Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 79 of 125
Found at i:24704928 original size:16 final size:16
Alignment explanation
Indices: 24704907--24704947 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
24704897 AACAGAGAGT
24704907 ACACAAAGTACTGAGC
1 ACACAAAGTACTGAGC
24704923 ACACAAAGTACTGAGC
1 ACACAAAGTACTGAGC
24704939 ACACAAAGT
1 ACACAAAGT
24704948 GCTAATCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.46, C:0.24, G:0.17, T:0.12
Consensus pattern (16 bp):
ACACAAAGTACTGAGC
Found at i:24704965 original size:23 final size:23
Alignment explanation
Indices: 24704935--24705055 Score: 145
Period size: 23 Copynumber: 5.2 Consensus size: 23
24704925 ACAAAGTACT
24704935 GAGCACACAAAGTGCTAATCAGA
1 GAGCACACAAAGTGCTAATCAGA
* *
24704958 GAGCACACGAAGTGCTAATCGGA
1 GAGCACACAAAGTGCTAATCAGA
*
24704981 GAGCACACACAGTGCTAATAACAGA
1 GAGCACACAAAGTGCTAAT--CAGA
* * *
24705006 GAGCACGA-GACGTGCTAAACAGA
1 GAGCAC-ACAAAGTGCTAATCAGA
*
24705029 GAGCACACACAGTGCTAATCAGA
1 GAGCACACAAAGTGCTAATCAGA
24705052 GAGC
1 GAGC
24705056 GCGCTAGTGT
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
22 1 0.01
23 63 0.78
25 16 0.20
26 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.12
Consensus pattern (23 bp):
GAGCACACAAAGTGCTAATCAGA
Found at i:24713262 original size:15 final size:15
Alignment explanation
Indices: 24713242--24713270 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24713232 TATATTCATA
24713242 AAATAATAAATAAAT
1 AAATAATAAATAAAT
24713257 AAATAATAAATAAA
1 AAATAATAAATAAA
24713271 ATTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:24713264 original size:66 final size:67
Alignment explanation
Indices: 24713191--24713333 Score: 197
Period size: 66 Copynumber: 2.2 Consensus size: 67
24713181 TATAATAATA
*
24713191 AAATAATAAAACAAAATT-ATATTATTTTACATTTATTTAT-TT-ATATTCATAA-AATAATAAA
1 AAATAATAAAACAAAATTAATATTATTTTACATTTATTTATGTTCATA---AAAATAATAATAAA
24713252 TAAAT
63 TAAAT
* *
24713257 AAATAAT-AAATAAAATTAATATTATTTTATATTTATTTATGTTCATAAAAATAATAATAAATAA
1 AAATAATAAAACAAAATTAATATTATTTTACATTTATTTATGTTCATAAAAATAATAATAAATAA
24713321 AT
66 AT
24713323 AAATAATAAAA
1 AAATAATAAAA
24713334 ATAATAAGAA
Statistics
Matches: 69, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
65 12 0.17
66 49 0.71
67 5 0.07
68 3 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (67 bp):
AAATAATAAAACAAAATTAATATTATTTTACATTTATTTATGTTCATAAAAATAATAATAAATAA
AT
Found at i:24713292 original size:62 final size:64
Alignment explanation
Indices: 24713182--24713339 Score: 193
Period size: 62 Copynumber: 2.5 Consensus size: 64
24713172 TATTTTTTAT
*
24713182 ATAAT-AATAAAATAATAAAACAAAATT-ATATTATTTTACATTTATTTATTTATATTCAT-AAA
1 ATAATAAAT-AAATAAT-AAATAAAATTAATATTATTTTA-A-TTATTTATTTATATTCATAAAA
24713244 ATA
62 ATA
*
24713247 ATAAATAAATAAATAATAAATAAAATTAATATTATTTT-A-TATTTATTTATGTTCATAAAAATA
1 AT-AATAAATAAATAATAAATAAAATTAATATTATTTTAATTATTTATTTATATTCATAAAAATA
*
24713310 ATAATAAATAAATAA-ATAATAAAAATAATA
1 ATAATAAATAAATAATA-AATAAAATTAATA
24713340 AGAAAATGGA
Statistics
Matches: 85, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
61 1 0.01
62 41 0.48
63 8 0.09
64 1 0.01
65 11 0.13
66 20 0.24
67 3 0.04
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (64 bp):
ATAATAAATAAATAATAAATAAAATTAATATTATTTTAATTATTTATTTATATTCATAAAAATA
Found at i:24713339 original size:12 final size:12
Alignment explanation
Indices: 24713301--24713345 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
24713291 ATTTATGTTC
24713301 ATAAAAATAATA
1 ATAAAAATAATA
24713313 ATAAATAAATAAATA
1 AT-AA-AAAT-AATA
24713328 ATAAAAATAATA
1 ATAAAAATAATA
*
24713340 AGAAAA
1 ATAAAA
24713346 TGGAATTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 11 0.38
13 6 0.21
14 6 0.21
15 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:24715038 original size:80 final size:80
Alignment explanation
Indices: 24713857--24715378 Score: 2452
Period size: 79 Copynumber: 19.2 Consensus size: 80
24713847 ATAACTTTAG
* * * * * *
24713857 GGGTAAAAGATTAGATTGTTTTCAA-CTTGCCCCATGGTCGAGGTAAGAGATCTGATGGTCTTCA
1 GGGTAAAAGATTGGATT-TCTTCAATC-TGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCA
* *
24713921 ATC-TGCCTTTTGGTTA
64 ATCTTGCCCTCTGGTTA
*
24713937 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCAGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714002 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
*
24714017 GGGT-AAAGATTGGATTTCTTCAATCTGCCCCATGATTGGGGTAAAAGATCGGATGGT-TTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714080 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* *
24714095 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATTGGGGTAGAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714160 CTT-CCCTCTGGTTA
66 CTTGCCCTCTGGTTA
24714174 GGGTAAAAGATTGGATTTCTT-AATCTGCCCCATG-TCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714237 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* *
24714252 GGGTAAAAGATTGGATTTCTTCAATTTGCCCCATGATCGGGGTAGAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714317 CTT--CCTCTAGTTA
66 CTTGCCCTCTGGTTA
*
24714330 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714395 CTT-CTCTCTGGTTA
66 CTTGCCCTCTGGTTA
24714409 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTC-AT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714473 CTTTTTGCCCTCTAGTTA
66 C---TTGCCCTCTGGTTA
* **
24714491 GGGTAAAAGATTGGATTTCTTTAATCTGCCCTTTGATCGGGGT-AAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714555 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
* *
24714570 GGGTAAAAGATTGGATTTCTTCAATCTGCCTCATGATCGGGGTAAAA-ATCGGATGATCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714634 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
24714649 GGGTAACAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
* *
24714714 CTTG-CTTCTAGTTA
66 CTTGCCCTCTGGTTA
*
24714728 GGGTAAAAGATTGGATTTTTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24714793 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
24714808 GGGTAAAAGATT-GATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714872 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
24714887 GGGTAAAAGATTAGATTTCTTCAATCTG-CCCATGATCGGGGTAAAAGATCGG-TGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24714950 CTT-CCCTCTGGTTTA
66 CTTGCCCTCTGG-TTA
24714965 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
24715030 CTTG-CCTCTAGTTA
66 CTTGCCCTCTGGTTA
* *
24715044 AGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24715109 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
24715124 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
24715189 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* *
24715204 GGGTAAAAGATTGGATTTCTTCAATCTGCCTCATGATCGGGGTAAAATATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
* **
24715269 CTTGCCTTCTAATTA
66 CTTGCCCTCTGGTTA
* * *
24715284 GGGTAAAAGATTGGATTTCTTCAATTTGCCCCATGATCGGGGTAAAAGATCTGATGGTTTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
* * *
24715349 CTAGCCCTCTAGTGA
66 CTTGCCCTCTGGTTA
24715364 GGGTAAAAGATTGGA
1 GGGTAAAAGATTGGA
24715379 GGTTGTAATT
Statistics
Matches: 1354, Mismatches: 66, Indels: 44
0.92 0.05 0.03
Matches are distributed among these distances:
77 38 0.03
78 190 0.14
79 656 0.48
80 398 0.29
81 20 0.01
82 52 0.04
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (80 bp):
GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
CTTGCCCTCTGGTTA
Found at i:24715517 original size:50 final size:50
Alignment explanation
Indices: 24715463--24715608 Score: 202
Period size: 50 Copynumber: 2.9 Consensus size: 50
24715453 TTTAAATGAC
* * * * *
24715463 TGAGATTTGCCATTACAGCTTCATTCTGCCCCTCTACAGCTTTAGGTGTA
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
* **
24715513 TGAGATTTGACATTGCTTTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
* *
24715563 TGAGATTTACCATTGCAGTTTCAATCTGCACCTCCACCGCTTTAGG
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGG
24715609 GGTAAAAGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (50 bp):
TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
Found at i:24716560 original size:8 final size:7
Alignment explanation
Indices: 24716538--24716597 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
24716528 CGACCTCTCC
24716538 TTTTTC-
1 TTTTTCT
24716544 TTTTTCT
1 TTTTTCT
24716551 TTTCTTC-
1 TTT-TTCT
*
24716558 TTTTTCC
1 TTTTTCT
*
24716565 CTTTTC-
1 TTTTTCT
*
24716571 TTTGTCTT
1 TTTTTC-T
24716579 TTTTTCT
1 TTTTTCT
24716586 TTTTTCT
1 TTTTTCT
24716593 TTTTT
1 TTTTT
24716598 TTAATTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
6 13 0.29
7 24 0.53
8 8 0.18
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (7 bp):
TTTTTCT
Found at i:24716569 original size:21 final size:21
Alignment explanation
Indices: 24716537--24716595 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
24716527 TCGACCTCTC
24716537 CTTTTT-CTTTTTCTTTTCTT
1 CTTTTTCCTTTTTCTTTTCTT
*
24716557 CTTTTTCCCTTTTCTTTGTCTT
1 CTTTTTCCTTTTTCTTT-TCTT
*
24716579 -TTTTTCTTTTTTCTTTT
1 CTTTTTCCTTTTTCTTTT
24716596 TTTTAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.21
21 23 0.68
22 4 0.12
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (21 bp):
CTTTTTCCTTTTTCTTTTCTT
Found at i:24716596 original size:27 final size:27
Alignment explanation
Indices: 24716537--24716620 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
24716527 TCGACCTCTC
* * *
24716537 CTTTTTCTTTTTCTTTTCTTCTTTTTC
1 CTTTTTCTTTATCTTTTTTTCTTTTTT
* *
24716564 CCTTTTCTTTGTCTTTTTTTCTTTTTT
1 CTTTTTCTTTATCTTTTTTTCTTTTTT
*
24716591 CTTTTT-TTTAAT-TTTTTATCTTTTTT
1 CTTTTTCTTT-ATCTTTTTTTCTTTTTT
24716617 -TTTT
1 CTTTT
24716621 GAAATTTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
25 4 0.08
26 16 0.33
27 29 0.59
ACGTcount: A:0.04, C:0.15, G:0.01, T:0.80
Consensus pattern (27 bp):
CTTTTTCTTTATCTTTTTTTCTTTTTT
Found at i:24716598 original size:8 final size:8
Alignment explanation
Indices: 24716544--24716617 Score: 51
Period size: 9 Copynumber: 8.6 Consensus size: 8
24716534 CTCCTTTTTC
24716544 TTTTTCTT
1 TTTTTCTT
*
24716552 TTCTTCTT
1 TTTTTCTT
**
24716560 TTTCCCTTT
1 TTTTTC-TT
24716569 TCTTTGTCTT
1 T-TTT-TCTT
24716579 TTTTTC-T
1 TTTTTCTT
24716586 TTTTTCTTT
1 TTTTTC-TT
*
24716595 TTTTTAATT
1 TTTTT-CTT
24716604 TTTTATCTT
1 TTTT-TCTT
24716613 TTTTT
1 TTTTT
24716618 TTTGAAATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
7 7 0.14
8 13 0.25
9 24 0.47
10 6 0.12
11 1 0.02
ACGTcount: A:0.04, C:0.15, G:0.01, T:0.80
Consensus pattern (8 bp):
TTTTTCTT
Found at i:24716626 original size:23 final size:21
Alignment explanation
Indices: 24716587--24716635 Score: 50
Period size: 23 Copynumber: 2.3 Consensus size: 21
24716577 TTTTTTTCTT
24716587 TTTTC-TT-TTTTTTAATTT-
1 TTTTCTTTTTTTTTTAATTTC
24716605 TTTATCTTTTTTTTTTGAAATTTC
1 TTT-TCTTTTTTTTTT--AATTTC
24716629 TTTTCTT
1 TTTTCTT
24716636 CCTCGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
18 3 0.12
19 2 0.08
20 2 0.08
21 6 0.24
23 9 0.36
24 3 0.12
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (21 bp):
TTTTCTTTTTTTTTTAATTTC
Found at i:24721583 original size:4 final size:4
Alignment explanation
Indices: 24721574--24721601 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
24721564 TTTTGGTTTG
24721574 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
24721602 AATAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:24721703 original size:52 final size:54
Alignment explanation
Indices: 24721578--24721741 Score: 165
Period size: 52 Copynumber: 3.0 Consensus size: 54
24721568 GGTTTGTTAT
* * *
24721578 TTATTTATTTATTTATTTATTTATAATAATAATATAAATAATAAAACAAATTAATA
1 TTATTT-TATATTTATTTATTTATAAT-ATAATATAAATAATAAAAAAAATAAATA
* *
24721634 TTATTTTACATTTATTTATTTAT-AT-TCATA-AAATAATAAAATAAAATAAATA
1 TTATTTTATATTTATTTATTTATAATATAATATAAATAATAAAA-AAAATAAATA
* *
24721686 TTATTTTATATTTATTTATGTTCATAAAAATAATAATAAATAA-ATAAATAAATAAA
1 TTATTTTATATTTATTTAT-TT-AT-AATATAAT-ATAAATAATA-AAAAAAATAAA
24721742 AATAAAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
51 11 0.12
52 30 0.33
53 2 0.02
54 4 0.04
55 15 0.17
56 7 0.08
57 3 0.03
58 9 0.10
59 9 0.10
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (54 bp):
TTATTTTATATTTATTTATTTATAATATAATATAAATAATAAAAAAAATAAATA
Found at i:24721837 original size:2 final size:2
Alignment explanation
Indices: 24721832--24721856 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24721822 AAAAAAAAAA
24721832 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
24721857 CTTGATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24733567 original size:195 final size:194
Alignment explanation
Indices: 24733219--24733665 Score: 492
Period size: 195 Copynumber: 2.3 Consensus size: 194
24733209 AAACCGACGT
* * * *
24733219 GATGGCTGGGGTATCGCATATGTTGCGAGTCCTC-AGCAGCTCTTGTGAGCAACATCGTGAATTG
1 GATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGA-CAGCTCATGTGAGCAACATCGTGAATCG
** * * * * *
24733283 GGAAGATGATAAATGAATCCAAGAATGGATTATAGGCCATACGATGGTTGGGATTTATGCATAAG
65 AAAAGATGAT-AATGAATCCAAGAATAGATTACAGACCATACGATGGCTGGAATTTATGCATAAG
* * * * * *
24733348 TGCATATTCTCGATAACTCGTGTGAGCAGCATCGTTAGGGGATAGTTATATG-CACATATATCGT
129 TGCATATTCTCGACAACTCGTGTGAGCAACATCATTAGGGGACAGTT-TA-GACACAGACATCGT
*
24733412 ATC
192 ACC
* * * *
24733415 GATGGCTGAGGTACCGCATTTGTTGCGAGTCCTCGACAGCTCATGTAAGCAACATTGTGAGTCGA
1 GATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCATGTGAGCAACATCGTGAATCG-
* * *
24733480 AAAAGA-GAT-ATGAAATCCTAA-AATAGATTACAGACCCTATGATGGCTGGAATTTATGCTTGA
65 AAAAGATGATAATG-AATCC-AAGAATAGATTACAGACCATACGATGGCTGGAATTTATGCAT-A
* * *
24733542 A-TGCATATTCTCGACAGCTCGTGTGAGCAACATCATTAGGGGACAGTTTAGAGACAGACATTGT
127 AGTGCATATTCTCGACAACTCGTGTGAGCAACATCATTAGGGGACAGTTTAGACACAGACATCGT
24733606 ACC
192 ACC
* * * *
24733609 GATGGTTGAGGTACCTCATATGTTGCGAGTCCTCGAGAGCTCGTGTGAGCAACATCG
1 GATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCATGTGAGCAACATCG
24733666 GGTACTGGTA
Statistics
Matches: 210, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
193 1 0.00
194 65 0.31
195 78 0.37
196 61 0.29
197 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (194 bp):
GATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCATGTGAGCAACATCGTGAATCGA
AAAGATGATAATGAATCCAAGAATAGATTACAGACCATACGATGGCTGGAATTTATGCATAAGTG
CATATTCTCGACAACTCGTGTGAGCAACATCATTAGGGGACAGTTTAGACACAGACATCGTACC
Found at i:24736063 original size:55 final size:55
Alignment explanation
Indices: 24735979--24736086 Score: 164
Period size: 55 Copynumber: 2.0 Consensus size: 55
24735969 ATAGTAATCG
* *
24735979 AAGACCATATAGTGTAAGACCTAGCCAAGAGGGCTATGACATCGTATGAGGAATA
1 AAGACCATATAATGTAAGACCTAGCCAAGAGGGCTATGACATCATATGAGGAATA
* *
24736034 AAGACCATATAATGTAATG-CCTAGCCAAGAGGGTTATGACATCATATGGGGAA
1 AAGACCATATAATGTAA-GACCTAGCCAAGAGGGCTATGACATCATATGAGGAA
24736087 ATGAATATCA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 47 0.98
56 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (55 bp):
AAGACCATATAATGTAAGACCTAGCCAAGAGGGCTATGACATCATATGAGGAATA
Found at i:24736592 original size:28 final size:29
Alignment explanation
Indices: 24736549--24736627 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 29
24736539 AATGGTGGAA
* * *
24736549 AAGCCTTTGTGACTATCTTTGTTTAA-GG
1 AAGCCTCTGTGGCTATCTTTGTTAAATGG
* *
24736577 ATGCCTCTGTGGCTATCTGTGTTAAATGG
1 AAGCCTCTGTGGCTATCTTTGTTAAATGG
* *
24736606 AAGATCTCTGTAGCTATCTTTG
1 AAG-CCTCTGTGGCTATCTTTG
24736628 ATAAGGAGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.52
29 4 0.10
30 15 0.38
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (29 bp):
AAGCCTCTGTGGCTATCTTTGTTAAATGG
Found at i:24737244 original size:12 final size:12
Alignment explanation
Indices: 24737227--24737252 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24737217 TTCAAAAATT
24737227 TTGTATGTATGA
1 TTGTATGTATGA
24737239 TTGTATGTATGA
1 TTGTATGTATGA
24737251 TT
1 TT
24737253 TAGGTTCGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (12 bp):
TTGTATGTATGA
Found at i:24745058 original size:20 final size:20
Alignment explanation
Indices: 24745033--24745199 Score: 117
Period size: 20 Copynumber: 8.3 Consensus size: 20
24745023 TCATATCTGA
* *
24745033 ATGCACTACGGTGTCCTTGT
1 ATGCACTACGATGCCCTTGT
* * * *
24745053 ATGCACTTCAATGCCCCTGA
1 ATGCACTACGATGCCCTTGT
* *
24745073 ATGCACTATGATGCCCTTAT
1 ATGCACTACGATGCCCTTGT
*
24745093 ATGCATTAC-AGTGCCCTTGT
1 ATGCACTACGA-TGCCCTTGT
* *
24745113 ATGCACTTCGATGCCCTTGA
1 ATGCACTACGATGCCCTTGT
* *
24745133 ATGCATTACGGTGCTCC--GAT
1 ATGCACTACGATGC-CCTTG-T
* * * *
24745153 ATGCACTTCGGTGCCCCTGA
1 ATGCACTACGATGCCCTTGT
24745173 ATGCACTACGATG-CCTCTGT
1 ATGCACTACGATGCCCT-TGT
24745193 ATGCACT
1 ATGCACT
24745200 TCAATTCCCC
Statistics
Matches: 111, Mismatches: 29, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
19 6 0.05
20 101 0.91
21 4 0.04
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACTACGATGCCCTTGT
Found at i:24745127 original size:60 final size:60
Alignment explanation
Indices: 24745033--24745199 Score: 176
Period size: 60 Copynumber: 2.8 Consensus size: 60
24745023 TCATATCTGA
* * * * *
24745033 ATGCACTACGGTGTCCTTGTATGCACTTCAATGCCCCTGAATGCACTATGATGC-CCTTAT
1 ATGCATTACGGTGCCCTTGTATGCACTTCGATGCCCCTGAATGCACTACGATGCTCC-GAT
* * * *
24745093 ATGCATTACAGTGCCCTTGTATGCACTTCGATGCCCTTGAATGCATTACGGTGCTCCGAT
1 ATGCATTACGGTGCCCTTGTATGCACTTCGATGCCCCTGAATGCACTACGATGCTCCGAT
* * * * *
24745153 ATGCACTT-CGGTGCCCCTGAATGCACTACGATGCCTCTGTATGCACT
1 ATGCA-TTACGGTGCCCTTGTATGCACTTCGATGCCCCTGAATGCACT
24745200 TCAATTCCCC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
60 84 0.95
61 4 0.05
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (60 bp):
ATGCATTACGGTGCCCTTGTATGCACTTCGATGCCCCTGAATGCACTACGATGCTCCGAT
Found at i:24745156 original size:40 final size:39
Alignment explanation
Indices: 24745073--24745201 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 39
24745063 ATGCCCCTGA
*
24745073 ATGCACTAT-GATGCCCTT-ATATGCATTACAGTGC-CCTTGT
1 ATGCACT-TCGATGCCCTTGA-ATGCATTACGGTGCTCC--GT
24745113 ATGCACTTCGATGCCCTTGAATGCATTACGGTGCTCCGAT
1 ATGCACTTCGATGCCCTTGAATGCATTACGGTGCTCCG-T
* * * * *
24745153 ATGCACTTCGGTGCCCCTGAATGCACTACGATGCCTCTGT
1 ATGCACTTCGATGCCCTTGAATGCATTACGGTG-CTCCGT
24745193 ATGCACTTC
1 ATGCACTTC
24745202 AATTCCCCTG
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
39 2 0.03
40 69 0.88
41 7 0.09
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (39 bp):
ATGCACTTCGATGCCCTTGAATGCATTACGGTGCTCCGT
Found at i:24745754 original size:45 final size:45
Alignment explanation
Indices: 24745703--24745799 Score: 176
Period size: 45 Copynumber: 2.2 Consensus size: 45
24745693 GTTTAGTAAT
24745703 TAAATTGTTTTGAATGATTGATTTTCTTGTGGTACCTTTGAATGG
1 TAAATTGTTTTGAATGATTGATTTTCTTGTGGTACCTTTGAATGG
*
24745748 TAAATTGTTTTGAATGATTGATTTTCTTGTGGTACTTTTGAATGG
1 TAAATTGTTTTGAATGATTGATTTTCTTGTGGTACCTTTGAATGG
*
24745793 TACATTG
1 TAAATTG
24745800 GTTAGTTTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.23, C:0.06, G:0.22, T:0.49
Consensus pattern (45 bp):
TAAATTGTTTTGAATGATTGATTTTCTTGTGGTACCTTTGAATGG
Found at i:24758351 original size:22 final size:22
Alignment explanation
Indices: 24758325--24758378 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
24758315 GAAATTTTTT
*
24758325 AAAAAATAACAT-TTAATTTAA
1 AAAAAATAACATATTAATCTAA
* *
24758346 AGAAAATAAACATATTTATCTAA
1 AAAAAAT-AACATATTAATCTAA
24758369 AAAAAATAAC
1 AAAAAATAAC
24758379 TCAATAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 6 0.22
22 8 0.30
23 13 0.48
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAAAATAACATATTAATCTAA
Found at i:24758973 original size:49 final size:46
Alignment explanation
Indices: 24758882--24758973 Score: 121
Period size: 49 Copynumber: 1.9 Consensus size: 46
24758872 CAATATAATG
** *
24758882 GTTTTGCCTTTTAACTTAATGAGTAAACATTCATTAAAACGACATA
1 GTTTTGCCTTTTAACTTAAAAAGTAAACATTCATCAAAACGACATA
*
24758928 GTTTTGCCTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGAC
1 GTTTTGCCTTTTAAC-TTA-AAAA-GTAAACATTCATCAAAACGAC
24758974 GTAATTTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
46 15 0.38
47 3 0.08
48 2 0.05
49 19 0.49
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (46 bp):
GTTTTGCCTTTTAACTTAAAAAGTAAACATTCATCAAAACGACATA
Found at i:24760754 original size:42 final size:43
Alignment explanation
Indices: 24760668--24760758 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 43
24760658 GTATAAAAAC
24760668 ATGAATTTAAAGGATTAGTAGCATAAAATTCACCATTTTACATCAAAT
1 ATGAATTTAAAGGATTAGTAG-----AATTCACCATTTTACATCAAAT
24760716 ATGAATTTAAAGGATTAGTAG-ATTCACCATTTTACATCAAAT
1 ATGAATTTAAAGGATTAGTAGAATTCACCATTTTACATCAAAT
24760758 A
1 A
24760759 ATCATCCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
42 22 0.51
48 21 0.49
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (43 bp):
ATGAATTTAAAGGATTAGTAGAATTCACCATTTTACATCAAAT
Found at i:24762272 original size:16 final size:16
Alignment explanation
Indices: 24762251--24762297 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
24762241 TGAATTACTG
24762251 ATTACAACTCTA-TTC
1 ATTACAACTCTATTTC
24762266 TATTACAACTCTATTTC
1 -ATTACAACTCTATTTC
*
24762283 ATTACAGCTCTATTT
1 ATTACAACTCTATTT
24762298 AATTTCAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 26 0.90
17 3 0.10
ACGTcount: A:0.30, C:0.23, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTACAACTCTATTTC
Found at i:24770501 original size:24 final size:23
Alignment explanation
Indices: 24770473--24770579 Score: 133
Period size: 24 Copynumber: 4.5 Consensus size: 23
24770463 TTAAACTCTG
24770473 TCTGGGCTCGTAAGAGCTAATCT
1 TCTGGGCTCGTAAGAGCTAATCT
24770496 GTCTGGGCTCGTAAGAGCTAATCAT
1 -TCTGGGCTCGTAAGAGCTAATC-T
* * *
24770521 TCTAGGATCGTAAGAACTAATCTT
1 TCTGGGCTCGTAAGAGCTAATC-T
* *
24770545 TTTGGTCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATC-T
24770569 TCTGGGCTCGT
1 TCTGGGCTCGT
24770580 GTTGGCTAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
24 69 0.99
25 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (23 bp):
TCTGGGCTCGTAAGAGCTAATCT
Found at i:24770541 original size:48 final size:48
Alignment explanation
Indices: 24770480--24770571 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
24770470 CTGTCTGGGC
*
24770480 TCGTAAGAGCTAATCTGTCTGGGCTCGTAAGAGCTAATCATTCTAGGA
1 TCGTAAGAACTAATCTGTCTGGGCTCGTAAGAGCTAATCATTCTAGGA
* * *
24770528 TCGTAAGAACTAATCTTTTTGGTCTCGTAAGAGCTAATCATTCT
1 TCGTAAGAACTAATCTGTCTGGGCTCGTAAGAGCTAATCATTCT
24770572 GGGCTCGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (48 bp):
TCGTAAGAACTAATCTGTCTGGGCTCGTAAGAGCTAATCATTCTAGGA
Found at i:24784571 original size:25 final size:21
Alignment explanation
Indices: 24784538--24784582 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
24784528 ACGTGTTTAT
24784538 TTTTAAATTCATTAAATAATATAC
1 TTTTAAATT--TTAAA-AATATAC
24784562 TTTTATAATTTTAAAAATATA
1 TTTTA-AATTTTAAAAATATA
24784583 TTTACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 5 0.25
25 4 0.20
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAAATTTTAAAAATATAC
Found at i:24784659 original size:17 final size:18
Alignment explanation
Indices: 24784639--24784680 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
24784629 TGATTTTGAT
*
24784639 AAATAATTGAAAGAA-GA
1 AAATAATTAAAAGAATGA
*
24784656 AAATATTTTAAAAGAATGA
1 AAATA-ATTAAAAGAATGA
24784675 AAATAA
1 AAATAA
24784681 AAAAAAAGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 5 0.25
18 8 0.40
19 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (18 bp):
AAATAATTAAAAGAATGA
Found at i:24786069 original size:3 final size:3
Alignment explanation
Indices: 24786061--24786108 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
24786051 GTCACGGTTC
24786061 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
24786109 AATTGTCGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:24789349 original size:6 final size:6
Alignment explanation
Indices: 24789322--24789397 Score: 70
Period size: 6 Copynumber: 13.0 Consensus size: 6
24789312 AGCTTTTATT
* * *
24789322 ATTTAA ATTTAGA A--TAA TTTTAA ATTTAA ATATAA ATTTAA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
24789369 A-TTAA ATTTAA ATTTTAA A-ATAA ATTTAA
1 ATTTAA ATTTAA A-TTTAA ATTTAA ATTTAA
24789398 TCTTAAAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
4 1 0.02
5 11 0.19
6 37 0.65
7 8 0.14
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (6 bp):
ATTTAA
Found at i:24789379 original size:35 final size:34
Alignment explanation
Indices: 24789322--24789415 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 34
24789312 AGCTTTTATT
* *
24789322 ATTTAAATTTAGAATAATTTTAAA-TTTAAATATAA
1 ATTTAAACTTA-AATAAATTTAAATTTTAAA-ATAA
24789357 ATTTAAACTTAAATTAAATTTAAATTTTAAAATAA
1 ATTTAAACTTAAA-TAAATTTAAATTTTAAAATAA
* *
24789392 ATTTAATCTTAAAATAAATCTAAA
1 ATTTAAACTT-AAATAAATTTAAA
24789416 ATGGGTTTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
34 2 0.04
35 41 0.79
36 9 0.17
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (34 bp):
ATTTAAACTTAAATAAATTTAAATTTTAAAATAA
Found at i:24791206 original size:52 final size:52
Alignment explanation
Indices: 24791122--24791410 Score: 470
Period size: 52 Copynumber: 5.6 Consensus size: 52
24791112 CTCATTTGAC
* * * *
24791122 ACTCATGATGACACATAGTCATCAGACCTCATAATCTGAAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* * *
24791174 GCTCACCATGAGACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* *
24791226 ACTCACGATGACACATAGTCATCGTACCTTATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
*
24791278 ACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
*
24791330 ACTCACGATGACACACAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
*
24791382 ACTCACGATGACACACAGTCATCGGACCT
1 ACTCACGATGACACATAGTCATCGGACCT
24791411 TTTGCATTTA
Statistics
Matches: 222, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 222 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (52 bp):
ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
Found at i:24792215 original size:10 final size:11
Alignment explanation
Indices: 24792194--24792224 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
24792184 TTGTTTTTGC
24792194 CTCTGCTTCTT
1 CTCTGCTTCTT
24792205 CTCTG-TTCTT
1 CTCTGCTTCTT
24792215 CTCTGCTTCT
1 CTCTGCTTCT
24792225 ATTTGCAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.00, C:0.35, G:0.10, T:0.55
Consensus pattern (11 bp):
CTCTGCTTCTT
Found at i:24792539 original size:346 final size:347
Alignment explanation
Indices: 24791904--24792599 Score: 1315
Period size: 346 Copynumber: 2.0 Consensus size: 347
24791894 CTTTAAAGAT
24791904 TTTGAGAAATATTATTTTGTTTCGAAACCCTTAAAGTTTCGATCGATTTCATTTTTTATCTAAGT
1 TTTGAGAAATATTATTTTGTTTCGAAACCCTTAAAGTTTCGATCGATTTCATTTTTTATCTAAG-
24791969 TTTTTTTTTGCATGCAAATATATAAACCATATGTAAATATGCTTAGATTGATTTACCTTGAAACG
65 TTTTTTTTTGCATGCAAATATATAAACCATATGTAAATATGCTTAGATTGATTTACCTTGAAACG
24792034 AAATATTCTTGAGGGCTCGTTTGAATCTGATATCTCTTTGTTGTATCCTTTTTTTTTGTGGATCT
130 AAATATTCTTGAGGGCTCGTTTGAATCTGATATCTCTTTGTTGTATCCTTTTTTTTTGTGGATCT
24792099 GTGCATGAATATCTTTTCTATTAATCATGTAAACATTACAGGTTTTGTTTCGGCTTTTATAGCCG
195 GTGCATGAATATCTTTTCTATTAATCATGTAAACATTACAGGTTTTGTTTCGGCTTTTATAGCCG
*
24792164 AGATTTTTACACAAATACTGTTGTTTTTGCCTCTGCTTCTTCTCTGTTCTTCTCTGCTTCTATTT
260 AGATTTTTACACAAATACTGTTGTTTTTGCCTCTGCTTCTTCTCTGTTCTTCTCCGCTTCTATTT
24792229 GCAGGTATCACCAGAGTAGAGGC
325 GCAGGTATCACCAGAGTAGAGGC
*
24792252 TTTGAGAAATATTATTTTGTTTCGAAACCCTTAAAGTTTCGATCGATTTCCTTTTTTATCTAAG-
1 TTTGAGAAATATTATTTTGTTTCGAAACCCTTAAAGTTTCGATCGATTTCATTTTTTATCTAAGT
*
24792316 TTTTTTTTGCATGCAAATATATAAACCATATGTAAATATGCTTAGATTGATTTACCTTGAAATGA
66 TTTTTTTTGCATGCAAATATATAAACCATATGTAAATATGCTTAGATTGATTTACCTTGAAACGA
*
24792381 AATATTCTTGAGGGCTCGTTTGAATCTGATATCTCTTTGTTGTATCC-TTTTTTTTGTGTATCTG
131 AATATTCTTGAGGGCTCGTTTGAATCTGATATCTCTTTGTTGTATCCTTTTTTTTTGTGGATCTG
24792445 TGCATGAATATCTTTTCTATTAATCATGTAAACATTACAGGTTTTGTTTCGGCTTTTATAGCCGA
196 TGCATGAATATCTTTTCTATTAATCATGTAAACATTACAGGTTTTGTTTCGGCTTTTATAGCCGA
24792510 GATTTTTACACAAATACTGTTGTTTTTTGCCTCTGCTTCTTCTCTGTTCTTCTCCGCTTCTATTT
261 GATTTTTACACAAATACTGTTG-TTTTTGCCTCTGCTTCTTCTCTGTTCTTCTCCGCTTCTATTT
*
24792575 GCAGGTATCACCGGAGTAGAGGC
325 GCAGGTATCACCAGAGTAGAGGC
24792598 TT
1 TT
24792600 CTTGTGGTCA
Statistics
Matches: 342, Mismatches: 5, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
345 103 0.30
346 176 0.51
348 63 0.18
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (347 bp):
TTTGAGAAATATTATTTTGTTTCGAAACCCTTAAAGTTTCGATCGATTTCATTTTTTATCTAAGT
TTTTTTTTGCATGCAAATATATAAACCATATGTAAATATGCTTAGATTGATTTACCTTGAAACGA
AATATTCTTGAGGGCTCGTTTGAATCTGATATCTCTTTGTTGTATCCTTTTTTTTTGTGGATCTG
TGCATGAATATCTTTTCTATTAATCATGTAAACATTACAGGTTTTGTTTCGGCTTTTATAGCCGA
GATTTTTACACAAATACTGTTGTTTTTGCCTCTGCTTCTTCTCTGTTCTTCTCCGCTTCTATTTG
CAGGTATCACCAGAGTAGAGGC
Found at i:24793061 original size:16 final size:15
Alignment explanation
Indices: 24793037--24793095 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
24793027 GGTTTTTATT
24793037 ATTTAAATTTAGAATA
1 ATTTAAATTTA-AATA
*
24793053 ATTTTAATTTAAAT-
1 ATTTAAATTTAAATA
24793067 A--TAAATTTAAACTTA
1 ATTTAAATTTAAA--TA
*
24793082 AATTAAATTTAAAT
1 ATTTAAATTTAAAT
24793096 TTTAAAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
12 9 0.25
14 2 0.06
15 5 0.14
16 10 0.28
17 10 0.28
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTTAAATTTAAATA
Found at i:24793070 original size:17 final size:16
Alignment explanation
Indices: 24793037--24793122 Score: 75
Period size: 18 Copynumber: 5.1 Consensus size: 16
24793027 GGTTTTTATT
*
24793037 ATTTAAATTTAGAATA
1 ATTTAAATTTAAAATA
*
24793053 ATTTTAATTTAAATATAA
1 ATTTAAATTTAAA-AT-A
* *
24793071 ATTTAAACTTAAATTAA
1 ATTTAAATTTAAAAT-A
24793088 ATTTAAATTTTAAAATAA
1 ATTTAAA-TTTAAAAT-A
24793106 ATTT-AATCTTAAAATA
1 ATTTAAAT-TTAAAATA
24793122 A
1 A
24793123 ATCTAAAATG
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
16 14 0.24
17 21 0.36
18 24 0.41
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (16 bp):
ATTTAAATTTAAAATA
Found at i:24793101 original size:7 final size:6
Alignment explanation
Indices: 24793052--24793111 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
24793042 AATTTAGAAT
* * *
24793052 AATTTT AATTTA AATATA AATTTA AACTTA AA-TTA AATTTA AATTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA-TTTA
*
24793100 AA-ATA AATTTA A
1 AATTTA AATTTA A
24793112 TCTTAAAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 9 0.20
6 30 0.67
7 6 0.13
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (6 bp):
AATTTA
Found at i:24793106 original size:23 final size:23
Alignment explanation
Indices: 24793061--24793118 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
24793051 TAATTTTAAT
* *
24793061 TTAAATATAAATTTAAACTTAAA
1 TTAAATTTAAATTTAAACATAAA
24793084 TTAAATTTAAATTTTAAA-ATAAA
1 TTAAATTTAAA-TTTAAACATAAA
*
24793107 TTTAATCTTAAA
1 TTAAAT-TTAAA
24793119 ATAAATCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.63
24 11 0.37
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAAATTTAAATTTAAACATAAA
Found at i:24793106 original size:35 final size:35
Alignment explanation
Indices: 24793037--24793129 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 35
24793027 GGTTTTTATT
* * *
24793037 ATTTAAATTTAGAAT-AATTTTAATTTAAATATAA
1 ATTTAAACTTAAAATAAATTTAAATTTAAATATAA
*
24793071 ATTTAAACTTAAATTAAATTTAAATTTTAAA-ATAA
1 ATTTAAACTTAAAATAAATTTAAA-TTTAAATATAA
* *
24793106 ATTTAATCTTAAAATAAATCTAAA
1 ATTTAAACTTAAAATAAATTTAAA
24793130 ATGGGTTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 12 0.24
35 32 0.64
36 6 0.12
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (35 bp):
ATTTAAACTTAAAATAAATTTAAATTTAAATATAA
Found at i:24793123 original size:17 final size:17
Alignment explanation
Indices: 24793049--24793124 Score: 91
Period size: 17 Copynumber: 4.4 Consensus size: 17
24793039 TTAAATTTAG
*
24793049 AATAATTTTAAT-TTAA
1 AATAAATTTAATCTTAA
*
24793065 ATATAAATTTAAACTTAA
1 A-ATAAATTTAATCTTAA
* *
24793083 ATTAAATTTAAATTTTAA
1 AATAAATTT-AATCTTAA
24793101 AATAAATTTAATCTTAA
1 AATAAATTTAATCTTAA
24793118 AATAAAT
1 AATAAAT
24793125 CTAAAATGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
16 1 0.02
17 30 0.60
18 19 0.38
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
AATAAATTTAATCTTAA
Found at i:24794920 original size:52 final size:52
Alignment explanation
Indices: 24794836--24795124 Score: 443
Period size: 52 Copynumber: 5.6 Consensus size: 52
24794826 CTCATTTGAC
* * * *
24794836 ACTCATGATGACACATAGTCATCAGACCTCATAATCTGAAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* * *
24794888 GCTCACCATGAGACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* * * *
24794940 ACTCATGATGACACATAGTCATTGTACCTTATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* *
24794992 ACTCACGATAACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
24795044 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
* *
24795096 ACTCACGATGACACACAGTCATCGAACCT
1 ACTCACGATGACACATAGTCATCGGACCT
24795125 TTTGCATTTA
Statistics
Matches: 215, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 215 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (52 bp):
ACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATAT
Found at i:24800274 original size:52 final size:52
Alignment explanation
Indices: 24800186--24800425 Score: 372
Period size: 52 Copynumber: 4.6 Consensus size: 52
24800176 TTCTCATTTG
* * * *
24800186 ATACCCACGATGACACATAGTCATTGGACCTCATAATCCGAAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
* *
24800238 ATGCTCATGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
** *
24800290 ATACTCACGATGACACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
* *
24800342 ATACTCACGATGACACATAGTCATTGGACCTTATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
*
24800394 ATACTCACGATGACACATAGTCATCGAACCTT
1 ATACTCACGATGACACATAGTCATCGGACCTT
24800426 TTGCATTTAC
Statistics
Matches: 170, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 170 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
Found at i:24801438 original size:16 final size:16
Alignment explanation
Indices: 24801414--24801446 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24801404 GCCTTACAAA
*
24801414 TTTATTCCTTTAACAT
1 TTTAGTCCTTTAACAT
24801430 TTTAGTCCTTTAACAT
1 TTTAGTCCTTTAACAT
24801446 T
1 T
24801447 AAAATCATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.03, T:0.55
Consensus pattern (16 bp):
TTTAGTCCTTTAACAT
Found at i:24805564 original size:24 final size:24
Alignment explanation
Indices: 24805531--24805583 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
24805521 CCTTTTTACA
*
24805531 TTTACACTCGTCAACATGAGTATG
1 TTTACACTCGTCAACATGAGTACG
* *
24805555 TTTACGCTCGTCAGCATGAGTACG
1 TTTACACTCGTCAACATGAGTACG
24805579 TTTAC
1 TTTAC
24805584 TTTATTTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (24 bp):
TTTACACTCGTCAACATGAGTACG
Found at i:24806913 original size:12 final size:12
Alignment explanation
Indices: 24806896--24806923 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
24806886 CATAGAGATG
24806896 TGGAAGATGTCA
1 TGGAAGATGTCA
24806908 TGGAAGATGTCA
1 TGGAAGATGTCA
24806920 TGGA
1 TGGA
24806924 TACAGTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.36, T:0.25
Consensus pattern (12 bp):
TGGAAGATGTCA
Found at i:24809201 original size:21 final size:21
Alignment explanation
Indices: 24809153--24809249 Score: 86
Period size: 21 Copynumber: 4.6 Consensus size: 21
24809143 GATACATGCA
* * *
24809153 TATGTGAATTCTTTTACATGA
1 TATGCGAACTCTTTTACATGT
** *
24809174 TGCGCGAACTATTTTACATGT
1 TATGCGAACTCTTTTACATGT
*
24809195 TATGCGAACTCTTTTAGATGT
1 TATGCGAACTCTTTTACATGT
* * * *
24809216 TGTGCAAACTCTCTCACATGT
1 TATGCGAACTCTTTTACATGT
*
24809237 TATGCGAGCTCTT
1 TATGCGAACTCTT
24809250 ATGCATGGTA
Statistics
Matches: 57, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (21 bp):
TATGCGAACTCTTTTACATGT
Found at i:24809209 original size:42 final size:42
Alignment explanation
Indices: 24809153--24809249 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
24809143 GATACATGCA
* * * * *
24809153 TATGTGAATTCTTTTACATGATGCGCGAACTATTTTACATGT
1 TATGCGAACTCTTTTACATGATGCGCAAACTATCTCACATGT
* * * *
24809195 TATGCGAACTCTTTTAGATGTTGTGCAAACTCTCTCACATGT
1 TATGCGAACTCTTTTACATGATGCGCAAACTATCTCACATGT
*
24809237 TATGCGAGCTCTT
1 TATGCGAACTCTT
24809250 ATGCATGGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (42 bp):
TATGCGAACTCTTTTACATGATGCGCAAACTATCTCACATGT
Found at i:24814092 original size:24 final size:22
Alignment explanation
Indices: 24814049--24814114 Score: 60
Period size: 24 Copynumber: 2.8 Consensus size: 22
24814039 ACATGCAAAT
24814049 AAAAATTAAATGTAAATAAAATAA
1 AAAAATT-AAT-TAAATAAAATAA
*
24814073 AAAAATTAATTAATAGTAAAATAT
1 AAAAATTAATTAA-A-TAAAATAA
**
24814097 ATCAATTAATTAAGATAA
1 AAAAATTAATTAA-ATAA
24814115 TGCTCACTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 3 0.08
23 7 0.19
24 26 0.72
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
AAAAATTAATTAAATAAAATAA
Found at i:24814179 original size:14 final size:14
Alignment explanation
Indices: 24814162--24814203 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
24814152 AAATTTAGTT
*
24814162 ATATTAATATATGA
1 ATATTAATATATAA
*
24814176 ATATTAATATAAAA
1 ATATTAATATATAA
24814190 ATATTATATATATA
1 ATATTA-ATATATA
24814204 TTTTAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
ATATTAATATATAA
Found at i:24814876 original size:14 final size:14
Alignment explanation
Indices: 24814857--24814904 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
24814847 GTTTAAAATA
24814857 TTAAAATAATATTT
1 TTAAAATAATATTT
*
24814871 TTAAAA-ACTATTT
1 TTAAAATAATATTT
* *
24814884 TAAAAATAAAATTGT
1 TTAAAATAATATT-T
24814899 TTAAAA
1 TTAAAA
24814905 ACATTATTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
13 11 0.41
14 10 0.37
15 6 0.22
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (14 bp):
TTAAAATAATATTT
Found at i:24814978 original size:17 final size:16
Alignment explanation
Indices: 24814958--24815008 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 16
24814948 CTAATATTTT
24814958 TTTATATATTTTTAAAA
1 TTTA-ATATTTTTAAAA
24814975 TTTAATACTCTTTT-AAA
1 TTTAATA-T-TTTTAAAA
*
24814992 TTTCAAAATTTTTAAAA
1 TTT-AATATTTTTAAAA
24815009 AATAAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 7 0.24
17 15 0.52
18 7 0.24
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAATATTTTTAAAA
Found at i:24815694 original size:12 final size:12
Alignment explanation
Indices: 24815677--24815711 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24815667 ATAGGAATAA
24815677 TACAGATACAAT
1 TACAGATACAAT
*
24815689 TACAGATACAGT
1 TACAGATACAAT
*
24815701 CACAGATACAA
1 TACAGATACAA
24815712 ATGCAGTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20
Consensus pattern (12 bp):
TACAGATACAAT
Found at i:24815737 original size:17 final size:17
Alignment explanation
Indices: 24815690--24815752 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
24815680 AGATACAATT
**
24815690 ACAGATACAGTCACAGAT
1 ACAGATACAGTCAC-GCC
* * *
24815708 ACAAATGCAGTCATGCC
1 ACAGATACAGTCACGCC
* *
24815725 GCAGATACAGTCACGTC
1 ACAGATACAGTCACGCC
24815742 ACAGATACAGT
1 ACAGATACAGT
24815753 TACAAATACA
Statistics
Matches: 34, Mismatches: 11, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
17 23 0.68
18 11 0.32
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.17
Consensus pattern (17 bp):
ACAGATACAGTCACGCC
Found at i:24815943 original size:40 final size:40
Alignment explanation
Indices: 24815888--24815989 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
24815878 ATGACACATC
*
24815888 GCAGTGTTTACAATGTCACTACCAGTTCAGTTGTAATCTT
1 GCAGTGTTTACAATGTCACTACCAGTTCAGTTGAAATCTT
* * *
24815928 GCAGTGTTTACAATGTCATTATCGGTTCAGTTGAAATCTT
1 GCAGTGTTTACAATGTCACTACCAGTTCAGTTGAAATCTT
* *
24815968 GCAGTGTTAACAGTGTCACTAC
1 GCAGTGTTTACAATGTCACTAC
24815990 TACTTCAGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (40 bp):
GCAGTGTTTACAATGTCACTACCAGTTCAGTTGAAATCTT
Found at i:24816639 original size:52 final size:53
Alignment explanation
Indices: 24816528--24816658 Score: 174
Period size: 52 Copynumber: 2.5 Consensus size: 53
24816518 AGAATGATAT
* * * * *
24816528 ACACACACCCATGTATCAGCCCATGTTCCCTAGAACAATATACACATACCCTG
1 ACACACGCCCATGTGTCAGCCCATGTACCCTAAAACAATATACACACACCCTG
* * *
24816581 ACACACGCCCATGTGTCAGCCCGTGTACCC-AAAACAGTATACACACACCTTG
1 ACACACGCCCATGTGTCAGCCCATGTACCCTAAAACAATATACACACACCCTG
*
24816633 ACACACGCTCATGTGTCAGCCCATGT
1 ACACACGCCCATGTGTCAGCCCATGT
24816659 GCTACACACA
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
52 42 0.62
53 26 0.38
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.20
Consensus pattern (53 bp):
ACACACGCCCATGTGTCAGCCCATGTACCCTAAAACAATATACACACACCCTG
Found at i:24816715 original size:43 final size:43
Alignment explanation
Indices: 24816662--24816765 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
24816652 CCCATGTGCT
* *
24816662 ACACACACCCTGACACATGCCCGTGTGCCTCCAAACAGTATAG
1 ACACACACCCTGACACACGCCCATGTGCCTCCAAACAGTATAG
* * *
24816705 ACATACACCCTAACACACGCCTATGTGCCTCCAAACAGTATAG
1 ACACACACCCTGACACACGCCCATGTGCCTCCAAACAGTATAG
24816748 ACACACACCCTGACACAC
1 ACACACACCCTGACACAC
24816766 CTCCGTATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.34, C:0.38, G:0.12, T:0.15
Consensus pattern (43 bp):
ACACACACCCTGACACACGCCCATGTGCCTCCAAACAGTATAG
Found at i:24816844 original size:55 final size:55
Alignment explanation
Indices: 24816728--24816832 Score: 176
Period size: 55 Copynumber: 1.9 Consensus size: 55
24816718 CACACGCCTA
*
24816728 TGTGCCTCCAAACAGTATAGACACACACCCTGACACACCTCCGTATGTCAACCTG
1 TGTGCCTCCAAACAGTATAGACACACACCCTGACACACCTCCGTATGCCAACCTG
*
24816783 TGTGCCTCCAAACAGTATAGACACACACCCTGGACACACCT-CGTGTGCCA
1 TGTGCCTCCAAACAGTATAGACACACACCCT-GACACACCTCCGTATGCCA
24816833 GCTCGTGTGC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 38 0.81
56 9 0.19
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.19
Consensus pattern (55 bp):
TGTGCCTCCAAACAGTATAGACACACACCCTGACACACCTCCGTATGCCAACCTG
Found at i:24832242 original size:30 final size:27
Alignment explanation
Indices: 24832185--24832254 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 27
24832175 AACATCTAAG
*
24832185 TAAATAAA-AAACAAAATAACAATAAA
1 TAAATAAATAAATAAAATAACAATAAA
*
24832211 TAAATAAATAAATAAAATTAAACACTAAAA
1 TAAATAAATAAATAAAA-T-AACAAT-AAA
*
24832241 TAAACAAATAAATA
1 TAAATAAATAAATA
24832255 CACATAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.22
27 7 0.19
28 1 0.03
29 5 0.14
30 16 0.43
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (27 bp):
TAAATAAATAAATAAAATAACAATAAA
Found at i:24832414 original size:11 final size:11
Alignment explanation
Indices: 24832394--24832434 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
24832384 TGTGAATTAA
24832394 AAAC-AAAATT
1 AAACTAAAATT
*
24832404 ATACTAAAATT
1 AAACTAAAATT
24832415 AAACT-AAATT
1 AAACTAAAATT
*
24832425 AAAATAAAAT
1 AAACTAAAAT
24832435 AAAAATAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 12 0.46
11 14 0.54
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (11 bp):
AAACTAAAATT
Found at i:24832423 original size:21 final size:21
Alignment explanation
Indices: 24832394--24832434 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24832384 TGTGAATTAA
* *
24832394 AAACAAAATTATACTAAAATT
1 AAACAAAATTAAAATAAAATT
*
24832415 AAACTAAATTAAAATAAAAT
1 AAACAAAATTAAAATAAAAT
24832435 AAAAATAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (21 bp):
AAACAAAATTAAAATAAAATT
Found at i:24835099 original size:18 final size:18
Alignment explanation
Indices: 24835069--24835110 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
24835059 GAATAGGGAG
24835069 ATAAAAAAGATAATAA-AA
1 ATAAAAAAGATAA-AATAA
24835087 ATAAACAAA-ATAAAATAA
1 ATAAA-AAAGATAAAATAA
24835105 ATAAAA
1 ATAAAA
24835111 TCGTATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (18 bp):
ATAAAAAAGATAAAATAA
Found at i:24839622 original size:21 final size:21
Alignment explanation
Indices: 24839597--24839647 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
24839587 ATAATAGCAT
24839597 AATCCAAATATAAAGTTTAGA
1 AATCCAAATATAAAGTTTAGA
* *
24839618 AATCCAAACATAAAGTTTATA
1 AATCCAAATATAAAGTTTAGA
24839639 AATCCAAAT
1 AATCCAAAT
24839648 TACATAATCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.27
Consensus pattern (21 bp):
AATCCAAATATAAAGTTTAGA
Found at i:24842775 original size:23 final size:23
Alignment explanation
Indices: 24842745--24842802 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
24842735 CTGACATGGC
**
24842745 ATCCAGTCAGCAGCTTCTTGAAG
1 ATCCAGTCAGCAGCTTCCAGAAG
24842768 ATCCAGTCAGCAGCTTCCAGAAG
1 ATCCAGTCAGCAGCTTCCAGAAG
* *
24842791 GTCTAGTCAGCA
1 ATCCAGTCAGCA
24842803 AGGATGGACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (23 bp):
ATCCAGTCAGCAGCTTCCAGAAG
Found at i:24849155 original size:55 final size:55
Alignment explanation
Indices: 24849085--24849194 Score: 175
Period size: 55 Copynumber: 2.0 Consensus size: 55
24849075 TCGTCTTAAT
* *
24849085 TGTTGAAATACTGTTTCTTTTGAATCAATTTTTTATATGTTTAAATCGATTGTTA
1 TGTTGAAATACTGTTTCTTTTGAATCAATTGTTTATATGTTTAAATCGACTGTTA
* * *
24849140 TGTTGGAATATTGTTTCTTTTGAATCGATTGTTTATATGTTTAAATCGACTGTTA
1 TGTTGAAATACTGTTTCTTTTGAATCAATTGTTTATATGTTTAAATCGACTGTTA
24849195 CATAACCCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.52
Consensus pattern (55 bp):
TGTTGAAATACTGTTTCTTTTGAATCAATTGTTTATATGTTTAAATCGACTGTTA
Found at i:24849188 original size:21 final size:20
Alignment explanation
Indices: 24849120--24849193 Score: 52
Period size: 18 Copynumber: 4.0 Consensus size: 20
24849110 CAATTTTTTA
24849120 TATGTTTAAATCGATTG--T
1 TATGTTTAAATCGATTGTTT
**
24849138 TATGTTGGAAT--ATTG-TT
1 TATGTTTAAATCGATTGTTT
* *
24849155 TCT-TTTGAATCGATTGTTT
1 TATGTTTAAATCGATTGTTT
*
24849174 ATATGTTTAAATCGACTGTT
1 -TATGTTTAAATCGATTGTT
24849194 ACATAACCCT
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
16 10 0.23
17 3 0.07
18 13 0.30
19 2 0.05
20 2 0.05
21 13 0.30
ACGTcount: A:0.24, C:0.07, G:0.18, T:0.51
Consensus pattern (20 bp):
TATGTTTAAATCGATTGTTT
Found at i:24849598 original size:21 final size:21
Alignment explanation
Indices: 24849574--24849637 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
24849564 ACCTTGACCT
24849574 CTAAATCTAAAATCTTAAACC
1 CTAAATCTAAAATCTTAAACC
*
24849595 CTAAAT-TCAAAAT-TTAAAGC
1 CTAAATCT-AAAATCTTAAACC
* * *
24849615 CTCAAACCTTAAATCCTAAACC
1 CT-AAATCTAAAATCTTAAACC
24849637 C
1 C
24849638 GAATCTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
20 9 0.26
21 18 0.53
22 7 0.21
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.27
Consensus pattern (21 bp):
CTAAATCTAAAATCTTAAACC
Found at i:24852847 original size:14 final size:14
Alignment explanation
Indices: 24852824--24852866 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
24852814 CAAGTAAGCC
24852824 TCTTCTCTTCTCTCT
1 TCTTC-CTTCTCTCT
24852839 TCTTCCTTCT-TCCT
1 TCTTCCTTCTCT-CT
24852853 TCTTCCTT-TCTCT
1 TCTTCCTTCTCTCT
24852866 T
1 T
24852867 TCTAATCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.19
14 16 0.62
15 5 0.19
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (14 bp):
TCTTCCTTCTCTCT
Found at i:24860091 original size:25 final size:23
Alignment explanation
Indices: 24860063--24860108 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
24860053 GTTTGATTCA
24860063 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
24860088 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
24860109 CCCTAATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:24860787 original size:10 final size:10
Alignment explanation
Indices: 24860772--24860800 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
24860762 GCTTACTTAG
24860772 CCTTCTCTTT
1 CCTTCTCTTT
24860782 CCTTCTCTTT
1 CCTTCTCTTT
24860792 CCTTCTCTT
1 CCTTCTCTT
24860801 CTCATATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (10 bp):
CCTTCTCTTT
Found at i:24862972 original size:13 final size:13
Alignment explanation
Indices: 24862954--24862994 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
24862944 TTTTTGAAAA
24862954 AAAGTCAACGGTC
1 AAAGTCAACGGTC
*
24862967 AAAGTCAACAGTC
1 AAAGTCAACGGTC
24862980 AAAGTCAACGGTC
1 AAAGTCAACGGTC
24862993 AA
1 AA
24862995 CAGTTGATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.15
Consensus pattern (13 bp):
AAAGTCAACGGTC
Found at i:24862979 original size:7 final size:7
Alignment explanation
Indices: 24862956--24862998 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
24862946 TTTGAAAAAA
24862956 AGTCAAC
1 AGTCAAC
*
24862963 GGTCAA-
1 AGTCAAC
24862969 AGTCAAC
1 AGTCAAC
24862976 AGTCAA-
1 AGTCAAC
24862982 AGTCAAC
1 AGTCAAC
*
24862989 GGTCAAC
1 AGTCAAC
24862996 AGT
1 AGT
24862999 TGATCAATGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
6 11 0.37
7 19 0.63
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (7 bp):
AGTCAAC
Found at i:24863138 original size:25 final size:24
Alignment explanation
Indices: 24863063--24863143 Score: 71
Period size: 25 Copynumber: 3.5 Consensus size: 24
24863053 TGGGTTTGGT
24863063 TTGGTTTTTAAAGGGTTTGGGTTA
1 TTGGTTTTTAAAGGGTTTGGGTTA
* **
24863087 TTGG--GTCCAA--GTTTGGGCTTA
1 TTGGTTTTTAAAGGGTTTGGG-TTA
**
24863108 AGGGTTTTTAAAGGGTTTGGGTTA
1 TTGGTTTTTAAAGGGTTTGGGTTA
24863132 TTTGGTTTTTAA
1 -TTGGTTTTTAA
24863144 TTCTTATTCA
Statistics
Matches: 41, Mismatches: 10, Indels: 11
0.66 0.16 0.18
Matches are distributed among these distances:
20 7 0.17
21 5 0.12
22 3 0.07
23 3 0.07
24 7 0.17
25 16 0.39
ACGTcount: A:0.17, C:0.04, G:0.32, T:0.47
Consensus pattern (24 bp):
TTGGTTTTTAAAGGGTTTGGGTTA
Found at i:24870164 original size:14 final size:13
Alignment explanation
Indices: 24870145--24870191 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
24870135 TTGAAAAAAA
24870145 AGTCAACGATCAAC
1 AGTCAACG-TCAAC
24870159 AGTCAACGGTCAA-
1 AGTCAAC-GTCAAC
*
24870172 AGTCAACTGTTAAC
1 AGTCAAC-GTCAAC
24870186 AGTCAA
1 AGTCAA
24870192 TAGTCGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 11 0.38
14 17 0.59
15 1 0.03
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.19
Consensus pattern (13 bp):
AGTCAACGTCAAC
Found at i:24874352 original size:28 final size:28
Alignment explanation
Indices: 24874297--24874377 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
24874287 TCCAAATGCT
* * *
24874297 GAATAACACTCCATCCGAGCCAGAAACA
1 GAATAACGCTCTACCCGAGCCAGAAACA
* *
24874325 G-ATCAACGCTCTACCCGAGTCAGCAACA
1 GAAT-AACGCTCTACCCGAGCCAGAAACA
* * *
24874353 GAATAATGCTTTACCCGAGCTAGAA
1 GAATAACGCTCTACCCGAGCCAGAA
24874378 TAAGAATTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
27 2 0.05
28 37 0.90
29 2 0.05
ACGTcount: A:0.37, C:0.30, G:0.17, T:0.16
Consensus pattern (28 bp):
GAATAACGCTCTACCCGAGCCAGAAACA
Found at i:24875510 original size:30 final size:30
Alignment explanation
Indices: 24875475--24875584 Score: 121
Period size: 30 Copynumber: 3.7 Consensus size: 30
24875465 CCTGAATTTC
* **
24875475 CAAAAATTTGAATTTGACCCACAAATTTTT
1 CAAAAATTTAAATTTGACCCTTAAATTTTT
* * * * *
24875505 TAAAAATTTAAATTTAACCCTTACACTTTC
1 CAAAAATTTAAATTTGACCCTTAAATTTTT
**
24875535 CAAAAATTTTGATTTGACCCTTAAATTTTT
1 CAAAAATTTAAATTTGACCCTTAAATTTTT
*
24875565 CAAAAATTCAAATTTGACCC
1 CAAAAATTTAAATTTGACCC
24875585 GATTTTAATG
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (30 bp):
CAAAAATTTAAATTTGACCCTTAAATTTTT
Found at i:24875512 original size:60 final size:60
Alignment explanation
Indices: 24875471--24875584 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
24875461 GACACCTGAA
* *
24875471 TTTCCAAAAA-TTTGAATTTGACCCACAAATTTTTTAAAAATTTAAATTTAACCCTTACAC
1 TTTCCAAAAATTTTG-ATTTGACCCACAAATTTTTCAAAAATTTAAATTTAACCCTGACAC
** * *
24875531 TTTCCAAAAATTTTGATTTGACCCTTAAATTTTTCAAAAATTCAAATTTGACCC
1 TTTCCAAAAATTTTGATTTGACCCACAAATTTTTCAAAAATTTAAATTTAACCC
24875585 GATTTTAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
60 44 0.92
61 4 0.08
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.39
Consensus pattern (60 bp):
TTTCCAAAAATTTTGATTTGACCCACAAATTTTTCAAAAATTTAAATTTAACCCTGACAC
Found at i:24875660 original size:12 final size:14
Alignment explanation
Indices: 24875640--24875672 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
24875630 GTATATTATT
24875640 TTATTTTAT-TGTA
1 TTATTTTATATGTA
24875653 TT-TTTTATATGTA
1 TTATTTTATATGTA
24875666 TTATTTT
1 TTATTTT
24875673 TTATAGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 8 0.44
14 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (14 bp):
TTATTTTATATGTA
Found at i:24876060 original size:30 final size:30
Alignment explanation
Indices: 24876026--24876130 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 30
24876016 GAATTTCCAG
* * *
24876026 AAATTTAAATTTGACCCCCAAATTTTTCAA
1 AAATTCAAATTTGACCCTCAAACTTTTCAA
* * * * *
24876056 AAATTTAAATTTAACTCTCACACTTTCCAA
1 AAATTCAAATTTGACCCTCAAACTTTTCAA
** * *
24876086 AAATTCCGATTTGACCCTTAAAGTTTTCAA
1 AAATTCAAATTTGACCCTCAAACTTTTCAA
24876116 AAATTCAAATTTGAC
1 AAATTCAAATTTGAC
24876131 TTAATTTTAA
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATTCAAATTTGACCCTCAAACTTTTCAA
Found at i:24876123 original size:548 final size:547
Alignment explanation
Indices: 24875123--24876225 Score: 1857
Period size: 548 Copynumber: 2.0 Consensus size: 547
24875113 ACTTAGGTTT
* *
24875123 TTTTTTATAAAAAGTAAAAGAGAAATGAAATGAAAAAAGGGGTTGGATAATCATATAGTGAAACG
1 TTTTTTATAAAAAGTAAAAGAGAAAAGAAATAAAAAAAGGGGTTGGATAATCATATAGTGAAACG
* * *
24875188 ACGCGTATGGGGGAGAGAAATTCCCTTTTAAAAAAATTGGGAAAATTACCCATTTGGTCTTTTTT
66 ACACGTATGGGGGAGAGAAATTCCCTTTTAAAAAAATTGGGAAAATTACCCACTTGGTCTTTTGT
**
24875253 TAAGAAATTGTTTCAATCAAGTCCTTTTGACCCAATTTTTGTCATTTTCAATTTGACCCAACAAT
131 TAAGAAATTGTTTCAATCAAGTCCTTTTGACCCAATTTTTGTCATTTTCAATTCAACCCAACAAT
* **
24875318 TTTATTTGGTTTTTAATTTAGTCATTGACCCAAAAGTGTCCCAAGGCTGTCATGTGTCAAAAATT
196 TTTATTTGGTTTTCAATTTAGTCATTGACCCAAAAGTGTCCCAAGGCTACCATGTGTCAAAAATT
* * * *
24875383 TTGGGTTTATTGCCCATGAAGCCCCTGCTTTATTTTAAAATTATTTGTGAGCCCTAAACTTTCTA
261 TTGAGTTTATTGCCCATGAAGCCCCTACTTTATTTTAAAATTATTTGTGACCCCTAAACTTTCCA
* *
24875448 AAATTTATGTTTTGACACCTGAATTTCCAAAAATTTGAATTTGACCCACAAATTTTTTAAAAATT
326 AAATTTATGTTTTGACACCTGAATTTCCAAAAATTTAAATTTGACCCACAAATTTTTCAAAAATT
* ** *
24875513 TAAATTTAACCCTTACACTTTCCAAAAATTTTGATTTGACCCTTAAATTTTTCAAAAATTCAAAT
391 TAAATTTAACCCTCACACTTTCCAAAAATTCCGATTTGACCCTTAAAGTTTTCAAAAATTCAAAT
* *
24875578 TTGACCCGATTTTAATGTAAATTTTTTATTTAATACC-TTTTTATATGCATATGTATATTATTTT
456 TTGACCCAATTTTAATGTAAATTTTTTATTTAATACCTTTTTTATATGCATATGTATATGATTTT
*
24875642 ATTTTATTGTATTTTTTATATGTATTA
521 ATTTTATTGTATTTTGTATATGTATTA
*
24875669 TTTTTTATAGAAAGTAAAAGAGAAAAGAAATAAAAAAAGGGGTTGGATAATCATATAGTGAAACG
1 TTTTTTATAAAAAGTAAAAGAGAAAAGAAATAAAAAAAGGGGTTGGATAATCATATAGTGAAACG
* *
24875734 ACACGTATGGGGGAGAGAAATTCCTTTTTTAAAAAAATTGGGAAAATTGCCCACTTGGTCTTTTG
66 ACACGTATGGGGGAGAGAAATTCC-CTTTTAAAAAAATTGGGAAAATTACCCACTTGGTCTTTTG
24875799 TTAAGAAATTGTTTCAATCAAGTCCTTTTGACCCAATTTTTGTCATTTTCAATTCAACCCAACAA
130 TTAAGAAATTGTTTCAATCAAGTCCTTTTGACCCAATTTTTGTCATTTTCAATTCAACCCAACAA
24875864 TTTTATTTGGTTTTCAATTTAGTCATTGACCCAAAAGTGTCCCAGAGGCTACCATGTGTCAAAAA
195 TTTTATTTGGTTTTCAATTTAGTCATTGACCCAAAAGTGTCCCA-AGGCTACCATGTGTCAAAAA
* *
24875929 TTTTGAGTTTATTTCCCATGAAGCCCTTACTTTATTTTAAAATTATTTGTGACCCCTAAACTTTC
259 TTTTGAGTTTATTGCCCATGAAGCCCCTACTTTATTTTAAAATTATTTGTGACCCCTAAACTTTC
* * *
24875994 CAAAATTTATGTTTTGACACTTGAATTTCCAGAAATTTAAATTTGACCCCCAAATTTTTCAAAAA
324 CAAAATTTATGTTTTGACACCTGAATTTCCAAAAATTTAAATTTGACCCACAAATTTTTCAAAAA
*
24876059 TTTAAATTTAACTCTCACACTTTCCAAAAATTCCGATTTGACCCTTAAAGTTTTCAAAAATTCAA
389 TTTAAATTTAACCCTCACACTTTCCAAAAATTCCGATTTGACCCTTAAAGTTTTCAAAAATTCAA
** *
24876124 ATTTGACTTAATTTTAATGTAATTTTTTTATTTAATACCTTTTTTATATGCATATGTATATGATT
454 ATTTGACCCAATTTTAATGTAAATTTTTTATTTAATACCTTTTTTATATGCATATGTATATGATT
*
24876189 TTATTTTATTGTATTTTGTATATGTTTTA
519 TTATTTTATTGTATTTTGTATATGTATTA
24876218 TTTTTTAT
1 TTTTTTAT
24876226 TATGTATACT
Statistics
Matches: 518, Mismatches: 36, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
546 85 0.16
547 142 0.27
548 232 0.45
549 59 0.11
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (547 bp):
TTTTTTATAAAAAGTAAAAGAGAAAAGAAATAAAAAAAGGGGTTGGATAATCATATAGTGAAACG
ACACGTATGGGGGAGAGAAATTCCCTTTTAAAAAAATTGGGAAAATTACCCACTTGGTCTTTTGT
TAAGAAATTGTTTCAATCAAGTCCTTTTGACCCAATTTTTGTCATTTTCAATTCAACCCAACAAT
TTTATTTGGTTTTCAATTTAGTCATTGACCCAAAAGTGTCCCAAGGCTACCATGTGTCAAAAATT
TTGAGTTTATTGCCCATGAAGCCCCTACTTTATTTTAAAATTATTTGTGACCCCTAAACTTTCCA
AAATTTATGTTTTGACACCTGAATTTCCAAAAATTTAAATTTGACCCACAAATTTTTCAAAAATT
TAAATTTAACCCTCACACTTTCCAAAAATTCCGATTTGACCCTTAAAGTTTTCAAAAATTCAAAT
TTGACCCAATTTTAATGTAAATTTTTTATTTAATACCTTTTTTATATGCATATGTATATGATTTT
ATTTTATTGTATTTTGTATATGTATTA
Found at i:24876196 original size:27 final size:26
Alignment explanation
Indices: 24876165--24876233 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
24876155 TTAATACCTT
24876165 TTTTATATGCA-TATGTATATGATTTTA
1 TTTTAT-TGCATTATGTATATG-TTTTA
* *
24876192 TTTTATTGTATTTTGTATATGTTTTA
1 TTTTATTGCATTATGTATATGTTTTA
24876218 TTTT-TT--ATTATGTATA
1 TTTTATTGCATTATGTATA
24876234 CTTGTAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 9 0.24
25 2 0.05
26 12 0.32
27 15 0.39
ACGTcount: A:0.25, C:0.01, G:0.10, T:0.64
Consensus pattern (26 bp):
TTTTATTGCATTATGTATATGTTTTA
Found at i:24878244 original size:31 final size:31
Alignment explanation
Indices: 24878208--24878283 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
24878198 TGCATATGCA
* *
24878208 TTCATGCATTAAAAAAATTTTGCATCGCATT
1 TTCATGCATTAAAAAAATATTACATCGCATT
* * **
24878239 TTCATGCATTCATAAGGTATTACATCGCATT
1 TTCATGCATTAAAAAAATATTACATCGCATT
24878270 TTCATGCATTAAAA
1 TTCATGCATTAAAA
24878284 TTTCGAGAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (31 bp):
TTCATGCATTAAAAAAATATTACATCGCATT
Found at i:24883152 original size:50 final size:49
Alignment explanation
Indices: 24883016--24883382 Score: 417
Period size: 50 Copynumber: 7.4 Consensus size: 49
24883006 GATGAATCCT
* * * * *
24883016 ATACCCCTAAAGATGTAGA-GAAACGAATTGAAGCCATAATGGAAAATCTC
1 ATACACCTAAAGCTGTAGAGGAGA-G-ATTGAAGCCGTAATGGCAAATCTC
*
24883066 ATACACCTAAA-CTGTAGAGGGGAAGATTGAAGCCGTAATGGCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAG-AGATTGAAGCCGTAATGGCAAATCTC
*
24883115 ATACACCTAAAGCTGTAGAGGAGTAGATTGAAACCGTAATGGCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAG-AGATTGAAGCCGTAATGGCAAATCTC
* * *
24883165 ATACCCCTAAAGTTGTAGAGGA-ACGAATTGAAGCCGTAATGTCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAGA-G-ATTGAAGCCGTAATGGCAAATCTC
* * *
24883215 ATACACCTAAAGCTATAGAGGGGAAGATTGAAGCCGCAATGGCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAG-AGATTGAAGCCGTAATGGCAAATCTC
**
24883265 ATAC-CCTTAAAGCTGTAGAGGA-ACGAATTGAAGCCACAATGGCAAATCTC
1 ATACACC-TAAAGCTGTAGAGGAGA-G-ATTGAAGCCGTAATGGCAAATCTC
* *
24883315 ATACACCTAAAGCTGTAGAGGGGCAGATTGAAGTCGTAATGGCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAG-AGATTGAAGCCGTAATGGCAAATCTC
*
24883365 ATTCA---AAAGCTGTAGAGG
1 ATACACCTAAAGCTGTAGAGG
24883383 GGCAGATTAA
Statistics
Matches: 277, Mismatches: 27, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
47 13 0.05
48 2 0.01
49 43 0.16
50 212 0.77
51 5 0.02
52 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (49 bp):
ATACACCTAAAGCTGTAGAGGAGAGATTGAAGCCGTAATGGCAAATCTC
Found at i:24883225 original size:100 final size:100
Alignment explanation
Indices: 24883042--24883366 Score: 476
Period size: 100 Copynumber: 3.3 Consensus size: 100
24883032 AGAGAAACGA
* * *
24883042 ATTGAAGCCATAATGGAAAATCTCATACACCTAAA-CTGTAGAGGGGAA-G-ATTGAAGCCGTAA
1 ATTGAAGCCGTAATGGCAAATCTCATACCCCTAAAGCTGTAGA--GGAACGAATTGAAGCCGTAA
* *
24883104 TGGCAAATCTCATACACCTAAAGCTGTAGAGGAGTAG
64 TGGCAAATCTCATACACCTAAAGCTGTAGAGGGGAAG
* *
24883141 ATTGAAACCGTAATGGCAAATCTCATACCCCTAAAGTTGTAGAGGAACGAATTGAAGCCGTAATG
1 ATTGAAGCCGTAATGGCAAATCTCATACCCCTAAAGCTGTAGAGGAACGAATTGAAGCCGTAATG
* *
24883206 TCAAATCTCATACACCTAAAGCTATAGAGGGGAAG
66 GCAAATCTCATACACCTAAAGCTGTAGAGGGGAAG
* * **
24883241 ATTGAAGCCGCAATGGCAAATCTCATACCCTTAAAGCTGTAGAGGAACGAATTGAAGCCACAATG
1 ATTGAAGCCGTAATGGCAAATCTCATACCCCTAAAGCTGTAGAGGAACGAATTGAAGCCGTAATG
*
24883306 GCAAATCTCATACACCTAAAGCTGTAGAGGGGCAG
66 GCAAATCTCATACACCTAAAGCTGTAGAGGGGAAG
*
24883341 ATTGAAGTCGTAATGGCAAATCTCAT
1 ATTGAAGCCGTAATGGCAAATCTCAT
24883367 TCAAAAGCTG
Statistics
Matches: 203, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
98 4 0.02
99 32 0.16
100 167 0.82
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (100 bp):
ATTGAAGCCGTAATGGCAAATCTCATACCCCTAAAGCTGTAGAGGAACGAATTGAAGCCGTAATG
GCAAATCTCATACACCTAAAGCTGTAGAGGGGAAG
Found at i:24883295 original size:150 final size:150
Alignment explanation
Indices: 24883016--24883435 Score: 507
Period size: 150 Copynumber: 2.8 Consensus size: 150
24883006 GATGAATCCT
* * *
24883016 ATACCCCTAAAGATGTAGAGAAACGAATTGAAGCCATAATGGAAAATCTCATACACCTAAA-CTG
1 ATACCCCTAAAGATGTAGAGGAACGAATTGAAGCCGTAATGGCAAATCTCATACACCTAAAGCTG
*
24883080 TAGAGGGGAAGATTGAAGCCGTAATGGCAAATCTCATACACC-TAAAGCTGTAGAGGAGTAGATT
66 TAGAGGGGAAGATTGAAGCCGCAATGGCAAATCTCATAC-CCTTAAAGCTGTAGAGGAGTAGATT
**
24883144 GAAACCGTAATGGCAAATCTC
130 GAAACCACAATGGCAAATCTC
* * *
24883165 ATACCCCTAAAGTTGTAGAGGAACGAATTGAAGCCGTAATGTCAAATCTCATACACCTAAAGCTA
1 ATACCCCTAAAGATGTAGAGGAACGAATTGAAGCCGTAATGGCAAATCTCATACACCTAAAGCTG
24883230 TAGAGGGGAAGATTGAAGCCGCAATGGCAAATCTCATACCCTTAAAGCTGTAGAGGA--ACGAAT
66 TAGAGGGGAAGATTGAAGCCGCAATGGCAAATCTCATACCCTTAAAGCTGTAGAGGAGTA-G-AT
*
24883293 TGAAGCCACAATGGCAAATCTC
129 TGAAACCACAATGGCAAATCTC
* * ** * *
24883315 ATACACCTAAAGCTGTAGAGGGGC-AGATTGAAGTCGTAATGGCAAATCTCATTCA---AAAGCT
1 ATACCCCTAAAGATGTAGAGGAACGA-ATTGAAGCCGTAATGGCAAATCTCATACACCTAAAGCT
* * * * * * * * *
24883376 GTAGAGGGGCAGATTAAAGTCGCAA-GGACGAATCTTATACTCTTGAAGCTGAAGTGGAGT
65 GTAGAGGGGAAGATTGAAGCCGCAATGG-CAAATCTCATACCCTTAAAGCTGTAGAGGAGT
24883436 GAAGTTACCA
Statistics
Matches: 236, Mismatches: 27, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
146 2 0.01
147 51 0.22
148 1 0.00
149 60 0.25
150 122 0.52
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (150 bp):
ATACCCCTAAAGATGTAGAGGAACGAATTGAAGCCGTAATGGCAAATCTCATACACCTAAAGCTG
TAGAGGGGAAGATTGAAGCCGCAATGGCAAATCTCATACCCTTAAAGCTGTAGAGGAGTAGATTG
AAACCACAATGGCAAATCTC
Found at i:24883998 original size:50 final size:50
Alignment explanation
Indices: 24883776--24883998 Score: 186
Period size: 50 Copynumber: 4.4 Consensus size: 50
24883766 GCCAAATCCC
* *** *
24883776 ATATCCCTGAAGTTGCA-TGGA-TCGGATTGAAGCTACGATGGCGAATCCTT
1 ATATCCCTGAAGTTGCAGTGGAGTAGGA-TGAAGCTACGAAATCAAAT-CTT
* * * * *
24883826 AT-CCCTCTGAAGTTGCAGTAGAGTAGGATGAAGCTACAAAATCGAATCCT
1 ATATCC-CTGAAGTTGCAGTGGAGTAGGATGAAGCTACGAAATCAAATCTT
* * * *
24883876 ATACCCCTGAAGTTGCAGTGG-GTAGGATTAAAG-TCATGAAAACAAATCTTT
1 ATATCCCTGAAGTTGCAGTGGAGTAGGA-TGAAGCT-ACGAAATCAAATC-TT
* * * *
24883927 ATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGACATCAAATCTT
1 ATATCCCTGAAGTTGCAGTGGAGTAGGATGAAGCTACGAAATCAAATCTT
*
24883977 ATATCCTTGAAGTTGCAGTGGA
1 ATATCCCTGAAGTTGCAGTGGA
24883999 TTGAATTGAG
Statistics
Matches: 139, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
49 9 0.06
50 66 0.47
51 55 0.40
52 9 0.06
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (50 bp):
ATATCCCTGAAGTTGCAGTGGAGTAGGATGAAGCTACGAAATCAAATCTT
Found at i:24885299 original size:30 final size:30
Alignment explanation
Indices: 24885264--24885374 Score: 109
Period size: 30 Copynumber: 3.7 Consensus size: 30
24885254 ATTATTTGTT
24885264 ACCCTTAAACTTTCCAAAAATTTGAATTTA
1 ACCCTTAAACTTTCCAAAAATTTGAATTTA
* * * *
24885294 ACCCTTAAATTTTCTAAAAAATTGACTTTA
1 ACCCTTAAACTTTCCAAAAATTTGAATTTA
* * *
24885324 ACCC-CATACTTTCCAAAAATTTTG-ATTTG
1 ACCCTTAAACTTTCCAAAAA-TTTGAATTTA
* * *
24885353 ACCCCTAAAGTTTTCAAAAATT
1 ACCCTTAAACTTTCCAAAAATT
24885375 CAAATTTGAT
Statistics
Matches: 64, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
29 20 0.31
30 44 0.69
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (30 bp):
ACCCTTAAACTTTCCAAAAATTTGAATTTA
Found at i:24885483 original size:17 final size:16
Alignment explanation
Indices: 24885454--24885487 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24885444 TAGTTTATTG
24885454 TATTTTGTATATGTAT
1 TATTTTGTATATGTAT
*
24885470 TATTTTTTATTATGTAT
1 TATTTTGTA-TATGTAT
24885487 T
1 T
24885488 CTTGTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TATTTTGTATATGTAT
Found at i:24886303 original size:81 final size:81
Alignment explanation
Indices: 24886199--24886520 Score: 403
Period size: 81 Copynumber: 4.0 Consensus size: 81
24886189 TTAGCCACCA
*
24886199 CTACGGTCTATGTCACCCGCTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
1 CTACGGTCTATGTCACCCACTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
24886264 AAGATCTCAGCCATTG
66 AAGATCTCAGCCATTG
* * * ** ** *
24886280 CTACGGTCTACGTTACCCACTCACGATGCTGCTCACATAAGCTGAT-AAGAGCCCGCAACATATG
1 CTACGGTCTATGTCACCCACTCACGATGCTGCTCACAAAAGCTG-TCAAGAAACTACAACAAATG
* * ***
24886344 CAAGACCTTAGCCACCA
65 CAAGATCTCAGCCATTG
* * *
24886361 CTATGGTCTATGTCACCCGCTCACGATGTTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
1 CTACGGTCTATGTCACCCACTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
24886426 AAGATCTCAGCCATTG
66 AAGATCTCAGCCATTG
** * * * * *
24886442 CTATAGTCTATGTTACCCACCCACGATGCTGCTCACATAAGCTGTCAAGAAACTGCAACAAATAC
1 CTACGGTCTATGTCACCCACTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
*
24886507 AAGATCTCAACCAT
66 AAGATCTCAGCCAT
24886521 CGTAGAGGTC
Statistics
Matches: 200, Mismatches: 39, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.00
81 198 0.99
82 1 0.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (81 bp):
CTACGGTCTATGTCACCCACTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGC
AAGATCTCAGCCATTG
Found at i:24886423 original size:162 final size:162
Alignment explanation
Indices: 24886147--24886485 Score: 606
Period size: 162 Copynumber: 2.1 Consensus size: 162
24886137 TGTTCAGTGT
* *
24886147 TGCTGACACAAGCTGATAAGAGCCCGCAACATATGCAAGACCTTAGCCACCACTACGGTCTATGT
1 TGCTCACATAAGCTGATAAGAGCCCGCAACATATGCAAGACCTTAGCCACCACTACGGTCTATGT
24886212 CACCCGCTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGCAAGATCTCAGCCA
66 CACCCGCTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGCAAGATCTCAGCCA
* *
24886277 TTGCTACGGTCTACGTTACCCACTCACGATGC
131 TTGCTACAGTCTACGTTACCCACCCACGATGC
*
24886309 TGCTCACATAAGCTGATAAGAGCCCGCAACATATGCAAGACCTTAGCCACCACTATGGTCTATGT
1 TGCTCACATAAGCTGATAAGAGCCCGCAACATATGCAAGACCTTAGCCACCACTACGGTCTATGT
*
24886374 CACCCGCTCACGATGTTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGCAAGATCTCAGCCA
66 CACCCGCTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGCAAGATCTCAGCCA
* *
24886439 TTGCTATAGTCTATGTTACCCACCCACGATGC
131 TTGCTACAGTCTACGTTACCCACCCACGATGC
24886471 TGCTCACATAAGCTG
1 TGCTCACATAAGCTG
24886486 TCAAGAAACT
Statistics
Matches: 169, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
162 169 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (162 bp):
TGCTCACATAAGCTGATAAGAGCCCGCAACATATGCAAGACCTTAGCCACCACTACGGTCTATGT
CACCCGCTCACGATGCTGCTCACAAAAGCTGTCAAGAAACTACAACAAATGCAAGATCTCAGCCA
TTGCTACAGTCTACGTTACCCACCCACGATGC
Found at i:24890988 original size:24 final size:24
Alignment explanation
Indices: 24890961--24891023 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
24890951 AGAAATAATC
24890961 TTTCAATTAAACTCTGCTTAATTA
1 TTTCAATTAAACTCTGCTTAATTA
* * *
24890985 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGCTTAATTA
* *
24891009 TTTGAGTTAAACTCT
1 TTTCAATTAAACTCT
24891024 TATTAGTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (24 bp):
TTTCAATTAAACTCTGCTTAATTA
Found at i:24895743 original size:23 final size:23
Alignment explanation
Indices: 24895699--24895743 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
24895689 GAATTGATAT
**
24895699 AATTCGATTAATAATTTTTTAAA
1 AATTCGATTAATAATTAATTAAA
24895722 AATTCGATT-ATCAATTAATTAA
1 AATTCGATTAAT-AATTAATTAA
24895744 TCGAATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (23 bp):
AATTCGATTAATAATTAATTAAA
Found at i:24898074 original size:28 final size:28
Alignment explanation
Indices: 24898041--24898114 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
24898031 AAGAAAATGT
24898041 AATAAAAATATAAATAAA-ACAAAAA-AA
1 AATAAAAATATAAATAAAGA-AAAAAGAA
*
24898068 ATATAAAATTATAAA-AAAGAAAAAAGAA
1 A-ATAAAAATATAAATAAAGAAAAAAGAA
24898096 AATAAAAATA-ATAATAAAG
1 AATAAAAATATA-AATAAAG
24898115 GATGGTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 1 0.03
27 19 0.47
28 20 0.50
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (28 bp):
AATAAAAATATAAATAAAGAAAAAAGAA
Found at i:24903856 original size:11 final size:11
Alignment explanation
Indices: 24903842--24903879 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
24903832 ACAAAAAGTT
24903842 ATAAAATAAAA
1 ATAAAATAAAA
24903853 ATAAAATAAAA
1 ATAAAATAAAA
*
24903864 ACAAAA-AAATA
1 ATAAAATAAA-A
24903875 ATAAA
1 ATAAA
24903880 GGATGGCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 3 0.12
11 21 0.88
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:24903869 original size:17 final size:17
Alignment explanation
Indices: 24903808--24903879 Score: 55
Period size: 16 Copynumber: 4.5 Consensus size: 17
24903798 AATAAAATTT
*
24903808 ATAATAAAAACAAAACA
1 ATAATAAAAACAAAAAA
*
24903825 A-AA-CAAAAC-AAAAA
1 ATAATAAAAACAAAAAA
* * *
24903839 GTTATAAAATA-AAAATA
1 ATAATAAAA-ACAAAAAA
24903856 A-AATAAAAACAAAAAA
1 ATAATAAAAACAAAAAA
24903872 ATAATAAA
1 ATAATAAA
24903880 GGATGGCCAT
Statistics
Matches: 40, Mismatches: 9, Indels: 12
0.66 0.15 0.20
Matches are distributed among these distances:
14 4 0.10
15 7 0.17
16 17 0.43
17 12 0.30
ACGTcount: A:0.78, C:0.07, G:0.01, T:0.14
Consensus pattern (17 bp):
ATAATAAAAACAAAAAA
Found at i:24906807 original size:6 final size:6
Alignment explanation
Indices: 24906798--24906826 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
24906788 TCAATTCCAA
24906798 TTTCAC TTTCAC TTTCAC TTTCAC TTTCA
1 TTTCAC TTTCAC TTTCAC TTTCAC TTTCA
24906827 ATTTTGATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTCAC
Found at i:24906808 original size:18 final size:18
Alignment explanation
Indices: 24906785--24906829 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
24906775 ATTCATATCG
24906785 CTTTCAATTCCAATTTCA
1 CTTTCAATTCCAATTTCA
* * *
24906803 CTTTCACTTTCACTTTCA
1 CTTTCAATTCCAATTTCA
24906821 CTTTCAATT
1 CTTTCAATT
24906830 TTGATCACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (18 bp):
CTTTCAATTCCAATTTCA
Found at i:24909171 original size:22 final size:22
Alignment explanation
Indices: 24909146--24909192 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
24909136 TTTAATTCAA
24909146 TTTTCTATTT-CTTTCAATTCTG
1 TTTTCT-TTTACTTTCAATTCTG
* *
24909168 TTTTCTTTTATTTTTAATTCTG
1 TTTTCTTTTACTTTCAATTCTG
24909190 TTT
1 TTT
24909193 CGTTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.13, C:0.13, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTTCTTTTACTTTCAATTCTG
Found at i:24909198 original size:21 final size:22
Alignment explanation
Indices: 24909161--24909203 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
24909151 TATTTCTTTC
*
24909161 AATTCTGTTTTCTTTTATTTTT
1 AATTCTGTTTTCGTTTATTTTT
24909183 AATTCTG-TTTCGTTTATTTTT
1 AATTCTGTTTTCGTTTATTTTT
24909204 CCTCAGATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.14, C:0.09, G:0.07, T:0.70
Consensus pattern (22 bp):
AATTCTGTTTTCGTTTATTTTT
Found at i:24909203 original size:22 final size:24
Alignment explanation
Indices: 24909151--24909203 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
24909141 TTCAATTTTC
*
24909151 TATTTCTTTCAATTCTGTTTTCTTT
1 TATTT-TTTCAATTCTGTTTTCGTT
24909176 TA-TTTTT-AATTCTG-TTTCGTT
1 TATTTTTTCAATTCTGTTTTCGTT
24909197 TATTTTT
1 TATTTTT
24909204 CCTCAGATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 8 0.31
22 11 0.42
23 3 0.12
24 2 0.08
25 2 0.08
ACGTcount: A:0.13, C:0.11, G:0.06, T:0.70
Consensus pattern (24 bp):
TATTTTTTCAATTCTGTTTTCGTT
Found at i:24920388 original size:9 final size:9
Alignment explanation
Indices: 24920374--24920416 Score: 54
Period size: 8 Copynumber: 5.0 Consensus size: 9
24920364 TTTCGCCTCA
24920374 TTCTTTCTC
1 TTCTTTCTC
*
24920383 TTCTTTC-A
1 TTCTTTCTC
24920391 TTCTTTCTC
1 TTCTTTCTC
*
24920400 TTCTTTC-A
1 TTCTTTCTC
24920408 TTCTTTCTC
1 TTCTTTCTC
24920417 ACTCCCTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 14 0.50
9 14 0.50
ACGTcount: A:0.05, C:0.30, G:0.00, T:0.65
Consensus pattern (9 bp):
TTCTTTCTC
Found at i:24920393 original size:17 final size:17
Alignment explanation
Indices: 24920371--24920416 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
24920361 TGGTTTCGCC
24920371 TCATTCTTTCTCTTCTT
1 TCATTCTTTCTCTTCTT
24920388 TCATTCTTTCTCTTCTT
1 TCATTCTTTCTCTTCTT
24920405 TCATTCTTTCTC
1 TCATTCTTTCTC
24920417 ACTCCCTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (17 bp):
TCATTCTTTCTCTTCTT
Found at i:24920525 original size:3 final size:3
Alignment explanation
Indices: 24920517--24920545 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
24920507 AGACGAAGAC
24920517 GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
24920546 AGATGATGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:24925427 original size:80 final size:80
Alignment explanation
Indices: 24925337--24925496 Score: 302
Period size: 80 Copynumber: 2.0 Consensus size: 80
24925327 CATTGTGATT
* *
24925337 ATGGCAAATTGATAACTGAAATAAAATTGGCGACCAGCGAAGTGGTGAGTACTCTTTTTTTCATT
1 ATGGCAAATTGATAACTGAAATAAAATTGGCGACCAGCGAAGTGGTAAGTACTCGTTTTTTCATT
24925402 TTTGTCAAAATACTG
66 TTTGTCAAAATACTG
24925417 ATGGCAAATTGATAACTGAAATAAAATTGGCGACCAGCGAAGTGGTAAGTACTCGTTTTTTCATT
1 ATGGCAAATTGATAACTGAAATAAAATTGGCGACCAGCGAAGTGGTAAGTACTCGTTTTTTCATT
24925482 TTTGTCAAAATACTG
66 TTTGTCAAAATACTG
24925497 CAGGGTGAGA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (80 bp):
ATGGCAAATTGATAACTGAAATAAAATTGGCGACCAGCGAAGTGGTAAGTACTCGTTTTTTCATT
TTTGTCAAAATACTG
Found at i:24940314 original size:25 final size:26
Alignment explanation
Indices: 24940279--24940330 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24940269 AAAATTTAAC
* *
24940279 AGCAAATTTTTA-AAGAAGGAAAGGA
1 AGCAAAATTTTAGAAGAAGAAAAGGA
24940304 AGCAAAATTTTAGAAGAAGAAAAGGA
1 AGCAAAATTTTAGAAGAAGAAAAGGA
24940330 A
1 A
24940331 ACAGAAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.56, C:0.04, G:0.23, T:0.17
Consensus pattern (26 bp):
AGCAAAATTTTAGAAGAAGAAAAGGA
Found at i:24943117 original size:28 final size:28
Alignment explanation
Indices: 24943064--24943121 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
24943054 CATTTTTCTG
*
24943064 TTGGAATTAATTAAGTTTATGATTGAAT
1 TTGGAATTAATTAAGTTTATAATTGAAT
**
24943092 TTGGAATTAATTTTGTTTA-AATTTGAAT
1 TTGGAATTAATTAAGTTTATAA-TTGAAT
24943120 TT
1 TT
24943122 ATTTAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.52
Consensus pattern (28 bp):
TTGGAATTAATTAAGTTTATAATTGAAT
Found at i:24945682 original size:16 final size:17
Alignment explanation
Indices: 24945661--24945698 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
24945651 TTCATTTTAA
24945661 AAAATATTT-AATATAT
1 AAAATATTTAAATATAT
24945677 AAAATATTTAAATATAT
1 AAAATATTTAAATATAT
*
24945694 CAAAT
1 AAAAT
24945699 GAATTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATATTTAAATATAT
Found at i:24946478 original size:17 final size:17
Alignment explanation
Indices: 24946456--24946489 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24946446 CTTACAATAA
*
24946456 TTAAATAATATTTAAAT
1 TTAAATAACATTTAAAT
24946473 TTAAATAACATTTAAAT
1 TTAAATAACATTTAAAT
24946490 AATTTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATAACATTTAAAT
Found at i:24946851 original size:27 final size:27
Alignment explanation
Indices: 24946808--24946859 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
24946798 GTTGGGACTA
24946808 GGTGTCGCCTAGTAGGTAGGCACCATT
1 GGTGTCGCCTAGTAGGTAGGCACCATT
24946835 GGTGTCGCCTA-TCAGGTAGGCACCA
1 GGTGTCGCCTAGT-AGGTAGGCACCA
24946860 CCCAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (27 bp):
GGTGTCGCCTAGTAGGTAGGCACCATT
Found at i:24953714 original size:52 final size:52
Alignment explanation
Indices: 24953648--24953769 Score: 147
Period size: 52 Copynumber: 2.3 Consensus size: 52
24953638 TTATTAAATT
* * * * * *
24953648 ACACAATGTATAAATGTTAATAGTTAAATCTTTTAGATTCAAGA-TCAAATTA
1 ACACAATATATAAATGTTAAGAATTAAATCTTTTAAATTCAAAACT-AAACTA
** *
24953700 ACATGATATATAAATGTTAAGAATTAAATTTTTTAAATTCAAAACTAAACTA
1 ACACAATATATAAATGTTAAGAATTAAATCTTTTAAATTCAAAACTAAACTA
24953752 ACACAATATATAAATGTT
1 ACACAATATATAAATGTT
24953770 GAAGGTTAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 57 0.98
53 1 0.02
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (52 bp):
ACACAATATATAAATGTTAAGAATTAAATCTTTTAAATTCAAAACTAAACTA
Found at i:24958193 original size:79 final size:79
Alignment explanation
Indices: 24958080--24958410 Score: 416
Period size: 79 Copynumber: 4.2 Consensus size: 79
24958070 GTGAACCCAG
* ** * *
24958080 CTCTAGTTGGATTAACCAGCAATGCCCA-TCAAATCCTGGCACCCAGTGCCTAGTGGATAAACCG
1 CTCTAGTTGGATTAACCAACAAT-ATCAGTCAAATCCTGGCACCCAGTGCCTAGCGGATAAACTG
*
24958144 TAAATGTGAGCCTAA
65 CAAATGTGAGCCTAA
* * * * *
24958159 CCCTAGTTGGATTAACCAACAATATCAGTTAAATCCTGGCACCCAGTGCCTAACGGGTAAACAGC
1 CTCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGCCTAGCGGATAAACTGC
*
24958224 AAATGTGAGCCTAG
66 AAATGTGAGCCTAA
* * * * * *
24958238 CTTTAGTTGGATTAACCAACAATATTC-GTTAAATCCTGACACCGAGTGCCTAGCGGGTAAATTG
1 CTCTAGTTGGATTAACCAACAATA-TCAGTCAAATCCTGGCACCCAGTGCCTAGCGGATAAACTG
*
24958302 CAAATGTGAGCC-CA
65 CAAATGTGAGCCTAA
* * *
24958316 GTCTAGTTGGATTAACCAACAATATCCGTCAAATCCTGGCACCCAGTGCCTAGTGGATAAACTGC
1 CTCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGCCTAGCGGATAAACTGC
*
24958381 AAATGTGAGCCTAG
66 AAATGTGAGCCTAA
24958395 CTCTAGTTGGATTAAC
1 CTCTAGTTGGATTAAC
24958411 TAACGATTTT
Statistics
Matches: 217, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
77 2 0.01
78 67 0.31
79 146 0.67
80 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (79 bp):
CTCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGCCTAGCGGATAAACTGC
AAATGTGAGCCTAA
Found at i:24958377 original size:157 final size:158
Alignment explanation
Indices: 24958078--24958410 Score: 452
Period size: 157 Copynumber: 2.1 Consensus size: 158
24958068 AAGTGAACCC
* * * *
24958078 AGCTCTAGTTGGATTAACCAGCAATGCCCATCAAATCCTGGCACCCAGTGCCTAGTGGATAAACC
1 AGCTCTAGTTGGATTAACCAACAATACCCATCAAATCCTGACACCCAGTGCCTAGCGGATAAACC
* *
24958143 GTAAATGTGAGCCTAACCCTAGTTGGATTAACCAACAATATCAGTTAAATCCTGGCACCCAGTGC
66 GCAAATGTGAGCCTAACCCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGC
*
24958208 CTAACGGGTAAACAGCAAATGTGAGCCT
131 CTAACGGATAAACAGCAAATGTGAGCCT
* ** * * * * **
24958236 AGCTTTAGTTGGATTAACCAACAATATTCGTTAAATCCTGACACCGAGTGCCTAGCGGGTAAATT
1 AGCTCTAGTTGGATTAACCAACAATACCCATCAAATCCTGACACCCAGTGCCTAGCGGATAAACC
* ** *
24958301 GCAAATGTGAGCC-CAGTCTAGTTGGATTAACCAACAATATCCGTCAAATCCTGGCACCCAGTGC
66 GCAAATGTGAGCCTAACCCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGC
** *
24958365 CTAGTGGATAAACTGCAAATGTGAGCCT
131 CTAACGGATAAACAGCAAATGTGAGCCT
24958393 AGCTCTAGTTGGATTAAC
1 AGCTCTAGTTGGATTAAC
24958411 TAACGATTTT
Statistics
Matches: 151, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
157 87 0.58
158 64 0.42
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (158 bp):
AGCTCTAGTTGGATTAACCAACAATACCCATCAAATCCTGACACCCAGTGCCTAGCGGATAAACC
GCAAATGTGAGCCTAACCCTAGTTGGATTAACCAACAATATCAGTCAAATCCTGGCACCCAGTGC
CTAACGGATAAACAGCAAATGTGAGCCT
Found at i:24961553 original size:16 final size:16
Alignment explanation
Indices: 24961534--24961573 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
24961524 AAATTTGCCA
24961534 TTGTTGAATATGCTTG
1 TTGTTGAATATGCTTG
24961550 TTGTTGAATATGCTTG
1 TTGTTGAATATGCTTG
*
24961566 TTCTTGAA
1 TTGTTGAA
24961574 AGCTTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.20, C:0.07, G:0.23, T:0.50
Consensus pattern (16 bp):
TTGTTGAATATGCTTG
Found at i:24962778 original size:19 final size:20
Alignment explanation
Indices: 24962744--24962781 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
24962734 TGGAATATAG
*
24962744 ACTTGAAATGCTATGTATTA
1 ACTTGAAATACTATGTATTA
24962764 ACTTGAAA-ACTATGTATT
1 ACTTGAAATACTATGTATT
24962782 TTGTGTGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (20 bp):
ACTTGAAATACTATGTATTA
Found at i:24962972 original size:21 final size:21
Alignment explanation
Indices: 24962943--24962996 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
24962933 GACTTGGGTT
*
24962943 GTATTGGTAGTTGAATTGCAA
1 GTATCGGTAGTTGAATTGCAA
24962964 GTATCGGTAGTTGAATTGCAA
1 GTATCGGTAGTTGAATTGCAA
*
24962985 GTATCGATAGTT
1 GTATCGGTAGTT
24962997 ATGTGTTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.37
Consensus pattern (21 bp):
GTATCGGTAGTTGAATTGCAA
Found at i:24963118 original size:19 final size:19
Alignment explanation
Indices: 24963079--24963130 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
24963069 GTAGTTTTTA
*
24963079 GTATCGGTAAAAGTAAGACTT
1 GTATCGGTAGAAG--AGACTT
24963100 GCT-TCGGTAGAAGAGACTT
1 G-TATCGGTAGAAGAGACTT
24963119 GTATCGGTAGAA
1 GTATCGGTAGAA
24963131 CTGTCACTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 16 0.57
21 10 0.36
22 1 0.04
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (19 bp):
GTATCGGTAGAAGAGACTT
Found at i:24975147 original size:47 final size:47
Alignment explanation
Indices: 24975068--24975631 Score: 314
Period size: 45 Copynumber: 12.3 Consensus size: 47
24975058 CAATTTTAGA
* *
24975068 GGTATAAGATTTG-TG-TATGGCTTCAATCTGCCCCTCTGGATTTGG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * * *
24975113 GGTGTAAGATTGGATGCGATGGTTTCAGTCTGCCCATTTGGATTTGT
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * ** *
24975160 GGTATAATATTGGATG-G-TTGCTTCAATCTGCCCCTCTAAATTTAG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * * ** *
24975205 GGTATAAGATTGGATGCGATGGCTTTAATTTACCCTTTTATATTTAG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * * *
24975252 GGTATAAGATTGGATG-G-TGACTTTAATCTACCCTTTTGGATTTAG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * *** * * * *
24975297 GGTGTATGATTAGAT--GATGGTTTTTGTCTACCCTTTTGGATTTAG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * * * * *
24975342 GGTATAAGATTGGATGTGATGGCTTTAATTTACCCTTTTAGATTTGA
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * *
24975389 GGTATAAGATTGGATG-G-TGGC-TCTAATCTACCCTTATGGATTTAG
1 GGTATAAGATTGGATGCGATGGCTTC-AATCTGCCCCTCTGGATTTGG
* * *** * *
24975434 GGTATAAGA-TGGATGTGATGGCTTTAATCCATCCCTCTTGATTTGA
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * * * * * * *
24975480 CGTATAAGACTAGATG-G-TAGCTTTAATCTGCCTCTCAGGACTTGG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * ** * *
24975525 GGTATAAGACTGGATG-G-TAGCTTCAATCTGCCTTTTTAGATTTGG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
* * ** *
24975570 TGTATAAGATTGGTTGTAATGGCTTCAATCTGCCCTTCTGGATTTGG
1 GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
*
24975617 GGTATAAGACTGGAT
1 GGTATAAGATTGGAT
24975632 ACAGTTATGT
Statistics
Matches: 413, Mismatches: 92, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
44 8 0.02
45 216 0.52
46 33 0.08
47 156 0.38
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39
Consensus pattern (47 bp):
GGTATAAGATTGGATGCGATGGCTTCAATCTGCCCCTCTGGATTTGG
Done.