Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 73 of 125
Found at i:22926918 original size:7 final size:7
Alignment explanation
Indices: 22926908--22926950 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
22926898 CGTTCTTCGT
*
22926908 GTTTAGA
1 GTTTAGG
22926915 GTTTAGG
1 GTTTAGG
*
22926922 GTTTAAG
1 GTTTAGG
*
22926929 ATTTAGG
1 GTTTAGG
22926936 GTTTAGG
1 GTTTAGG
22926943 GTTTAGG
1 GTTTAGG
22926950 G
1 G
22926951 GTTATATTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:22934770 original size:25 final size:25
Alignment explanation
Indices: 22934676--22934753 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
22934666 CATAGTAGAG
* *
22934676 TACGCCACAAGGGC--CAAACAGAG
1 TACGCCACAAGGGCATCATACAGAT
* *
22934699 TATGCCACAAGGGAATCATACAGAT
1 TACGCCACAAGGGCATCATACAGAT
*
22934724 TACGCCACAAGGGCGTCATACAGAT
1 TACGCCACAAGGGCATCATACAGAT
22934749 TACGC
1 TACGC
22934754 TGTGAAGGCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
23 12 0.26
25 34 0.74
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (25 bp):
TACGCCACAAGGGCATCATACAGAT
Found at i:22946041 original size:40 final size:41
Alignment explanation
Indices: 22945893--22946048 Score: 129
Period size: 40 Copynumber: 3.8 Consensus size: 41
22945883 ATGTTTAAAT
* ** *
22945893 GGAAGACTCATGTCTCGGGTTGAGTATGAGAATTTATATAAAA
1 GGAAGACTCATGACTCGGAATGAGCATGAGAA-TTATA-AAAA
* * * * *
22945936 GGAAGACTCATAACTCGAAAATGGGCATGAGAAATTGT-TAAA
1 GGAAGACTCATGACTCG-GAATGAGCATGAG-AATTATAAAAA
* * *
22945978 GGAAGACTCATGTCTC-GAGATGAGAATGAG-ATTATACAAA
1 GGAAGACTCATGACTCGGA-ATGAGCATGAGAATTATAAAAA
*
22946018 GGAAGACTCATGACTCGGAATGAGCGTGAGA
1 GGAAGACTCATGACTCGGAATGAGCATGAGA
22946049 TTTTGTTATA
Statistics
Matches: 88, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
39 4 0.05
40 28 0.32
41 11 0.12
42 17 0.19
43 15 0.17
44 11 0.12
45 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (41 bp):
GGAAGACTCATGACTCGGAATGAGCATGAGAATTATAAAAA
Found at i:22946070 original size:85 final size:85
Alignment explanation
Indices: 22945887--22946048 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
22945877 TACTTGATGT
* * *
22945887 TTAAATGGAAGACTCATGTCTCGGGTTGAGTATGAGAATTTATATAAAAGGAAGACTCATAACTC
1 TTAAA-GGAAGACTCATGTCTCGAGATGAGAATGAGAATTTATATAAAAGGAAGACTCATAACTC
*
22945952 GAAAATGGGCATGAGAAATTG
65 GAAAATGAGCATGAGAAATTG
* *
22945973 TTAAAGGAAGACTCATGTCTCGAGATGAGAATGAG-A-TTATA-CAAAGGAAGACTCATGACTCG
1 TTAAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATTTATATAAAAGGAAGACTCATAACTCG
* *
22946035 -GAATGAGCGTGAGA
66 AAAATGAGCATGAGA
22946049 TTTTGTTATA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
81 11 0.16
82 19 0.28
83 5 0.07
84 1 0.01
85 27 0.40
86 5 0.07
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (85 bp):
TTAAAGGAAGACTCATGTCTCGAGATGAGAATGAGAATTTATATAAAAGGAAGACTCATAACTCG
AAAATGAGCATGAGAAATTG
Found at i:22948234 original size:13 final size:13
Alignment explanation
Indices: 22948213--22948275 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
22948203 TTAGCATTGC
*
22948213 TTTTGAAAAGTGT
1 TTTTGAAAAGTGA
* *
22948226 TTTTAAAAAGTGC
1 TTTTGAAAAGTGA
*
22948239 TTTGGAAAAGTGA
1 TTTTGAAAAGTGA
22948252 TTTTGAAAAGT-A
1 TTTTGAAAAGTGA
*
22948264 CTTTGGAAAAGT
1 -TTTTGAAAAGT
22948276 TTGGTTTAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
12 1 0.02
13 41 0.98
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:22948239 original size:26 final size:26
Alignment explanation
Indices: 22948210--22948275 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
22948200 AGTTTAGCAT
* *
22948210 TGCTTTTGAAAAGTGTTTTTAAAAAG
1 TGCTTTGGAAAAGTGATTTTAAAAAG
*
22948236 TGCTTTGGAAAAGTGATTTTGAAAAG
1 TGCTTTGGAAAAGTGATTTTAAAAAG
*
22948262 TACTTTGGAAAAGT
1 TGCTTTGGAAAAGT
22948276 TTGGTTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGCTTTGGAAAAGTGATTTTAAAAAG
Found at i:22949379 original size:201 final size:200
Alignment explanation
Indices: 22949022--22949420 Score: 595
Period size: 201 Copynumber: 2.0 Consensus size: 200
22949012 CTTGGGTGAG
22949022 AATTTGGCTTTCCATAATGATATCCATTTTTCCTTATTTTCAAAAGGTTGAGTCTTCACACTTCA
1 AATTTGGCTTTCCATAATGATATCCATTTTTCCTTATTTTCAAAAGGTTGAGTCTTCACACTTCA
* *
22949087 TGTTGCCACATCGTATGCATTGACCATGGAAAAGTCTCCACCATTCTTATGTTTCTAGCATAAAA
66 TGTTGCCACATCATATGCATTGACCATGGAAAAGTCTCCACCATTCATATGTTTCTAGCATAAAA
* * *
22949152 AATTTCCATTTTCTTCGTTAAAAGAGATTGGAATGCTGAATGTG-ACATTATAAATTTCTTT-AT
131 AATCTCCATTTGCTTCATTAAAAGAGATTGGAATGCT-AA-GTGCACATTATAAATTT-TTTAAT
22949215 GGATTTCT
193 GGATTTCT
* * * * * *
22949223 AATTTTGCTTTCCATAGTGATCTCCATTTTTGCTTGTTTTCAAAAGGTTGAGTCTTCACACTTCT
1 AATTTGGCTTTCCATAATGATATCCATTTTTCCTTATTTTCAAAAGGTTGAGTCTTCACACTTCA
* * * *
22949288 TTTTTCCACATCATATGCATTGACCATGGAAATGTCTCCATCATTCATATGTTTCTAGCATAAAA
66 TGTTGCCACATCATATGCATTGACCATGGAAAAGTCTCCACCATTCATATGTTTCTAGCATAAAA
* * *
22949353 CATCTCTATTTGCTTCATTGAAAGAGATTGGAATGCTAAGTGCACATTATAAATTTTTTAATGGA
131 AATCTCCATTTGCTTCATTAAAAGAGATTGGAATGCTAAGTGCACATTATAAATTTTTTAATGGA
22949418 TTT
196 TTT
22949421 GTATAACACC
Statistics
Matches: 178, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
199 6 0.03
200 23 0.13
201 149 0.84
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (200 bp):
AATTTGGCTTTCCATAATGATATCCATTTTTCCTTATTTTCAAAAGGTTGAGTCTTCACACTTCA
TGTTGCCACATCATATGCATTGACCATGGAAAAGTCTCCACCATTCATATGTTTCTAGCATAAAA
AATCTCCATTTGCTTCATTAAAAGAGATTGGAATGCTAAGTGCACATTATAAATTTTTTAATGGA
TTTCT
Found at i:22959987 original size:16 final size:16
Alignment explanation
Indices: 22959962--22959992 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22959952 TGAATGTGTA
22959962 TTTTTAATAATTTTAT
1 TTTTTAATAATTTTAT
*
22959978 TTTTTTATAATTTTA
1 TTTTTAATAATTTTA
22959993 AAAAATTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTAATAATTTTAT
Found at i:22962630 original size:71 final size:71
Alignment explanation
Indices: 22962432--22962633 Score: 291
Period size: 71 Copynumber: 2.8 Consensus size: 71
22962422 GCCAAAGATA
* *
22962432 GAAAATGGTCCGATGGT-TGAGATCCTGCATTTCTTGCAGATTCTCTATAGCATCGTAAGTCACT
1 GAAAATGGTCCGAT-GTCTGAGATCCTGCATTTGTTGCAGATTCTCTATAGCATCGTGAGTCACT
22962496 GTAAAGT
65 GTAAAGT
* * * *
22962503 GAAACTGGTTCGATGGCTGAGATCCTGCATTTGTTGCAGATTCTCTACAGCATCGTGAGTCACTG
1 GAAAATGGTCCGATGTCTGAGATCCTGCATTTGTTGCAGATTCTCTATAGCATCGTGAGTCACTG
22962568 TAAAGT
66 TAAAGT
* * *
22962574 GAAAAAGGTCCGATGTCTGAGATACTGCATTTGTTGC-GAATTCTCTATGGCATCGTGAGT
1 GAAAATGGTCCGATGTCTGAGATCCTGCATTTGTTGCAG-ATTCTCTATAGCATCGTGAGT
22962634 TATTAAATGT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
70 2 0.02
71 114 0.98
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (71 bp):
GAAAATGGTCCGATGTCTGAGATCCTGCATTTGTTGCAGATTCTCTATAGCATCGTGAGTCACTG
TAAAGT
Found at i:22962775 original size:114 final size:114
Alignment explanation
Indices: 22962591--22962897 Score: 438
Period size: 114 Copynumber: 2.7 Consensus size: 114
22962581 GTCCGATGTC
* * *
22962591 TGAGATACTGCATTTGTTGCGAATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATCCG
1 TGAGATTCTACATTTGTTGCGGATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATCCG
*
22962656 AGTATGGATTACAGGGCCTAAGATGGCCAAGATAAAAAGGTTCAAAT-AT
66 AGTATGGATTACAGGGCCTAAGATAGCCAAGATAAAAAGG-TCAAATGAT
* *
22962705 TGAGA-TCTTACATTTGTTACGGATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATTC
1 TGAGATTC-TACATTTGTTGCGGATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATCC
* ** *
22962769 GAGTATGAATTACAGGGCCTAAGATAGCCAAGATAAAAAGGTCCGATGTT
65 GAGTATGGATTACAGGGCCTAAGATAGCCAAGATAAAAAGGTCAAATGAT
* * * *
22962819 TGAGATTCTGCATTTGTTGCTGATTCTCTATGGCATCATGAGTTATTAAATGTGAGATGAATCCG
1 TGAGATTCTACATTTGTTGCGGATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATCCG
*
22962884 AGAATGGATATACA
66 AGTATGGAT-TACA
22962898 ATTGGTTTGG
Statistics
Matches: 171, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
113 5 0.03
114 160 0.94
115 6 0.04
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (114 bp):
TGAGATTCTACATTTGTTGCGGATTCTCTATGGCATCGTGAGTTATTAAATGTGAAATGAATCCG
AGTATGGATTACAGGGCCTAAGATAGCCAAGATAAAAAGGTCAAATGAT
Found at i:22965462 original size:29 final size:30
Alignment explanation
Indices: 22965409--22965467 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
22965399 GAATTGGATC
* *
22965409 AAATCAAAATTTTATGTATAAAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
*
22965439 AAATCAAAA-TTCATATATACAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
22965468 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTGCACA
Found at i:22968802 original size:28 final size:28
Alignment explanation
Indices: 22968740--22968806 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
22968730 TTTAATATAT
* *
22968740 TATATTTTTATAATTTTAAAAGATTAAA
1 TATAATTTTATAATGTTAAAAGATTAAA
* *
22968768 T-TAAATTTTATAATGTTAAAGGATTAAG
1 TAT-AATTTTATAATGTTAAAAGATTAAA
22968796 TATAATTTTAT
1 TATAATTTTAT
22968807 TTTTATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.03
28 31 0.94
29 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.49
Consensus pattern (28 bp):
TATAATTTTATAATGTTAAAAGATTAAA
Found at i:22973731 original size:23 final size:22
Alignment explanation
Indices: 22973692--22973734 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
22973682 TGAAATGCAT
* *
22973692 GATTAATGAATTTCATGAAAAA
1 GATTAATAAATTACATGAAAAA
22973714 GATTGAATAAATTACATGAAA
1 GATT-AATAAATTACATGAAA
22973735 TTATAATAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.30
Consensus pattern (22 bp):
GATTAATAAATTACATGAAAAA
Found at i:22974347 original size:28 final size:28
Alignment explanation
Indices: 22974294--22974420 Score: 129
Period size: 28 Copynumber: 4.6 Consensus size: 28
22974284 CTCTAGATAT
22974294 GGAAGCCTTTGT-G-TAAACTT-TGTAAA
1 GGAAGCCTTTGTGGCTAAA-TTCTGTAAA
*
22974320 GGAAGCCATTGTGGCTAAATTCTGTAAA
1 GGAAGCCTTTGTGGCTAAATTCTGTAAA
* * *
22974348 GTAAACCTTTATGGCTAAATTCTGTAAA
1 GGAAGCCTTTGTGGCTAAATTCTGTAAA
* *
22974376 GTTAAGCCTTTGTGGC-GAATATCTG-AAA
1 G-GAAGCCTTTGTGGCTAAAT-TCTGTAAA
22974404 GGAAAGCCTTTGTGGCT
1 GG-AAGCCTTTGTGGCT
22974421 GATAACAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
26 11 0.13
27 3 0.04
28 55 0.65
29 16 0.19
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (28 bp):
GGAAGCCTTTGTGGCTAAATTCTGTAAA
Found at i:22974414 original size:57 final size:56
Alignment explanation
Indices: 22974314--22974420 Score: 128
Period size: 57 Copynumber: 1.9 Consensus size: 56
22974304 GTGTAAACTT
* *
22974314 TGTAAAGGAAGCCATTGTGGCTAAATTCTGTAAAGTAAACCTTTATGGCTAAATTC
1 TGTAAAGGAAGCCATTGTGGCGAAATTCTGTAAAGGAAACCTTTATGGCTAAATTC
* * *
22974370 TGTAAAGTTAAGCCTTTGTGGCG-AATATCTG-AAAGGAAAGCCTTTGTGGCT
1 TGTAAAG-GAAGCCATTGTGGCGAAAT-TCTGTAAAGGAAA-CCTTTATGGCT
22974421 GATAACAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 17 0.40
57 26 0.60
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (56 bp):
TGTAAAGGAAGCCATTGTGGCGAAATTCTGTAAAGGAAACCTTTATGGCTAAATTC
Found at i:22974432 original size:28 final size:29
Alignment explanation
Indices: 22974379--22974448 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
22974369 CTGTAAAGTT
* **
22974379 AAGCCTTTGTGGC-GAATATCTGAAAGGA
1 AAGCCTTTGTGGCTGAATAACAAAAAGGA
22974407 AAGCCTTTGTGGCTG-ATAACAAAAAGGA
1 AAGCCTTTGTGGCTGAATAACAAAAAGGA
*
22974435 AAGCCTTCGTGGCT
1 AAGCCTTTGTGGCT
22974449 AACTAGGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (29 bp):
AAGCCTTTGTGGCTGAATAACAAAAAGGA
Found at i:22977449 original size:19 final size:19
Alignment explanation
Indices: 22977425--22977463 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
22977415 TTTTTATTAT
22977425 AATTATGTTTTGTTGAATA
1 AATTATGTTTTGTTGAATA
22977444 AATTATGTTTTGTTGAATA
1 AATTATGTTTTGTTGAATA
22977463 A
1 A
22977464 TGCTAAGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
AATTATGTTTTGTTGAATA
Found at i:22981251 original size:28 final size:28
Alignment explanation
Indices: 22981161--22981266 Score: 90
Period size: 28 Copynumber: 3.8 Consensus size: 28
22981151 TATCTTTTGT
* *
22981161 GGAAGTCTGCCAAGACTATCTAAATATC
1 GGAAGTCTGTCAAGACTATCTAAATATG
* * * ** *
22981189 GAAACTCTGTCAGGAAAATCTAAATGTG
1 GGAAGTCTGTCAAGACTATCTAAATATG
*
22981217 GG-AGTCTGACAAGACTATCTAAA-ATTG
1 GGAAGTCTGTCAAGACTATCTAAATA-TG
* *
22981244 GGAAGTCTGTTAGGACTATCTAA
1 GGAAGTCTGTCAAGACTATCTAA
22981267 CATGGAGAAA
Statistics
Matches: 58, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
27 20 0.34
28 38 0.66
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (28 bp):
GGAAGTCTGTCAAGACTATCTAAATATG
Found at i:22981265 original size:55 final size:54
Alignment explanation
Indices: 22981131--22981266 Score: 130
Period size: 55 Copynumber: 2.5 Consensus size: 54
22981121 GTTATTGTAT
*** ** *
22981131 ATTGGGAAGTCCACTAGGACTATCT-TTTGTGGAAGTCTGCCAAGACTATCTAA
1 ATTGGGAAGTCTGTTAGGACTATCTAAATGTGGAAGTCTGACAAGACTATCTAA
* * * * ** *
22981184 ATATCGAAACTCTGTCAGGAAAATCTAAATGTGGGAGTCTGACAAGACTATCTAAA
1 AT-TGGGAAGTCTGTTAGGACTATCTAAATGTGGAAGTCTGACAAGACTATCT-AA
22981240 ATTGGGAAGTCTGTTAGGACTATCTAA
1 ATTGGGAAGTCTGTTAGGACTATCTAA
22981267 CATGGAGAAA
Statistics
Matches: 61, Mismatches: 19, Indels: 4
0.73 0.23 0.05
Matches are distributed among these distances:
53 2 0.03
54 14 0.23
55 41 0.67
56 4 0.07
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (54 bp):
ATTGGGAAGTCTGTTAGGACTATCTAAATGTGGAAGTCTGACAAGACTATCTAA
Found at i:22983157 original size:21 final size:23
Alignment explanation
Indices: 22983133--22983178 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
22983123 AAATTTTTAT
*
22983133 AAATGGTGTTTTG-AATA-AGAA
1 AAATGGTGTTTGGAAATAGAGAA
22983154 AAATGGTGTTTGGAAATAGAGAA
1 AAATGGTGTTTGGAAATAGAGAA
22983177 AA
1 AA
22983179 TGAGGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.55
22 4 0.18
23 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (23 bp):
AAATGGTGTTTGGAAATAGAGAA
Found at i:22985855 original size:29 final size:30
Alignment explanation
Indices: 22985819--22985883 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
22985809 GTACAAAGTG
*
22985819 TGATAACTGTAA-CACCGATACAAAGTACC
1 TGATAACTGTAATCACCGACACAAAGTACC
* * *
22985848 TGATAACTGTAATCACTGACACATAGTGCC
1 TGATAACTGTAATCACCGACACAAAGTACC
22985878 TGATAA
1 TGATAA
22985884 ACCCTATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 12 0.39
30 19 0.61
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (30 bp):
TGATAACTGTAATCACCGACACAAAGTACC
Found at i:22990173 original size:16 final size:15
Alignment explanation
Indices: 22990150--22990184 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
22990140 TATATAACAG
22990150 TATATATGCATAAATA
1 TATATATGCATAAA-A
*
22990166 TATATATGTATAAAA
1 TATATATGCATAAAA
22990181 TATA
1 TATA
22990185 CAATTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (15 bp):
TATATATGCATAAAA
Found at i:22992179 original size:20 final size:21
Alignment explanation
Indices: 22992142--22992180 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22992132 AAACCGAGCA
*
22992142 TCACTGAGTTAGAAAATGCAG
1 TCACTAAGTTAGAAAATGCAG
22992163 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTAGAAAATGC
22992181 TAAAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (21 bp):
TCACTAAGTTAGAAAATGCAG
Found at i:22992195 original size:13 final size:13
Alignment explanation
Indices: 22992177--22992201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22992167 TAAGTTAAAA
22992177 ATGCTAAAAATGC
1 ATGCTAAAAATGC
22992190 ATGCTAAAAATG
1 ATGCTAAAAATG
22992202 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:22993231 original size:3 final size:3
Alignment explanation
Indices: 22993225--22993255 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
22993215 CTCCTCCTCC
*
22993225 TCA TCA TCA TCA TCA TCA TCA TTA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
22993256 TAGAATCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:23000435 original size:15 final size:16
Alignment explanation
Indices: 23000395--23000435 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
23000385 TTACTAATTT
23000395 AAAATTTTATAAATTAA
1 AAAATTTT-TAAATTAA
*
23000412 AAAAATTTTAAA-TAA
1 AAAATTTTTAAATTAA
23000427 AAAATTTTT
1 AAAATTTTT
23000436 GACTGAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 11 0.50
16 4 0.18
17 7 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATTTTTAAATTAA
Found at i:23002798 original size:19 final size:20
Alignment explanation
Indices: 23002758--23002798 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
23002748 AATATAAAAC
*
23002758 ATATCTATTTATATATTATA
1 ATATCTATTTATAAATTATA
23002778 ATAT-TATTTATTAAATT-TA
1 ATATCTATTTA-TAAATTATA
23002797 AT
1 AT
23002799 TAACTGATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATCTATTTATAAATTATA
Found at i:23012194 original size:27 final size:27
Alignment explanation
Indices: 23012164--23012217 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
23012154 TGGTGATGAG
23012164 AAGAAAGAGACAGTAAAAAAATATCTT
1 AAGAAAGAGACAGTAAAAAAATATCTT
23012191 AAGAAAGAGACAGTAAAAAAATATCTT
1 AAGAAAGAGACAGTAAAAAAATATCTT
23012218 CTTTCTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.19
Consensus pattern (27 bp):
AAGAAAGAGACAGTAAAAAAATATCTT
Found at i:23013644 original size:24 final size:24
Alignment explanation
Indices: 23013612--23013711 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
23013602 TAATGTTTCT
* *
23013612 CGTATTCATGTTGACGAGCATAAA
1 CGTATTCATGCTGACGAGCGTAAA
*
23013636 CGTATTCATGCTGACGAGTGTAAA
1 CGTATTCATGCTGACGAGCGTAAA
23013660 CGTATTCATGCTTG-CGAGCGTAAA
1 CGTATTCATGC-TGACGAGCGTAAA
*
23013684 CGTATTCATGCTGAAGAGCGTAAA
1 CGTATTCATGCTGACGAGCGTAAA
23013708 CGTA
1 CGTA
23013712 ATAAACTTGC
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
23 2 0.03
24 65 0.94
25 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (24 bp):
CGTATTCATGCTGACGAGCGTAAA
Found at i:23019096 original size:46 final size:45
Alignment explanation
Indices: 23019029--23019120 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 45
23019019 AACCATTAAC
23019029 GAAAAGGTTTAATTGACTATTTTAATTAACTGTAGAGACATAATT
1 GAAAAGGTTTAATTGACTATTTTAATTAACTGTAGAGACATAATT
* * * * *
23019074 GAAAAGAGTTTAATTGATTATTTTAGTTAATTGTAGGGACGTAATT
1 GAAAAG-GTTTAATTGACTATTTTAATTAACTGTAGAGACATAATT
23019120 G
1 G
23019121 TATGTGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 6 0.15
46 35 0.85
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (45 bp):
GAAAAGGTTTAATTGACTATTTTAATTAACTGTAGAGACATAATT
Found at i:23019348 original size:3 final size:3
Alignment explanation
Indices: 23019340--23019364 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
23019330 ATTAATCATG
23019340 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
23019365 TATTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:23019369 original size:3 final size:3
Alignment explanation
Indices: 23019363--23019392 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
23019353 AATAATAATA
23019363 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23019393 TCAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23019858 original size:24 final size:23
Alignment explanation
Indices: 23019816--23019864 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
23019806 TTCATTGAAG
23019816 AATTAAAAATCAAATTTAACTAA
1 AATTAAAAATCAAATTTAACTAA
*
23019839 AATTATAAAATTCAAA-TTAAGTAA
1 AATTA-AAAA-TCAAATTTAACTAA
23019863 AA
1 AA
23019865 AAATATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (23 bp):
AATTAAAAATCAAATTTAACTAA
Found at i:23022700 original size:42 final size:42
Alignment explanation
Indices: 23022573--23022684 Score: 197
Period size: 42 Copynumber: 2.7 Consensus size: 42
23022563 AAAAAAGAAA
*
23022573 GAGAAAAGCATCAGATAAGTTGGCTCCACTAATCCCAATTTT
1 GAGAAAAGCATCAGATAAGTTGGCTCCACTAATCCCAAATTT
23022615 GAGAAAAGCATCAGATAAGTTGGCTCCACTAATCCCAAATTT
1 GAGAAAAGCATCAGATAAGTTGGCTCCACTAATCCCAAATTT
* *
23022657 GAGAAAAGCATCAGTTTAGTTGGCTCCA
1 GAGAAAAGCATCAGATAAGTTGGCTCCA
23022685 TTAAGATCGA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (42 bp):
GAGAAAAGCATCAGATAAGTTGGCTCCACTAATCCCAAATTT
Found at i:23025557 original size:2 final size:2
Alignment explanation
Indices: 23025550--23025577 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23025540 ACAATGCACT
23025550 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23025578 GGGGGGGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23026073 original size:2 final size:2
Alignment explanation
Indices: 23026066--23026095 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
23026056 TGCATGACAC
*
23026066 CT CT CT CT CT CT CT CT CT CT CT CT CG CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
23026096 AAAAGACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
CT
Found at i:23027008 original size:2 final size:2
Alignment explanation
Indices: 23027003--23027035 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23026993 GATCTCTCAT
23027003 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
23027036 TTTTTTTCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:23027923 original size:24 final size:25
Alignment explanation
Indices: 23027883--23027939 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
23027873 ATATTTTTAT
23027883 TTTATTATTTTAATATTTAAT-AAA
1 TTTATTATTTTAATATTTAATGAAA
* *
23027907 TTTATATATTTT-TTATTTATTGAAA
1 TTTAT-TATTTTAATATTTAATGAAA
*
23027932 TTTTTTAT
1 TTTATTAT
23027940 ATAATTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATTATTTTAATATTTAATGAAA
Found at i:23049434 original size:40 final size:40
Alignment explanation
Indices: 23049361--23049437 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
23049351 AACACACTAG
* *
23049361 AATGGCACTCAGTGCCTCATCGGATAGTTCGAAGTAATAA
1 AATGACACTCAGTGCCTCATCGGATAGTCCGAAGTAATAA
* *
23049401 AATGACACTCAGTGTCTCATCGGCCTAG-CCGAAGTAA
1 AATGACACTCAGTGCCTCATCGG-ATAGTCCGAAGTAA
23049438 AGTGGTACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (40 bp):
AATGACACTCAGTGCCTCATCGGATAGTCCGAAGTAATAA
Found at i:23049498 original size:41 final size:40
Alignment explanation
Indices: 23049390--23049501 Score: 104
Period size: 37 Copynumber: 2.8 Consensus size: 40
23049380 TCGGATAGTT
* *
23049390 CGAAGTAATAAAATGACACTCAGTGTCTCATCG-GCCTAGC
1 CGAAGTAA-AAAATGACACCCAGTGTCTCATCGAACCTAGC
* ** ** * *
23049430 CGAAGT--AAAGTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAAAAAATGACACCCAGTGTCTCATCGAACCTAGC
23049468 CGAAGTAAAATAATGACACCCAGTGTCTCATCGA
1 CGAAGTAAAA-AATGACACCCAGTGTCTCATCGA
23049502 CTCAAGGTCG
Statistics
Matches: 54, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
37 18 0.33
38 10 0.19
40 8 0.15
41 18 0.33
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (40 bp):
CGAAGTAAAAAATGACACCCAGTGTCTCATCGAACCTAGC
Found at i:23049629 original size:12 final size:12
Alignment explanation
Indices: 23049604--23049637 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23049594 ACAATTCATA
23049604 TCACTTTCAATT
1 TCACTTTCAATT
* *
23049616 TCAATTTCACTT
1 TCACTTTCAATT
23049628 TCACTTTCAA
1 TCACTTTCAA
23049638 CTTTGATCAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (12 bp):
TCACTTTCAATT
Found at i:23062191 original size:14 final size:15
Alignment explanation
Indices: 23062172--23062200 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23062162 CGATGCATTT
23062172 TTTATTT-ACTTTTA
1 TTTATTTCACTTTTA
23062186 TTTATTTCACTTTTA
1 TTTATTTCACTTTTA
23062201 CTTTTGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTTCACTTTTA
Found at i:23064386 original size:24 final size:24
Alignment explanation
Indices: 23064352--23064403 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
23064342 TTGGTACGAC
* * *
23064352 GGATAAGAAGAGAAAAAGGCACAA
1 GGATAAAAAGAAAAAAAAGCACAA
*
23064376 GGATAAAAAGAAAAAAAAGCACCA
1 GGATAAAAAGAAAAAAAAGCACAA
23064400 GGAT
1 GGAT
23064404 GAGGGTGAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.25, T:0.06
Consensus pattern (24 bp):
GGATAAAAAGAAAAAAAAGCACAA
Found at i:23075128 original size:9 final size:9
Alignment explanation
Indices: 23075116--23075166 Score: 61
Period size: 9 Copynumber: 5.9 Consensus size: 9
23075106 AAAATTCACA
23075116 AAAAGAAAG
1 AAAAGAAAG
23075125 AAAAGAAAG
1 AAAAGAAAG
*
23075134 AAGAG-AAG
1 AAAAGAAAG
*
23075142 AAAAGAAAA
1 AAAAGAAAG
*
23075151 AAAAAAAAG
1 AAAAGAAAG
23075160 -AAAGAAA
1 AAAAGAAA
23075167 TATATAGCCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
8 13 0.37
9 22 0.63
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:23079036 original size:17 final size:17
Alignment explanation
Indices: 23079014--23079049 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23079004 ATGCATTTTA
23079014 TTTATTTGTCACTGCAT
1 TTTATTTGTCACTGCAT
* *
23079031 TTTATTTGTTAGTGCAT
1 TTTATTTGTCACTGCAT
23079048 TT
1 TT
23079050 GCATTGTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.14, T:0.58
Consensus pattern (17 bp):
TTTATTTGTCACTGCAT
Found at i:23079652 original size:5 final size:5
Alignment explanation
Indices: 23079632--23079680 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
23079622 AAAATTCACA
*
23079632 AAAAG -AAAG AAAAAG AAAAG AAGAAG AAAAG AAAAA AAAAG AAAAG AAA
1 AAAAG AAAAG -AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG AAAAG AAA
23079681 TATATCGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 4 0.10
5 26 0.67
6 9 0.23
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:23084428 original size:14 final size:14
Alignment explanation
Indices: 23084409--23084444 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
23084399 GAAAAATAAG
*
23084409 TCATTTTCCAGAAA
1 TCATTTTCCAAAAA
23084423 TCATTTTCCAAAAA
1 TCATTTTCCAAAAA
*
23084437 TTATTTTC
1 TCATTTTC
23084445 AGTAAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.44
Consensus pattern (14 bp):
TCATTTTCCAAAAA
Found at i:23087561 original size:21 final size:20
Alignment explanation
Indices: 23087535--23087583 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
23087525 GGTTTTAGGA
23087535 TTTGGGTATTGGGTCAAAAG-G
1 TTTGGGT-TT-GGTCAAAAGTG
*
23087556 TTTGGGTTTGTTCAAAAGTG
1 TTTGGGTTTGGTCAAAAGTG
23087576 TTTGGGTT
1 TTTGGGTT
23087584 AGGTTCAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 8 0.31
20 11 0.42
21 7 0.27
ACGTcount: A:0.18, C:0.04, G:0.35, T:0.43
Consensus pattern (20 bp):
TTTGGGTTTGGTCAAAAGTG
Found at i:23087593 original size:20 final size:19
Alignment explanation
Indices: 23087543--23087592 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
23087533 GATTTGGGTA
*
23087543 TTGGGTCAAAAGGTTTGGG
1 TTGGTTCAAAAGGTTTGGG
*
23087562 TTTGTTCAAAAGTGTTTGGG
1 TTGGTTCAAAAG-GTTTGGG
23087582 TTAGGTTCAAA
1 TT-GGTTCAAA
23087593 GGGATTTAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 10 0.38
20 9 0.35
21 7 0.27
ACGTcount: A:0.24, C:0.06, G:0.32, T:0.38
Consensus pattern (19 bp):
TTGGTTCAAAAGGTTTGGG
Found at i:23094817 original size:489 final size:489
Alignment explanation
Indices: 23093899--23094818 Score: 1621
Period size: 489 Copynumber: 1.9 Consensus size: 489
23093889 TTACATTTAC
*
23093899 ACAACTCAATCTCAATCATAACATTTTCATATCACAACATAATCGTCACATTAATAATAAATCGC
1 ACAACTCAACCTCAATCATAACATTTTCATATCACAACATAATCGTCACATTAATAATAAATCGC
23093964 AATACAACATACATTCACATATGACACAACACCTCCACAATAGGTTATGTTACAGTTAGAAACAC
66 AATACAACATACATTCACATATGACACAACACCTCCACAATAGGTTATGTTACAGTTAGAAACAC
*
23094029 ACCTCTAGGAAGCAGAAACTCTAACGACGAGGAGGTCATCCACCACGCACTGATCGAGTACTCGG
131 ACCTCTAGGAAGCAGAAACTCTAACGACGAGGAGGTCATCCACCACGCACTGATCGAGTACCCGG
* *
23094094 TCTAATAGGATTACATCCTACAAACACAACTAAAGATTAACACTATTCCTAGTCACCACTTAAAC
196 TCTAACAAGATTACATCCTACAAACACAACTAAAGATTAACACTATTCCTAGTCACCACTTAAAC
* ** *
23094159 GCAAAACTTAATTAAAAATAACTCACGTGCAACTCTTGGAACCAGTGCAGGAGTAGGTTGCACAG
261 GCAAAACATAATTAAAAATAACTCACGTGCAACTCTCAGAACCAGTGCAGGAGTAGATTGCACAG
*
23094224 GTCGAGGAGGAGGTAAATCGTCAGCCTCGGAGTCGTGATCACCTAAACACAAATACCTCACATTA
326 GTCGAGGAGGAGCTAAATCGTCAGCCTCGGAGTCGTGATCACCTAAACACAAATACCTCACATTA
23094289 GATTTCTCAAATTAAATCTCTAAATAACTCTAAGTACGAAATCAAAGATAAAACAGTCAAAACAA
391 GATTTCTCAAATTAAATCTCTAAATAACTCTAAGTACGAAATCAAAGATAAAACAGTCAAAACAA
23094354 GGCTTTCGAGTTTGAATTTGATAAAACAGTCAAA
456 GGCTTTCGAGTTTGAATTTGATAAAACAGTCAAA
23094388 ACAACTCAACCTCAATCATAACATTTTCATATCACAACATAATCGTCACATTAATAATAAATCGC
1 ACAACTCAACCTCAATCATAACATTTTCATATCACAACATAATCGTCACATTAATAATAAATCGC
23094453 AATACAACATACATTCACATATGACACAACACCTCCACAATAGGTTATGTTACAGTTAGAAACAC
66 AATACAACATACATTCACATATGACACAACACCTCCACAATAGGTTATGTTACAGTTAGAAACAC
* **
23094518 ACCTCTAGGAAGCAGAAACTCTAACGATGAGGAGGTTGTCCACCACGCACTGATCGAGTACCCGG
131 ACCTCTAGGAAGCAGAAACTCTAACGACGAGGAGGTCATCCACCACGCACTGATCGAGTACCCGG
* *
23094583 TCTAACAAGATTACATCCTACAAACACAATTAAAGATTAACATTATTCCTAGTCACCACTTAAAC
196 TCTAACAAGATTACATCCTACAAACACAACTAAAGATTAACACTATTCCTAGTCACCACTTAAAC
*
23094648 GCAAAACATAATTAAAAATAACTCACGTGCAACTCTCAGAATC-GATGCAGGAGTAGATTGCACA
261 GCAAAACATAATTAAAAATAACTCACGTGCAACTCTCAGAACCAG-TGCAGGAGTAGATTGCACA
* * *
23094712 TGTGGAGGAGGAGCTAAATCGTCTA-CCTCGGAGTCGTGATCACCTAAACACAAATACCTTACAT
325 GGTCGAGGAGGAGCTAAATCGTC-AGCCTCGGAGTCGTGATCACCTAAACACAAATACCTCACAT
*
23094776 TAGATTTGC-CAAATTAAATCTCTGAATAACTCTAAGTACGAAA
389 TAGATTT-CTCAAATTAAATCTCTAAATAACTCTAAGTACGAAA
23094819 ACGAACAGAC
Statistics
Matches: 409, Mismatches: 19, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
488 1 0.00
489 406 0.99
490 2 0.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (489 bp):
ACAACTCAACCTCAATCATAACATTTTCATATCACAACATAATCGTCACATTAATAATAAATCGC
AATACAACATACATTCACATATGACACAACACCTCCACAATAGGTTATGTTACAGTTAGAAACAC
ACCTCTAGGAAGCAGAAACTCTAACGACGAGGAGGTCATCCACCACGCACTGATCGAGTACCCGG
TCTAACAAGATTACATCCTACAAACACAACTAAAGATTAACACTATTCCTAGTCACCACTTAAAC
GCAAAACATAATTAAAAATAACTCACGTGCAACTCTCAGAACCAGTGCAGGAGTAGATTGCACAG
GTCGAGGAGGAGCTAAATCGTCAGCCTCGGAGTCGTGATCACCTAAACACAAATACCTCACATTA
GATTTCTCAAATTAAATCTCTAAATAACTCTAAGTACGAAATCAAAGATAAAACAGTCAAAACAA
GGCTTTCGAGTTTGAATTTGATAAAACAGTCAAA
Found at i:23097846 original size:12 final size:12
Alignment explanation
Indices: 23097829--23097878 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
23097819 ATTTTAATCG
23097829 ATTTAATATTAA
1 ATTTAATATTAA
*
23097841 ATTTAAT-CTAA
1 ATTTAATATTAA
23097852 TATTTATTATATT-A
1 -ATTTA--ATATTAA
23097866 ATTTAATATTAA
1 ATTTAATATTAA
23097878 A
1 A
23097879 GTGATTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
11 8 0.26
12 14 0.45
13 5 0.16
14 3 0.10
15 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:23101148 original size:27 final size:27
Alignment explanation
Indices: 23101110--23101163 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
23101100 GGTAAGTTAG
23101110 TTCAAGATTCAAGGGTTGATACTATCC
1 TTCAAGATTCAAGGGTTGATACTATCC
*
23101137 TTCAATATTCAAGGGTTGATACTATCC
1 TTCAAGATTCAAGGGTTGATACTATCC
23101164 ATCCATTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (27 bp):
TTCAAGATTCAAGGGTTGATACTATCC
Found at i:23101489 original size:17 final size:17
Alignment explanation
Indices: 23101469--23101522 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
23101459 ACTACAATGC
*
23101469 AAATGTACTAACAACTA
1 AAATGTACTGACAACTA
* *
23101486 AAATGCACTGACAATTAA
1 AAATGTACTGACAACT-A
*
23101504 AAATGTAATGACAACTA
1 AAATGTACTGACAACTA
23101521 AA
1 AA
23101523 TGATATGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (17 bp):
AAATGTACTGACAACTA
Found at i:23101508 original size:18 final size:18
Alignment explanation
Indices: 23101479--23101522 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
23101469 AAATGTACTA
*
23101479 ACAACT-AAAATGCACTG
1 ACAACTAAAAATGCAATG
* *
23101496 ACAATTAAAAATGTAATG
1 ACAACTAAAAATGCAATG
23101514 ACAACTAAA
1 ACAACTAAA
23101523 TGATATGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.55, C:0.16, G:0.09, T:0.20
Consensus pattern (18 bp):
ACAACTAAAAATGCAATG
Found at i:23101675 original size:21 final size:21
Alignment explanation
Indices: 23101634--23101676 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
23101624 CCTTCTTCTC
*
23101634 TGCGCTTCTTTTTCTTATCCT
1 TGCGCTTCTCTTTCTTATCCT
*
23101655 TGCGCTTTCTCTTT-TTGTCCT
1 TGCGC-TTCTCTTTCTTATCCT
23101676 T
1 T
23101677 TGAATCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.02, C:0.28, G:0.12, T:0.58
Consensus pattern (21 bp):
TGCGCTTCTCTTTCTTATCCT
Found at i:23103843 original size:20 final size:20
Alignment explanation
Indices: 23103818--23103861 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
23103808 CATAAGATTT
23103818 AAAAGA-AACAAGTAAAAGTA
1 AAAAGATAA-AAGTAAAAGTA
*
23103838 AAAAGATAAAAGTAAATGTA
1 AAAAGATAAAAGTAAAAGTA
23103858 AAAA
1 AAAA
23103862 TGCGTTGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (20 bp):
AAAAGATAAAAGTAAAAGTA
Found at i:23103849 original size:14 final size:14
Alignment explanation
Indices: 23103817--23103853 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
23103807 GCATAAGATT
23103817 TAAAAG-AAACAAG
1 TAAAAGTAAACAAG
23103830 TAAAAGTAAA-AAG
1 TAAAAGTAAACAAG
23103843 ATAAAAGTAAA
1 -TAAAAGTAAA
23103854 TGTAAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.70, C:0.03, G:0.14, T:0.14
Consensus pattern (14 bp):
TAAAAGTAAACAAG
Found at i:23120310 original size:13 final size:11
Alignment explanation
Indices: 23120282--23120312 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
23120272 TTTCACTCAG
23120282 TTCTCTCAATT
1 TTCTCTCAATT
23120293 TTCTCTCAATT
1 TTCTCTCAATT
23120304 TTCTCTCAA
1 TTCTCTCAA
23120313 GAAACTCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (11 bp):
TTCTCTCAATT
Found at i:23120504 original size:32 final size:32
Alignment explanation
Indices: 23120463--23120531 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
23120453 AAATGGTAAG
* ** *
23120463 ATTTAATTTTAATTTTTTATATTA-TTTATTTT
1 ATTTTATTTTAATAATTTA-ATTATTTTATATT
*
23120495 ATTTTATTTTTATAATTTAATTATTTTATATT
1 ATTTTATTTTAATAATTTAATTATTTTATATT
23120527 ATTTT
1 ATTTT
23120532 TAAAACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 4 0.13
32 27 0.87
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (32 bp):
ATTTTATTTTAATAATTTAATTATTTTATATT
Found at i:23120518 original size:27 final size:26
Alignment explanation
Indices: 23120476--23120549 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
23120466 TAATTTTAAT
* *
23120476 TTTTTAT-ATTATTTATTTTATTTTA
1 TTTTTATAATTAATTATTTTATATTA
23120501 TTTTTATAATTTAATTATTTTATATTA
1 TTTTTATAA-TTAATTATTTTATATTA
*
23120528 TTTTTAAAACTTAATTAATTTT
1 TTTTTATAA-TTAATT-ATTTT
23120550 TTAAATAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 7 0.17
26 1 0.02
27 29 0.69
28 5 0.12
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTATAATTAATTATTTTATATTA
Found at i:23121882 original size:15 final size:15
Alignment explanation
Indices: 23121854--23121896 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
23121844 AGCCCATCAT
23121854 CACCACCCACGCAAG
1 CACCACCCACGCAAG
* *
23121869 CACTACCCATGCAAG
1 CACCACCCACGCAAG
23121884 CACCACCCACGCA
1 CACCACCCACGCA
23121897 GCAAGTTACG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.51, G:0.12, T:0.05
Consensus pattern (15 bp):
CACCACCCACGCAAG
Found at i:23122477 original size:12 final size:13
Alignment explanation
Indices: 23122460--23122492 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23122450 GGGTAAAGTT
23122460 TAATTTTAATT-A
1 TAATTTTAATTGA
23122472 TAATTTTAATTGA
1 TAATTTTAATTGA
*
23122485 TATTTTTA
1 TAATTTTA
23122493 CCTTCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (13 bp):
TAATTTTAATTGA
Found at i:23123315 original size:18 final size:19
Alignment explanation
Indices: 23123271--23123318 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
23123261 TAATAGCATA
*
23123271 TTTTTTCTAAAAAAAGTAG
1 TTTTTTATAAAAAAAGTAG
*
23123290 TCTTTTTATAATAAAA-TAG
1 T-TTTTTATAAAAAAAGTAG
23123309 TTTTTTATAA
1 TTTTTTATAA
23123319 GAATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 9 0.35
19 5 0.19
20 12 0.46
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (19 bp):
TTTTTTATAAAAAAAGTAG
Found at i:23124277 original size:23 final size:24
Alignment explanation
Indices: 23124239--23124283 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
23124229 AAGCCTGCCC
23124239 ATATTATTTTTAATTTTTTTAAAA
1 ATATTATTTTTAATTTTTTTAAAA
*
23124263 ATATT-TTTTTTATTTTTTTAA
1 ATATTATTTTTAATTTTTTTAA
23124284 TATTTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
ATATTATTTTTAATTTTTTTAAAA
Found at i:23126944 original size:20 final size:20
Alignment explanation
Indices: 23126912--23126951 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23126902 TAACTTTCCA
*
23126912 GTAATTAATGCTATAGATAT
1 GTAATTAATGCTATAAATAT
23126932 GTAA-TAATAGCTATAAATAT
1 GTAATTAAT-GCTATAAATAT
23126952 ATAAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (20 bp):
GTAATTAATGCTATAAATAT
Found at i:23127914 original size:21 final size:21
Alignment explanation
Indices: 23127875--23127914 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23127865 TTCTTATAAA
*
23127875 ACTTTATTTTCATGCTATGAG
1 ACTTTATTTTCAAGCTATGAG
* *
23127896 ACTTTGTTTTCAAGTTATG
1 ACTTTATTTTCAAGCTATG
23127915 TTTTTAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (21 bp):
ACTTTATTTTCAAGCTATGAG
Found at i:23135371 original size:29 final size:30
Alignment explanation
Indices: 23135320--23135376 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23135310 AATTTTTTTA
** *
23135320 AATTTAGGGTTTAATTTGTAATTTTAATGG
1 AATTTAGGGACTAAATTGTAATTTTAATGG
23135350 AATTTAGGGACTAAATTG-AATTTTAAT
1 AATTTAGGGACTAAATTGTAATTTTAAT
23135377 TAAAGTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.46
Consensus pattern (30 bp):
AATTTAGGGACTAAATTGTAATTTTAATGG
Found at i:23137950 original size:36 final size:36
Alignment explanation
Indices: 23137910--23138055 Score: 179
Period size: 36 Copynumber: 4.1 Consensus size: 36
23137900 GTGAAAGTGG
*
23137910 ATATGTGGGTATGTTATTCATGTCATGAGACAGTAA
1 ATATGTGGGTATGTTATTCATGCCATGAGACAGTAA
* *
23137946 ATATGTGGGTATGTTATTCATGCCAAGAGACAATAA
1 ATATGTGGGTATGTTATTCATGCCATGAGACAGTAA
* * *
23137982 ATATGTGGCTGA-GTT-TTCATGCCGTGAGATAGTAA
1 ATATGTGGGT-ATGTTATTCATGCCATGAGACAGTAA
* * * *
23138017 ATATGTTGGTATGTTATTCATGACATGTGACAGTGA
1 ATATGTGGGTATGTTATTCATGCCATGAGACAGTAA
23138053 ATA
1 ATA
23138056 CATTGTGTTA
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
34 1 0.01
35 27 0.29
36 63 0.68
37 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.35
Consensus pattern (36 bp):
ATATGTGGGTATGTTATTCATGCCATGAGACAGTAA
Found at i:23138531 original size:120 final size:120
Alignment explanation
Indices: 23138302--23138661 Score: 470
Period size: 120 Copynumber: 3.0 Consensus size: 120
23138292 GCTTCCGCAA
* * * **
23138302 GCTATAATATAGAATTTCATCCTCATGTTTGTATCAACTCTGTTACCAGTATATGATGCTGCTCA
1 GCTATAATCTAGAATTTCATTCTCATGTCTGTATCAACTCTGTTACCAGTATACAATGCTGCTCA
* * * *
23138367 CACGAGCTGTTGAGGACTCGCAACATATACGGTACCTCAGCCATCAATACGGTAT
66 CACGAGCTGTCGAGGACTCGCAACATATGCGCTACCTCAACCATCAATACGGTAT
* * *
23138422 GCTATAATCTAGAATTTCATTCTCATGTCTGTATTAACTCTGTTACCAGTAAACAATGCTACTCA
1 GCTATAATCTAGAATTTCATTCTCATGTCTGTATCAACTCTGTTACCAGTATACAATGCTGCTCA
* ** *
23138487 CACAAGCTGTCGAGGACTTTCAACATATGCGCTA-CTCCAACCATCGATACGGTAT
66 CACGAGCTGTCGAGGACTCGCAACATATGCGCTACCT-CAACCATCAATACGGTAT
* * * *
23138542 GCTATAATCCAAAAATTCATTCTCATGTCTGTATCAACTCTGTTACTAGTATACAATGCTGCTCA
1 GCTATAATCTAGAATTTCATTCTCATGTCTGTATCAACTCTGTTACCAGTATACAATGCTGCTCA
* * * ** *
23138607 CACGAGATGTCAAGGACTCGCAACATATGCGGTACCTCAGTCATTAATACGGTAT
66 CACGAGCTGTCGAGGACTCGCAACATATGCGCTACCTCAACCATCAATACGGTAT
23138662 TTGTGCATAT
Statistics
Matches: 205, Mismatches: 33, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
119 2 0.01
120 201 0.98
121 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (120 bp):
GCTATAATCTAGAATTTCATTCTCATGTCTGTATCAACTCTGTTACCAGTATACAATGCTGCTCA
CACGAGCTGTCGAGGACTCGCAACATATGCGCTACCTCAACCATCAATACGGTAT
Found at i:23140471 original size:7 final size:7
Alignment explanation
Indices: 23140447--23140479 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
23140437 ACTAACTTTT
23140447 AATTCAA
1 AATTCAA
23140454 TAATT-AA
1 -AATTCAA
23140461 AATTCAA
1 AATTCAA
23140468 AATTCAA
1 AATTCAA
23140475 AATTC
1 AATTC
23140480 CATATAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (7 bp):
AATTCAA
Found at i:23151665 original size:2 final size:2
Alignment explanation
Indices: 23151658--23151682 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23151648 TAATAATAAT
23151658 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
23151683 TGACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23152938 original size:15 final size:15
Alignment explanation
Indices: 23152920--23152963 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
23152910 AGTAGATATG
23152920 AAATTATATTATTTT
1 AAATTATATTATTTT
* *
23152935 AAATTTTA-AATTTT
1 AAATTATATTATTTT
23152949 AAATTTATATTATTT
1 AAA-TTATATTATTT
23152964 AGCTTAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 8 0.35
15 11 0.48
16 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AAATTATATTATTTT
Found at i:23152942 original size:7 final size:7
Alignment explanation
Indices: 23152930--23152954 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23152920 AAATTATATT
23152930 ATTTTAA
1 ATTTTAA
23152937 ATTTTAA
1 ATTTTAA
23152944 ATTTTAA
1 ATTTTAA
23152951 ATTT
1 ATTT
23152955 ATATTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:23153722 original size:24 final size:24
Alignment explanation
Indices: 23153694--23153742 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
23153684 ATTGTTAGAA
*
23153694 TTTTAAAATTTCATGTATTAATAT
1 TTTTAAAATTTCATCTATTAATAT
*
23153718 TTTTAAAATTTCGTCTATTAATAT
1 TTTTAAAATTTCATCTATTAATAT
23153742 T
1 T
23153743 AATAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (24 bp):
TTTTAAAATTTCATCTATTAATAT
Found at i:23153748 original size:24 final size:24
Alignment explanation
Indices: 23153697--23153753 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
23153687 GTTAGAATTT
* **
23153697 TAAAATTTCATGTATTAATATTTT
1 TAAAATTTCATCTATTAATATTAA
*
23153721 TAAAATTTCGTCTATTAATATTAA
1 TAAAATTTCATCTATTAATATTAA
23153745 TAAATATTT
1 TAAA-ATTT
23153754 ATAATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (24 bp):
TAAAATTTCATCTATTAATATTAA
Found at i:23153937 original size:21 final size:19
Alignment explanation
Indices: 23153886--23153935 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
23153876 TGTGAAGAAA
*
23153886 TAATTATTATTGAAAAAAT
1 TAATTATTATTAAAAAAAT
*
23153905 TAAATATATATTAAAAAAAAT
1 TAATTAT-TATT-AAAAAAAT
23153926 T--TTATTATTA
1 TAATTATTATTA
23153936 TTTTGGATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 1 0.04
18 4 0.15
19 9 0.35
20 4 0.15
21 8 0.31
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TAATTATTATTAAAAAAAT
Found at i:23154547 original size:11 final size:11
Alignment explanation
Indices: 23154531--23154555 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23154521 TCTGACACGA
23154531 TTTTTTTTATT
1 TTTTTTTTATT
23154542 TTTTTTTTATT
1 TTTTTTTTATT
23154553 TTT
1 TTT
23154556 ATATATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:23154902 original size:4 final size:4
Alignment explanation
Indices: 23154889--23154934 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
23154879 AAATTTGAAG
* *
23154889 GAAA -AAA GAAA GAAA AAAGA GAAA GAAA GAAA GAAA -AAA GGAA GAA
1 GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAA
23154935 GGAAGAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 6 0.17
4 26 0.74
5 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:23154911 original size:13 final size:13
Alignment explanation
Indices: 23154890--23154922 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
23154880 AATTTGAAGG
23154890 AAAAA-AGAAAGA
1 AAAAAGAGAAAGA
23154902 AAAAAGAGAAAGA
1 AAAAAGAGAAAGA
23154915 AAGAAAGA
1 AA-AAAGA
23154923 AAAAAGGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 9 0.47
14 5 0.26
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAAAGA
Found at i:23154917 original size:21 final size:20
Alignment explanation
Indices: 23154889--23154928 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
23154879 AAATTTGAAG
23154889 GAAAAAAGAAAGAAAAAAGA
1 GAAAAAAGAAAGAAAAAAGA
23154909 GAAAGAAAGAAAGAAAAAAG
1 GAAA-AAAGAAAGAAAAAAG
23154929 GAAGAAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
GAAAAAAGAAAGAAAAAAGA
Found at i:23154936 original size:7 final size:7
Alignment explanation
Indices: 23154926--23154970 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
23154916 AGAAAGAAAA
23154926 AAGGAAG
1 AAGGAAG
23154933 AAGGAAG
1 AAGGAAG
23154940 AAGGAAG
1 AAGGAAG
23154947 AAGGAGAAG
1 AA-G-GAAG
23154956 AAGG-AG
1 AAGGAAG
*
23154962 AAAGAAG
1 AAGGAAG
23154969 AA
1 AA
23154971 AAGATAATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
6 5 0.15
7 21 0.62
8 2 0.06
9 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (7 bp):
AAGGAAG
Found at i:23154970 original size:16 final size:16
Alignment explanation
Indices: 23154926--23154970 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
23154916 AGAAAGAAAA
23154926 AAGGAAGAAG--GAAG
1 AAGGAAGAAGAAGAAG
*
23154940 AAGGAAGAAGGAGAAG
1 AAGGAAGAAGAAGAAG
23154956 AAGG-AGAAAGAAGAA
1 AAGGAAG-AAGAAGAA
23154971 AAGATAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 10 0.37
15 2 0.07
16 15 0.56
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (16 bp):
AAGGAAGAAGAAGAAG
Found at i:23155137 original size:18 final size:18
Alignment explanation
Indices: 23155114--23155148 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23155104 GGAAGAAATG
23155114 TAAGTTTAATTAATTTTT
1 TAAGTTTAATTAATTTTT
**
23155132 TAAGTTTGGTTAATTTT
1 TAAGTTTAATTAATTTT
23155149 AAATTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (18 bp):
TAAGTTTAATTAATTTTT
Found at i:23155162 original size:40 final size:36
Alignment explanation
Indices: 23155109--23155182 Score: 85
Period size: 40 Copynumber: 1.9 Consensus size: 36
23155099 GGAGTGGAAG
*
23155109 AAATGTAAGTTTAATTAATTTTTTAAGTTTGGTTAATTTT
1 AAATGTAAGTTTAA--AATATTTTAA-TTT-GTTAATTTT
* *
23155149 AAATTTAATTTTAAAATATTTTAATTTGTTAATT
1 AAATGTAAGTTTAAAATATTTTAATTTGTTAATT
23155183 AATTTGATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 7 0.23
37 3 0.10
38 9 0.29
40 12 0.39
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.55
Consensus pattern (36 bp):
AAATGTAAGTTTAAAATATTTTAATTTGTTAATTTT
Found at i:23155242 original size:23 final size:24
Alignment explanation
Indices: 23155168--23155250 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 24
23155158 TTTAAAATAT
*
23155168 TTTAATTTGTTAATTAATTTGATTA
1 TTTAATTT-TTAATTGATTTGATTA
* * *
23155193 TTTTAAGTTTT--TTGTTTTGTTTAA
1 -TTTAATTTTTAATTGATTTGATT-A
23155217 TTTAATTTTTAATTGATTTG-TTA
1 TTTAATTTTTAATTGATTTGATTA
23155240 TTTAATGTTTT
1 TTTAAT-TTTT
23155251 TATAGTTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
23 24 0.51
24 7 0.15
25 9 0.19
26 7 0.15
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (24 bp):
TTTAATTTTTAATTGATTTGATTA
Found at i:23155361 original size:20 final size:21
Alignment explanation
Indices: 23155320--23155362 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
23155310 TAATTTACTT
*
23155320 TAATTTAATTTTGTTAGTTAG
1 TAATTTAATTTTATTAGTTAG
*
23155341 TAATTTTATTTTATT-GTTAG
1 TAATTTAATTTTATTAGTTAG
23155361 TA
1 TA
23155363 GTAGTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (21 bp):
TAATTTAATTTTATTAGTTAG
Found at i:23156024 original size:29 final size:29
Alignment explanation
Indices: 23155992--23156081 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
23155982 GTATAAATTA
* *
23155992 AATATTTATTTTGTATCATTTTAGTAAAT
1 AATATATATTTTGTACCATTTTAGTAAAT
* * * * *
23156021 AATA-GTGTGTGGATACCATTTTAGTATAT
1 AATATATATTTTG-TACCATTTTAGTAAAT
23156050 AAATATATATTTTGTACCATTTTAGTAAAT
1 -AATATATATTTTGTACCATTTTAGTAAAT
23156080 AA
1 AA
23156082 CCTATTTTGG
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
28 4 0.09
29 20 0.43
30 19 0.40
31 4 0.09
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.47
Consensus pattern (29 bp):
AATATATATTTTGTACCATTTTAGTAAAT
Found at i:23156070 original size:30 final size:30
Alignment explanation
Indices: 23155985--23156081 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
23155975 CAAAATGGTA
* *
23155985 TAAATTAAATATTTATTTTGTATCATTTTAG
1 TAAA-TAAATATATATTTTGTACCATTTTAG
* * * *
23156016 TAAAT-AATA-GTGTGTGGATACCATTTTAG
1 TAAATAAATATATATTTTG-TACCATTTTAG
*
23156045 TATATAAATATATATTTTGTACCATTTTAG
1 TAAATAAATATATATTTTGTACCATTTTAG
23156075 TAAATAA
1 TAAATAA
23156082 CCTATTTTGG
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
28 4 0.08
29 18 0.35
30 22 0.42
31 8 0.15
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (30 bp):
TAAATAAATATATATTTTGTACCATTTTAG
Found at i:23157332 original size:43 final size:43
Alignment explanation
Indices: 23157250--23157334 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
23157240 ATTAACATGT
* *
23157250 TAAATTATATTACTTGACTCGTGTTAATATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
* *
23157293 TAAATTATATTACTTTACTCTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA
23157335 TTAATTGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
Found at i:23157966 original size:45 final size:45
Alignment explanation
Indices: 23157902--23158038 Score: 204
Period size: 45 Copynumber: 3.0 Consensus size: 45
23157892 GCATAGCTCA
23157902 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
*
23157947 TCAAGCCAAGGATATCAGCCTCAGATTGACGAGCCACCGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
** * * *
23157992 TCAAGGGAAGGATATCAAG-CTGAGTTTGATGAGCCACTGCAATAC
1 TCAAGCCAAGGATATC-AGCCTCAGTTTGACGAGCCACCGCAATAC
23158037 TC
1 TC
23158039 TACTCCTCCA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
45 82 0.98
46 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Found at i:23158056 original size:21 final size:21
Alignment explanation
Indices: 23158030--23158145 Score: 124
Period size: 21 Copynumber: 5.2 Consensus size: 21
23158020 ATGAGCCACT
*
23158030 GCAATACTCTACTCCTCCAGG
1 GCAATACTCTACTCCTCCGGG
23158051 GCAATACTCTACTCCTCCGGG
1 GCAATACTCTACTCCTCCGGG
* ** *
23158072 GCAAATGGACTCTAATAATGACGATGAG
1 GC-AAT--ACTCTACTCCT-CCG--G-G
23158100 GCAATACTCTACTCCTCCGGG
1 GCAATACTCTACTCCTCCGGG
23158121 GCAATACTCTACTCCTCCGGG
1 GCAATACTCTACTCCTCCGGG
23158142 GCAA
1 GCAA
23158146 ATGGACTCTA
Statistics
Matches: 79, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
21 48 0.61
22 4 0.05
24 10 0.13
25 10 0.13
27 4 0.05
28 3 0.04
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (21 bp):
GCAATACTCTACTCCTCCGGG
Found at i:23158108 original size:70 final size:70
Alignment explanation
Indices: 23158030--23158169 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
23158020 ATGAGCCACT
23158030 GCAATACTCTACTCCTCCAGGGCAATACTCTACTCCTCCGGGGCAAATGGACTCTAATAATGACG
1 GCAATACTCTACTCCTCCAGGGCAATACTCTACTCCTCCGGGGCAAATGGACTCTAATAATGACG
23158095 ATGAG
66 ATGAG
*
23158100 GCAATACTCTACTCCTCCGGGGCAATACTCTACTCCTCCGGGGCAAATGGACTCTAATAATGACG
1 GCAATACTCTACTCCTCCAGGGCAATACTCTACTCCTCCGGGGCAAATGGACTCTAATAATGACG
23158165 ATGAG
66 ATGAG
23158170 CTTGACGAGC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (70 bp):
GCAATACTCTACTCCTCCAGGGCAATACTCTACTCCTCCGGGGCAAATGGACTCTAATAATGACG
ATGAG
Found at i:23159142 original size:48 final size:48
Alignment explanation
Indices: 23159026--23159154 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 48
23159016 TTCATCCCGA
*
23159026 ATGACCCGACAATGATGGTTTACGCTA-TTCAACATTTTACCATCTCTG
1 ATGACCCGACAA-GATGGTTTACACTATTTCAACATTTTACCATCTCTG
* * * *
23159074 ATGGCTCAACAAGACAGGTTTACACTATTTCAACA-TTTACCATCT-TAG
1 ATGACCCGACAAGA-TGGTTTACACTATTTCAACATTTTACCATCTCT-G
*
23159122 ATGACCCGACAACGATGGTTTATACTATTTCAA
1 ATGACCCGACAA-GATGGTTTACACTATTTCAA
23159155 TATACTACCA
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
47 3 0.04
48 55 0.82
49 9 0.13
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (48 bp):
ATGACCCGACAAGATGGTTTACACTATTTCAACATTTTACCATCTCTG
Found at i:23159188 original size:49 final size:48
Alignment explanation
Indices: 23159018--23159188 Score: 121
Period size: 48 Copynumber: 3.5 Consensus size: 48
23159008 ACATTTGTTT
* * * * *
23159018 CATCCCGAATGACCCGACAATGATGGTTTACGCTA-TTCAACATTTTAC
1 CATCCCAAATGACCCAACAACGATGGTTTACACTATTTCAACA-TCTAC
* ** * * * *
23159066 CATCTCTGATGGCTCAACAA-GACAGGTTTACACTATTTCAACATTTAC
1 CATCCCAAATGACCCAACAACGA-TGGTTTACACTATTTCAACATCTAC
** * * * *
23159114 CATCTTAGATGACCCGACAACGATGGTTTATACTATTTCAATATACTAC
1 CATCCCAAATGACCCAACAACGATGGTTTACACTATTTCAACAT-CTAC
* *
23159163 CATCCCAAATGACCTAACAATGATGG
1 CATCCCAAATGACCCAACAACGATGG
23159189 ATTTCCTTAT
Statistics
Matches: 96, Mismatches: 23, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
47 2 0.02
48 62 0.65
49 32 0.33
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (48 bp):
CATCCCAAATGACCCAACAACGATGGTTTACACTATTTCAACATCTAC
Found at i:23162754 original size:39 final size:39
Alignment explanation
Indices: 23162681--23163593 Score: 1040
Period size: 39 Copynumber: 23.0 Consensus size: 39
23162671 TAGTTAGGGT
*
23162681 TTCAATCTGCCCCATGGTC-GGGTAAGAGATTGGATGCC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* *
23162719 TTCAATTTGCCACATGGTCGGGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * * * **
23162758 TTCAATATGCCCCATGGTCGAGATAAGAGATTAGATTTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * *
23162797 TTTAATTTGCCCCATGGTTGGGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
23162836 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * * * *
23162875 TTCAATTTACCTCATGGTCAGGGTAACAGATT-GAGTGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGA-TGGC
*
23162914 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGAC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* *
23162953 TTAAATCTGCCCCATGGTTGGGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* *
23162992 TTCAATCTGCCCTATGGTTGGGGTAAGAGATTGGATGATGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATG--G-C
* * * * *
23163034 TTCAATTTGCCCTATGGTTGGGGCAAGAGATTGGATGAC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * * *
23163073 TTCAATCTACCCTATGGTCGGGGTAAGAGATTAGATGAC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* **
23163112 TTCAATTTGCCCCATGGTCGGGGTAAGAGATTGGATAAC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* *
23163151 TTCAATCCGCCCCATGGTCGAGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * *
23163190 TTCAATTTGCCCCATGGTTGGGGTAAGAGATTGGGTGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* **
23163229 TTCAATATGCCCCATGGTCGTAGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
** * * *
23163268 TTCAATCTATCCCATGGTCAGGATAAGAGATTAGATGATGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATT-G--GATGGC
* *
23163310 TTCAATTTGCCCCATGGTCGGGGTAAGAGATTAGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* * **
23163349 TTCAATCTG-CTCATGATTAGGGTAAGAGATTGGATGGTGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGAT-G-G-C
* ** *
23163390 TTCAATCTGCCTCATAATCGGGGTAAGAGATTAGATGGTGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGAT-G-G-C
* *
23163432 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGATGGTGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGAT-G-G-C
* * *
23163474 TTCAATCTGCCTCATGATTGGGGTAAGAGATTGGATGGC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
* *
23163513 TTCAATCTGCTCCATGGTCGGGGTAAGAGATTGAATGATGTC
1 TTCAATCTGCCCCATGGTCGGGGTAAGAGATTG---GATGGC
*
23163555 TTCAATCTGCCCCCATGATCGGGGTAAGAGATTGGATGG
1 TTCAATCTG-CCCCATGGTCGGGGTAAGAGATTGGATGG
23163594 TAGTTTTGCT
Statistics
Matches: 757, Mismatches: 101, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
38 40 0.05
39 489 0.65
40 9 0.01
41 12 0.02
42 185 0.24
43 22 0.03
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (39 bp):
TTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGC
Found at i:23170401 original size:25 final size:25
Alignment explanation
Indices: 23170346--23170401 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
23170336 TTATTCTTGC
* *
23170346 ATAAAACTAAAGAAAACAAATTAAA
1 ATAAAACAAAAGAAAACAAAGTAAA
* *
23170371 AGAAAACAAAAGACAA-AAAGTAAA
1 ATAAAACAAAAGAAAACAAAGTAAA
23170395 TATAAAA
1 -ATAAAA
23170402 AATTGTAACA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.12
Consensus pattern (25 bp):
ATAAAACAAAAGAAAACAAAGTAAA
Found at i:23182956 original size:7 final size:7
Alignment explanation
Indices: 23182944--23182983 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
23182934 AGGAAAGAAA
23182944 GATGAGG
1 GATGAGG
23182951 GATGAGG
1 GATGAGG
23182958 GATGAGG
1 GATGAGG
23182965 GATGAGG
1 GATGAGG
23182972 GATGAGG
1 GATGAGG
23182979 GATGA
1 GATGA
23182984 TTAGGAATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.55, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:23183406 original size:23 final size:22
Alignment explanation
Indices: 23183375--23183418 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23183365 AAAGAAATAA
*
23183375 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
23183397 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
23183419 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:23190155 original size:11 final size:11
Alignment explanation
Indices: 23190139--23190169 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
23190129 TGGGGACTAC
23190139 GTTTATTTTAT
1 GTTTATTTTAT
23190150 GTTTATTTTAT
1 GTTTATTTTAT
23190161 GTTTATTTT
1 GTTTATTTT
23190170 GTAGTTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (11 bp):
GTTTATTTTAT
Found at i:23195305 original size:19 final size:19
Alignment explanation
Indices: 23195270--23195324 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 19
23195260 GTTAGTTGCA
23195270 TGCATTTCTTTTAATTGTCAT-
1 TGCATTT-TTTT-ATTGTC-TC
23195291 TGCATTTTTTTATTGTCTC
1 TGCATTTTTTTATTGTCTC
23195310 TGCATTTTATTTATT
1 TGCATTTT-TTTATT
23195325 CTAGCATTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.03
19 14 0.44
20 10 0.31
21 7 0.22
ACGTcount: A:0.16, C:0.13, G:0.09, T:0.62
Consensus pattern (19 bp):
TGCATTTTTTTATTGTCTC
Found at i:23223504 original size:19 final size:20
Alignment explanation
Indices: 23223457--23223504 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
23223447 TTGATAATTC
23223457 TTAA-TATTA-AATTATAAA
1 TTAATTATTATAATTATAAA
*
23223475 TTAAATT-TTATAATT-TATA
1 TT-AATTATTATAATTATAAA
23223494 TTAATTATTAT
1 TTAATTATTAT
23223505 CTAAAGTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.24
19 14 0.56
20 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTATTATAATTATAAA
Found at i:23226532 original size:24 final size:24
Alignment explanation
Indices: 23226498--23226544 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23226488 ATTCATCTTT
*
23226498 TATTAATTTGCTCTGAC-ATTTTA
1 TATTAATTTGCACTGACAATTTTA
23226521 TATTACATTTGCACTGACAATTTT
1 TATTA-ATTTGCACTGACAATTTT
23226545 TACTCTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 11 0.52
25 5 0.24
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.49
Consensus pattern (24 bp):
TATTAATTTGCACTGACAATTTTA
Found at i:23231190 original size:33 final size:33
Alignment explanation
Indices: 23231153--23231235 Score: 139
Period size: 33 Copynumber: 2.5 Consensus size: 33
23231143 AAGTCATAAA
23231153 TTGTCGACGCATTTCCAGATGAGAAATTATTCT
1 TTGTCGACGCATTTCCAGATGAGAAATTATTCT
* *
23231186 TTGTCAACACATTTCCAGATGAGAAATTATTCT
1 TTGTCGACGCATTTCCAGATGAGAAATTATTCT
*
23231219 TTGTCGACGCATCTCCA
1 TTGTCGACGCATTTCCA
23231236 TGGTATGCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (33 bp):
TTGTCGACGCATTTCCAGATGAGAAATTATTCT
Found at i:23243284 original size:25 final size:25
Alignment explanation
Indices: 23243250--23243298 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
23243240 GAGCCCGTCC
23243250 TTGCAATGAATAAGGGAATAGCTGA
1 TTGCAATGAATAAGGGAATAGCTGA
23243275 TTGCAATGAATAAGGGAATAGCTG
1 TTGCAATGAATAAGGGAATAGCTG
23243299 CATTTTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.29, T:0.24
Consensus pattern (25 bp):
TTGCAATGAATAAGGGAATAGCTGA
Found at i:23247705 original size:3 final size:3
Alignment explanation
Indices: 23247697--23247752 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
23247687 GGGGAAATTC
*
23247697 CTT CTT CTT CTT CCTT CTT -TT ATT -TT CTCT CTT CTT C-T CTT GCTT
1 CTT CTT CTT CTT -CTT CTT CTT CTT CTT CT-T CTT CTT CTT CTT -CTT
23247742 CTT CTT CTT CT
1 CTT CTT CTT CT
23247753 ACAATACCCA
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 6 0.13
3 32 0.68
4 9 0.19
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:23251726 original size:18 final size:18
Alignment explanation
Indices: 23251705--23251757 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
23251695 GCATTCGAAC
*
23251705 ATGTGGTTGCATCTGATT
1 ATGTGATTGCATCTGATT
* **
23251723 ATGTGACTGCATCTGGGT
1 ATGTGATTGCATCTGATT
23251741 ATGTGATTGCATCTGAT
1 ATGTGATTGCATCTGAT
23251758 CAGGTTGAGC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (18 bp):
ATGTGATTGCATCTGATT
Found at i:23255482 original size:17 final size:18
Alignment explanation
Indices: 23255450--23255486 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
23255440 GTTGATTGTG
*
23255450 TTTAATTGCTTGTTTATA
1 TTTAATTGCATGTTTATA
23255468 TTTAATT-CATGTTTATA
1 TTTAATTGCATGTTTATA
23255485 TT
1 TT
23255487 GTTATAAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.62
Consensus pattern (18 bp):
TTTAATTGCATGTTTATA
Found at i:23261008 original size:17 final size:18
Alignment explanation
Indices: 23260975--23261009 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23260965 ATTTTACTGT
23260975 TGAAATTAATTAATTTAA
1 TGAAATTAATTAATTTAA
*
23260993 TGAAATT-ATTATTTTAA
1 TGAAATTAATTAATTTAA
23261010 ATCAAGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (18 bp):
TGAAATTAATTAATTTAA
Found at i:23261263 original size:25 final size:25
Alignment explanation
Indices: 23261229--23261444 Score: 173
Period size: 25 Copynumber: 8.6 Consensus size: 25
23261219 TACTGAAGAT
23261229 TGGCTCGTAAGAGCGATATTCTATC
1 TGGCTCGTAAGAGCGATATTCTATC
* * *
23261254 TAGCTCGTAAGAACGATATTCTGTC
1 TGGCTCGTAAGAGCGATATTCTATC
* * *
23261279 TGGCTCGTAAGAGCAATGTTCTAAC
1 TGGCTCGTAAGAGCGATATTCTATC
* * * *
23261304 TAGCTCGTAAGAGCTATGTTCTGTC
1 TGGCTCGTAAGAGCGATATTCTATC
* * * * *
23261329 TGGTTCGTAAAAGCGATATTTTGTT
1 TGGCTCGTAAGAGCGATATTCTATC
* * * *
23261354 TGGCTCGTAAAAGCAATGTTCGAAT-
1 TGGCTCGTAAGAGCGATATTC-TATC
*
23261379 TGGCTCGTAAGAGCGATATTCTGTC
1 TGGCTCGTAAGAGCGATATTCTATC
* * * *
23261404 TGGGCTCATAAGAGCTAAACTCTATC
1 T-GGCTCGTAAGAGCGATATTCTATC
*
23261430 TAGGCTCGTATGAGC
1 T-GGCTCGTAAGAGC
23261445 TAAATTTTTG
Statistics
Matches: 149, Mismatches: 39, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
24 1 0.01
25 116 0.78
26 32 0.21
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (25 bp):
TGGCTCGTAAGAGCGATATTCTATC
Found at i:23261401 original size:75 final size:75
Alignment explanation
Indices: 23261227--23261416 Score: 247
Period size: 75 Copynumber: 2.5 Consensus size: 75
23261217 TTTACTGAAG
* * *
23261227 ATTGGCTCGTAAGAGCGATATTCTATCTAGCTCGTAAGAACGATATTCTGTCTGGCTCGTAAGAG
1 ATTGGCTCGTAAGAGCGATATTCTGTCTGGCTCGTAAGAACGATATTCTGTCTGGCTCGTAAAAG
*
23261292 CAATGTTCTA
66 CAATGTTCGA
* * * * * * *
23261302 ACTAGCTCGTAAGAGCTATGTTCTGTCTGGTTCGTAA-AAGCGATATTTTGTTTGGCTCGTAAAA
1 ATTGGCTCGTAAGAGCGATATTCTGTCTGGCTCGTAAGAA-CGATATTCTGTCTGGCTCGTAAAA
23261366 GCAATGTTCGA
65 GCAATGTTCGA
*
23261377 ATTGGCTCGTAAGAGCGATATTCTGTCTGGGCTCATAAGA
1 ATTGGCTCGTAAGAGCGATATTCTGTCT-GGCTCGTAAGA
23261417 GCTAAACTCT
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.02
75 85 0.89
76 7 0.07
77 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (75 bp):
ATTGGCTCGTAAGAGCGATATTCTGTCTGGCTCGTAAGAACGATATTCTGTCTGGCTCGTAAAAG
CAATGTTCGA
Found at i:23262894 original size:17 final size:16
Alignment explanation
Indices: 23262871--23262909 Score: 69
Period size: 17 Copynumber: 2.4 Consensus size: 16
23262861 TAAATGGAGT
23262871 TAGTTTTCTGAATTGA
1 TAGTTTTCTGAATTGA
23262887 TAAGTTTTCTGAATTGA
1 T-AGTTTTCTGAATTGA
23262904 TAGTTT
1 TAGTTT
23262910 ATAATTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (16 bp):
TAGTTTTCTGAATTGA
Found at i:23265663 original size:19 final size:19
Alignment explanation
Indices: 23265639--23265700 Score: 87
Period size: 16 Copynumber: 3.4 Consensus size: 19
23265629 CCATGTCAGC
23265639 AAATTATTTTAAAATATTA
1 AAATTATTTTAAAATATTA
23265658 AAATTATTTTTAAAATA-T-
1 AAATTA-TTTTAAAATATTA
23265676 AAATT-TTTTAAAAT-TTA
1 AAATTATTTTAAAATATTA
23265693 AAATTATT
1 AAATTATT
23265701 AAAACTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.26
17 5 0.13
18 7 0.18
19 7 0.18
20 10 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTATTTTAAAATATTA
Found at i:23266748 original size:32 final size:32
Alignment explanation
Indices: 23266680--23266752 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
23266670 GAAAATCCCC
* * ** *
23266680 AAACCTAAATCCCGAAATTCTTCAAATTTCTG
1 AAACCTAAAACCCGAAAATCCCCAAATTTCTA
23266712 AAACCTAAAACCCGAAAATCCCCAAAATTT-TA
1 AAACCTAAAACCCGAAAATCCCC-AAATTTCTA
23266744 AAACCTAAA
1 AAACCTAAA
23266753 CTAAAATCCC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 29 0.83
33 6 0.17
ACGTcount: A:0.47, C:0.26, G:0.04, T:0.23
Consensus pattern (32 bp):
AAACCTAAAACCCGAAAATCCCCAAATTTCTA
Found at i:23268408 original size:25 final size:25
Alignment explanation
Indices: 23268375--23268614 Score: 221
Period size: 25 Copynumber: 9.6 Consensus size: 25
23268365 TACTGAAGAT
* * *
23268375 TGGCTCGTAAGAGCAATATTTTGTT
1 TGGCTCGTAAGAGCGATATTCTGTC
**
23268400 TGGCTCGTAAGAATGATATTCTGTC
1 TGGCTCGTAAGAGCGATATTCTGTC
*
23268425 TGGCTCGTAAAAGCGATATTCTGTC
1 TGGCTCGTAAGAGCGATATTCTGTC
** * **
23268450 TGGCGT-GTAAGATTGATGTTCTAAC
1 TGGC-TCGTAAGAGCGATATTCTGTC
* * * * *
23268475 TAGCTTGTAAGATCAATATTTTGTC
1 TGGCTCGTAAGAGCGATATTCTGTC
* *
23268500 TGGCTCGTAAGAGCAATATTCTATC
1 TGGCTCGTAAGAGCGATATTCTGTC
* *
23268525 TGGCTTGTAAGAGCGATATTCTATC
1 TGGCTCGTAAGAGCGATATTCTGTC
* * **
23268550 TAGCTCGTAAGAGCGATGTTCTAAC
1 TGGCTCGTAAGAGCGATATTCTGTC
* *
23268575 TAGCTCATAAGAGCGATATTCTGTC
1 TGGCTCGTAAGAGCGATATTCTGTC
23268600 TGGGCTCGTAAGAGC
1 T-GGCTCGTAAGAGC
23268615 TAAACTCTAT
Statistics
Matches: 174, Mismatches: 38, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
24 1 0.01
25 161 0.93
26 12 0.07
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (25 bp):
TGGCTCGTAAGAGCGATATTCTGTC
Found at i:23268509 original size:100 final size:100
Alignment explanation
Indices: 23268377--23268612 Score: 303
Period size: 100 Copynumber: 2.4 Consensus size: 100
23268367 CTGAAGATTG
* ** *
23268377 GCTCGTAAGAGCAATATTTTGTTTGGCTCGTAAGAATGATATTCTGTCTGGCTCGTAAAAGCGAT
1 GCTCGTAAGAGCAATATTTTGTCTGGCTCGTAAGAACAATATTCTATCTGGCTCGTAAAAGCGAT
* * **
23268442 ATTCTGTCTGGCGT-GTAAGATTGATGTTCTAACTA
66 ATTCTATCTAGC-TCGTAAGAGCGATGTTCTAACTA
* * * * *
23268477 GCTTGTAAGATCAATATTTTGTCTGGCTCGTAAGAGCAATATTCTATCTGGCTTGTAAGAGCGAT
1 GCTCGTAAGAGCAATATTTTGTCTGGCTCGTAAGAACAATATTCTATCTGGCTCGTAAAAGCGAT
23268542 ATTCTATCTAGCTCGTAAGAGCGATGTTCTAACTA
66 ATTCTATCTAGCTCGTAAGAGCGATGTTCTAACTA
* * *
23268577 GCTCATAAGAGCGATATTCTGTCTGGGCTCGTAAGA
1 GCTCGTAAGAGCAATATTTTGTCT-GGCTCGTAAGA
23268613 GCTAAACTCT
Statistics
Matches: 116, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 104 0.90
101 11 0.09
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (100 bp):
GCTCGTAAGAGCAATATTTTGTCTGGCTCGTAAGAACAATATTCTATCTGGCTCGTAAAAGCGAT
ATTCTATCTAGCTCGTAAGAGCGATGTTCTAACTA
Found at i:23285871 original size:30 final size:30
Alignment explanation
Indices: 23285831--23285906 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
23285821 AATTGATACT
*
23285831 CAATTCAGTCCCTAAATTTTACTAAAA-TCA
1 CAATTTAGTCCCTAAA-TTTACTAAAATTCA
* * **
23285861 CAATTTAGTCCTTAAATTTCCTAAAATTTG
1 CAATTTAGTCCCTAAATTTACTAAAATTCA
*
23285891 CAAATTAGTCCCTAAA
1 CAATTTAGTCCCTAAA
23285907 ATCAAATTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 9 0.24
30 29 0.76
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (30 bp):
CAATTTAGTCCCTAAATTTACTAAAATTCA
Found at i:23292637 original size:57 final size:57
Alignment explanation
Indices: 23292543--23292763 Score: 286
Period size: 57 Copynumber: 3.9 Consensus size: 57
23292533 TTATCGAATG
* * *
23292543 ACAACTCGGGTAGAGCTATGGATTTGCTTACGTCTCGGATAAAGCGTAATGCCATGT
1 ACAACTCGGGTAGAGCTATGGATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGT
** * * * *
23292600 ACAACTCAAGTAGAGTTATGGATTTTCTTATGACTCGGTTAGAGCGTAATTCCATGT
1 ACAACTCGGGTAGAGCTATGGATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGT
*
23292657 ACAACTCGGGTATAGCTA--GATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGT
1 ACAACTCGGGTAGAGCTATGGATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGT
* * * *
23292712 ACAACTCGGGTAGAGCTATGGATTTGGTTA-CATCTCGATTAGAGCGTAATGC
1 ACAACTCGGGTAGAGCTATGGATTTGCTTATGA-CTCGGTTAAAGCGTAATGC
23292764 AACGAACAGC
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
55 51 0.36
56 1 0.01
57 88 0.63
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (57 bp):
ACAACTCGGGTAGAGCTATGGATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGT
Found at i:23292664 original size:28 final size:28
Alignment explanation
Indices: 23292632--23292727 Score: 81
Period size: 28 Copynumber: 3.5 Consensus size: 28
23292622 TTTTCTTATG
*
23292632 ACTCGGTTAGAGCGTAATTCCATGTACA
1 ACTCGGGTAGAGCGTAATTCCATGTACA
* * **
23292660 ACTCGGGTATAGC-TAGATTTGC-T-TATG
1 ACTCGGGTAGAGCGTA-A-TTCCATGTACA
* * *
23292687 ACTCGGTTAAAGCGTAATGCCATGTACA
1 ACTCGGGTAGAGCGTAATTCCATGTACA
23292715 ACTCGGGTAGAGC
1 ACTCGGGTAGAGC
23292728 TATGGATTTG
Statistics
Matches: 50, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
26 2 0.04
27 17 0.34
28 28 0.56
29 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (28 bp):
ACTCGGGTAGAGCGTAATTCCATGTACA
Found at i:23292754 original size:112 final size:113
Alignment explanation
Indices: 23292543--23292761 Score: 307
Period size: 112 Copynumber: 1.9 Consensus size: 113
23292533 TTATCGAATG
*
23292543 ACAACTCGGGTAGAGCTATGGATTTGCTTACGTCTCGGATAAAGCGTAATGCCATGTACAACTCA
1 ACAACTCGGGTAGAGCTA-GGATTTGCTTACGACTCGGATAAAGCGTAATGCCATGTACAACTCA
* * * *
23292608 AGTAGAGTTATGGATTTTCTTATGACTCGGTTAGAGCGTAATTCCATGT
65 AGTAGAGCTATGGATTTGCTTATCACTCGATTAGAGCGTAATTCCATGT
* * * **
23292657 ACAACTCGGGTATAGCTA-GATTTGCTTATGACTCGGTTAAAGCGTAATGCCATGTACAACTCGG
1 ACAACTCGGGTAGAGCTAGGATTTGCTTACGACTCGGATAAAGCGTAATGCCATGTACAACTCAA
*
23292721 GTAGAGCTATGGATTTGGTTA-CATCTCGATTAGAGCGTAAT
66 GTAGAGCTATGGATTTGCTTATCA-CTCGATTAGAGCGTAAT
23292762 GCAACGAACA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
111 1 0.01
112 75 0.81
114 17 0.18
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (113 bp):
ACAACTCGGGTAGAGCTAGGATTTGCTTACGACTCGGATAAAGCGTAATGCCATGTACAACTCAA
GTAGAGCTATGGATTTGCTTATCACTCGATTAGAGCGTAATTCCATGT
Found at i:23292781 original size:57 final size:57
Alignment explanation
Indices: 23292543--23292804 Score: 257
Period size: 57 Copynumber: 4.6 Consensus size: 57
23292533 TTATCGAATG
* *
23292543 ACAACTCGGGTAGAGCTATGGATTTGCTTACGTCTCGGA-TAAAGCGTAATGCCATGT
1 ACAACTCAGGTAGAGCTATGGATTTGCTTACATCTC-GATTAAAGCGTAATGCCATGT
* * * * * * *
23292600 ACAACTCAAGTAGAGTTATGGATTTTCTTATGA-CTCGGTTAGAGCGTAATTCCATGT
1 ACAACTCAGGTAGAGCTATGGATTTGCTTA-CATCTCGATTAAAGCGTAATGCCATGT
* * * *
23292657 ACAACTCGGGTATAGCTA--GATTTGCTTATGA-CTCGGTTAAAGCGTAATGCCATGT
1 ACAACTCAGGTAGAGCTATGGATTTGCTTA-CATCTCGATTAAAGCGTAATGCCATGT
* * * * * *
23292712 ACAACTCGGGTAGAGCTATGGATTTGGTTACATCTCGATTAGAGCGTAATGCAACGA
1 ACAACTCAGGTAGAGCTATGGATTTGCTTACATCTCGATTAAAGCGTAATGCCATGT
* * *
23292769 ACAGCTCAGGTAGAGCT-TTGATTTTCTTACATCTCG
1 ACAACTCAGGTAGAGCTATGGATTTGCTTACATCTCG
23292805 GTTCATGCAT
Statistics
Matches: 171, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
55 51 0.30
56 18 0.11
57 102 0.60
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (57 bp):
ACAACTCAGGTAGAGCTATGGATTTGCTTACATCTCGATTAAAGCGTAATGCCATGT
Done.