATCTCACCTTATCGCTCTTGACACCCCCACCATGGTGTGAATAGACCTTG
261 TATTTACCTCACCCCATCTCACCTTATCGCTCTTGACACCCCCACCATGGTGTGAATAGACCTTG
18633667 TCGACCACCCTCTTGTTGGTGTTTGCGGATAAAAATAAACTTATGAGAAATTAATGAAAGCTTCA
326 TCGACCACCCTCTTGTTGGTGTTTGCGGATAAAAATAAACTTATGAGAAATTAATGAAAGCTTCA
18633732 AAAACATATGTTCTTTCTAGTACTATCAAATGCAATATGTGTTGTTGTGCACTCTATCACCAACT
1 AAAACATATGTTCTTTCTAGTACTATCAAATGCAATATGTGTTGTTGTGCACTCTATCACCAACT
*
18633797 ATATGCTTGATATCCTTTTCGATCTAATCACCTAGTCATAGGAGCCCCCACAACCTTACCATTTA
66 ATATGCCTGATATCCTTTTCGATCTAATCACCTAGTCATAGGAG-CCCCACAACCTTACCATTTA
18633862 TCCTATGAAGTAAAGTTGTTATTGGTTGGGACCCACAATCAGCTCACCTCCAAATCCACTATCTA
130 TCCTATGAAGTAAAGTTGTTATTGGTTGGGACCCACAATCAGCTCACCTCCAAATCCACTATCTA
*
18633927 TATAAGACCTCTTTCTCTTGAGAAGGAGTGGAGGATCTCTTCCCTCAAAAAAACTATTATCTATT
195 TATAAGACCTCTTTCTCTTGAGAAGGAGTGAAGGATCTCTTCCCTCAAAAAAACTATTATCTATT
*
18633992 ATATTTACCTCACCCCATCTCACCTTATTGCTCTTGACACCCCCACCATGGTGTGAATAGACCTT
260 ATATTTACCTCACCCCATCTCACCTTATCGCTCTTGACACCCCCACCATGGTGTGAATAGACCTT
18634057 GTCGACCACCCTCTTGTTGGTGTTTGCGGATAAAAATAAACTTATGAGAAATTAATGAAAGCTTC
325 GTCGACCACCCTCTTGTTGGTGTTTGCGGATAAAAATAAACTTATGAGAAATTAATGAAAGCTTC
18634122 A
390 A
18634123 A
1 A
18634124 GATGTGTATC
Statistics
Matches: 388, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
390 108 0.28
391 280 0.72
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (390 bp):
AAAACATATGTTCTTTCTAGTACTATCAAATGCAATATGTGTTGTTGTGCACTCTATCACCAACT
ATATGCCTGATATCCTTTTCGATCTAATCACCTAGTCATAGGAGCCCCACAACCTTACCATTTAT
CCTATGAAGTAAAGTTGTTATTGGTTGGGACCCACAATCAGCTCACCTCCAAATCCACTATCTAT
ATAAGACCTCTTTCTCTTGAGAAGGAGTGAAGGATCTCTTCCCTCAAAAAAACTATTATCTATTA
TATTTACCTCACCCCATCTCACCTTATCGCTCTTGACACCCCCACCATGGTGTGAATAGACCTTG
TCGACCACCCTCTTGTTGGTGTTTGCGGATAAAAATAAACTTATGAGAAATTAATGAAAGCTTCA
Found at i:18647729 original size:40 final size:42
Alignment explanation
Indices: 18647643--18647740 Score: 137
Period size: 40 Copynumber: 2.4 Consensus size: 42
18647633 TTATGCTCTA
* * *
18647643 TCGAGTCATAAGTCTTCCTTTAACCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCGCATC
* *
18647685 TCGAGACATGAGTCTTCC-TTAATCA-AATCTCATTCGCATT
1 TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCGCATC
18647725 TCGAGACATGAGTCTT
1 TCGAGACATGAGTCTT
18647741 ACATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 29 0.57
41 6 0.12
42 16 0.31
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.36
Consensus pattern (42 bp):
TCGAGACATGAGTCTTCCTTTAACCATAATCTCATTCGCATC
Found at i:18653555 original size:33 final size:33
Alignment explanation
Indices: 18653470--18653556 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
18653460 CATAAGTGAT
* *
18653470 TATCAGGGCAGCTTCATCAATGATTGGAACATC
1 TATCATGGCAGCTTCATCATTGATTGGAACATC
* *
18653503 TATCATGGCAGCTTTATCATTGATTTGAACATC
1 TATCATGGCAGCTTCATCATTGATTGGAACATC
*
18653536 TCTCGA-GGCAGCTTCATCATT
1 TATC-ATGGCAGCTTCATCATT
18653557 CTGTTCGCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 46 0.98
34 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (33 bp):
TATCATGGCAGCTTCATCATTGATTGGAACATC
Found at i:18658460 original size:41 final size:41
Alignment explanation
Indices: 18658403--18658499 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
18658393 TGAATTTTAT
18658403 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
1 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
*
18658444 TTTAACAAGAATTCTAGTCACCCAATTTTAACAATCTCCAC
1 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
* *
18658485 CTTGACAAGAATTCT
1 TTTAACAAGAATTCT
18658500 CTACGAACAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (41 bp):
TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
Found at i:18664514 original size:36 final size:36
Alignment explanation
Indices: 18664445--18664524 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
18664435 TCCATCAAGC
* **
18664445 CCAAATCCCATTTAAACCAAACCCACATTCATTTAAA
1 CCAAA-CCCATTTAAACCAAACCCAAACCCATTTAAA
*
18664482 CCAAACCCATTTAAAACCAAA-CCAAACCCATTTGAA
1 CCAAACCCATTT-AAACCAAACCCAAACCCATTTAAA
18664518 CCAAACC
1 CCAAACC
18664525 AATTGAACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 25 0.66
37 13 0.34
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (36 bp):
CCAAACCCATTTAAACCAAACCCAAACCCATTTAAA
Found at i:18664521 original size:20 final size:21
Alignment explanation
Indices: 18664479--18664526 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
18664469 ACATTCATTT
18664479 AAACCAAACCCATTTAAAACC
1 AAACCAAACCCATTTAAAACC
*
18664500 AAACCAAACCCATTT-GAACC
1 AAACCAAACCCATTTAAAACC
18664520 AAACCAA
1 AAACCAA
18664527 TTGAACCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.52, C:0.33, G:0.02, T:0.12
Consensus pattern (21 bp):
AAACCAAACCCATTTAAAACC
Found at i:18664532 original size:14 final size:15
Alignment explanation
Indices: 18664501--18664535 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
18664491 TTTAAAACCA
*
18664501 AACCAAACCCATTTG
1 AACCAAACCCAATTG
18664516 AACCAAA-CCAATTG
1 AACCAAACCCAATTG
18664530 AACCAA
1 AACCAA
18664536 GTCCAACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.49, C:0.31, G:0.06, T:0.14
Consensus pattern (15 bp):
AACCAAACCCAATTG
Found at i:18664572 original size:10 final size:11
Alignment explanation
Indices: 18664557--18664596 Score: 57
Period size: 10 Copynumber: 3.8 Consensus size: 11
18664547 ACTAAGTCAA
18664557 ACCGTTGACCG
1 ACCGTTGACCG
18664568 A-CGTTGACC-
1 ACCGTTGACCG
*
18664577 ACCGTTAACCG
1 ACCGTTGACCG
18664588 ACCGTTGAC
1 ACCGTTGAC
18664597 TTTAACTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 1 0.04
10 15 0.60
11 9 0.36
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.20
Consensus pattern (11 bp):
ACCGTTGACCG
Found at i:18664582 original size:20 final size:21
Alignment explanation
Indices: 18664557--18664596 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
18664547 ACTAAGTCAA
*
18664557 ACCGTTGACCGA-CGTTGACC
1 ACCGTTAACCGACCGTTGACC
18664577 ACCGTTAACCGACCGTTGAC
1 ACCGTTAACCGACCGTTGAC
18664597 TTTAACTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.20
Consensus pattern (21 bp):
ACCGTTAACCGACCGTTGACC
Found at i:18664612 original size:20 final size:20
Alignment explanation
Indices: 18664587--18664639 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
18664577 ACCGTTAACC
18664587 GACCGTTGACTTT-AACTGTT
1 GACCGTTGACTTTGAACT-TT
*
18664607 GACCGTTGACTTTGACCTTT
1 GACCGTTGACTTTGAACTTT
18664627 GACCGTTGACTTT
1 GACCGTTGACTTT
18664640 TTTTCGAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.40
Consensus pattern (20 bp):
GACCGTTGACTTTGAACTTT
Found at i:18664639 original size:13 final size:14
Alignment explanation
Indices: 18664587--18664636 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 14
18664577 ACCGTTAACC
18664587 GACCGTTGA-CTTT
1 GACCGTTGACCTTT
* * *
18664600 AACTGTTGACCGTT
1 GACCGTTGACCTTT
*
18664614 GA-CTTTGACCTTT
1 GACCGTTGACCTTT
18664627 GACCGTTGAC
1 GACCGTTGAC
18664637 TTTTTTTCGA
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
13 17 0.63
14 10 0.37
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (14 bp):
GACCGTTGACCTTT
Found at i:18666417 original size:33 final size:33
Alignment explanation
Indices: 18666375--18666472 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
18666365 TCAACATAAG
18666375 TGATTGGAACGA-CTATCAGGGCAGCTTCATCAA
1 TGATTGGAAC-ATCTATCAGGGCAGCTTCATCAA
*
18666408 TGATTGGAACATCTATCAGGGTAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* * *
18666441 TGATTTGAACATCTCTCGGGGCAGCTTCATCA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCA
18666473 TTCTGTTTGC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 1 0.02
33 58 0.98
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAA
Found at i:18669849 original size:19 final size:19
Alignment explanation
Indices: 18669827--18669871 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
18669817 GAAAATATTG
*
18669827 TAAAAATTTATTAAAAT-CA
1 TAAAAAATTA-TAAAATGCA
18669846 TAAAAAATTATAAAATGCA
1 TAAAAAATTATAAAATGCA
18669865 TAAAAAA
1 TAAAAAA
18669872 GACCCTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAAATTATAAAATGCA
Found at i:18670905 original size:15 final size:16
Alignment explanation
Indices: 18670877--18670906 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18670867 TAGAACATTT
18670877 AGAATTATATTTAATA
1 AGAATTATATTTAATA
18670893 AGAATTA-ATTTAAT
1 AGAATTATATTTAAT
18670907 TTTAACTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
AGAATTATATTTAATA
Done.