Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 84 of 125
Found at i:26047094 original size:30 final size:30
Alignment explanation
Indices: 26047060--26047347 Score: 196
Period size: 30 Copynumber: 9.7 Consensus size: 30
26047050 ATTTTATTTA
* *
26047060 AAAATCACATTATAACCCCTAAACTTTTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* **
26047090 AAAATTACATTTTAACCCTTAAACTTCACC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* * * * *
26047120 ATAAA-TAAAGTATAACCTCTAAACTTCTT-A
1 A-AAATTACATTTTAACCCCTAAACTT-TTCC
* * * *
26047150 AAAAATATATTTTAA--CCTTAA-TCTTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
**
26047177 TAAAATTTACATTTTGGCCCCTTAAACTTTTCC
1 -AAAA-TTACATTTTAACCCC-TAAACTTTTCC
* ** *
26047210 AAAATTACATTTTGA-GTCTAAACTTTTCA
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* *
26047239 AAAATTACATTTTAA-CCTTAAACTTTTCT
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* *
26047268 AAACTTACATTTTAACCCCTAAACTTTTCT
1 AAAATTACATTTTAACCCCTAAACTTTTCC
* * * * *
26047298 AAAATTATATTTTGACCCCCAAAATTCTCC
1 AAAATTACATTTTAACCCCTAAACTTTTCC
*
26047328 AAAACTT-CATTTTGACCCCT
1 AAAA-TTACATTTTAACCCCT
26047348 TTTTTTCTTT
Statistics
Matches: 200, Mismatches: 46, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
26 2 0.01
27 1 0.00
28 8 0.04
29 58 0.29
30 102 0.51
31 17 0.09
32 7 0.04
33 5 0.03
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCTAAACTTTTCC
Found at i:26047237 original size:29 final size:29
Alignment explanation
Indices: 26047176--26047312 Score: 134
Period size: 29 Copynumber: 4.6 Consensus size: 29
26047166 CTTAATCTTC
**
26047176 CTAAAATTTACATTTTGGCCCCTTAAACTTTT
1 CTAAAA-TTACATTTT-GAACC-TAAACTTTT
* **
26047208 CCAAAATTACATTTTGAGTCTAAACTTTT
1 CTAAAATTACATTTTGAACCTAAACTTTT
*
26047237 CAAAAATTACATTTT-AACCTTAAACTTTT
1 CTAAAATTACATTTTGAACC-TAAACTTTT
*
26047266 CTAAACTTACATTTT-AACCCCTAAACTTTT
1 CTAAAATTACATTTTGAA--CCTAAACTTTT
*
26047296 CTAAAATTATATTTTGA
1 CTAAAATTACATTTTGA
26047313 CCCCCAAAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.02
29 47 0.52
30 24 0.27
31 12 0.13
32 5 0.06
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (29 bp):
CTAAAATTACATTTTGAACCTAAACTTTT
Found at i:26047242 original size:89 final size:88
Alignment explanation
Indices: 26047137--26047312 Score: 230
Period size: 89 Copynumber: 2.0 Consensus size: 88
26047127 AAGTATAACC
* * * **
26047137 TCTAAACTTCTTAAAAAATATATTTTAACCTTAATC-TTCCTAAAATTTACATTTTGGCCCCTTA
1 TCTAAACTTCTTAAAAAATACATTTTAACCTTAAACTTTCCT-AAACTTACATTTTAACCCC-TA
26047201 AACTTTTCCAAAATTACATTTTGAG
64 AACTTTTCCAAAATTACATTTTGAG
* *
26047226 TCTAAACTT-TTCAAAAATTACATTTTAACCTTAAACTTTTCTAAACTTACATTTTAACCCCTAA
1 TCTAAACTTCTT-AAAAAATACATTTTAACCTTAAACTTTCCTAAACTTACATTTTAACCCCTAA
* *
26047290 ACTTTTCTAAAATTATATTTTGA
65 ACTTTTCCAAAATTACATTTTGA
26047313 CCCCCAAAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
88 26 0.34
89 46 0.61
90 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.43
Consensus pattern (88 bp):
TCTAAACTTCTTAAAAAATACATTTTAACCTTAAACTTTCCTAAACTTACATTTTAACCCCTAAA
CTTTTCCAAAATTACATTTTGAG
Found at i:26047339 original size:89 final size:89
Alignment explanation
Indices: 26047149--26047340 Score: 201
Period size: 89 Copynumber: 2.2 Consensus size: 89
26047139 TAAACTTCTT
* * * * **
26047149 AAAAAATATATTTTAACCTTAATCTTCCTAAAATTTACATTTTGGCCCCTTAAACTTTTCCAAAA
1 AAAAATTACATTTTAACCTTAAACTTCCTAAAACTTACATTTTAACCCCTTAAACTTTTCCAAAA
** * * *
26047214 TTACATTTTGAGTCTAAACTTTTC
66 TTACATTTTGACCCCAAAATTTCC
* *
26047238 AAAAATTACATTTTAACCTTAAACTTTTCT-AAACTTACATTTTAACCCC-TAAACTTTTCTAAA
1 AAAAATTACATTTTAACCTTAAAC-TTCCTAAAACTTACATTTTAACCCCTTAAACTTTTCCAAA
*
26047301 ATTATATTTTGACCCCCAAAATTCTCC
65 ATTACATTTTGA-CCCCAAAATT-TCC
*
26047328 AAAACTT-CATTTT
1 AAAAATTACATTTT
26047341 GACCCCTTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
88 24 0.28
89 49 0.58
90 12 0.14
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (89 bp):
AAAAATTACATTTTAACCTTAAACTTCCTAAAACTTACATTTTAACCCCTTAAACTTTTCCAAAA
TTACATTTTGACCCCAAAATTTCC
Found at i:26057245 original size:37 final size:38
Alignment explanation
Indices: 26057204--26057282 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
26057194 TCATGTTTAA
26057204 GCAGTGACA-TTCCTAGG-TGCAA-TTAAAGAATACTTAT
1 GCAGTGACAGTT-CT-GGATGCAATTTAAAGAATACTTAT
* * *
26057241 GCAGTGATAGTTCTGGATGCAATTTGAAGAATATTTAT
1 GCAGTGACAGTTCTGGATGCAATTTAAAGAATACTTAT
26057279 GCAG
1 GCAG
26057283 CAACAGTCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 2 0.06
37 15 0.42
38 19 0.53
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.32
Consensus pattern (38 bp):
GCAGTGACAGTTCTGGATGCAATTTAAAGAATACTTAT
Found at i:26057362 original size:37 final size:37
Alignment explanation
Indices: 26057321--26057391 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
26057311 TTCCTGCGGT
** * *
26057321 GACAGTTTTGGGTGCAATTTGGAAGTGCTCATGTGGC
1 GACAGTTTTGGACGCAATCTAGAAGTGCTCATGTGGC
26057358 GACAGTTTTGGACGCAATCTAGAAGTGCTCATGT
1 GACAGTTTTGGACGCAATCTAGAAGTGCTCATGT
26057392 AGTGACATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (37 bp):
GACAGTTTTGGACGCAATCTAGAAGTGCTCATGTGGC
Found at i:26058484 original size:17 final size:17
Alignment explanation
Indices: 26058448--26058486 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26058438 AGATGCAGCT
* *
26058448 ACAATAAAAATATAGTG
1 ACAATAAAAATACAGGG
*
26058465 ACAATAAAAATGCAGGG
1 ACAATAAAAATACAGGG
26058482 ACAAT
1 ACAAT
26058487 TATACTACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.18
Consensus pattern (17 bp):
ACAATAAAAATACAGGG
Found at i:26061695 original size:37 final size:38
Alignment explanation
Indices: 26061635--26061732 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
26061625 GTACATGTTC
* *
26061635 ATGCAGCGACATTCTTGGTTGCAA-TTGAAGAATACTT
1 ATGCAGCGACATTCTTGGATGCAATTTGAAAAATACTT
* *
26061672 ATGCAGCGATAGTTC-TGGATGCAATTTGAAAAATATTT
1 ATGCAGCGACA-TTCTTGGATGCAATTTGAAAAATACTT
* * *
26061710 ATGCAGCCACAGTCTTGGGTGCA
1 ATGCAGCGACATTCTTGGATGCA
26061733 TTCAAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 20 0.40
38 30 0.60
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (38 bp):
ATGCAGCGACATTCTTGGATGCAATTTGAAAAATACTT
Found at i:26063457 original size:31 final size:31
Alignment explanation
Indices: 26063422--26063481 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
26063412 TTTTCAGAGA
*
26063422 AAAATAAAAAAGAAT-TGGTTTTTTGAAAAGT
1 AAAATAAAAAA-AATGTGATTTTTTGAAAAGT
* *
26063453 AAAATGAAAAAAATGTGATTTTTTTAAAA
1 AAAATAAAAAAAATGTGATTTTTTGAAAA
26063482 AAATTGTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 22 0.88
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (31 bp):
AAAATAAAAAAAATGTGATTTTTTGAAAAGT
Found at i:26066576 original size:370 final size:371
Alignment explanation
Indices: 26065839--26066582 Score: 1294
Period size: 370 Copynumber: 2.0 Consensus size: 371
26065829 GAATCCGGCC
* **
26065839 TACAGCTGCTTCACCTTCAAAAATCTAGATTTAGTACCCACCATAGAGGAATACATAGTATTGCT
1 TACAGCTGCTTCACCTTCAAAAATCTAGATTTAGTACCCACCATAGAGGAATACACAACATTGCT
*
26065904 TTGCTGCCCGAGGATTCAAGTTAATAAGGCTTACTCGAGGGCTACTAATGTCCCGACTTTTCTCA
66 TCGCTGCCCGAGGATTCAAGTTAATAAGGCTTACTCGAGGGCTACTAATGTCCCGACTTTTCTCA
*
26065969 AGCGATTGATAAACATTATGGGGATGAGTGAGGAATGGGTTTCAGCACGAATTAAGGTGAAAGGC
131 AGCGATTGATAAACATTATGAGGATGAGTGAGGAATGGGTTTCAGCACGAATTAAGGTGAAAGGC
* *
26066034 GACCATAAGTGCATCACTTGGAAAGGCTTGCGAGATCTGATCCTAGCACATCTGGATCAAATAAA
196 GACCATAAGTGCATCACTTGGAAAGGCTTGCAAGATCTGATCCTAGCACATCCGGATCAAATAAA
26066099 GAAAGTTGACATTTTTGCCTTGAGTCTATACAGCTTGGTGGTCTTTCCTAAAGCATTGGGGCATA
261 GAAAGTTGACATTTTTGCCTTGAGTCTATACAGCTTGGTGGTCTTTCCTAAAGCATTGGGGCATA
* *
26066164 TAGAAGACATAGTTACCGACTTGTTTAATCATCTCGACAAAAGAGT
326 TAGAAGACATAGTTACCGACCTGTTTAATCATCTCAACAAAAGAGT
* *
26066210 TACAGCTGCTTCACCTTCGAAAATGTAGATTTAGTACCCACCATAGA-GAATACACAACATTGCT
1 TACAGCTGCTTCACCTTCAAAAATCTAGATTTAGTACCCACCATAGAGGAATACACAACATTGCT
*
26066274 TCGCTGCCCGAGGATTCAAGTTAATAAGGCTTACTCGAGGGCTCCTAATGTCCCGACTTTTCTCA
66 TCGCTGCCCGAGGATTCAAGTTAATAAGGCTTACTCGAGGGCTACTAATGTCCCGACTTTTCTCA
* *
26066339 AGCGATTGATAAACATTATGAGGATGAGTGAGGAATGGGTTTCGGCATGAATTAAGGTGAAAGGC
131 AGCGATTGATAAACATTATGAGGATGAGTGAGGAATGGGTTTCAGCACGAATTAAGGTGAAAGGC
*
26066404 GACCATAAGTGCATCACTTGG-AAGAGCTTGCAAGATCTGATCCTAGCACATCCGGATCCAATAA
196 GACCATAAGTGCATCACTTGGAAAG-GCTTGCAAGATCTGATCCTAGCACATCCGGATCAAATAA
* *
26066468 AGAAAGTTGACATTTTTGCCTTGAGTCTGTACGGCTTGGTGGTCTTTCCTAAAGCATTGGGGCAT
260 AGAAAGTTGACATTTTTGCCTTGAGTCTATACAGCTTGGTGGTCTTTCCTAAAGCATTGGGGCAT
* *
26066533 ATAGAAGACATAGTTACCGACCTGTTTGATCGTCTCAACAAAAGAGT
325 ATAGAAGACATAGTTACCGACCTGTTTAATCATCTCAACAAAAGAGT
26066580 TAC
1 TAC
26066583 TCATGTTCCG
Statistics
Matches: 353, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
369 3 0.01
370 305 0.86
371 45 0.13
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (371 bp):
TACAGCTGCTTCACCTTCAAAAATCTAGATTTAGTACCCACCATAGAGGAATACACAACATTGCT
TCGCTGCCCGAGGATTCAAGTTAATAAGGCTTACTCGAGGGCTACTAATGTCCCGACTTTTCTCA
AGCGATTGATAAACATTATGAGGATGAGTGAGGAATGGGTTTCAGCACGAATTAAGGTGAAAGGC
GACCATAAGTGCATCACTTGGAAAGGCTTGCAAGATCTGATCCTAGCACATCCGGATCAAATAAA
GAAAGTTGACATTTTTGCCTTGAGTCTATACAGCTTGGTGGTCTTTCCTAAAGCATTGGGGCATA
TAGAAGACATAGTTACCGACCTGTTTAATCATCTCAACAAAAGAGT
Found at i:26076541 original size:208 final size:208
Alignment explanation
Indices: 26076076--26077029 Score: 1231
Period size: 208 Copynumber: 4.6 Consensus size: 208
26076066 GCAATGGAGT
26076076 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCA-ATCA
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGG-AGATCA
* * * * * *
26076140 TCTTCCTGATAAGATACAGAGAAGTAGACCAAATCGATGAAGTGAAGCTCAATGTAAGTGAAACT
65 TCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAACT
* * *
26076205 TCAAACCCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTTC
130 TCAAA-CCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCC
* ** *
26076270 TGACGAGACGCAGGG
194 TGATGAGATACAGAG
** * * * * * *
26076285 AAGCAAATCAAATCCGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAATAATAAGGAGGTTAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGAGATCAT
*
26076350 CTTCTTGATGAGATACTGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAACTT
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAACTT
* *
26076415 CAAACCCCATC-TTCTTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCA
131 CAAACCCCATCTTTC-TGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCT
26076479 GATGAGATACAGAG
195 GATGAGATACAGAG
* * * *
26076493 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGATAAGTGGATTAAAACAATGAGGCGGTCAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGAGATCAT
* *
26076558 CTTCTTGATGAGATACTGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTT
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAACTT
*
26076623 CAAACCCCTATCTTTCTGATGAGATACAGAGAAGTGGGGTCAAAGCAATAAAGTGGTGACCTTCC
131 CAAACCCC-ATCTTTCTGATGAGATACAGAGAAGT-GGGTCAAAGCAATAAAGTGGTCACCTTCC
*
26076688 TGATGAGTTACAGAG
194 TGATGAGATACAGAG
* * * * *
26076703 AAGTGAATCAAACTCCATCTTCCTTATAAGATACAGAGAAGTGGATT-AGATCAATGAGGCGATC
1 AAGTGAACCAAA-TCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAAT-AATGAGGAGATC
* * * *
26076767 ATCTT-TCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGTTCAATACGAGCGAAA
64 ATCTTCT-TGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAA
* * *
26076831 TTTTAAACCCCATC-TTCGTGATAAGATACAGAGAAGTGGGTCAAAGCAATAAAG-GAGTCATCC
128 CTTCAAACCCCATCTTTC-TGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTG-GTCA-CC
*
26076894 -TCCTGATGAGATACAAAG
190 TTCCTGATGAGATACAGAG
* * * * *
26076912 AAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGGTTAAAATAATGAGGCGACCAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGAGATCAT
* ** * * * *
26076977 CTTCTTGATGATATGTAGAGAAGTTGAGCAAACCAATGAAAC-AGAGCTCAATA
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGA-AGCTCAATA
26077030 AAAGATACAG
Statistics
Matches: 657, Mismatches: 74, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
207 4 0.01
208 274 0.42
209 191 0.29
210 81 0.12
211 107 0.16
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (208 bp):
AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGAGATCAT
CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATATGAGTGAAACTT
CAAACCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCTG
ATGAGATACAGAG
Found at i:26076568 original size:85 final size:85
Alignment explanation
Indices: 26076421--26076591 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
26076411 ACTTCAAACC
* * * * *
26076421 CCATCTTCTTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCAGATGAGA
1 CCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCACCTTCCAGATGAGA
26076486 TACAGAGAAGT-GAACCAAAT
66 TACAGAGAAGTAG-ACCAAAT
* * * * * **
26076506 CCATCTTCCTGATGAGATACAGATAAGTGGATTAAAACAATGAGGCGGTCATCTTCTTGATGAGA
1 CCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCACCTTCCAGATGAGA
*
26076571 TACTGAGAAGTAGACCAAAT
66 TACAGAGAAGTAGACCAAAT
26076591 C
1 C
26076592 AATGAAGCGA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
85 71 0.99
86 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (85 bp):
CCATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCACCTTCCAGATGAGA
TACAGAGAAGTAGACCAAAT
Found at i:26076945 original size:419 final size:417
Alignment explanation
Indices: 26076076--26077016 Score: 1323
Period size: 419 Copynumber: 2.3 Consensus size: 417
26076066 GCAATGGAGT
*
26076076 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCAATCAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGATCAT
* * * *
26076141 CTTCCTGATAAGATACAGAGAAGTAGACCAAATCGATGAAGTGAAGCTCAATGTAAGTGAAACTT
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTAAGTGAAACTT
* * *
26076206 CAAACCCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTTCT
131 CAAACCCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCT
* * * *
26076271 GACGAGACGCAGGGAAGCAAATCAAATCCGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAAT
196 GACGAGACACAGAGAAGCAAATCAAATCCATCTTCCTGATAAGATACAGAGAAGTAGATTAAAAT
* * * *
26076336 AATAAGGAGGTTATCTTCTTGATGAGATACTGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAA
261 AATAAGGAGATCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAA
* * * * *
26076401 TATGAGTGAAACTTCAAACCCCATCTTCTTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAG
326 TACGAGCGAAACTTCAAACCCCATCTTCGTGATAAGATACAGAGAAGTGGGTCAAAGCAATAAAG
*
26076466 TGGTCACCTTCCAGATGAGATACAGAG
391 TGGTCACCTTCCAGATGAGATACAAAG
* * *
26076493 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGATAAGTGGATTAAAACAATGAGGCGGTCAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGATCAT
* *
26076558 CTTCTTGATGAGATACTGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTGAGTGAAACTT
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTAAGTGAAACTT
* *
26076623 CAAACCCCTATCTTTCTGATGAGATACAGAGAAGTGGGGTCAAAGCAATAAAGTGGTGACCTTCC
131 CAAACCCCCATCTTTCTGATGAGATACAGAGAAGT-GGGTCAAAGCAATAAAGTGGTCACCTTCC
* ** ** * * *
26076688 TGATGAGTTACAGAGAAGTGAATCAAACTCCATCTTCCTTATAAGATACAGAGAAGTGGATT-AG
195 TGACGAGACACAGAGAAGCAAATCAAA-TCCATCTTCCTGATAAGATACAGAGAAGTAGATTAAA
* * *
26076752 ATCAATGAGGCGATCATCTT-TCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGT
259 AT-AATAAGGAGATCATCTTCT-TGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGC
* *
26076816 TCAATACGAGCGAAATTTTAAACCCCATCTTCGTGATAAGATACAGAGAAGTGGGTCAAAGCAAT
322 TCAATACGAGCGAAACTTCAAACCCCATCTTCGTGATAAGATACAGAGAAGTGGGTCAAAGCAAT
*
26076881 AAAG-GAGTCATCC-TCCTGATGAGATACAAAG
387 AAAGTG-GTCA-CCTTCCAGATGAGATACAAAG
* * * *
26076912 AAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGGTTAAAATAATGAGGCGACCAT
1 AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGATCAT
* ** * * *
26076977 CTTCTTGATGATATGTAGAGAAGTTGAGCAAACCAATGAA
66 CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAA
26077017 ACAGAGCTCA
Statistics
Matches: 461, Mismatches: 57, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
417 154 0.33
418 50 0.11
419 255 0.55
420 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (417 bp):
AAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGATCAT
CTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGCTCAATGTAAGTGAAACTT
CAAACCCCCATCTTTCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCCT
GACGAGACACAGAGAAGCAAATCAAATCCATCTTCCTGATAAGATACAGAGAAGTAGATTAAAAT
AATAAGGAGATCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAA
TACGAGCGAAACTTCAAACCCCATCTTCGTGATAAGATACAGAGAAGTGGGTCAAAGCAATAAAG
TGGTCACCTTCCAGATGAGATACAAAG
Found at i:26077319 original size:14 final size:15
Alignment explanation
Indices: 26077293--26077322 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26077283 CATTTACATT
26077293 CAAATTAAAAAAGCC
1 CAAATTAAAAAAGCC
26077308 CAAATT-AAAAAGCC
1 CAAATTAAAAAAGCC
26077322 C
1 C
26077323 GATACTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.57, C:0.23, G:0.07, T:0.13
Consensus pattern (15 bp):
CAAATTAAAAAAGCC
Found at i:26078797 original size:20 final size:18
Alignment explanation
Indices: 26078764--26078800 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
26078754 TTTAGTATTA
26078764 TTTTATTTATTCAATTTT
1 TTTTATTTATTCAATTTT
26078782 TTTTAATTTGATTCAATTT
1 TTTT-ATTT-ATTCAATTT
26078801 AAATTGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTATTTATTCAATTTT
Found at i:26080640 original size:100 final size:99
Alignment explanation
Indices: 26080497--26080774 Score: 294
Period size: 100 Copynumber: 2.8 Consensus size: 99
26080487 TACGAAGGCG
* * * *
26080497 AATCCTCATCTCTCTAAGTTGTAATAGAGCAGGATGAAGCTACAAAACCAAGCCCTATACCCTTG
1 AATCCTCATATCTCTAAGTTGCAATAGAGCAAGATGAAGCTACAAAACCAA-TCCTATACCCTTG
*
26080562 AAGTTGCAGTGGGTTAG-ACTAAAGTCATGAAAGCA
65 AAGTTGCAGTGGG-TAGAACTAAAGTCATAAAAGCA
* ** *
26080597 AATCCTCATATCTCTGAAGTTGCAGTAGAGCAAGATGAA-CTACAAAACCAAATTTTATACCCCT
1 AATCCTCATATCTCT-AAGTTGCAATAGAGCAAGATGAAGCTACAAAACC-AATCCTATACCCTT
* * *
26080661 AAAGTTGCAGAGGGTCGAACTAAAGTCATAAAAGCA
64 GAAGTTGCAGTGGGTAGAACTAAAGTCATAAAAGCA
* * * * * *
26080697 AAT-CT-TTATCTCCTTAAAGTTGCAATGGAGCAAGATAAAGCTACAACATCGAATCCTATATCC
1 AATCCTCATATCT-C-T-AAGTTGCAATAGAGCAAGATGAAGCTACAA-AACCAATCCTATACCC
26080760 TTGAAGTTGCAGTGG
62 TTGAAGTTGCAGTGG
26080775 ATTGGATTGA
Statistics
Matches: 146, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
98 5 0.03
99 5 0.03
100 85 0.58
101 49 0.34
102 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (99 bp):
AATCCTCATATCTCTAAGTTGCAATAGAGCAAGATGAAGCTACAAAACCAATCCTATACCCTTGA
AGTTGCAGTGGGTAGAACTAAAGTCATAAAAGCA
Found at i:26082592 original size:12 final size:12
Alignment explanation
Indices: 26082553--26082590 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
26082543 TTATATCCCC
26082553 ATTT-TTATTTT
1 ATTTATTATTTT
26082564 ATTTATTA-TTT
1 ATTTATTATTTT
26082575 ATTTATGTATTTT
1 ATTTAT-TATTTT
26082588 ATT
1 ATT
26082591 ATTTTGTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 13 0.54
12 5 0.21
13 6 0.25
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
ATTTATTATTTT
Found at i:26082668 original size:10 final size:11
Alignment explanation
Indices: 26082649--26082679 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
26082639 AATTGTTTGT
26082649 TTATTTATTTA
1 TTATTTATTTA
26082660 TTA-TTATTTA
1 TTATTTATTTA
26082670 TTATTTATTT
1 TTATTTATTT
26082680 GTGTGTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:26084132 original size:109 final size:110
Alignment explanation
Indices: 26083947--26084225 Score: 285
Period size: 109 Copynumber: 2.5 Consensus size: 110
26083937 TGGTGTTACA
* * *
26083947 AACGGAGCATCCACAATTTCCTCTAATAACTTTTATCTGCAAGGGGTTGTGGATCCTCAATCAAT
1 AACGGAGCATCCACAATTTCCTCTAACAACTTTTATCTGCAAGGGATTATGGATCCTCAATCAAT
* * ** *
26084012 TCACTGTGTATTCATAGATTAGTAGATTCCATTTGCTACTACATG
66 TCACTGCGTATTCACAGATTAGTAGATTCCAACTGCGACTACATG
* * * * * *
26084057 AACGGAGCATCCACGA-TTCCTTTGACAGCTTTTATCTAG-GAGGGATTATGGATCCTGAATCAA
1 AACGGAGCATCCACAATTTCCTCTAACAACTTTTATCT-GCAAGGGATTATGGATCCTCAATCAA
*
26084120 -TCTACTGCGTATTCACAGATTAGTAGATTCCAACTGCGACTATATG
65 TTC-ACTGCGTATTCACAGATTAGTAGATTCCAACTGCGACTACATG
* * ** * * * ** * *
26084166 AACGAAGCATCTATGATTTTCTCTAATAGCTTTTATCTGTGAGGGGTTGTGGATCCTCAA
1 AACGGAGCATCCACAATTTCCTCTAACAACTTTTATCTGCAAGGGATTATGGATCCTCAA
26084226 CCGCTCGGTA
Statistics
Matches: 140, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
108 2 0.01
109 88 0.63
110 50 0.36
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (110 bp):
AACGGAGCATCCACAATTTCCTCTAACAACTTTTATCTGCAAGGGATTATGGATCCTCAATCAAT
TCACTGCGTATTCACAGATTAGTAGATTCCAACTGCGACTACATG
Found at i:26084725 original size:3 final size:3
Alignment explanation
Indices: 26084717--26084757 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
26084707 TCTCGCTAAC
*
26084717 TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TCA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
26084758 TTACTAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26084760 original size:19 final size:19
Alignment explanation
Indices: 26084720--26084758 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26084710 CGCTAACTTA
*
26084720 TTATTATTATTATTATTAT
1 TTATTATTATCATTATTAT
26084739 TTATTATTATCATT-TTAT
1 TTATTATTATCATTATTAT
26084757 TT
1 TT
26084759 TACTAAGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTATTATCATTATTAT
Found at i:26084862 original size:38 final size:40
Alignment explanation
Indices: 26084820--26084903 Score: 100
Period size: 42 Copynumber: 2.1 Consensus size: 40
26084810 GCATGTTATT
* *
26084820 TATTAATA-TT-ATTTACTATCGTTAATGATTTAAGATTA
1 TATTAATATTTAATTTACTAGCGTTAATGAATTAAGATTA
* *
26084858 TATTAATATTTAGCATTTATTAGCGTTAATTAATTAAGATTA
1 TATTAATATTTA--ATTTACTAGCGTTAATGAATTAAGATTA
26084900 TATT
1 TATT
26084904 TATTTGTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 8 0.21
39 2 0.05
42 28 0.74
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (40 bp):
TATTAATATTTAATTTACTAGCGTTAATGAATTAAGATTA
Found at i:26086752 original size:16 final size:18
Alignment explanation
Indices: 26086713--26086754 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
26086703 ATAAATAAGC
26086713 ATAATAAATATTTATAATA
1 ATAAT-AATATTTATAATA
*
26086732 TTAATAATA-TTA-AATA
1 ATAATAATATTTATAATA
26086748 ATAATAA
1 ATAATAA
26086755 AAAGAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 10 0.48
17 3 0.14
18 4 0.19
19 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAATATTTATAATA
Found at i:26087866 original size:29 final size:30
Alignment explanation
Indices: 26087790--26088013 Score: 185
Period size: 30 Copynumber: 7.6 Consensus size: 30
26087780 CCCAAAAGGT
* **
26087790 CCCT-AAACTATC-CAAAAATCATATTTCAA
1 CCCTCAAACT-TCTCAAAAATCACATTTTTA
* * *
26087819 CCC-CTAAACTTTTCCAAAATCACATTTTAA
1 CCCTC-AAACTTCTCAAAAATCACATTTTTA
*
26087849 CCCTCAAACTTCTCAAAAAAT-ATATTTTTA
1 CCCTCAAACTTCTC-AAAAATCACATTTTTA
* * *
26087879 CCCTCAAACTTCTTAAAAATTACATTTTTG
1 CCCTCAAACTTCTCAAAAATCACATTTTTA
* *
26087909 CCC-CTAAACTTC-CAAAAATTACATTTTTG
1 CCCTC-AAACTTCTCAAAAATCACATTTTTA
* * *
26087938 CCCTCGAACTTCTCAAAAATTACA-TTTTG
1 CCCTCAAACTTCTCAAAAATCACATTTTTA
* * *
26087967 CCCCCAAGCTTC-CAAAAATCACATTTTTG
1 CCCTCAAACTTCTCAAAAATCACATTTTTA
*
26087996 CCCTCGAACTTCTCAAAA
1 CCCTCAAACTTCTCAAAA
26088014 CCACTTTTTT
Statistics
Matches: 164, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
28 10 0.06
29 64 0.39
30 84 0.51
31 6 0.04
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.33
Consensus pattern (30 bp):
CCCTCAAACTTCTCAAAAATCACATTTTTA
Found at i:26087957 original size:30 final size:30
Alignment explanation
Indices: 26087820--26088013 Score: 218
Period size: 30 Copynumber: 6.6 Consensus size: 30
26087810 ATATTTCAAC
* * * **
26087820 CCCT-AAACTTTTCCAAAATCACATTTTAA
1 CCCTCAAACTTCTCAAAAATTACATTTTTG
* * *
26087849 CCCTCAAACTTCTCAAAAAATATATTTTTA
1 CCCTCAAACTTCTCAAAAATTACATTTTTG
*
26087879 CCCTCAAACTTCTTAAAAATTACATTTTTG
1 CCCTCAAACTTCTCAAAAATTACATTTTTG
26087909 CCC-CTAAACTTC-CAAAAATTACATTTTTG
1 CCCTC-AAACTTCTCAAAAATTACATTTTTG
*
26087938 CCCTCGAACTTCTCAAAAATTACA-TTTTG
1 CCCTCAAACTTCTCAAAAATTACATTTTTG
* * *
26087967 CCCCCAAGCTTC-CAAAAATCACATTTTTG
1 CCCTCAAACTTCTCAAAAATTACATTTTTG
*
26087996 CCCTCGAACTTCTCAAAA
1 CCCTCAAACTTCTCAAAA
26088014 CCACTTTTTT
Statistics
Matches: 140, Mismatches: 19, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
28 10 0.07
29 58 0.41
30 72 0.51
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.34
Consensus pattern (30 bp):
CCCTCAAACTTCTCAAAAATTACATTTTTG
Found at i:26087979 original size:58 final size:58
Alignment explanation
Indices: 26087825--26088013 Score: 234
Period size: 58 Copynumber: 3.2 Consensus size: 58
26087815 TCAACCCCTA
* * * * * * * * *
26087825 AACTTTTCCAAAATCACATTTTAACCCTCAAACTTCTCAAAAAATATATTTTTACCCTCA
1 AACTTCTCAAAAATTACATTTT-GCCCCCAAACTTC-CAAAAATTACATTTTTGCCCTCG
* *
26087885 AACTTCTTAAAAATTACATTTTTGCCCCTAAACTTCCAAAAATTACATTTTTGCCCTCG
1 AACTTCTCAAAAATTACA-TTTTGCCCCCAAACTTCCAAAAATTACATTTTTGCCCTCG
* *
26087944 AACTTCTCAAAAATTACATTTTGCCCCCAAGCTTCCAAAAATCACATTTTTGCCCTCG
1 AACTTCTCAAAAATTACATTTTGCCCCCAAACTTCCAAAAATTACATTTTTGCCCTCG
26088002 AACTTCTCAAAA
1 AACTTCTCAAAA
26088014 CCACTTTTTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
58 49 0.43
59 36 0.32
60 24 0.21
61 4 0.04
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.34
Consensus pattern (58 bp):
AACTTCTCAAAAATTACATTTTGCCCCCAAACTTCCAAAAATTACATTTTTGCCCTCG
Found at i:26088023 original size:29 final size:29
Alignment explanation
Indices: 26087825--26088022 Score: 138
Period size: 29 Copynumber: 6.8 Consensus size: 29
26087815 TCAACCCCTA
* * ** *
26087825 AACTTTTCCAAAATCACATTTTAACCCTCA
1 AACTTCTCAAAAATCAC-TTTTTGCCCTCG
* * *
26087855 AACTTCTCAAAAAAT-ATATTTTTACCCTCA
1 AACTTCTC-AAAAATCA-CTTTTTGCCCTCG
* * *
26087885 AACTTCTTAAAAATTACATTTTTGCCC-CTA
1 AACTTCTCAAAAATCAC-TTTTTGCCCTC-G
*
26087915 AACTTC-CAAAAATTACATTTTTGCCCTCG
1 AACTTCTCAAAAATCAC-TTTTTGCCCTCG
* * *
26087944 AACTTCTCAAAAATTACATTTTGCCC-CC
1 AACTTCTCAAAAATCACTTTTTGCCCTCG
26087972 AAGCTTC-CAAAAATCACATTTTTGCCCTCG
1 AA-CTTCTCAAAAATCAC-TTTTTGCCCTCG
*
26088002 AACTTCTC-AAAACCACTTTTT
1 AACTTCTCAAAAATCACTTTTT
26088023 TAACCCAAAT
Statistics
Matches: 142, Mismatches: 15, Indels: 24
0.78 0.08 0.13
Matches are distributed among these distances:
28 17 0.12
29 63 0.44
30 57 0.40
31 5 0.04
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.35
Consensus pattern (29 bp):
AACTTCTCAAAAATCACTTTTTGCCCTCG
Found at i:26088482 original size:97 final size:97
Alignment explanation
Indices: 26088364--26088557 Score: 316
Period size: 97 Copynumber: 2.0 Consensus size: 97
26088354 AAAATATTTA
* * * * *
26088364 AAATCGAGGCAATATTCCTTTATTTCTGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCACGAT
1 AAATCGAGGCAATATTCCTTTATCTCTAGTTTTGAAAATTGGTGCCTTAACTTACCAGGCACGAC
26088429 TTTTCTTCAAACCGGGATAATCGAATACCCTT
66 TTTTCTTCAAACCGGGATAATCGAATACCCTT
* * *
26088461 AAATCGAGGCAATGTTTCTTTATCTCTAGTTTTGAAAATTGGTGCCTTAACTTACCAGGCGCGAC
1 AAATCGAGGCAATATTCCTTTATCTCTAGTTTTGAAAATTGGTGCCTTAACTTACCAGGCACGAC
26088526 TTTTCTTCAAACCGGGATAATCGAATACCCTT
66 TTTTCTTCAAACCGGGATAATCGAATACCCTT
26088558 TTGCAAGGTT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATCTCTAGTTTTGAAAATTGGTGCCTTAACTTACCAGGCACGAC
TTTTCTTCAAACCGGGATAATCGAATACCCTT
Found at i:26090423 original size:18 final size:18
Alignment explanation
Indices: 26090402--26090444 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26090392 TAAAAATATA
*
26090402 TTTAAATAAATTCAAGAT
1 TTTAAAAAAATTCAAGAT
*
26090420 TTTAAAAAAATTCCAGA-
1 TTTAAAAAAATTCAAGAT
26090437 TTTAAAAA
1 TTTAAAAA
26090445 TGAATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (18 bp):
TTTAAAAAAATTCAAGAT
Found at i:26090490 original size:18 final size:18
Alignment explanation
Indices: 26090469--26090508 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26090459 TTAAGTAATA
*
26090469 AAAAT-TGGGATTTAATTT
1 AAAATATGGAATTT-ATTT
26090487 AAAATATGGAATTTATTT
1 AAAATATGGAATTTATTT
26090505 AAAA
1 AAAA
26090509 ATATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (18 bp):
AAAATATGGAATTTATTT
Found at i:26090509 original size:19 final size:20
Alignment explanation
Indices: 26090467--26090512 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
26090457 ATTTAAGTAA
*
26090467 TAAAAAT-TGGGATTTAATT
1 TAAAAATATGGAATTTAATT
26090486 T-AAAATATGGAATTT-ATT
1 TAAAAATATGGAATTTAATT
26090504 TAAAAATAT
1 TAAAAATAT
26090513 TTTTTATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (20 bp):
TAAAAATATGGAATTTAATT
Found at i:26090557 original size:17 final size:16
Alignment explanation
Indices: 26090508--26090559 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
26090498 TTTATTTAAA
26090508 AATATTTTTTATAT-T
1 AATATTTTTTATATAT
* * *
26090523 ACTATTTTTGAAATTAT
1 AATATTTTTTATA-TAT
26090540 AATATTTATTTATATAT
1 AATATTT-TTTATATAT
26090557 AAT
1 AAT
26090560 TACTAGAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 10 0.36
16 1 0.04
17 13 0.46
18 4 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (16 bp):
AATATTTTTTATATAT
Found at i:26091058 original size:3 final size:3
Alignment explanation
Indices: 26091050--26091088 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
26091040 ACCACTCTTA
* * *
26091050 CAT CAT CAT CAT CAT CAT CGT CGT CAT CAT CAT TAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
26091089 TATTATTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.05, T:0.36
Consensus pattern (3 bp):
CAT
Found at i:26097737 original size:16 final size:16
Alignment explanation
Indices: 26097718--26097752 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
26097708 TTGACAAATG
26097718 TTTTTCATTTTG-ATT
1 TTTTTCATTTTGAATT
26097733 TTTTTCATTTTGAATT
1 TTTTTCATTTTGAATT
26097749 TTTT
1 TTTT
26097753 GTCTTCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (16 bp):
TTTTTCATTTTGAATT
Found at i:26098551 original size:209 final size:209
Alignment explanation
Indices: 26098182--26099123 Score: 1206
Period size: 209 Copynumber: 4.5 Consensus size: 209
26098172 GCAATAGAGT
* * * **
26098182 GAAGTGAACCAAATCCATCTTCCTAATAAGATGTAGAGAAGTGGATTAAAACAATGAGGCGGTCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTCA
* * * * *
26098247 TCTTCCTGATTAGATACAGAGAAGTAGACCAAATCGATGAAG-TAAAGCTCAATGTAAGTGAAAC
66 TCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAAGCTCAATGTGAGTGAAAC
* *
26098311 TTCAAACCTCCATCTTCCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTC
131 TTCAAACC-CCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTC
* **
26098376 CTGACGAGACGCAGA
195 CTGATGAGATACAGA
* * *
26098391 GAAGTAAATCAAATCCGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAATGAGGCGGAT-
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGG-TC
* * *
26098455 ATCTTCTTGATGAGATACTGAGATGTAAACCAAATCAATGAAGCGAAA-CTCAATGTGAGTGAAA
65 ATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAAGCTCAATGTGAGTGAAA
*
26098519 CTTCAAACCCCTATCTTCCTGATGAGATACAGAGGAGTGGGTCAAAGCAATAAAGTGGTCACCTT
130 CTTCAAACCCC-ATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTT
26098584 CCTGATGAGATACAGA
194 CCTGATGAGATACAGA
* * *
26098600 GAAGTGAACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTAGATTAAAACAATGAGGCAGTCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTCA
* * *
26098665 TCTTCTTGATGAGATACTGAGAAGTAGACCAAATCAATAAAGTG-AAGCTCAATGTGAGTGAAAC
66 TCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAAGCTCAATGTGAGTGAAAC
* *
26098729 TTCAAACCCCAATCATT-TTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCACCTT
131 TTCAAACCCC-ATC-TTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTT
*
26098793 CCTGATGAGATACAAA
194 CCTGATGAGATACAGA
* * * * * * * *
26098809 GAAATGAATCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGATTAGATCAATGAGGCTGTC
1 GAAGTGAACCAAA-TCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTC
** *
26098874 ATCTT-TCT-ACTGAGATACAGAGAAGTAGACCAAATCAATGAAGC-AAAGCTCAATACGAGCGA
65 ATCTTCT-TGA-TGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAAGCTCAATGTGAGTGA
* * * *
26098936 AACTTTAAACCCCATCTTTCTGATGAGATACATAGAAGTGGCTCAAAGCAATAAAGAT-GTCATC
128 AACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAG-TGGTCA-C
*
26099000 C-TCGTGATGAGATACAGA
191 CTTCCTGATGAGATACAGA
* * * *
26099018 GAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGGTTAAAATAATGAGGCGGCCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTCA
* * *
26099083 TCTT-TCTGATGAGATGCAAAGAAGTTGACCAAA-CTAATGAA
66 TCTTCT-TGATGAGATACAGAGAAGTAGACCAAATC-AATGAA
26099124 ACAGAGCTCA
Statistics
Matches: 643, Mismatches: 75, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
207 1 0.00
208 84 0.13
209 444 0.69
210 114 0.18
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (209 bp):
GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTCA
TCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAAGCTCAATGTGAGTGAAAC
TTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGTGGTCACCTTCC
TGATGAGATACAGA
Found at i:26102966 original size:101 final size:100
Alignment explanation
Indices: 26102825--26103100 Score: 313
Period size: 101 Copynumber: 2.7 Consensus size: 100
26102815 GAAGGCGAAC
* * *
26102825 CCTCATCTCTCT-AAGTTGTAGTAGAGCAGGATGAAGCTACAAAACCAAATCCTATACCCTTGAA
1 CCTCATCTCTCTAAAGTTGCAGTAGAGCAAGATGAAACTACAAAACCAAATCCTATACCC-TGAA
* * *
26102889 GTTGCAGTTGGTT-AGACTAAAGTCATGAAAGCAAAT
65 GTTGCAGTGGGTTGA-ACTAAAGTCATAAAAACAAAT
26102925 CCTCATCTCTCTAAAGTTGCAGTAGAGCAAGATGAAACTACAAAACCAAATCCTATACCCCTGAA
1 CCTCATCTCTCTAAAGTTGCAGTAGAGCAAGATGAAACTACAAAACCAAATCCTATA-CCCTGAA
* * *
26102990 GTTACAGGGGGTTGAATTAAAGTCATAAAAACAAAT
65 GTTGCAGTGGGTTGAACTAAAGTCATAAAAACAAAT
** * * * * * * * * * *
26103026 ATTTATCTCCCTAAAGTTACTGTGGAGTAAGATAAAACTATAACATCAAATCCTATATCCCTGAA
1 CCTCATCTCTCTAAAGTTGCAGTAGAGCAAGATGAAACTACAAAACCAAATCCTATA-CCCTGAA
26103091 GTTGCAGTGG
65 GTTGCAGTGG
26103101 ATTGGATTGA
Statistics
Matches: 149, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
100 12 0.08
101 133 0.89
102 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (100 bp):
CCTCATCTCTCTAAAGTTGCAGTAGAGCAAGATGAAACTACAAAACCAAATCCTATACCCTGAAG
TTGCAGTGGGTTGAACTAAAGTCATAAAAACAAAT
Found at i:26104898 original size:20 final size:20
Alignment explanation
Indices: 26104875--26104917 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
26104865 TTTTATTTAA
*
26104875 TTTATTATTTAT-TTATGTAT
1 TTTATTATTT-TGTTATCTAT
26104895 TTTATTATTTTGTTATCTAT
1 TTTATTATTTTGTTATCTAT
26104915 TTT
1 TTT
26104918 CATGCTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTATTATTTTGTTATCTAT
Found at i:26104953 original size:18 final size:18
Alignment explanation
Indices: 26104932--26104980 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
26104922 CTTACTCCTT
*
26104932 ATTATTTCCTTATTTATA
1 ATTATTTACTTATTTATA
* *
26104950 ATTATTTATTTATTTATT
1 ATTATTTACTTATTTATA
*
26104968 ATTTTTTA-TTATT
1 ATTATTTACTTATT
26104981 CATTTGTGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTATTTACTTATTTATA
Found at i:26106698 original size:29 final size:29
Alignment explanation
Indices: 26106638--26106758 Score: 91
Period size: 29 Copynumber: 4.2 Consensus size: 29
26106628 AAAATCGAGC
* * * *
26106638 TTTTGGAAAATTTGAGGCCGAAAAT-GTGA
1 TTTTTGAAAATTTGGGGGC-AAAATGGTAA
26106667 TTTTTGAAAATTTGGGGGCAAAATGGTAA
1 TTTTTGAAAATTTGGGGGCAAAATGGTAA
* ** * *
26106696 TTTTTGGATGTTCGGGGGTAAAATGGTAA
1 TTTTTGAAAATTTGGGGGCAAAATGGTAA
* ** * * *
26106725 TTTTTGGATGTTTAGGGTCAAAATGGGAA
1 TTTTTGAAAATTTGGGGGCAAAATGGTAA
26106754 TTTTT
1 TTTTT
26106759 AAATGTTCAG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 5 0.06
29 72 0.94
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (29 bp):
TTTTTGAAAATTTGGGGGCAAAATGGTAA
Found at i:26106784 original size:29 final size:29
Alignment explanation
Indices: 26106686--26106939 Score: 137
Period size: 29 Copynumber: 8.6 Consensus size: 29
26106676 ATTTGGGGGC
** **
26106686 AAAATGGTAATTTTTGGATGTTCGGGGGT-
1 AAAAT-GTAATTTTTAAATGTTTAGGGGTA
** *
26106715 AAAATGGTAATTTTTGGATGTTTA-GGGTC
1 AAAAT-GTAATTTTTAAATGTTTAGGGGTA
* *
26106744 AAAATGGGAATTTTTAAATGTTCAGGGGTA
1 AAAAT-GTAATTTTTAAATGTTTAGGGGTA
* * *
26106774 AAAATGTAATTTTGGAAAAGTTT-GGAGTA
1 AAAATGTAATTTT-TAAATGTTTAGGGGTA
* * * *
26106803 AAAATGTGATTTTGGAAA-GTTTAAGGGTC
1 AAAATGTAATTTT-TAAATGTTTAGGGGTA
* * *
26106832 AAAATGTAA-TTTTAGAGAAGTTTAAGGGTT
1 AAAATGTAATTTTTA-A-ATGTTTAGGGGTA
*
26106862 AAAATGTAATTTTTGGAAA-GTTTGAGGGTTA
1 AAAATGTAATTTTT--AAATGTTT-AGGGGTA
* * *
26106893 AAATATG--ATTTTTAAAAAGTTTAGGAGTT
1 AAA-ATGTAATTTTT-AAATGTTTAGGGGTA
26106922 AAAATGTAATTTTTAAAT
1 AAAATGTAATTTTTAAAT
26106940 AAAATAAGGG
Statistics
Matches: 183, Mismatches: 27, Indels: 30
0.76 0.11 0.12
Matches are distributed among these distances:
27 1 0.01
28 15 0.08
29 96 0.52
30 54 0.30
31 12 0.07
32 4 0.02
33 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (29 bp):
AAAATGTAATTTTTAAATGTTTAGGGGTA
Found at i:26106815 original size:58 final size:58
Alignment explanation
Indices: 26106658--26106939 Score: 186
Period size: 58 Copynumber: 4.8 Consensus size: 58
26106648 TTTGAGGCCG
* * * * ** *
26106658 AAAATGTGATTTTTGAAAA-TTTGGGGGCAAAATGGTAATTTTTGGATGTTCGGGGGT-
1 AAAATGTAATTTTGGAAAAGTTTAGGGTCAAAAT-GTAATTTTTAAATGTTCAGGGGTA
* *
26106715 AAAATGGTAATTTTTGG--ATGTTTAGGGTCAAAATGGGAATTTTTAAATGTTCAGGGGTA
1 AAAAT-GTAA-TTTTGGAAAAGTTTAGGGTCAAAAT-GTAATTTTTAAATGTTCAGGGGTA
* * * * * *
26106774 AAAATGTAATTTTGGAAAAGTTT-GGAGTAAAAATGTGATTTTGGAAA-GTTTAAGGGTC
1 AAAATGTAATTTTGGAAAAGTTTAGG-GTCAAAATGTAATTTT-TAAATGTTCAGGGGTA
* * * * *
26106832 AAAATGTAATTTTAGAGAAGTTTAAGGGTTAAAATGTAATTTTTGGAAA-GTTTGAGGGTTA
1 AAAATGTAATTTTGGAAAAGTTT-AGGGTCAAAATGTAATTTTT--AAATG-TTCAGGGGTA
** *
26106893 AAATATG--ATTTTTAAAAAGTTTAGGAGTTAAAATGTAATTTTTAAAT
1 AAA-ATGTAATTTTGGAAAAGTTTAGG-GTCAAAATGTAATTTTTAAAT
26106940 AAAATAAGGG
Statistics
Matches: 180, Mismatches: 29, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
57 12 0.07
58 79 0.44
59 42 0.23
60 35 0.19
61 9 0.05
62 3 0.02
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.38
Consensus pattern (58 bp):
AAAATGTAATTTTGGAAAAGTTTAGGGTCAAAATGTAATTTTTAAATGTTCAGGGGTA
Found at i:26106935 original size:30 final size:29
Alignment explanation
Indices: 26106734--26106938 Score: 157
Period size: 30 Copynumber: 6.9 Consensus size: 29
26106724 ATTTTTGGAT
* * *
26106734 GTTTAGGGTCAAAATGGGAATTTTT-AAAT
1 GTTTAGGGTTAAAAT-GTAATTTTTAAAAA
* * **
26106763 GTTCAGGGGTAAAAATGTAATTTTGGAAAA
1 GTTTA-GGGTTAAAATGTAATTTTTAAAAA
* * **
26106793 GTTT-GGAGTAAAAATGTGA-TTTTGGAAA
1 GTTTAGG-GTTAAAATGTAATTTTTAAAAA
* *
26106821 GTTTAAGGGTCAAAATGTAA-TTTTAGAGAA
1 GTTT-AGGGTTAAAATGTAATTTTTA-AAAA
**
26106851 GTTTAAGGGTTAAAATGTAATTTTTGGAAA
1 GTTT-AGGGTTAAAATGTAATTTTTAAAAA
* *
26106881 GTTTGAGGGTTAAAATATGATTTTTAAAAA
1 GTTT-AGGGTTAAAATGTAATTTTTAAAAA
26106911 GTTTAGGAGTTAAAATGTAATTTTTAAA
1 GTTTAGG-GTTAAAATGTAATTTTTAAA
26106939 TAAAATAAGG
Statistics
Matches: 143, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
28 13 0.09
29 39 0.27
30 87 0.61
31 4 0.03
ACGTcount: A:0.38, C:0.01, G:0.23, T:0.37
Consensus pattern (29 bp):
GTTTAGGGTTAAAATGTAATTTTTAAAAA
Found at i:26107436 original size:23 final size:23
Alignment explanation
Indices: 26107410--26107465 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
26107400 CCTGTCTACA
26107410 ACGCGCCACCGTCAACCATCGTC
1 ACGCGCCACCGTCAACCATCGTC
***
26107433 ACGCGTTGCCGTCAACCATCGTC
1 ACGCGCCACCGTCAACCATCGTC
26107456 ACGCGCCACC
1 ACGCGCCACC
26107466 ATGTACGGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.20, C:0.46, G:0.20, T:0.14
Consensus pattern (23 bp):
ACGCGCCACCGTCAACCATCGTC
Found at i:26107887 original size:21 final size:20
Alignment explanation
Indices: 26107861--26107899 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26107851 TCTTTTCTTT
26107861 TTATTATTTAATTTATTATAC
1 TTATTATTT-ATTTATTATAC
26107882 TTATTATTTATTTATTAT
1 TTATTATTTATTTATTAT
26107900 GCATTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTATTTATTTATTATAC
Found at i:26108500 original size:6 final size:6
Alignment explanation
Indices: 26108489--26108588 Score: 68
Period size: 6 Copynumber: 17.5 Consensus size: 6
26108479 CCTTTTTTTA
* * * *
26108489 AAATTT AAATTT AAA-AT AAATTT AAATCT AGAA--T GAATTT AAATTC
1 AAATTT AAATTT AAATTT AAATTT AAATTT A-AATTT AAATTT AAATTT
* * * * *
26108535 AAA-AT AAATTT AAATTT AAA-CT AAATTT AAACTT AAA-AT AAATTA
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
26108580 AAATTT AAA
1 AAATTT AAA
26108589 ATTGGGTCCA
Statistics
Matches: 71, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
4 2 0.03
5 16 0.23
6 51 0.72
7 2 0.03
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (6 bp):
AAATTT
Found at i:26108511 original size:17 final size:17
Alignment explanation
Indices: 26108489--26108590 Score: 141
Period size: 17 Copynumber: 6.0 Consensus size: 17
26108479 CCTTTTTTTA
26108489 AAATTTAAATTTAAAAT
1 AAATTTAAATTTAAAAT
* *
26108506 AAATTTAAATCTAGAAT
1 AAATTTAAATTTAAAAT
* *
26108523 GAATTTAAATTCAAAAT
1 AAATTTAAATTTAAAAT
*
26108540 AAATTTAAATTTAAACT
1 AAATTTAAATTTAAAAT
*
26108557 AAATTTAAACTTAAAAT
1 AAATTTAAATTTAAAAT
*
26108574 AAATTAAAATTTAAAAT
1 AAATTTAAATTTAAAAT
26108591 TGGGTCCAAT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 72 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (17 bp):
AAATTTAAATTTAAAAT
Found at i:26109581 original size:109 final size:110
Alignment explanation
Indices: 26109399--26109655 Score: 266
Period size: 109 Copynumber: 2.3 Consensus size: 110
26109389 TGGTGCTACA
* * * * * *
26109399 AACGGAGCATCCACGATTTCCTCTAATAACTTTTATCTGCAAGGGGTTATGGATCCTCAATCCAT
1 AACGGAGCATCCACGATTTCCTCCAATAACTTTTATCTACAAGAGATTATGGATCCTAAATCAAT
* * * * *
26109464 TCGCTGTGTATTCATAGATTAGTAGATTTCATCTGCTACTACATG
66 TCGCTGTGTATTCACAGATTAGTAGATTCCAACTGCGACTACACG
* * * *
26109509 AACGGAGCATCCACGA-TTCCTCCGATAGCTTTTATCTACGAGAGATTGTGGATCCTAAATCAA-
1 AACGGAGCATCCACGATTTCCTCCAATAACTTTTATCTACAAGAGATTATGGATCCTAAATCAAT
* * *
26109572 TCTGTTGTGTATTCACAGATTGGTAGATTCCAACTGCGACTATACG
66 TC-GCTGTGTATTCACAGATTAGTAGATTCCAACTGCGACTACACG
* * * * * * *
26109618 AACGAAGCATCTATGATTTTCTCTAACAGCTTTTATCT
1 AACGGAGCATCCACGATTTCCTCCAATAACTTTTATCT
26109656 GCATGGGGTT
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
108 2 0.02
109 85 0.71
110 33 0.28
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (110 bp):
AACGGAGCATCCACGATTTCCTCCAATAACTTTTATCTACAAGAGATTATGGATCCTAAATCAAT
TCGCTGTGTATTCACAGATTAGTAGATTCCAACTGCGACTACACG
Found at i:26113805 original size:16 final size:16
Alignment explanation
Indices: 26113767--26113806 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26113757 TAAACTCTTG
* *
26113767 AATTTTATATATTTTT
1 AATTTTTTAAATTTTT
26113783 AATTTTTTAAATTTTT
1 AATTTTTTAAATTTTT
26113799 AATTTTTT
1 AATTTTTT
26113807 CTTGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
AATTTTTTAAATTTTT
Found at i:26114010 original size:16 final size:16
Alignment explanation
Indices: 26113974--26114015 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26113964 ATAAAAATAT
*
26113974 ATTTAAATAAATTCAAG
1 ATTTAAA-AAAATCAAG
*
26113991 ATTTAAAAAAATCCAG
1 ATTTAAAAAAATCAAG
26114007 ATTTAAAAA
1 ATTTAAAAA
26114016 TGGATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (16 bp):
ATTTAAAAAAATCAAG
Found at i:26114061 original size:18 final size:18
Alignment explanation
Indices: 26114040--26114079 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
26114030 TTAAGTAATA
26114040 AAAAT-TGGAATTTAATTT
1 AAAATATGGAATTT-ATTT
26114058 AAAATATGGAATTTATTT
1 AAAATATGGAATTTATTT
26114076 AAAA
1 AAAA
26114080 AAAATTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
AAAATATGGAATTTATTT
Found at i:26114080 original size:19 final size:19
Alignment explanation
Indices: 26114038--26114080 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
26114028 ATTTAAGTAA
26114038 TAAAAATTGGAATTTAATT
1 TAAAAATTGGAATTTAATT
26114057 T-AAAATATGGAATTT-ATT
1 TAAAAAT-TGGAATTTAATT
26114075 TAAAAA
1 TAAAAA
26114081 AAATTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (19 bp):
TAAAAATTGGAATTTAATT
Found at i:26114317 original size:2 final size:2
Alignment explanation
Indices: 26114310--26114364 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
26114300 ATAGTTTATT
26114310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26114352 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
26114365 TCATGTTATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26117611 original size:13 final size:13
Alignment explanation
Indices: 26117595--26117619 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26117585 ATAAAAATAA
26117595 AAATTAAATCTTT
1 AAATTAAATCTTT
26117608 AAATTAAATCTT
1 AAATTAAATCTT
26117620 CCAATTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
AAATTAAATCTTT
Found at i:26131426 original size:49 final size:49
Alignment explanation
Indices: 26131308--26131736 Score: 218
Period size: 49 Copynumber: 8.7 Consensus size: 49
26131298 ACCATGAACA
* * * *
26131308 CATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCTAGTTCC--ACGAAG
1 CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCTGA-GAAG
* * ** * * *
26131356 ATAATGGAGGGAAAGGCTTAAGTCACAAAGACAAACCTTGTACCTGAGAAG
1 --CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCTGAGAAG
* * * * * *
26131407 CATGAAGGGAAAGATTTAAGCCACGACGATGAATCC-AGTACCATGAAGATAA
1 CATGAAGGGAAAGATTTAAGTCGCAACGACGAA-CCTTGTACC-TG-AGA-AG
* * * * **
26131459 CA--AAGGGAAAGGTTTAAATCGCAACGACGAATCTTCTACCCCAGAAG
1 CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCTGAGAAG
* * *
26131506 CATGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCTCGAAGATA-
1 CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCT-G-AGA-AG
* * * * *
26131557 CA--AAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTGTACCTCAAAAG
1 CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCTGAGAAG
* ** * * *
26131604 CATGAAGGGAAAGATTTAAGAC-CACAAAAGCGAATCTAGCACC--ACGAAG
1 CATGAAGGGAAAGATTTAAGTCGCA-ACGA-CGAACCTTGTACCTGA-GAAG
* * * * *
26131653 -ATACAAAGGGAAAAGGTTTAAGTCGCAATGGCGAACCTTGTACCTCA-AAG
1 CAT--GAAGGG-AAAGATTTAAGTCGCAACGACGAACCTTGTACCTGAGAAG
* *
26131703 ACATGAAGGGAAAAATTTAAGTCGCAACGGCGAA
1 -CATGAAGGGAAAGATTTAAGTCGCAACGACGAA
26131737 TTTAGTACCA
Statistics
Matches: 282, Mismatches: 71, Indels: 53
0.69 0.17 0.13
Matches are distributed among these distances:
46 1 0.00
47 7 0.02
48 8 0.03
49 137 0.49
50 95 0.34
51 24 0.09
52 10 0.04
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (49 bp):
CATGAAGGGAAAGATTTAAGTCGCAACGACGAACCTTGTACCTGAGAAG
Found at i:26131505 original size:99 final size:98
Alignment explanation
Indices: 26131308--26131746 Score: 515
Period size: 99 Copynumber: 4.4 Consensus size: 98
26131298 ACCATGAACA
* * * * *
26131308 CATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCTAGTTCCACGAAGATA-ATGGAGGGAAAGG
1 CATGAAGGGAAAGATTTAAGCCACAACGACGAATCTAGTACCACGAAGATACA--AAGGGAAAGG
* * * * *
26131372 CTTAAGTCACAAAGACAAACCTTGTACCTGAGAAG
64 TTTAAGTCGCAATGACGAACCTTGTACCTCAGAAG
* * * *
26131407 CATGAAGGGAAAGATTTAAGCCACGACGATGAATCCAGTACCATGAAGATAACAAAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGACGAATCTAGTACCACGAAGAT-ACAAAGGGAAAGGT
* * * * *
26131472 TTAAATCGCAACGACGAATCTTCTACCCCAGAAG
65 TTAAGTCGCAATGACGAACCTTGTACCTCAGAAG
* *
26131506 CATGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCTCGAAGATACAAAGGGAAAGGTT
1 CATGAAGGGAAAGATTTAAGCCACAACGACGAATCTAGTACCACGAAGATACAAAGGGAAAGGTT
* *
26131571 TAAGTCGCAATGGCGAACCTTGTACCTCAAAAG
66 TAAGTCGCAATGACGAACCTTGTACCTCAGAAG
* *
26131604 CATGAAGGGAAAGATTTAAGACCACAA-AAGCGAATCTAGCACCACGAAGATACAAAGGGAAAAG
1 CATGAAGGGAAAGATTTAAG-CCACAACGA-CGAATCTAGTACCACGAAGATACAAAGGG-AAAG
*
26131668 GTTTAAGTCGCAATGGCGAACCTTGTACCTCA-AAG
63 GTTTAAGTCGCAATGACGAACCTTGTACCTCAGAAG
* * * * *
26131703 ACATGAAGGGAAAAATTTAAGTCGCAACGGCGAATTTAGTACCA
1 -CATGAAGGGAAAGATTTAAGCCACAACGACGAATCTAGTACCA
26131747 TGCAGATTGA
Statistics
Matches: 291, Mismatches: 42, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
98 62 0.21
99 172 0.59
100 56 0.19
101 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.18
Consensus pattern (98 bp):
CATGAAGGGAAAGATTTAAGCCACAACGACGAATCTAGTACCACGAAGATACAAAGGGAAAGGTT
TAAGTCGCAATGACGAACCTTGTACCTCAGAAG
Found at i:26141910 original size:22 final size:24
Alignment explanation
Indices: 26141859--26141913 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
26141849 AAAAAAAATT
26141859 AAATTAAATTATTAATTTTTTAAA
1 AAATTAAATTATTAATTTTTTAAA
*
26141883 AAATTAAATTATT-CTTTTTT-AA
1 AAATTAAATTATTAATTTTTTAAA
*
26141905 ATATTAAAT
1 AAATTAAAT
26141914 AAAATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 10 0.34
23 6 0.21
24 13 0.45
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
AAATTAAATTATTAATTTTTTAAA
Found at i:26141979 original size:19 final size:19
Alignment explanation
Indices: 26141955--26142006 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
26141945 TGATCAACTA
* *
26141955 TATTTTTTTTAACTTTTTT
1 TATTTTTTTTAAATATTTT
26141974 TATTTTTTTTAAATATTTT
1 TATTTTTTTTAAATATTTT
**
26141993 TATAATTTTTAAAT
1 TATTTTTTTTAAAT
26142007 CTGAAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTTTTTTAAATATTTT
Found at i:26143441 original size:58 final size:56
Alignment explanation
Indices: 26143379--26143495 Score: 150
Period size: 58 Copynumber: 2.0 Consensus size: 56
26143369 TATTATTTTT
26143379 TAATATTATATAT-TATA-ATTTGTATT-AATTCATATTTTAATAATAATTATATTAAGAA
1 TAATATTATAT-TGTATATATTT-TATTAAATT-ATA-TTTAATAATAATTATATTAA-AA
*
26143437 TAATATTATATTGTATATTATTTTATTAAATTATATTTAATAATATTTATATTAAAA
1 TAATATTATATTGTATA-TATTTTATTAAATTATATTTAATAATAATTATATTAAAA
26143494 TA
1 TA
26143496 TGATTAAATT
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
57 5 0.09
58 34 0.63
59 7 0.13
60 8 0.15
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (56 bp):
TAATATTATATTGTATATATTTTATTAAATTATATTTAATAATAATTATATTAAAA
Found at i:26143472 original size:25 final size:26
Alignment explanation
Indices: 26143441--26143492 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
26143431 TAAGAATAAT
*
26143441 ATTATATTGT-ATATTATTT-TATTAA
1 ATTATATT-TAATAATATTTATATTAA
26143466 ATTATATTTAATAATATTTATATTAA
1 ATTATATTTAATAATATTTATATTAA
26143492 A
1 A
26143493 ATATGATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 16 0.67
26 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTATATTTAATAATATTTATATTAA
Found at i:26143502 original size:26 final size:25
Alignment explanation
Indices: 26143455--26143511 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
26143445 TATTGTATAT
*
26143455 TATTT-TATTAAATTATATTTAATAA
1 TATTTATATTAAAATATATTTAA-AA
*
26143480 TATTTATATTAAAATATGA-TTAAAT
1 TATTTATATTAAAATAT-ATTTAAAA
26143505 TATTTAT
1 TATTTAT
26143512 TATTTATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 13 0.46
26 14 0.50
27 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TATTTATATTAAAATATATTTAAAA
Found at i:26147922 original size:14 final size:14
Alignment explanation
Indices: 26147900--26147965 Score: 64
Period size: 14 Copynumber: 4.9 Consensus size: 14
26147890 CCGAAACTTT
*
26147900 AACCCTAAACCTCA
1 AACCTTAAACCTCA
*
26147914 AACCTTAAATC-CA
1 AACCTTAAACCTCA
* * *
26147927 AA-TTTAAACTTTA
1 AACCTTAAACCTCA
*
26147940 AACCCTAAACCTCA
1 AACCTTAAACCTCA
26147954 AACCTTAAACCT
1 AACCTTAAACCT
26147966 TAAATCCAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
12 5 0.13
13 7 0.18
14 27 0.69
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCTTAAACCTCA
Found at i:26147944 original size:40 final size:42
Alignment explanation
Indices: 26147893--26147998 Score: 146
Period size: 47 Copynumber: 2.5 Consensus size: 42
26147883 TCCAAACCCG
26147893 AAACTTT-AACCCTAAACCT-C-AAACCTTAAATCCAAATTT
1 AAACTTTAAACCCTAAACCTACTAAACCTTAAATCCAAATTT
26147932 AAACTTTAAACCCTAAACCTCAAACCTTAAACCTTAAATCCAAATTT
1 AAACTTTAAACCCTAAACCT---A-C-TAAACCTTAAATCCAAATTT
26147979 AAACTTTAAACCCTAAACCT
1 AAACTTTAAACCCTAAACCT
26147999 TGATCATCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
39 7 0.12
40 12 0.20
45 1 0.02
47 39 0.66
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.27
Consensus pattern (42 bp):
AAACTTTAAACCCTAAACCTACTAAACCTTAAATCCAAATTT
Found at i:26147968 original size:47 final size:47
Alignment explanation
Indices: 26147906--26147998 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
26147896 CTTTAACCCT
26147906 AAACCTCAAACCTTAAATCCAAATTTAAACTTTAAACCCTAAACCTC
1 AAACCTCAAACCTTAAATCCAAATTTAAACTTTAAACCCTAAACCTC
*
26147953 AAACCTTAAACCTTAAATCCAAATTTAAACTTTAAACCCTAAACCT
1 AAACCTCAAACCTTAAATCCAAATTTAAACTTTAAACCCTAAACCT
26147999 TGATCATCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (47 bp):
AAACCTCAAACCTTAAATCCAAATTTAAACTTTAAACCCTAAACCTC
Found at i:26148949 original size:22 final size:22
Alignment explanation
Indices: 26148902--26148950 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
26148892 CGAATTGAAT
* *
26148902 TAAATTTTTTTTAATTAATAAT
1 TAAATTTTTTATAATTAATAAA
*
26148924 TAAATTTTTTATGATGTAA-AAA
1 TAAATTTTTTATAAT-TAATAAA
26148946 TAAAT
1 TAAAT
26148951 AATTTATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TAAATTTTTTATAATTAATAAA
Found at i:26148994 original size:25 final size:27
Alignment explanation
Indices: 26148960--26149009 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
26148950 TAATTTATTT
26148960 ATATAGTAAAAAATAATTTT-AAAATA
1 ATATAGTAAAAAATAATTTTCAAAATA
*
26148986 ATATA-TAAAAAATATTTTTCAAAA
1 ATATAGTAAAAAATAATTTTCAAAA
26149010 AAAAATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (27 bp):
ATATAGTAAAAAATAATTTTCAAAATA
Found at i:26152399 original size:3 final size:3
Alignment explanation
Indices: 26152391--26152423 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26152381 TCTTTGTCAC
26152391 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
26152424 ATTCAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:26172327 original size:17 final size:17
Alignment explanation
Indices: 26172292--26172377 Score: 93
Period size: 17 Copynumber: 5.1 Consensus size: 17
26172282 CTTAAATCTA
26172292 ATTTTAAATTTTAAA-TT
1 ATTTTAAA-TTTAAATTT
* *
26172309 ATGTTAAGTTTAAATTT
1 ATTTTAAATTTAAATTT
* *
26172326 ATTATAAATTTAAATAT
1 ATTTTAAATTTAAATTT
* *
26172343 ATTTTGAGTTTAAATTT
1 ATTTTAAATTTAAATTT
*
26172360 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
26172377 A
1 A
26172378 ATTAAAATAT
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
16 6 0.11
17 49 0.89
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:26172335 original size:34 final size:35
Alignment explanation
Indices: 26172296--26172370 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
26172286 AATCTAATTT
26172296 TAAATTTTAAAT-TATGTTAAGTTTAAATTTATTA
1 TAAATTTTAAATATATGTTAAGTTTAAATTTATTA
* * *
26172330 TAAA-TTTAAATATATTTTGAGTTTAAATTTATTT
1 TAAATTTTAAATATATGTTAAGTTTAAATTTATTA
26172364 TAAATTT
1 TAAATTT
26172371 GAATTTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 7 0.19
34 27 0.75
35 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (35 bp):
TAAATTTTAAATATATGTTAAGTTTAAATTTATTA
Found at i:26174171 original size:178 final size:179
Alignment explanation
Indices: 26173831--26174189 Score: 564
Period size: 178 Copynumber: 2.0 Consensus size: 179
26173821 CAATTGGCCT
* * * **
26173831 AACAATTTTCATTGCTTTTAATTTAGTCCCCTGACTACCAGGAAGCCCAGGAAGTTGCCATGTGT
1 AACAATTTTCATTGCTTTTAATTTAGTCCCCTGACTACCAAGAAGCCCAGGAAGCTACCACATGT
26173896 CAATCTTTGGGTTATTTTGCAAATGGTCCTTTCTATTTTTGATTTGTTTTATTTTCATCCTTAAA
66 CAATCTTTGGGTTATTTTGCAAATGGTCCTTTCTATTTTTGATTTGTTTTATTTTCATCCTTAAA
26173961 TCAAGTTTTATTTTATTGTAAATTTGCCCAGTAAATTTAGATGATTTCTC
131 TCAAGTTTTATTTTATTGTAAATTTGCCCAGTAAATTTAGATGATTT-TC
* *
26174011 AACAATTTTTATTGCTTTTCAATTTAGTCCCCTGACTACCAAGAAGCCTAGGAAGCTACCACATG
1 AACAATTTTCATTGCTTTT-AATTTAGTCCCCTGACTACCAAGAAGCCCAGGAAGCTACCACATG
**
26174076 TCAATCTTTGGGTTATTTTGCAAATGGT-C-TT-TAGTTTTT-ATTTGTTTTATTTTTGTCCTTA
65 TCAATCTTTGGGTTATTTTGCAAATGGTCCTTTCTA-TTTTTGATTTGTTTTATTTTCATCCTTA
* *
26174137 AATCAAGTTTTATTTTATTGTAAATTTTCCCAGTAATTTTAGATGATTTTC
129 AATCAAGTTTTATTTTATTGTAAATTTGCCCAGTAAATTTAGATGATTTTC
26174188 AA
1 AA
26174190 ATTGGTCCTT
Statistics
Matches: 166, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
177 4 0.02
178 69 0.42
179 7 0.04
180 19 0.11
181 67 0.40
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (179 bp):
AACAATTTTCATTGCTTTTAATTTAGTCCCCTGACTACCAAGAAGCCCAGGAAGCTACCACATGT
CAATCTTTGGGTTATTTTGCAAATGGTCCTTTCTATTTTTGATTTGTTTTATTTTCATCCTTAAA
TCAAGTTTTATTTTATTGTAAATTTGCCCAGTAAATTTAGATGATTTTC
Found at i:26174312 original size:30 final size:30
Alignment explanation
Indices: 26174271--26174596 Score: 269
Period size: 30 Copynumber: 11.0 Consensus size: 30
26174261 GGTCTCTAAA
* *
26174271 TTTCTCAAAAATTATATTTTGACCCTCGAAC
1 TTTC-CAAAAATTACATTTTGACCCTCAAAC
* * * *
26174302 TTCCCAAAAATTATATTTTAACCCTCGAAC
1 TTTCCAAAAATTACATTTTGACCCTCAAAC
*
26174332 TTTCCAAAAATTATATTTTGATCCC-CAAAC
1 TTTCCAAAAATTACATTTTGA-CCCTCAAAC
*
26174362 -TTCCTAAAAATTACATTTTGACCCTTAAAC
1 TTTCC-AAAAATTACATTTTGACCCTCAAAC
* *
26174392 TTTCCAAAAATTACATTTTAACCCTTAAAC
1 TTTCCAAAAATTACATTTTGACCCTCAAAC
*
26174422 TTTTCAAAAATTACATTTTTG-CCCTCAAAC
1 TTTCCAAAAATTACA-TTTTGACCCTCAAAC
* *
26174452 -TTCC-AAAATTCCATTTCTG-CCCTCGAAC
1 TTTCCAAAAATTACATTT-TGACCCTCAAAC
* * *
26174480 -TTCCAAAAATTCCATTTTTACCCCCAAAC
1 TTTCCAAAAATTACATTTTGACCCTCAAAC
* * * *
26174509 TTT-CAAAAATCACATTTTTACCC-CGAAT
1 TTTCCAAAAATTACATTTTGACCCTCAAAC
* *** * *
26174537 TTTCCCAAAATGGTATTTTAACCCCTAAAAC
1 TTTCCAAAAATTACATTTTGA-CCCTCAAAC
* *
26174568 TTT-CTAAAATTACATTTTAACCC-CAAAC
1 TTTCCAAAAATTACATTTTGACCCTCAAAC
26174596 T
1 T
26174597 CTTTGAAACT
Statistics
Matches: 249, Mismatches: 34, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.01
28 34 0.14
29 62 0.25
30 131 0.53
31 19 0.08
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (30 bp):
TTTCCAAAAATTACATTTTGACCCTCAAAC
Found at i:26174430 original size:90 final size:89
Alignment explanation
Indices: 26174276--26174596 Score: 300
Period size: 90 Copynumber: 3.6 Consensus size: 89
26174266 CTAAATTTCT
* * * * *
26174276 CAAAAATTATATTTTGACCCTCGAACTTCCCAAAAATTATATTTTAACCCTCGAACTTTCCAAAA
1 CAAAAATTACATTTTGACCCTCGAACTTTCCAAAAATTACATTTTAACCCTCAAACTTTTCAAAA
*
26174341 ATTATA-TTTTGATCCC-CAAACTTC
66 ATTACATTTTTG--CCCTCAAACTTC
** *
26174365 CTAAAAATTACATTTTGACCCTTAAACTTTCCAAAAATTACATTTTAACCCTTAAACTTTTCAAA
1 C-AAAAATTACATTTTGACCCTCGAACTTTCCAAAAATTACATTTTAACCCTCAAACTTTTCAAA
26174430 AATTACATTTTTGCCCTCAAACTTC
65 AATTACATTTTTGCCCTCAAACTTC
* * * *
26174455 C-AAAATTCCATTTCTG-CCCTCGAAC-TTCCAAAAATTCCATTTTTACCCCCAAAC-TTTCAAA
1 CAAAAATTACATTT-TGACCCTCGAACTTTCCAAAAATTACATTTTAACCCTCAAACTTTTCAAA
* * **
26174516 AATCACATTTTTACCC-CGAATTTTC
65 AATTACATTTTTGCCCTC-AAACTTC
* *** * ** *
26174541 CCAAAATGGTATTTTAACCCCTAAAACTTT-CTAAAATTACATTTTAACCC-CAAACT
1 CAAAAATTACATTTTGA-CCCTCGAACTTTCCAAAAATTACATTTTAACCCTCAAACT
26174597 CTTTGAAACT
Statistics
Matches: 193, Mismatches: 29, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
85 1 0.01
86 28 0.15
87 39 0.20
88 42 0.22
89 8 0.04
90 70 0.36
91 5 0.03
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (89 bp):
CAAAAATTACATTTTGACCCTCGAACTTTCCAAAAATTACATTTTAACCCTCAAACTTTTCAAAA
ATTACATTTTTGCCCTCAAACTTC
Found at i:26174961 original size:97 final size:97
Alignment explanation
Indices: 26174850--26175043 Score: 271
Period size: 97 Copynumber: 2.0 Consensus size: 97
26174840 AAAATATTTA
* * * * *
26174850 AAATCGAGGTAATATTCCTTTATTTCGGGTTCTGAAAATTTGTGCCTTAACTTACTAGGCGTAAT
1 AAATCGAGGCAATATTCCTTTATCTCGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGCGCAAC
*
26174915 TTTTCTTCAAATCGGGATAATCGAATACCCTT
66 TTTTCTTCAAATCGAGATAATCGAATACCCTT
* * * * * * *
26174947 AAATCGATGCAATATTTCTTTATCTCTAGTTTTGAAAATTTGTTCCTTAACTTAGTAGGCGCGAC
1 AAATCGAGGCAATATTCCTTTATCTCGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGCGCAAC
26175012 TTTTCTTCAAATCGAGATAATCGAATACCCTT
66 TTTTCTTCAAATCGAGATAATCGAATACCCTT
26175044 TTTTCAAGGT
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
97 84 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATCTCGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGCGCAAC
TTTTCTTCAAATCGAGATAATCGAATACCCTT
Found at i:26178711 original size:13 final size:13
Alignment explanation
Indices: 26178693--26178722 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26178683 CAGATTCGAT
26178693 AAAAAAAAGA-AG
1 AAAAAAAAGAGAG
26178705 AAAAAAAAGAGAG
1 AAAAAAAAGAGAG
26178718 AAAAA
1 AAAAA
26178723 GAGGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAGAG
Found at i:26179771 original size:50 final size:50
Alignment explanation
Indices: 26179693--26179883 Score: 181
Period size: 50 Copynumber: 3.9 Consensus size: 50
26179683 GAATCCAATT
* * * *
26179693 CCTAAGAAGATGTGAT-AGAAAAAGTTGAGGCCGCAATGGTGAACCCGGTA
1 CCTAAGAAGATGTGATGGGAAAGA-TTGAGGCCGCAACGGCGAACCCGGTA
* *
26179743 CCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACGACGAATCCGGTA
1 CCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACGGCGAACCCGGTA
* * * * *
26179793 CC-ATGAA-ATGTGAAGGGAAAGGTTGAGGCTGCAACGGCAAACCCGGTA
1 CCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACGGCGAACCCGGTA
* * ** * * * *
26179841 CCTTAGAAAATAAGATGGAAAAGATTGAAGCTGCAATGGCGAA
1 CCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACGGCGAA
26179884 TCTTATACCA
Statistics
Matches: 115, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
48 37 0.32
49 7 0.06
50 66 0.57
51 5 0.04
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (50 bp):
CCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACGGCGAACCCGGTA
Found at i:26179893 original size:98 final size:98
Alignment explanation
Indices: 26179716--26179894 Score: 214
Period size: 98 Copynumber: 1.8 Consensus size: 98
26179706 GATAGAAAAA
* ** * ** * *
26179716 GTTGAGGCCGCAATGGTGAACCCGGTACCTAAGAAGATGTGATGGGAAAGATTGAGGCCGCAACG
1 GTTGAGGCCGCAACGGCAAACCCGGTACCTAAGAAAATAAGATGGAAAAGATTGAAGCCGCAACG
*
26179781 ACGAATCCGGTACCATGAAATGTGAAGGGAAAG
66 ACGAATCCGATACCATGAAATGTGAAGGGAAAG
* * * *
26179814 GTTGAGGCTGCAACGGCAAACCCGGTACCTTAGAAAATAAGATGGAAAAGATTGAAGCTGCAATG
1 GTTGAGGCCGCAACGGCAAACCCGGTACCTAAGAAAATAAGATGGAAAAGATTGAAGCCGCAACG
* **
26179879 GCGAATCTTATACCAT
66 ACGAATCCGATACCAT
26179895 AAAGTCGAAG
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
98 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (98 bp):
GTTGAGGCCGCAACGGCAAACCCGGTACCTAAGAAAATAAGATGGAAAAGATTGAAGCCGCAACG
ACGAATCCGATACCATGAAATGTGAAGGGAAAG
Found at i:26180140 original size:41 final size:41
Alignment explanation
Indices: 26180006--26180128 Score: 219
Period size: 41 Copynumber: 3.0 Consensus size: 41
26179996 ATCATCATTT
26180006 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
*
26180047 AGTCTTTTACCCTTAATTAAGAAGGGCAGATTGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
* *
26180088 AGTTTTTTACCCTTAATCAAGAAGGGCAGAATGAAGATTCC
1 AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
26180129 GATCTCTTAC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (41 bp):
AGTCTTTTACCCTTAATCAAGAAGGGCAGATTGAAGATTCC
Found at i:26180292 original size:37 final size:39
Alignment explanation
Indices: 26180241--26180314 Score: 116
Period size: 37 Copynumber: 1.9 Consensus size: 39
26180231 AGATCACCAT
* *
26180241 CAGCCACCCGATCTCTTACCCCGA-CAT-GGGCAGATCA
1 CAGCCACCCAATCTCTTACCCCAATCATGGGGCAGATCA
26180278 CAGCCACCCAATCTCTTACCCCAATCATGGGGCAGAT
1 CAGCCACCCAATCTCTTACCCCAATCATGGGGCAGAT
26180315 TGCAGTTATC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 22 0.67
38 3 0.09
39 8 0.24
ACGTcount: A:0.26, C:0.39, G:0.18, T:0.18
Consensus pattern (39 bp):
CAGCCACCCAATCTCTTACCCCAATCATGGGGCAGATCA
Found at i:26181000 original size:209 final size:209
Alignment explanation
Indices: 26180342--26181199 Score: 1230
Period size: 209 Copynumber: 4.1 Consensus size: 209
26180332 ATAAAGCGAT
*** * * *
26180342 CGTCTTCCTGATGAGATACAGAGAAACAAATTAAAAAAAGTGATGCGGTCATCTTCCTGATGAAA
1 CGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGA
* * * *
26180407 TACAAAGAAGTATACCAAATCAATGAAACAAGGCTCAATATGAGCGAAACATCGAACCCTAGCTT
66 TACAAAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTT
*
26180472 CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAAAG
131 CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAG
26180537 AAGTGGACCAAATC
196 AAGTGGACCAAATC
*
26180551 CGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAAGTGAGGTGGTCATCTTCCTGATGAGA
1 CGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGA
* * *
26180616 TACAAAGAAGTATACTAAATCAAT-------AGCTCAATGTGAGCGAAACTTCAAACTCCAGCTT
66 TACAAAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTT
* * * * *
26180674 CTTGATGAGGTATTGAGAAGCAGGTTGAAGCAAT-AAATGGTCGTCTTCCGGATGAGATACAGAG
131 CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAG
*
26180738 AAGTGGACCAAATT
196 AAGTGGACCAAATC
* * * * * *
26180752 TGTCTTCCTGATGAGATATAGAGAAACGGATTAAAACAAGTGATGCAGTCATCTTCTTGATGAGA
1 CGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGA
* * *
26180817 TACAGAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAATTTTGAACCCCAGCTT
66 TACAAAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTT
* *
26180882 CCTGATGAGGTACTGAGAAGCAGGTTGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAG
131 CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAG
*
26180947 AAGTGGACTAAATC
196 AAGTGGACCAAATC
* * *
26180961 CATCTTCTTGATGAGATACA-ATAAAGTGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAG
1 CGTCTTCCTGATGAGATACAGAGAAA-TGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAG
* * * *
26181025 ATACAGAGAAGTATACCAAATCAATGAAATAAAGCTCAATGTGAGTGAAACTTCGAATCCCAGCT
65 ATACAAAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCT
* * *
26181090 TCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTCCCTGATGAGGTACAGA
130 TCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGA
*
26181155 GAAGTGGACTAAATC
195 GAAGTGGACCAAATC
* *
26181170 TGTCTTCCTGATGAGATACAGAGAAGTGGA
1 CGTCTTCCTGATGAGATACAGAGAAATGGA
26181200 CCAAATCAGT
Statistics
Matches: 576, Mismatches: 63, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
201 121 0.21
202 58 0.10
208 66 0.11
209 328 0.57
210 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (209 bp):
CGTCTTCCTGATGAGATACAGAGAAATGGATTAAAACAAGTGAGGCGGTCATCTTCCTGATGAGA
TACAAAGAAGTATACCAAATCAATGAAACAAAGCTCAATGTGAGCGAAACTTCGAACCCCAGCTT
CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGATACAGAG
AAGTGGACCAAATC
Found at i:26181190 original size:37 final size:37
Alignment explanation
Indices: 26181134--26181233 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
26181124 TAAAATGGTC
* * * *
26181134 GTCTCCCTGATGAGGTACAGAGAAGTGGACTAAATCT
1 GTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCA
26181171 GTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCA
1 GTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCA
* * *
26181208 GTCTTTCTGATGAGATATAAAGAAGT
1 GTCTTCCTGATGAGATACAGAGAAGT
26181234 AGGGCGAAGC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (37 bp):
GTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCA
Found at i:26181317 original size:122 final size:122
Alignment explanation
Indices: 26181092--26181325 Score: 263
Period size: 122 Copynumber: 1.9 Consensus size: 122
26181082 TCCCAGCTTC
** * * * *
26181092 CTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTCCCTGATGAGGTACAGAGA
1 CTGATGAGATATAAAGAAGCAGGGCGAAGCAATAAAATGGTCATCTCCCTGACGAGATACAGAGA
* * ** * * * *
26181157 AGTGGACTAAATCTGTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCAGTCTTT
66 AGTGAACCAAATCCATCTTCCTGATAAAATACAAAGAAGTAGACCAAATCAGTCTTT
* * * * *
26181214 CTGATGAGATATAAAGAAGTAGGGCGAAGCAATAAAGTGGTCATCTTCTTGACGAGATGCAGAGA
1 CTGATGAGATATAAAGAAGCAGGGCGAAGCAATAAAATGGTCATCTCCCTGACGAGATACAGAGA
* *
26181279 AGTGAACCAAATCCATCTT-CTTAGTAAAATTCAAAGAAGTAGACCAA
66 AGTGAACCAAATCCATCTTCCTGA-TAAAATACAAAGAAGTAGACCAA
26181326 GATATGAAGT
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
121 3 0.03
122 87 0.97
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (122 bp):
CTGATGAGATATAAAGAAGCAGGGCGAAGCAATAAAATGGTCATCTCCCTGACGAGATACAGAGA
AGTGAACCAAATCCATCTTCCTGATAAAATACAAAGAAGTAGACCAAATCAGTCTTT
Found at i:26181655 original size:17 final size:17
Alignment explanation
Indices: 26181616--26181666 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
26181606 CTTAAACCCA
* *
26181616 ATTTTAATTTTTAATTT
1 ATTTTAAATTTAAATTT
*
26181633 -TTTTAAGTTTAAATTT
1 ATTTTAAATTTAAATTT
*
26181649 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
26181666 A
1 A
26181667 ATTAAAAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:26183429 original size:29 final size:29
Alignment explanation
Indices: 26183396--26183812 Score: 247
Period size: 29 Copynumber: 14.4 Consensus size: 29
26183386 AAACTTTTCC
* *
26183396 AAAATTGCATTTTCACCCTCGAACTTCTTA
1 AAAATTACATTTTTACCCTCGAACTTC-TA
* * *
26183426 AAATTTACATTTTTGCCC-CAAACTT-TCA
1 AAAATTACATTTTTACCCTCGAACTTCT-A
* *
26183454 AAAATTACATTTTTACCC-CTAAACTTTTTA
1 AAAATTACATTTTTACCCTC-GAAC-TTCTA
26183484 AAAATTACATTTTTA-CCTCTGAACTTCTA
1 AAAATTACATTTTTACCCTC-GAACTTCTA
* *
26183513 AAAGTTACTTTTTTACCCAT-GAACTTC-A
1 AAAATTACATTTTTACCC-TCGAACTTCTA
*
26183541 AAAATTTGCATTTTTACCC-CGAACTTCTCA
1 AAAA-TTACATTTTTACCCTCGAACTTCT-A
* * *
26183571 AAAATTACATTTTTACTCT-TAACTTC-C
1 AAAATTACATTTTTACCCTCGAACTTCTA
**
26183598 AAAATTGTA-TTTTACCCTCGAACTTCTCA
1 AAAATTACATTTTTACCCTCGAACTTCT-A
* * *
26183627 AAAATTACATTTTT-GCCTCTAAACTTCCA
1 AAAATTACATTTTTACCCTC-GAACTTCTA
* ** * *
26183656 AAAATTGCAAATTTGCCCTCGAACTTCCA
1 AAAATTACATTTTTACCCTCGAACTTCTA
** *
26183685 AAAATTATGTTTTTACTCCT-GAAATT-TCA
1 AAAATTACATTTTTAC-CCTCGAACTTCT-A
* * *
26183714 AAAATTATATTTTT-CCCTCGAACTCCCA
1 AAAATTACATTTTTACCCTCGAACTTCTA
* * * *
26183742 AAAATCACGTTTTTA-CCTCAAATTTTCCT-
1 AAAATTACATTTTTACCCTCGAA-CTT-CTA
* **
26183771 AAAATGACATTTTTACCCCTAAAACTTCT-
1 AAAATTACATTTTTA-CCCTCGAACTTCTA
*
26183800 AAAATTACGTTTT
1 AAAATTACATTTT
26183813 ATCCCCAAGC
Statistics
Matches: 302, Mismatches: 58, Indels: 55
0.73 0.14 0.13
Matches are distributed among these distances:
26 8 0.03
27 17 0.06
28 52 0.17
29 153 0.51
30 64 0.21
31 8 0.03
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (29 bp):
AAAATTACATTTTTACCCTCGAACTTCTA
Found at i:26183743 original size:143 final size:142
Alignment explanation
Indices: 26183483--26183744 Score: 307
Period size: 143 Copynumber: 1.8 Consensus size: 142
26183473 TAAACTTTTT
* * * ***
26183483 AAAAATTACATTTTTACCTCTGAACTTCTAAAAGTTACTTTTTTACCCATGAACTTCAAAAATTT
1 AAAAATTACATTTTTACCTCTAAACTTCCAAAAATTACAAATTTACCCATGAACTTCAAAAATTT
* * *
26183548 GCATTTTTACCCCGAACTTCTCAAAAATTACATTTTTACTCTTAACTTCCAAAATTGTATTTTAC
66 G-ATTTTTACCCCGAAATTCTCAAAAATTACATTTTTACTCTGAACTCCCAAAATTGTATTTTAC
26183613 CCTCGAACTTCTC
130 CCTCGAACTTCTC
* * *
26183626 AAAAATTACATTTTTGCCTCTAAACTTCCAAAAATTGCAAATTTGCCC-TCGAACTTCCAAAAAT
1 AAAAATTACATTTTTACCTCTAAACTTCCAAAAATTACAAATTTACCCAT-GAACTT-CAAAAAT
* * *
26183690 TATG-TTTTTACTCCTGAAATT-TCAAAAATTATATTTTT-CCCTCGAACTCCCAAAA
64 T-TGATTTTTAC-CCCGAAATTCTCAAAAATTACATTTTTACTCT-GAACTCCCAAAA
26183745 ATCACGTTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
142 4 0.04
143 78 0.79
144 15 0.15
145 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (142 bp):
AAAAATTACATTTTTACCTCTAAACTTCCAAAAATTACAAATTTACCCATGAACTTCAAAAATTT
GATTTTTACCCCGAAATTCTCAAAAATTACATTTTTACTCTGAACTCCCAAAATTGTATTTTACC
CTCGAACTTCTC
Found at i:26183775 original size:57 final size:56
Alignment explanation
Indices: 26183452--26183784 Score: 187
Period size: 57 Copynumber: 5.8 Consensus size: 56
26183442 CCCAAACTTT
* * ** * * *
26183452 CAAAAATTACATTTTTACCCCTAAACTTTTTAAAAATTACATTTTTACCTCTGAACTTC
1 CAAAAATTACGTTTTTACCTC-AAA-TTTCCAAAAATTATATTTTTCCCTC-GAACTCC
* * * * *
26183511 TAAAAGTTACTTTTTTACC-CATGAACTT-CAAAAATT-TGCATTTTTACCC-CGAACTTCT
1 CAAAAATTACGTTTTTACCTCA--AATTTCCAAAAATTAT--ATTTTT-CCCTCGAAC-TCC
* * * * * *
26183569 CAAAAATTACATTTTTA-CTCTTAACTTCC-AAAATTGTATTTTACCCTCGAACTTCT
1 CAAAAATTACGTTTTTACCTC-AAATTTCCAAAAATTATATTTTTCCCTCGAAC-TCC
* * * * * *
26183625 CAAAAATTACATTTTTGCCTCTAAACTTCCAAAAATTGCA-AATTTGCCCTCGAACTTC
1 CAAAAATTACGTTTTTACCTC-AAATTTCCAAAAATT--ATATTTTTCCCTCGAACTCC
* *
26183683 CAAAAATTATGTTTTTACTCCTGAAATTT-CAAAAATTATATTTTTCCCTCGAACTCC
1 CAAAAATTACGTTTTTA--CCTCAAATTTCCAAAAATTATATTTTTCCCTCGAACTCC
* * * *
26183740 CAAAAATCACGTTTTTACCTCAAATTTTCCTAAAATGACATTTTT
1 CAAAAATTACGTTTTTACCTCAAA-TTTCCAAAAATTATATTTTT
26183785 ACCCCTAAAA
Statistics
Matches: 219, Mismatches: 35, Indels: 42
0.74 0.12 0.14
Matches are distributed among these distances:
55 9 0.04
56 34 0.16
57 78 0.36
58 57 0.26
59 38 0.17
60 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.39
Consensus pattern (56 bp):
CAAAAATTACGTTTTTACCTCAAATTTCCAAAAATTATATTTTTCCCTCGAACTCC
Found at i:26184214 original size:97 final size:97
Alignment explanation
Indices: 26184096--26184286 Score: 276
Period size: 97 Copynumber: 2.0 Consensus size: 97
26184086 AAAATATTTA
* * *
26184096 AAATCGAGGCAATATTTCTTTATTTTGGGTTTTG-AAAATTCATGCATTAACTTATTAGGCGCAA
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAAATT-ATGCATTAACTCATTAGGCGCAA
* *
26184160 TTTTTCTTCAAACCAGGATAATCGAATACCTTT
65 TTATTCTTCAAACCAGAATAATCGAATACCTTT
* * * *
26184193 AAATCGAGGCAGTATTCCTTTATTTCGGGTTTTGAAAAATTGTGCCTTAACTCATTAGGCGCGAT
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAAATTATGCATTAACTCATTAGGCGCAAT
*
26184258 TATTCTTCAAACTAGAATAATCGAATACC
66 TATTCTTCAAACCAGAATAATCGAATACC
26184287 CTTTTTCAAG
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 77 0.93
98 6 0.07
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAAATTATGCATTAACTCATTAGGCGCAAT
TATTCTTCAAACCAGAATAATCGAATACCTTT
Found at i:26185135 original size:50 final size:50
Alignment explanation
Indices: 26185093--26185296 Score: 322
Period size: 51 Copynumber: 4.1 Consensus size: 50
26185083 ACAATACAAG
*
26185093 TAAATATTTATATTTATGTAAAACACCAGATCTGAACAAAACAATTTAAA
1 TAAATATTTATATTTATATAAAACACCAGATCTGAACAAAACAATTTAAA
26185143 TAAATATTTATATTTATATAAAACACCAGATCTGAACAAAAACAATTTAAA
1 TAAATATTTATATTTATATAAAACACCAGATCTGAAC-AAAACAATTTAAA
* * *
26185194 TAAAAAATTATATTTATATAAAACATCAGATCTGAACAAAAACAATTTAAA
1 TAAATATTTATATTTATATAAAACACCAGATCTGAAC-AAAACAATTTAAA
* *
26185245 TAAATATTT-T-TTTATATAAAACACTAGATCTGAACAAAACAATTTAGA
1 TAAATATTTATATTTATATAAAACACCAGATCTGAACAAAACAATTTAAA
26185293 TAAA
1 TAAA
26185297 CAAAAATCTG
Statistics
Matches: 144, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
48 16 0.11
49 23 0.16
50 37 0.26
51 68 0.47
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (50 bp):
TAAATATTTATATTTATATAAAACACCAGATCTGAACAAAACAATTTAAA
Found at i:26185317 original size:100 final size:101
Alignment explanation
Indices: 26185112--26185318 Score: 278
Period size: 100 Copynumber: 2.1 Consensus size: 101
26185102 ATATTTATGT
26185112 AAAACACCAGATCTGAACAAAACAATTTAAATAAATATTTATATTTATATAAAACACCAGATCTG
1 AAAACACCAGATCTGAACAAAACAATTTAAATAAATATTTATATTTATATAAAACACCAGATCTG
* ** * *
26185177 AACAAAAACAATTTAAATAAAAAATTATATTTATAT
66 AACAAAAACAATTTAAATAAAAAATAATATAAAAAA
* *
26185213 AAAACATCAGATCTGAACAAAAACAATTTAAATAAATATTT-T-TTTATATAAAACACTAGATCT
1 AAAACACCAGATCTGAAC-AAAACAATTTAAATAAATATTTATATTTATATAAAACACCAGATCT
* *
26185276 GAAC-AAAACAATTTAGATAAACAAA-AATCTGAAAAAA
65 GAACAAAAACAATTTAAATAAA-AAATAATAT-AAAAAA
26185313 AAAACA
1 AAAACA
26185319 AAAATCAAAT
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
99 19 0.20
100 35 0.37
101 18 0.19
102 22 0.23
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (101 bp):
AAAACACCAGATCTGAACAAAACAATTTAAATAAATATTTATATTTATATAAAACACCAGATCTG
AACAAAAACAATTTAAATAAAAAATAATATAAAAAA
Found at i:26192018 original size:58 final size:58
Alignment explanation
Indices: 26191930--26192084 Score: 178
Period size: 58 Copynumber: 2.7 Consensus size: 58
26191920 ATATATTATA
* * *
26191930 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAA-AT-A-TTATTAAATTACAT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAACTAAATAAATTA-AT
* *
26191987 ATTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAACTAAATAAATTAAT
1 A-T-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAACTAAATAAATTAAT
26192047 ATTTTTATTAAATTATATTTAATAATAA-TA-ATTAAAAT
1 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAAT
26192085 TTAATAACAA
Statistics
Matches: 85, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
56 7 0.08
57 3 0.04
58 47 0.55
59 11 0.13
60 8 0.09
61 9 0.11
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAACTAAATAAATTAAT
Found at i:26192213 original size:39 final size:44
Alignment explanation
Indices: 26192158--26192262 Score: 114
Period size: 46 Copynumber: 2.5 Consensus size: 44
26192148 TTTCTTATGC
*
26192158 TATTACAGCATC-ATTCCATT-CAACCAA-ACACAA-GAA-TA-T
1 TATTACAGC-TCTATTCCATTCCAACCAACAAACAATGAATTACT
*
26192197 TATTACAGCTCTATTCCATTCCAATCAACCAAACAATTGAATTACT
1 TATTACAGCTCTATTCCATTCCAACCAA-CAAACAA-TGAATTACT
*
26192243 GATTACAGCTCTATTCCATT
1 TATTACAGCTCTATTCCATT
26192263 ACAGTTCTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
38 2 0.04
39 17 0.31
40 6 0.11
42 5 0.09
44 3 0.05
45 2 0.04
46 20 0.36
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (44 bp):
TATTACAGCTCTATTCCATTCCAACCAACAAACAATGAATTACT
Found at i:26192261 original size:46 final size:44
Alignment explanation
Indices: 26192169--26192262 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
26192159 ATTACAGCAT
* *
26192169 CATTCCATTCAACCAAACACAAGAATATTATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
*
26192213 CATTCCAATCAACCAAACA-ATTGAATTACTGATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACA-AGAA-TA-TGATTACAGCTCTATTC
26192259 CATT
1 CATT
26192263 ACAGTTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 2 0.05
46 20 0.45
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
Found at i:26192265 original size:16 final size:16
Alignment explanation
Indices: 26192244--26192299 Score: 94
Period size: 16 Copynumber: 3.5 Consensus size: 16
26192234 TGAATTACTG
26192244 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
26192260 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
26192276 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
26192292 ATTACAGC
1 ATTACAGC
26192300 GAACCAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:26196340 original size:26 final size:27
Alignment explanation
Indices: 26196302--26196356 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
26196292 TAGCAATAAA
*
26196302 TTTTTTTTCTTCT-TTTCTTTT-CTCT
1 TTTTTTTTCTTCTATTTATTTTCCTCT
26196327 TTTTTTTTCTTTCTATTTATTTTCCTCT
1 TTTTTTTTC-TTCTATTTATTTTCCTCT
26196355 TT
1 TT
26196357 CAAGTGATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.35
26 4 0.15
27 7 0.27
28 6 0.23
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTTTTTCTTCTATTTATTTTCCTCT
Found at i:26202083 original size:16 final size:17
Alignment explanation
Indices: 26202062--26202100 Score: 62
Period size: 16 Copynumber: 2.3 Consensus size: 17
26202052 TTGTTAGTCC
26202062 TGTCAATGCAA-TAAGT
1 TGTCAATGCAAGTAAGT
26202078 TGTCAATGCAAGTTAAGT
1 TGTCAATGCAAG-TAAGT
26202096 TGTCA
1 TGTCA
26202101 GAGTAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (17 bp):
TGTCAATGCAAGTAAGT
Found at i:26206520 original size:31 final size:31
Alignment explanation
Indices: 26206482--26206564 Score: 148
Period size: 31 Copynumber: 2.7 Consensus size: 31
26206472 TCAATTTTAG
*
26206482 AAAAGTGACAAAACAGTCACTGACGTTATCA
1 AAAAGTGACAAAACAATCACTGACGTTATCA
*
26206513 AAAAGTGACAAAACAATCATTGACGTTATCA
1 AAAAGTGACAAAACAATCACTGACGTTATCA
26206544 AAAAGTGACAAAACAATCACT
1 AAAAGTGACAAAACAATCACT
26206565 AATTAACATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.19
Consensus pattern (31 bp):
AAAAGTGACAAAACAATCACTGACGTTATCA
Found at i:26208883 original size:4 final size:4
Alignment explanation
Indices: 26208874--26208898 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26208864 TATTGTAATT
26208874 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
26208899 TGATTTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:26210043 original size:22 final size:23
Alignment explanation
Indices: 26209998--26210041 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26209988 ATTAAATTAA
*
26209998 ATTTTTATTATCTTTATAAATTT
1 ATTTTTATTATATTTATAAATTT
26210021 ATTTTTATTA-ATTTA-AAATTT
1 ATTTTTATTATATTTATAAATTT
26210042 TAAAATACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 4 0.20
23 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTTTATTATATTTATAAATTT
Found at i:26222158 original size:20 final size:19
Alignment explanation
Indices: 26222124--26222189 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
26222114 TTTTAAAGAA
26222124 TATAAAATATTCAAAATAATGT
1 TATAAAAT-TTCAAAAT-AT-T
26222146 T-TAAAATTTCAAAATATT
1 TATAAAATTTCAAAATATT
*
26222164 TATAAAAATTTCAAAAT-TC
1 TAT-AAAATTTCAAAATATT
26222183 TATAAAA
1 TATAAAA
26222190 ATTTATAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 6 0.15
19 7 0.17
20 21 0.51
21 6 0.15
22 1 0.02
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (19 bp):
TATAAAATTTCAAAATATT
Found at i:26222190 original size:20 final size:20
Alignment explanation
Indices: 26222148--26222193 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26222138 AATAATGTTT
*
26222148 AAAATTTCAAAATATTTATA
1 AAAATTTCAAAATATCTATA
26222168 AAAATTTCAAAAT-TCTATA
1 AAAATTTCAAAATATCTATA
26222187 AAAATTT
1 AAAATTT
26222194 ATAAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTTCAAAATATCTATA
Found at i:26222192 original size:11 final size:10
Alignment explanation
Indices: 26222148--26222214 Score: 52
Period size: 10 Copynumber: 6.8 Consensus size: 10
26222138 AATAATGTTT
26222148 AAAATTTCA-A
1 AAAATTT-ATA
*
26222158 AATATTTATA
1 AAAATTTATA
*
26222168 AAAA-TT-TC
1 AAAATTTATA
26222176 AAAATTCTATA
1 AAAATT-TATA
26222187 AAAATTTATA
1 AAAATTTATA
*
26222197 AAATTTTCA-A
1 AAAATTT-ATA
26222207 AAAATTTA
1 AAAATTTA
26222215 AAAGGTTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
8 5 0.11
9 5 0.11
10 28 0.61
11 8 0.17
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTTATA
Found at i:26222199 original size:20 final size:20
Alignment explanation
Indices: 26222148--26222214 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
26222138 AATAATGTTT
*
26222148 AAAATTT-CAAAATATTTATA
1 AAAATTTACAAAAT-TCTATA
26222168 AAAATTT-CAAAATTCTATA
1 AAAATTTACAAAATTCTATA
* *
26222187 AAAATTTATAAAATTTTCA-A
1 AAAATTTACAAAATTCT-ATA
26222207 AAAATTTA
1 AAAATTTA
26222215 AAAGGTTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 12 0.29
20 29 0.69
21 1 0.02
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTTACAAAATTCTATA
Found at i:26222209 original size:19 final size:19
Alignment explanation
Indices: 26222148--26222202 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 19
26222138 AATAATGTTT
26222148 AAAATTTCAAAATATTTATA
1 AAAATTTCAAAA-ATTTATA
26222168 AAAATTTC-AAAATTCTATA
1 AAAATTTCAAAAATT-TATA
26222187 AAAATTT-ATAAAATTT
1 AAAATTTCA-AAAATTT
26222203 TCAAAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.09
19 15 0.47
20 14 0.44
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTTCAAAAATTTATA
Found at i:26222614 original size:16 final size:15
Alignment explanation
Indices: 26222579--26222630 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
26222569 TATTTTAATT
*
26222579 AATTAAAAATTCTATAA
1 AATTAAAAAAT-T-TAA
*
26222596 AATTCTAAAAATTTAA
1 AATT-AAAAAATTTAA
26222612 AATTAAAAAATTTCAA
1 AATTAAAAAATTT-AA
26222628 AAT
1 AAT
26222631 GATAAATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 8 0.27
16 12 0.40
17 5 0.17
18 5 0.17
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTAAAAAATTTAA
Found at i:26223296 original size:31 final size:33
Alignment explanation
Indices: 26223227--26223297 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
26223217 TTCCTCCAAG
* * *
26223227 AAAGAAAACTGGACAAGAAAAAAAAATACTCTA
1 AAAGAATACTGGAAAAGAAAAAAAAATACTCAA
* *
26223260 GAAGAATACTTGAAAAG-AAAAAAAA-ACTCAA
1 AAAGAATACTGGAAAAGAAAAAAAAATACTCAA
26223291 AAAGAAT
1 AAAGAAT
26223298 TTGAATAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 11 0.34
32 8 0.25
33 13 0.41
ACGTcount: A:0.65, C:0.10, G:0.13, T:0.13
Consensus pattern (33 bp):
AAAGAATACTGGAAAAGAAAAAAAAATACTCAA
Found at i:26233399 original size:31 final size:31
Alignment explanation
Indices: 26233322--26233399 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
26233312 CCAAACATCT
* *
26233322 TTCTTGATATTAATGCCTTTTCTAAATATCT
1 TTCTTGATATTAATGCCTTTCCTAAATATCC
* *
26233353 TTCTTGATATCAATGCCTTTGCCT-AATTTCC
1 TTCTTGATATTAATGCCTTT-CCTAAATATCC
26233384 TTCTTGGA-ATTAATGC
1 TTCTT-GATATTAATGC
26233400 TTCTTTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 36 0.90
32 4 0.10
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.47
Consensus pattern (31 bp):
TTCTTGATATTAATGCCTTTCCTAAATATCC
Found at i:26244515 original size:153 final size:153
Alignment explanation
Indices: 26244232--26244560 Score: 480
Period size: 153 Copynumber: 2.2 Consensus size: 153
26244222 AAATGTTTAG
* * * * *
26244232 CTTCTTGATGAGATACTGAGAAATGGATCAAATTTGTTTTCCTGATGAGATACAAAGAAACGAAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATACAAAGAAACGAAT
** * *
26244297 TGAAACAAGTGAGGCGGTCATTTTCCTGATTAGATACAGAGAAGTACACCAACTCAAGGCTCAAT
66 TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAAT
*
26244362 GCGACCAAATCTTCGAACCCTAA
131 GCGACCAAATCTTCGAACCCCAA
* ** *
26244385 CTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATACAGAGAAGTGGAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATACAAAGAAACGAAT
*
26244450 TGAAACAAAAGAGGTGGTCATCTTCCTGATGAGATACAGAGAA-TGACACCAACTCAAGGCTCAA
66 TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGT-ACACCAACTCAAGGCTCAA
* *
26244514 TGCGAGCAAATCTTCGAACCCCAG
130 TGCGACCAAATCTTCGAACCCCAA
*
26244538 CTTCCTGATGAGATATTGAGAAG
1 CTTCCTGATGAGATACTGAGAAG
26244561 CAGGTCGAAG
Statistics
Matches: 157, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
152 1 0.01
153 156 0.99
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (153 bp):
CTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATACAAAGAAACGAAT
TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAAT
GCGACCAAATCTTCGAACCCCAA
Found at i:26244604 original size:201 final size:201
Alignment explanation
Indices: 26244385--26244897 Score: 787
Period size: 201 Copynumber: 2.6 Consensus size: 201
26244375 CGAACCCTAA
* *
26244385 CTTCCTGATGAGATACTGAGAAGTGGACCAAAATT-GTCTTCCTGATGAGATACAGAGAAGTGGA
1 CTTCCTGATGAGATACTGAGAAGTGGACC-AAATTCGTCTTCCTAATGAGATACAGAGAAGCGGA
*
26244449 TTGAAACAAAAGAGGTGGTCATCTTCCTGATGAGATACAGAGAA-TGACACCAACTCAAGGCTCA
65 TTGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGT-ACACCAACTCAAGGCTCA
* *
26244513 ATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAA
129 ATGCGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAA
*
26244578 ATTGTTAG
194 ATGGTTAG
26244586 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGAT
* * * * * * * *
26244651 TGAAACAGATGAGGCGGTTATCTTCTTGATGAGATACAGAGAAGTATACCAACTTAGGGCTCGAT
66 TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAAT
* *
26244716 GTGAGCAAATCTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAAT
131 GCGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAAT
26244781 GGTTAG
196 GGTTAG
*
26244787 CTTCCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGAT
1 CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGAT
** * * * *
26244852 TGAAACAAGCGATGCGATCATCTTCCTGATAAGATACTGAGAAGTA
66 TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTA
26244898 GATCAAATCA
Statistics
Matches: 284, Mismatches: 26, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
200 5 0.02
201 278 0.98
202 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (201 bp):
CTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGAT
TGAAACAAAAGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAAT
GCGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAAGTCGAAGCAATAAAAT
GGTTAG
Found at i:26244761 original size:354 final size:354
Alignment explanation
Indices: 26244112--26244761 Score: 1011
Period size: 354 Copynumber: 1.8 Consensus size: 354
26244102 TAGTGAGACA
* *
26244112 GTCATCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAGGCTCAATACGAGTAAATCTTCGA
1 GTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAATACGAGCAAATCTTCGA
* *
26244177 ACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGTAATAAAATGTTTAGCTTCTTGATG
66 ACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGTTTAGCTTCCTGATG
* * * *
26244242 AGATACTGAGAAATGGATCAAATTTGTTTTCCTGATGAGATACAAAGAAACGAATTGAAACAAGT
131 AGATACTGAGAAATGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAACGAATTGAAACAAGT
* *
26244307 GAGGCGGTCATTTTCCTGATTAGATACAGAGAAGTACACCAACTCAAGGCTCAATGCGACCAAAT
196 GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAATGCGACCAAAT
26244372 CTTCGAACCCTAACTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATA
261 CTTCGAACCCTAACTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATA
26244437 CAGAGAAGTGGATTGAAACAAAAGAGGTG
326 CAGAGAAGTGGATTGAAACAAAAGAGGTG
*
26244466 GTCATCTTCCTGATGAGATACAGAGAA-TGACACCAACTCAAGGCTCAATGCGAGCAAATCTTCG
1 GTCATCTTCCTGATGAGATACAGAGAAGT-ACACCAACTCAAGGCTCAATACGAGCAAATCTTCG
*
26244530 AACCCCAGCTTCCTGATGAGATATTGAGAAGCAGGTCGAAGCAATAAAAT-TGTTAGCTTCCTGA
65 AACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGT-TTAGCTTCCTGA
* * * *
26244594 TGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGGATTGAAAC-A
129 TGAGATACTGAGAAATGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAACGAATTGAAACAA
* * * * * * * *
26244658 GATGAGGCGGTTATCTTCTTGATGAGATACAGAGAAGTATACCAACTTAGGGCTCGATGTGAGCA
194 G-TGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAATGCGACCA
*
26244723 AATCTTCGAATCCC-AGCTTCCTGATGAGATACTGAGAAG
258 AATCTTCGAA-CCCTAACTTCCTGATGAGATACTGAGAAG
26244762 CAAGTCGAAG
Statistics
Matches: 267, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
353 4 0.01
354 260 0.97
355 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (354 bp):
GTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAATACGAGCAAATCTTCGA
ACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGTTTAGCTTCCTGATG
AGATACTGAGAAATGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAACGAATTGAAACAAGT
GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTACACCAACTCAAGGCTCAATGCGACCAAAT
CTTCGAACCCTAACTTCCTGATGAGATACTGAGAAGTGGACCAAAATTGTCTTCCTGATGAGATA
CAGAGAAGTGGATTGAAACAAAAGAGGTG
Found at i:26245255 original size:12 final size:12
Alignment explanation
Indices: 26245234--26245266 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26245224 TAAAAATAAG
26245234 TTTAAA-TTATT
1 TTTAAATTTATT
*
26245245 TTTGAATTTATT
1 TTTAAATTTATT
26245257 TTTAAATTTA
1 TTTAAATTTA
26245267 AGTTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (12 bp):
TTTAAATTTATT
Found at i:26247215 original size:59 final size:59
Alignment explanation
Indices: 26247116--26247320 Score: 166
Period size: 59 Copynumber: 3.5 Consensus size: 59
26247106 TCATATTTTA
* * * ** * *
26247116 ACCCCAAACTTTTCAAAAATTACA-TTTGA-CCTCCGAACTTTCTAAAAATTATATTTCG
1 ACCCCAAACTTTCCAAAGATTACATTTTTATCCT-TAAACTTTCCAAAAATTACATTTCG
** *
26247174 AGCCTTAAACTTTCCAAA-ATTACATTTTTATCCTTAAACTTTCCAAAAATTACATTTTG
1 A-CCCCAAACTTTCCAAAGATTACATTTTTATCCTTAAACTTTCCAAAAATTACATTTCG
* * ** * *
26247233 ACCCCATACTTTCCAAAGATTACATTTTTACCCTCGAAC-TTCCAAAAATTCCATTTTTG
1 ACCCCAAACTTTCCAAAGATTACATTTTTATCCTTAAACTTTCCAAAAATTACA-TTTCG
* ** *
26247292 ACCCTAATTTTTCCAAAAATTACCATTTT
1 ACCCCAAACTTTCCAAAGATTA-CATTTT
26247321 ACTCTCAAAC
Statistics
Matches: 120, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
58 33 0.28
59 78 0.65
60 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (59 bp):
ACCCCAAACTTTCCAAAGATTACATTTTTATCCTTAAACTTTCCAAAAATTACATTTCG
Found at i:26247244 original size:88 final size:87
Alignment explanation
Indices: 26247111--26247555 Score: 259
Period size: 88 Copynumber: 5.0 Consensus size: 87
26247101 AGAAATCATA
* * * *
26247111 TTTTAACCCCAAACTTTTCAAAAATTACA-TTTGACCTCCGAACTTTCTAAAAATTATATTTCGA
1 TTTTGACCCTAAACTTTCCAAAAATTACATTTTGACC-CC-AACTTTCTAAAAATTACATTTCGA
* *
26247175 GCCTTAAACTTTCC-AAAATTACAT
64 CCCTCAAAC-TTCCAAAAATTACAT
* * * **
26247199 TTTT-ATCCTTAAACTTTCCAAAAATTACATTTTGACCCCATACTTTCCAAAGATTACATTTTTA
1 TTTTGA-CCCTAAACTTTCCAAAAATTACATTTTGACCCCA-ACTTTCTAAAAATTACATTTCGA
* *
26247263 CCCTCGAACTTCCAAAAATTCCAT
64 CCCTCAAACTTCCAAAAATTACAT
** * * **
26247287 TTTTGACCCTAATTTTTCCAAAAATTACCATTTT-ACTCTCAAAC-TTCTAAAAATTCCATTTTT
1 TTTTGACCCTAAACTTTCCAAAAATTA-CATTTTGAC-C-CCAACTTTCTAAAAATTACATTTCG
* * **
26247350 AACCTCGATTTTCCAAAAAGTTACCA-
63 ACCCTCAAACTTCCAAAAA-TTA-CAT
* * * * * *
26247376 TATT-ACCCCCAAAC-TT-CTAAAATTCCATTTTTGACCCCAATTTTTCCAAAAATTACCATTT-
1 TTTTGA-CCCTAAACTTTCCAAAAATTACA-TTTTGACCCCAA-CTTTCTAAAAATTA-CATTTC
* * *
26247437 TACCCTCGAACTTCCAAAAATTCCAT
62 GACCCTCAAACTTCCAAAAATTACAT
* * ** * *
26247463 TTTTAACCCCAATTTTTCCAAAAATTACCATTTT-ACCCTCAAACTTTC-AAAAATTCCATTTTT
1 TTTTGACCCTAAACTTTCCAAAAATTA-CATTTTGACCC-C-AACTTTCTAAAAATTACA-TTTC
* *
26247526 GACCCT-GAATTTCCCAAAAATTACCAT
62 GACCCTCAAACTT-CCAAAAATTA-CAT
26247553 TTT
1 TTT
26247556 ACCTTCGAAC
Statistics
Matches: 283, Mismatches: 47, Indels: 52
0.74 0.12 0.14
Matches are distributed among these distances:
86 7 0.02
87 31 0.11
88 169 0.60
89 62 0.22
90 14 0.05
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (87 bp):
TTTTGACCCTAAACTTTCCAAAAATTACATTTTGACCCCAACTTTCTAAAAATTACATTTCGACC
CTCAAACTTCCAAAAATTACAT
Found at i:26247305 original size:117 final size:115
Alignment explanation
Indices: 26247184--26247641 Score: 482
Period size: 117 Copynumber: 3.9 Consensus size: 115
26247174 AGCCTTAAAC
* * *
26247184 TTTCC-AAAATTA-CATTTTTATCCTTAAACTTTCCAAAAATTACA-TTTTGACCCCATACTTTC
1 TTTCCAAAAATTACCA-TTTTA-CCTCAAAC-TTCCAAAAATTCCATTTTTAACCCCATA-TTTC
* *
26247246 CAAAGATTA-CATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCTAATT
62 CAAAAATTACCA-TTTTACCCTCAAACTT-CAAAAATTCCATTTTTGACCCTAATT
* *
26247301 TTTCCAAAAATTACCATTTTACTCTCAAACTTCTAAAAATTCCATTTTTAACCTCGAT-TTTCCA
1 TTTCCAAAAATTACCATTTTAC-CTCAAACTTCCAAAAATTCCATTTTTAACC-CCATATTTCCA
* * * *
26247365 AAAAGTTACCATATTACCCCCAAACTTCTAAAATTCCATTTTTGACCCCAATT
64 AAAA-TTACCATTTTACCCTCAAACTTCAAAAATTCCATTTTTGACCCTAATT
* *
26247418 TTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTAACCCCAATTTTTCCA
1 TTTCCAAAAATTACCATTTTA-CCTCAAACTTCCAAAAATTCCATTTTTAACCCC-ATATTTCCA
26247483 AAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTGACCCTGAA-T
64 AAAATTACCATTTTACCCTCAAAC-TTCAAAAATTCCATTTTTGACCCT-AATT
* * * * ** ** * *
26247536 TTCCCAAAAATTACCATTTTACCTTCGAACTTCTAAAGATTCCATTTTCGACCTTAAAGTGT-CA
1 TTTCCAAAAATTACCATTTTACC-TCAAACTTCCAAAAATTCCATTTTTAACCCCATA-TTTCCA
* *
26247600 AAAATTACCATTTTACCCTCGAATA-TCCAAAAATTACATTTT
64 AAAATTACCATTTTACCCTC-AA-ACTTCAAAAATTCCATTTT
26247642 ATCCCGTCTG
Statistics
Matches: 295, Mismatches: 30, Indels: 32
0.83 0.08 0.09
Matches are distributed among these distances:
116 1 0.00
117 160 0.54
118 124 0.42
119 10 0.03
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (115 bp):
TTTCCAAAAATTACCATTTTACCTCAAACTTCCAAAAATTCCATTTTTAACCCCATATTTCCAAA
AATTACCATTTTACCCTCAAACTTCAAAAATTCCATTTTTGACCCTAATT
Found at i:26247321 original size:59 final size:59
Alignment explanation
Indices: 26247184--26247641 Score: 488
Period size: 59 Copynumber: 7.8 Consensus size: 59
26247174 AGCCTTAAAC
* * * * *
26247184 TTTCC-AAAATTA-CATTTTTATCCTTAAACTTTCCAAAAATTACA-TTTTGACCC-CATAC
1 TTTCCAAAAATTACCA-TTTTACCCTCAAAC-TTCCAAAAATTCCATTTTTGACCCTAAT-T
* *
26247242 TTTCCAAAGATTA-CATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCTAATT
1 TTTCCAAAAATTACCA-TTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAATT
* * * *
26247301 TTTCCAAAAATTACCATTTTACTCTCAAACTTCTAAAAATTCCATTTTT-AACCTCGA-T
1 TTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCT-AATT
* * * *
26247359 TTTCCAAAAAGTTACCATATTACCCCCAAACTT-CTAAAATTCCATTTTTGACCCCAATT
1 TTTCCAAAAA-TTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAATT
* * *
26247418 TTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTAACCCCAATT
1 TTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAATT
*
26247477 TTTCCAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTTTTGACCCTGAA-T
1 TTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCT-AATT
* * * * * * * **
26247536 TTCCCAAAAATTACCATTTTACCTTCGAACTTCTAAAGATTCCATTTTCGACCTTAAAG
1 TTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAATT
* * *
26247595 TGT-CAAAAATTACCATTTTACCCTCGAA-TATCCAAAAATTACATTTT
1 TTTCCAAAAATTACCATTTTACCCTCAAACT-TCCAAAAATTCCATTTT
26247642 ATCCCGTCTG
Statistics
Matches: 343, Mismatches: 45, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
57 1 0.00
58 107 0.31
59 229 0.67
60 6 0.02
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (59 bp):
TTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAATT
Found at i:26247425 original size:176 final size:176
Alignment explanation
Indices: 26247219--26247641 Score: 556
Period size: 176 Copynumber: 2.4 Consensus size: 176
26247209 AAACTTTCCA
* *
26247219 AAAATTACA-TTTTGACCCC-ATACTTTCCAAAGATTA-CATTTTTACCCTCGAACTTCCAAAAA
1 AAAATTCCATTTTTGACCCCAAT-CTTTCCAAAAATTACCA-TTTTACCCTCGAACTTCCAAAAA
* * *
26247281 TTCCATTTTTGACCCTAATTTTTCCAAAAATTACCATTTTACTCTCAAAC-TTCTAAAAATTCCA
64 TTCCATTTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAACTTTC-AAAAATTCCA
*
26247345 TTTTTAA-CCTCG-ATTTTCCAAAAAGTTACCATATTACCCCCAAACTTCT
128 TTTTTAACCCT-GAATTTCCCAAAAA-TTACCATATTACCCCCAAACTTCT
*
26247394 AAAATTCCATTTTTGACCCCAATTTTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATT
1 AAAATTCCATTTTTGACCCCAATCTTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATT
26247459 CCATTTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTT
66 CCATTTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTT
* * ** *
26247524 TTGACCCTGAATTTCCCAAAAATTACCATTTTACCTTCGAACTTCT
131 TTAACCCTGAATTTCCCAAAAATTACCATATTACCCCCAAACTTCT
* ** ** *
26247570 AAAGATTCCATTTTCGACCTTAAAGTGT-CAAAAATTACCATTTTACCCTCGAA-TATCCAAAAA
1 AAA-ATTCCATTTTTGACCCCAATCTTTCCAAAAATTACCATTTTACCCTCGAACT-TCCAAAAA
*
26247633 TTACATTTT
64 TTCCATTTT
26247642 ATCCCGTCTG
Statistics
Matches: 221, Mismatches: 19, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
175 9 0.04
176 173 0.78
177 39 0.18
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (176 bp):
AAAATTCCATTTTTGACCCCAATCTTTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATT
CCATTTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAACTTTCAAAAATTCCATTT
TTAACCCTGAATTTCCCAAAAATTACCATATTACCCCCAAACTTCT
Found at i:26247611 original size:30 final size:28
Alignment explanation
Indices: 26247121--26247616 Score: 160
Period size: 29 Copynumber: 16.9 Consensus size: 28
26247111 TTTTAACCCC
* *
26247121 AAACTTTTCAAAAATTA-CATTTGACCTCC
1 AAAC-TTTCAAAAATTACCATTTTACCT-T
* * *
26247150 GAACTTTCTAAAAATTA-TATTTCGAGCCTT
1 AAACTTTC-AAAAATTACCATTT-TA-CCTT
*
26247180 AAACTTTCCAAAATTA-CATTTTTATCCTT
1 AAACTTTCAAAAATTACCA-TTTTA-CCTT
**
26247209 AAACTTTCCAAAAATTA-CATTTTGACCCC
1 AAACTTT-CAAAAATTACCATTTT-ACCTT
* * *
26247238 ATACTTTCCAAAGATTA-CATTTTTACCCTC
1 AAACTTT-CAAAAATTACCA-TTTTA-CCTT
* * *
26247268 GAACTTCCAAAAATT-CCATTTTTGACCCT
1 AAACTTTCAAAAATTACCA-TTTT-ACCTT
** *
26247297 AATTTTTCCAAAAATTACCATTTTACTCTC
1 AAACTTT-CAAAAATTACCATTTTAC-CTT
26247327 AAAC-TTCTAAAAATT-CCATTTTTAACC-T
1 AAACTTTC-AAAAATTACCA-TTTT-ACCTT
** * * **
26247355 CGATTTTCCAAAAAGTTACCATATTACCCCC
1 AAACTTT-CAAAAA-TTACCATTTTA-CCTT
* **
26247386 AAAC-TTCTAAAATT-CCATTTTTGACCCC
1 AAACTTTCAAAAATTACCA-TTTT-ACCTT
** *
26247414 AATTTTTCCAAAAATTACCATTTTACCCTC
1 AAACTTT-CAAAAATTACCATTTTA-CCTT
* * **
26247444 GAACTTCCAAAAATT-CCATTTTTAACCCC
1 AAACTTTCAAAAATTACCA-TTTT-ACCTT
** *
26247473 AATTTTTCCAAAAATTACCATTTTACCCTC
1 AAACTTT-CAAAAATTACCATTTTA-CCTT
*
26247503 AAACTTTCAAAAATT-CCATTTTTGACCCT
1 AAACTTTCAAAAATTACCA-TTTT-ACCTT
*
26247532 GAA-TTTCCCAAAAATTACCATTTTACCTT
1 AAACTTT--CAAAAATTACCATTTTACCTT
* *
26247561 CGAAC-TTCTAAAGATT-CCATTTTCGACCTT
1 -AAACTTTC-AAAAATTACCATTTT--ACCTT
* *
26247591 AAAGTGTCAAAAATTACCATTTTACC
1 AAACTTTCAAAAATTACCATTTTACC
26247617 CTCGAATATC
Statistics
Matches: 358, Mismatches: 64, Indels: 91
0.70 0.12 0.18
Matches are distributed among these distances:
27 3 0.01
28 40 0.11
29 164 0.46
30 132 0.37
31 19 0.05
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.37
Consensus pattern (28 bp):
AAACTTTCAAAAATTACCATTTTACCTT
Found at i:26254004 original size:40 final size:41
Alignment explanation
Indices: 26253960--26254130 Score: 244
Period size: 40 Copynumber: 4.3 Consensus size: 41
26253950 CATGCGGTAA
26253960 ATTGAAGACCATCCAATCTTTTACCCTAAAC-AGAGGGCAG
1 ATTGAAGACCATCCAATCTTTTACCCTAAACTAGAGGGCAG
26254000 ATTGAAGACCATCCAATCTTTTACCCT-AACTAGAGGGCAG
1 ATTGAAGACCATCCAATCTTTTACCCTAAACTAGAGGGCAG
* ** * *
26254040 ATTGAAAACCATCCAATCTTTTACCCTAGCCTTG-GGGCAA
1 ATTGAAGACCATCCAATCTTTTACCCTAAACTAGAGGGCAG
* *
26254080 ATTGAAG-CAATCCAATCTTTTACCCT-AACCAGAGGGCAG
1 ATTGAAGACCATCCAATCTTTTACCCTAAACTAGAGGGCAG
26254119 ATTGAAGACCAT
1 ATTGAAGACCAT
26254131 TCGATCTCTT
Statistics
Matches: 114, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.29
40 76 0.67
41 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (41 bp):
ATTGAAGACCATCCAATCTTTTACCCTAAACTAGAGGGCAG
Found at i:26254130 original size:79 final size:78
Alignment explanation
Indices: 26253960--26254183 Score: 288
Period size: 79 Copynumber: 2.8 Consensus size: 78
26253950 CATGCGGTAA
** * * *
26253960 ATTGAAGACCATCCAATCTTTTACCCTAAACAGAGGGCAGATTGAAGACCATCCAATCTTTTACC
1 ATTGAAGACCATCCAATCTTTTACCCTAGCCTG-GGGCAAATTGAAG-CAATCCAATCTTTTACC
*
26254025 CTAACTAGAGGGCAG
64 CTAACCAGAGGGCAG
*
26254040 ATTGAAAACCATCCAATCTTTTACCCTAGCCTTGGGGCAAATTGAAGCAATCCAATCTTTTACCC
1 ATTGAAGACCATCCAATCTTTTACCCTAGCC-TGGGGCAAATTGAAGCAATCCAATCTTTTACCC
26254105 TAACCAGAGGGCAG
65 TAACCAGAGGGCAG
* * * * *
26254119 ATTGAAGACCATTCGATCTCTTA-CCTCGACCATGGGGCAAATTGAAGCAATCTAATCTTTTACC
1 ATTGAAGACCATCCAATCTTTTACCCTAG-CC-TGGGGCAAATTGAAGCAATCCAATCTTTTACC
26254183 C
64 C
26254184 CTAAAGCTAT
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
78 4 0.03
79 83 0.65
80 40 0.31
81 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (78 bp):
ATTGAAGACCATCCAATCTTTTACCCTAGCCTGGGGCAAATTGAAGCAATCCAATCTTTTACCCT
AACCAGAGGGCAG
Found at i:26254186 original size:119 final size:120
Alignment explanation
Indices: 26253958--26254183 Score: 307
Period size: 119 Copynumber: 1.9 Consensus size: 120
26253948 ACCATGCGGT
* *
26253958 AAATTGAAGACCATCCAATCTTTTACCCTAAACAGAGGGCAGATTGAAGACCATCCAATCTTTTA
1 AAATTGAAGACAATCCAATCTTTTACCCTAAACAGAGGGCAGATTGAAGACCATCCAATCTCTTA
* * *
26254023 CCCTAACTAGAGGGCAGATTGAAAACCATCCAATCTTTTACCCTAGCCTTGGGGC
66 CCCGAACTAGAGGGCAAATTGAAAACAATCCAATCTTTTACCCTAGCCTTGGGGC
* * *
26254078 AAATTGAAG-CAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATTCGATCTCTTA
1 AAATTGAAGACAATCCAATCTTTTACCCTAAACAGAGGGCAGATTGAAGACCATCCAATCTCTTA
* * *
26254142 CCTCG-ACCATG-GGGCAAATTG-AAGCAATCTAATCTTTTACCC
66 CC-CGAACTA-GAGGGCAAATTGAAAACAATCCAATCTTTTACCC
26254184 CTAAAGCTAT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
118 18 0.19
119 64 0.69
120 11 0.12
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (120 bp):
AAATTGAAGACAATCCAATCTTTTACCCTAAACAGAGGGCAGATTGAAGACCATCCAATCTCTTA
CCCGAACTAGAGGGCAAATTGAAAACAATCCAATCTTTTACCCTAGCCTTGGGGC
Found at i:26255775 original size:26 final size:26
Alignment explanation
Indices: 26255739--26255788 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26255729 TCAACCTTTT
*
26255739 TTTTAATTATT-TTAATTTTTATTTCC
1 TTTTAATTATTATT-ATTATTATTTCC
*
26255765 TTTTATTTATTATTATTATTATTT
1 TTTTAATTATTATTATTATTATTT
26255789 AGTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTTAATTATTATTATTATTATTTCC
Found at i:26257011 original size:28 final size:28
Alignment explanation
Indices: 26256971--26257027 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
26256961 TTCTTGAAAG
26256971 TAGAATTAGAACTCATACCTCTATAATA
1 TAGAATTAGAACTCATACCTCTATAATA
*
26256999 TAGAATTAGAACTCGTACCTCTATAATA
1 TAGAATTAGAACTCATACCTCTATAATA
26257027 T
1 T
26257028 TGTGATGCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (28 bp):
TAGAATTAGAACTCATACCTCTATAATA
Found at i:26270462 original size:13 final size:13
Alignment explanation
Indices: 26270444--26270468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26270434 CCCATTTTAT
26270444 CATTTTTAGCATG
1 CATTTTTAGCATG
26270457 CATTTTTAGCAT
1 CATTTTTAGCAT
26270469 TTTTAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (13 bp):
CATTTTTAGCATG
Done.