Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 61 of 125
Found at i:18679706 original size:15 final size:16
Alignment explanation
Indices: 18679677--18679706 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18679667 TTAGAACATT
18679677 TAGAATTATATTTAAA
1 TAGAATTATATTTAAA
18679693 TAGAATTA-ATTTAA
1 TAGAATTATATTTAA
18679707 TTTTAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
TAGAATTATATTTAAA
Found at i:18684250 original size:208 final size:212
Alignment explanation
Indices: 18683760--18684309 Score: 679
Period size: 216 Copynumber: 2.6 Consensus size: 212
18683750 TTGGCTCAAA
* * * *
18683760 GTAAATCAA-TTTTTAATTTAAAGACCAAAAGTTGTTTACAAATTGACAAACTATTTAGACCAAA
1 GTAAAT-AAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGA-CAAA
* * * * ** *
18683824 A-GATGCGATTTCCTGAGCCTGGAATGTTCGAAAAATTATTTGAAGGAATGAATTGTTTTGAATA
64 ATGATGCGATTTCC-GAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATA
* * *
18683888 CTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTTGGACAAGA
128 CTATAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAGAAAGTTT-G-CAAG-
*
18683953 ACCAAGAGAGAAATGATTCTCAC
190 ACCAAGAGAGAAACGATTCTCAC
*
18683976 GTAAATAAGTTTTTAATTCAAAGAGTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
1 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
* * * * * *
18684041 GATGCGATTTCTCGAGAATGGAATG-TCAGGAATATTGCTCGAATGAATGGATCATGTTGAATAC
66 GATGCGATTTC-CGAGCATGGAATGTTC-GAAAAATTACTCGAAGGAATGGATCATCTTGAATAC
* * *
18684105 TATAGGGAA-TCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTTAG-AAG-TT-C-TG-C
129 TATAAGGAACT-AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTAGAAAGTTTGCAAGAC
*
18684164 CAAGA-AGAAACGATTCTCAT
192 CAAGAGAGAAACGATTCTCAC
*
18684184 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACGATTTAGACAAAAT
1 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
*
18684249 GATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAA
66 GATGCGATTT-CCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAA
18684310 AATTTTAAGT
Statistics
Matches: 292, Mismatches: 34, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
208 125 0.43
209 9 0.03
211 1 0.00
212 1 0.00
215 12 0.04
216 140 0.48
217 4 0.01
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (212 bp):
GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
GATGCGATTTCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACTA
TAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAGAAAGTTTGCAAGACCAAG
AGAGAAACGATTCTCAC
Found at i:18684335 original size:208 final size:213
Alignment explanation
Indices: 18683760--18684342 Score: 698
Period size: 208 Copynumber: 2.7 Consensus size: 213
18683750 TTGGCTCAAA
* * * *
18683760 GTAAATCAA-TTTTTAATTTAAAGACCAAAAGTTGTTTACAAATTGACAAACTATTTAGACCAAA
1 GTAAAT-AAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGA-CAAA
* * * * * ** *
18683824 A-GATGCGATTTCCTGAGCCTGGAATGTTCGAAAAATTATTTGAAGGAATGAATTGTTTTGAATA
64 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATA
* * *
18683888 CTTTAAGGAACTAAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTTGGACAAGA
129 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAGAAAGTTT-G-CAAG-
*
18683953 ACCAAGAGAGAAATGATTCTCAC
191 ACCAAGAGAGAAACGATTCTCAC
*
18683976 GTAAATAAGTTTTTAATTCAAAGAGTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
1 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
* * * * * * *
18684041 GATGCGATTTCTCGAGAATGGAATG-TCAGGAATATTGCTCGAATGAATGGATCATGTTGAATAC
66 GATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTACTCGAAGGAATGGATCATCTTGAATAC
* * * * *
18684105 TATAGGGAATCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTTAG-AAG-TT-C-TG-CC
130 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTAGAAAGTTTGCAAGACC
*
18684165 AAGA-AGAAACGATTCTCAT
194 AAGAGAGAAACGATTCTCAC
*
18684184 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACGATTTAGACAAAAT
1 GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
* * *
18684249 GATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAAAATT
66 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACT
* ** *
18684314 TTAAGTAACCAAAAATATAAAAGATCTCG
131 TTAAGGAACCAAAGTTATAAAAGAACTCG
18684343 GGCATAATTA
Statistics
Matches: 314, Mismatches: 48, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
208 150 0.48
209 8 0.03
211 1 0.00
212 1 0.00
215 11 0.04
216 140 0.45
217 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (213 bp):
GTAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACT
TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTAGAAAGTTTGCAAGACCAA
GAGAGAAACGATTCTCAC
Found at i:18691343 original size:216 final size:215
Alignment explanation
Indices: 18690938--18691698 Score: 809
Period size: 216 Copynumber: 3.5 Consensus size: 215
18690928 ACTCATATCA
* *
18690938 GAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAATTGACAAAC
1 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * * *
18691003 TATTTAGACCAAAAGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAAGAATGGA
66 TATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAAGAATGGA
* * * * * *
18691068 TCGT-CTCGAATGCTTTAGGGAACCT-AAGTTTTGAACGAACTTGTAAAACTTTAACAAGTTCTT
131 TCGTCCT-GAATGCTTTAAGGAA-CTGAAGTTATAAAAGAACTCGTAAAATTTTAACAAGTTCTT
** *
18691131 AAGTTCATCCAAGAGCCAATAAG
194 AAGTTCGGCCAAGAACCAA-AAG
*
18691154 GAAACAATTATCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
1 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * * * *
18691219 TATTTTGGCCAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTTGAATGATTGGG
66 TATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAAGAATGGA
* * * **
18691284 TCTTCCTAAATGCTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAATTTTTACAAGTTCGGAA
131 TCGTCCTGAATGCTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAATTTTAACAAGTTCTTAA
* *
18691349 GTTCGGCCAAGAACGAAGAG
196 GTTCGGCCAAGAACCAAAAG
* * * *
18691369 AGAAACAATTCTCACGTAAATAAGTTTTTAATT-TATGAACAAAAAAGTTGTTTAAAAAATGACA
1 -GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-AC-CAAAAGTTGTTTACAAAATGACA
* * * **
18691433 AACTATTTAGACCAAATGATATGATTTCCCAAGAATGGAATGTTCGGGAAATTTCTC-AAAGGAA
63 AACTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAA-GAA
* * ** * * * *
18691497 TGAATCGTCTTGAATAATTTTAGG-ATTCGGAGTTATAAAAGAACTCGTAAAATTTTGACAAGTT
127 TGGATCGTCCTGAATGCTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAATTTTAACAAGTT
*
18691561 -TGGT-AGTTCGGCCAAGAACCAGGAGAGAAA
191 CT--TAAGTTCGGCCAAGAACC---A-A-AAG
* ** *
18691591 CAAACAATTCTCACGTAAATATA-TTTTTAATTCAAAGACCAAAAACTATTTACAAAATGACAAA
1 GAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * * *
18691655 TTATTTAGACCAAATGATGCAATTTCTCGACCATGGAATGTTCG
65 CTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTCG
18691699 GTGATGTAGT
Statistics
Matches: 452, Mismatches: 77, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
215 6 0.01
216 214 0.47
217 139 0.31
220 57 0.13
221 32 0.07
222 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
TATTTAGACCAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAAGAATGGA
TCGTCCTGAATGCTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAATTTTAACAAGTTCTTAA
GTTCGGCCAAGAACCAAAAG
Found at i:18692602 original size:25 final size:24
Alignment explanation
Indices: 18692574--18692626 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
18692564 TCTCTAGTTG
18692574 AATTCA-AATTAAATTCTAAAAAGAT
1 AATTCAGAATTAAA-TCTAAAAA-AT
*
18692599 AATT-AGAATTAAATCTAAACAAT
1 AATTCAGAATTAAATCTAAAAAAT
18692622 AATTC
1 AATTC
18692627 CCTAATTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 6 0.24
24 8 0.32
25 11 0.44
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
AATTCAGAATTAAATCTAAAAAAT
Found at i:18693539 original size:19 final size:19
Alignment explanation
Indices: 18693517--18693553 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18693507 CTCAAACACA
18693517 TTTTTATCTTTTTCTTCTT
1 TTTTTATCTTTTTCTTCTT
* *
18693536 TTTTTCTCTTTTTTTTCT
1 TTTTTATCTTTTTCTTCT
18693554 CAATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTATCTTTTTCTTCTT
Found at i:18693567 original size:11 final size:12
Alignment explanation
Indices: 18693534--18693580 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
18693524 CTTTTTCTTC
*
18693534 TTTTTTTCTC-T
1 TTTTTTTCTCAA
18693545 TTTTTTTCTCAA
1 TTTTTTTCTCAA
18693557 TTTTTTTTCAATCAA
1 -TTTTTTTC--TCAA
18693572 TTTTTTTCT
1 TTTTTTTCT
18693581 TTTCGACTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 10 0.32
12 1 0.03
13 8 0.26
14 8 0.26
15 4 0.13
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTTTCTCAA
Found at i:18693579 original size:14 final size:13
Alignment explanation
Indices: 18693534--18693578 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 13
18693524 CTTTTTCTTC
18693534 TTTTTTTCTC--T
1 TTTTTTTCTCAAT
18693545 TTTTTTTCTCAAT
1 TTTTTTTCTCAAT
18693558 TTTTTTTCAATCAAT
1 TTTTTTTC--TCAAT
18693573 TTTTTT
1 TTTTTT
18693579 CTTTTCGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.33
13 9 0.30
15 11 0.37
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTTTCTCAAT
Found at i:18694546 original size:7 final size:7
Alignment explanation
Indices: 18694516--18694686 Score: 204
Period size: 7 Copynumber: 25.4 Consensus size: 7
18694506 AGTGCATAAT
18694516 AAAATG-
1 AAAATGA
18694522 AAAATG-
1 AAAATGA
18694528 AAAATG-
1 AAAATGA
18694534 AAAATGA
1 AAAATGA
18694541 AAAATGA
1 AAAATGA
18694548 AAAATG-
1 AAAATGA
18694554 AAAATGA
1 AAAATGA
18694561 AAAATGA
1 AAAATGA
18694568 AAAA-GA
1 AAAATGA
18694574 AAAA-GA
1 AAAATGA
18694580 AAAA-GA
1 AAAATGA
18694586 AAAA-G-
1 AAAATGA
18694591 AAAATG-
1 AAAATGA
18694597 AAAATGA
1 AAAATGA
18694604 AAAA-G-
1 AAAATGA
18694609 AAAATGA
1 AAAATGA
18694616 AAAATGA
1 AAAATGA
18694623 AAAATGA
1 AAAATGA
18694630 AAAATGA
1 AAAATGA
18694637 AAAATGA
1 AAAATGA
18694644 CAAAATGAA
1 -AAAATG-A
18694653 AAAATGAAA
1 AAAATG--A
18694662 AAAATGA
1 AAAATGA
*
18694669 AAAATAAA
1 AAAAT-GA
18694677 AAAATGA
1 AAAATGA
18694684 AAA
1 AAA
18694687 TAAAAATAAA
Statistics
Matches: 153, Mismatches: 2, Indels: 19
0.88 0.01 0.11
Matches are distributed among these distances:
5 8 0.05
6 52 0.34
7 66 0.43
8 18 0.12
9 9 0.06
ACGTcount: A:0.74, C:0.01, G:0.14, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:18694664 original size:75 final size:69
Alignment explanation
Indices: 18694521--18694671 Score: 218
Period size: 69 Copynumber: 2.2 Consensus size: 69
18694511 ATAATAAAAT
*
18694521 GAAAATGAAAATGAAAATGAAAAATGAAAAATGAAAATGAAAAATGAAAAAGAAAAAGAAAAAGA
1 GAAAATGAAAATGAAAAAGAAAAATGAAAAATGAAAATGAAAAATGAAAAAGAAAAAGAAAAAGA
18694586 AAAA
66 AAAA
18694590 GAAAATGAAAATGAAAAAG-AAAATGAAAAATGAAAAATGAAAAATGAAAAATGACAAAATGAAA
1 GAAAATGAAAATGAAAAAGAAAAATGAAAAATG-AAAATGAAAAATGAAAAA-GA-AAAA-GAAA
*
18694654 AA-ATGAAA
62 AAGA-AAAA
18694662 -AAAATGAAAA
1 GAAAATGAAAA
18694672 ATAAAAAAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
68 13 0.17
69 36 0.48
70 2 0.03
71 15 0.20
72 9 0.12
ACGTcount: A:0.73, C:0.01, G:0.15, T:0.11
Consensus pattern (69 bp):
GAAAATGAAAATGAAAAAGAAAAATGAAAAATGAAAATGAAAAATGAAAAAGAAAAAGAAAAAGA
AAAA
Found at i:18694671 original size:6 final size:6
Alignment explanation
Indices: 18694516--18694654 Score: 152
Period size: 6 Copynumber: 21.7 Consensus size: 6
18694506 AGTGCATAAT
18694516 AAAATG AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAATG AAAAATG
1 AAAATG AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAATG -AAAATG
* * * * *
18694567 AAAAAG AAAAAG AAAAAG AAAAAG AAAATG AAAATG AAAAAG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
18694615 AAAAATG AAAAATG AAAAATG AAAAATG ACAAAATG AAAA
1 -AAAATG -AAAATG -AAAATG -AAAATG --AAAATG AAAA
18694655 AATGAAAAAA
Statistics
Matches: 124, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
6 72 0.58
7 46 0.37
8 6 0.05
ACGTcount: A:0.73, C:0.01, G:0.15, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:18694691 original size:12 final size:12
Alignment explanation
Indices: 18694516--18694693 Score: 116
Period size: 12 Copynumber: 13.9 Consensus size: 12
18694506 AGTGCATAAT
*
18694516 AAAATGAAAATG
1 AAAATAAAAATG
*
18694528 AAAATGAAAATG
1 AAAATAAAAATG
18694540 AAAAATGAAAAATG
1 -AAAAT-AAAAATG
18694554 AAAATGAAAAATG
1 AAAAT-AAAAATG
*
18694567 AAAA-AGAAAAAG
1 AAAATA-AAAATG
*
18694579 AAAA-AGAAAAAG
1 AAAATA-AAAATG
*
18694591 AAAATGAAAATG
1 AAAATAAAAATG
18694603 AAAA-AGAAAATG
1 AAAATA-AAAATG
18694615 AAAAATGAAAAATG
1 -AAAAT-AAAAATG
18694629 AAAAATGAAAAATG
1 -AAAAT-AAAAATG
18694643 ACAAAATGAAAAAATG
1 --AAAAT--AAAAATG
18694659 --AA-AAAAATG
1 AAAATAAAAATG
18694668 AAAAATAAAAAAATG
1 -AAAAT--AAAAATG
18694683 AAAATAAAAAT
1 AAAATAAAAAT
18694694 AAATGTACTA
Statistics
Matches: 143, Mismatches: 7, Indels: 32
0.79 0.04 0.18
Matches are distributed among these distances:
9 7 0.05
11 1 0.01
12 58 0.41
13 26 0.18
14 31 0.22
15 13 0.09
16 7 0.05
ACGTcount: A:0.74, C:0.01, G:0.13, T:0.12
Consensus pattern (12 bp):
AAAATAAAAATG
Found at i:18694697 original size:24 final size:23
Alignment explanation
Indices: 18694615--18694686 Score: 51
Period size: 25 Copynumber: 3.1 Consensus size: 23
18694605 AAAGAAAATG
* *
18694615 AAAAATG-AAAAATGAAAAAT-G
1 AAAAATGAAAAAAAGAAAAATAA
* *
18694636 AAAAATGACAAAATGAAAAAATGAA
1 AAAAATGAAAAAAAG-AAAAAT-AA
*
18694661 AAAAATGAAAAATAA-AAAAATGA
1 AAAAATGAAAAA-AAGAAAAATAA
18694684 AAA
1 AAA
18694687 TAAAAATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 7 0.17
22 6 0.15
23 10 0.24
24 6 0.15
25 11 0.27
26 1 0.02
ACGTcount: A:0.75, C:0.01, G:0.11, T:0.12
Consensus pattern (23 bp):
AAAAATGAAAAAAAGAAAAATAA
Found at i:18707528 original size:303 final size:303
Alignment explanation
Indices: 18706981--18707888 Score: 1537
Period size: 303 Copynumber: 3.0 Consensus size: 303
18706971 ACCAGAGTAG
*
18706981 GAGTCAACAAAAGGCGCAAATTCATACTTACTTTTTTCTCTAGTTGGATATTGAATTGGACATCG
1 GAGTCAACAAAAGGCGCAAATTCATACTTACTTTCTTCTCTAGTTGGATATTGAATTGGACATCG
* *
18707046 AAAACTCTCATGATCTTCTAAACTACACCAATAACATTTCACAAAAGGTGATAGCTCAATTGTCT
66 AAAACTCTCATGATCTTCTAAACTACACCAATAACATTACACAAAAGGTGATAGCTCAATTGTAT
* *
18707111 TCCTCCTTTTGTTTGGCCAACTCCCCTTAGATTGACAAACTAATTTATGATTAACTTTTCCATCA
131 TCCTCCTTTCGTTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTAACTTTTCCATCA
*
18707176 CAATATGTCTCTTGACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATTTAGCTAAAAA
196 CAATAAGTCTCTTGACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATTTAGCTAAAAA
* * * *
18707241 TGTTACCGACAACTAGTAGTAACCAAAGGATCATCATCCATAA
261 TATTGCCCACAACCAGTAGTAACCAAAGGATCATCATCCATAA
18707284 GAGTCAACAAAAGGCGCAAATTCATACTTACTTTCTTCTCTAGTTGGATATTGAATTGGACATCG
1 GAGTCAACAAAAGGCGCAAATTCATACTTACTTTCTTCTCTAGTTGGATATTGAATTGGACATCG
* * *
18707349 AAAACTCTAATGATCTTCTAAACTACACCAATAACATTACACAAAAGCTGCTAGCTCAATTGTAT
66 AAAACTCTCATGATCTTCTAAACTACACCAATAACATTACACAAAAGGTGATAGCTCAATTGTAT
* *
18707414 TCGTCCTTTCGTTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTAACTTTTCCATTA
131 TCCTCCTTTCGTTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTAACTTTTCCATCA
*
18707479 CAATAAGTCTCTTGACCATTCCTTCCATGAAATTCTGGAAATGAAAACTTTGATTTAGCTAAAAA
196 CAATAAGTCTCTTGACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATTTAGCTAAAAA
* * *
18707544 AATTGCCTAAAACCAGTAGTAACCAAAGGATCATCATCCATAA
261 TATTGCCCACAACCAGTAGTAACCAAAGGATCATCATCCATAA
* * * *
18707587 CAGTCAACAAAAGGTGCAAATTCATACTTACTTTCTTCTTTAGTTTGATATTGAATTGGACATCG
1 GAGTCAACAAAAGGCGCAAATTCATACTTACTTTCTTCTCTAGTTGGATATTGAATTGGACATCG
* * *
18707652 AAAATTCTCATGATCTTCTGAACTACACCAATAACATTACACGAAAGGTGATAGCTCAATTGTAT
66 AAAACTCTCATGATCTTCTAAACTACACCAATAACATTACACAAAAGGTGATAGCTCAATTGTAT
* *
18707717 TCCTCCTTTCATTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTATCTTTTCCATCA
131 TCCTCCTTTCGTTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTAACTTTTCCATCA
* *
18707782 CAATAAGTCTCTTAACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATATAGCTAAAAA
196 CAATAAGTCTCTTGACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATTTAGCTAAAAA
*
18707847 TATTGCCCACAACCACTAGTAACCAAAGGATCATCATCCATA
261 TATTGCCCACAACCAGTAGTAACCAAAGGATCATCATCCATA
18707889 CGAGGGACAC
Statistics
Matches: 566, Mismatches: 39, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
303 566 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (303 bp):
GAGTCAACAAAAGGCGCAAATTCATACTTACTTTCTTCTCTAGTTGGATATTGAATTGGACATCG
AAAACTCTCATGATCTTCTAAACTACACCAATAACATTACACAAAAGGTGATAGCTCAATTGTAT
TCCTCCTTTCGTTTGGCCAACTCCCCTTGGATTGACAAACTAATTTATGATTAACTTTTCCATCA
CAATAAGTCTCTTGACCATTCCTTCCATGAAATTCTGGAATTGAAAACTTTGATTTAGCTAAAAA
TATTGCCCACAACCAGTAGTAACCAAAGGATCATCATCCATAA
Found at i:18708732 original size:11 final size:12
Alignment explanation
Indices: 18708715--18708739 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18708705 TGTTTTCTCT
18708715 ACTTTTTTTATC
1 ACTTTTTTTATC
18708727 ACTTTTTTTATC
1 ACTTTTTTTATC
18708739 A
1 A
18708740 GAAATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (12 bp):
ACTTTTTTTATC
Found at i:18710928 original size:216 final size:215
Alignment explanation
Indices: 18710451--18711199 Score: 892
Period size: 217 Copynumber: 3.5 Consensus size: 215
18710441 TCATATCAGT
* * *
18710451 AACAATTCTCATGA-AAATAAGTTTTTAATT-TTAAAACCAAAAGTTATTTACAAATTGACAAAC
1 AACAATTCTCA-CATAAATAAGTTTTTAATTCAT-AAACCAAAAGTTATTTACAAAATGACAAAC
* * *
18710514 TATTTAGACCAAAAGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCCCGAAGGAATGGA
64 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAGGAATGGA
* * * * * * * **
18710579 TCGTCTTGAAAGCTTT---AACCGAAGTTTTGAAATAACTCATTAAACTTTGACAAGTTCTTAAG
129 TCGTCTTGAATGCTTTAGGAATCGAAGTTATAAAAGAACTCATAAAATTTTGACAAGTTCGAAAG
*
18710641 TTC-GTCCAAGAGA-CAATAGAGA
194 TTCAG-CCAAGA-ACCAAGAGAGA
* * * * *
18710663 AACAATTATCACCTAAATAAATTTTTAATTCA-AGGACCAAAAGTTGTTTACAAAATGACAAACT
1 AACAATTCTCACATAAATAAGTTTTTAATTCATA-AACCAAAAGTTATTTACAAAATGACAAACT
* * *
18710727 ATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAA-TAATTGGG
65 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAGGAA-TGGA
*
18710791 TTGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAATTTTGACAAGTTCGAAA
129 TCGTCTTGAATGCTTT-AGGAATCGAAGTTATAAAAGAACTCATAAAATTTTGACAAGTTCGAAA
*
18710856 GTTCAGCCAAGAACCAGGAGAGA
193 GTTCAGCCAAGAACCAAGAGAGA
* * *
18710879 AACAATTCTCACATAAATAAGTTTTTAATTCATGAACCAAAAGTTGTTTAGAAAAATGACAAACT
1 AACAATTCTCACATAAATAAGTTTTTAATTCATAAACCAAAAGTTATTTA-CAAAATGACAAACT
* ** * *
18710944 ATTTAGACCAAATTATATGATTTCCCCAGCATGGAATGTTCGAGAAAA-TTCTCAAAGGAATGGA
65 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTTCTCGAAGGAATGGA
* ** * * * *
18711008 TCATCTTGAATAATTTTAGGATTCGGAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCGGAA
129 TCGTCTTGAAT-GCTTTAGGAATCGAAGTTATAAAAGAACTCATAAAATTTTGACAAGTTCGAAA
*
18711073 GTTCAACCAAGAACCAAGAGAGA
193 GTTCAGCCAAGAACCAAGAGAGA
* *
18711096 AACAATTCTCACGTAAATATA-TTTTTAATTCA-AAGACCAAAAGCTATTTACAAAATGACAAAC
1 AACAATTCTCACATAAATA-AGTTTTTAATTCATAA-ACCAAAAGTTATTTACAAAATGACAAAC
* *
18711159 TATTTAGACCAAATGATGCGATTTCCCAACCATGGAATGTT
64 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
18711200 TGGTGATGCA
Statistics
Matches: 460, Mismatches: 60, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
211 3 0.01
212 121 0.26
215 1 0.00
216 147 0.32
217 178 0.39
218 10 0.02
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (215 bp):
AACAATTCTCACATAAATAAGTTTTTAATTCATAAACCAAAAGTTATTTACAAAATGACAAACTA
TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAGGAATGGATC
GTCTTGAATGCTTTAGGAATCGAAGTTATAAAAGAACTCATAAAATTTTGACAAGTTCGAAAGTT
CAGCCAAGAACCAAGAGAGA
Found at i:18714239 original size:6 final size:6
Alignment explanation
Indices: 18714220--18714317 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
18714210 AGTGCATAAT
* *
18714220 AAAATA AAATTA AAAAT- AAAAT- -AAATG AAAATGA AAAATGA AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAAT-A AAAATA
* * *
18714266 GAAA-A AAAATGA AAAATAA AAAATGA AAAATG AAAATG AAAATA AAAATA
1 AAAATA AAAAT-A AAAAT-A AAAAT-A AAAATA AAAATA AAAATA AAAATA
18714316 AA
1 AA
18714318 TGTACTAATT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
4 4 0.05
5 11 0.14
6 32 0.42
7 30 0.39
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:18714259 original size:7 final size:7
Alignment explanation
Indices: 18714242--18714307 Score: 82
Period size: 7 Copynumber: 9.3 Consensus size: 7
18714232 AAAATAAAAT
18714242 AAATG-A
1 AAATGAA
18714248 AAATGAA
1 AAATGAA
18714255 AAATGAA
1 AAATGAA
18714262 AAATGAAAAA
1 AAATG---AA
18714272 AAATGAA
1 AAATGAA
*
18714279 AAATAAA
1 AAATGAA
18714286 AAATGAA
1 AAATGAA
18714293 AAATG-A
1 AAATGAA
18714299 AAATGAA
1 AAATGAA
18714306 AA
1 AA
18714308 TAAAAATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
6 11 0.21
7 35 0.66
10 7 0.13
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (7 bp):
AAATGAA
Found at i:18714274 original size:24 final size:24
Alignment explanation
Indices: 18714247--18714313 Score: 91
Period size: 24 Copynumber: 2.7 Consensus size: 24
18714237 AAAATAAATG
*
18714247 AAAATGAAAAATGAAAAATGAAAA
1 AAAATGAAAAATAAAAAATGAAAA
18714271 AAAATGAAAAATAAAAAATGAAAAA
1 AAAATGAAAAATAAAAAATG-AAAA
18714296 TGAAAATG-AAAATAAAAA
1 --AAAATGAAAAATAAAAA
18714314 TAAATGTACT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 19 0.49
25 4 0.10
26 10 0.26
27 6 0.15
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.13
Consensus pattern (24 bp):
AAAATGAAAAATAAAAAATGAAAA
Found at i:18714288 original size:31 final size:31
Alignment explanation
Indices: 18714225--18714317 Score: 120
Period size: 31 Copynumber: 3.0 Consensus size: 31
18714215 ATAATAAAAT
* * *
18714225 AAAATTAAAAAT-AAAATAAATG-AAAATGA
1 AAAATGAAAAATGAAAAAAAATGAAAAATAA
18714254 AAAATGAAAAATGAAAAAAAATGAAAAATAA
1 AAAATGAAAAATGAAAAAAAATGAAAAATAA
18714285 AAAATGAAAAATGAAAATGAAAAT-AAAAATAA
1 AAAATGAAAAATGAAAA--AAAATGAAAAATAA
18714317 A
1 A
18714318 TGTACTAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
29 11 0.19
30 9 0.16
31 23 0.40
32 9 0.16
33 5 0.09
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (31 bp):
AAAATGAAAAATGAAAAAAAATGAAAAATAA
Found at i:18717188 original size:6 final size:6
Alignment explanation
Indices: 18717167--18717214 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
18717157 TAAATGGGAA
* * *
18717167 AAAAAT AAAATGT AAAAAT AAAATT AAAAAT GAAAAT AAAAAT AAAAA
1 AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
18717215 ATGGCTAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:18717194 original size:12 final size:12
Alignment explanation
Indices: 18717167--18717213 Score: 69
Period size: 13 Copynumber: 3.8 Consensus size: 12
18717157 TAAATGGGAA
18717167 AAAAATAAAATGT
1 AAAAATAAAAT-T
18717180 AAAAATAAAATT
1 AAAAATAAAATT
18717192 AAAAATGAAAA-T
1 AAAAAT-AAAATT
18717204 AAAAATAAAA
1 AAAAATAAAA
18717214 AATGGCTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 4 0.12
12 14 0.42
13 15 0.45
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:18718325 original size:23 final size:24
Alignment explanation
Indices: 18718283--18718327 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
18718273 GTTGGATCCA
18718283 AATTAAATTCTAAAAGATAATTAG
1 AATTAAATTCTAAAAGATAATTAG
18718307 AATTAAA-TCTAAACA-ATAATT
1 AATTAAATTCTAAA-AGATAATT
18718328 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (24 bp):
AATTAAATTCTAAAAGATAATTAG
Found at i:18719010 original size:216 final size:215
Alignment explanation
Indices: 18718619--18726012 Score: 6036
Period size: 216 Copynumber: 34.7 Consensus size: 215
18718609 TTATCATTCA
* * * * * * *
18718619 AAAATTTCACGAAGGAATGGATCGTCTTGAATACTTTATGGAACAGAAGTTATGAAAGAAATCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
*** *
18718684 AAAAGTTTGACAAGCTT-GGTTGTTTGG-CAAGGAACCAAGAGAGAAACAATTCTCACGTAAATA
66 AAAAGTTTGACAAG-TTCGAAAGTTCGGACAA-GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * ** *
18718747 AGTTTTTAATACAAAGACCAAAATTTGTTTACAAATTGATGAAGTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* ** *
18718812 TTTCCCGAGCCTAAAATATTCAG
194 TTTCCCGAGCATGGAATGTTC-G
* * * ** *
18718835 AAAATTGTTTGAAGGAATGGAGCATCTTGAATAAATTAAGGAACTGAAATTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * ** ** *
18718900 AAAAGTTTGAAAAGTTCGAAACTTCTGATAAGAACCAAGAGAGAAATGATTCTCACAAAAATAAC
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
18718965 TTTTTAATTCAAAGGCTAAAAGTTGTTTATAAAATGACAAAGTATTTAGACAAAATGCTACGATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*
18719030 TCCCAAGCATGGAATGTTCG
196 TCCCGAGCATGGAATGTTCG
** * * * *
18719050 AAAAATTGCTCGAAGGAATCAAT-AGTCTTGAATACTTTAAGGAACCGAAGTTTTGAAAGAACTT
1 -AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* ** * * * * ** *
18719114 ATAAAAGTTTGACAAGTTCGAAAG-TCAGTCCGAGAGCCAAGGGAGAAACAATTCTCTCACAAAA
64 GTAAAAGTTTGACAAGTTCGAAAGTTC-GGACAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * **
18719178 AAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACATACTATTTAAACCAAATGATTTG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
18719243 ATTTCCCGATCATGGAATGTTGGG
193 ATTTCCCGAGCATGGAATGTT-CG
* * * * * * * *
18719267 AATATTGCTCGAATGAATGGGTCATCTTGAATACTTTAGGGAATTGAAGTTATAAAAGGAGTCTT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * *
18719332 AAAATTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGAAAATAAG
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
18719397 TTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGATAAACTATTTAGATCAAATGATGCGATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
**
18719462 TTTCGAGCATGGAATGTTCG
196 TCCCGAGCATGGAATGTTCG
* * **
18719482 AAAATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATCAC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
** * * *
18719547 AAAAGTTTGACAAGTTCGGTAGTTCAGA-AGGGAACCAAGAGAGAAACAATTCACACGTAAATAA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
18719611 GGTTTT-ATGTCAAAGACCAAAA-TTTTTTAC-AAATTAAAGAACTATTTAGACCAAAAGATGTG
130 GTTTTTAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCG
* * *
18719673 ATTTCTCGAGCTTGAAATGTTCG
193 ATTTCCCGAGCATGGAATGTTCG
** * * * *
18719696 AAAAATTATTCGAAGGAATGGATCGTTTTGATTACTTTAAGGAACCGAAGTTATAAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * **
18719761 TAAAAATTTGACAAGTCCGAAAGTTCGGACAAGAACCAAGAGGGAAATGATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * **
18719826 -TTTTTAATTGAAAGACTAAAACTTGTTTATAAAATGACAAACTATTTAGAAAAAATGATGCGA-
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* *
18719889 CTCTCCGAGCATGGAATGTTCAA
195 TTC-CCGAGCATGGAATGTTC-G
* ** * * * ** *
18719912 AAAATTGCTCCAAGGAATGGATCGCCTTGAAAACTTTGAGGAACCGAAAATATAAAAGAACTCAT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * * * *
18719977 AAAAGATTGAAAAGTTTGGAAGTTCAGACAA-AAACATAGAGAGAAACAATTCTCACATAAATAA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAA
* * * *
18720041 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGGCAAACTATTTAGACCAAAAGATTCAAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
18720106 TTCTCGAGCATAGACTGTTCG
195 TTCCCGAGCATGGAATGTTCG
* * * * * *
18720127 AAAAATTGCTC---GG-A-GGA--A----GAATGCTTTAAGGAACCGAAGTTTTGAAATAACTAG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
*** * *
18720181 TAAAAGTTTGACAAGTTCGAAAGTTCATCCAAG--CCAAGAGTGAAAAAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
18720244 GTTTTTAGTTCAAAGACTAAATA-TTGTTTACAAAATGACCAACTACTTT-GACCAAATGATGCG
130 GTTTTTAATTCAAAGACCAAA-AGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCG
* *
18720307 ATTTCTCGAGCATGGAATGATTGG
193 ATTTCCCGAGCATGGAATG-TTCG
* * * * * * *
18720331 AAGATTGCTCGAATGAATGGAACGTC-TGTAATACTTTAAAGAACAGAAGTTATAAAAGAAATCG
1 AAAATTGCTCGAAGGAATGGATCATCTTG-AATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
** *
18720395 TAAAAAGTTTGACAAGTTCGGTAGTTC-GACAAGGAACCAAGAGAGAAACAATTCTCATGTAAAT
65 T-AAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * **
18720459 AAGTTTTTAATTCAAAGAACAAAATTTGTCTACAAATTGACGTACTATTTAGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
18720524 ATTTCCCGAACCTAGAATGTTCG
193 ATTTCCCGAGCATGGAATGTTCG
* * * * * * *
18720547 AAAAATTGTTTGAAGGAATGGATAATGTTGAATACATTAAGGAACCGAAATTATAAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * * *
18720612 TAAAAGTTTGACAAGTTTGATAGTTTGGACTAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
18720677 GTTTTAAATTCAAAGACCAAAAGCTATTTACAAAATGATAAACTATTTCGACAAAATGATACGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
*
18720742 TTCCCGAGCATGGAAAGTTCG
195 TTCCCGAGCATGGAATGTTCG
* * *
18720763 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* ** * * * *
18720828 AAAAGTTTGACAAGTTTGGTAGTTCGGA-AGGGAACCAAGAGAGAAACAATTCACACTTGAATAA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
18720892 GATTTT-ATGTCAAAGACCAAAA-TTTTTTACAAATTGA-AGAACTATTTAGACCAAAAGATGTG
130 GTTTTTAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCG
* * * *
18720954 ATTTCCCTAACTTGAAATGTTCG
193 ATTTCCCGAGCATGGAATGTTCG
** * * * * *
18720977 AAAAATTATTCGATGGAATGGATCGTTTTGATTACTTTAAGGAACTGAAGTTATAAAAGAACTCA
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * **
18721042 TAAAAGTTAGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGGGAAATGATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
18721107 GTTTTTCATTCAAAGACTAAAAGCTATTTATAAAATGACAAACTATTTAGACAAAATGATGCGAC
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
18721172 TTCTCGAGCATGGAGTGTTTG
195 TTCCCGAGCATGGAATGTTCG
* * * *
18721193 AAAAATTGCTCGAAGGAATGGATC-TCTTTAATACTTTAAGGAAC-CAATGTTTTGAAAGAACTC
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA-GTTATAAAAGAACTC
* * * *** ** * *
18721256 ATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAGGCAAGAGAGAAACACTTCCCACGTAAATA
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * *
18721321 TGTTTTTAAGCCAAAGGCCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
18721386 TTTCCCAAGCATGGAATGTTCG
194 TTTCCCGAGCATGGAATGTTCG
* * * * * * *
18721408 AATTATTGCTCGAATGAATGGGTCATCTTGAATACTTTAGGGAATTCAAGTTATAAAAGAAGTCG
1 AA-AATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * *
18721473 TAAAA-TTCTGACAAGTTCGGAAGTTAGGCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATA
65 TAAAAGTT-TGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18721537 AGTTTTTAATTCAAAGACAAAAAGCTATTTAGAAAATGATAAACTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
18721602 TTTCCCGAGCATGGAATGTTCA
194 TTTCCCGAGCATGGAATGTTCG
* * ** * * * *
18721624 AAAATTGCTCAAAGGAATGGATCATTTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATTGC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * *
18721689 AAAAGTTTAACAAGTTCGATAGTTCGGA-AGGGATCCAAGAGAGAAACAATTCACACGTAAATAA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
18721753 GTTTTT-ATGTCAAAGACCAAAAGTTGTTTACAAATTGA-AGAACTATTTAGACCAAAAGATGTG
130 GTTTTTAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCG
* * * *
18721816 ATTTCCTGAGCCTGAAATGTTCAA
193 ATTTCCCGAGCATGGAATGTTC-G
** * *
18721840 AAAATTATTC-AATGGAATGGATCATTTTGATTACTTTAAGGAACTGAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAA-GGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * ** *
18721904 TAAAAGTTTGACAAGTTCAAAAGTTTGGACAAGAACCAAGAGGGAAATGATTCTCATGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
18721969 GTTTTTAATTTAAAGACTAAAAGTTGTTTATAAAATGACAAAATATTTAGACAAAATGATGCGAC
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
18722034 TTCTCGAGCAAGGAATGCTCG
195 TTCCCGAGCATGGAATGTTCG
* * * * * * ** *
18722055 AAAAATTTCTCCAAGGAATGGAGCATCTCGAAAACTTTGAGGAACTGAAAATATAAAAGAACTTG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * * *
18722120 TAAAAGATTAAAAAGTTTGGAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * ** * *
18722185 GTTTTTAATTCAAAGACCAAAAGATTCGATTT-CCAGA-G-CATGGGCTA-TTCGA-AAAAT--T
130 GTTTTTAATTCAAAGACCAAAAG-TT-G-TTTACAAAATGACA--AACTATTTAGACCAAATGAT
* * **
18722243 GC----T--CGAAGGAAGGGGTAG-TCTG
190 GCGATTTCCCG-AGCATGGAAT-GTTC-G
* ** * * * ***
18722265 -GAA-TGCTTTAAGGAATCGA--AGTTTTGAAATAACTCTTAA--AAGTTTGAGAAGTT-CGGAA
1 AAAATTGCTCGAAGGAATGGATCA-TCTTG-AAT-ACT-TTAAGGAA--CT--GAAGTTATAAAA
* ** * * *** * ** * ***** *
18722323 G--TTCGTCTAAG--GGCCAAGAGAGAAATAATTCTCACATA-AA--TA-AG-TTTTTAATTC-A
58 GAACTCGTAAAAGTTTGACAAGTTCG-AA-AGTTCGGACA-AGAACCAAGAGAGAAACAATTCTC
* ** * *
18722378 AAGACTAAAT--GTTGTTT-A--CAAAATGA-CAAACTA-TT-TAGACCAAATGATGC-GA-T-T
120 ACG--TAAATAAGTT-TTTAATTC-AAA-GACCAAA--AGTTGTTTACAAAATGA--CAAACTAT
* * * * * *
18722432 TCTCGAGC--ATG--G-AATGTT--CGA--A-AGATTGCTCG
176 T-TAGACCAAATGATGCGAT-TTCCCGAGCATGGAATGTTCG
* * *** * * * *****
18722464 AATGAA-TG--AGATGCCTTGAAT-ACTTTATGGAATCGAGGTTATAA--AA--GAAACCGCAAA
1 AA--AATTGCTCGAAGGAATGGATCA-TCT-T-GAAT--A-CTT-TAAGGAACTGAAGTTATAAA
* * * * ** *
18722521 AG--TTTG-ACAAGTTCG-GTAGTTCGACAA----GG-----AACCAAGAGAGAAACTATTCTCA
57 AGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
18722573 CGTAAATAAGTTTTTAATTCAAAGACTAAAAGTTATTTATATAATGACAAACAATTTAGACAAAA
121 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
18722638 TGATGCGATTTCTCGATCGTGGAATGTTCGG
186 TGATGCGATTTCCCGAGCATGGAATGTTC-G
* * * * * *
18722669 AAAATTGCTCGAAGGAATGGATCTTCTTTAATACTTTAAGGAA-TCAAAGTTTTGAAAGAACTCA
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCG
* * * ** *** *
18722733 TAAAAGTTTTACAATTTCGGAAGTTCGTCCAAGAGGTAAGAGAGAAATAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
18722798 GTTTATAA-TCTAAAGATCAAATGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
130 GTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
18722862 TTTCCCGAGCATGGAATGTTTGG
194 TTTCCCGAGCATGGAATG-TTCG
* * * * * * *
18722885 AATATTGCTCGAATGAATGGGTCATCTTGAATAGTTTAGGGAATTGAAGTTATAAAAGAAGTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * *
18722950 AAAATTTTAACAAGTTCGAAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * **
18723015 -TTTTAATTCAAAGACCAAAAGCTATTTACAAAATTATAAACTATTTAGGCCAAATGATATGATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*
18723079 TGCCGAGCATGGAATGTTCG
196 TCCCGAGCATGGAATGTTCG
* * * **
18723099 GAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATCAC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
*** * *
18723164 AAAAGTTTGACAAGTTCGGTTG-TCCGA-AAGGGAACCAAGAGAGAAACAATTCACACGTAAATA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAA--GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18723227 AG-TTTT-ATATCAAAGACCAAAAGTTGTTTACAAATTTA-AGAACTATTTAGACCAAAAGAAGT
129 AGTTTTTAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGC
** * *
18723289 GATTTCCAAAG-ACTGAAATGTTTG
192 GATTTCCCGAGCA-TGGAATGTTCG
** * * * * * *
18723313 AAAAATTATTCGAAGGAATGGATC-GCTTTGATTTCTTTAAGGAACCGAAGTCATAAAAAAACTC
1 -AAAATTGCTCGAAGGAATGGATCATC-TTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * * **
18723377 GTAAAAGTTTGACAAGTTCGAAAGTTCGGAAAATAACCAAGAGGGGAAGGATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18723442 AGTTTTCAATTCAAAGACTAAAAGTTGTTTATAAAATGACAAACTATTTAGACAAAATGATGTGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
18723507 CTTCTCGAGCATGGAATGTTCG
194 TTTCCCGAGCATGGAATGTTCG
* * ** * * ** **
18723529 AAAAATTACTCTAAGGAATGGATTGTCTTGAAAACTTTGAGGAACCAAAAATATAAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * * *
18723594 TAAAAGATTGAAAAGTTTTG-AAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACATAAATA
65 TAAAAGTTTGACAAG-TTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
18723658 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCCAAA-GATTCG
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CCAAATGATGCG
* *
18723722 ATTTCCCGAGCATGCACTGTTCG
193 ATTTCCCGAGCATGGAATGTTCG
* * ** * * *
18723745 AAAAATTGCTCGAAGGAATGGAT-AGTTTTGAATGCTTTAAGGAACCAAAGTTTTGAAATAACTC
1 -AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * ** * ** * * *
18723809 GTAAAAGTTTGACTAGTACGAAAATTCGTCCATGGGCCAGGAGTGAAACAATTCTCACGTAAGTA
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
18723874 AGTTTTTAATTCAAAGACC--ATGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
18723937 TTTCTCAAGCATGAAATGTTCGG
194 TTTCCCGAGCATGGAATGTTC-G
* * * * * * * *
18723960 AATATTGCTTGAATGAATGGAAT-TTCTTGAGTGCTTTAAGGAACCGAAGTTGTAAAAGAAAC-C
1 AAAATTGCTCGAAGGAATGG-ATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAG-AACTC
* ** *
18724023 GCAAAAGTTTGACAAGTTCGGTAGTTCGG-CAAGGAACCAAGAGAGAAACAATTCTCATGTAAAT
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
18724087 AAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAATTGACGAACTATTTAGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
18724152 ATTTCTCGAACCTGGAATGTTTGG
193 ATTTCCCGAGCATGGAATG-TTCG
* * * * *
18724176 AAAATTGTTCGAAGGAATGGATCGTCTTGAATCCATTAAGGAACTGAAATTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * * *
18724241 AAAAGTTTGACAAGTTTGATAGTTCGGACTAGAACCAA-A-AGAGACGATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * *
18724304 TTTTTAATTCAAAGACTAAAAGTTGTTTATATAATGACAAACAATTTAGACAAAATGATGTGATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
**
18724369 TTTCGAGCATGGAATGTTCAG
196 TCCCGAGCATGGAATGTTC-G
* * * * * * *
18724390 AAAATTGCTCGAACGAATGGATCGTCTTTAATACTTTAAGGAACCGAAGTTTTGAAAGAATTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * *** *
18724455 AAAAGTCTT-TCAAGTT-TAGAAGTTC-GTCTAAGAGGTAAGAGAGAAATAATTCTCACGTAAAT
66 AAAAGT-TTGACAAGTTCGA-AAGTTCGGAC-AAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
18724517 AAGTTTTTAATTCATAGACCAAATGTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
18724582 ATTTCCTGGAGTATGGAATGTTTG
193 ATTTCC-CGAGCATGGAATGTTCG
* * * * * * * * * *
18724606 AAAATTTTCTTGAATGAATTTG-TCGTCTTCAATATTTTATGGAACTGAAGTCATAAAAGAAATC
1 AAAA-TTGCTCGAAGGAA-TGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * * * * *
18724670 GTAACATTTTGACAAGTTTGGAAGTTC-GATCAAGAACGAATAGAGAAACAATTCTCATGTAAAT
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGA-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
18724734 AAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTAAGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
18724799 ACTTCCCGAGCATGGAA---T-G
193 ATTTCCCGAGCATGGAATGTTCG
** * ** * *
18724818 ----TT--T-GAAGGAATGGATTGTCTTTAATACTTTAAGGAACCAAAGTTTTGAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* ** ** *
18724876 AAAAGCTTT-ACAAGTTCGAAAGCTCGTCCAAGAGGCAAGAGAGAAACAATTCTCACTTAAAT--
66 AAAAG-TTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
18724938 GTTTTTAATTCAAAGA--AAAATGTTGTATTA-AAAAAGACAAACTCTTTAGGCCAAATGATGCG
130 GTTTTTAATTCAAAGACCAAAA-GTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
18725000 ATTTCCCGAGCATGGAATGTTCCA
193 ATTTCCCGAGCATGGAATGTT-CG
* * * * * *
18725024 AAAATTGCTC---------G----TCTTCAATATTTTATGGAA-TCGAAGTTACAAAAAAACTCA
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCG
* * * * * * *
18725075 TAACAA-TTTGACAAATTCGAAAATTTGGCCAAGAACCAATAGAGAAATAATTCTTACGTAAATA
65 TAA-AAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18725139 AGTTTTTAATTGAAAGACCAAAAGCTGTTTACAAAATTACAAACTATTTAGACCAAATAACGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
18725204 TTTCCCAAGCAAGGAATGTTTTG
194 TTTCCCGAGCATGGAATG-TTCG
* * *
18725227 -TAATTGCTCGAAGGAATGGAT-AGTCTTGAATACTTTAAGGAA-TCAAAGTTATAAAAGAAATC
1 AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTC
* * ** * * * * *
18725289 GCAAAAGTTTGACAAATTCGGTAGTTCAG-CAAGTAACTAAGAGAAAAATAATTCTCACGTCAAT
64 GTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAG-AACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
18725353 AAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAATTGACGAACTATTTAGTCCAAAAGATGCG
128 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
18725418 ATATCCTGAGAATGGAATGTTCG
193 ATTTCCCGAGCATGGAATGTTCG
** * * * * *
18725441 AAAAATTGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACCGAAGTTTTGAAAGAACTCA
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
** * * *
18725506 TAAAAGTTTGACAAGTTC-ATAAGTTCGTTCAAGAGCCAAGACAGAAACAATTCTCAC--AAAAA
65 TAAAAGTTTGACAAGTTCGA-AAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
18725568 AGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGAGAAAGTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
18725633 TTTCCCAAGCATGGAATGTTTG
194 TTTCCCGAGCATGGAATGTTCG
* * * * *
18725655 AAAATTGCTCGAAGCAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAAATCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * * *
18725720 AAAAGTTTGTCAAGTTCGATAGTTCCG-CAAGGAACCAAGAGAGAAACAATTCTCATGTAAATAA
66 AAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
18725784 GTTTTTAATTCAAAGACAAAAAGTTGTTTACAAATTGACGAACTATTTAGACTAAAAGATGCAAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
18725849 TTCTCGTGCCTGGAATATTCG
195 TTCCCGAGCATGGAATGTTCG
* * * * ** *
18725870 AAAAATTGTTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCCAAGTTATTAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * *** **
18725935 TAAAAGTTTGACAAGTTCAAAAGTTCAGA-AAGAACCAAGAGAGAAATGTTTCTTTCGTAAATAA
65 TAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
18725999 GTTTTTAATTCAAA
130 GTTTTTAATTCAAA
18726013 CACTAGAGAA
Statistics
Matches: 5708, Mismatches: 1200, Indels: 541
0.77 0.16 0.07
Matches are distributed among these distances:
189 2 0.00
191 1 0.00
192 7 0.00
193 9 0.00
194 11 0.00
195 16 0.00
196 3 0.00
197 3 0.00
198 8 0.00
199 20 0.00
200 101 0.02
201 66 0.01
202 65 0.01
203 163 0.03
204 137 0.02
205 68 0.01
206 19 0.00
207 28 0.00
208 30 0.01
209 14 0.00
210 8 0.00
211 9 0.00
212 8 0.00
213 130 0.02
214 752 0.13
215 1447 0.25
216 2208 0.39
217 362 0.06
218 10 0.00
219 3 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (215 bp):
AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCCGAGCATGGAATGTTCG
Found at i:18719769 original size:431 final size:430
Alignment explanation
Indices: 18718619--18726012 Score: 5772
Period size: 430 Copynumber: 17.3 Consensus size: 430
18718609 TTATCATTCA
* * * * * * *
18718619 AAAATTTCACGAAGGAATGGATCGTCTTGAATACTTTATGGAACAGAAGTTATGAAAGAAATCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* **
18718684 AAAAGTTTGACAAGCTT-GGTTGTTTGGCAA-GGAACCAAGAGAGAAACAATTCTCACGTAAATA
66 AAAAGTTTGACAAG-TTCGGTAGTTCAG-AAGGGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18718747 AGTTTTTAATACAAAGACCAAAATTTGTTTACAAATTGATGAAGTATTTAGACCAAATGATGCGA
129 AGTTTTTAATTCAAAGACCAAAATTT-TTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGA
* * * * * **
18718812 TTTCCCGAGCCTAAAATATTC-AGAAAATTGTTTGAAGGAATGGAGCATCTTGAATAAATTAAGG
193 TTTCCCGAGCATGAAATGTTCGA-AAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGG
* * * * * *
18718876 AACTGAAATTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGAAACTTCTGATAAGAACCAAGAG
257 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAG
* ** * * * *
18718941 AGAAATGATTCTCACAAAAATAACTTTTTAATTCAAAGGCTAAAAGTTGTTTATAAAATGACAAA
322 AGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAAA
* * * *
18719006 GTATTTAGACAAAATGCTACGATTTCCCAAGCATGGAATGTTCG
387 CTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
** * * * *
18719050 AAAAATTGCTCGAAGGAATCAAT-AGTCTTGAATACTTTAAGGAACCGAAGTTTTGAAAGAACTT
1 -AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
** ** * * * * ** *
18719114 ATAAAAGTTTGACAAGTTCGAAAG-TCAGTCCGAGAGCCAAGGGAGAAACAATTCTCTCACAAAA
64 ATAAAAGTTTGACAAGTTCGGTAGTTCAG-AAGGGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
18719178 AAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATGACA-TACTATTTAAACCAAATGATTT
128 AAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAATTGA-AGAACTATTTAGACCAAAAGATGT
* * * * * * * * *
18719242 GATTTCCCGATCATGGAATGTTGGGAATATTGCTCGAATGAATGGGTCATCTTGAATACTTTAGG
191 GATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAG
** * * * * * *
18719307 GAATTGAAGTTATAAAAGGAGTCTTAAAATTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGA
256 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGA
* * * * *
18719372 GAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGATAA
321 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAA
**
18719437 ACTATTTAGATC-AAATGATGCGATTTTTCGAGCATGGAATGTTCG
386 ACTATTTAGA-CAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * *
18719482 AAAATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATCAC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
*
18719547 AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCACACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
18719612 GTTTT-ATGTCAAAGACCAAAATTTTTTACAAATTAAAGAACTATTTAGACCAAAAGATGTGATT
131 TTTTTAAT-TCAAAGACCAAAATTTTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGATT
* * * * * *
18719676 TCTCGAGCTTGAAATGTTCGAAAAATTATTCGAAGGAATGGATCGTTTTGATTACTTTAAGGAAC
195 TCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
* * *
18719741 CGAAGTTATAAAAGAACTCGTAAAAATTTGACAAGTCCGAAAGTTCGGACAAGAACCAAGAGGGA
260 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGA
* * *
18719806 AATGATTCTCACGTAAATAA-TTTTTAATTGAAAGACTAAAA-CTTGTTTATAAAATGACAAACT
325 AATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGC-TATTTATAAAATGACAAACT
* * *
18719869 ATTTAGAAAAAATGATGCGA-CTCTCCGAGCATGGAATGTTCAA
389 ATTTAGACAAAATGATGCGATTTC-CCGAGCATGGAATGTTC-G
* ** * * ** *
18719912 AAAATTGCTCCAAGGAATGGATCGCCTTGAAAACTTTGAGGAACCGAAAATATAAAAGAACTCAT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* * * * * * *
18719977 AAAAGATTGAAAAGTTTGGAAGTTCAGACA--AAAACATAGAGAGAAACAATTCTCACATAAATA
66 AAAAGTTTGACAAGTTCGGTAGTTCAGA-AGGGAACCA-AGAGAGAAACAATTCTCACGTAAATA
* * *
18720040 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGGCA-AACTATTTAGACCAAAAGAT-TC
129 AGTTTTTAATTCAAAGACCAAAA-TTTTTTAC-AAATTGAAGAACTATTTAGACCAAAAGATGT-
* * * * *
18720103 AATTTCTCGAGCAT-AGACTGTTCGAAAAATTGCTC---GG-A-GGA--A----GAATGCTTTAA
191 GATTTCCCGAGCATGA-AATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAA
* * * * ***
18720156 GGAACCGAAGTTTTGAAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAG--CCAAG
255 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAG
* * * * * *
18720219 AGTGAAAAAATTCTCACGTAAATAAGTTTTTAGTTCAAAGACTAAATA-TTGTTTACAAAATGAC
320 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAA-AGCTATTTATAAAATGAC
* * * *
18720283 CAACTACTTT-GACCAAATGATGCGATTTCTCGAGCATGGAATGATTGG
384 AAACTA-TTTAGACAAAATGATGCGATTTCCCGAGCATGGAATG-TTCG
* * * * * * *
18720331 AAGATTGCTCGAATGAATGGAACGTC-TGTAATACTTTAAAGAACAGAAGTTATAAAAGAAATCG
1 AAAATTGCTCGAAGGAATGGATCATCTTG-AATACTTTAAGGAACCGAAGTTATAAAAGAAATCA
* *
18720395 TAAAAAGTTTGACAAGTTCGGTAGTTC-GACAAGGAACCAAGAGAGAAACAATTCTCATGTAAAT
65 T-AAAAGTTTGACAAGTTCGGTAGTTCAGA-AGGGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * *
18720459 AAGTTTTTAATTCAAAGAACAAAATTTGTCTACAAATTGACGTACTATTTAGACCAAATGATGCG
128 AAGTTTTTAATTCAAAGACCAAAATTT-TTTACAAATTGAAGAACTATTTAGACCAAAAGATGTG
* * * * * *
18720524 ATTTCCCGAACCT-AGAATGTTCGAAAAATTGTTTGAAGGAATGGATAATGTTGAATACATTAAG
192 ATTTCCCGAGCATGA-AATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * * * * *
18720588 GAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGATAGTTTGGACTAGAACAAAGA
256 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGA
* * * * *
18720653 GAGAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGCTATTTACAAAATGATAA
321 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAA
* * *
18720718 ACTATTTCGACAAAATGATACGATTTCCCGAGCATGGAAAGTTCG
386 ACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
**
18720763 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* * * * *
18720828 AAAAGTTTGACAAGTTTGGTAGTTCGGAAGGGAACCAAGAGAGAAACAATTCACACTTGAATAAG
66 AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
18720893 ATTTT-ATGTCAAAGACCAAAATTTTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGATT
131 TTTTTAAT-TCAAAGACCAAAATTTTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGATT
* * * * * * * *
18720957 TCCCTAACTTGAAATGTTCGAAAAATTATTCGATGGAATGGATCGTTTTGATTACTTTAAGGAAC
195 TCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
* * * * *
18721022 TGAAGTTATAAAAGAACTCATAAAAGTTAGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGGGA
260 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGA
* *
18721087 AATGATTCTCACGTAAATAAGTTTTTCATTCAAAGACTAAAAGCTATTTATAAAATGACAAACTA
325 AATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAAACTA
* * * *
18721152 TTTAGACAAAATGATGCGACTTCTCGAGCATGGAGTGTTTG
390 TTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
18721193 AAAAATTGCTCGAAGGAATGGATC-TCTTTAATACTTTAAGGAACC-AATGTTTTGAAAGAACTC
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAAATC
* * * * *
18721256 ATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAGG---CAAGAGAGAAACACTTCCCACGTAA
64 ATAAAAGTTTGACAAGTTCGGTAGTTCA--GAAG-GGAACCAAGAGAGAAACAATTCTCACGTAA
* ** * * *
18721318 ATATGTTTTTAAGCCAAAGGCC-AAATGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGA
126 ATAAGTTTTTAATTCAAAGACCAAAAT-TT-TTTACAAATTGA-AGAACTATTTAGACCAAAAGA
* * * ** * * *
18721381 TGCGATTTCCCAAGCATGGAATGTTCGAATTATTGCTCGAATGAATGGGTCATCTTGAATACTTT
188 TGTGATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTT
* * * * * *
18721446 AGGGAATTC-AAGTTATAAAAGAAGTCGTAAAA-TTCTGACAAGTTCGGAAGTTAGGCCAAGAAC
253 AAGGAA-CCGAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGAAAGTTCGGACAAGAAC
* * * *
18721509 CAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACAAAAAGCTATTTAGAAAAT
316 CAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAAT
* * *
18721574 GATAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
381 GACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * ***
18721624 AAAATTGCTCAAAGGAATGGATCATTTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATTGC
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* * * * *
18721689 AAAAGTTTAACAAGTTCGATAGTTCGGAAGGGATCCAAGAGAGAAACAATTCACACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
18721754 TTTTT-ATGTCAAAGACCAAAAGTTGTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGAT
131 TTTTTAAT-TCAAAGACCAAAA-TTTTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGAT
* * * * * *
18721818 TTCCTGAGCCTGAAATGTTCAAAAAATTATTC-AATGGAATGGATCATTTTGATTACTTTAAGGA
194 TTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAA-GGAATGGATCATCTTGAATACTTTAAGGA
* * * *
18721882 ACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTTGGACAAGAACCAAGAGG
258 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGA
* * * * * *
18721947 GAAATGATTCTCATGTAAATAAGTTTTTAATTTAAAGACTAAAAGTTGTTTATAAAATGACAAAA
323 GAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAAAC
* * * *
18722012 TATTTAGACAAAATGATGCGACTTCTCGAGCAAGGAATGCTCG
388 TATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * * * ** * **
18722055 AAAAATTTCTCCAAGGAATGGAGCATCTCGAAAACTTTGAGGAACTGAAAATATAAAAGAACTTG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCA
* * * * * * *
18722120 TAAAAGATTAAAAAGTTTGGAAGTTCGGACA-AGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGTTTGACAAGTTCGGTAGTTCAGA-AGGGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * ** *
18722184 AGTTTTTAATTCAAAGACCAAAAGATTCGATTTCCAGA--GCATGGGCTA-TT---CGAAAA-AT
129 AGTTTTTAATTCAAAGACC-AAA-ATT--TTTTACAAATTG-AAGAACTATTTAGACCAAAAGAT
* * ** * * * *
18722242 -TG----CTCGA--AGGAAGGGGTAGTCTG--GAA-TGCTT-TAAGGAATCGA--AGTTTTGAA-
189 GTGATTTCCCGAGCATGAA-ATGT--TC-GAAAAATTG-TTCGAAGGAATGGATCA-TCTTGAAT
* * *
18722293 A---T----AA-C----TCT-T---A-AA--------AGTTTGAGAAGTTCGGAAGTTC-GTCTA
248 ACTTTAAGGAACCGAAGT-TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGAC-A
** * * * * *
18722332 AGGGCCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATTCAAAGACTAAATGTTGTTTAC
311 AGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTAT
* *
18722397 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG
376 AAAATGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * *
18722452 AAAGATTGCTCGAATGAATGAGATGC--CTTGAATACTTTATGGAATCGAGGTTATAAAAGAAAC
1 AAA-ATTGCTCGAAGGAATG-GAT-CATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAAT
** * *
18722515 CGCAAAAGTTTGACAAGTTCGGTAGTTC-GACAAGGAACCAAGAGAGAAACTATTCTCACGTAAA
63 CATAAAAGTTTGACAAGTTCGGTAGTTCAGA-AGGGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
18722579 TAAGTTTTTAATTCAAAGACTAAAAGTTATTTATATAA-TGACA-AACAATTTAGA-CAAAATGA
127 TAAGTTTTTAATTCAAAGACCAAAA-TTTTTTACA-AATTGA-AGAACTATTTAGACCAAAA-GA
* * * * * * * * *
18722641 TGCGATTTCTCGATCGTGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCTTCTTTAATACTTT
188 TGTGATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTT
* * * * * * * * ** ***
18722706 AAGGAATCAAAGTTTTGAAAGAACTCATAAAAGTTTTACAATTTCGGAAGTTCGTCCAAGAGGTA
253 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCA
* * * * *
18722771 AGAGAGAAATAATTCTCACGTAAATAAGTTTATAA-TCTAAAGA-TCAAATGTTGTTTACAAAAT
318 AGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTC-AAAGACT-AAAAGCTATTTATAAAAT
* * *
18722834 GAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGG
381 GACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATG-TTCG
* * * * * ** * *
18722885 AATATTGCTCGAATGAATGGGTCATCTTGAATAGTTTAGGGAATTGAAGTTATAAAAGAAGTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* * **
18722950 AAAATTTTAACAAGTTCGAAAGTTCAGCCAA--GAACCAAGAGAGAAACAATTCTCACGTAAATA
66 AAAAGTTTGACAAGTTCGGTAGTTCAG--AAGGGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
18723013 AG-TTTTAATTCAAAGACCAAAAGCTATTTACAAAATT-ATA-AACTATTTAGGCCAAATGATAT
129 AGTTTTTAATTCAAAGACCAAAA-TTTTTTAC-AAATTGA-AGAACTATTTAGACCAAAAGATGT
* * * * *
18723075 GATTTGCCGAGCATGGAATGTTCG-GAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAG
191 GATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * ** *** *
18723139 GAACTGAAGTTATAAAAGAAATCACAAAAGTTTGACAAGTTCGGTTG-TCCGA-AAGGGAACCAA
256 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAA--GAACCAA
* * * * * * * *
18723202 GAGAGAAACAATTCACACGTAAATAAG-TTTT-ATATCAAAGACCAAAAGTTGTTTACAAATTTA
319 GAGAGAAATAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACTAAAAGCTATTTATAAAATGA
* * ** * *
18723265 -AGAACTATTTAGACCAAAA-GAAGTGATTTCCAAAG-ACTGAAATGTTTG
383 CA-AACTATTTAGA-CAAAATGATGCGATTTCCCGAGCA-TGGAATGTTCG
** * * * *
18723313 AAAAATTATTCGAAGGAATGGATC-GCTTTGATTTCTTTAAGGAACCGAAGTCATAAAA-AAACT
1 -AAAATTGCTCGAAGGAATGGATCATC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAAA-T
* ** * *** * * **
18723376 CGTAAAAGTTTGACAAGTTCGAAAGTTCGGAAAATAACCAAGAGGGGAAGGATTCTCACGTAAAT
63 CATAAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
18723441 AAGTTTTCAATTCAAAGACTAAAAGTTGTTTATAAAATGACA-AACTATTTAGA-CAAAATGATG
128 AAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAATTGA-AGAACTATTTAGACCAAAA-GATG
* * * ** * ** * *
18723504 TGACTTCTCGAGCATGGAATGTTCGAAAAATTACTCTAAGGAATGGATTGTCTTGAAAACTTTGA
190 TGATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAA
* ** * * *
18723569 GGAACCAAAAATATAAAAGAACTCGTAAAAGATTGAAAAGTTTTG-AAGTTCGGACAAGAACCAA
255 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCGGACAAGAACCAA
* * * * * *
18723633 GAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
319 GAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGAC
* * * *
18723698 AAACTATTTAGACCCAAA-GATTCGATTTCCCGAGCATGCACTGTTCG
384 AAACTATTTAGA-CAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * * *
18723745 AAAAATTGCTCGAAGGAATGGAT-AGTTTTGAATGCTTTAAGGAACCAAAGTTTTGAAATAACTC
1 -AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
* * * ** * * * *
18723809 GTAAAAGTTTGACTAGTACGAAAATTC-GTCCATGGG--CCAGGAGTGAAACAATTCTCACGTAA
64 ATAAAAGTTTGACAAGTTCGGTAGTTCAG---AAGGGAACCAAGAGAGAAACAATTCTCACGTAA
* ** * * *
18723871 GTAAGTTTTTAATTCAAAGACC-ATGTTGTTTACAAAATGATA-AACTATTTAGACCAAATGATG
126 ATAAGTTTTTAATTCAAAGACCAAAATTTTTTACAAATTGA-AGAACTATTTAGACCAAAAGATG
* * * * * * * * *
18723934 CGATTTCTCAAGCATGAAATGTTCGGAATATTGCTT-GAATGAATGGAAT-TTCTTGAGTGCTTT
190 TGATTTCCCGAGCATGAAATGTTCGAAAAATTG-TTCGAAGGAATGG-ATCATCTTGAATACTTT
* * **
18723997 AAGGAACCGAAGTTGTAAAAGAAAC-CGCAAAAGTTTGACAAGTTCGGTAGTTCGG-CAAGGAAC
253 AAGGAACCGAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAAC
* * ** * * *
18724060 CAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAAC-AAAATTTGTTTACAAAT
316 CAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACTAAAAGCTATTTATAAAA
* * * * * *
18724124 TGACGAACTATTTAGACCAAATGATGCGATTTCTCGAACCTGGAATGTTTGG
380 TGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATG-TTCG
* * * * * * * *
18724176 AAAATTGTTCGAAGGAATGGATCGTCTTGAATCCATTAAGGAACTGAAATTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
* * * *** * *
18724241 AAAAGTTTGACAAGTTTGATAGTTCGGACTAGAACCAA-A-AGAGACGATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
18724304 TTTTTAATTCAAAGACTAAAAGTTGTTTATATAA-TGACA-AACAATTTAGA-CAAAATGATGTG
131 TTTTTAATTCAAAGACCAAAA-TTTTTTACA-AATTGA-AGAACTATTTAGACCAAAA-GATGTG
** * * * * *
18724366 ATTTTTCGAGCATGGAATGTTC-AGAAAATTGCTCGAACGAATGGATCGTCTTTAATACTTTAAG
192 ATTTCCCGAGCATGAAATGTTCGA-AAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * * * * * ***
18724430 GAACCGAAGTTTTGAAAGAATTCGTAAAAGTCTT-TCAAGTT-TAGAAGTTC-GTCTAAGAGGTA
256 GAACCGAAGTTATAAAAGAACTCGTAAAAGT-TTGACAAGTTCGA-AAGTTCGGAC-AAGAACCA
* * * * * *
18724492 AGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCATAGACCAAATGTTGTTTACAAAATGA
318 AGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGA
* * * * *
18724557 CAAATTATTTAGACCAAATGATGCGATTTCCTGGAGTATGGAATGTTTG
383 CAAACTATTTAGACAAAATGATGCGATTTCC-CGAGCATGGAATGTTCG
* * * * * * * * * *
18724606 AAAATTTTCTTGAATGAATTTG-TCGTCTTCAATATTTTATGGAACTGAAGTCATAAAAGAAATC
1 AAAA-TTGCTCGAAGGAA-TGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
* * * * * * * * *
18724670 GTAACATTTTGACAAGTTTGGAAGTTC-GATCA-AGAACGAATAGAGAAACAATTCTCATGTAAA
64 ATAAAAGTTTGACAAGTTCGGTAGTTCAGA--AGGGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * * *
18724733 TAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACA-AACTATTAAGACCAAATGATG
127 TAAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAATTGA-AGAACTATTTAGACCAAAAGATG
* * * ** *
18724797 CGACTTCCCGAGC-----ATG---G---AA-TGTTTGAAGGAATGGATTGTCTTTAATACTTTAA
190 TGATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAA
* * * * ** **
18724850 GGAACCAAAGTTTTGAAAGAACTCGTAAAAGCTTT-ACAAGTTCGAAAGCTCGTCCAAGAGGCAA
255 GGAACCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGAAAGTTCGGACAAGAACCAA
* * * * *
18724914 GAGAGAAACAATTCTCACTTAAAT--GTTTTTAATTCAAAGA--AAAATGTTGTATTA-AAAAAG
319 GAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAA-GCTAT-TTATAAAATG
* * * *
18724974 ACAAACTCTTTAGGCCAAATGATGCGATTTCCCGAGCATGGAATGTTCCA
382 ACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTT-CG
* * * * *
18725024 AAAATTGCTC---------G----TCTTCAATATTTTATGGAATCGAAGTTACAAAA-AAACTCA
1 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAA-TCA
* ** * ** * * *
18725075 TAACAA-TTTGACAAATTCGAAAATTTGGCCAA--GAACCAATAGAGAAATAATTCTTACGTAAA
65 TAA-AAGTTTGACAAGTTCGGTAGTTCAG--AAGGGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
18725137 TAAGTTTTTAATTGAAAGACCAAAAGCTGTTTACAAAATT-ACA-AACTATTTAGACCAAATA-A
127 TAAGTTTTTAATTCAAAGACCAAAA-TTTTTTAC-AAATTGA-AGAACTATTTAGACCAAA-AGA
* * * * * * * *
18725199 CGCGATTTCCCAAGCAAGGAATGTTTTG--TAATTGCTCGAAGGAATGGAT-AGTCTTGAATACT
188 TGTGATTTCCCGAGCATGAAATG-TTCGAAAAATTGTTCGAAGGAATGGATCA-TCTTGAATACT
* * * * * ** *
18725261 TTAAGGAATCAAAGTTATAAAAGAAATCGCAAAAGTTTGACAAATTCGGTAGTTCAG-CAAGTAA
251 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAG-AA
* * * * * * * * *
18725325 CTAAGAGAAAAATAATTCTCACGTCAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAT
315 CCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAA
* * * * *
18725390 TGACGAACTATTTAGTCCAAAA-GATGCGATATCCTGAGAATGGAATGTTCG
380 TGACAAACTATTTAG-ACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
** * * * *
18725441 AAAAATTGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACCGAAGTTTTGAAAGAACTCA
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCA
* * *
18725506 TAAAAGTTTGACAAGTTC-ATAAGTTC-GTTCAA--GAGCCAAGACAGAAACAATTCTCAC--AA
65 TAAAAGTTTGACAAGTTCGGT-AGTTCAG---AAGGGAACCAAGAGAGAAACAATTCTCACGTAA
* * * * * *
18725565 AAAAGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATG-AGAAAGTATTTAGACCAAATGAT
126 ATAAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAATTGAAG-AACTATTTAGACCAAAAGAT
* * * * * * *
18725629 GCGATTTCCCAAGCATGGAATGTTTG-AAAATTGCTCGAAGCAATGGATCGTCTTGAATACTTTA
189 GTGATTTCCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTA
* * * * *
18725693 AGGAACCGAAGTTATAAAATAAATCGTAAAAGTTTGTCAAGTTCGATAGTTCCG-CAAGGAACCA
254 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAA-GAACCA
* * * * * * *
18725757 AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAATTGA
318 AGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGA
* * * * * *
18725822 CGAACTATTTAGACTAAAA-GATGCAATTTCTCGTGCCTGGAATATTCG
383 CAAACTATTTAGAC-AAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * * * * * *
18725870 AAAAATTGTTCAAAGGAATGGATCGTCATGAATACTTTAAGGAACCCAAGTTATTAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCA
*** * *** **
18725935 TAAAAGTTTGACAAGTTCAAAAGTTCAGAA-AGAACCAAGAGAGAAATGTTTCTTTCGTAAATAA
65 TAAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAA
18725999 GTTTTTAATTCAAA
130 GTTTTTAATTCAAA
18726013 CACTAGAGAA
Statistics
Matches: 5656, Mismatches: 1018, Indels: 578
0.78 0.14 0.08
Matches are distributed among these distances:
394 5 0.00
395 5 0.00
396 17 0.00
397 234 0.04
398 6 0.00
399 1 0.00
400 2 0.00
401 1 0.00
403 4 0.00
404 140 0.02
405 17 0.00
406 14 0.00
407 9 0.00
408 1 0.00
409 5 0.00
410 1 0.00
411 1 0.00
413 1 0.00
414 11 0.00
415 92 0.02
416 1 0.00
417 39 0.01
418 127 0.02
419 150 0.03
420 185 0.03
421 108 0.02
422 14 0.00
423 13 0.00
424 12 0.00
425 5 0.00
426 3 0.00
427 8 0.00
428 87 0.02
429 606 0.11
430 1325 0.23
431 1218 0.22
432 968 0.17
433 201 0.04
434 12 0.00
435 7 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (430 bp):
AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCAT
AAAAGTTTGACAAGTTCGGTAGTTCAGAAGGGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAATTTTTTACAAATTGAAGAACTATTTAGACCAAAAGATGTGATTT
CCCGAGCATGAAATGTTCGAAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC
GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGACAAGAACCAAGAGAGAA
ATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAGCTATTTATAAAATGACAAACTAT
TTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG
Found at i:18720743 original size:19 final size:20
Alignment explanation
Indices: 18720706--18720744 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
18720696 AAAGCTATTT
*
18720706 ACAAAATGATAAACTATTTCG
1 ACAAAATGAT-AACGATTTCG
18720727 ACAAAATGAT-ACGATTTC
1 ACAAAATGATAACGATTTC
18720745 CCGAGCATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (20 bp):
ACAAAATGATAACGATTTCG
Found at i:18721464 original size:861 final size:859
Alignment explanation
Indices: 18718618--18726012 Score: 6852
Period size: 861 Copynumber: 8.7 Consensus size: 859
18718608 CTTATCATTC
* * * * *
18718618 AAAAATTTCACGAAGGAATGGATCGTCTTGAATACTTTATGGAACAGAAGTTATGAAAGAAATCG
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAAATCG
** ***
18718683 TAAAAGTTTGACAAGCTT-GGTTGTTTGGCAAGGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGTTTGACAAG-TTCGGAAGTTCATCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * ** *
18718747 AGTTTTTAATACAAAGACCAAAAT-TTGTTTACAAATTGATGAAGTATTTAGACCAAATGATGCG
128 AGTTTTTAATTCAAAGACC-AAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * ** * * * * **
18718811 ATTTCCCGAGCCTAAAATATTCAGAAAATTGTTTGAAGGAATGGAGCATCTTGAATAAATTAAGG
192 ATTTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGG
* * * * * * *
18718876 AACTGAAATTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGAAACTTCTGATAAGAACCAAGAG
256 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAAGAACCAAGAG
** ** * * * *
18718941 AGAAATGATTCTCACAAAAATAACTTTTTAATTCAAAGGCTAAAAGTTGTTTATAAAATGACAAA
321 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * * **
18719006 GTATTTAGACAAAATGCTACGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATCA
386 CTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGG
* * * * **
18719071 ATAGTCTTGAATACTTTAAGGAACCGAAGTTTTGAAAGAACTTATAAAAGTTTGACAAGTTCGAA
450 AT-CTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAA
*** * * * ** * *
18719136 AG-TCAGTCCGAGAGCCAAGGGAGAAACAATTCTCTCACAAAAAAGTTTTTAATTCAAATACCAA
514 AGTTC-GGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * *
18719200 AAGTTGTTTACAAAATGACATACTATTTAAACCAAATGATTTGATTTCCCGATCATGGAATGTTG
578 AAGTTGTTTACAAATTGACAAACTATTTAGACCAAAAGATGTGATTTCCCGAGCATGGAATGTTC
* * * * * * * * * *
18719265 GGAATATTGCTCGAATGAATGGGTCATCTTGAATACTTTAGGGAATTGAAGTTATAAAAGGAGTC
643 GAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
* * * * * * *
18719330 TTAAAATTTTGACAAGTTCAAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGAAAATA
708 GTAAAAGTTTGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGTAAATA
* * * *
18719395 AGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGATAAACTATTTAGATCAAATGATGCGA
773 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
18719460 TTTTTCGAGCATGGAATGTTCG
838 TTTCTCGAGCATGGAATGTTCG
** * *
18719482 -AAAATTGCTCGAAGGAATGGATTATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAATCA
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAAATCG
* * * *
18719546 CAAAAGTTTGACAAGTTCGGTAGTTCA-GAAGGGAACCAAGAGAGAAACAATTCACACGTAAATA
65 TAAAAGTTTGACAAGTTCGGAAGTTCATCAA--GAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
18719610 AGGTTTT-ATGTCAAAGACCAAAAT-TT-TTTAC-AAATTAAAGAACTATTTAGACCAAAAGATG
128 AGTTTTTAAT-TCAAAGACC-AAATGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATG
* * * * * ** * * *
18719671 TGATTTCTCGAGCTTGAAATGTTCGAAAAATTATTCGAAGGAATGGATCGTTTTGATTACTTTAA
190 CGATTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAA
* * *
18719736 GGAACCGAAGTTATAAAAGAACTCGTAAAAATTTGACAAGTCCGAAAGTTCGGACAAGAACCAAG
254 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAAGAACCAAG
* ** * * * *
18719801 AGGGAAATGATTCTCACGTAAATAA-TTTTTAATTGAAAGACTAAAACTTGTTTATAAAATGACA
319 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * *
18719865 AACTATTTAGAAAAAATGATGCGA-CTCTCCGAGCATGGAATGTTCAAAAAATTGCTCCAAGGAA
384 AACTATTTAGACAAAATGATGCGATTTC-CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAA
* * * ** * * * * *
18719929 TGGATCGCCTTGAAAACTTTGAGGAACCGAAAATATAAAAGAACTCATAAAAGATTGAAAAGTTT
447 TGGATC-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
* * * *
18719994 GGAAGTTCAGACA-A-AAACATAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
511 GAAAGTTCGGA-AGAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * *
18720057 CCAAAAGTTGTTTACAAAATGGCAAACTATTTAGACCAAAAGAT-TCAATTTCTCGAGCATAGAC
574 CCAAAAGTTGTTTACAAATTGACAAACTATTTAGACCAAAAGATGT-GATTTCCCGAGCATGGAA
* * * * * *
18720121 TGTTCGAAAAATTGCTC---GG-A-GGA------AGAATGCTTTAAGGAACCGAAGTTTTGAAAT
638 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAG
* ** * *
18720175 AACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAG--CCAAGAGTGAAAAAATTCTCACGT
703 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGT
* * *
18720238 AAATAAGTTTTTAGTTCAAAGACTAAATA-TTGTTTACAAAATGACCAACTACTTT-GACCAAAT
768 AAATAAGTTTTTAATTCAAAGACCAAA-AGTTGTTTACAAAATGACAAACTA-TTTAGACCAAAT
18720301 GATGCGATTTCTCGAGCATGGAATGATT-G
831 GATGCGATTTCTCGAGCATGGAATG-TTCG
* * * * * *
18720330 GAAGATTGCTCGAATGAATGGAACGTC-TGTAATACTTTAAAGAACAGAAGTTATAAAAGAAATC
1 AAAAATTGCTCGAAGGAATGGATCGTCTTG-AATACTTTAAGGAAC-CAAGTTATAAAAGAAATC
* *
18720394 GTAAAAAGTTTGACAAGTTCGGTAGTTCGA-CAAGGAACCAAGAGAGAAACAATTCTCATGTAAA
64 GT-AAAAGTTTGACAAGTTCGGAAGTTC-ATCAA-GAACCAAGAGAGAAACAATTCTCACGTAAA
* * * **
18720458 TAAGTTTTTAATTCAAAGAACAAAAT-TTGTCTACAAATTGACGTACTATTTAGACCAAATGATG
126 TAAGTTTTTAATTCAAAG-ACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * *
18720522 CGATTTCCCGAA-CCTAGAATGTTCGAAAAATTGTTTGAAGGAATGGATAATGTTGAATACATTA
190 CGATTTCCC-AAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTA
* * * * *
18720586 AGGAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGATAGTTTGGACTAGAACAAA
253 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAAGAACCAA
* * * *
18720651 GAGAGAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGCTATTTACAAAATGAT
318 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * *
18720716 AAACTATTTCGACAAAATGATACGATTTCCCGAGCATGGAAAGTTCGAAAATTGCTCGAAGGAAT
383 AAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAAT
* *
18720781 GGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGCAAAAGTTTGACAAGTTTG
448 GGATC-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
** * * * * *
18720846 GTAGTTCGGAAGGGAACCAAGAGAGAAACAATTCACACTTGAATAAGATTTT-ATGTCAAAGACC
512 AAAGTTCGGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACC
* * * * *
18720910 AAAA-TTTTTTACAAATTGA-AGAACTATTTAGACCAAAAGATGTGATTTCCCTAACTTGAAATG
576 AAAAGTTGTTTACAAATTGACA-AACTATTTAGACCAAAAGATGTGATTTCCCGAGCATGGAATG
** * *
18720973 TTCGAAAAATTATTCGATGGAATGGATCGTTTTGATTACTTTAAGGAACTGAAGTTATAAAAGAA
640 TTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
* * * *
18721038 CTCATAAAAGTTAGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGGGAAATGATTCTCACGTAA
705 CTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGTAA
* * * * * *
18721103 ATAAGTTTTTCATTCAAAGACTAAAAGCTATTTATAAAATGACAAACTATTTAGACAAAATGATG
770 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * *
18721168 CGACTTCTCGAGCATGGAGTGTTTG
835 CGATTTCTCGAGCATGGAATGTTCG
* * * * *
18721193 AAAAATTGCTCGAAGGAATGGATC-TCTTTAATACTTTAAGGAACCAATGTTTTGAAAGAACTCA
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAAATCG
* ** * * *
18721257 TAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAGGCAAGAGAGAAACACTTCCCACGTAAATAT
65 TAAAAGTTTGACAAGTTCGGAAGTTCAT-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
** *
18721322 GTTTTTAAGCCAAAGGCCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
129 GTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
18721387 TTCCCAAGCATGGAATGTTCGAATTATTGCTCGAATGAATGGGTCATCTTGAATACTTTAGGGAA
194 TTCCCAAGCATGGAATGTTCGAA-AATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
* * * *
18721452 TTC-AAGTTATAAAAGAAGTCGTAAAA-TTCTGACAAGTTCGGA-AGTTAGGCCAAGAACCAAGA
258 -CCGAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTC-GATAGTTCGGACAAGAACCAAGA
* * * * * *
18721514 GAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGACAAAAAGCTATTTAGAAAATGATAA
320 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * *
18721579 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCAAAGGAATGG
385 ACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGG
* * * * * * *
18721644 ATCATTTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATTGCAAAAGTTTAACAAGTTCGAT
450 ATC-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAA
* * *
18721709 AGTTCGGAAGGGATCCAAGAGAGAAACAATTCACACGTAAATAAGTTTTT-ATGTCAAAGACCAA
514 AGTTCGGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAA
* * *
18721773 AAGTTGTTTACAAATTGA-AGAACTATTTAGACCAAAAGATGTGATTTCCTGAGCCTGAAATGTT
578 AAGTTGTTTACAAATTGACA-AACTATTTAGACCAAAAGATGTGATTTCCCGAGCATGGAATGTT
* ** * *
18721837 CAAAAAATTATTC-AATGGAATGGATCATTTTGATTACTTTAAGGAACTGAAGTTATAAAAGAAC
642 CGAAAAATTGCTCGAA-GGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAC
* ** * * *
18721901 TCGTAAAAGTTTGACAAGTTCAAAAGTTTGGACAAGAACCAAGAGGGAAATGATTCTCATGTAAA
706 TCGTAAAAGTTTGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGTAAA
* * * * *
18721966 TAAGTTTTTAATTTAAAGACTAAAAGTTGTTTATAAAATGACAAAATATTTAGACAAAATGATGC
771 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
18722031 GACTTCTCGAGCAAGGAATGCTCG
836 GATTTCTCGAGCATGGAATGTTCG
* * * * * * * * ** * *
18722055 AAAAATTTCTCCAAGGAATGGAGCATCTCGAAAACTTTGAGGAACTGAAAATATAAAAGAACTTG
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAAATCG
* * * *
18722120 TAAAAGATTAAAAAGTTTGGAAGTTCGGA-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGTTTGACAAGTTCGGAAGTTC--ATCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
18722184 AGTTTTTAATTCAAAGACCAAA---AGATT-C-----G-------ATTT---CC--A-GA-GC-A
128 AGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * *
18722225 --T-----G---GG-CTATTCGAAAAATTGCTCGAAGGAAGGGGT-AGTCTGGAATGCTTTAAGG
193 TTTCCCAAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGG
* * * * * * * **
18722278 AATCGAAGTTTTGAAATAACTCTTAAAAGTTTGAGAAGTTCGGA-AGTTC-GTCTAAGGGCCAAG
256 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GATAGTTCGGAC-AAGAACCAAG
* * * *
18722341 AGAGAAATAATTCTCACATAAATAAGTTTTTAATTCAAAGACTAAATGTTGTTTACAAAATGACA
319 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * *
18722406 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAGATTGCTCGAATGAAT
384 AACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA-ATTGCTCGAAGGAAT
* * * * *
18722471 GAGATGC-CTTGAATACTTTATGGAATCGAGGTTATAAAAGAAACCGCAAAAGTTTGACAAGTTC
448 G-GAT-CTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
** * *
18722535 GGTAGTTCGACAAG-GAACCAAGAGAGAAACTATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
511 GAAAGTTCG-GAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * *
18722599 TAAAAGTTATTTATATAA-TGACAAACAATTTAGA-CAAAATGATGCGATTTCTCGATCGTGGAA
575 CAAAAGTTGTTTACA-AATTGACAAACTATTTAGACCAAAA-GATGTGATTTCCCGAGCATGGAA
* * * * *
18722662 TGTTCGGAAAATTGCTCGAAGGAATGGATC-TTCTTTAATACTTTAAGGAA-TCAAAGTTTTGAA
638 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTT-TTGAATACTTTAAGGAACT-GAAGTTATAAA
* * * * * ***
18722725 AGAACTCATAAAAGTTTTACAATTTCGGAAGTTC-GTCCAAGAGGTAAGAGAGAAATAATTCTCA
701 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAG-ACAAGAACCAAGAGAGAAATAATTCTCA
* * * *
18722789 CGTAAATAAGTTTATAA-TCTAAAGATCAAATGTTGTTTACAAAATGAAAAACTATTTAGACCAA
765 CGTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* *
18722853 ATGATGCGATTTCCCGAGCATGGAATGTTTG
829 ATGATGCGATTTCTCGAGCATGGAATGTTCG
* * * * * * * ** *
18722884 GAATATTGCTCGAATGAATGGGTCATCTTGAATAGTTTAGGGAATTGAAGTTATAAAAGAAGTCG
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CCAAGTTATAAAAGAAATCG
* * * *
18722949 TAAAATTTTAACAAGTTCGAAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCA-TCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * **
18723014 G-TTTTAATTCAAAGACCAAAAGCTATTTACAAAATTATAAACTATTTAGGCCAAATGATATGAT
129 GTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
18723078 TTGCCGAGCATGGAATGTTCGGAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAAC
194 TTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
* * ** * * *
18723143 TGAAGTTATAAAAGAAATCACAAAAGTTTGACAAGTTCGGTTG-TCCGA-AAGGGAACCAAGAGA
259 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAA--GAACCAAGAGA
* * *
18723206 GAAACAATTCACACGTAAATAAG-TTTT-ATATCAAAGACCAAAAGTTGTTTACAAATTTA-AGA
322 GAAACAATTCTCACGTAAATAAGTTTTTAAT-TCAAAGACCAAAAGTTGTTTACAAAATGACA-A
* * ** * * **
18723268 ACTATTTAGACCAAAA-GAAGTGATTTCCAAAG-ACTGAAATGTTTGAAAAATTATTCGAAGGAA
385 ACTATTTAGA-CAAAATGATGCGATTTCCCGAGCA-TGGAATGTTCG-AAAATTGCTCGAAGGAA
* * * *
18723331 TGGATCGCTTTGATTTCTTTAAGGAACCGAAGTCATAAAA-AAACTCGTAAAAGTTTGACAAGTT
447 TGGATCTC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAAA-TCGTAAAAGTTTGACAAGTT
* * * * ** *
18723395 CGAAAGTTCGGAAAATAACCAAGAGGGGAAGGATTCTCACGTAAATAAGTTTTCAATTCAAAGAC
510 CGAAAGTTCGGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
18723460 TAAAAGTTGTTTATAAAATGACAAACTATTTAGA-CAAAATGATGTGACTTCTCGAGCATGGAAT
575 CAAAAGTTGTTTACAAATTGACAAACTATTTAGACCAAAA-GATGTGATTTCCCGAGCATGGAAT
* * * * * * ** **
18723524 GTTCGAAAAATTACTCTAAGGAATGGATTGTCTTGAAAACTTTGAGGAACCAAAAATATAAAAGA
639 GTTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAGA
* * * * * *
18723589 ACTCGTAAAAGATTGAAAAGTTTTG-AAGTTCGGACAAGAACCAAGAGAGAAACAATTCTCACAT
704 ACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGT
18723653 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCCAAA-G
768 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CCAAATG
* * * *
18723717 ATTCGATTTCCCGAGCATGCACTGTTCG
832 ATGCGATTTCTCGAGCATGGAATGTTCG
* * * * * * *
18723745 AAAAATTGCTCGAAGGAATGGATAGTTTTGAATGCTTTAAGGAACCAAAGTTTTGAAATAACTCG
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAAATCG
* * * * * * ** * * *
18723810 TAAAAGTTTGACTAGTACGAAAATTCGTCCATGGGCCAGGAGTGAAACAATTCTCACGTAAGTAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCAT-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
*
18723875 GTTTTTAATTCAAAGACC--ATGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGAT
129 GTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * * * *
18723938 TTCTCAAGCATGAAATGTTCGGAATATTGCTTGAATGAATGGAAT-TTCTTGAGTGCTTTAAGGA
194 TTCCCAAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGG-ATCATCTTGAATACTTTAAGGA
* * *
18724002 ACCGAAGTTGTAAAAGAAAC-CGCAAAAGTTTGACAAGTTCGGTAGTTCGG-CAAGGAACCAAGA
257 ACCGAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAA-GAACCAAGA
* * * * *
18724065 GAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAATTGACGA
320 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * * *
18724130 ACTATTTAGACCAAATGATGCGATTTCTCGAACCTGGAATGTTTGGAAAATTGTTCGAAGGAATG
385 ACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATG
* * * * * *
18724195 GATCGTCTTGAATCCATTAAGGAACTGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGA
449 GATC-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGA
* ** * * *
18724260 TAGTTCGGACTAGAACCAA-A-AGAGACGATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAA
513 AAGTTCGGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * **
18724323 AAGTTGTTTATATAA-TGACAAACAATTTAGA-CAAAATGATGTGATTTTTCGAGCATGGAATGT
578 AAGTTGTTTACA-AATTGACAAACTATTTAGACCAAAA-GATGTGATTTCCCGAGCATGGAATGT
* * * *
18724386 TC-AGAAAATTGCTCGAACGAATGGATCGTCTTT-AATACTTTAAGGAACCGAAGTTTTGAAAGA
641 TCGA-AAAATTGCTCGAAGGAATGGATCGT-TTTGAATACTTTAAGGAACTGAAGTTATAAAAGA
* * * * ***
18724449 ATTCGTAAAAGTCTT-TCAAGTT-TAGAAGTTC-GTCTAAGAGGTAAGAGAGAAATAATTCTCAC
704 ACTCGTAAAAGT-TTGACAAGTTCGA-AAGTTCAGAC-AAGAACCAAGAGAGAAATAATTCTCAC
* * *
18724511 GTAAATAAGTTTTTAATTCATAGACCAAATGTTGTTTACAAAATGACAAATTATTTAGACCAAAT
766 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * *
18724576 GATGCGATTTCCTGGAGTATGGAATGTTTG
831 GATGCGATTT-CTCGAGCATGGAATGTTCG
* * * * * * * * * *
18724606 AAAATTTTCTTGAATGAATTTG-TCGTCTTCAATATTTTATGGAACTGAAGTCATAAAAGAAATC
1 AAAAATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAAATC
* * * * * *
18724670 GTAACATTTTGACAAGTTTGGAAGTTCGATCAAGAACGAATAGAGAAACAATTCTCATGTAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTC-ATCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
18724735 AGTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGACAAACTATTAAGACCAAATGATGCGA
128 AGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * ** *
18724800 CTTCCCGAGCATGGAA---T-G----TT--T-GAAGGAATGGATTGTCTTTAATACTTTAAGGAA
193 TTTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
* * * * * ** **
18724854 CCAAAGTTTTGAAAGAACTCGTAAAAGCTTT-ACAAGTTCGAAAGCTCGTCCAAGAGGCAAGAGA
258 CCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGATAGTTCGGACAAGAACCAAGAGA
* *
18724918 GAAACAATTCTCACTTAAAT--GTTTTTAATTCAAAGA--AAAATGTTGTATTA-AAAAAGACAA
322 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGT-TTACAAAATGACAA
* * * *
18724978 ACTCTTTAGGCCAAATGATGCGATTTCCCGAGCATGGAATGTTCCAAAAATTGCTC---------
385 ACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAATTGCTCGAAGGAATG
* * * * * * *
18725034 G---TCTTCAATATTTTATGGAATCGAAGTTACAAAA-AAACTCATAACAA-TTTGACAAATTCG
449 GATCTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAA-TCGTAA-AAGTTTGACAAGTTCG
* * * * * * *
18725094 AAAATTTGGCCA-AGAACCAATAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTGAAAGACC
512 AAAGTTCGG-AAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
18725158 AAAAGCTGTTTACAAAATT-ACAAACTATTTAGACCAAATA-ACGCGATTTCCCAAGCAAGGAAT
576 AAAAGTTGTTTAC-AAATTGACAAACTATTTAGACCAAA-AGATGTGATTTCCCGAGCATGGAAT
* * * * *
18725221 GTTTTG--TAATTGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAA-TCAAAGTTATAAAA
639 G-TTCGAAAAATTGCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACT-GAAGTTATAAAA
* * * ** * *
18725283 GAAATCGCAAAAGTTTGACAAATTCGGTAGTTCAG-CAAGTAACTAAGAGAAAAATAATTCTCAC
702 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGACAAG-AACCAAGAGAGAAATAATTCTCAC
* * * * * *
18725347 GTCAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAATTGACGAACTATTTAGTCCAAAA
766 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* *
18725412 GATGCGATATC-CTGAGAATGGAATGTTCG
831 GATGCGATTTCTC-GAGCATGGAATGTTCG
* * * * * *
18725441 AAAAATTGCTCGAAGGAATGGATTGTCTTGAATGCTTTAAGGAACCGAAGTTTTGAAAGAACTCA
1 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAAATCG
** * * * *
18725506 TAAAAGTTTGACAAGTTCATAAGTTCGTTCAAGAGCCAAGACAGAAACAATTCTCAC--AAAAAA
65 TAAAAGTTTGACAAGTTCGGAAGTTC-ATCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
18725569 GTTTTTAATTCAAAGACCAAAAGCTATTTACAAAATGAGAAAGTATTTAGACCAAATGATGCGAT
129 GTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
18725634 TTCCCAAGCATGGAATGTTTGAAAATTGCTCGAAGCAATGGATCGTCTTGAATACTTTAAGGAAC
194 TTCCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
* * * *
18725699 CGAAGTTATAAAATAAATCGTAAAAGTTTGTCAAGTTCGATAGTTCCG-CAAGGAACCAAGAGAG
259 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAA-GAACCAAGAGAG
* * * *
18725763 AAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAATTGACGAACT
323 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * * *
18725828 ATTTAGACTAAAA-GATGCAATTTCTCGTGCCTGGAATATTCGAAAAATTGTTCAAAGGAATGGA
388 ATTTAGAC-AAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGA
* * * * *
18725892 TCGTCATGAATACTTTAAGGAACCCAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTCAAAA
451 TC-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAA
* *** **
18725957 GTTCAGAA-AGAACCAAGAGAGAAATGTTTCTTTCGTAAATAAGTTTTTAATTCAAA
515 GTTCGGAAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
18726013 CACTAGAGAA
Statistics
Matches: 5379, Mismatches: 920, Indels: 469
0.79 0.14 0.07
Matches are distributed among these distances:
827 6 0.00
828 212 0.04
829 441 0.08
830 13 0.00
831 3 0.00
832 2 0.00
833 80 0.01
834 4 0.00
835 167 0.03
836 157 0.03
837 82 0.02
838 8 0.00
839 3 0.00
840 2 0.00
841 4 0.00
842 1 0.00
843 7 0.00
844 98 0.02
846 20 0.00
847 64 0.01
848 161 0.03
849 80 0.01
850 195 0.04
851 366 0.07
852 85 0.02
853 4 0.00
854 5 0.00
855 3 0.00
856 3 0.00
857 1 0.00
858 2 0.00
859 59 0.01
860 387 0.07
861 1481 0.28
862 763 0.14
863 407 0.08
864 2 0.00
865 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (859 bp):
AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAGTTATAAAAGAAATCGT
AAAAGTTTGACAAGTTCGGAAGTTCATCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCCAAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGATAGTTCGGACAAGAACCAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
TAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCTCT
TGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGG
AAGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAATTGACAAACTATTTAGACCAAAAGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATT
GCTCGAAGGAATGGATCGTTTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGT
TTGACAAGTTCGAAAGTTCAGACAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGA
GCATGGAATGTTCG
Found at i:18744946 original size:20 final size:21
Alignment explanation
Indices: 18744909--18744948 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
18744899 TTGAATGACA
18744909 AAAATGAAAAAAAAAATAAAG
1 AAAATGAAAAAAAAAATAAAG
* *
18744930 AAAA-GAAAAAGAGAATAAA
1 AAAATGAAAAAAAAAATAAA
18744949 TTGCTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (21 bp):
AAAATGAAAAAAAAAATAAAG
Found at i:18749020 original size:15 final size:16
Alignment explanation
Indices: 18749000--18749029 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18748990 CTAACCGACG
18749000 AGGTGTT-CAGATTTT
1 AGGTGTTACAGATTTT
18749015 AGGTGTTACAGATTT
1 AGGTGTTACAGATTT
18749030 GCTTGGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (16 bp):
AGGTGTTACAGATTTT
Found at i:18753117 original size:22 final size:22
Alignment explanation
Indices: 18753089--18753135 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
18753079 TGATCTCCGA
18753089 TTTGGGT-CTTACCAATTGAAGG
1 TTTGGGTAC-TACCAATTGAAGG
*
18753111 TTTGGGTACTACCAGTTGAAGG
1 TTTGGGTACTACCAATTGAAGG
18753133 TTT
1 TTT
18753136 AGGATTCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (22 bp):
TTTGGGTACTACCAATTGAAGG
Found at i:18759400 original size:19 final size:19
Alignment explanation
Indices: 18759376--18759418 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
18759366 AAAAAATTAT
18759376 AAAATATTAAAGTTTAATA
1 AAAATATTAAAGTTTAATA
* * *
18759395 AAAATATTTAATTTTATTA
1 AAAATATTAAAGTTTAATA
18759414 AAAAT
1 AAAAT
18759419 TAGAAACAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
AAAATATTAAAGTTTAATA
Found at i:18762005 original size:307 final size:300
Alignment explanation
Indices: 18761176--18762087 Score: 1445
Period size: 300 Copynumber: 3.0 Consensus size: 300
18761166 ATGTCCCTTG
*
18761176 TATGGATGATGATCCTTTGGTTACTACTGGATGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAA-ATTTTTAGCTAAATCAAAGTTTTC
18761241 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAATGTTAATCATAAAT
65 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAA-GTTAATCATAAAT
*
18761306 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGACTACAATTGAGCTATCACCTTTT
129 TAGTTTGTCAATCCAA-GGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
* * *
18761371 GTGTAATGTTATTGGTGTAGTTCAAAAGATCATGAGAGTTTTCGGTATCCAATTCAATATCCAAC
193 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
*
18761436 TAGAGAAAAAAGTAAGTACGAATTTACGCCTTTTGTTGACTCT
258 TAGAGAAAAAAGTAAGTATGAATTTACGCCTTTTGTTGACTCT
* *
18761479 TATGGATGATGATCCTTTGGTTACTACTGGTTTTGGGCAATTTTTTTTAGCTAAATCAAAGTTTT
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAA--ATTTTTAGCTAAATCAAAGTTTT
*
18761544 CAATTCCATAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAA
64 CAATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGG-AAAGTTAATCATAAA
* * * *
18761609 TTA----GTCAATCCAAGGCGAGTTGGCCAAATGAAAGGATGAATACAATTGAGATAGCACCTTT
128 TTAGTTTGTCAATCCAAGG-GAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTT
* * *
18761670 TGTGCAATGTTATTGGTGTAGTTCAGAAGATCATTAGAGTTCTCGATGTCCAATTCAATATCCAA
192 TGTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAA
* *
18761735 CTAGAGAAAAAAGTAAGTATGAATTTTCACCTTTTGTTGACTCT
257 CTAGAGAAAAAAGTAAGTATGAATTTACGCCTTTTGTTGACTCT
* * * *
18761779 TATGGATGATGATCCTGTGGTTAGTACTAGTTGTGGGCAACATTTTAGCTAGCTAAATTAAAGTT
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAA-ATTTT---TAGCTAAATCAAAGTT
18761844 TTCAGATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAGAAGTTAATCAT
62 TTCA-ATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGA-AAGTTAATCAT
*
18761909 AAATTAGTTTGTCAATCCAAGTGGAGTTGGCCAAACGAAAGGAGGAAGACAATTGAGCTATCACC
125 AAATTAGTTTGTCAATCCAAG-GGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACC
*
18761974 TTTTGTGTAATGTTATTGGTGTAGTTCAGAAGATTATGAGAGTTTTCGATGTCCAATTCAATATC
189 TTTTGTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATC
*
18762039 CAACTAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
254 CAACTAGAGAAAAAAGTAAGTATGAATTTACGCCTTTTGTTGACTCT
18762086 TA
1 TA
18762088 CTCTAGTGGG
Statistics
Matches: 559, Mismatches: 37, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
299 6 0.01
300 186 0.33
302 20 0.04
303 101 0.18
304 86 0.15
305 3 0.01
307 156 0.28
308 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.33
Consensus pattern (300 bp):
TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAAATTTTTAGCTAAATCAAAGTTTTCA
ATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAGTTAATCATAAATTA
GTTTGTCAATCCAAGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTTGTG
TAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAACTAG
AGAAAAAAGTAAGTATGAATTTACGCCTTTTGTTGACTCT
Found at i:18773841 original size:111 final size:111
Alignment explanation
Indices: 18773647--18773867 Score: 381
Period size: 111 Copynumber: 2.0 Consensus size: 111
18773637 AGTACATCAA
18773647 TATGGTGACATTCCTCTTTAATCTTGCAGGGAATTACTTTAAAATCACTAAAGGTAACGTGTTCA
1 TATGGTGACATTCCTCTTTAATCTTGCAGGGAATTACTTTAAAATCACTAAAGGTAACGTGTTCA
18773712 TCATTGTGTTACATAATTAACTCGCCTTTGAATACGTCTATAAGAT
66 TCATTGTGTTACATAATTAACTCGCCTTTGAATACGTCTATAAGAT
* * *
18773758 TATGGTGACATTCCTCTTTACTCTTGCAGGGAATTGCTTTAAAAAT-AGTAAAGGTAACGTGTTC
1 TATGGTGACATTCCTCTTTAATCTTGCAGGGAATTACTTT-AAAATCACTAAAGGTAACGTGTTC
* *
18773822 ATCATTGTGTTGCATAATTAACTTGCCTTTGAATACGTCTATAAGA
65 ATCATTGTGTTACATAATTAACTCGCCTTTGAATACGTCTATAAGA
18773868 GTACGACCCG
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
111 99 0.95
112 5 0.05
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (111 bp):
TATGGTGACATTCCTCTTTAATCTTGCAGGGAATTACTTTAAAATCACTAAAGGTAACGTGTTCA
TCATTGTGTTACATAATTAACTCGCCTTTGAATACGTCTATAAGAT
Found at i:18780152 original size:216 final size:215
Alignment explanation
Indices: 18779766--18780519 Score: 971
Period size: 216 Copynumber: 3.5 Consensus size: 215
18779756 GACTCGTATC
* *
18779766 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAAGTTGTTTACAAATTGACAAA
1 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * ** *
18779831 CTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGCACGGAAAATTGCTCAAAGGAATGG
66 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTTCTCAAAGGAATGG
* * * * * **
18779896 ATCGTCTCGAATGCTTTAAGGAACCGAGGTTTTGAAAGAACTCGTAAAACTTTGACAAGTTCTTA
131 ATCGTCTTGAATGCTTTAAGGAA-CGAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCGAA
*** *
18779961 AGTTAATCCAA-AAGCCAATA-
195 AGTTCGGCCAAGAA-CCAAGAG
*
18779981 AGGAAACAATTATCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
1 A-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* ** * *
18780046 ACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTTTCTTGAATGATT
65 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTTCTCAAAGGAAT
*
18780110 GGGTCGTCTTGAATGCTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCG
129 GGATCGTCTTGAATGCTTTAAGGAAC-GAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCG
*
18780175 AAAGTTCGGCCAAGAACGAAGAG
193 AAAGTTCGGCCAAGAACCAAGAG
* * * *
18780198 AGAAACAATTCTCACGTAAATAAGTTTTTAATT-TATGAACAAAAAGTTGTTTAAAAAATGACAA
1 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAAGTTGTTTACAAAATGACAA
*** * *
18780262 ACTATTTAGACCAAATGAAATGATTTCCCAAGCATGGAATGTTCGGGAAATTTCTCAAAGGAATG
65 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTTCTCAAAGGAATG
** * * * *
18780327 GATCGTCTTGAATAATTTTAGGATTCGGAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCGG
130 GATCGTCTTGAATGCTTTAAGGA-ACGAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCGA
18780392 AAGTTCGGCCAAGAACCAAGAG
194 AAGTTCGGCCAAGAACCAAGAG
** *
18780414 AGAAACAATTCTCACGTAAATATA-TTTTTAATTCAAAGACCAAAAACTATTTAC-AAATGACAA
1 AGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* *
18780477 ACTATTTAGACCAAATGATGTGATTTCCCGACCATGGAATGTT
65 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
18780520 TGGTGATGCA
Statistics
Matches: 468, Mismatches: 61, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
215 57 0.12
216 400 0.85
217 11 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTTCTCAAAGGAATGG
ATCGTCTTGAATGCTTTAAGGAACGAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTCGAAA
GTTCGGCCAAGAACCAAGAG
Found at i:18781541 original size:25 final size:23
Alignment explanation
Indices: 18781513--18781558 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
18781503 GTTGGATCCA
18781513 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
18781538 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
18781559 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:18789502 original size:21 final size:21
Alignment explanation
Indices: 18789450--18789503 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
18789440 CTGGAGTTTT
18789450 TTGTATTGGTAGAAGCATGAC
1 TTGTATTGGTAGAAGCATGAC
*
18789471 ATGT-TTCGGTAGAAGTCAT-AC
1 TTGTATT-GGTAGAAG-CATGAC
18789492 TTGTATTGGTAG
1 TTGTATTGGTAG
18789504 TACTGCCTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 2 0.07
21 21 0.75
22 5 0.18
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37
Consensus pattern (21 bp):
TTGTATTGGTAGAAGCATGAC
Found at i:18789522 original size:42 final size:42
Alignment explanation
Indices: 18789476--18789571 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
18789466 ATGACATGTT
*
18789476 TCGGTAGAAGTCATACTTGTATTGGTAGTACTGCCTCAAGTA
1 TCGGTAGAAGTCATACTTGTATCGGTAGTACTGCCTCAAGTA
* *
18789518 TCGGTAGAAGTTATACTTGTATCGGTAGTATTGCCTCAAGTA
1 TCGGTAGAAGTCATACTTGTATCGGTAGTACTGCCTCAAGTA
*
18789560 TCAGTAGAAGTC
1 TCGGTAGAAGTC
18789572 TGCACTATTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TCGGTAGAAGTCATACTTGTATCGGTAGTACTGCCTCAAGTA
Found at i:18793660 original size:17 final size:17
Alignment explanation
Indices: 18793638--18793670 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18793628 CAGTCATCAT
18793638 TTTGTTGTTTCCATTTC
1 TTTGTTGTTTCCATTTC
*
18793655 TTTGTTTTTTCCATTT
1 TTTGTTGTTTCCATTT
18793671 TTATTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.15, G:0.09, T:0.70
Consensus pattern (17 bp):
TTTGTTGTTTCCATTTC
Found at i:18804053 original size:77 final size:77
Alignment explanation
Indices: 18803895--18804068 Score: 188
Period size: 77 Copynumber: 2.3 Consensus size: 77
18803885 TTGTGCCCAA
* * * * *
18803895 CGCTAGTCGGATATACCGA-AAATATCAAATGTGAGCCTAGCTCTAGTTGGATATACCAACAATA
1 CGCTAGTCGAATAAACCGACAGATATCAAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATA
**
18803959 TTTTACGCCCAG
66 TTTTACAACCAG
* * * ** *
18803971 TGCTAGTCGAATAAACTGACAGATATCAAATGTGAGCCCAGTTCTAGTTGGATAAACCAATGATG
1 CGCTAGTCGAATAAACCGACAGATATCAAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATA
** *
18804036 TTTTGTAACTAG
66 TTTTACAACCAG
*
18804048 CGCTAGTCGGATAAACCGACA
1 CGCTAGTCGAATAAACCGACA
18804069 AAGATTTTCT
Statistics
Matches: 78, Mismatches: 19, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
76 15 0.19
77 63 0.81
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (77 bp):
CGCTAGTCGAATAAACCGACAGATATCAAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATA
TTTTACAACCAG
Found at i:18806023 original size:16 final size:16
Alignment explanation
Indices: 18806002--18806032 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
18805992 ATTTCTTTTT
18806002 TATTTATTTTTATGTC
1 TATTTATTTTTATGTC
18806018 TATTTATTTTTATGT
1 TATTTATTTTTATGT
18806033 TTTTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.71
Consensus pattern (16 bp):
TATTTATTTTTATGTC
Found at i:18808599 original size:42 final size:42
Alignment explanation
Indices: 18808199--18808598 Score: 550
Period size: 42 Copynumber: 9.5 Consensus size: 42
18808189 AAGGAAAGCA
* * * *
18808199 TTCATTGCATATAGAAGCCCAGGTGTGGAAGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
18808241 TTCATTGCATTTAGAGACTCAAGAGTGGAGG-CCAATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCC-ATTTACTT
* *
18808283 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
18808325 TTCATTTCATTTAGAAGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** * *
18808367 TTCATTTAATTTAGAGGCCCAAGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
18808409 TTCATTTCATTTAGAGGACTAGGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
18808451 TTCATCGCATTTAGAGGCTCAGGTGTGGAGGTCAATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
18808493 TTCATTGCATTTAGACGCCCAGGTGCGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
18808535 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
18808577 TTCATTGCATTTAGAGGCCCAG
1 TTCATTGCATTTAGAGGCCCAG
18808599 ACGTAGAGGA
Statistics
Matches: 313, Mismatches: 43, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
41 2 0.01
42 309 0.99
43 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:18809390 original size:22 final size:22
Alignment explanation
Indices: 18809357--18809405 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
18809347 TGACCTTGAG
*
18809357 AAAATTTTGATTTTTTAAAAA-A
1 AAAATTTAGA-TTTTTAAAAATA
*
18809379 AAAGTTTAGATTTTTAAAAATA
1 AAAATTTAGATTTTTAAAAATA
18809401 AAAAT
1 AAAAT
18809406 ATGTGTTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (22 bp):
AAAATTTAGATTTTTAAAAATA
Found at i:18809572 original size:114 final size:111
Alignment explanation
Indices: 18809367--18809579 Score: 338
Period size: 114 Copynumber: 1.9 Consensus size: 111
18809357 AAAATTTTGA
*
18809367 TTTTTTAAAAAAAAAGTTTAGATTTTTAAAAATAAAAATATGTGTTTAGTCATTTTAAAGAAAAA
1 TTTTTTAAAAAAAAAGTTTAGATTTTAAAAAATAAAAATATGTGTTTAGTCATTTTAAAGAAAAA
18809432 ATTTAAATTTTTAAACAAAATTTTGATTTTTTAAGAAAAGTAGTAT
66 ATTTAAATTTTTAAACAAAATTTTGATTTTTTAAGAAAAGTAGTAT
* *
18809478 TTTTTTAACAAAGAAAGTTTAGATTTTAAAAAATAAAAATTTAT-TTTTTAGTCATTTTAAAGGA
1 TTTTTTAA-AAAAAAAGTTTAGATTTTAAAAAATAAAAA--TATGTGTTTAGTCATTTTAAA-GA
* *
18809542 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTAA
62 AAAAATTTAAATTTTTAAACAAAATTTTGATTTTTTAA
18809580 CTATTTTAAA
Statistics
Matches: 93, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
111 8 0.09
112 28 0.30
113 16 0.17
114 41 0.44
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.44
Consensus pattern (111 bp):
TTTTTTAAAAAAAAAGTTTAGATTTTAAAAAATAAAAATATGTGTTTAGTCATTTTAAAGAAAAA
ATTTAAATTTTTAAACAAAATTTTGATTTTTTAAGAAAAGTAGTAT
Found at i:18810205 original size:21 final size:21
Alignment explanation
Indices: 18810180--18810232 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
18810170 CTTGGATAAT
18810180 TTTTATTTATTCTT-ATTTC-A
1 TTTTATTTATT-TTCATTTCTA
18810200 TCTTTATTTATTTTCATTTCTA
1 T-TTTATTTATTTTCATTTCTA
18810222 TTTCTATTTAT
1 TTT-TATTTAT
18810233 GTTTTTTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.10
21 17 0.59
22 9 0.31
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTATTTATTTTCATTTCTA
Found at i:18810799 original size:3 final size:3
Alignment explanation
Indices: 18810791--18810819 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
18810781 AAATCTTTTA
18810791 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18810820 AAGATCGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18823367 original size:305 final size:303
Alignment explanation
Indices: 18822612--18823525 Score: 1621
Period size: 304 Copynumber: 3.0 Consensus size: 303
18822602 ATGTCCCTCG
*
18822612 TATGGATGATGATCCTTTGGTTACTACTGGATGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
18822677 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
66 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
*
18822742 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGTTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGATATCACCTTTT
** *
18822807 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTAAATATCCAATTCAATATCCAAC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
*
18822872 TAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTAACTCT
261 TAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
* *
18822915 TATGGATGATGATCCTTTGGTTACTACTGGTTTTGGGCAATTTTTTTTAGCTAAATCAAAGTTTT
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAA-TATTTTTAGCTAAATCAAAGTTTT
18822980 CAATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAA
65 CAATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAA
* * * *
18823045 TTAGTTTGTCAATCCAAGGCGAGTTGGCCAAATGAAAGGATGAATACAATTGAGATAGCACCTTT
130 TTAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGATATCACCTTT
*
18823110 TGTGTAATGTTATTGGTGTAGTTCAGAAGATCATCAGAGTTTTCGATGTCCAATTCAATATATCC
195 TGTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTC-A-ATATCC
*
18823175 AACTAGAGAAAAAAGTAAGTATGAATTTGCACCTTTTGTTGACTCT
258 AACTAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
* * *
18823221 TATGGATGATGATCCTTTGGTTACTACTAGTTGTGGGCAACATTTTTAGCTAAATTAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
18823286 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
66 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
* *
18823351 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAAGACAATTGAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGATATCACCTTTT
*
18823416 GTGTAATGTTATTGGTGTAGTTCGGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
18823481 TAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
261 TAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
18823524 TA
1 TA
18823526 CTCTGGTGGG
Statistics
Matches: 580, Mismatches: 28, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
303 91 0.16
304 201 0.35
305 200 0.34
306 88 0.15
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (303 bp):
TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGATATCACCTTTT
GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
TAGAGAAAAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
Found at i:18843113 original size:21 final size:21
Alignment explanation
Indices: 18843073--18843113 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18843063 AAAATTAGTA
** *
18843073 CATTTATTTTTTTTTCTTTTT
1 CATTTATTTTCATTTATTTTT
18843094 CATTTATTTTCATTTATTTT
1 CATTTATTTTCATTTATTTT
18843114 ATTTTTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76
Consensus pattern (21 bp):
CATTTATTTTCATTTATTTTT
Found at i:18844091 original size:11 final size:10
Alignment explanation
Indices: 18844061--18844101 Score: 55
Period size: 10 Copynumber: 3.8 Consensus size: 10
18844051 AAAGTCGAAA
18844061 AGAAAAAAATTG
1 AGAAAAAAA--G
18844073 AGAAAAAAAG
1 AGAAAAAAAG
18844083 AGAAAAAAAG
1 AGAAAAAAAG
18844093 AAGAAAAAA
1 -AGAAAAAA
18844102 TAAAAATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 11 0.39
11 8 0.29
12 9 0.32
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (10 bp):
AGAAAAAAAG
Found at i:18844909 original size:3 final size:3
Alignment explanation
Indices: 18844901--18844933 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
18844891 TAATATTAGG
18844901 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18844934 TATATTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:18845040 original size:25 final size:23
Alignment explanation
Indices: 18844999--18845044 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
18844989 CCAATTAGGG
18844999 AATTATTGTTTAGATTTAATTGT
1 AATTATTGTTTAGATTTAATTGT
*
18845022 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TGTTTAG-ATTTAATT
18845045 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.57
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTGT
Found at i:18846420 original size:216 final size:216
Alignment explanation
Indices: 18846047--18846800 Score: 905
Period size: 216 Copynumber: 3.5 Consensus size: 216
18846037 TGCATCACCA
* * * * * **
18846047 AACATTCCATGGTTGGGAAATCACATCATTTGGTCCAAATAGTTTGTTA-TTTGTAAATAGTTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* *
18846111 TGGTCTTTGAATTAAAAA-TATATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
66 TGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTT
* * * * **
18846175 CCGAACCTGTCAAAACTTTACGAGTTCTTTTATAACTCCGAATCCTAAAATTATTCAAGAAGATC
130 CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTCCG-TTCCTTAAAGCATTCAAGAAGATC
18846240 CATTCCTTTGAG-AAATTTCCTG
194 CATTCCTTTGAGAAAATTTCCTG
* * *
18846262 AACATTCCATGCTTGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * *
18846327 TTGT-TCATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGCTGAACTT
66 TGGTCT-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTT
* * *
18846391 CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGCATTCAAGATGACC
130 CCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAC-TCCGTTCCTTAAAGCATTCAAGAAGATC
* * ** *
18846456 CAATCATTCAAGAAAATTT-TTG
194 CATTCCTTTGAGAAAATTTCCTG
* *
18846478 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
18846543 TGGTCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTC-CTTATTGGCTT-TTGGATGAACT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGG-TTCTTGGCTGAACT
** * * * * * * *
18846606 TAAGAGCTTGTCAAAGTTTTACGAGTTCTTTCAAAACCTCGGTTCCTTAAAGCATTCGAGACGAT
129 TCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAA-CTCCGTTCCTTAAAGCATTCAAGAAGAT
** *
18846671 CCATTCCTTTGAGCAATTTTTCGTG
193 CCATTCCTTTGAG-AAAATTTCCTG
* ** * *
18846696 --CATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
18846759 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
18846801 GATACGAGTC
Statistics
Matches: 464, Mismatches: 63, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
215 47 0.10
216 396 0.85
217 19 0.04
218 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTC
CGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTCCGTTCCTTAAAGCATTCAAGAAGATCCA
TTCCTTTGAGAAAATTTCCTG
Found at i:18853767 original size:208 final size:214
Alignment explanation
Indices: 18853396--18853983 Score: 725
Period size: 216 Copynumber: 2.8 Consensus size: 214
18853386 AATTATGCCT
* *
18853396 GAGTTCTTTTAT-ATTTTCAGTTCCTTAAAGTTTTCAAGATGATCCATTCCTTCGAGCAATTTTT
1 GAGTTCTTTTATAACTTT-AGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTT
* * *
18853460 CGAACATTCCATGCTCGGGAAATCACATCATATT-TCTAAATCGTTTGTCATTTTATAAACAACT
65 CGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTATAAACAACT
* *
18853524 TTTAGTCTTTAAATTAAAAACTTATTTATGTGAGAATCG-T-T-TCTT-TT-TGGT-CGAAC-TT
130 TTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAACCGTTCTCTCTTGTTCTGGTCCGAACTTT
18853582 CTAAACTTGTCAAAATTTTAC
195 C-AAACTTGTCAAAATTTTAC
* * * *
18853603 GAGTTCTTTTATAACTTT-GATTCCCTATAGTATTCAAGATGACCCATTCATTCGAGCAATATTC
1 GAGTTCTTTTATAACTTTAG-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TT-
* *
18853667 TT-G-ACATCCCATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTATAAACAA
63 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTATAAACAA
* * * *
18853730 CTTTTAGTCTTTGAATTAAAAGCTTGTTTACGTGAGAACCGTTTCTCTCTTGGTTCTTGTCCGAA
128 CTTTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAACCG-TTCTCTCTT-GTTCTGGTCCGAA
*
18853795 CTTTCAAACTTGTCAAACTTTTAC
191 CTTTCAAACTTGTCAAAATTTTAC
* * * ** * *
18853819 AAGTTGTTTTATAACTTTAGTTCCTTAAAGTATTCAAAACAATCCATTCCTTCAAACAATTTTTC
1 GAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTC
* * * *
18853884 GAACATTCCAGGCTCGGGAAATCGCATC-TTTTGGTCTAAATAGTTAGTCAATTTGTAAACAACT
66 GAACATTCCATGCTCGGGAAATCGCATCATTTT-GTCTAAATAGTTTGTCATTTTATAAACAACT
* *
18853948 TTTGGTCTTTAAATAAAAAACTTATTTACGTTGAGA
130 TTTAGTCTTTAAATTAAAAACTTATTTACG-TGAGA
18853984 CAAAAAGCTC
Statistics
Matches: 322, Mismatches: 40, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
206 1 0.00
207 74 0.23
208 70 0.22
209 2 0.01
210 1 0.00
211 1 0.00
212 4 0.01
214 4 0.01
215 10 0.03
216 146 0.45
217 9 0.03
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (214 bp):
GAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTC
GAACATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTATAAACAACTT
TTAGTCTTTAAATTAAAAACTTATTTACGTGAGAACCGTTCTCTCTTGTTCTGGTCCGAACTTTC
AAACTTGTCAAAATTTTAC
Found at i:18854003 original size:16 final size:16
Alignment explanation
Indices: 18853978--18854009 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18853968 CTTATTTACG
18853978 TTGAGACAAAAAGCTC
1 TTGAGACAAAAAGCTC
*
18853994 TTGAGCCAAAAAGCTC
1 TTGAGACAAAAAGCTC
18854010 AAACCGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (16 bp):
TTGAGACAAAAAGCTC
Found at i:18855311 original size:31 final size:32
Alignment explanation
Indices: 18855249--18855311 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
18855239 GTGATTGATA
* *
18855249 TTGTGATGCATAGCATGATTTGCTATGATTTG
1 TTGTGATGCATAGCATGATTTCCTATAATTTG
*
18855281 TTGT-ATGTATAGCATGATTTCCTGA-AATTTG
1 TTGTGATGCATAGCATGATTTCCT-ATAATTTG
18855312 AATTTATGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (32 bp):
TTGTGATGCATAGCATGATTTCCTATAATTTG
Found at i:18864391 original size:6 final size:6
Alignment explanation
Indices: 18864382--18864466 Score: 89
Period size: 6 Copynumber: 13.3 Consensus size: 6
18864372 AAATAGTACA
* * *
18864382 TTTATT TTTATT TTCATT TTCATT TTCATT TTTCATT TTTCATT TTTCATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT-ATT TTT-ATT TTT-ATT
*
18864433 TTTATT TATTTTAT TTTATT TTTATT TTTATT TT
1 TTTATT T-TTAT-T TTTATT TTTATT TTTATT TT
18864467 ATTATGCACT
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
6 44 0.61
7 26 0.36
8 2 0.03
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:18864416 original size:7 final size:7
Alignment explanation
Indices: 18864392--18864439 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
18864382 TTTATTTTTA
18864392 TTTTCA-
1 TTTTCAT
18864398 TTTTCA-
1 TTTTCAT
18864404 TTTTCAT
1 TTTTCAT
18864411 TTTTCAT
1 TTTTCAT
18864418 TTTTCAT
1 TTTTCAT
18864425 TTTTCAT
1 TTTTCAT
18864432 TTTT-AT
1 TTTTCAT
18864438 TT
1 TT
18864440 ATTTTATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 16 0.39
7 25 0.61
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTCAT
Found at i:18864442 original size:4 final size:5
Alignment explanation
Indices: 18864432--18864469 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
18864422 CATTTTTCAT
18864432 TTTTA -TTTA TTTTA TTTTA TTTTTA TTTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTTA TT
18864470 ATGCACTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
5 16 0.52
6 11 0.35
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:18864471 original size:14 final size:13
Alignment explanation
Indices: 18864382--18864471 Score: 71
Period size: 14 Copynumber: 6.9 Consensus size: 13
18864372 AAATAGTACA
18864382 TTTA-TTTTTATT
1 TTTATTTTTTATT
* *
18864394 TTCA-TTTTCATT
1 TTTATTTTTTATT
* *
18864406 TTCATTTTTCATT
1 TTTATTTTTTATT
*
18864419 TTTCATTTTTCATT
1 TTT-ATTTTTTATT
18864433 TTTATTTATTT-TAT
1 TTTATTT-TTTAT-T
18864447 TTTA-TTTTTATT
1 TTTATTTTTTATT
18864459 TTTATTTTATTAT
1 TTTATTTT-TTAT
18864472 GCACTATTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
12 22 0.33
13 21 0.31
14 24 0.36
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:18865454 original size:18 final size:17
Alignment explanation
Indices: 18865427--18865461 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18865417 AAAACAATTG
18865427 AGAAAAAAAGAGAAAAA
1 AGAAAAAAAGAGAAAAA
*
18865444 AGAAGAAAAAGATAAAAA
1 AGAA-AAAAAGAGAAAAA
18865462 TGTGTTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (17 bp):
AGAAAAAAAGAGAAAAA
Found at i:18866515 original size:23 final size:25
Alignment explanation
Indices: 18866489--18866534 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18866479 CCAATTAGGG
18866489 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
18866512 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
18866535 TGGATCAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:18867878 original size:215 final size:215
Alignment explanation
Indices: 18867500--18868247 Score: 858
Period size: 215 Copynumber: 3.5 Consensus size: 215
18867490 ACTGCATCAC
* * * *
18867500 CGAACATTCCATGGTCGGTAAATCACATCATTTGGTCTAAATAGTTTGT-ATTTTGTAAATATCT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
** * *
18867564 TTTTCTCTTTTGAATTAAAAA-TATATTTACGTGAGAATTGTTTCTCTCTT-AGTTCTTGGTCGA
66 TTTGGT-TCTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGA-TTCTTGGACGA
* ** *
18867627 ACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAC-TCTGAATTCTAAAATTATTTAAGA
128 ACTTCAGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTC-G-ATTCT-AAAGCATTCAAGA
**
18867691 CAATCCATTCCTTTCAG-AATTTTCT
190 TGATCCATTCCTTTCAGAAATTTTCT
* * * * *
18867716 CGAACATTCCATGCTTGGGAAATCATATCATTTAGTCTAAATAGTTTGTCATTTTTTAAACAGCT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* *
18867781 TTTGGTTCATGAATTAAAAACTTATTTACGTGAG-ATTGTTTCTCTCTTGATTCTTGGCCGAACT
66 TTTGGTTCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* * *
18867845 TCTGAACTTGTCAAAATTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGCATTCAAGATGAC
131 TCAGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGATT-C-TAAAGCATTCAAGATGAT
* * *
18867910 CCAATCATTTGAGAAATTTT-T
194 CCATTCCTTTCAGAAATTTTCT
* *
18867931 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
18867995 TTTGG-TCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTTTATATTG-TCTCTTGGACGAA
66 TTTGGTTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGAT-TCTTGGACGAA
* * * * * * *
18868058 CTTAAGAACTTGTCAAAGTTTAACGAGTTCTTTCAAAACTTCG-GT-TAAAGCATTCGAGATGAT
129 CTTCAGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGATTCTAAAGCATTCAAGATGAT
* * *
18868121 ACATTCC-TTCGGGCAATTTTC-
194 CCATTCCTTTC-AGAAATTTTCT
* ** * *
18868142 CGAACATTCCATTCTCGGGAAATCGTATCTTTTGGTCTAAATAGTTTGTCAATTTGTAAACAACT
1 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
18868207 TTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
66 TTTGGTTCTTGAATTAAAAACTTATTTACGTGAGAATTGTT
18868248 ACTGATATGA
Statistics
Matches: 458, Mismatches: 60, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
210 2 0.00
211 27 0.06
212 96 0.21
213 3 0.01
214 91 0.20
215 144 0.31
216 78 0.17
217 17 0.04
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
CGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTTCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
TCAGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGATTCTAAAGCATTCAAGATGATCC
ATTCCTTTCAGAAATTTTCT
Found at i:18871442 original size:302 final size:303
Alignment explanation
Indices: 18870833--18871741 Score: 1590
Period size: 302 Copynumber: 3.0 Consensus size: 303
18870823 GTGTCCCTCG
* *
18870833 TATGGATGATGATCCTTTGGTTACTACTAGTTGTAGGCAATATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
18870898 AATTCCAAAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
66 AATTCCAAAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
18870963 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
* * *
18871028 GTGTCATGTTATTGGTGTAGTTCAAAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAGC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
*
18871093 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTAACTCT
261 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
*
18871136 TATGGATGATGATCCTTTGGTTAATACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
*
18871201 AATTCCAAAATTTCATGGAAGGAATGGTTAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
66 AATTCCAAAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
18871266 TAGTTTGTCAATCCAAGGGG-GTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
* *
18871330 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGCTGTCTAATTCAATATCCAAC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
* * *
18871395 TAGGGAAGAAAGTAAGTATGAATTTGTGCCTTTTGTTGACACT
261 TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
* *
18871438 TATGGATGATGAT-CTTTAGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTT
1 TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
* * *
18871502 AATTCCAGAATTTCATGGAAGGAATGGTCAAGAGACTTATTATGATGGAAAAGTTAATAATAAAT
66 AATTCCAAAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
* * *
18871567 TATTTTGTCAATCCAAGGGGAGTTGGCCAAATGAAAGGAGGAATACAATTAAGCTATCACCTTTT
131 TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
18871632 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
196 GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
*
18871697 TAGAGAA-AATAGTAAGTATGAATTTGCGCCTTTTTTTGACTCT
261 TAGAGAAGAA-AGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
18871740 TA
1 TA
18871742 CTCTAGTGGG
Statistics
Matches: 575, Mismatches: 29, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
301 130 0.23
302 299 0.52
303 146 0.25
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (303 bp):
TATGGATGATGATCCTTTGGTTACTACTGGTTGTGGGCAATATTTTTAGCTAAATCAAAGTTTTC
AATTCCAAAATTTCATGGAAGGAATGGTCAAGAGACTTATTGTGATGGAAAAGTTAATCATAAAT
TAGTTTGTCAATCCAAGGGGAGTTGGCCAAACGAAAGGAGGAATACAATTGAGCTATCACCTTTT
GTGTAATGTTATTGGTGTAGTTCAGAAGATCATGAGAGTTTTCGATGTCCAATTCAATATCCAAC
TAGAGAAGAAAGTAAGTATGAATTTGCGCCTTTTGTTGACTCT
Found at i:18875282 original size:30 final size:29
Alignment explanation
Indices: 18875242--18875326 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 29
18875232 GAGGAATTTA
*
18875242 GGGATCAAAATTGAAATTTTTGGAAAAATT
1 GGGATTAAAATTG-AATTTTTGGAAAAATT
* * *
18875272 GGGATTAAAATCGAACTTTTGGAAAATTT
1 GGGATTAAAATTGAATTTTTGGAAAAATT
18875301 GAGG-TTGAAAATGTG-ATTTTTGGAAA
1 G-GGATT-AAAAT-TGAATTTTTGGAAA
18875327 TTTGAAGGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
29 17 0.37
30 28 0.61
31 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.34
Consensus pattern (29 bp):
GGGATTAAAATTGAATTTTTGGAAAAATT
Found at i:18875449 original size:29 final size:29
Alignment explanation
Indices: 18875288--18875633 Score: 201
Period size: 29 Copynumber: 11.9 Consensus size: 29
18875278 AAAATCGAAC
* * * *
18875288 TTTTGGAAAATTTGAGGTTGAAAATGTGAT
1 TTTTGG-AAGTTTGAGGGTAAAAATGTAAT
* *
18875318 TTTTGGAAATTTGAAGGT-AAAATGGTAAT
1 TTTTGGAAGTTTGAGGGTAAAAAT-GTAAT
* *
18875347 TTTTGGATGTTT-AGAGG-CAAAATGTTAAT
1 TTTTGGAAGTTTGAG-GGTAAAAATG-TAAT
*
18875376 TTTTGGATA-TTCGAGGGT-AAAATGGTAAT
1 TTTTGGA-AGTTTGAGGGTAAAAAT-GTAAT
* * * *
18875405 TTTTGGATGTTCGAGGATAAAAATGTGAT
1 TTTTGGAAGTTTGAGGGTAAAAATGTAAT
** *
18875434 TTTTGGAAGTTTGAGGACAAAAATGTGAT
1 TTTTGGAAGTTTGAGGGTAAAAATGTAAT
* * *
18875463 TTTTAAGAAGTTCGAGGGTAAAAATGTGAT
1 TTTT-GGAAGTTTGAGGGTAAAAATGTAAT
*
18875493 TTTT-GAAGTTT-AGGGGCAAAAATGTAAT
1 TTTTGGAAGTTTGA-GGGTAAAAATGTAAT
* ** * *
18875521 TTTT-AAAGTTCAAGTGTAGAAATGTAAT
1 TTTTGGAAGTTTGAGGGTAAAAATGTAAT
* *
18875549 TTTTGAGAAG-TTCAGGGGTAAAAATGTGAT
1 TTTTG-GAAGTTTGA-GGGTAAAAATGTAAT
* * * *
18875579 TTTTAGAAG-TTCAGGGGTTAAAATATAAT
1 TTTTGGAAGTTTGA-GGGTAAAAATGTAAT
* *
18875608 TTTAGAGAAGTTT-AGGGGTCAAAATG
1 TTTTG-GAAGTTTGA-GGGTAAAAATG
18875634 GGATTTTTAA
Statistics
Matches: 258, Mismatches: 40, Indels: 36
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.00
28 51 0.20
29 131 0.51
30 73 0.28
31 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
TTTTGGAAGTTTGAGGGTAAAAATGTAAT
Found at i:18875601 original size:30 final size:29
Alignment explanation
Indices: 18875422--18875642 Score: 207
Period size: 30 Copynumber: 7.6 Consensus size: 29
18875412 TGTTCGAGGA
* * *
18875422 TAAAAATGTGATTTTTGGAAGTT-TGAGGA
1 TAAAAATGTGATTTTTAGAAGTTCAG-GGG
*
18875451 CAAAAATGTGATTTTTAAGAAGTTC-GAGGG
1 TAAAAATGTGATTTTT-AGAAGTTCAG-GGG
*
18875481 TAAAAATGTGATTTTT-GAAGTTTAGGGG
1 TAAAAATGTGATTTTTAGAAGTTCAGGGG
* * * *
18875509 CAAAAATGTAATTTTTA-AAGTTCAAGTG
1 TAAAAATGTGATTTTTAGAAGTTCAGGGG
* *
18875537 TAGAAATGTAATTTTTGAGAAGTTCAGGGG
1 TAAAAATGTGATTTTT-AGAAGTTCAGGGG
18875567 TAAAAATGTGATTTTTAGAAGTTCAGGGG
1 TAAAAATGTGATTTTTAGAAGTTCAGGGG
* * * * *
18875596 TTAAAATATAATTTTAGAGAAGTTTAGGGG
1 TAAAAATGTGATTTT-TAGAAGTTCAGGGG
* *
18875626 TCAAAATGGGATTTTTA
1 TAAAAATGTGATTTTTA
18875643 AAGAAAACAA
Statistics
Matches: 159, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
28 45 0.28
29 43 0.27
30 71 0.45
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
TAAAAATGTGATTTTTAGAAGTTCAGGGG
Found at i:18875602 original size:145 final size:143
Alignment explanation
Indices: 18875303--18875641 Score: 307
Period size: 145 Copynumber: 2.3 Consensus size: 143
18875293 GAAAATTTGA
* * * * *
18875303 GGTTGAAAATGTGATTTTT-GGAAATTTGAAGGTAAAATGGTAATTTTTGGATGTTTAGAGGCAA
1 GGTT-AAAATGTGATTTTTAAG-AAGTTGAGGGTAAAAT-GTGATTTTTGGAAGTTTAGAGGCAA
* * *
18875367 AATGTTAATTTTTGGATATTCGAGGGTAAAATGGTAATTTTTGGATGTTCGAGGATAAAAATGTG
63 AATGTTAATTTTT-GAAATTCAAGGGTAAAATGGTAATTTTTGGAAGTTCGAGGATAAAAATGTG
* *
18875432 ATTTTTGGAAGTTTGAG
127 ATTTTTAGAAGTTAGAG
*** *
18875449 GACAAAAATGTGATTTTTAAGAAGTTCGAGGGTAAAAATGTGATTTTT-GAAGTTTAGGGGCAAA
1 GGTTAAAATGTGATTTTTAAGAAGTT-GAGGGT-AAAATGTGATTTTTGGAAGTTTAGAGGC-AA
* *
18875513 AATG-TAATTTTT-AAAGTTCAAGTGTAGAAAT-GTAATTTTTGAGAAGTTC-AGGGGTAAAAAT
63 AATGTTAATTTTTGAAA-TTCAAGGGTA-AAATGGTAATTTTTG-GAAGTTCGA-GGATAAAAAT
18875574 GTGATTTTTAGAAGTTCAG-G
124 GTGATTTTTAGAAGTT-AGAG
* * * *
18875594 GGTTAAAATAT-AATTTTAGAGAAGTTTAGGGGTCAAAATGGGATTTTT
1 GGTTAAAATGTGATTTTTA-AGAAGTTGA-GGGT-AAAATGTGATTTTT
18875642 AAAGAAAACA
Statistics
Matches: 158, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
143 2 0.01
144 26 0.16
145 103 0.65
146 22 0.14
147 5 0.03
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (143 bp):
GGTTAAAATGTGATTTTTAAGAAGTTGAGGGTAAAATGTGATTTTTGGAAGTTTAGAGGCAAAAT
GTTAATTTTTGAAATTCAAGGGTAAAATGGTAATTTTTGGAAGTTCGAGGATAAAAATGTGATTT
TTAGAAGTTAGAG
Found at i:18877879 original size:50 final size:49
Alignment explanation
Indices: 18877825--18878193 Score: 368
Period size: 50 Copynumber: 7.4 Consensus size: 49
18877815 CTAGGTTTGT
*
18877825 CGTTGCGACCTCAATCC-TTCCCATCACATCTTCTATGGTACCGGGTTCGC
1 CGTTGCGGCCTCAA-CCTTTCCCATCACATCTTCT-TGGTACCGGGTTCGC
* * * ** ***
18877875 CGTTGCGGCCTCAACCTTTCCCTTCATATC-TCTGTGGTATCGATTTTAT
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCT-TGGTACCGGGTTCGC
*
18877924 CGTTGCGGCCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGGGTTCGC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTT-GGTACCGGGTTCGC
* * ** ** * *
18877974 CGTTGTGACCTCAACCTTTCCTTTCGTATCTTCATGGTACTGGGTTCGC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTGGTACCGGGTTCGC
* * *
18878023 CGTTGCAGCCTCAACCTTTCCCATCACATCTTCTTAGGTACTGGATTCGC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTT-GGTACCGGGTTCGC
* * * *
18878073 CGTCGCGGCCTCAATCC-TTCCCTTCATC-TCTTCATGGTACTGGGTTCGC
1 CGTTGCGGCCTCAA-CCTTTCCCATCA-CATCTTCTTGGTACCGGGTTCGC
* * * *
18878122 CATTGCGGCTTCAACCTTTCTCATCACATCTTCTTAGGTACCGAGTTCGC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTT-GGTACCGGGTTCGC
*
18878172 CGTTGCGGCCTCCACCTTTCCC
1 CGTTGCGGCCTCAACCTTTCCC
18878194 TTTGTCAAAC
Statistics
Matches: 258, Mismatches: 52, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.01
49 119 0.46
50 133 0.52
51 3 0.01
ACGTcount: A:0.14, C:0.34, G:0.18, T:0.34
Consensus pattern (49 bp):
CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTGGTACCGGGTTCGC
Found at i:18877945 original size:99 final size:99
Alignment explanation
Indices: 18877825--18878195 Score: 464
Period size: 99 Copynumber: 3.7 Consensus size: 99
18877815 CTAGGTTTGT
*
18877825 CGTTGCGACCTCAATCC-TTCCCATCACATCTTC-TATGGTACCGGGTTCGCCGTTGCGGCCTCA
1 CGTTGCGGCCTCAA-CCTTTCCCATCACATCTTCTTA-GGTACCGGGTTCGCCGTTGCGGCCTCA
* ** ***
18877888 ACCTTTCCCTTCATATC-TCTGTGGTA-TCGATTTTAT
64 ACCTTTCCCTTCATATCTTC-ATGGTACT-GGGTTCGC
* * *
18877924 CGTTGCGGCCTCAACCTTTCCCATCGCATCTTCTTAGGTACCGGGTTCGCCGTTGTGACCTCAAC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCGGCCTCAAC
* *
18877989 CTTTCCTTTCGTATCTTCATGGTACTGGGTTCGC
66 CTTTCCCTTCATATCTTCATGGTACTGGGTTCGC
* * * *
18878023 CGTTGCAGCCTCAACCTTTCCCATCACATCTTCTTAGGTACTGGATTCGCCGTCGCGGCCTCAAT
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCGGCCTCAA-
*
18878088 CC-TTCCCTTCATCTCTTCATGGTACTGGGTTCGC
65 CCTTTCCCTTCATATCTTCATGGTACTGGGTTCGC
* * * * *
18878122 CATTGCGGCTTCAACCTTTCTCATCACATCTTCTTAGGTACCGAGTTCGCCGTTGCGGCCTCCAC
1 CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCGGCCTCAAC
18878187 CTTTCCCTT
66 CTTTCCCTT
18878196 TGTCAAACCT
Statistics
Matches: 235, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
98 4 0.02
99 224 0.95
100 7 0.03
ACGTcount: A:0.14, C:0.34, G:0.18, T:0.34
Consensus pattern (99 bp):
CGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCGGCCTCAAC
CTTTCCCTTCATATCTTCATGGTACTGGGTTCGC
Found at i:18878974 original size:40 final size:42
Alignment explanation
Indices: 18878902--18878982 Score: 130
Period size: 40 Copynumber: 2.0 Consensus size: 42
18878892 TTTGGTTTCA
* *
18878902 AGACGCCCTTTACGGGGTTTTCATCTCGATCTTTTT-TTTTG
1 AGACGCCCTTTACGAGGTTTTCATCTCAATCTTTTTATTTTG
18878943 AGACGCCCTTTAC-AGGTTTTCATCTCAATCTTTTTATTTT
1 AGACGCCCTTTACGAGGTTTTCATCTCAATCTTTTTATTTT
18878983 AGGTGAAGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 20 0.54
41 17 0.46
ACGTcount: A:0.16, C:0.22, G:0.15, T:0.47
Consensus pattern (42 bp):
AGACGCCCTTTACGAGGTTTTCATCTCAATCTTTTTATTTTG
Found at i:18886948 original size:30 final size:29
Alignment explanation
Indices: 18886770--18887164 Score: 243
Period size: 29 Copynumber: 13.5 Consensus size: 29
18886760 TTTGAGGTCG
* * *
18886770 AAAATGTGATTTTTAGAAATT-TGAGGGT-
1 AAAATGTAATTTTTAGAAGTTCAG-GGGTA
* * * *
18886798 AAAATGGTAATTTTAAGATGTTCAAGGG-C
1 AAAAT-GTAATTTTTAGAAGTTCAGGGGTA
*
18886827 AAAATGGTAATTTTTGGATA-TTC-GAGGGT-
1 AAAAT-GTAATTTTTAGA-AGTTCAG-GGGTA
* *
18886856 AAAATGGTAATTTTTGGATGTTC-GAGGGTA
1 AAAAT-GTAATTTTTAGAAGTTCAG-GGGTA
* * * * * *
18886886 AAAATTTGATTTTTGGAAGTTCAAGAGCA
1 AAAATGTAATTTTTAGAAGTTCAGGGGTA
* * *
18886915 AAAATGTAATTGTTAAAAAGTTCGGGGGTA
1 AAAATGTAATT-TTTAGAAGTTCAGGGGTA
*
18886945 AAAATGTGATTTTTAGAAGTTCAGGGGTA
1 AAAATGTAATTTTTAGAAGTTCAGGGGTA
* * * *
18886974 AAAATATAATTTTAAGAAGTTTAAGGGTA
1 AAAATGTAATTTTTAGAAGTTCAGGGGTA
* * *
18887003 AAAATATAATTTTTGGAAGTTTA-GGG-A
1 AAAATGTAATTTTTAGAAGTTCAGGGGTA
*
18887030 CAAAATGTAATTTTTTAGAAGTTTAGGGGTA
1 -AAAATGTAA-TTTTTAGAAGTTCAGGGGTA
* *
18887061 GAAATGTAATTTTTAAGAAGTT-TGAGGGTA
1 AAAATGTAATTTTT-AGAAGTTCAG-GGGTA
* * * *
18887091 AAAATGTGATTTTTGGAAGTTCGGGGGTC
1 AAAATGTAATTTTTAGAAGTTCAGGGGTA
* * * *
18887120 AGAATGTAATTTTAGAGAAGTTTAGGGGTC
1 AAAATGTAATTTT-TAGAAGTTCAGGGGTA
**
18887150 AAAATGGGATTTTTA
1 AAAATGTAATTTTTA
18887165 AAGAAAATAG
Statistics
Matches: 293, Mismatches: 56, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
27 1 0.00
28 16 0.05
29 191 0.65
30 84 0.29
31 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTAGAAGTTCAGGGGTA
Found at i:18887118 original size:59 final size:58
Alignment explanation
Indices: 18886770--18887164 Score: 252
Period size: 59 Copynumber: 6.8 Consensus size: 58
18886760 TTTGAGGTCG
* * * * * *
18886770 AAAATGTGATTTTTAGAAATTT-GAGGGT-AAAATGGTAATTTTAAGATGTTCAAGGG-C
1 AAAATGTAATTTTTAGAAGTTTAG-GGGTAAAAAT-GTAATTTTTAGAAGTTCAGGGGTA
* * * *
18886827 AAAATGGTAATTTTT-GGA-TATTCGAGGGT-AAAATGGTAATTTTTGGATGTTC-GAGGGTA
1 AAAAT-GTAATTTTTAGAAGT-TTAG-GGGTAAAAAT-GTAATTTTTAGAAGTTCAG-GGGTA
* * * * * * * * * *
18886886 AAAATTTGATTTTTGGAAGTTCAAGAGCAAAAATGTAATTGTTAAAAAGTTCGGGGGTA
1 AAAATGTAATTTTTAGAAGTTTAGGGGTAAAAATGTAATT-TTTAGAAGTTCAGGGGTA
* * * * * *
18886945 AAAATGTGATTTTTAGAAGTTCAGGGGTAAAAATATAATTTTAAGAAGTTTAAGGGTA
1 AAAATGTAATTTTTAGAAGTTTAGGGGTAAAAATGTAATTTTTAGAAGTTCAGGGGTA
* * *
18887003 AAAATATAATTTTTGGAAGTTTA-GGG-ACAAAATGTAATTTTTTAGAAGTTTAGGGGTA
1 AAAATGTAATTTTTAGAAGTTTAGGGGTA-AAAATGTAA-TTTTTAGAAGTTCAGGGGTA
* * * * *
18887061 GAAATGTAATTTTTAAGAAGTTT-GAGGGTAAAAATGTGATTTTTGGAAGTTCGGGGGTC
1 AAAATGTAATTTTT-AGAAGTTTAG-GGGTAAAAATGTAATTTTTAGAAGTTCAGGGGTA
* * * **
18887120 AGAATGTAATTTTAGAGAAGTTTAGGGGTCAAAATGGGATTTTTA
1 AAAATGTAATTTT-TAGAAGTTTAGGGGTAAAAATGTAATTTTTA
18887165 AAGAAAATAG
Statistics
Matches: 271, Mismatches: 49, Indels: 34
0.77 0.14 0.10
Matches are distributed among these distances:
56 2 0.01
57 20 0.07
58 116 0.43
59 118 0.44
60 14 0.05
61 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGTAATTTTTAGAAGTTTAGGGGTAAAAATGTAATTTTTAGAAGTTCAGGGGTA
Found at i:18888868 original size:17 final size:16
Alignment explanation
Indices: 18888837--18888895 Score: 63
Period size: 17 Copynumber: 3.8 Consensus size: 16
18888827 GAATATTCTT
*
18888837 TTTAAATTCAAATAAA
1 TTTAAATTAAAATAAA
18888853 TTTAAATTTAAAATAAA
1 TTTAAA-TTAAAATAAA
18888870 TTT--A--AAAATAAA
1 TTTAAATTAAAATAAA
18888882 TTTAAACTTAAAAT
1 TTTAAA-TTAAAAT
18888896 TGAGTTCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
12 11 0.31
14 1 0.03
15 1 0.03
16 6 0.17
17 17 0.47
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
TTTAAATTAAAATAAA
Found at i:18888877 original size:12 final size:12
Alignment explanation
Indices: 18888855--18888887 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
18888845 CAAATAAATT
18888855 TAAATTT-AAAA
1 TAAATTTAAAAA
18888866 TAAATTTAAAAA
1 TAAATTTAAAAA
18888878 TAAATTTAAA
1 TAAATTTAAA
18888888 CTTAAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAATTTAAAAA
Found at i:18896393 original size:23 final size:21
Alignment explanation
Indices: 18896367--18896409 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
18896357 CTACTTTTGT
18896367 AAATAATTTCGAGTGAGAAAATA
1 AAAT-ATTTCGAGT-AGAAAATA
*
18896390 AAATATTTTGAGTAGAAAAT
1 AAATATTTCGAGTAGAAAAT
18896410 TTGTTGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 8 0.42
23 4 0.21
ACGTcount: A:0.51, C:0.02, G:0.16, T:0.30
Consensus pattern (21 bp):
AAATATTTCGAGTAGAAAATA
Found at i:18898103 original size:15 final size:16
Alignment explanation
Indices: 18898085--18898114 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18898075 TGAATTTAAA
18898085 ATTAAAT-TAATTCTT
1 ATTAAATATAATTCTT
18898100 ATTAAATATAATTCT
1 ATTAAATATAATTCT
18898115 AAATGTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTAAATATAATTCTT
Found at i:18899144 original size:9 final size:9
Alignment explanation
Indices: 18899132--18899199 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
18899122 TTTTTATGCA
18899132 TTTTATAATT
1 TTTTATAA-T
*
18899142 TTTTATGAT
1 TTTTATAAT
*
18899151 TTTAATAAAT
1 TTTTAT-AAT
*
18899161 TTTTACAAT
1 TTTTATAAT
18899170 ATTTTAT-AT
1 -TTTTATAAT
*
18899179 TTTTACAAT
1 TTTTATAAT
*
18899188 CTTTATAAT
1 TTTTATAAT
18899197 TTT
1 TTT
18899200 GTTTTTAATT
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
8 5 0.11
9 22 0.49
10 18 0.40
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18899145 original size:19 final size:19
Alignment explanation
Indices: 18899121--18899165 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
18899111 TTAAAGGGTC
18899121 TTTTTTATGCATTTT-ATAA
1 TTTTTTATG-ATTTTAATAA
18899140 TTTTTTATGATTTTAATAA
1 TTTTTTATGATTTTAATAA
*
18899159 ATTTTTA
1 TTTTTTA
18899166 CAATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTTTATGATTTTAATAA
Found at i:18899165 original size:29 final size:27
Alignment explanation
Indices: 18899132--18899199 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
18899122 TTTTTATGCA
18899132 TTTTATAATTTTTTATGATTTTAATA-AAT
1 TTTTATAATTTTTTAT-ATTTT--TACAAT
* *
18899161 TTTTACAATATTTTATATTTTTACAAT
1 TTTTATAATTTTTTATATTTTTACAAT
*
18899188 CTTTATAATTTT
1 TTTTATAATTTT
18899200 GTTTTTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.36
28 5 0.15
29 14 0.42
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (27 bp):
TTTTATAATTTTTTATATTTTTACAAT
Found at i:18899250 original size:19 final size:19
Alignment explanation
Indices: 18899207--18899259 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
18899197 TTTGTTTTTA
* *
18899207 ATTTTTAATAAAATTAAAT
1 ATTTTTATTAAAATTTAAT
*
18899226 ACTTTTATTAAAATTTAAT
1 ATTTTTATTAAAATTTAAT
*
18899245 ATTTTT-TTATAATTT
1 ATTTTTATTAAAATTT
18899260 TTGCCACGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTATTAAAATTTAAT
Found at i:18902595 original size:33 final size:33
Alignment explanation
Indices: 18902558--18902637 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
18902548 TTGCCTCAAG
*
18902558 AGATGTTCAAATCATTGATGAAGCTACCCTGAT
1 AGATGTTCCAATCATTGATGAAGCTACCCTGAT
* *
18902591 AGATGTTCCAATAATTGATGAAGCTGCCCTGAT
1 AGATGTTCCAATCATTGATGAAGCTACCCTGAT
*
18902624 AGTTGTTCCAATCA
1 AGATGTTCCAATCA
18902638 CTTATGTTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (33 bp):
AGATGTTCCAATCATTGATGAAGCTACCCTGAT
Found at i:18917067 original size:15 final size:15
Alignment explanation
Indices: 18917016--18917080 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
18917006 GCTTGGAAGA
* *
18917016 TGCGAGCACTCATGT
1 TGCGAACACTAATGT
*
18917031 TGCGAACACTAGA-GC
1 TGCGAACACTA-ATGT
*
18917046 TGTGAACACTAATGT
1 TGCGAACACTAATGT
**
18917061 TGCGAACACTTGTGT
1 TGCGAACACTAATGT
18917076 TGCGA
1 TGCGA
18917081 GCATGGATGA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 1 0.03
15 38 0.95
16 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (15 bp):
TGCGAACACTAATGT
Found at i:18926857 original size:4 final size:4
Alignment explanation
Indices: 18926843--18926881 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
18926833 GTGCCCCAAT
* *
18926843 TTCA ATCA TTCA TTCA TTCA TTCA TTCA TTCA CTCA TTC
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTC
18926882 GCTCATTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (4 bp):
TTCA
Found at i:18928862 original size:20 final size:18
Alignment explanation
Indices: 18928832--18928880 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
18928822 TCCAAAAAAC
18928832 AAAAAAA-AAAGAAGAAA
1 AAAAAAAGAAAGAAGAAA
*
18928849 TAAGAAAAGCAAAGAAGAAA
1 -AAAAAAAG-AAAGAAGAAA
18928869 AAAAAAAGAAAG
1 AAAAAAAGAAAG
18928881 GAAATAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (18 bp):
AAAAAAAGAAAGAAGAAA
Found at i:18929915 original size:42 final size:42
Alignment explanation
Indices: 18929856--18930354 Score: 623
Period size: 42 Copynumber: 11.9 Consensus size: 42
18929846 AAGAAAAGCA
* *
18929856 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACAT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* * * *
18929898 TTCATTGCATTTAGAGGCCCAA-TTGTAGAGGTTCATTTACTT
1 TTCATCGCATTTAGAGG-CCAAGGTGTGGAGGTCCATTTACTT
* * * *
18929940 ATCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* **
18929982 TTCATCGCATTTAGAGGCCCAGGTGTGGAGGTTTATTTACTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* *
18930024 TTCATCGTATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* * *
18930066 TTCGTCGCATTTAGAGGCCTAGGTGAGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* * *
18930108 TT-ATTGCATTTAGAGGCCCAA-GTATGGAGATCCATTTACTT
1 TTCATCGCATTTAGAGG-CCAAGGTGTGGAGGTCCATTTACTT
* *
18930149 TCCATCGCATTTAAAGGCCCAA-GTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGG-CCAAGGTGTGGAGGTCCATTTACTT
* *
18930191 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCACTTACTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
* *
18930233 TTCATCGCATTTAGAGGCCCAA-GTGTGGAGGCCCATTTAATT
1 TTCATCGCATTTAGAGG-CCAAGGTGTGGAGGTCCATTTACTT
*
18930275 TTCATCGCATTTAAAGGCCTAA-GTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCC-AAGGTGTGGAGGTCCATTTACTT
* * * *
18930317 TTCATTGCATTTAGAGGCCTAGGCGTAGAGGTCCATTT
1 TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTT
18930355 GTTTTTTTAT
Statistics
Matches: 400, Mismatches: 49, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
41 40 0.10
42 352 0.88
43 8 0.02
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (42 bp):
TTCATCGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTT
Found at i:18930081 original size:126 final size:126
Alignment explanation
Indices: 18929856--18930354 Score: 696
Period size: 126 Copynumber: 4.0 Consensus size: 126
18929846 AAGAAAAGCA
* * * *
18929856 TTCATTGCATTTAGAGG-CCAAGGTGTGGAGGTCCATTTACATTTCATTGCATTTAGAGGCCCAA
1 TTCATCGCATTTAGAGGCCCAA-GTGTGGAGGTCCATTTACTTTTCATCGCATTTAAAGGCCCAA
* * * * * *
18929920 TTGTAGAGGTTCATTTACTTATCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
65 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* ** * * * *
18929982 TTCATCGCATTTAGAGGCCCAGGTGTGGAGGTTTATTTACTTTTCATCGTATTTAGAGGCCTAGG
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATCGCATTTAAAGGCCCAAG
* * *
18930047 TGTGGAGGTCCATTTACTTTTCGTCGCATTTAGAGGCCTAGGTGAGGAGGTCCATTTACTT
66 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
18930108 TT-ATTGCATTTAGAGGCCCAAGTATGGAGATCCATTTACTTTCCATCGCATTTAAAGGCCCAAG
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATCGCATTTAAAGGCCCAAG
* *
18930172 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCACTTACTT
66 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
18930233 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTAATTTTCATCGCATTTAAAGGCCTAAG
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATCGCATTTAAAGGCCCAAG
* *
18930298 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGCGTAGAGGTCCATTT
66 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTT
18930355 GTTTTTTTAT
Statistics
Matches: 326, Mismatches: 45, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
125 109 0.33
126 214 0.66
127 3 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (126 bp):
TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATCGCATTTAAAGGCCCAAG
TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:18930808 original size:3 final size:3
Alignment explanation
Indices: 18930800--18930833 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
18930790 AAGGGCCTAA
* *
18930800 ATT ATT ATT ATC AAT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
18930834 GGGTTTCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:18931299 original size:50 final size:50
Alignment explanation
Indices: 18931235--18931402 Score: 164
Period size: 50 Copynumber: 3.4 Consensus size: 50
18931225 TTTTAAAAGA
*
18931235 AAAAGTTTAAATTTTTAAACAAAATTTGATTTTTTTAACTATTTCAAAAT
1 AAAAGTTTTAATTTTTAAACAAAATTTGATTTTTTTAACTATTTCAAAAT
* * * ** * *
18931285 ACAAGTTTTTATTTTTAAAAATAAAAAT-A-TTTTTTAGGC-ATTTTAGAAGA-
1 AAAAGTTTTAATTTTTAAACA-AAATTTGATTTTTTTA-ACTATTTCA-AA-AT
* * *
18931335 AAAAGTTTAAATTTTTAAACAAAGTTAGATTTTTTTAACTATTTCAAAAT
1 AAAAGTTTTAATTTTTAAACAAAATTTGATTTTTTTAACTATTTCAAAAT
*
18931385 AAAAGTTTTGATTTTTAA
1 AAAAGTTTTAATTTTTAA
18931403 GTAAAGTAGT
Statistics
Matches: 90, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
49 15 0.17
50 58 0.64
51 17 0.19
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (50 bp):
AAAAGTTTTAATTTTTAAACAAAATTTGATTTTTTTAACTATTTCAAAAT
Found at i:18931337 original size:100 final size:101
Alignment explanation
Indices: 18931192--18931402 Score: 343
Period size: 100 Copynumber: 2.1 Consensus size: 101
18931182 GGAAAGTTCA
*
18931192 GATTTTTAAAAATAAAAATCTGTTTTTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAA
1 GATTTTTAAAAATAAAAA-CTATTTTTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAA
* *
18931257 AATTTGATTTTTTTAACTATTTCAAAATACAAGTTTT
65 AATTAGATTTTTTTAACTATTTCAAAATAAAAGTTTT
* * *
18931294 TATTTTTAAAAATAAAAA-TATTTTTTAGGCATTTTAGAAGAAAAAGTTTAAATTTTTAAACAAA
1 GATTTTTAAAAATAAAAACTATTTTTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAAA
*
18931358 GTTAGATTTTTTTAACTATTTCAAAATAAAAGTTTT
66 ATTAGATTTTTTTAACTATTTCAAAATAAAAGTTTT
18931394 GATTTTTAA
1 GATTTTTAA
18931403 GTAAAGTAGT
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
100 84 0.83
102 17 0.17
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.45
Consensus pattern (101 bp):
GATTTTTAAAAATAAAAACTATTTTTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAAA
ATTAGATTTTTTTAACTATTTCAAAATAAAAGTTTT
Found at i:18931496 original size:156 final size:155
Alignment explanation
Indices: 18931287--18931584 Score: 431
Period size: 157 Copynumber: 1.9 Consensus size: 155
18931277 TTCAAAATAC
* * *
18931287 AAGTTTTTATTTTTAAAAATAAAAATATTTTTTAGGCATTTTAGAAGAAAAAGTTTAAATTTTTA
1 AAGTTTATATTTTTAAAAATAAAAAAATGTTTTAGGCATTTTAGAAGAAAAAGTTTAAATTTTTA
* * **
18931352 AAC-AAAGTTAGA-TTTTTTTAACTATTTCAAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGA
66 AACAAAAGTTA-ATTTTTTTTAACTATTTCAAAATAAAAATTTTGATTTTTAAGAAAAACAGTGA
18931415 TCTTTTTTTAAAAAAAAAAAAGAAGA
130 TCTTTTTTTAAAAAAAAAAAAGAAGA
*
18931441 AAGTTTATATTTTTAAAAATAAAAAAACTGGTTTTAGTCATTTTA-AAGAGAAAAGTTTAAATTT
1 AAGTTTATATTTTTAAAAATAAAAAAA-T-GTTTTAGGCATTTTAGAAGA-AAAAGTTTAAATTT
* **
18931505 TTAAACAAAATTTAATTTTTTTTAACTATTTTGAAATAAAAATTTTGATTTTTAAGAAAAACAGT
63 TTAAACAAAAGTTAATTTTTTTTAACTATTTCAAAATAAAAATTTTGATTTTTAAGAAAAACAGT
*
18931570 GATTTTTTTTTAAAA
128 GATCTTTTTTTAAAA
18931585 GAGAACTTTA
Statistics
Matches: 127, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
154 25 0.20
155 5 0.04
156 34 0.27
157 63 0.50
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.43
Consensus pattern (155 bp):
AAGTTTATATTTTTAAAAATAAAAAAATGTTTTAGGCATTTTAGAAGAAAAAGTTTAAATTTTTA
AACAAAAGTTAATTTTTTTTAACTATTTCAAAATAAAAATTTTGATTTTTAAGAAAAACAGTGAT
CTTTTTTTAAAAAAAAAAAAGAAGA
Found at i:18932146 original size:10 final size:10
Alignment explanation
Indices: 18932131--18932189 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
18932121 CACTTGTATA
18932131 ATTTTTATTT
1 ATTTTTATTT
18932141 ATTTTTATTTT
1 ATTTTTA-TTT
**
18932152 ATCCTTATTT
1 ATTTTTATTT
*
18932162 ATTTTCATGTCT
1 ATTTTTAT-T-T
*
18932174 ATTTATATTT
1 ATTTTTATTT
18932184 ATTTTT
1 ATTTTT
18932190 TTACATATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
10 21 0.55
11 10 0.26
12 7 0.18
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:18934652 original size:19 final size:19
Alignment explanation
Indices: 18934628--18934672 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
18934618 TTAAATAGCC
18934628 TTTTTTATGCATTTT-ATAA
1 TTTTTTATG-ATTTTAATAA
18934647 TTTTTTATGATTTTAATAA
1 TTTTTTATGATTTTAATAA
*
18934666 ATTTTTA
1 TTTTTTA
18934673 CAACATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTTTATGATTTTAATAA
Found at i:18934705 original size:18 final size:18
Alignment explanation
Indices: 18934664--18934728 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
18934654 TGATTTTAAT
*
18934664 AAATTTTTACAACATTTT
1 AAATTTTTACAACATTTA
*
18934682 ATATTTTTACAATC-TTTA
1 AAATTTTTACAA-CATTTA
* *
18934700 AAATTTTTAATAAAATTTA
1 AAATTTTT-ACAACATTTA
18934719 AATATTTTTA
1 AA-ATTTTTA
18934729 TTAAAATTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 21 0.55
19 11 0.29
20 6 0.16
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (18 bp):
AAATTTTTACAACATTTA
Found at i:18934718 original size:19 final size:20
Alignment explanation
Indices: 18934696--18934739 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
18934686 TTTTACAATC
18934696 TTTAAA-ATTTTTAATAAAA
1 TTTAAATATTTTTAATAAAA
*
18934715 TTTAAATATTTTTATTAAAA
1 TTTAAATATTTTTAATAAAA
18934735 TTTAA
1 TTTAA
18934740 TTAACTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTAAATATTTTTAATAAAA
Found at i:18939501 original size:36 final size:36
Alignment explanation
Indices: 18939459--18939562 Score: 181
Period size: 36 Copynumber: 2.9 Consensus size: 36
18939449 TGGTAACAAG
*
18939459 CATGACCTTTGGGTCAACAGGGAGAAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
18939495 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
* *
18939531 CATGACCTTCGGGTCAATAGGGAGTAAAATGA
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGA
18939563 TGAAGTACAG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (36 bp):
CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
Found at i:18940216 original size:21 final size:22
Alignment explanation
Indices: 18940192--18940240 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
18940182 AAAGCATGAT
* *
18940192 TTGTTTCGGTAGAAG-CTTCAC
1 TTGTTTCGATAGAAGTCTACAC
*
18940213 TTGTATCGATAGAAGTCTACAC
1 TTGTTTCGATAGAAGTCTACAC
18940235 -TGTTTC
1 TTGTTTC
18940241 ATGAATTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (22 bp):
TTGTTTCGATAGAAGTCTACAC
Found at i:18942911 original size:3 final size:3
Alignment explanation
Indices: 18942905--18942930 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18942895 TCTTCGTCTT
18942905 CTC CTC CTC CTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CT
18942931 TCCGATCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
CTC
Found at i:18943124 original size:20 final size:20
Alignment explanation
Indices: 18943095--18943134 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18943085 TGAACTGGTA
*
18943095 GAATCTTAGTTATTTGCTTT
1 GAATCATAGTTATTTGCTTT
18943115 GAATCATAGTTATTTGCTTT
1 GAATCATAGTTATTTGCTTT
18943135 ACTTATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.53
Consensus pattern (20 bp):
GAATCATAGTTATTTGCTTT
Found at i:18961614 original size:18 final size:18
Alignment explanation
Indices: 18961588--18961624 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18961578 TTTTTTTTTC
* *
18961588 TTCATTCTTGATTTCTTT
1 TTCAATCTTGATCTCTTT
18961606 TTCAATCTTGATCTCTTT
1 TTCAATCTTGATCTCTTT
18961624 T
1 T
18961625 CTCACACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.19, G:0.05, T:0.62
Consensus pattern (18 bp):
TTCAATCTTGATCTCTTT
Found at i:18961752 original size:16 final size:18
Alignment explanation
Indices: 18961728--18961768 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
18961718 CAACTCTTGT
18961728 TTTTC-TTTTCTCTCA-A
1 TTTTCTTTTTCTCTCAGA
*
18961744 -TTTCTTTTTGTCTCAGA
1 TTTTCTTTTTCTCTCAGA
18961761 TTTTCTTT
1 TTTTCTTT
18961769 ACAAGATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 4 0.19
16 9 0.43
17 1 0.05
18 7 0.33
ACGTcount: A:0.10, C:0.20, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTCTTTTTCTCTCAGA
Found at i:18963461 original size:431 final size:432
Alignment explanation
Indices: 18962420--18966970 Score: 5151
Period size: 431 Copynumber: 10.6 Consensus size: 432
18962410 GTTCGGTTAG
* * * *
18962420 GAACCGAGTGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
** * * *
18962485 AAATGACAAACTATTTAGACCAAACGATGTGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTA
* * * *
18962550 GAAGGAATGGATCGCCTTGAATGCTTTAAGGAACTGAAGCTATAAAAGAACTCGTAAAAGTTTGA
131 GAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * *
18962615 CAAGTTCGAAAGTTCGTTCAAGAACCAAGAGTGAAACAATTCTCACGTGAATAAGTTTTTAATTC
196 CAAGTTCGAAAGTTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
18962680 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAACGATGTGATTTCCCGAG-AA
260 AAAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAA
* *
18962744 TGGAATGTTCGAAAAATTGCTAGAAG--A---ATA--CTT---TA---T--GGAACCAAAGTTAT
325 TAGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
18962794 AAAAGAACTCTTAAAAGTTTGACAAGTTCGGAAGTTC-GACCAA
390 AAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAG-CCAA
18962837 GAACCAAGTA-A-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
1 GAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * *
18962900 AAAATGACAAACTATTTAGATCAAATTATGCAATTTCCCGATCATGGAATGTTCGTAAAATTCCT
65 AAAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
* * * *
18962965 CGAA-AGGATGGATCGTCTTGAATACTTTATGGAA-TCGAAGTTATAAAAGAACTCTTAAAAGTT
130 AGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTT
* * * *
18963028 TGACAAGTTCGAAAGTTCAGCCAAGAACCGAGTGAGCAACAATTCTCACGTAAATAAGTTTTTAG
193 TGACAAGTTCGAAAGTTC-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* ** * * *
18963093 TTCAAAGATCGAAAGTTGTTTATTAAATGACAAACTATTTAGACCAAACGATGCGACTTCTCGA-
257 TTCAAAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* *
18963157 CAATAGAATGTTTGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTATGGAACCGAAGT
322 CAATAGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGT
* *
18963222 TATAAAAGAACTCGTAAAAATTTGACAAGTTTGGAAGTTCGGCCAA
387 TATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
* * *
18963268 GAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTTAAAGACCAAAACTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
18963333 AAATGAAAAACTATTTAGAGCTAATAATTG-GATTTCCCGAGCCT-AAATGTTCAAAAAATTGCT
66 AAATGACAAACTATTTAGACCAAATAA-TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
* *
18963396 AGAAGAAATGGATCATCTTGAATACTTTAAGTAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * *
18963461 ACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAA-TCACACATAAATAAGATTTTAATT
195 ACAAGTTCGAAAGTTC-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *
18963525 CAAAGACCATAAGTTGTTTACAAAATTACAAA-TAATTTAGACCAAATGATGCGATTTCCCAAGC
259 CAAAGATCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * * *
18963589 ATTA-AATGTTCGGAAAATTTCTTGAA-AGAATGGATCGTC--GAAAACTTTAAGGAACCAAAGT
323 AATAGAATGTTCGAAAAATTGCTAGAAGA-AATGGATAGTCTTGAATACTTTAAGGAACCGAAGT
* * *
18963650 TATAAAACAACACGTAAAAGTTTGACAAGTTTGGAAGTTCAACCAA
387 TATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
* * *
18963696 GAACCAAGAGAGAAACAATTATCACATAAATAAGTTTTTAATTCAACGACCAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * *
18963761 AAATGATAAAACTTTTTAGACCAAATTATGCGATTTCCCAAGCATGGAATGTTCGTAAAATTGCT
66 AAATGA-CAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
* * *
18963826 AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAATTAGTAAAAGTTTG
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * *
18963891 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAAT
195 ACAAGTTCGAAAGTTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * *
18963956 CAAAG-TCCAAAAGTTGTTTACAAAATGACAAACTATTTAGACTAAATGATGCGTTTTCCTGAGC
259 CAAAGAT-CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * * * * *
18964020 -ATGGAATGTTCAAAAAATTACTCGAAGGAATGAATCGTCTTGAATACTGTAAGGGACCGAAGTT
323 AATAGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTT
* **** **
18964084 ATAAATGAACTCGTAAAAGTTTGACAAGTCCAAAAGTTCCTCCAA
388 ATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
* * *
18964129 GAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAAAGTTGTTTAC
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTAC
* * * * *
18964194 AAAATGACAAACAATTTAGACCAAATGATGCAATTTCGCGAACATGGAATGTTCGAAAAATTGCT
65 AAAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
* * ** * * *
18964259 CGAAGGAATCTATCGTCTTAAAAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTT
130 AGAAGAAATGGATCGTCTT--GAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT
* * * ** * * *
18964324 TGACAAGCTCGGAAGTACGTCCAAGAACCAAGAGAGAAACAATTCTCTTGGAAATAAGCTTTTAG
193 TGACAAGTTCGAAAGTTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * ** *
18964389 TTCAAAGACCGAAAGTTGTTTACGAAATAACAAACTATTTAGACCAAACAATGCGATTTCTCGAG
257 TTCAAAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * * *
18964454 -AATAGAATGTTCGGAAAATTTC-ACAAGAAATGGATAGTCTTGAATACTTTAAGGAATCGAAGT
322 CAATAGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGT
*
18964517 TATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTC-GACCAA
387 TATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAG-CCAA
* *
18964563 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
18964628 AAACGACAAACTATTTAGACCTAATAATTCGATTTCCCAAG-ACTTGAATGTTCAAAAAATTGCT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAATTGCT
* * * * * * *
18964692 AGAATG-AATGGATGCGAT-TTCCCAAGACTTTAAGTAACCGGAGTTACAAAAGAACTTGTAAAA
130 AGAA-GAAATGGAT-CG-TCTT--GAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAA
* * * *
18964755 GTTTGACAGGTTCGAAAGTTTGGCCAAGAACCAAGAGAGAAAC-AGT-TCAC--ACAT-A-----
190 GTTTGACAAGTTCGAAAG-TTCGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
18964810 -AA--C------CATAAGTTGTTGACAAAATTACAAA-TAATTGAGACCAAATGATGTGATTTCC
254 TAATTCAAAGATCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCC
* * * * * * * *
18964865 CAAGC-ATTGAATGTTTGAAAAATTTCTCGAA-AGAATGGATCGTCTTGAAAACTTTAAGGAATC
318 CGAGCAATAGAATGTTCGAAAAATTGCTAGAAGA-AATGGATAGTCTTGAATACTTTAAGGAACC
*
18964928 GAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
382 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
* *
18964979 GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
18965044 AAATGACAAACTATTTAGACCAAATGATGCGATCTCCCGAAGCATGGAATGTTCGTAAAATTGCT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCG-AGCATGGAATGTTCGAAAAATTGCT
* * * * * * *
18965109 CA-AAGGAATGGATCGTCTTGAATACTTTAAGTAACCGAAATTATAATAGAATTTGTAAAAGTTT
130 -AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTT
* *
18965173 GACAAGTTCGAAAGTTCATCCAAGAACC-A-AGAGAAACAATTCTTACGTAAATAAGTTTTTAAT
194 GACAAGTTCGAAAGTTC-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * ** *
18965236 TCAAAG-TCCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGCTTTCCTAAT
258 TCAAAGAT-CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * * *
18965300 C-ATGGAATGTTCGAAAAA-TGTCTCA-AAGGAATCGACTA-TCTTGAATACTTTAAGGAACCAA
322 CAATAGAATGTTCGAAAAATTG-CT-AGAAGAAATGGA-TAGTCTTGAATACTTTAAGGAACCGA
* * * * *
18965361 AGTTATGAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTAC-GTCCAA
384 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAG-CCAA
* * * * ** *
18965410 GAACCAAGGGAGAAACAATTCTCATGTTAATAAGTTTTTAGTTCAAAGACTGAAAGTTGTTTACG
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
18965475 AAATGTCAAACTATTTAGACTAAACAATGCGATTTCCCGAGAATAGAATGTTC-AGAAAATTGAT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCT
* * * *
18965539 AGAAGAAATGGATCATCTTGAATACTTTATGGAACTGAAGTTATAATAGAACTCATAAAAGTTTG
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * *
18965604 AAAAGTTTGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTTTTACGTAAATAAGTTTTTAATT
195 ACAAGTTCGAAAGTTC-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * *
18965669 TATAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-A
259 CAAAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * **
18965733 ATAGAATGTTCAAAAAAATT-ATAGAAGAAATGGATAGTCTTGAATACTTTATGGAACTAAAGTT
324 ATAGAATGTTC-GAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTT
* * *
18965797 ATAATAGAACTCGTGAAAGTTTGAAAAGTTTGGAAGTTCAGCCAA
388 ATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
*
18965842 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-ATAGACCAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * *
18965906 AAATGACAAACTATTTAGACCTAATAATTCGATTACCTGAGCCTTGAATGTTC-AAAATATTGCT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAA-ATTGCT
* *
18965970 AGAAGAAATGGATCGTCTTGAATACTATAAGTAACCT-AAGTTATAAAAGAACTCGTAAAAGTTT
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAA-CTGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
18966034 GGCAAGTTCGAAAGTGCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAGC
194 GACAAGTTCGAAAGTTC-GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA-A
* * ** * * * *
18966099 TT-AAAGACCGAAAGTTGTTTATGAAATGACGAACTATTTAGACCAAATGATACGATTTCCCAAT
257 TTCAAAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * * * * * *
18966163 C-ATTGAATGTTCAAAAAATTTCTCGGAAG-AATGGATAATTTTGAAAACTTTAAGGAACCGAAG
322 CAATAGAATGTTCGAAAAATTGCT-AGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAG
* * * *
18966226 TTATAAAAGAACACATAAAAGCTTGACAAGTTTGGAAGCTCAGCCAA
386 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
* * * * *
18966273 GAGCTAAGAGAGAAACAATTCTCACGTAAATAAGTTCTTAATTCAAAGGCCAAAAGTTGTTTGCA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * *
18966338 AAATGATAAAACTTTTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGTAAAATTGCT
66 AAATGA-CAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT
* * * * * *
18966403 CGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAATTCATAAAAGTTTG
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * *
18966468 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTAAATAAGTTTTTAATT
195 ACAAGTTCGAAAGTTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *
18966533 CAAAG-TCCAAAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATACGCTTTCTCGAGC
259 CAAAGAT-CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * *
18966597 -ATGGAATGTTCGAAAAGTTGCTCGAAGGAATGAATCGTCTTGAATACTTTAAGGAACCGAAGTT
323 AATAGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTT
* * * *** **
18966661 ATAAAAGAACACGTAAAATTTTAACAAGTCCAGAAGTTCCTCCAA
388 ATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
*
18966706 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * * *
18966771 AAATGGCAAAATATTTAGACCAAATGATGTGATTTCCCGAGCCTTGG-TTGTTCAAAAAATTGCT
66 AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAG-CATGGAATGTTCGAAAAATTGCT
* * * * *
18966835 AGAAGAAATGAATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAATGAACTCGTAATAGTTTG
130 AGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * *
18966900 ACAAGTTCAAAAGTACGTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATAATTTTTTAGTT
195 ACAAGTTCGAAAGTTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
*
18966965 TAAAGA
259 CAAAGA
18966971 ACTCGCATTG
Statistics
Matches: 3494, Mismatches: 526, Indels: 212
0.83 0.12 0.05
Matches are distributed among these distances:
412 8 0.00
413 5 0.00
414 64 0.02
415 64 0.02
416 475 0.14
417 40 0.01
418 3 0.00
421 4 0.00
423 6 0.00
425 1 0.00
426 2 0.00
428 127 0.04
429 35 0.01
430 326 0.09
431 847 0.24
432 498 0.14
433 604 0.17
434 216 0.06
435 169 0.05
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (432 bp):
GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
AAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTA
GAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGA
CAAGTTCGAAAGTTCGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGATCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAAT
AGAATGTTCGAAAAATTGCTAGAAGAAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATA
AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAA
Found at i:18963463 original size:215 final size:215
Alignment explanation
Indices: 18962769--18964798 Score: 2421
Period size: 215 Copynumber: 9.4 Consensus size: 215
18962759 ATTGCTAGAA
* * * *
18962769 GAATACTTTATGGAACCAAAGTTATAAAAGAACTCTTAAAAGTTTGACAAGTTCGGAAGTTCGAC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
18962834 CAAGAACCAAGTA-A-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
66 CAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
18962897 TACAAAATGACAAACTATTTAGATCAAATTATGCAATTTCCCGATCATGGAATGTTCGTAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAATGTTCGAAAAATT
* * *
18962962 CCTCGAA-AGGATGGATCGTCTT
194 GCTAGAAGA-AATGGATCGTCTT
* * * * *
18962984 GAATACTTTATGGAATCGAAGTTATAAAAGAACTCTTAAAAGTTTGACAAGTTCGAAAGTTCAGC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * * * * *
18963049 CAAGAACCGAGTGAGCAACAATTCTCACGTAAATAAGTTTTTAGTTCAAAGATCGAAAGTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
** * * * *
18963114 ATTAAATGACAAACTATTTAGACCAAACGATGCGACTTCTCGA-CAATAGAATGTTTGAAAAATT
131 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-AT-GAATGTTCGAAAAATT
*
18963178 GCTAGAAGAAATGGATAGTCTT
194 GCTAGAAGAAATGGATCGTCTT
* * *
18963200 GAATACTTTATGGAACCGAAGTTATAAAAGAACTCGTAAAAATTTGACAAGTTTGGAAGTTCGGC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * *
18963265 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTTAAAGACCAAAACTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
18963330 ACAAAATGAAAAACTATTTAGAGCTAATAATTG-GATTTCCCGAGCCTAAATGTTCAAAAAATTG
131 ACAAAATGACAAACTATTTAGACCAAATGA-TGCGATTTCCCGAGCATGAATGTTCGAAAAATTG
*
18963394 CTAGAAGAAATGGATCATCTT
195 CTAGAAGAAATGGATCGTCTT
* *
18963415 GAATACTTTAAGTAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * * *
18963480 CAAGAACCAAGAGAGAAACAA-TCACACATAAATAAGATTTTAATTCAAAGACCATAAGTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * *
18963544 ACAAAATTACAAA-TAATTTAGACCAAATGATGCGATTTCCCAAGCATTAAATGTTCGGAAAATT
131 ACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGCA-TGAATGTTCGAAAAATT
* *
18963608 TCTTGAA-AGAATGGATCGTC--
194 GCTAGAAGA-AATGGATCGTCTT
* * * * * **
18963628 GAAAACTTTAAGGAACCAAAGTTATAAAACAACACGTAAAAGTTTGACAAGTTTGGAAGTTCAAC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * *
18963693 CAAGAACCAAGAGAGAAACAATTATCACATAAATAAGTTTTTAATTCAACGACCAAAAGTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
18963758 ACAAAATGATAAAACTTTTTAGACCAAATTATGCGATTTCCCAAGCATGGAATGTTCGTAAAATT
131 ACAAAATGA-CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAATGTTCGAAAAATT
*
18963823 GCTAGAAGGAATGGATCGTCTT
194 GCTAGAAGAAATGGATCGTCTT
* * * *
18963845 GAATACTTTAAGGAACTGAAGTTATAAAAGAATTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * *
18963910 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAATCAAAGTCCAAAAGTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
18963975 ACAAAATGACAAACTATTTAGACTAAATGATGCGTTTTCCTGAGCATGGAATGTTCAAAAAATTA
131 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAATGTTCGAAAAATTG
* * *
18964040 CTCGAAGGAATGAATCGTCTT
195 CTAGAAGAAATGGATCGTCTT
* * * * ** **
18964061 GAATACTGTAAGGGACCGAAGTTATAAATGAACTCGTAAAAGTTTGACAAGTCCAAAAGTTCCTC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* * *
18964126 CAAGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAAAGTTGTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTT
* * * *
18964191 TACAAAATGACAAACAATTTAGACCAAATGATGCAATTTCGCGAACATGGAATGTTCGAAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAATGTTCGAAAAATT
* * **
18964256 GCTCGAAGGAATCTATCGTCTT
194 GCTAGAAGAAATGGATCGTCTT
* * * *
18964278 AAAAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGACAAGCTCGGAAGTACG
1 --GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* ** * * * *
18964343 TCCAAGAACCAAGAGAGAAACAATTCTCTTGGAAATAAGCTTTTAGTTCAAAGACCGAAAGTTGT
64 GCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * ** * * *
18964408 TTACGAAATAACAAACTATTTAGACCAAACAATGCGATTTCTCGAGAATAGAATGTTCGGAAAAT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-GAATGTTCGAAAAAT
* * *
18964473 TTC-ACAAGAAATGGATAGTCTT
193 TGCTAGAAGAAATGGATCGTCTT
* * * *
18964495 GAATACTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGAC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
* *
18964560 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTT
66 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
18964625 ACAAAACGACAAACTATTTAGACCTAATAATTCGATTTCCCAAGACTTGAATGTTCAAAAAATTG
131 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGAATGTTCGAAAAATTG
18964690 CTAGAATG-AATGGATGCGAT-TT
195 CTAGAA-GAAATGGAT-CG-TCTT
* * * * * * * * *
18964712 CCCAAGACTTTAAGTAACCGGAGTTACAAAAGAACTTGTAAAAGTTTGACAGGTTCGAAAGTTTG
1 --GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
18964777 GCCAAGAACCAAGAGAGAAACA
64 GCCAAGAACCAAGAGAGAAACA
18964799 GTTCACACAT
Statistics
Matches: 1550, Mismatches: 238, Indels: 50
0.84 0.13 0.03
Matches are distributed among these distances:
213 80 0.05
214 118 0.08
215 443 0.29
216 440 0.28
217 230 0.15
218 65 0.04
219 174 0.11
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGC
CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAATGTTCGAAAAATTGC
TAGAAGAAATGGATCGTCTT
Found at i:18965279 original size:215 final size:216
Alignment explanation
Indices: 18964811--18966970 Score: 2530
Period size: 216 Copynumber: 10.0 Consensus size: 216
18964801 TCACACATAA
* * * * * * *
18964811 ACCATAAGTTGTTGACAAAATTACAAA-TAATTGAGACCAAATGATGTGATTTCCCAAGCATTGA
1 ACCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
18964875 ATGTTTGAAAAATTTCTCGAAAGAATGGATCGTCTTGAAAACTTTAAGGAATCGAAGTTATAAAA
65 ATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
18964940 GAACACGTAAAAGTTTGACAAGTTTGGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCATG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
18965005 TAAATAAGTTTTTAATTCAAAG
195 TAAATAAGTTTTTAATTCAAAG
* *
18965027 ACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATCTCCCGAAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG-AGCATGGA
* * * *
18965092 ATGTTCGTAAAATTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGTAACCGAAATTATAAT
65 ATGTTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * ** *
18965156 AGAATTTGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACC-A-AGAGAAACAATTCTTAC
129 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAC
18965219 GTAAATAAGTTTTTAATTCAAAG
194 GTAAATAAGTTTTTAATTCAAAG
* * * ** *
18965242 TCCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGCTTTCCTAATCATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * *
18965307 TGTTCGAAAAA-TGTCTCA-AAGGAATCGA-CTATCTTGAATACTTTAAGGAACCAAAGTTATGA
66 TGTTCGAAAAATTG-CT-AGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
18965369 AAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTACGTCCAAGAACCAAGGGAGAAACAATTCTCA
128 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
18965434 TGTTAATAAGTTTTTAGTTCAAAG
193 CGTAAATAAGTTTTTAATTCAAAG
** * * * ** * *
18965458 ACTGAAAGTTGTTTACGAAATGTCAAACTATTTAGACTAAACAATGCGATTTCCCGAGAATAGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * *
18965523 TGTTC-AGAAAATTGATAGAAGAAATGGATCATCTTGAATACTTTATGGAACTGAAGTTATAATA
66 TGTTCGA-AAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
18965587 GAACTCATAAAAGTTTGAAAAGTTTGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTTTTACG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
18965652 TAAATAAGTTTTTAATTTATAG
195 TAAATAAGTTTTTAATTCAAAG
* *
18965674 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATAGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * ** *
18965739 TGTTCAAAAAAATT-ATAGAAGAAATGGATAGTCTTGAATACTTTATGGAACTAAAGTTATAATA
66 TGTTC-GAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
18965803 GAACTCGTGAAAGTTTGAAAAGTTTGGAAGTTCAGCCAAGAACCAAGAGAGAAACAATTCTCACG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
*
18965868 TAAATAAGTTTTTAATT-ATAG
195 TAAATAAGTTTTTAATTCAAAG
* * * * * * *
18965889 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCTAATAATTCGATTACCTGAGCCTTGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * *
18965954 TGTTC-AAAATATTGCTAGAAGAAATGGATCGTCTTGAATACTATAAGTAACCTAAGTTATAAAA
66 TGTTCGAAAA-ATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * ** *
18966018 GAACTCGTAAAAGTTTGGCAAGTTCGAAAGTGCATCCAAGAACCAAGAGAGAAACAATTCTCATG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
*
18966083 TAAATAAGTTTTTAGCTT-AAAG
195 TAAATAAGTTTTTA-ATTCAAAG
* ** * * * * *
18966105 ACCGAAAGTTGTTTATGAAATGACGAACTATTTAGACCAAATGATACGATTTCCCAATCATTGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * ** * *
18966170 TGTTCAAAAAATTTCTCGGAA-GAATGGATAATTTTGAAAACTTTAAGGAACCGAAGTTATAAAA
66 TGTTCGAAAAATTGCT-AGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * * * * *
18966234 GAACACATAAAAGCTTGACAAGTTTGGAAGCTCAGCCAAGAGCTAAGAGAGAAACAATTCTCACG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
*
18966299 TAAATAAGTTCTTAATTCAAAG
195 TAAATAAGTTTTTAATTCAAAG
* * * * *
18966321 GCCAAAAGTTGTTTGCAAAATGATAAAACTTTTTAGACCAAATTATGCGATTTCCCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGA-CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * *
18966386 ATGTTCGTAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAA
65 ATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
18966451 GAATTCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
18966516 TAAATAAGTTTTTAATTCAAAG
195 TAAATAAGTTTTTAATTCAAAG
* * * * *
18966538 TCCAAAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATACGCTTTCTCGAGCATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * *
18966603 TGTTCGAAAAGTTGCTCGAAGGAATGAATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
66 TGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * **
18966668 AACACGTAAAATTTTAACAAGTCCAGAAGTTCCTCCAAGAACCAAGAGAGAAACAATTCTCACGT
131 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGT
18966733 AAATAAGTTTTTAATTCAAAG
196 AAATAAGTTTTTAATTCAAAG
* * * * *
18966754 ACAAAAAGTTGTTTACAAAATGGCAAAATATTTAGACCAAATGATGTGATTTCCCGAGCCTTGG-
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-CATGGA
* * * * * *
18966818 TTGTTCAAAAAATTGCTAGAAGAAATGAATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAT
65 ATGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* ** * * * *
18966883 GAACTCGTAATAGTTTGACAAGTTCAAAAGTACGTCTAAGAACCAAGAGAGAAACAATTCTCATG
130 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
18966948 TAAATAATTTTTTAGTTTAAAG
195 TAAATAAGTTTTTAATTCAAAG
18966970 A
1 A
18966971 ACTCGCATTG
Statistics
Matches: 1669, Mismatches: 253, Indels: 44
0.85 0.13 0.02
Matches are distributed among these distances:
213 7 0.00
214 101 0.06
215 271 0.16
216 986 0.59
217 303 0.18
218 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
TGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAG
Found at i:18969570 original size:216 final size:215
Alignment explanation
Indices: 18969084--18971907 Score: 3349
Period size: 216 Copynumber: 13.3 Consensus size: 215
18969074 AGTTCAGAAG
* * *
18969084 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATTCAAGAACTCGTAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
** * *
18969149 GTTTGACAAGTTCGGAAGTTCGGCCAAGAACCAAGAGACAAATAATTCTCACGTAAATAAGTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
18969214 TAATTCAAAGA-C-AAAGTTATTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-CC
*
18969277 GAGCATGGAATGTTCGAAAAA
195 GAGCATGGAATGTTCAAAAAA
* * ** *
18969298 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAACAAAAGAACTCGTAACA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* * *
18969363 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCTCACATAAATAAGTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
18969428 TAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACCAAATGATGCGATATCCA
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCC-
*
18969493 GAGCATGGAAAGTTCAAAAAA
195 GAGCATGGAATGTTCAAAAAA
* * * * *
18969514 TTGCTCGAAAGAGA-GGATCATCTTGAATACTTTACGGAATCAAAGTTATTAAAGAACTCATAAA
1 TTGCTCGAAGGA-ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAA
* ** * *
18969578 AGTTTGACAAGTTCGGAACTTCGGCCAAGAACCAAGAGACAAACAATTCTCATGTAAATAAGTTT
65 AGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
18969643 TTAATTCATAGACCAAAAGTTGTTTA-AAAGATGACAAACTATTTGGACC-AA--AT--GA--T-
130 TTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTGGACCAAATGATGCGATTTC
*
18969699 ---GC---GAATGTTCAGAAAA
194 CGAGCATGGAATGTTCAAAAAA
* * * * * *
18969715 TTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAAGAATCGAAGTTATTCAAGAACTCATAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* * * *
18969780 GTTTGACAAGGTT-GGAAGTTCAGCCAGGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTT
66 GTTTGACAA-GTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
18969844 TAAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCT
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTC-
** * *
18969909 CGAGCATTAAAAGTTCAGAAAA
194 CGAGCATGGAATGTTCAAAAAA
* * * *
18969931 TTGCAT-GAAGGAATAGATTGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCCTAAA
1 TTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAA
* * ** * *
18969995 AGTTTG-CAAAGTTTGGAAATTTGTCCATGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
65 AGTTTGAC-AAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * ** *
18970059 TTTAATGCAAAGACAAAAAGTTATTTACAAAATGGTAAACTATTTGGACCAAATGATGCAATTTC
129 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTC
*
18970124 TCGAGCATGGAATGTTTGAAAAAA
194 -CGAGCATGGAATG-TTCAAAAAA
* * ** *
18970148 -TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAACAAAAGAACTCGTAACA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* * *
18970212 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCTCACATAAATAAGTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
18970277 TAATTTAAAGACCAAAAGTTGTATACAAAATGATAAACAATTTGGACCAAATGATGCGATATCCC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGAT-TTCC
* * *
18970342 AAACATGGAAAGTTCAAAAAA
195 GAGCATGGAATGTTCAAAAAA
* * * **
18970363 TTGCTCGAAGGAGA-GGATCATCTTGAATACTTTAAGGAACCGAAGTTATTCAAGAACTTATAAA
1 TTGCTCGAAGGA-ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAA
* ** **
18970427 AGTTTGACAAGTTCGGAACTTCGGCCAAGAACCAAGAGACTAACAATTCTCACGTAAAT-A----
65 AGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
18970487 --AATTCATAGACCAAAAGTTGTTTA-AAAGATGACAAGCTATTTGGACC-AA--AT--GA--T-
130 TTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTGGACCAAATGATGCGATTTC
*
18970541 ---G--T-GAATGTTCAGAAAA
194 CGAGCATGGAATGTTCAAAAAA
* * * * *
18970557 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAGTCAAGAACTCATAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* * * * *
18970622 GTTTGACAAGTTTGGAAGTTCAGCCAGGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
18970687 AAACTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTATTTGGACTAAATGATGCGATTTCTC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTC-C
** *
18970752 GAGCATTAAATGTTCGAAAAA
195 GAGCATGGAATGTTCAAAAAA
* * *
18970773 TTGCAT-GAAGGAATAGATTGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAA
1 TTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAA
* * * * * * *
18970837 ATTTTGACAAGTTCGAAAATTCGTCCAAGAACTAAGAGAGAAATAATTCTCACGTAAATAGGTTT
65 AGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
18970902 TTAATTCAAACACCAAAAGTTGTTTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTCC
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCC
18970967 TGAGCATGGAATGTTCAAAAAA
195 -GAGCATGGAATGTTCAAAAAA
* * * * *
18970989 TTACTCGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-CATAAGAATTCGTAA
1 TTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTA-AAGAACTCGTAA
* ** * * *
18971053 AAGTTTGACAAGGTCAAAAGTTCATCCAAAAACCAAGAGAGAAACCATTCTCATGTAAATAAGTT
64 AAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
18971118 TTTAATTTAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGTGATTTC
129 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-
* *
18971183 CCGAGCATGGAATGCTCGAAAAA
193 CCGAGCATGGAATGTTCAAAAAA
* * * * *
18971206 TTGCTCGAAGGAATGGATCGTCTTGAATACCTTATGGAACCGAAGTTATAAAAGAACTTGTAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* *
18971271 GTTTGACAAGTTCGAAAG-TCTATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTT
66 GTTTGACAAGTTCGGAAGTTC-ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
18971335 TTAATTCAAACACCAAAAGTTGTTTACAAAATAAAAAACTATTTGGACCAAATGATGCGATTTCT
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTC-
* **
18971400 TGAGCATGGAATGTTCTGAAAA
194 CGAGCATGGAATGTTCAAAAAA
* * * *
18971422 TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAATAACTTGTAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* ** * *
18971487 GTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGACAAATAATTCTCACGTAAATAAGTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
18971552 TAATTCAAAGACCAAAAGTTCTTTAC-AAATGACAAACTATTTGGACCAAATGATGCAATTTCCT
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCC-
*
18971616 GGGCATGGAATGTTCGCAAAAAA
195 GAGCATGGAATGTT--CAAAAAA
* * * * *
18971639 TTACTCGAAGGAATGAATCGTCTTGAATA--TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
* * * * * *
18971702 GTTTAACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACCATTCTCAAGTAAATAACTTTT
66 GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
18971767 TAATTTAAATA-CAAAAGTTGTTTACAAAATAAAAAACTATTTGGACCAAATGATGTGATTTCCC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-CC
* * *
18971831 AATCATGGAATGTTCGAAAAA
195 GAGCATGGAATGTTCAAAAAA
* * ** *
18971852 TTGTTCGAAGGAACGGATCGTCTTGAATACTTTAAGGAATTAAAGTTATAAAAGAA
1 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAA
18971908 TTGATGCAAG
Statistics
Matches: 2248, Mismatches: 288, Indels: 147
0.84 0.11 0.05
Matches are distributed among these distances:
193 1 0.00
194 122 0.05
195 2 0.00
200 1 0.00
201 202 0.09
202 13 0.01
204 8 0.00
206 6 0.00
208 7 0.00
209 38 0.02
211 2 0.00
213 36 0.02
214 139 0.06
215 234 0.10
216 1203 0.54
217 232 0.10
218 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAA
GTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCG
AGCATGGAATGTTCAAAAAA
Found at i:18970933 original size:842 final size:842
Alignment explanation
Indices: 18969090--18971890 Score: 3890
Period size: 842 Copynumber: 3.3 Consensus size: 842
18969080 GAAGTTGCTC
* * *
18969090 GAAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATTCAAGAACTCGTAAAAGTTTGA
1 GAAGGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAAGTTTGA
* * * * *
18969155 CAAGTTCGGAAGTTCGGCCAAGAACCAAGAGACAAATAATTCTCACGTAAATAAGTTTTTAATTC
66 CAAGTTCGAAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
*
18969220 AAAGAC-AAAGTTATTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATG
131 AAAGACAAAAGTTATTTACAAAATGATAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATG
*
18969284 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAACAA
196 GAATGTTCGAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAACAA
18969349 AAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCTCA
261 AAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCTCA
18969414 CATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACCAAA
326 CATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACCAAA
*
18969479 TGATGCGATAT-CCAGAGCATGGAAAGTTCAAAAAATTGCTCGAAAGAGAGGATCATCTTGAATA
391 TGATGCGATATCCCA-AGCATGGAAAGTTCAAAAAATTGCTCGAAGGAGAGGATCATCTTGAATA
* * * *
18969543 CTTTACGGAATCAAAGTTATTAAAGAACTCATAAAAGTTTGACAAGTTCGGAACTTCGGCCAAGA
455 CTTTAAGGAACCGAAGTTATTAAAGAACTTATAAAAGTTTGACAAGTTCGGAACTTCGGCCAAGA
*
18969608 ACCAAGAGACAAACAATTCTCATGTAAATAAGTTTTTAATTCATAGACCAAAAGTTGTTTAAAAG
520 ACCAAGAGACAAACAATTCTCACGTAAATAA-----TAATTCATAGACCAAAAGTTGTTTAAAAG
* *
18969673 ATGACAAACTATTTGGACCAAATGATGCGAATGTTCAGAAAATTGCTTGAAGGAATGGATCGTCT
580 ATGACAAACTATTTGGACCAAATGATGTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCT
* *
18969738 TGAATACTTTAAAGAATCGAAGTTATTCAAGAACTCATAAAAGTTTGACAAGGTTGGAAGTTCAG
645 TGAATACTTTAAGGAATCGAAGTTA-TCAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCAG
*
18969803 CCAGGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTTTT
709 CCAGGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTCTT
*
18969868 TACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATTAAAAGTTC-AGAAAAT
774 TACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATTAAATGTTCGA-AAAAT
18969932 TGCAT
838 TGCAT
* *
18969937 GAAGGAATAGATTGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCCTAAAAGTTTG-
1 GAAGGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAAGTTTGA
* * * * * *
18970001 CAAAGTTTGGAAATTTGTCCATGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATG
66 C-AAGTTCGAAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * *
18970066 CAAAGACAAAAAGTTATTTACAAAATGGTAAACTATTTGGACCAAATGATGCAATTTCTCGAGCA
130 CAAAGAC-AAAAGTTATTTACAAAATGATAAACTATTTGGACCAAATGATGCGATTTCCCGAGCA
*
18970131 TGGAATGTTTGAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAAC
194 TGGAATGTTCGAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAAC
18970196 AAAAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCT
259 AAAAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCT
* *
18970261 CACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGATAAACAATTTGGACCA
324 CACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACCA
*
18970326 AATGATGCGATATCCCAAACATGGAAAGTTCAAAAAATTGCTCGAAGGAGAGGATCATCTTGAAT
389 AATGATGCGATATCCCAAGCATGGAAAGTTCAAAAAATTGCTCGAAGGAGAGGATCATCTTGAAT
*
18970391 ACTTTAAGGAACCGAAGTTATTCAAGAACTTATAAAAGTTTGACAAGTTCGGAACTTCGGCCAAG
454 ACTTTAAGGAACCGAAGTTATTAAAGAACTTATAAAAGTTTGACAAGTTCGGAACTTCGGCCAAG
*
18970456 AACCAAGAGACTAACAATTCTCACGTAAAT-A-AATTCATAGACCAAAAGTTGTTTAAAAGATGA
519 AACCAAGAGACAAACAATTCTCACGTAAATAATAATTCATAGACCAAAAGTTGTTTAAAAGATGA
*
18970519 CAAGCTATTTGGACCAAATGATGTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
584 CAAACTATTTGGACCAAATGATGTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
18970584 TACTTTAAGGAATCGAAGTTAGTCAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCAGCCAG
649 TACTTTAAGGAATCGAAGTTA-TCAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCAGCCAG
* * *
18970649 GAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAAACTCAAAGAACAAAAGTTGTTTACA
713 GAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTCTTTACA
*
18970714 AAATGACAAACTATTTGGACTAAATGATGCGATTTCTCGAGCATTAAATGTTCGAAAAATTGCAT
778 AAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATTAAATGTTCGAAAAATTGCAT
* *
18970779 GAAGGAATAGATTGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAATTTTGA
1 GAAGGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAAGTTTGA
* * *
18970844 CAAGTTCGAAAATTCGTCCAAGAACTAAGAGAGAAATAATTCTCACGTAAATAGGTTTTTAATTC
66 CAAGTTCGAAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
18970909 AAACACCAAAAGTTGTTTACAAAATGATAAACTATTTGGTCCAAATGATGCGATTTCCTGAGCAT
131 AAAGA-CAAAAGTTATTTACAAAATGATAAACTATTTGGACCAAATGATGCGATTTCCCGAGCAT
* * * *
18970974 GGAATGTTC-AAAAAATTACTCGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA
195 GGAATGTTCGAAAAAA-TGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAA
* * * * ** * *
18971038 CATAAGAATTCGTAAAAGTTTGACAAGGTCAAAAGTTCATCCAAAAACCAAGAGAGAAACCATTC
258 CAAAAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTC
** * *
18971103 TCATGTAAATAAGTTTTTAATTTAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTGGACC
323 TCACATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACC
* * * * * * *
18971168 AAATGATGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAAGGA-ATGGATCGTCTTGA
388 AAATGATGCGATATCCCAAGCATGGAAAGTTCAAAAAATTGCTCGAAGGAGA-GGATCATCTTGA
* * * * ** **
18971232 ATACCTTATGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTC-GAAAGTCTATCC
452 ATACTTTAAGGAACCGAAGTTATTAAAGAACTTATAAAAGTTTGACAAGTTCGGAACTTC-GGCC
* * * *
18971296 AAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTA
516 AAGAACCAAGAGACAAACAATTCTCACGTAAATAA-----TAATTCATAGACCAAAAGTTGTTTA
* * *
18971361 CAAA-ATAAAAAACTATTTGGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCTGAAAATTG
576 -AAAGATGACAAACTATTTGGACC-AA--AT--GA-----T--G--T-GAATGTTCAGAAAATTG
* * * * * **
18971425 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAATAACTTGTAAAAGTT
625 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAT-CAAGAACTCATAAAAGTT
* * * * * * * *
18971490 TGACAAGTTCGAAAGTT-TGTCCAAGAACCAAGAGACAAATAATTCTCACGTAAATAAGTTTTTA
689 TGACAAGTTTGGAAGTTCAG-CCAGGAACCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAA
*
18971554 ATTCAAAGACCAAAAGTTCTTTAC-AAATGACAAACTATTTGGACCAAATGATGCAATTTC-CTG
753 ATTCAAAGACCAAAAGTTCTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC-G
* ** *
18971617 GGCATGGAATGTTCGCAAAAAATTAC-T
817 AGCATTAAATGTTCG--AAAAATTGCAT
* * **
18971644 CGAAGGAAT-GAATCGTCTTGAATA--TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTT
1 -GAAGGAATAG-ATCGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAAGTTT
* * * * * * *
18971706 AACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACCATTCTCAAGTAAATAACTTTTTAAT
64 GACAAGTTCGAAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * * * *
18971771 TTAAATACAAAAGTTGTTTACAAAATAAAAAACTATTTGGACCAAATGATGTGATTTCCCAATCA
129 TCAAAGACAAAAGTTATTTACAAAATGATAAACTATTTGGACCAAATGATGCGATTTCCCGAGCA
* * *
18971836 TGGAATGTTCGAAAAATTGTTCGAAGGAACGGATCGTCTTGAATACTTTAAGGAA
194 TGGAATGTTCGAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
18971891 TTAAAGTTAT
Statistics
Matches: 1753, Mismatches: 159, Indels: 69
0.88 0.08 0.03
Matches are distributed among these distances:
841 6 0.00
842 470 0.27
843 291 0.17
844 1 0.00
846 1 0.00
847 120 0.07
848 1 0.00
849 390 0.22
850 41 0.02
851 5 0.00
853 2 0.00
855 2 0.00
860 1 0.00
862 32 0.02
863 65 0.04
864 148 0.08
865 149 0.08
866 28 0.02
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (842 bp):
GAAGGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAAGTTTGA
CAAGTTCGAAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACAAAAGTTATTTACAAAATGATAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATG
GAATGTTCGAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTAACAA
AAGAACTCGTAACAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACCATTCTCA
CATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTGGACCAAA
TGATGCGATATCCCAAGCATGGAAAGTTCAAAAAATTGCTCGAAGGAGAGGATCATCTTGAATAC
TTTAAGGAACCGAAGTTATTAAAGAACTTATAAAAGTTTGACAAGTTCGGAACTTCGGCCAAGAA
CCAAGAGACAAACAATTCTCACGTAAATAATAATTCATAGACCAAAAGTTGTTTAAAAGATGACA
AACTATTTGGACCAAATGATGTGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
CTTTAAGGAATCGAAGTTATCAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCAGCCAGGAA
CCAAAAGATAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTCTTTACAAAA
TGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATTAAATGTTCGAAAAATTGCAT
Found at i:18971376 original size:433 final size:430
Alignment explanation
Indices: 18970543--18971890 Score: 1862
Period size: 433 Copynumber: 3.1 Consensus size: 430
18970533 CAAATGATGT
* * * *
18970543 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAGTC
1 GAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAAT-
* * * * * * * *
18970608 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCAGCCAGGAACCAAAAGATAAACAATTCTCA
65 AAGAATTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCA
* * * *
18970673 CGTAAATAAGTTTTAAACTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTATTTGGACTAAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAA
* ** * *
18970738 TGATGCGATTTCTCGAGCATTAAATGTTCGAAAAATTGCAT-GAAGGAATAGATTGTCTTGAATA
195 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATA
* ** * * *
18970802 CTTTAAGGAACCAAAGTTATTCAAGAACTCGTAAAATTTTGACAAGTTCGAAAATTCGTCCAAGA
259 C-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGA
* *
18970867 ACTAAGAGAGAAATAATTCTCACGTAAATAGGTTTTTAATTCAAACACCAAAAGTTGTTTACAAA
323 ACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAAA
* * *
18970932 ATGATAAACTATTTGGTCCAAATGATGCGATTTCCTGAGCATG
388 ATAAAAAACTATTTGGACCAAATGATGCGATTTCCTGAGCATG
*
18970975 GAATGTTCAAAAAATTACTCGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTACA
1 GAATGTTCAAAAAATTGCTC-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-A
* * * * *
18971040 TAAGAATTCGTAAAAGTTTGACAAGGTCAAAAGTTCATCCAAAAACCAAGAGAGAAACCATTCTC
64 TAAGAATTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTC
* * *
18971105 ATGTAAATAAGTTTTTAATTTAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTGGACCAA
129 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAA
* *
18971170 ATGATGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
194 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* *
18971235 CCTTATGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAG-TCTATCCAAG
259 -CTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC-ATCCAAG
18971299 AACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAA
322 AACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAA
*
18971364 AATAAAAAACTATTTGGACCAAATGATGCGATTTCTTGAGCATG
387 AATAAAAAACTATTTGGACCAAATGATGCGATTTCCTGAGCATG
** * *
18971408 GAATGTTCTGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
1 GAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-AT
* ** *
18971473 AATAACTT-GTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGACAAATAATTCTC
65 AAGAA-TTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTC
*
18971537 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTCTTTAC-AAATGACAAACTATTTGGACCAA
129 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAA
* * * * *
18971601 ATGATGCAATTTCCTGGGCATGGAATGTTCGCAAAAAATTACTCGAAGGAATGAATCGTCTTGAA
194 ATGATGCGATTTCCCGAGCATGGAATGTTCG--AAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * *
18971666 TA-TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCATCCAAA
257 TACTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAG
** * * * *
18971730 AACCAAGAGAGAAACCATTCTCAAGTAAATAACTTTTTAATTTAAATA-CAAAAGTTGTTTACAA
322 AACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAA
* ** *
18971794 AATAAAAAACTATTTGGACCAAATGATGTGATTTCCCAATCATG
387 AATAAAAAACTATTTGGACCAAATGATGCGATTTCCTGAGCATG
* * * *
18971838 GAATGTTCGAAAAATTGTTCGAAGGAACGGATCGTCTTGAATACTTTAAGGAA
1 GAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
18971891 TTAAAGTTAT
Statistics
Matches: 815, Mismatches: 92, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
430 103 0.13
431 145 0.18
432 154 0.19
433 411 0.50
434 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (430 bp):
GAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAATA
AGAATTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACC
AAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAAAATA
AAAAACTATTTGGACCAAATGATGCGATTTCCTGAGCATG
Found at i:18979542 original size:13 final size:13
Alignment explanation
Indices: 18979518--18979556 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
18979508 TATTGTCAGC
18979518 TCTTATTATTTTAT
1 TCTTATT-TTTTAT
*
18979532 TGTTATTTTTTAT
1 TCTTATTTTTTAT
*
18979545 TCTGATTTTTTA
1 TCTTATTTTTTA
18979557 ATAATTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (13 bp):
TCTTATTTTTTAT
Found at i:18989255 original size:18 final size:18
Alignment explanation
Indices: 18989232--18989273 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
18989222 AATCTGCTGT
18989232 ATTTTC-TCTTTTTTTTG
1 ATTTTCTTCTTTTTTTTG
18989249 AATTTTCTTTCTTTTTTTTG
1 -ATTTTC-TTCTTTTTTTTG
18989269 ATTTT
1 ATTTT
18989274 TTTAGAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
20 11 0.50
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.76
Consensus pattern (18 bp):
ATTTTCTTCTTTTTTTTG
Found at i:19003471 original size:215 final size:215
Alignment explanation
Indices: 19003017--19005990 Score: 3036
Period size: 216 Copynumber: 13.9 Consensus size: 215
19003007 TTCTAGACAT
* * * * *
19003017 TCGCATCAGTTGATTCAAATAGTTTTTAATTTTGTATAA-AACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
19003081 TTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACATCCAAACTTGTAAAACCTTTT
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-CTTTT
* * *
19003146 ACGAGTTATTTTATAACTTCGGTGT-CTTAAAGTATTCAAGACAATCCATTCCTTCAAGCAATTT
129 ACGAGTT-CTTTATAACTTCGGT-TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
** * *
19003210 TTTGAACATTCCATGCTCGGGGAA
192 TCCGAACATTCCATGCTAGGGAAA
* * * *
19003234 TCACATCATTTGGTCCAAATAGTTTGTGATTTTGTAAACAACATTTGTTCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
19003299 TATTTACGTGA-AGATTGTTTGTTTATTGGTTATTGGCCGAACTTCCGAACTTGTAAAACTTTTA
66 TATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * *
19003363 CAAGTTCTTTATAAGTTTGGTTCATTAAAGTATTCTAGACGATCCATTCCTTCCAGCAATTTTCC
130 CGAGTTCTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
19003428 GAACATTCCATGCTAGGGAAA
195 GAACATTCCATGCTAGGGAAA
* * *
19003449 TCGCATCATTTGGGCAAAATAGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * *
19003513 TATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
*
19003578 GAGTTCTTATATAACTTCGGTTCCTTGCTTAAAATTTTTTTACAGTATTCAAGAAGATCCATTCC
131 GAGTTCTT-TATAACTTCGGTT-C---CTT---A-------A-AGTATTCAAGACGATCCATTCC
** **** ** * *
19003643 TTAAAATTTTTTTTTGAACATTCCATGCTTGGTAAA
180 TTCGAGCAATTTTCCGAACATTCCATGCTAGGGAAA
* * *
19003679 TCGCATCATTTGGTCCAAATTGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAA--ATAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* ***
19003742 TATTTACGT--GAATTGTTTGTCAAATGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
19003805 GAGTTCATTTATAACTTCGGTTCCTTAAAGTA-TCAAGACGATCCATTCCTTCGAGCAATTTTCC
131 GAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* *
19003869 GAACATTCCATGCTCGTGAAA
195 GAACATTCCATGCTAGGGAAA
* * ** * * *
19003890 TAGCATCTTTTGAACCATATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
19003955 TATTTATGTGAGAATTGTTTGTCTATTGGTTCTTGGTCTAACTTCCGAACTTGTCAAACTTTCAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * ** *
19004020 TATTTCTTTTATAACATCTATTCCTTAAAGTATT-AAGATGATCCATTCCTTC-ATGCAATTTTC
131 GAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTC
*
19004083 AGAACATT-C--GC-------A
194 CGAACATTCCATGCTAGGGAAA
* * *
19004095 T---A--ATTTGGTCCATATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTTAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* *
19004155 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* ** * * * * *
19004220 GAGTTCTTTTATAACATCAATTCCTTAAAGTATTTAAAACGATCCATCCCTTCGAGTAATTTTCT
131 GAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * *
19004285 AAACATT-CGT-TTA-GGAAA
195 GAACATTCCATGCTAGGGAAA
* * *** * * *
19004303 TCGCATAACTTGGAATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGATTTAAAAAGT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * *
19004368 TATTTACGTGAGAA-TGATTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAACTTGTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
19004432 GAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCATCTAGCAATTTTTC
131 GAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * *
19004497 GAACTTTCAATGTTTGGGAAA
195 GAACATTCCATGCTAGGGAAA
* * * * *
19004518 TCGTATCATTTAGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
19004583 TATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
19004647 GAGCTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA-TTTCC
131 GAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * *
19004711 TGAACATTCCTTACTTGGGAAA
195 -GAACATTCCATGCTAGGGAAA
** * * * * *
19004733 GAGCATAATTTTGTCCAAACAGTTAT-TCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAG
1 TCGCATCATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
19004797 TTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTATT
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTT
* * * * * * *
19004861 ACTAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTCAGGACGATCCATCCCTTCGAGCAATTTT
129 ACGAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
** **
19004926 CTAAACATTCCATATTCA-GGAAA
193 CCGAACATTCCATGCT-AGGGAAA
* * *** *
19004949 TCGCATAAATTGGAGTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
19005014 TATTTACATGAGAATTGATTCACTCTTGGTTTTTGGAC--A------AACTT-CCAAACTTGTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
19005070 GAGTTCTTGAATAACTTTGGTTCCTTAAAGTTTTCAAGATGATCCATTCCTTCGAGCAATTTTCT
131 GAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* *
19005135 GAACATTCCATGCTCGGGGAA
195 GAACATTCCATGCTAGGGAAA
* * * * * *
19005156 TCGCATCATATGATCTAAATAGTTTATGATATTTGTAAACAACTTTTGGTCTTTCAATTAAAAAC
1 TCGCATCATTTGGTCCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * **
19005221 TTATTTACGTGAGAATTATTTTTCTATTGGTTCTTGGATTAACTTCCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * *
19005286 CAAGTTCTTTTATAACTTCGGTACCTTAAAGT-GTCATGACGATCCATTCCTTTGAGCAATTTTT
130 CGAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* *
19005350 TGAACATTCCATGCTCGGGAAA
194 CGAACATTCCATGCTAGGGAAA
* * * * * ** *
19005372 TCACATCTTTTCGTCCAAATAGTTTATCATTTTGTAAAAAAACTTCCGGTCTTTGATTTAAAAAC
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * * *
19005437 TTATTTATGTGAGATTTATTTGTCTATTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * *
19005502 CGATTTCTTTTATAACATCTGTTTCTTAAAGTATTCAAGACGATCCATTCCTTC-ATGCAATTTT
130 CGAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTT
*
19005566 CAG-A-A---CAT--T-----AA
193 CCGAACATTCCATGCTAGGGAAA
* *
19005577 ---CATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
19005639 TATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
19005702 GAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGTAA-TTTCT
131 GAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-
* *
19005766 CAAACATTCCATGCTAGAGAAA
194 CGAACATTCCATGCTAGGGAAA
* * * * *
19005788 TCGCATCATTTTGTCCAAATAGTTAGCCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *
19005853 TATCTATGTGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTCCAAACTTGTCAAACTTTTA
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * *
19005917 CGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTTCTTCGAGCAATTTTC
130 CGAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
19005982 AGAACATTC
194 CGAACATTC
19005991 TCATAATTTG
Statistics
Matches: 2297, Mismatches: 367, Indels: 187
0.81 0.13 0.07
Matches are distributed among these distances:
198 6 0.00
199 88 0.04
200 143 0.06
201 70 0.03
202 30 0.01
204 3 0.00
205 4 0.00
206 1 0.00
207 99 0.04
208 70 0.03
210 2 0.00
211 94 0.04
212 108 0.05
213 78 0.03
214 151 0.07
215 490 0.21
216 495 0.22
217 172 0.07
218 2 0.00
219 2 0.00
220 1 0.00
222 1 0.00
223 3 0.00
226 1 0.00
227 67 0.03
228 2 0.00
229 15 0.01
230 99 0.04
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
GAGTTCTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
AACATTCCATGCTAGGGAAA
Found at i:19005961 original size:632 final size:635
Alignment explanation
Indices: 19002874--19006803 Score: 3781
Period size: 632 Copynumber: 6.2 Consensus size: 635
19002864 TCCTTTGAGC
* * * * * * * *
19002874 AAAAACTTATTTACATGAGAATTATTTGTCTATTGGTTCTTGGCCAAACTTTTGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
19002939 CTTTTACGTA-TTCTTTTATAACTTC-GATTCCTTAAAGTTTTCAAGACGATCCATTCCTCCAAG
66 CTTTTACG-AGTTCTTTTATAACATCTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
19003002 CAATTTTCTAG--ACATT---CGCATCAGTTGATTCAAATAGTTTTTAATTTTGTATAA-AACTT
129 CAATTTTCTAGACACATTAAAC-CATAATTTGGTCCAAATAGTTTGTCATTTTGTA-AACAACTT
* * * * *
19003061 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACAT
192 TTGGTCTTTGAATTTAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTT
* * ** *
19003126 CCAAACTTGTAAAACCTTTTACGAGTTATTTTATAACTTCGGTGT-CTTAAAGTATTCAAGACAA
257 CCAAACTTGTCAAA-CTTTTACGAGTTCTTGAATAACTTCGGT-TCCTTAAAGTATTCAAGACGA
* * * * *
19003190 TCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCGGGGAATCACATCATTTGGTCCAAATA
320 TCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCCAAATA
* * *
19003255 GTTTGTGATTTTGTAAACAACATTTGTTCTTTGAATTAAAAACTTATTTACGTGA-AGATTGTTT
384 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA-ATTGTTT
* * * * * *
19003319 GTTTATTGGTTATTGGCCGAACTTCCGAACTTGTAAAACTTTTACAAGTTC-TTTATAAGTTTGG
448 GTCTATTGGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGG
* * * *
19003383 TTCATTAAAGTATTCTAGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTAGGGAA
513 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGCTCGGGAA
* * * *
19003448 ATCGCATCATTTGGGCAAAATAGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAATT
578 ATCACATC-TTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
19003507 -AAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
19003571 CTTTTACGAGTTCTTATATAACTTCGGTTCCTTGCTTAAAATTTTTTTACAGTATTCAAGAAGAT
66 CTTTTACGAGTTCTTTTATAACATCTGTT-C---CTT---A-------A-AGTATTCAAGACGAT
* * * *
19003636 CCATTCCTT--A-AAATTTTTTTTTGAACATTCCATGCTTGGTAAATCGCATCATTTGGTCCAAA
116 CCATTCCTTCGAGCAA--TTTTCTAG-ACA---CA----T--TAAA-C-CATAATTTGGTCCAAA
* * * *
19003698 TTGTTTCTCATTTTGTAAACAACTTTTGGTCTTTGAA-AT-AAACTTATTTACGT--GAATTGTT
167 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTGAGAATTGAT
* *** * *
19003759 TGTCAAATGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCATT-TATAACTTC
232 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTC-TTGAATAACTTC
*
19003823 GGTTCCTTAAAGTA-TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGTG
296 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGG
* * * * *
19003887 AAATAGCATC-TTTTGAACCATATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAA
360 AAATCGCATCATTTTG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
*
19003951 AACTTATTTATGTGAGAATTGTTTGTCTATTGGTTCTTGGTCT-AACTTCCGAACTTGTCAAACT
424 AACTTATTTACGTGAGAATTGTTTGTCTATTGGTTCTTGG-CTGAACTTCCGAACTTGTCAAACT
* * * * ** *
19004015 TTCACTATTTCTTTTATAACATCTATTCCTTAAAGTATT-AAGATGATCCATTCCTT-CATGCAA
488 TTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCA-GCAA
* *
19004078 TTTTCAGAACATT-C--G--C-----AT-A-A--TTTGGTCCATATAGTTTGTCATTTTGTAAAC
552 TTTTCAGAACATTCCATGCTCGGGAAATCACATCTTTGGTCCAAATAGTTTATCATTTTGTAAAC
*
19004129 AACTTTTGGTCTTTAAATT
617 AACTTTTGGTCTTTGAATT
* *
19004148 TAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * * * *
19004213 CTTTTACGAGTTCTTTTATAACATCAATTCCTTAAAGTATTTAAAACGATCCATCCCTTCGAGTA
66 CTTTTACGAGTTCTTTTATAACATCTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * ***
19004278 ATTTTCTAAACATTCGTTTAGGAAATCGCATAACTTGGAATAAATAGTTTGTCATTTTGTAAACA
131 ATTTTCTAGACA--C-ATT---AAA-C-CATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * *
19004343 ACTTTTGGTCCTTG-ATTTAAAAAGTTATTTACGTGAGAA-TGATTCTCTCTTGGTTCTTGGACT
188 ACTTTTGGTCTTTGAATTT-AAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACG
* *
19004406 AACTTCCGAACTTGTCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGA
252 AACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * * *
19004471 TGATCCATTCCATCTAGCAATTTTTCGAACTTTCAATGTTTGGGAAATCGTATCATTTAGTCCAA
317 CGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCCAA
* * *
19004536 ATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGT-AGAATTGT
381 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * **
19004600 TTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGCCAAACTTTTACGAGCTCTTGAATAACTT
446 TTGTCTATTGGTTCTTGG-CTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTT
* * * * * * * *
19004664 TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCCTGAACATTCCTTACTTGG
510 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGCTCGG
* * * * *
19004729 GAAA-GAGCATAATTTTGTCCAAACAG-TTATTCATTTTGTAAACAACTTTTGGTCTTTGATTT
575 GAAATCA-CAT-CTTTGGTCCAAATAGTTTA-TCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
19004791 AAAAAGTTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTTCGAACTTGTCAA
* * * * * * * * *
19004855 ACTATTACTAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTCAGGACGATCCATCCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACATCTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ***
19004920 AATTTTCTAAACATTCCATATTCAGGAAATCGCATAAATTGGAGTAAATAGTTTGTCATTTTGTA
130 AATTTTCTAGACA---C--ATT----AAA-C-CATAATTTGGTCCAAATAGTTTGTCATTTTGTA
* * * * *
19004985 AATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGATTCACTCTTGGTTTTTGG
184 AACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGG
* * *
19005050 ACAAACTTCCAAACTTG---------TACGAGTTCTTGAATAACTTTGGTTCCTTAAAGTTTTCA
249 ACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCA
* * *
19005106 AGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGGAATCGCATCA-TATGAT
314 AGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTTG-T
* * * *
19005170 CTAAATAGTTTATGATATTTGTAAACAACTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGA
377 CCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * *
19005235 ATTATTTTTCTATTGGTTCTTGGATTAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATA
441 ATTGTTTGTCTATTGGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATA
* * * ** **
19005300 ACTTCGGTACCTTAAAGT-GTCATGACGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATGC
506 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGC
* * ** *
19005364 TCGGGAAATCACATCTTTTCGTCCAAATAGTTTATCATTTTGTAAAAAAACTTCCGGTCTTTGAT
571 TCGGGAAATCACATC-TTTGGTCCAAATAGTTTATCATTTTGT-AAACAACTTTTGGTCTTTGAA
19005429 TT
634 TT
* * * * * * * *
19005431 AAAAACTTATTTATGTGAGATTTATTTGTCTATTGGTTCTTGGCCGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
19005496 CTTTTACGATTTCTTTTATAACATCTGTTTCTTAAAGTATTCAAGACGATCCATTCCTTC-ATGC
66 CTTTTACGAGTTCTTTTATAACATCTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GC
19005560 AATTTTC-AGA-ACATT-AA-CATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTG
130 AATTTTCTAGACACATTAAACCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTG
19005621 GTCTTTGAATTTAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCA
195 GTCTTTGAATTTAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCA
* *
19005684 AACTTGTCAAACTTTTACGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCAT
260 AACTTGTCAAACTTTTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
19005749 TCCTTCGAGTAATTTCTCAAACATTCCATGCTAGAGAAATCGCATCATTTTGTCCAAATAGTTAG
325 TCCTTCGAGCAATTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCCAAATAGTTTG
* * * * * * **
19005814 CCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTATCTATGTGAGAATTGTTTCTCCCT
389 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTAT
* * * * *
19005879 TGGTTCTTGGCTGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTCTATAACATCGGTCCCTT
454 TGGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT
* * *
19005944 AAAGCATTCAAGACGATCCATTTCTTCGAGCAATTTTCAGAACA-T---T-CTC-----AT-A-A
519 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGCTCGGGAAATCACA
19005997 --TTTGGTCCAAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATT
584 TCTTTGGTCC-AAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
19006048 AAAATCTTATTCACGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAGCTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
19006113 CATTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAA
66 CTTTTACGAGTTCTTTTATAACATCTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* ** * *
19006178 ATTTTCCA-AGCATTCAATGCTCAGGAAATTGTATTATTTGGTCCAAATAGTTTGACATTTTGTA
131 ATTTTCTAGA-CA--C-AT--T----AAA--CCATAATTTGGTCCAAATAGTTTGTCATTTTGTA
* * * *
19006242 GACAACTTTTGGTCTTTG-ATTTAAAAACTTATTTACGTGAGAA-TCATTTATCTATTGGTTCTT
184 AACAACTTTTGGTCTTTGAATTT-AAAACTTATTTACGTGAGAATTGA-TTCTCTCTTGGTTCTT
* * * * * * ** * * * *
19006305 GGCCGAACTTTCGAACTTGTCAAGCTTTTACAAGTTATTTTATAACTCCAGTTCCTTAAATTTTT
247 GGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATT
* * * * * *
19006370 CAAGACGATCCATTTCGTCAAGCAATTTTCTAA-A---CA---T-------TCGCATCAGTTGGT
312 CAAGACGATCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGT
* * * *
19006421 TCAAATAGTTTTTAATTTTGTATACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
377 CCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * *
19006486 TTATTTGTTTATTGGTTATTGGCCGAACTTCCGAACTTGTAAAACTTATACAAGTTCTTTTATAA
442 TTGTTTGTCTATTGGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAA
* * ** *
19006551 GTTCGGTTCATTAAAGTATTTTAGACGATCCATTCCTTTCAGCAATTTTCA-AACATTCCATGCT
507 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGCT
* * * * * * *
19006615 CGGGAAATCGCATCATTTAGTCAAAATAGTTTCTCATTTTGTACATAACTTTTGATCTTTGAATT
572 CGGGAAATCACATC-TTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
19006680 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTT-TTAGGATGAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAA
* * *
19006744 ACTTTTACGAGTTCTTATATAAC-TTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT
65 ACTTTTACGAGTTCTTTTATAACATCT-GTTCCTTAAAGTATTCAAGACGATCCATTCCTT
19006804 AGAGAAAATT
Statistics
Matches: 2749, Mismatches: 399, Indels: 299
0.80 0.12 0.09
Matches are distributed among these distances:
617 145 0.05
618 25 0.01
619 163 0.06
620 1 0.00
621 3 0.00
622 5 0.00
623 34 0.01
624 53 0.02
625 72 0.03
626 18 0.01
627 171 0.06
628 142 0.05
629 15 0.01
630 3 0.00
631 125 0.05
632 419 0.15
633 22 0.01
634 87 0.03
635 2 0.00
636 3 0.00
637 7 0.00
638 100 0.04
639 116 0.04
640 209 0.08
641 47 0.02
642 89 0.03
643 164 0.06
644 5 0.00
645 3 0.00
646 83 0.03
647 58 0.02
649 1 0.00
652 2 0.00
653 1 0.00
655 11 0.00
656 185 0.07
657 56 0.02
658 42 0.02
660 14 0.01
661 2 0.00
662 46 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (635 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACATCTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCTAGACACATTAAACCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGG
TCTTTGAATTTAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCAA
ACTTGTCAAACTTTTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTTGTCCAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTATTG
GTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAA
AGTATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGCTCGGGAAATCACATC
TTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATT
Found at i:19006157 original size:202 final size:203
Alignment explanation
Indices: 19005795--19006803 Score: 983
Period size: 201 Copynumber: 4.9 Consensus size: 203
19005785 AAATCGCATC
* * * * *
19005795 ATTTTGTCCAAATAG-TTAGCCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTATCTA
1 ATTTGGTCCAAATAGTTTA-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* ** *
19005859 TGTGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTCCAAACTTGTCAAACTTTTACGAGTT
65 CGTGAGAATTGTTTCTCTATTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTT
* * * * * *
19005923 CTTCTATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTTCTTCGAGCAATTTTCAGAACA
129 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAAAACA
19005988 TTCTC-ATA-
194 TTCTCAATAT
* *
19005996 ATTTGGTCCAAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTCA
1 ATTTGGTCC-AAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
19006061 CGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAGCTTCCGAACTTGTCAAACATTTACGAGTTC
65 CGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * *
19006126 TTTTATAACTTCTGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCAAGCAT
130 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CAA--A-
* *
19006191 TCAATGCTCAGGAAATTGTATT
191 AC-ATTCTC----AA---TA-T
* *
19006213 ATTTGGTCCAAATAGTTTGA-CATTTTGTAGACAACTTTTGGTCTTTGATTTAAAAACTTATTTA
1 ATTTGGTCCAAATAGTTT-ATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
** * * * * * *
19006277 CGTGAGAATCATTTATCTATTGGTTCTTGGCCGAACTTTCGAACTTGTCAAGCTTTTACAAGTTA
65 CGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * * * * * *
19006342 TTTTATAACTCCAGTTCCTTAAATTTTTCAAGACGATCCATTTCGTCAAGCAATTTTCTAAACAT
130 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAAAACAT
* *
19006407 TCGC-AT-C
195 TCTCAATAT
* * * * *
19006414 AGTTGGTTCAAATAGTTTTTAATTTTGTATACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
1 ATTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * * *
19006479 GTGAGAATTATTTGTTTATTGGTTATTGGCCGAACTTCCGAACTTGTAAAACTTATACAAGTTCT
66 GTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * **
19006544 TTTATAAGTTCGGTTCATTAAAGTATTTTAGACGATCCATTCCTTTC-AGCAATTTTCAAACATT
131 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTCAAA-A--
*
19006608 CCATGCTCGGGAAATCGCAT
192 -CATTCTC----AAT---AT
* * * * * *
19006628 CATTTAGTCAAAATAGTTTCTCATTTTGTACATAACTTTTGATCTTTGAATTAAAAACTTATTTA
1 -ATTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * *
19006693 CGTGAGAATTGCTTCTCTCTTGGTT-TTAGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTT
65 CGTGAGAATTGTTTCTCTATTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
* * *
19006757 CTTATATAACTTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT
129 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
19006804 AGAGAAAATT
Statistics
Matches: 662, Mismatches: 110, Indels: 59
0.80 0.13 0.07
Matches are distributed among these distances:
201 168 0.25
202 154 0.23
203 7 0.01
205 6 0.01
206 2 0.00
207 5 0.01
210 2 0.00
211 4 0.01
212 2 0.00
213 1 0.00
214 4 0.01
215 146 0.22
216 151 0.23
217 10 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (203 bp):
ATTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAAAACATT
CTCAATAT
Found at i:19006382 original size:216 final size:215
Alignment explanation
Indices: 19004090--19006905 Score: 2374
Period size: 216 Copynumber: 13.3 Consensus size: 215
19004080 TTCAGAACAT
* *
19004090 TCGCATAATTTGGTCCATATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTT-AAAAC
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GATTTAAAAAC
* * *
19004154 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* ** * * * *
19004219 CGAGTTCTTTTATAACATCAATTCCTTAAAGTATTTAAAACGATCCATCCCTTCGAGTAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * *
19004284 TAAACATT-C--GTTTAGGAAA
195 -CAACATTCCATGCTCAGGAAA
* *** * *
19004303 TCGCATAACTTGGAATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGATTTAAAAAGT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
* * *
19004368 TATTTACGTGAGAATGA-TTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAACTTGTAC
66 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
** * * *
19004432 GAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCATCTAGCAATTTTTC
131 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTC
* * * * **
19004497 GAACTTTCAATGTTTGGGAAA
195 CAACATTCCATGCTCAGGAAA
* * * * * * *
19004518 TCGTATCATTTAGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
* *
19004583 TATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAACTTTTAC
66 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* ** * *
19004647 GAGCTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAA-TTTCC
131 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * **
19004711 TGAACATTCCTTACTTGGGAAA
196 --AACATTCCATGCTCAGGAAA
** * * *
19004733 GAGCATAATTTTGTCCAAACAGTTAT-TCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAG
1 TCGCATAATTTGGTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAC
* * * * *
19004797 TTATTTACGCGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTATT
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTT
* * * * * * * *
19004861 ACTAGTTCTTCTATAGCATCGGTCCCTTAAAGCATTCAGGACGATCCATCCCTTCGAGCAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* **
19004926 CTAAACATTCCATATTCAGGAAA
194 C-CAACATTCCATGCTCAGGAAA
* *** * *
19004949 TCGCATAAATTGGAGTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
* * * * *
19005014 TATTTACATGAGAATTGA-TTCACTCTTGGTTTTTGGAC--A------AACTT-CCAAACTTGTA
66 TATTTACGTGAGAATT-ATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
** * * *
19005069 CGAGTTCTTGAATAACTTTGGTTCCTTAAAGTTTTCAAGATGATCCATTCCTTCGAGCAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * *
19005134 TGAACATTCCATGCTCGGGGAA
195 -CAACATTCCATGCTCAGGAAA
* * * * * * * *
19005156 TCGCATCATATGATCTAAATAGTTTATGATATTTGTAAACAACTTTTGGTCTTTCAATTAAAAAC
1 TCGCATAATTTGGTCCAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGATTTAAAAAC
* * **
19005221 TTATTTACGTGAGAATTATTTTTCTATTGGTTCTTGGATTAACTTCCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * *
19005286 CAAGTTCTTTTATAACTTCGGTACCTTAAAGT-GTCATGACGATCCATTCCTTTGAGCAATTTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTT
** *
19005350 TGAACATTCCATGCTCGGGAAA
194 CCAACATTCCATGCTCAGGAAA
* ** * * * **
19005372 TCACATCTTTTCGTCCAAATAGTTTATCATTTTGTAAAAAAACTTCCGGTCTTTGATTTAAAAAC
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGATTTAAAAAC
* * * * * *
19005437 TTATTTATGTGAGATTTATTTGTCTATTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * *
19005502 CGATTTCTTTTATAACATCTGTTTCTTAAAGTATTCAAGACGATCCATTCCTTC-ATGCAATTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTT
19005566 -CAGA-A---CAT--T-----AA
194 CCA-ACATTCCATGCTCAGGAAA
19005577 ---CATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTT-AAAAC
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-ATTTAAAAAC
* *
19005638 TTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
** * * *
19005701 CGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAGTAATTTCT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-T
*
19005766 CAAACATTCCATGCT-AGAGAAA
194 CCAACATTCCATGCTCAG-GAAA
* * * * *
19005788 TCGCATCATTTTGTCCAAATAGTTAGCCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
* * * * *
19005853 TATCTATGTGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTCCAAACTTGTCAAACTTTTA
66 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTA
* * * * *
19005917 CGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTTCTTCGAGCAATTTT-
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
19005981 CAGA-A---CAT--TC------
195 CA-ACATTCCATGCTCAGGAAA
* * *
19005991 T--CATAATTTGGTCCAAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATC
1 TCGCATAATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAC
* * * * *
19006054 TTATTCACGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAGCTTCCGAACTTGTCAAACATTTA
65 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * *
19006119 CGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
19006184 CAAGCATTCAATGCTCAGGAAA
195 CAA-CATTCCATGCTCAGGAAA
* * * * *
19006206 TTGTATTATTTGGTCCAAATAGTTTGACATTTTGTAGACAACTTTTGGTCTTTGATTTAAAAACT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
* * * * * *
19006271 TATTTACGTGAGAATCATTTATCTATTGGTTCTTGGCCGAACTTTCGAACTTGTCAAGCTTTTAC
66 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * * * *
19006336 AAGTTATTTTATAACTCCAGTTCCTTAAATTTTTCAAGACGATCCATTTCGTCAAGCAATTTTCT
131 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-
* *
19006401 AAACATTCGCAT-CAGT-TGGTTCAAA
195 CAACATTC-CATGC--TCAGG---AAA
* ** * * * *
19006426 TAGTTTTTAATTTTGTATACAACT--TTTGGTC--TTTGAATTAAA-AACTTATT--TAC-GTGA
1 TCG--CATAA-TTTG-GTCCAAATAGTTT-GTCATTTTG---TAAACAACTT-TTGGT-CTTTGA
* ** * * * ** **** * * ***
19006483 --GAATTATTTGTTTA-TTG-G--TTA-TTGGC-CGAACTTC-CGAAC-TTGT-----A------
56 TTTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * **
19006527 AAACTTATACAAGTTCTTTTATAAGTTCGGTTCATTAAAGTATTTTAGACGATCCATTCCTTTC-
121 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCG
* *
19006591 AGCAATTTTCAAACATTCCATGCTCGGGAAA
185 AGCAATTTTCCAACATTCCATGCTCAGGAAA
* * * * * * * *
19006622 TCGCATCATTTAGTCAAAATAGTTTCTCATTTTGTACATAACTTTTGATCTTTGAATTAAAAACT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
** * * *
19006687 TATTTACGTGAGAATTGCTTCTCTCTTGGTT-TTAGGATGAACTTTCAAACTTGTCAAACTTTTA
66 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * *
19006751 CGAGTTCTTATATAACTTTGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTAGAGAAAATTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* *
19006816 CAAATATTCCATGCT-TGGTAAA
195 C-AACATTCCATGCTCAGG-AAA
* * * ** * * *
19006838 TTGCATCATTTGGTCTAAATTTTTTCTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACT
1 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
19006903 TAT
66 TAT
19006906 GATACGAAAC
Statistics
Matches: 2093, Mismatches: 383, Indels: 251
0.77 0.14 0.09
Matches are distributed among these distances:
192 9 0.00
193 11 0.01
194 9 0.00
195 4 0.00
196 14 0.01
197 2 0.00
198 2 0.00
199 98 0.05
200 16 0.01
201 110 0.05
202 191 0.09
203 6 0.00
204 5 0.00
205 2 0.00
206 1 0.00
207 104 0.05
208 68 0.03
209 4 0.00
210 2 0.00
211 5 0.00
212 103 0.05
213 82 0.04
214 79 0.04
215 321 0.15
216 707 0.34
217 84 0.04
218 2 0.00
219 2 0.00
220 14 0.01
221 4 0.00
222 10 0.00
223 12 0.01
224 10 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAACT
TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
AACATTCCATGCTCAGGAAA
Found at i:19008748 original size:215 final size:212
Alignment explanation
Indices: 19008277--19008769 Score: 555
Period size: 215 Copynumber: 2.3 Consensus size: 212
19008267 GACTCGTATC
* * * *
19008277 AACTTATTTATGTGAGAATTGTTTGTCAATTGATTCTTGGATGAACTTTCGAACTTGTCATACTT
1 AACTTATTTACGTGAGAATTGTTTGTCAATTGATTCTTGGACGAACTTTCGAACTTGTCAAAATT
* *
19008342 TTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATT
66 TTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATT
* ** * * * * * **
19008407 TTCTAAACATTCCATGCTTTGTCTAAATTGTTTTGGTAAATCGCCTCATTTGGTCTAAATTGTTT
131 TTCTAAACATTCCATACTCAG-CGAAATCGTTTTGGTAAATAGCCTCATATAGTCTAAA---TCA
* *
19008472 ACTTTTGGTCTTTGAATTGAA
192 ACTTTTGGTCTTTCAATTAAA
* *
19008493 AACTTATTTACGTGAGAATTGTTAGTCAATTGGA-TCTTGGACAAACTTTCGAACTTGTCAAAAT
1 AACTTATTTACGTGAGAATTGTTTGTCAATT-GATTCTTGGACGAACTTTCGAACTTGTCAAAAT
* * *
19008557 TTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGTA-TCAAGACGATCCATTCCTTCGAGCAAT
65 TTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGATCCATTCCTTAGAGAAAT
* * * * *
19008621 TTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAG-TTTATGATATTGTAA
130 TTTCTAAACATTCCATACTCAGCGAAATCG--T--TTTGG--TAAATAGCCTCAT-ATAGTCTAA
19008684 A-CAACTTTTGGTCTTTCAATTAAA
188 ATCAACTTTTGGTCTTTCAATTAAA
* * * *
19008708 AACTTATTTACGTGAGAATTGTTTGTCTATTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTGTCAATTGATTCTTGGACGAACTTTCGAACTTGTCAAA
19008770 CTAATGGATT
Statistics
Matches: 234, Mismatches: 34, Indels: 19
0.82 0.12 0.07
Matches are distributed among these distances:
213 5 0.02
214 1 0.00
215 117 0.50
216 89 0.38
217 7 0.03
218 3 0.01
219 12 0.05
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (212 bp):
AACTTATTTACGTGAGAATTGTTTGTCAATTGATTCTTGGACGAACTTTCGAACTTGTCAAAATT
TTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGATCCATTCCTTAGAGAAATT
TTCTAAACATTCCATACTCAGCGAAATCGTTTTGGTAAATAGCCTCATATAGTCTAAATCAACTT
TTGGTCTTTCAATTAAA
Found at i:19008875 original size:50 final size:50
Alignment explanation
Indices: 19008796--19008933 Score: 154
Period size: 50 Copynumber: 2.7 Consensus size: 50
19008786 TGCATGACTT
* *
19008796 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATACTGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * *
19008848 GATTTATGATGCATATTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATG-AGAGTTACATAATGCATGTCAG
* *
19008898 TATTTATGATGCAAACTTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACTAA-CATGAGAGTTA
19008934 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
49 1 0.01
50 50 0.68
51 18 0.24
52 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:19009156 original size:17 final size:17
Alignment explanation
Indices: 19009125--19009157 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19009115 CAAACACTTA
19009125 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
19009142 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
19009158 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:19009860 original size:175 final size:175
Alignment explanation
Indices: 19009565--19009912 Score: 473
Period size: 175 Copynumber: 2.0 Consensus size: 175
19009555 GGTCTTTGAA
* *
19009565 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCA
1 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCAAACTTGTCA
* * * *
19009630 AACTTTTAAGAGTTCTTTTATAACATCATTTCCTTTAAGTATTCAAGACGATCCATCCCTTCGAG
66 AACTTTTAAGAGTTCTTCTATAACATCATTTCCTTAAAGTATTAAAGACGATCCATCCCTTAGAG
* **
19009695 CAATTTTCTAAACATTCCATGTTCAGGAAATCACATAATTTGGAT
131 CAATTTTCCAAACATTCCATACTCAGGAAATCACATAATTTGGAT
* ***
19009740 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTTGAACTTGTCA
1 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCAAACTTGTCA
* * * * * *
19009805 AACTTTTACGATTTCTTCTATAACTTCGA-TTCCTTAAAGTGTTAAAGATGATCCATTCCTTAGA
66 AACTTTTAAGAGTTCTTCTATAACATC-ATTTCCTTAAAGTATTAAAGACGATCCATCCCTTAGA
* * * *
19009869 GCAATTTTCCGAACATTTCATACTCAGGAAATCGCATCATTTGG
130 GCAATTTTCCAAACATTCCATACTCAGGAAATCACATAATTTGG
19009913 TCTAAATAGT
Statistics
Matches: 149, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
175 148 0.99
176 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (175 bp):
TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCAAACTTGTCA
AACTTTTAAGAGTTCTTCTATAACATCATTTCCTTAAAGTATTAAAGACGATCCATCCCTTAGAG
CAATTTTCCAAACATTCCATACTCAGGAAATCACATAATTTGGAT
Found at i:19010160 original size:215 final size:215
Alignment explanation
Indices: 19009740--19012219 Score: 2411
Period size: 215 Copynumber: 11.8 Consensus size: 215
19009730 TAATTTGGAT
* **
19009740 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTTGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * * *
19009805 AACTTTTACGATTTCTTCTATAACTTCGATTCCTTAAAGTGTTAAAGATGATCCATTCCTTAGAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * *
19009870 CAATTTTCCGAACATTTCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTATGATATTGT
131 CAATTTTTCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
*
19009935 AAACAACTTTTGGTCTTTAAA
195 AAACAACTTTTGGTCTTTGAA
* * * * *
19009956 TTAAAAACTTATTTACGTGAGAATTGTTTGTCTATTGCTTCTTGGATGAACTTCCAAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
19010021 AACTATTACGAGGTCTTTTATAACTTCAGTTCCTTAAAGAATT-AAGACGATCCATTTCTTTGAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * **
19010085 CAATTTTTCGAACATTTGATGCTCGGGAAATCGCATCTTTTCATCCAAATAGTTTGTCATTTTGT
131 CAATTTTTCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
*
19010150 AAAAAACTTTTGGTCTTT-AA
195 AAACAACTTTTGGTCTTTGAA
* * ** * * *
19010170 TTTAAAAACTTATTTACGTAAGAATTATTTGACTATTGGTTCTTGGCCGAACTTCTGAACTTGTC
1 -TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
19010235 AAACTTTTACGATTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-A
65 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
19010299 TGCAA-TTTTCAGAACATT-CA----C----AT---A--ATTTGGTCCAAATAGTTTGTCATTTT
130 -GCAATTTTTC-GAACATTCCATGCTCGGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTT
19010349 TGTAAACAACTTTTGGTCTTTGAA
192 TGTAAACAACTTTTGGTCTTTGAA
* * * * *
19010373 CTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTAGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
** * * *
19010438 AACTTTTACGAGTTCTTGAATAACTTTGGCTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * ***
19010503 -AAATTTTCTAAACATTCCATGTTAAGGAAATCACATAATTTGGAATAAATAGTTTGTCATTTTG
131 CAATTTTTC-GAACATTCCATGCT-CGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
19010567 TAAACAACTTTTGGTCTTTG-A
194 TAAACAACTTTTGGTCTTTGAA
** * * * * * *
19010588 TT-AAAAGGTATTTACGTGAGAATTGTTCCTCCCTTGTTTCTTGGCCGAACAT-CTAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
19010651 AACTTTTATGAGTTCTTCTATAACATCGG-TCTCTTAAAGCATTCAAGAGGATTCATTCCTTCGA
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTC-CTTAAAGTATTCAAGACGATCCATTCCTTCGA
19010715 GCAA-TTTTCAGAACATT-C--G--C----AT---A--ATTTGGTCCAAAATAGTTTGTCATTTT
130 GCAATTTTTC-GAACATTCCATGCTCGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTT
19010765 GTAAACAACTTTTGGTCTTTGAA
193 GTAAACAACTTTTGGTCTTTGAA
* * * * *
19010788 TTAAAAACTTATTTACATGAGAATTGTTTCTCTGTTGGTTCTTGGATGAATTTCTGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * *
19010853 GAGTTTTACAAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTGGAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
19010918 AAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCACATAGTTTGACATTTTGT
131 CAATTTTTCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
* *
19010983 AAACAACTTTT-TTCTTTGAT
195 AAACAACTTTTGGTCTTTGAA
* * * * * * * *
19011003 TTGAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTCGCCGAACTTTCGAACTTATCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * *
19011068 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAGTTTTCAAAATGATCCATTCCTTCAAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
19011133 CAA-TTTTCTG-A-A---CA---T------TCGCATCAGTTGGAT-CAAATAGTTTTTAATTTTG
131 CAATTTTTC-GAACATTCCATGCTCGGAAATCGCATCATTTGG-TCCAAATAGTTTGTCATTTTG
*
19011182 TATACAACTTTTGGTCTTTGAA
194 TAAACAACTTTTGGTCTTTGAA
** * * * * * * *
19011204 TTAAAAACTTATTTACGTGAGAATTAATTGTTTATTGGTTATTGGTCGAACTTCTGAACTTGTAA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * * *
19011269 AACTTTTACAAGTTCTTTTATAAGTTCAGTTCATTAAAGTATTCTAGACGATCCATTCCTTCCAA
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
19011334 CAAATCTTT-GAACATTCCATGCTCTAGAAATCGCATCATTTGGTCAAAATAGTTTCTCATTTTG
131 C-AATTTTTCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
* *
19011398 TAAATAACATTTGGTCTTTGAA
194 TAAACAACTTTTGGTCTTTGAA
* * * * *
19011420 TTAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTAGGATGAAGTTTCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * *
19011485 AACTTTTACGAGTTCTTATATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTAGAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * * * *
19011550 -ATATTTTCCAAACATTCCTTGGTTGGTAAATCGTATCATTTGGTCCAAATTGTTTCTCATTTTC
131 CA-ATTTTTCGAACATTCCATGCTCGG-AAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
*
19011614 TAAACAAGTTTTGGTCTTTGAA
194 TAAACAACTTTTGGTCTTTGAA
* * * *
19011636 TTAAAAACTTATTTACAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTCTCG
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* ** * * * * *
19011700 AACTTTTATGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAAATGGTCCATTCCATCGAG
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * ** * *
19011765 TAATTTCTCGAACATTCCCTGCTCGAAAAAGAGCAGCATTTTGTCCAAATAGTTAT-TCATTTTG
131 CAATTTTTCGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCCAAATAGTT-TGTCATTTTG
*
19011829 TAAACAACTTTTGGTCTTTGAT
194 TAAACAACTTTTGGTCTTTGAA
* * * * *
19011851 TTAAAAAGTTATTTACGTGAGAATTGTTTCTCCCATGGCTT-TTGGTCGAACTTCTGAACTTGTC
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACTTCCGAACTTGTC
* * * *
19011915 AAACTTTTACGAG---TTTTATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTTGA
65 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* *
19011977 GCAATTTTTAGAACATT-CA----C----AT---A--ATTTGGTCCAAAATAGTTTGTTATTTTG
130 GCAATTTTTCGAACATTCCATGCTCGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTG
*
19012028 TAAACAAGTTTTGGTCTTTGAA
194 TAAACAACTTTTGGTCTTTGAA
** *
19012050 TTAAAAACTTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACATGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * *
19012114 AACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC-AGTCCATTCCTACGA
66 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGA
** * **
19012178 -CTAATTTCCCGAACACTCCATGCTCGGGAAAGAGCATCATTT
130 GC-AATTTTTCGAACATTCCATGCTC-GGAAATCGCATCATTT
19012220 TGTAAACAAC
Statistics
Matches: 1848, Mismatches: 318, Indels: 196
0.78 0.13 0.08
Matches are distributed among these distances:
197 2 0.00
198 64 0.03
199 88 0.05
200 45 0.02
201 230 0.12
202 217 0.12
203 20 0.01
205 1 0.00
206 5 0.00
207 2 0.00
208 1 0.00
209 1 0.00
210 3 0.00
211 2 0.00
212 8 0.00
213 126 0.07
214 52 0.03
215 492 0.27
216 459 0.25
217 30 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTTCGAACATTCCATGCTCGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTA
AACAACTTTTGGTCTTTGAA
Found at i:19011265 original size:416 final size:416
Alignment explanation
Indices: 19009740--19015592 Score: 5362
Period size: 416 Copynumber: 14.1 Consensus size: 416
19009730 TAATTTGGAT
* *
19009740 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTTGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCA
* * * * * * *
19009805 AACTTTTACGATTTCTTCTATAACTTCGATTCCTTAAAGTGTTAAAGATGATCCATTCCTTAGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
19009870 CAATTTTCCGAACATTTCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTATGATATTGT
130 CAATTTTCTG-A-A---C--A-T-------TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
* * * *
19009935 AAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTATTGCTTCTTG
180 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* ** * * * *
19010000 GATGAACTTCCAAACTTGTCAAACTATTACGAGGTCTTTTATAACTTCAGTTCCTTAAAGAATT-
245 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * ** * **
19010064 AAGACGATCCATTTCTTTGAGCAATTTTTCGAACATTTGATGCTCGGGAAATCGCATCTTTTCAT
310 AAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGT
*
19010129 CCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTT-AA
375 CCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * ** * *
19010170 TTTAAAAACTTATTTACGTAAGAATTATTTGACTATTGGTTCTTGGCCGAACTTCTGAACTTGTC
1 -TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* *
19010235 AAACTTTTACGATTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-A
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
19010299 TGCAATTTTCAGAACATTCACATAATTTGGTCCAAATAGTTTGTCATTTTTGTAAACAACTTTTG
129 -GCAATTTTCTGAACATTCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTG
* * *
19010364 GTCTTTGAACTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTT-TC
192 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-
* ** * *
19010428 GAACTAGTCAAACTTTTACGAGTTCTTGAATAACTTTGGCTCCTTAAAGTATTCAAGACGATCCA
256 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * ** * * ***
19010493 TTCCTTCAAGAAATTTTCTAAACATTCCATGTTAAGGAAATCACATAATTTGGAATAAATAGTTT
321 TTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
19010558 GTCATTTTGTAAACAACTTTTGGTCTTTG-A
386 GTCATTTTGTAAACAACTTTTGGTCTTTGAA
** * * * * * *
19010588 TT-AAAAGGTATTTACGTGAGAATTGTTCCTCCCTTGTTTCTTGGCCGAACATCTAACTTGTCAA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAA
* * * * * *
19010652 ACTTTTATGAGTTCTTCTATAACATCGG-TCTCTTAAAGCATTCAAGAGGATTCATTCCTTCGAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTC-CTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
19010716 CAATTTTCAGAACATTCGCATAATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
130 CAATTTTCTGAACATTCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * *
19010781 CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTGTTGGTTCTTGGATGAATTTCTGAA
194 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * *
19010846 CTTGTCAGAGTTTTACAAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTC
259 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
19010911 CTTGGAGAAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCACATAGTTTGAC
324 CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTC
* *
19010976 ATTTTGTAAACAACTTTT-TTCTTTGAT
389 ATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * * *
19011003 TTGAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTCGCCGAACTTTCGAACTTATCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCA
* * * * *
19011068 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAGTTTTCAAAATGATCCATTCCTTCAAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
19011133 CAATTTTCTGAACATTCGCATCAGTTGGAT-CAAATAGTTTTTAATTTTGTATACAACTTTTGGT
130 CAATTTTCTGAACATTCGCATCATTTGG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
** * * * * *
19011197 CTTTGAATTAAAAACTTATTTACGTGAGAATTAATTGTTTATTGGTTATTGGTCGAACTTCTGAA
194 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * *
19011262 CTTGTAAAACTTTTACAAGTTCTTTTATAAGTTCAGTTCATTAAAGTATTCTAGACGATCCATTC
259 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * ** * *
19011327 CTTCCAACAAATCTTT--GAACATTCCATGCTCTAGAAATCGCATCATTTGGTCAAAATAGTTTC
324 CTTCGAGC-AAT-TTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
19011390 TCATTTTGTAAATAACATTTGGTCTTTGAA
387 TCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * *
19011420 TTAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTAGGATGAAGTTTCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCGAACTTGTCA
* * *
19011485 AACTTTTACGAGTTCTTATATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTAGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * * *
19011550 -ATATTTTCCAAACATTCCTTGGTTGGTAAATCGTATCATTTGGTCCAAATTGTTTCTCATTTTC
130 CA-ATTTTCTGAACATT-C-------G-----C--ATCATTTGGTCCAAATAGTTTGTCATTTTG
* *
19011614 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACAT-AGAATTGTTTCTCTCTTGGTTCTT
179 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * ** *
19011678 GGACGAACTTCTGAACTTCTCGAACTTTTATGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATT
244 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * ** ** * *
19011743 CAAAATGGTCCATTCCATCGAGTAA-TTTCTCGAACATTCCCTGCTCGAAAAAGAGCAGCATTTT
309 CAAGACGATCCATTCCTTCGAGCAATTTTC-CAAACATTCCATGCTCGGGAAATCGCATCATTTG
*
19011807 GTCCAAATAGTTAT-TCATTTTGTAAACAACTTTTGGTCTTTGAT
373 GTCCAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * *
19011851 TTAAAAAGTTATTTACGTGAGAATTGTTTCTCCCATGGCTT-TTGGTCGAACTTCTGAACTTGTC
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACTTC-GAACTTGTC
* * * *
19011915 AAACTTTTACGAG---TTTTATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTTGA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
19011977 GCAATTTT-TAGAACATTCACATAATTTGGTCCAAAATAGTTTGTTATTTTGTAAACAAGTTTTG
129 GCAATTTTCT-GAACATTCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTG
** *
19012041 GTCTTTGAATTAAAAACTTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
192 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * *
19012105 AACATGTCAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC-AGTCCA
257 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCA
* * * *
19012169 TTCCTACGA-CTAATTTCCCGAACACTCCATGCTCGGGAAA--G----A----G--C----A---
321 TTCCTTCGAGC-AATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTT
*
19012214 --TCATTTTGTAAACAACTTTTGGTCTTTGAT
385 TGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
19012244 TTAAAAATTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTC
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTC-GAACTTGTC
* * * * * *
19012308 AATCTTTTACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTCAAAACGATCCATTCCTTCGA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
19012373 GTAATTTTCAGAACATTCACTTAATTTGGTCATAAATAGTTTGTCATTTTGTAAACAACTTTTGG
129 GCAATTTTCTGAACATTCGCATCATTTGGTC-CAAATAGTTTGTCATTTTGTAAACAACTTTTGG
**
19012438 TCTTTGAATTAAAAACTTATTTACGAAAGAATTGTTTCTCTCTTGGTTCTTGGAC--A------A
193 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * ** *
19012495 ACTT-CCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
258 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
** * * * * * *
19012559 CCTTCGAGCAATTTTTTAAGCATTCGATGCTCGAGGAATTCTCATCATTTGGTCTAAATAGTTTA
323 CCTTCGAGCAATTTTCCAAACATTCCATGCTCG-GGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
19012624 TGATATTGTAAACAACTTTTGGTCTTTGAA
387 TCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
19012654 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCA
* * * * * *
19012719 AACTTTTATGAGTTCTTTAATAACTTCGATTCCTTAAAGTATTCATGATGATCCATTCCTTCCAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
19012784 CAATTTTCAGAACATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTTGTCATTTTGT
130 CAATTTTCTGAACATT-C--G--C----------ATCATTTGGTCCAAATAGTTTGTCATTTTGT
* * * * *
19012849 AAAAACACTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTT
180 AAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
19012914 --A-G--C--C-GAACTTCTCAAACTTTCACAATTTCTTTTATAACATCGGTTCCTTAAAGTAGT
244 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-T
*
19012971 T-AAGACGATCCATTCCTTC-ATGCAATTTT-TAGAACATT-C--G--C-----AT---A--ATT
308 TCAAGACGATCCATTCCTTCGA-GCAATTTTCCA-AACATTCCATGCTCGGGAAATCGCATCATT
*
19013018 TGGTCCAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAA
371 TGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* **
19013064 TTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTTTCTTCTT-G--G-A---CGAACTTGTCAA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAA
* ** *
19013122 ACTTTTACGAATTCTTTTATAACATT-AATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAG
66 ACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *** *
19013186 CAATTTTCTAAACATTCCGTATTCAGGAAATCGCATAATTTGGGGTAAATGGTTTGTCATTTTGT
130 CAATTTTCTGAACATT-CG----C-----AT--C---ATTTGGTCCAAATAGTTTGTCATTTTGT
* * *
19013251 AAACAACTTTTGGT-TTTTAATTTAAAAAGTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTT
180 AAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * ** * *
19013315 GGACTAACTTCTGAACTTGTCAAACTTGTACGAGTTCTTGAATAACTTTGGTTCCTTAGAGTATT
244 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * * * *
19013380 CAAGATGATCCATTCCATCGAGTAATTTTTCGAACTTTCAATGTTCGAGAAATCGCTTCATTTGG
309 CAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * *
19013445 TCCAAATAGTTTGT-TTTTTGTAAATAACTTTTTGTCTTTGAA
374 TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
*
19013487 TTAAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCA
** * * * *
19013551 AACTTTTACGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTTCATTCCATCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
19013616 TAA-TTTCTAGAACATTCCATGCTCGAAAAAAAGCAGCATTTTGTCCAAATAGCTATT-T-ATTT
130 CAATTTTCT-G-A-A---CAT--TC--------GCATCATTTGGTCCAAATAG-T-TTGTCATTT
* * * * *
19013678 TGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTATTTACGTGAGATTTGTTTCTCCCCTGGTTC
177 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * *
19013743 TTGGCCGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTCTATAAC-TCGGTCCCTTAAAGCA
242 TTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
19013807 TTCAAGATGATCCATTCCTTCGAGCAATTTT-CAGA-A---C--G-T-------TCGCATAATTT
307 TTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTT
*
19013857 GGTCCAAAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAA
372 GGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
** *
19013903 TTAAAAACTTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACATGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCA
* * * *
19013967 AACTTTTACGAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGACGGTCCATTCCTACGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * * ** *
19014032 TAATTTCCCGAACACTC-CATGC--TCGG--GAAAGAG--CATCGTTTTGTAAACAACTTTTGGT
130 CAATTTTCTGAACATTCGCAT-CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * * * *
19014090 CTTTGATTTAAAAATTTATTTACATGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTCCGAA
194 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * * * *
19014155 CTTGTCAATCTTTTACGAGTTCTTCTATAACATCTGTCCCTTAAAGCATT-TAGACAATCCATTC
259 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* *
19014219 CTTCGAGTAATTTT-CAGAACATT-CA----C-----AT---A--ATTTGGTCATAAATAGTTTG
324 CTTCGAGCAATTTTCCA-AACATTCCATGCTCGGGAAATCGCATCATTTGGTC-CAAATAGTTTG
19014268 TCATTTTGTAAACAACTTTTGGTCTTTGAA
387 TCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
19014298 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC--A-----AACTT-TCGA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAA
* ** * * *
19014355 ACTTGTACGAGTTCTTGAATAACTTTGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
19014420 AATTTTTTGAGCATTCCATGCTCGAGGAATTCTCATCATTCGGTCTAAATAGTTTATGATATTGT
131 AATTTTCTGA--A---CAT--TC---G------CATCATTTGGTCCAAATAGTTTGTCATTTTGT
*
19014485 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTCTTG
180 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * * *
19014550 GATGAAGTTCCGAACTTGTCAAACTTTTATGAGTTCTTTAATAACTTCAGTTCCTTAAAGTATTC
245 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* * * * ** * * * *
19014615 ATGATGATCCATTCCTTCCAGCAATTTT-CAGAACATTCCATGTTTAGGAAATTGTATCTTTTCG
310 AAGACGATCCATTCCTTCGAGCAATTTTCCA-AACATTCCATGCTCGGGAAATCGCATCATTTGG
*
19014679 TCCAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAA
374 TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* ** * * * * * * ** *
19014722 TCAAAAACTTATAAACATCAGAATTGATTCTCTCTTGGCTCTTGGACAAACTTCAAAACACGTAA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCA
* ** * *
19014787 AACTTGTACGAGTTCTTAAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAC
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * **
19014852 CAATTTT-TCGAACATTCCAAGCTCGGGGAATCGCATCATTTGGTCTAAATAGTTTATGATACTG
130 CAATTTTCT-G-A-A---C-A--T-------TCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
* *
19014916 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTATTGGTTCTT
179 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
19014981 GGACGAACTTCGGAACTTGTCAAACTTTTACGAGGTCTTTTATAACTTCGGTTCCTTAAAG-AAT
244 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
19015045 CAAGACGATCCATTTCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCTTTTCG
309 CAAGACGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGG
* *
19015110 TCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAT
374 TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * *
19015153 TTAAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTGGCCGAACTTCCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCA
* * * * *
19015218 AACTTTTACGATTTCTATTATAACATCGGTTCCTTAAAGTATTCAAGACGTTCTATTCCTTC-AT
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-
* *
19015282 GCAATTTTCAGAACATTCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
129 GCAATTTTCTGAACATTCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * * *
19015347 CTTTGGATTAAAAAGTTATTTACGTGAGAATAGTTTCTCTCTTGGTTTTTGGACGAA-TTTTCGA
194 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GA
** * * *
19015411 ACTTGTCAAACTTTTACGAGTTCTTGAATAACTTTGGCTCCTTAAAGTATTCAAGACGGTCCATT
258 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * ** * * ***
19015476 CCTTCAAGCAATTTTCTAAACATTCCATGTTAAGGAAATCACATAATTTGGAATAAATAGTTTGT
323 CCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGT
*
19015541 CATTTTGTAAACAACTTTTGGTCTTTGAT
388 CATTTTGTAAACAACTTTTGGTCTTTGAA
*
19015570 TTAAAAAGTTATTTACGT-AGAAT
1 TTAAAAACTTATTTACGTGAGAAT
19015593 CAGATTGACG
Statistics
Matches: 4511, Mismatches: 661, Indels: 515
0.79 0.12 0.09
Matches are distributed among these distances:
387 64 0.01
388 77 0.02
389 11 0.00
392 5 0.00
393 99 0.02
394 4 0.00
395 202 0.04
396 172 0.04
397 38 0.01
398 1 0.00
399 5 0.00
400 9 0.00
401 47 0.01
402 111 0.02
403 4 0.00
404 4 0.00
405 5 0.00
406 2 0.00
407 6 0.00
408 4 0.00
409 192 0.04
410 267 0.06
411 6 0.00
412 3 0.00
413 11 0.00
414 194 0.04
415 319 0.07
416 609 0.14
417 449 0.10
418 91 0.02
419 2 0.00
420 2 0.00
421 2 0.00
422 23 0.01
423 47 0.01
424 124 0.03
425 77 0.02
426 70 0.02
427 3 0.00
428 60 0.01
429 51 0.01
430 188 0.04
431 542 0.12
432 218 0.05
433 77 0.02
434 2 0.00
435 4 0.00
436 2 0.00
437 1 0.00
438 1 0.00
440 1 0.00
441 2 0.00
444 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (416 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
AATTTTCTGAACATTCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACT
TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCAT
TTTGTAAACAACTTTTGGTCTTTGAA
Found at i:19011324 original size:201 final size:201
Alignment explanation
Indices: 19009900--19015500 Score: 3948
Period size: 216 Copynumber: 27.0 Consensus size: 201
19009890 ACTCAGGAAA
* * * * *
19009900 TCGCATCATTTGGTCTAAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTAAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * ** *
19009965 TATTTACGTGAGAATTGTTTGTCTATTGCTTCTTGGATGAACTTCCAAACTTGTCAAACTATTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
* * * * *
19010030 GAGGTCTTTTATAACTTCAGTTCCTTAAAGAATT-AAGACGATCCATTTCTTTGAGCAATTTT-T
131 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
19010093 CGAACATTTGATGCT
196 -GAAC-----A---T
* ** *
19010108 CGGGAAATCGCATCTTTTCATCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTT-AATT
1 -------TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-T
* * ** * *
19010172 TAAAAACTTATTTACGTAAGAATTATTTGACTATTGGTTCTTGGCCGAACTTCTGAACTTGTCAA
58 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* *
19010237 ACTTTTACGATTTCTTTTATAACATCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-ATG
123 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-G
*
19010301 CAATTTTCAGAACAT
187 CAATTTTCTGAACAT
* * *
19010316 TCACATAATTTGGTCCAAATAGTTTGTCATTTTTGTAAACAACTTTTGGTCTTTGAACTAAAAAC
1 TCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * *
19010381 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTT-TCGAACTAGTCAAACTTTT
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTT
** * * * *
19010445 ACGAGTTCTTGAATAACTTTGGCTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
19010510 CTAAACAT
194 CTGAACAT
* ***
19010518 TCCATGTTAAGGAAATCACATAATTTGGAATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
1 T-C--------G------CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
** * * * * *
19010583 TTTG-ATT-AAAAGGTATTTACGTGAGAATTGTTCCTCCCTTGTTTCTTGGCCGAACATCT-AAC
51 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
* * * * * *
19010645 TTGTCAAACTTTTATGAGTTCTTCTATAACATCGG-TCTCTTAAAGCATTCAAGAGGATTCATTC
116 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC-CTTAAAGTATTCAAGACGATCCATTC
*
19010709 CTTCGAGCAATTTTCAGAACAT
180 CTTCGAGCAATTTTCTGAACAT
*
19010731 TCGCATAATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * *
19010796 TTATTTACATGAGAATTGTTTCTCTGTTGGTTCTTGGATGAATTTCTGAACTTGTCAGAGTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
19010861 CAAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTGGAGAAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-
**
19010926 CAAACATTCCATGCT
194 CTGA-A---CA---T
* * * *
19010941 CGGGAAATCGCATCATTTGGTCCACATAGTTTGACATTTTGTAAACAACTTTT-TTCTTTGATTT
1 -------TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
19011005 GAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTCGCCGAACTT-TCGAACTTATCAA
59 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAA
* * * * *
19011069 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAGTTTTCAAAATGATCCATTCCTTCAAGC
123 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
19011134 AATTTTCTGAACAT
188 AATTTTCTGAACAT
* * * *
19011148 TCGCATCAGTTGGAT-CAAATAGTTTTTAATTTTGTATACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGG-TCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
** * * * * * *
19011212 TTATTTACGTGAGAATTAATTGTTTATTGGTTATTGGTCGAACTTCTGAACTTGTAAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * * *
19011277 CAAGTTCTTTTATAAGTTCAGTTCATTAAAGTATTCTAGACGATCCATTCCTTCCAACAAATCTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AA---T
*
19011342 TGAACATTCCATGCTCTAGA-AA
191 T-----TT-C-TG----A-ACAT
* * * *
19011364 TCGCATCATTTGGTCAAAATAGTTTCTCATTTTGTAAATAACATTTGGTCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *
19011429 TATTAACGTGAGAATTGTTTCTCTCTTGGTTCTAGGATGAAGTT-TCGAACTTGTCAAACTTTTA
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTA
* * *
19011493 CGAGTTCTTATATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTAGAG-ATATTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA-ATTTT
**
19011557 CCAAACAT
194 CTGAACAT
*** * * ** * *
19011565 TC-C-TTGGTTGGT--AAATCGTATCATTTGGTCCAAATTGTTTCTCATTTTCTAAACAAGTTTT
1 TCGCATCATTTGGTCCAAA---TA--GTTT-GT-C--A-T-TTTGT-A--AAC--AAC--TTTTG
* ** * * ** *****
19011626 G-GTCTTTGAATTAAAAACT-TATTTACATAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
48 GTCT-TTGAATTAAAAACTTAT-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * ** * * * *
19011689 TGAACTTCTCGAACTTTTATGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAAATGGTCC
111 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* *
19011754 ATTCCATCGAGTAA-TTTCTCGAACAT
176 ATTCCTTCGAGCAATTTTCT-GAACAT
* * * *** * * **
19011780 TC-C--C---TGCTCGAAAAAGAGCAG-CATTTTGTCCAAA-TAGTTATTCAT-TTTG---TAAA
1 TCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGT--AAACAACTT-TTGGTCTTTGAATTAAA
* ** * * * *** *
19011833 CAACTTTTGGTCTTTGATTTAAAAAGTTATTTACGTGAGAATTGTTTCTCCCATGG-CTTTTGGT
62 -AAC---T--TATTT-ACGTGAGAA-TTGTTT-C-T--CTCTTGGTTCT----TGGAC-----G-
* ** * * *
19011897 CGAACTTCTGAACTTGTCAAACTTTTACGAG---TTTTATAACATCGGTCCCTTAAAGCATTCAA
105 -AACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
*
19011959 GACGATCCATTCCTTTGAGCAATTTT-TAGAACAT
168 GACGATCCATTCCTTCGAGCAATTTTCT-GAACAT
* * * *
19011993 TCACATAATTTGGTCCAAAATAGTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
** * *
19012058 TTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACATGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
19012122 TGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC-AGTCCATTCCTACGA-CTAATTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGC-AATTT
* * *
19012185 CCCGAACAC
193 TCTGAACAT
* * * ** * *
19012194 TC-CATGC--TCGG--GAAAGAG--CATCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAT
1 TCGCAT-CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* *
19012252 TTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTCAATCTTTT
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCTGAACTTGTCAAACTTTT
* * * * * *
19012316 ACGAGTTCTTCTATAACATCGGTCCCTTAAAGCATTCAAAACGATCCATTCCTTCGAGTAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
19012381 CAGAACAT
194 CTGAACAT
* * * *
19012389 TCACTTAATTTGGTCATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTC-CAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
** * *
19012454 TTATTTACGAAAGAATTGTTTCTCTCTTGGTTCTTGGAC--A------AACTT-CCAAACTTGTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
** *
19012510 CGAGTTCTTGAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA--TTT
*
19012575 TAAGCATTCGATGCTCGAGGAAT
193 T---C--T-GA------A--CAT
* * * * *
19012598 TCTCATCATTTGGTCTAAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
19012663 TATTTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACTTTTAT
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
* * * * * *
19012728 GAGTTCTTTAATAACTTCGATTCCTTAAAGTATTCATGATGATCCATTCCTTCCAGCAATTTTCA
131 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
19012793 GAACAT
196 GAACAT
* * *
19012799 TCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAACACTTTTGGT
1 T-C--G--C----------ATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGT
* * * *
19012864 CTTTGAAATAAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTT--A-G--C--C-GAA
50 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * *
19012921 CTTCTCAAACTTTCACAATTTCTTTTATAACATCGGTTCCTTAAAGTAGTT-AAGACGATCCATT
115 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATT
19012985 CCTTC-ATGCAATTTT-TAGAACAT
179 CCTTCGA-GCAATTTTCT-GAACAT
* *
19013008 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* **
19013073 TATTTACGAGAGAATTGTTTCTCTCTTTCTTCTT-G--G-A---C-GAACTTGTCAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
* ** *
19013130 GAATTCTTTTATAACATT-AATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCAATTTTC
131 GAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
19013194 TAAACAT
195 TGAACAT
*** *
19013201 TCCGTATTCAGGAAATCGCATAATTTGGGGTAAATGGTTTGTCATTTTGTAAACAACTTTTGGT-
1 T-CG----C-----AT--C---ATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * *
19013265 TTTTAATTTAAAAAGTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACTAACTTCTGAA
51 TTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* ** * * *
19013330 CTTGTCAAACTTGTACGAGTTCTTGAATAACTTTGGTTCCTTAGAGTATTCAAGATGATCCATTC
115 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * *
19013395 CATCGAGTAATTTT-TCGAACTT
180 CTTCGAGCAATTTTCT-GAACAT
** * * * * ** * * ** * *
19013417 TCAATGTTCGAGAAATCGCTTCATTTGGTCCAAATAGTTTGTTTTTTGTAAATAACTTTTTGTCT
1 TC---G--C-ATCATTTGGTCCAAATAGT-----T--TGT-CATTTTGTAAACAACTTTTGGTCT
*
19013482 TTGAATTAAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACT
52 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACT
** * * * *
19013546 TGTCAAACTTTTACGAGTTCTTGAATAACTTTGGTTCCTTAAAGTATTCAAGACGGTTCATTCCA
117 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
*
19013611 TCGAGTAA-TTTCTAGAACATTCCAT
182 TCGAGCAATTTTCT-G-A-A---CAT
* *
19013636 GCTCGAAAAAAAGCAGCATTTTGTCCAAATAGCTATT-T-ATTTTGTAAACAACTTTTGGTCTTT
1 --TC--------GCATCATTTGGTCCAAATAG-T-TTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * * *
19013699 GATTTAAAAAGTTATTTACGTGAGATTTGTTTCTCCCCTGGTTCTTGGCCGAACTTCTGAACTTG
54 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG
* * * *
19013764 TCAAACTTTTACGAGTTCTTCTATAAC-TCGGTCCCTTAAAGCATTCAAGATGATCCATTCCTTC
119 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* *
19013828 GAGCAATTTTCAGAACGT
184 GAGCAATTTTCTGAACAT
* *
19013846 TCGCATAATTTGGTCCAAAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
** * *
19013911 TTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACATGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
19013975 CGAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGACGGTCCATTCCTACGAGTAATTTCC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* *
19014040 CGAACAC
195 TGAACAT
* * * ** * * *
19014047 TC-CATGC--TCGG--GAAAGAG--CATCGTTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAT
1 TCGCAT-CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * *
19014105 TTATTTACATGAGAATTGTTTCTCCCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAATCTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * * * *
19014170 CGAGTTCTTCTATAACATCTGTCCCTTAAAGCATT-TAGACAATCCATTCCTTCGAGTAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
19014234 AGAACAT
195 TGAACAT
* * *
19014241 TCACATAATTTGGTCATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
1 TCGCATCATTTGGTC-CAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * *
19014306 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC--A------AACTT-TCGAACTTGTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
** * * * *
19014362 CGAGTTCTTGAATAACTTTGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
19014427 TGAGCATTCCAT
195 TGA--A---CAT
* * * * *
19014439 GCTCGAGGAATTCTCATCATTCGGTCTAAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTG
1 --TC---G------CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * *
19014504 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGT
55 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGT
* * * * * *
19014569 CAAACTTTTATGAGTTCTTTAATAACTTCAGTTCCTTAAAGTATTCATGATGATCCATTCCTTCC
120 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
*
19014634 AGCAATTTTCAGAACAT
185 AGCAATTTTCTGAACAT
* * * *
19014651 TCCATGTTTAGGAAATTGTATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAATAACTTTTGGTC
1 T-C--------------GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* ** * * * * * **
19014716 TTTGAATCAAAAACTTATAAACATCAGAATTGATTCTCTCTTGGCTCTTGGACAAACTTCAAAAC
51 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
** * * ** *
19014781 ACGTAAAACTTGTACGAGTTCTTAAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCC
116 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
*
19014846 TTCGACCAATTTT-TCGAACATTCCAAGCT
181 TTCGAGCAATTTTCT-G-A-A---C-A--T
* * * **
19014875 CGGGGAATCGCATCATTTGGTCTAAATAGTTTATGATACTGTAAACAACTTTTGGTCTTTGAATT
1 -------TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
19014940 AAAAACTTATTTACGTGAGAATTGTTTGTCTATTGGTTCTTGGACGAACTTCGGAACTTGTCAAA
59 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * *
19015005 CTTTTACGAGGTCTTTTATAACTTCGGTTCCTTAAAG-AATCAAGACGATCCATTTCTTTGAGCA
124 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
*
19015069 ATTTTCCGAACAT
189 ATTTTCTGAACAT
* *
19015082 TCCATGCTCGGGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTC
1 T-C--G--C-----AT--CA---TTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * * *
19015147 TTTGATTTAAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTGGCCGAACTTCCGAAC
51 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
* * * * *
19015212 TTGTCAAACTTTTACGATTTCTATTATAACATCGGTTCCTTAAAGTATTCAAGACGTTCTATTCC
116 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
*
19015277 TTC-ATGCAATTTTCAGAACAT
181 TTCGA-GCAATTTTCTGAACAT
* * *
19015298 TCGCATAATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAGT
1 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * *
19015363 TATTTACGTGAGAATAGTTTCTCTCTTGGTTTTTGGACGAA-TTTTCGAACTTGTCAAACTTTTA
66 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTA
** * * * *
19015427 CGAGTTCTTGAATAACTTTGGCTCCTTAAAGTATTCAAGACGGTCCATTCCTTCAAGCAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
19015492 TAAACAT
195 TGAACAT
19015499 TC
1 TC
19015501 CATGTTAAGG
Statistics
Matches: 4298, Mismatches: 738, Indels: 714
0.75 0.13 0.12
Matches are distributed among these distances:
192 39 0.01
193 220 0.05
194 161 0.04
195 192 0.04
196 19 0.00
197 9 0.00
198 37 0.01
199 63 0.01
200 143 0.03
201 584 0.14
202 295 0.07
203 19 0.00
204 6 0.00
205 13 0.00
206 8 0.00
207 21 0.00
208 249 0.06
209 113 0.03
210 17 0.00
211 8 0.00
212 17 0.00
213 143 0.03
214 173 0.04
215 680 0.16
216 773 0.18
217 228 0.05
218 10 0.00
219 15 0.00
220 14 0.00
221 6 0.00
222 6 0.00
223 9 0.00
224 3 0.00
226 3 0.00
230 1 0.00
231 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (201 bp):
TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
GAACAT
Found at i:19012366 original size:195 final size:196
Alignment explanation
Indices: 19011811--19014443 Score: 1393
Period size: 193 Copynumber: 13.0 Consensus size: 196
19011801 CATTTTGTCC
* * *
19011811 AAATAGTTATTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTATTTACGTGAGAATT
1 AAATAGTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
*
19011876 GTTTCTCCCATGGCTT-TTGG-TCGAACTTCTGAACTTGTCAAACTTTTACGAG-T-TTTATAAC
65 GTTTCTCCCTTGG-TTCTTGGCT-GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTATAAC
* * *
19011937 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGC-AATTTTTAGAACATTCACATAA
128 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-CTAATTTTCAGAACATTCACAT-G
* *
19012001 TTTGGTCCA
191 CTCGG---A
* * **
19012010 AAATAGTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATAT-AGAATT
1 AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * *
19012074 GTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACATGTCAAACTTTTATGAGTTCTTTTATAAC
65 GTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTCAAACTTTTACGAGTTC-TTTATAAC
* * * * * * * * *
19012138 TTTGATTCCTTAAAGTATTCAAGAC-AGTCCATTCCTACGACTAATTTCCCGAACACTC-CATGC
128 ATCGGTCCCTTAAAGCATTCAAGACGA-TCCATTCCTTCGACTAATTTTCAGAACATTCACATGC
*
19012201 TCGGG
192 TCGGA
* ** * *
19012206 AAAGAG-CATCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAATTTATTTACGTGAGAATTG
1 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
*
19012270 TTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAATCTTTTACGAGTTCTTCTATAACAT
66 TTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAACAT
* * * ** *
19012335 CGGTCCCTTAAAGCATTCAAAACGATCCATTCCTTCGAGTAATTTTCAGAACATTCACTTAATTT
130 CGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAATTTTCAGAACATTCACAT-GCTC
19012400 GGTCA
194 GG--A
**
19012405 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAAAGAAT
1 -AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
19012470 TGTTTCTCTCTTGGTTCTT-G--G-A---C-AAACTT-CCAAACTTGTACGAGTTCTTGAATAAC
64 TGTTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAAC
* * * * * *
19012526 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-AATTTTTTAAGCATTCGATGCT
128 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-CTAA--TTTTCAG-A-AC-AT--T
* * *
19012590 CGAGGAATTCTCATCATTTGGTCT
185 C-A--CA-T-GC-TC----GG--A
* * *
19012614 AAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
1 AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
** * * * * *
19012679 GTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACTTTTATGAGTTCTTTAATAACT
65 GTTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT-ATAACA
* * * * * *
19012744 TCGATTCCTTAAAGTATTCATGATGATCCATTCCTTCCAGC-AATTTTCAGAACATTCCATGTTC
129 TCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-CTAATTTTCAGAACATT-CA----C
**
19012808 AGGAAATTGTATCTTTTCGTCC
188 -----A-TG---C---TCG-GA
* *
19012830 AAATAGTTTGTCATTTTGTAAAAACACTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAAT
1 AAATAG-TTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * ** * * *
19012895 TATTTGTCTATTGGTTCTTAGCCGAACTTCTCAAACTT-TCACAA--TTT-C----T-TTTATAA
64 TGTTTCTCCCTTGGTTCTTGGCTGAACTTCT-GAACTTGTCA-AACTTTTACGAGTTCTTTATAA
* * * *
19012951 CATCGGTTCCTTAAAGTAGTT-AAGACGATCCATTCCTTC-A-TGCAATTTTTAGAACATTCGCA
127 CATCGGTCCCTTAAAGCA-TTCAAGACGATCCATTCCTTCGACT--AATTTTCAGAACATTCACA
** * *
19013013 TAATTTGGTCC
189 T-GCTCGG--A
* *
19013024 AAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATT
1 AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* ** *
19013089 GTTTCTCTCTTTCTTCTT-G--G-A---C-GAACTTGTCAAACTTTTACGAATTCTTTTATAACA
65 GTTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTC-TTTATAACA
*** * * *
19013146 TTAATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGC-AATTTTCTA-AACATTCCGTATT
129 TCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-CTAATTTTC-AGAACATT-C--A--
* *
19013209 CAGGAAATCGCATAATTTGGGGT
187 C-----AT-GC------T-CGGA
* * *
19013232 AAATGGTTTGTCATTTTGTAAACAACTTTTGGT-TTTTAATTTAAAAAGTTATTTACGTGAGAAT
1 AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAAT
* * * *
19013296 TGATTCTCTCTTGGTTCTTGGACT-AACTTCTGAACTTGTCAAACTTGTACGAGTTCTTGAATAA
64 TGTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAA
* * * * * * * *
19013360 CTTTGGTTCCTTAGAGTATTCAAGATGATCCATTCCATCGAGTAATTTTTC-GAACTTTCAATGT
127 CATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAA-TTTTCAGAA----C-A--T
* *
19013424 TCGAGAAATCGCTTCATTTGGTCC
184 TC---ACAT-GC-TC----GG--A
** * *
19013448 AAATAGTT-TGTTTTTTGTAAATAACTTTTTGTCTTTGAATTAAAAACTTATTTACGT-AGAATT
1 AAATAGTTGT-CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * *
19013511 GTTTCTCTCTTGGTTCTTGGAC-GAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTGAATAAC
65 GTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAAC
* * * * * * * *
19013575 TTTGGTTCCTTAAAGTATTCAAGACGGTTCATTCCATCGAGTAA-TTTCTAGAACATTC-CATGC
128 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAATTTTC-AGAACATTCACATGC
*
19013638 TCGAA
192 TCGGA
* ** * * * * *
19013643 AAAAAGCAG-CATTTTGTCCAAATAGCTATTT-AT-TTTG---TAAACAACTTTTGGTCTTTGAT
1 AAATAGTTGTCATTTTGT--AAACAACT-TTTGGTCTTTGAATTAAA-AAC---T--TATTT-AC
* * * * *** * * **
19013702 TTAAAAAGTTATTTACGTGAGATTTGTTTCTCCCCTGGTTCTTGGCCGAACTTCTGAACTTGTCA
56 GTGAGAA-TTGTTT-C-T--CCCTTGGTTCT----TGG--C-T-G--AACT-TCTGAACTTGTCA
*
19013767 AACTTTTACGAGTTCTTCTATAAC-TCGGTCCCTTAAAGCATTCAAGATGATCCATTCCTTCGAG
105 AACTTTTACGAGTTCTT-TATAACATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-
* * ** *
19013831 C-AATTTTCAGAACGTTCGCATAATTTGGTCCA
168 CTAATTTTCAGAACATTCACAT-GCTCGG---A
* **
19013863 AAATAGTTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATAT-AGAATT
1 AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * *
19013927 GTTTCTCTCTTGGTTCTTGGAC-GAACTTCCGAACATGTCAAACTTTTACGAGTTATTTTATAAC
65 GTTTCTCCCTTGGTTCTTGG-CTGAACTTCTGAACTTGTCAAACTTTTACGAGTT-CTTTATAAC
* * * * * * * * * *
19013991 TTCGATTCCTTAAAGTATTCAAGACGGTCCATTCCTACGAGTAATTTCCCGAACACTC-CATGCT
128 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAATTTTCAGAACATTCACATGCT
*
19014055 CGGG
193 CGGA
* ** * * * *
19014059 AAAGAG-CATCGTTTTGTAAACAACTTTTGGTCTTTGATTTAAAAATTTATTTACATGAGAATTG
1 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * *
19014123 TTTCTCCCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAATCTTTTACGAGTTCTTCTATAACAT
66 TTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAACAT
* * * * ** *
19014188 CTGTCCCTTAAAGCATT-TAGACAATCCATTCCTTCGAGTAATTTTCAGAACATTCACATAATTT
130 CGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAATTTTCAGAACATTCACAT-GCTC
19014252 GGTCA
194 GG--A
*
19014257 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
1 -AAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
19014322 TGTTTCTCTCTTGGTTCTT-G--G-A---C-AAACTT-TCGAACTTGTACGAGTTCTTGAATAAC
64 TGTTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TATAAC
* * * * ** *
19014378 TTTGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGC-AATTTTTTGAGCATTC-CATGC
128 ATCGGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGA-CTAATTTTCAGAACATTCACATGC
19014441 TCG
192 TCG
19014444 AGGAATTCTC
Statistics
Matches: 1917, Mismatches: 324, Indels: 394
0.73 0.12 0.15
Matches are distributed among these distances:
184 7 0.00
185 3 0.00
186 4 0.00
187 1 0.00
189 1 0.00
190 1 0.00
191 3 0.00
192 47 0.02
193 201 0.10
194 161 0.08
195 199 0.10
196 26 0.01
197 11 0.01
198 58 0.03
199 64 0.03
200 52 0.03
201 177 0.09
202 71 0.04
203 6 0.00
204 2 0.00
205 8 0.00
206 1 0.00
207 11 0.01
208 148 0.08
209 61 0.03
210 11 0.01
211 12 0.01
212 8 0.00
213 3 0.00
214 114 0.06
215 95 0.05
216 152 0.08
217 142 0.07
218 11 0.01
219 4 0.00
220 15 0.01
221 8 0.00
222 8 0.00
223 6 0.00
224 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (196 bp):
AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
TTTCTCCCTTGGTTCTTGGCTGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTATAACATC
GGTCCCTTAAAGCATTCAAGACGATCCATTCCTTCGACTAATTTTCAGAACATTCACATGCTCGG
A
Found at i:19013278 original size:618 final size:617
Alignment explanation
Indices: 19012214--19015586 Score: 3043
Period size: 618 Copynumber: 5.4 Consensus size: 617
19012204 GGAAAGAGCA
* * *
19012214 TCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAATTTATTTACGTGAGAATTGTTTCTCCCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
19012279 TGGTTCTTGGCTGAACTTCT-GAACTTGTCAATCTTTTACGAGTTCTTCTATAACATCGGTCCCT
66 TGGTTCTTGGCCGAACTTCTCAAACTTGTC-A-C----A--AGTTCTTCTATAACATCGGTTCCT
* * * * *
19012343 TAAAGCATTCAAAACGATCCATTCCTTCGAGTAATTTTCAGAACATTCACTTAATTTGGTCATAA
123 TAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTAGAACATTCGCATAATTTGGTC-TAA
*
19012408 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAAAGAATTGT
187 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGT
* * * *
19012473 TTCTCTCTTGGTTCTTGGACAAACTT-CCAAACTTGTACGAGTTCTTGAATAACTTCGGTTCCTT
252 TTCTCTCTTGGTTCTTGGACGAACTTGTCAAACTTTTACGAGTTCTTGTATAACTT-GGTTCCTT
* * * * * *
19012537 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTTAAGCATT-CGATGCTCGAGGAATTCT
316 AAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTCCG-TACTC-AGGAAATCG
* * *
19012601 CATCATTTGGTCTAAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
379 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
19012666 TTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACTTTTATGAG
444 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAG
*
19012731 TTCTTTAATAACTTCGATTCCTTAAAGTATTCATGATGATCCATTCCTTCCAGCAATTTTCAGAA
509 TTCTTTAATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTCAGAA
19012796 CATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTTG
574 CATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTTG
* * * * *
19012840 TCATTTTGTAAAAACACTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTATTTGTCTA
1 TCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
19012905 TTGGTTCTTAGCCGAACTTCTCAAACTT-TCACAATTTCTTTTATAACATCGGTTCCTTAAAGTA
65 TTGGTTCTTGGCCGAACTTCTCAAACTTGTCACAAGTTCTTCTATAACATCGGTTCCTTAAAGTA
* *
19012969 GTT-AAGACGATCCATTCCTTC-ATGCAATTTTTAGAACATTCGCATAATTTGGTCCAAATAGTT
130 -TTCAAGACGATCCATTCCTTCGA-GTAATTTTTAGAACATTCGCATAATTTGGTCTAAATAGTT
*
19013032 TGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTCTCT
193 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTCTCT
** * * ** *
19013097 CTTTCTTCTTGGACGAACTTGTCAAACTTTTACGAATTCTTTTATAACATTAATTCCTTAAAGTA
258 CTTGGTTCTTGGACGAACTTGTCAAACTTTTACGAGTTCTTGTATAAC-TTGGTTCCTTAAAGCA
* * * *
19013162 TTCAAGACGATCCATCCCTTCGAGCAATTTTCTAAACATTCCGTATTCAGGAAATCGCATAATTT
322 TTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTCCGTACTCAGGAAATCGCATCATTT
** * * *
19013227 GGGGTAAATGGTTTGTCATTTTGTAAACAACTTTTGGT-TTTTAATTTAAAAAGTTATTTACGTG
387 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTG
* * * *
19013291 AGAATTGATTCTCTCTTGGTTCTTGGACT-AACTTCTGAACTTGTCAAACTTGTACGAGTTCTTG
451 AGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * *
19013355 AATAACTTTGGTTCCTTAGAGTATTCAAGATGATCCATTCCATCGAGTAATTTTTC-GAACTTTC
515 AATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAA-TTTTCAGAACATTC
* * * *
19013419 AATGTTC-GAGAAATCGCT-TCATTTGGTCCAAATAGTTTG
579 CATGTTCAG-GAAATTG-TATCTTTTCGTCCAAATAGTTTG
* * *
19013458 T-TTTTTGTAAATAACTTTTTGTCTTTGAATTAAAAACTTATTTACGT-AGAATTGTTTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * ** * *
19013521 TGGTTCTTGGACGAACTTTTGAACTTGTCAAACTT-TTACGAGTTCTTGAATAACTTTGGTTCCT
66 TGGTTCTTGG-C---C----GAACTTCTCAAACTTGTCACAAGTTCTTCTATAACATCGGTTCCT
* * * * *
19013585 TAAAGTATTCAAGACGGTTCATTCCATCGAGTAATTTCTAGAACATTCCATGCTCGAAAAAAAGC
123 TAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTAGAACATT-C--G--C-------A-T
* * * *
19013650 AGCATTTTGTCCAAATAGCTATT-T-ATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTA
175 A--ATTTGGTCTAAATAG-T-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
19013713 TTTACGTGAGATTTGTTTCTCCCCTGGTTCTTGGCCGAACTTCTGAACTTGTCAAACTTTTACGA
236 TTTACGAGAGAATTGTTTCTCTCTTGGTTCTT-G--G-A---C-GAACTTGTCAAACTTTTACGA
* * * *
19013778 GTTCTTCTATAACTCGGTCCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTC-AGA
293 GTTCTTGTATAACTTGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAA
* * *
19013842 -A---CG---T-------TCGCATAATTTGGTCCAAAATAGTTTGTTATTTTGTAAACAACTTTT
358 CATTCCGTACTCAGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAACTTTT
** *
19013893 GGTCTTTGAATTAAAAACTTATTTATAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
422 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCC
* * * * *
19013957 GAACATGTCAAACTTTTACGAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGACGGTCCA
487 GAACTTGTCAAACTTTTACGAGTTCTTTAATAACTTCGATTCCTTAAAGTATTCAAGATGATCCA
* * * * * * * *
19014022 TTCCTACGAGTAATTTCCCGAACACTCCATGCTCGGGAAA--G-A-------G--C----A----
552 TTCCTTCCAGCAATTTTCAGAACATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTT
19014067 -
617 G
* * * * *
19014067 TCGTTTTGTAAACAACTTTTGGTCTTTGATTTAAAAATTTATTTACATGAGAATTGTTTCTCCCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
19014132 TGGTTCTTGGCCGAACTTC-CGAACTTGTCAATCTTTTACGAGTTCTTCTATAACATCTGTCCCT
66 TGGTTCTTGGCCGAACTTCTCAAACTTGTC-A-C----A--AGTTCTTCTATAACATCGGTTCCT
* * * * *
19014196 TAAAGCATT-TAGACAATCCATTCCTTCGAGTAATTTTCAGAACATTCACATAATTTGGTCATAA
123 TAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTAGAACATTCGCATAATTTGGTC-TAA
19014260 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-ATGAGAATTG
187 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGA-GAGAATTG
* * * *
19014324 TTTCTCTCTTGGTTCTTGGACAAACTT-TCGAACTTGTACGAGTTCTTGAATAACTTTGGTTCCT
251 TTTCTCTCTTGGTTCTTGGACGAACTTGTCAAACTTTTACGAGTTCTTGTATAAC-TTGGTTCCT
* * * * * * *
19014388 TAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTTTGAGCATTCCATGCTCGAGGAATTCT
315 TAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTCCGTACTC-AGGAAATCG
* * * *
19014453 CATCATTCGGTCTAAATAGTTTATGATATTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
379 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
19014518 TTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACTTTTATGAG
444 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAG
*
19014583 TTCTTTAATAACTTC-AGTTCCTTAAAGTATTCATGATGATCCATTCCTTCCAGCAATTTTCAGA
509 TTCTTTAATAACTTCGA-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTCAGA
*
19014647 ACATTCCATGTTTAGGAAATTGTATCTTTTCGTCCAAATAGTTTG
573 ACATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTTG
* * ** * * *
19014692 TCATTTTGTAAATAACTTTTGGTCTTTGAATCAAAAACTTATAAACATCAGAATTGATTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * ** *
19014757 TGGCTCTTGGACAAACTTCAAAACACGTAAAACTTGT-ACGAGTTCTTAAATAACTTCGGTTCCT
66 TGGTTCTTGGCCGAACTT-------C-TCAAACTTGTCACAAGTTCTTCTATAACATCGGTTCCT
* ** *
19014821 TAAAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCAAGCTCGGGGAATCGC
123 TAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTAGAACATT-C--G--C-----AT---
* * **
19014886 ATCATTTGGTCTAAATAGTTTATGATACTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
175 A--ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * *
19014951 TACGTGAGAATTGTTTGTCTATTGGTTCTTGGACGAACTTCGGAACTTGTCAAACTTTTACGAGG
238 TACGAGAGAATTGTTTCTCTCTTGGTTCTT-G--G-A---C-GAACTTGTCAAACTTTTACGAGT
* * * * * **
19015016 TCTTTTATAACTTCGGTTCCTTAAAG-AATCAAGACGATCCATTTCTTTGAGCAATTTTCCGAAC
295 TCTTGTATAACTT-GGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAAC
* * * * * * *
19015080 ATTCCATGCTCGGGAAATCGCATCTTTTCGTCCAAATAGTTTGTCATTTTGTAAAAAACTTTTGG
359 ATTCCGTACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * **
19015145 TCTTTGATTTAAAAACTTATTTACGTGAGAATTATTTGTCTATTGGTTCTTGGCCGAACTTCCGA
424 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGA
* * * * * *
19015210 ACTTGTCAAACTTTTACGATTTCTATT-ATAACATCGGTTCCTTAAAGTATTCAAGACGTTCTAT
489 ACTTGTCAAACTTTTACGAGTTCT-TTAATAACTTCGATTCCTTAAAGTATTCAAGATGATCCAT
* *
19015274 TCCTT-CATGCAATTTTCAGAACATT-C--G--C-----A---TA--ATTTGGTCCAAATAGTTT
553 TCCTTCCA-GCAATTTTCAGAACATTCCATGTTCAGGAAATTGTATCTTTTCGTCCAAATAGTTT
19015323 G
617 G
* * *
19015324 TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAGTTATTTACGTGAGAATAGTTTCTCTCT
1 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * ** * * *
19015389 TGGTTTTTGGACGAATTTTCGAACTTGTCAAACTT-TTACGAGTTCTTGAATAACTTTGGCTCCT
66 TGGTTCTTGG-C-------CGAACTTCTCAAACTTGTCACAAGTTCTTCTATAACATCGGTTCCT
* * *
19015453 TAAAGTATTCAAGACGGTCCATTCCTTCAAGCAATTTTCTA-AACATTCCATGTTAAGGAAATCA
123 TAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT-TAGAACATT-C--------G------
** * *
19015517 CATAATTTGGAATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGATTTAAAAAGTTAT
172 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
19015582 TTACG
237 TTACG
19015587 TAGAATCAGA
Statistics
Matches: 2252, Mismatches: 328, Indels: 328
0.77 0.11 0.11
Matches are distributed among these distances:
587 23 0.01
588 50 0.02
589 1 0.00
590 1 0.00
592 1 0.00
593 2 0.00
594 2 0.00
595 10 0.00
596 71 0.03
597 1 0.00
598 1 0.00
602 6 0.00
603 62 0.03
604 132 0.06
605 2 0.00
606 1 0.00
607 2 0.00
609 2 0.00
610 71 0.03
611 51 0.02
614 2 0.00
615 22 0.01
616 34 0.02
617 16 0.01
618 291 0.13
619 152 0.07
620 8 0.00
621 1 0.00
622 2 0.00
623 73 0.03
624 2 0.00
625 98 0.04
626 45 0.02
627 65 0.03
628 7 0.00
629 4 0.00
630 126 0.06
631 50 0.02
632 218 0.10
633 1 0.00
634 10 0.00
635 1 0.00
636 3 0.00
637 4 0.00
638 78 0.03
639 4 0.00
640 86 0.04
641 10 0.00
642 3 0.00
643 2 0.00
644 4 0.00
645 42 0.02
646 35 0.02
647 176 0.08
648 51 0.02
649 34 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (617 bp):
TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGCCGAACTTCTCAAACTTGTCACAAGTTCTTCTATAACATCGGTTCCTTAAAGTAT
TCAAGACGATCCATTCCTTCGAGTAATTTTTAGAACATTCGCATAATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTGGTTCCTTAAAGCATTCA
AGATGATCCATTCCTTCGAGCAATTTTCTAAACATTCCGTACTCAGGAAATCGCATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTAATAAC
TTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTCAGAACATTCCATGTTC
AGGAAATTGTATCTTTTCGTCCAAATAGTTTG
Done.