Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 86 of 125
Found at i:26515146 original size:14 final size:14
Alignment explanation
Indices: 26515127--26515165 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
26515117 CCGAATCTTT
*
26515127 AAACCCAAAATATA
1 AAACCCAAAACATA
*
26515141 AAACCCAAAACATG
1 AAACCCAAAACATA
*
26515155 AAACTCAAAAC
1 AAACCCAAAAC
26515166 CCTAAATATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.62, C:0.26, G:0.03, T:0.10
Consensus pattern (14 bp):
AAACCCAAAACATA
Found at i:26515179 original size:21 final size:21
Alignment explanation
Indices: 26515140--26515179 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26515130 CCCAAAATAT
*
26515140 AAAACCCAAAACATGAAACTC
1 AAAACCCAAAACATCAAACTC
* *
26515161 AAAACCCTAAATATCAAAC
1 AAAACCCAAAACATCAAAC
26515180 CTTAAACTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.28, G:0.03, T:0.12
Consensus pattern (21 bp):
AAAACCCAAAACATCAAACTC
Found at i:26515247 original size:27 final size:27
Alignment explanation
Indices: 26515211--26515282 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
26515201 CCTAAATCTT
* * *
26515211 TAAATCTTAAATCCTAAACCCTAAACA
1 TAAACCTTAAATCCAAAACCCGAAACA
* * *
26515238 TAAACCTTAAATTCAAAACCCGAACCC
1 TAAACCTTAAATCCAAAACCCGAAACA
*
26515265 TAAACTTTAAATCTCAAA
1 TAAACCTTAAATC-CAAA
26515283 CTCAAATCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
27 32 0.89
28 4 0.11
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.25
Consensus pattern (27 bp):
TAAACCTTAAATCCAAAACCCGAAACA
Found at i:26518148 original size:21 final size:21
Alignment explanation
Indices: 26518120--26518178 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
26518110 ACAACAGTAG
*
26518120 ACTTCTACCGATACTAGGGAT
1 ACTTCTACCGATACAAGGGAT
** * *
26518141 GGTTCTACCAATACAAGTGAT
1 ACTTCTACCGATACAAGGGAT
*
26518162 ACTTCTACCGAAACAAG
1 ACTTCTACCGATACAAG
26518179 TCATGCTTCA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (21 bp):
ACTTCTACCGATACAAGGGAT
Found at i:26518187 original size:21 final size:21
Alignment explanation
Indices: 26518143--26518195 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
26518133 CTAGGGATGG
*
26518143 TTCTACCAATACAAGTGATAC
1 TTCTACCAATACAAGTCATAC
*
26518164 TTCTACCGAA-ACAAGTCATGC
1 TTCTACC-AATACAAGTCATAC
*
26518185 TTC-ACTAATAC
1 TTCTACCAATAC
26518196 TAAAAACTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.07
20 4 0.15
21 19 0.70
22 2 0.07
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.28
Consensus pattern (21 bp):
TTCTACCAATACAAGTCATAC
Found at i:26518281 original size:21 final size:22
Alignment explanation
Indices: 26518236--26518288 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
26518226 CTTGCAACTT
26518236 CTACCGATACAAGCACCCCAGA
1 CTACCGATACAAGCACCCCAGA
*
26518258 CTACCGATACAAGCA-CCTAGA
1 CTACCGATACAAGCACCCCAGA
26518279 CTACCGATAC
1 CTACCGATAC
26518289 TTCTATGAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.36, C:0.38, G:0.13, T:0.13
Consensus pattern (22 bp):
CTACCGATACAAGCACCCCAGA
Found at i:26518946 original size:18 final size:18
Alignment explanation
Indices: 26518911--26518973 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
26518901 CTCCTGCGAT
**
26518911 CCAGTAATGCTCTTACGAG
1 CCAGT-ATGCTCAAACGAG
26518930 CCAGTATGCTCAAACGAG
1 CCAGTATGCTCAAACGAG
* * * *
26518948 CTAATATACTCAAACGAA
1 CCAGTATGCTCAAACGAG
26518966 CCAGTATG
1 CCAGTATG
26518974 TTATACCTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
18 30 0.86
19 5 0.14
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (18 bp):
CCAGTATGCTCAAACGAG
Found at i:26522472 original size:3 final size:3
Alignment explanation
Indices: 26522412--26522453 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
26522402 ATTTCCCTAT
26522412 TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26522454 CTCAACCTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:26532147 original size:21 final size:19
Alignment explanation
Indices: 26532121--26532171 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
26532111 GGAGTTTTTG
26532121 GTATCGGTAAATGCATGACTT
1 GTATCGGTAAAT-CATG-CTT
*
26532142 GTATCGTTAGAAATCATGCTT
1 GTATCGGT--AAATCATGCTT
26532163 GTATCGGTA
1 GTATCGGTA
26532172 GCTACTACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.04
21 17 0.65
22 4 0.15
23 4 0.15
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (19 bp):
GTATCGGTAAATCATGCTT
Found at i:26541155 original size:15 final size:16
Alignment explanation
Indices: 26541131--26541163 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26541121 ATTACACAAT
26541131 AAAAACAAATAAGATG
1 AAAAACAAATAAGATG
*
26541147 AAAAA-AAATGAGATG
1 AAAAACAAATAAGATG
26541162 AA
1 AA
26541164 TGAATTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.70, C:0.03, G:0.15, T:0.12
Consensus pattern (16 bp):
AAAAACAAATAAGATG
Found at i:26541175 original size:6 final size:6
Alignment explanation
Indices: 26541164--26541198 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
26541154 ATGAGATGAA
26541164 TGAATT TGAATT TGAA-T TGAATT TGAATT TGAATT
1 TGAATT TGAATT TGAATT TGAATT TGAATT TGAATT
26541199 AATTAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
TGAATT
Found at i:26541185 original size:11 final size:12
Alignment explanation
Indices: 26541164--26541198 Score: 63
Period size: 11 Copynumber: 3.0 Consensus size: 12
26541154 ATGAGATGAA
26541164 TGAATTTGAATT
1 TGAATTTGAATT
26541176 TGAA-TTGAATT
1 TGAATTTGAATT
26541187 TGAATTTGAATT
1 TGAATTTGAATT
26541199 AATTAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (12 bp):
TGAATTTGAATT
Found at i:26541186 original size:17 final size:17
Alignment explanation
Indices: 26541160--26541202 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
26541150 AAAAATGAGA
26541160 TGAA-TGAATTTGAATT
1 TGAATTGAATTTGAATT
26541176 TGAATTGAATTTGAATT
1 TGAATTGAATTTGAATT
26541193 TGAATT-AATT
1 TGAATTGAATT
26541203 AATTTATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (17 bp):
TGAATTGAATTTGAATT
Found at i:26541591 original size:18 final size:19
Alignment explanation
Indices: 26541549--26541591 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26541539 ATACACGGTG
*
26541549 TATTTTTATTAAGTAAAGA
1 TATTTTTATTAAGTAAAAA
* *
26541568 TTTTTTTA-TAATTAAAAA
1 TATTTTTATTAAGTAAAAA
26541586 TATTTT
1 TATTTT
26541592 ATTCATGGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TATTTTTATTAAGTAAAAA
Found at i:26542407 original size:16 final size:16
Alignment explanation
Indices: 26542388--26542444 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
26542378 TTTTTAGAAG
26542388 TATTTTTGAAATAAAA
1 TATTTTTGAAATAAAA
*
26542404 TATTTTTGAGATAAAAA
1 TATTTTTGAAAT-AAAA
*
26542421 TATTGTT-AAATAAAA
1 TATTTTTGAAATAAAA
*
26542436 TGTTTTTGA
1 TATTTTTGA
26542445 GTTTTTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 9 0.26
16 15 0.44
17 10 0.29
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.46
Consensus pattern (16 bp):
TATTTTTGAAATAAAA
Found at i:26542483 original size:18 final size:16
Alignment explanation
Indices: 26542459--26542497 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26542449 TTTTAAAGTG
26542459 TTTTTGGAACAAAAAAA
1 TTTTTGGAA-AAAAAAA
*
26542476 TGTTTTGGAAAAACAAA
1 T-TTTTGGAAAAAAAAA
26542493 TTTTT
1 TTTTT
26542498 CATCAAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (16 bp):
TTTTTGGAAAAAAAAA
Found at i:26547756 original size:30 final size:30
Alignment explanation
Indices: 26547720--26548050 Score: 106
Period size: 29 Copynumber: 11.2 Consensus size: 30
26547710 CGCAGGGGGC
*
26547720 AAAATGGTAATTTCAGTGAAATCAAGGTTA
1 AAAATGGTAATTTTAGTGAAATCAAGGTTA
* * *
26547750 AAAATGG-AGTTTTAG-AAAATTCAAGGGT-
1 AAAATGGTAATTTTAGTGAAA-TCAAGGTTA
* * * *
26547778 AAAATAGTAATTTTGGTGAAATCGAGGTCA
1 AAAATGGTAATTTTAGTGAAATCAAGGTTA
* * * *
26547808 AAAATAG-AATTTT-G-GAAAGTTTAGGGGT-
1 AAAATGGTAATTTTAGTGAAA--TCAAGGTTA
* * * *
26547836 AAGATGGTAATTTTTGGTAAAATCGAGGTTA
1 AAAATGGTAA-TTTTAGTGAAATCAAGGTTA
* * *
26547867 AAAATAG-AATTTT-G-GAAAGTTTAAGGGGT-
1 AAAATGGTAATTTTAGTGAAA--TCAA-GGTTA
* * **
26547896 AAGATGGTAATTTTGGGTGAAATCGGGGTTA
1 AAAATGGTAATTTT-AGTGAAATCAAGGTTA
* * *
26547927 AAAATGG-AA-TCTAG-GAAAATTTAAGGGT-
1 AAAATGGTAATTTTAGTG-AAA-TCAAGGTTA
**
26547955 AAAATGGTAATTTTAGGTGAAATCGGGGTTA
1 AAAATGGTAATTTTA-GTGAAATCAAGGTTA
* * * *
26547986 AAAATGG-AA-TTTA-AGAAAGTTTAGGGGT-
1 AAAATGGTAATTTTAGTGAAA--TCAAGGTTA
*
26548014 AAAATGGTAATTTTAGGTGAAATCAGGGTTA
1 AAAATGGTAATTTTA-GTGAAATCAAGGTTA
26548045 AAAATG
1 AAAATG
26548051 AATTTAGAAA
Statistics
Matches: 214, Mismatches: 54, Indels: 65
0.64 0.16 0.20
Matches are distributed among these distances:
27 12 0.06
28 34 0.16
29 65 0.30
30 60 0.28
31 30 0.14
32 9 0.04
33 4 0.02
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.31
Consensus pattern (30 bp):
AAAATGGTAATTTTAGTGAAATCAAGGTTA
Found at i:26547789 original size:58 final size:57
Alignment explanation
Indices: 26547715--26548143 Score: 457
Period size: 59 Copynumber: 7.3 Consensus size: 57
26547705 GGTCTCGCAG
* * ** * *
26547715 GGGGCAAAATGGTAATTTCAGTGAAATCAAGGTTAAAAATGGAGTTTTAGAAAATTCA
1 GGGGTAAAATGGTAATTTTAGTGAAATCGGGGTTAAAAATGGA-TTTTAGAAAGTTTA
* * * * * * *
26547773 AGGGTAAAATAGTAATTTTGGTGAAATCGAGGTCAAAAATAGAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTAGTGAAATCGGGGTTAAAAAT-GGATTTTAGAAAGTTTA
* * * * * *
26547831 GGGGTAAGATGGTAATTTTTGGTAAAATCGAGGTTAAAAATAGAATTTTGGAAAGTTTAA
1 GGGGTAAAATGGTAA-TTTTAGTGAAATCGGGGTTAAAAAT-GGATTTTAGAAAGTTT-A
* * * * *
26547891 GGGGTAAGATGGTAATTTTGGGTGAAATCGGGGTTAAAAATGGAATCTAGGAAAATTTA
1 GGGGTAAAATGGTAATTTT-AGTGAAATCGGGGTTAAAAATGGATTTTA-GAAAGTTTA
* *
26547950 AGGGTAAAATGGTAATTTTAGGTGAAATCGGGGTTAAAAATGGAATTTAAGAAAGTTTA
1 GGGGTAAAATGGTAATTTTA-GTGAAATCGGGGTTAAAAATGG-ATTTTAGAAAGTTTA
* *
26548009 GGGGTAAAATGGTAATTTTAGGTGAAATCAGGGTTAAAAAT-GAATTTAGAAAAGTTTA
1 GGGGTAAAATGGTAATTTTA-GTGAAATCGGGGTTAAAAATGGATTTTAG-AAAGTTTA
* *
26548067 GGGGTAAAATGGTAATTTTAGGTAAAATCGGGGTT-AAAATGGAATTTAGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTA-GTGAAATCGGGGTTAAAAATGGATTTTA-GAAAGTTTA
26548125 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
26548144 TAAAAGTTTC
Statistics
Matches: 325, Mismatches: 36, Indels: 20
0.85 0.09 0.05
Matches are distributed among these distances:
57 10 0.03
58 132 0.41
59 138 0.42
60 45 0.14
ACGTcount: A:0.39, C:0.03, G:0.27, T:0.31
Consensus pattern (57 bp):
GGGGTAAAATGGTAATTTTAGTGAAATCGGGGTTAAAAATGGATTTTAGAAAGTTTA
Found at i:26547870 original size:59 final size:59
Alignment explanation
Indices: 26547715--26548143 Score: 546
Period size: 58 Copynumber: 7.3 Consensus size: 59
26547705 GGTCTCGCAG
* * * * * *
26547715 GGGGCAAAATGGTAATTTCA-GTGAAATCAAGGTTAAAAATGGAGTTTTA-GAAAATTCA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGA-ATTTAGGAAAGTTTA
* * * * *
26547773 AGGGTAAAATAGTAATTTT-GGTGAAATCGAGGTCAAAAATAGAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTA
* * * * *
26547831 GGGGTAAGATGGTAATTTTTGGTAAAATCGAGGTTAAAAATAGAATTTTGGAAAGTTTAA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTT-A
* * * * *
26547891 GGGGTAAGATGGTAATTTTGGGTGAAATCGGGGTTAAAAATGGAATCTAGGAAAATTTA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTA
* * *
26547950 AGGGTAAAATGGTAATTTTAGGTGAAATCGGGGTTAAAAATGGAATTTAAGAAAGTTTA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTA
*
26548009 GGGGTAAAATGGTAATTTTAGGTGAAATC-AGGGTTAAAAAT-GAATTTAGAAAAGTTTA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGA-GGTTAAAAATGGAATTTAGGAAAGTTTA
* *
26548067 GGGGTAAAATGGTAATTTTAGGTAAAATCGGGGTT-AAAATGGAATTTAGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTA
26548125 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
26548144 TAAAAGTTTC
Statistics
Matches: 328, Mismatches: 36, Indels: 14
0.87 0.10 0.04
Matches are distributed among these distances:
57 8 0.02
58 140 0.43
59 128 0.39
60 52 0.16
ACGTcount: A:0.39, C:0.03, G:0.27, T:0.31
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTAGGTGAAATCGAGGTTAAAAATGGAATTTAGGAAAGTTTA
Found at i:26548054 original size:29 final size:30
Alignment explanation
Indices: 26547899--26548113 Score: 116
Period size: 30 Copynumber: 7.3 Consensus size: 30
26547889 AAGGGGTAAG
* *
26547899 ATGGTAATTTTGGGTGAAATCGGGGTTAAAA
1 ATGG-AATTTTAGGTGAAATCAGGGTTAAAA
* * *
26547930 ATGGAA-TCTAGG-AAAATTTAAGGG-T-AAA
1 ATGGAATTTTAGGTGAAA--TCAGGGTTAAAA
*
26547958 ATGGTAATTTTAGGTGAAATCGGGGTTAAAA
1 ATGG-AATTTTAGGTGAAATCAGGGTTAAAA
* * *
26547989 ATGGAA-TTTA--AGAAAGTTTAGGGGT-AAA
1 ATGGAATTTTAGGTGAAA--TCAGGGTTAAAA
26548017 ATGGTAATTTTAGGTGAAATCAGGGTTAAAA
1 ATGG-AATTTTAGGTGAAATCAGGGTTAAAA
* * *
26548048 AT-GAA-TTTA-G-AAAAGTTTAGGGGT-AAA
1 ATGGAATTTTAGGTGAAA--TCAGGGTTAAAA
* *
26548075 ATGGTAATTTTAGGTAAAATCGGGGTT-AAA
1 ATGG-AATTTTAGGTGAAATCAGGGTTAAAA
26548105 ATGGAATTT
1 ATGGAATTT
26548114 AGGAAAGTTT
Statistics
Matches: 141, Mismatches: 22, Indels: 44
0.68 0.11 0.21
Matches are distributed among these distances:
26 3 0.02
27 10 0.07
28 28 0.20
29 31 0.22
30 41 0.29
31 20 0.14
32 8 0.06
ACGTcount: A:0.39, C:0.02, G:0.27, T:0.31
Consensus pattern (30 bp):
ATGGAATTTTAGGTGAAATCAGGGTTAAAA
Found at i:26548104 original size:236 final size:233
Alignment explanation
Indices: 26547720--26548143 Score: 627
Period size: 236 Copynumber: 1.8 Consensus size: 233
26547710 CGCAGGGGGC
* *
26547720 AAAATGGTAATTTCAGTGAAATCAAGGTTAAAAATGGAGTTTTAGAAAATTCAAGGGTAAAATAG
1 AAAATGGTAATTTCAGTGAAATCAAGGTTAAAAATGGAATTTAAGAAAATTCAAGGGTAAAATAG
* * *
26547785 TAATTTTGGTGAAATCGAGGTCAAAAATAGAATTTTGGAAAGTTTAGGGGTAAGATGGTAATTTT
66 TAATTTTGGTGAAATCGAGGTCAAAAATAGAATTTAGAAAAGTTTAGGGGTAAAATGGTAATTTT
* * *
26547850 TGGTAAAATCGAGGTTAAAAATAGAATTTTGGAAAGTTTAAGGGGTAAGATGGTAATTTTGGGTG
131 AGGTAAAATCGAGGTT-AAAATAGAATTTAGGAAAGTTT-AGGGGTAAAATGGTAATTTTGGGTG
26547915 AAATCGGGGTTAAAAATGGAATCTAGGAAAATTTAAGGGT
194 AAATCGGGGTTAAAAATGGAATCTAGGAAAATTTAAGGGT
* ** * * * *
26547955 AAAATGGTAATTTTAGGTGAAATCGGGGTTAAAAATGGAATTTAAGAAAGTTTAGGGGTAAAATG
1 AAAATGGTAATTTCA-GTGAAATCAAGGTTAAAAATGGAATTTAAGAAAATTCAAGGGTAAAATA
*
26548020 GTAATTTTAGGTGAAATC-AGGGTTAAAAAT-GAATTTAGAAAAGTTTAGGGGTAAAATGGTAAT
65 GTAATTTT-GGTGAAATCGA-GGTCAAAAATAGAATTTAGAAAAGTTTAGGGGTAAAATGGTAAT
* *
26548083 TTTAGGTAAAATCGGGGTTAAAATGGAATTTAGGAAAGTTTAGGGGTAAAATGGTAATTTT
128 TTTAGGTAAAATCGAGGTTAAAATAGAATTTAGGAAAGTTTAGGGGTAAAATGGTAATTTT
26548144 TAAAAGTTTC
Statistics
Matches: 168, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
234 19 0.11
235 34 0.20
236 97 0.58
237 18 0.11
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.31
Consensus pattern (233 bp):
AAAATGGTAATTTCAGTGAAATCAAGGTTAAAAATGGAATTTAAGAAAATTCAAGGGTAAAATAG
TAATTTTGGTGAAATCGAGGTCAAAAATAGAATTTAGAAAAGTTTAGGGGTAAAATGGTAATTTT
AGGTAAAATCGAGGTTAAAATAGAATTTAGGAAAGTTTAGGGGTAAAATGGTAATTTTGGGTGAA
ATCGGGGTTAAAAATGGAATCTAGGAAAATTTAAGGGT
Found at i:26548149 original size:29 final size:30
Alignment explanation
Indices: 26548001--26548187 Score: 119
Period size: 29 Copynumber: 6.4 Consensus size: 30
26547991 GGAATTTAAG
*
26548001 AAAGTTTAGGGGTAAAATGGTAATTTTAGGTG
1 AAAGTTTAGGGGTAAAATGGTAATTTT--GTA
* * *
26548033 AAA--TCAGGGTTAAAAAT-G-AATTTAG-A
1 AAAGTTTAGGGGT-AAAATGGTAATTTTGTA
26548059 AAAGTTTAGGGGTAAAATGGTAATTTTAGGTA
1 AAAGTTTAGGGGTAAAATGGTAATTTT--GTA
* * *
26548091 AAA---TCGGGGTTAAAATGG-AATTTAG-G
1 AAAGTTTAGGGG-TAAAATGGTAATTTTGTA
26548117 AAAGTTTAGGGGTAAAATGGTAATTTT-TA
1 AAAGTTTAGGGGTAAAATGGTAATTTTGTA
* * *
26548146 AAAGTTTCGGGGTCAAAA-CGTAATTTTCTA
1 AAAGTTTAGGGGT-AAAATGGTAATTTTGTA
*
26548176 AAATTTTTAGGG
1 AAA-GTTTAGGG
26548188 TCGAAACGTA
Statistics
Matches: 121, Mismatches: 17, Indels: 35
0.70 0.10 0.20
Matches are distributed among these distances:
26 6 0.05
27 7 0.06
28 15 0.12
29 50 0.41
30 24 0.20
31 12 0.10
32 7 0.06
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (30 bp):
AAAGTTTAGGGGTAAAATGGTAATTTTGTA
Found at i:26548189 original size:30 final size:29
Alignment explanation
Indices: 26548136--26548206 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
26548126 GGGTAAAATG
*
26548136 GTAATTTTTAAAAGTTTCGGGGTCAAAAC
1 GTAATTTTTAAAAGTTTCAGGGTCAAAAC
* * *
26548165 GTAATTTTCTAAAATTTTTAGGGTCGAAAC
1 GTAATTTT-TAAAAGTTTCAGGGTCAAAAC
*
26548195 GTAATTATTAAA
1 GTAATTTTTAAA
26548207 TAATTTAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
29 12 0.33
30 24 0.67
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (29 bp):
GTAATTTTTAAAAGTTTCAGGGTCAAAAC
Found at i:26550150 original size:6 final size:6
Alignment explanation
Indices: 26550103--26550160 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
26550093 TTTTGGGCTT
* * * *
26550103 TTTAAT TTTAAT TTTAAA ATT--A TTTCAAA TTTAAA -CTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA
26550149 TTTAAA TTTAAA
1 TTTAAA TTTAAA
26550161 AATGAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
4 3 0.07
5 4 0.09
6 32 0.74
7 4 0.09
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:26550168 original size:24 final size:23
Alignment explanation
Indices: 26550124--26550176 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
26550114 TTTTAAAATT
*
26550124 ATTTCAAATTTAAACTAAATTTAA
1 ATTT-AAATTTAAAATAAATTTAA
*
26550148 ATTTAAATTTAAAAATGAATTTAA
1 ATTTAAATTT-AAAATAAATTTAA
*
26550172 TTTTA
1 ATTTA
26550177 GAAATAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTTAAATTTAAAATAAATTTAA
Found at i:26550189 original size:18 final size:18
Alignment explanation
Indices: 26550145--26550190 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
26550135 AAACTAAATT
26550145 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAAA
* * *
26550163 TGAATTTAATTTTAGAAA
1 TAAATTTAAATTTAAAAA
*
26550181 TAAACTTAAA
1 TAAATTTAAA
26550191 AACCATTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:26550599 original size:76 final size:76
Alignment explanation
Indices: 26550469--26550928 Score: 749
Period size: 76 Copynumber: 6.0 Consensus size: 76
26550459 TCGAGGCTTC
* * * *
26550469 ATCTTGCTCTTACTTCAATTTTAGAGAGATAAAGACTTGCTATCCAACTTTACTTCAATTTTAAG
1 ATCTTGCTCTTACTTCAA-TTT-CAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG
26550534 AGGATAGGAAATG
64 AGGATAGGAAATG
26550547 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
26550612 GATTGGAAATG
66 GATAGGAAATG
* *
26550623 ATGTTGCTTTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
26550688 GATAGGAAATG
66 GATAGGAAATG
* * * *
26550699 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
26550764 GATAGGAAATG
66 GATAGGAAATG
* * * * *
26550775 ATCTTGCTCTTACTTCAATTTCAGAGATGAAGATTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
26550840 GATAGGAAATG
66 GATAGGAAATG
*
26550851 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGAGTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
26550916 GATAGGAAATG
66 GATAGGAAATG
26550927 AT
1 AT
26550929 GTTGGACTGA
Statistics
Matches: 362, Mismatches: 20, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
76 341 0.94
77 3 0.01
78 18 0.05
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:26564312 original size:13 final size:13
Alignment explanation
Indices: 26564296--26564322 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26564286 GCCCTTGTTT
26564296 TGGACATTGTAAA
1 TGGACATTGTAAA
26564309 TGGACATTGTAAA
1 TGGACATTGTAAA
26564322 T
1 T
26564323 AACTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (13 bp):
TGGACATTGTAAA
Found at i:26564382 original size:18 final size:17
Alignment explanation
Indices: 26564346--26564439 Score: 73
Period size: 18 Copynumber: 5.4 Consensus size: 17
26564336 GCTTTTTAAT
* *
26564346 TTTAATTTTAAAAT-TA
1 TTTAAATTTAAAATAAA
*
26564362 TTTCAAATTTAAACTAAA
1 TTT-AAATTTAAAATAAA
*
26564380 TTTAAATTTAAAAATGAA
1 TTTAAATTT-AAAATAAA
*
26564398 TTTAAATTTAAATTTAAA
1 TTTAAATTTAAA-ATAAA
* *
26564416 TTTAATTTTAGGAATAAA
1 TTTAAATTTA-AAATAAA
*
26564434 CTTAAA
1 TTTAAA
26564440 AACCATTTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
16 3 0.05
17 18 0.30
18 39 0.64
19 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:26564387 original size:6 final size:6
Alignment explanation
Indices: 26564340--26564425 Score: 70
Period size: 6 Copynumber: 14.7 Consensus size: 6
26564330 TTTTGGGCTT
* * * *
26564340 TTTAAT TTTAAT TTTAAA ATT--A TTTCAAA TTTAAA -CTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA
** * *
26564386 TTTAAA AATGAA TTTAAA TTTAAA TTTAAA TTTAAT TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA
26564426 GGAATAAACT
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
4 3 0.05
5 4 0.06
6 53 0.83
7 4 0.06
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:26571173 original size:3 final size:3
Alignment explanation
Indices: 26571165--26571201 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26571155 GATTCTATGT
26571165 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26571202 GGAAAAAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26571972 original size:24 final size:24
Alignment explanation
Indices: 26571944--26572031 Score: 97
Period size: 24 Copynumber: 3.7 Consensus size: 24
26571934 GCTGACGAGT
*
26571944 GTAAACGTATGCAAGCTAACAAGC
1 GTAAACGTATACAAGCTAACAAGC
* * *
26571968 ATAAACGTATATAAGCTGACAAGC
1 GTAAACGTATACAAGCTAACAAGC
* * *
26571992 GTAAACGTATATAAGTTAACGAGC
1 GTAAACGTATACAAGCTAACAAGC
*
26572016 GT-AACGTATGCAAGCT
1 GTAAACGTATACAAGCT
26572032 GATGAGTGTG
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
23 11 0.21
24 42 0.79
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (24 bp):
GTAAACGTATACAAGCTAACAAGC
Found at i:26582093 original size:18 final size:18
Alignment explanation
Indices: 26582070--26582114 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
26582060 TAAATGCATC
26582070 AAATATAAATATTTATAA
1 AAATATAAATATTTATAA
26582088 AAATATAAATATTTATAA
1 AAATATAAATATTTATAA
26582106 AAATATAAA
1 AAATATAAA
26582115 AAATGTGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAAATATTTATAA
Found at i:26582917 original size:23 final size:19
Alignment explanation
Indices: 26582887--26582939 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 19
26582877 CTTTTTATAC
26582887 TTTTAAATTTTTTGAGTAATTT
1 TTTTAAATTTTTT--G-AATTT
*
26582909 TTTATAAATCTTTTGAATTT
1 TTT-TAAATTTTTTGAATTT
26582929 TTTTAAATTTT
1 TTTTAAATTTT
26582940 AAAAACTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 7 0.25
20 8 0.29
21 1 0.04
22 3 0.11
23 9 0.32
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (19 bp):
TTTTAAATTTTTTGAATTT
Found at i:26593371 original size:31 final size:29
Alignment explanation
Indices: 26593316--26593386 Score: 97
Period size: 31 Copynumber: 2.4 Consensus size: 29
26593306 AATGTTTGAA
*
26593316 TTAATTTTAAATTCATTTTTAAATTTATC
1 TTAAATTTAAATTCATTTTTAAATTTATC
* *
26593345 TTAAATTTAAATTTACTTATTTAAATTTATT
1 TTAAATTTAAATTCA-TT-TTTAAATTTATC
26593376 TTAAATTTAAA
1 TTAAATTTAAA
26593387 CTTAATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 13 0.35
30 2 0.05
31 22 0.59
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.56
Consensus pattern (29 bp):
TTAAATTTAAATTCATTTTTAAATTTATC
Found at i:26593383 original size:11 final size:11
Alignment explanation
Indices: 26593314--26593384 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
26593304 TTAATGTTTG
*
26593314 AATTAATTTTA
1 AATTTATTTTA
*
26593325 AATTCATTTTTA
1 AATTTA-TTTTA
*
26593337 AATTTATCTTA
1 AATTTATTTTA
*
26593348 AATTTAAATTT-
1 AATTT-ATTTTA
*
26593359 -ACTTA-TTTA
1 AATTTATTTTA
26593368 AATTTATTTTA
1 AATTTATTTTA
26593379 AATTTA
1 AATTTA
26593385 AACTTAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
8 3 0.06
9 1 0.02
10 7 0.15
11 24 0.50
12 13 0.27
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTATTTTA
Found at i:26593395 original size:17 final size:17
Alignment explanation
Indices: 26593363--26593397 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26593353 AAATTTACTT
* *
26593363 ATTTAAATTTATTTTAA
1 ATTTAAACTTAATTTAA
26593380 ATTTAAACTTAATTTAA
1 ATTTAAACTTAATTTAA
26593397 A
1 A
26593398 ATAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAAACTTAATTTAA
Found at i:26595145 original size:30 final size:30
Alignment explanation
Indices: 26595104--26595223 Score: 170
Period size: 30 Copynumber: 4.0 Consensus size: 30
26595094 CACTAAATTG
**
26595104 TCCAGAAATTACATTTTGACCCTGAAACTTT
1 TCCA-AAATTACATTTTGACCCCAAAACTTT
*
26595135 TCCAAAATTACATTTTAACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
* *
26595165 TCTAAAATTACATTTTGACCCTAAAAC-TT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
26595194 TCAAAAATTACATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
26595224 CCTAAATCCC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
29 27 0.34
30 49 0.61
31 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (30 bp):
TCCAAAATTACATTTTGACCCCAAAACTTT
Found at i:26595222 original size:59 final size:60
Alignment explanation
Indices: 26595109--26595229 Score: 199
Period size: 59 Copynumber: 2.0 Consensus size: 60
26595099 AATTGTCCAG
* * *
26595109 AAATTACATTTTGACCCTGAAACTTTTCCAAAATTACATTTTAACCCCAAAACTTTTCTA
1 AAATTACATTTTGACCCTAAAACTTTTCAAAAATTACATTTTAACCCCAAAACTTTCCTA
*
26595169 AAATTACATTTTGACCCTAAAAC-TTTCAAAAATTACATTTTGACCCCAAAACTTTCCTA
1 AAATTACATTTTGACCCTAAAACTTTTCAAAAATTACATTTTAACCCCAAAACTTTCCTA
26595228 AA
1 AA
26595230 TCCCATTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 35 0.61
60 22 0.39
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.35
Consensus pattern (60 bp):
AAATTACATTTTGACCCTAAAACTTTTCAAAAATTACATTTTAACCCCAAAACTTTCCTA
Found at i:26595258 original size:59 final size:59
Alignment explanation
Indices: 26595227--26595449 Score: 351
Period size: 59 Copynumber: 3.8 Consensus size: 59
26595217 AAACTTTCCT
* * *
26595227 AAATCCCATTTTTAACCCTGATTTCACCAAAATTTACCATTTTACCCCCGAATCTTTTA
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
* * *
26595286 AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCCGAAGCTTCTA
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
*
26595345 AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCCGAATCTTTTA
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
* *
26595404 AAATTCCATTTTT-ACCTCGATTTCACC-AAAATTACCATTTTGCCCC
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCC
26595450 TGGGTATCCA
Statistics
Matches: 154, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
57 18 0.12
58 13 0.08
59 123 0.80
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (59 bp):
AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
Found at i:26595299 original size:29 final size:29
Alignment explanation
Indices: 26595266--26595419 Score: 141
Period size: 29 Copynumber: 5.2 Consensus size: 29
26595256 AAATTTACCA
*
26595266 TTTTACCCCCGAATCTTTTAAAATTCCAT
1 TTTTACCCCCGAATCTTCTAAAATTCCAT
* * ** *
26595295 TTTTAACCCCGATTTCACCGAAAATTACCA-
1 TTTTACCCCCGA-ATCTTCTAAAATT-CCAT
*
26595325 TTTTACCCCCGAAGCTTCTAAAATTCCAT
1 TTTTACCCCCGAATCTTCTAAAATTCCAT
* * ** *
26595354 TTTTAACCCCGATTTCACCGAAAATTACCA-
1 TTTTACCCCCGA-ATCTTCTAAAATT-CCAT
*
26595384 TTTTACCCCCGAATCTTTTAAAATTCCAT
1 TTTTACCCCCGAATCTTCTAAAATTCCAT
26595413 TTTTACC
1 TTTTACC
26595420 TCGATTTCAC
Statistics
Matches: 95, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
28 6 0.06
29 45 0.47
30 38 0.40
31 6 0.06
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.36
Consensus pattern (29 bp):
TTTTACCCCCGAATCTTCTAAAATTCCAT
Found at i:26595441 original size:29 final size:28
Alignment explanation
Indices: 26595227--26595444 Score: 121
Period size: 29 Copynumber: 7.4 Consensus size: 28
26595217 AAACTTTCCT
* *
26595227 AAATCCCATTTTTAACCCTGATTTCACCA
1 AAATTCCATTTTT-ACCCCGATTTCACCA
**
26595256 AAATTTACCA-TTTTACCCCCGAATCTT--TTA
1 AAA-TT-CCATTTTTA-CCCCG-AT-TTCACCA
26595286 AAATTCCATTTTTAACCCCGATTTCACCGA
1 AAATTCCATTTTT-ACCCCGATTTCACC-A
* *
26595316 AAATTACCA-TTTTACCCCCGAAGCTT--CTA
1 AAATT-CCATTTTTA-CCCCG-A-TTTCACCA
26595345 AAATTCCATTTTTAACCCCGATTTCACCGA
1 AAATTCCATTTTT-ACCCCGATTTCACC-A
**
26595375 AAATTACCA-TTTTACCCCCGAATCTT--TTA
1 AAATT-CCATTTTTA-CCCCG-AT-TTCACCA
*
26595404 AAATTCCATTTTTACCTCGATTTCACCA
1 AAATTCCATTTTTACCCCGATTTCACCA
26595432 AAATTACCATTTT
1 AAATT-CCATTTT
26595445 GCCCCTGGGT
Statistics
Matches: 147, Mismatches: 15, Indels: 54
0.68 0.07 0.25
Matches are distributed among these distances:
26 2 0.01
27 6 0.04
28 22 0.15
29 51 0.35
30 46 0.31
31 14 0.10
32 6 0.04
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.36
Consensus pattern (28 bp):
AAATTCCATTTTTACCCCGATTTCACCA
Found at i:26595486 original size:58 final size:58
Alignment explanation
Indices: 26595226--26595486 Score: 248
Period size: 59 Copynumber: 4.5 Consensus size: 58
26595216 AAAACTTTCC
* * * * *
26595226 TAAATCCCATTTTTAACCCTGATTTCACC-AAAATTTACCATTTTACCCC-CGAATCTTT
1 TAAATTCCATTTTTAACCCCGATTTCACCGAAAA-TTACCATTTTACCCCGGGTATC-TA
*
26595284 TAAAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCCGAAGCT-TCTA
1 T-AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTA-CCCCG--GGTATCTA
* * *
26595345 -AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCC-CGAATCTTT
1 TAAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCGGGTATC-TA
* * *
26595402 TAAAATTCCATTTTT-ACCTCGATTTCACC-AAAATTACCATTTTGCCCCTGGGTATCCA
1 T-AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCC-GGGTATCTA
* * * *
26595460 TAAGTCCCGTTTTTCACCCCGATTTCA
1 TAAATTCCATTTTTAACCCCGATTTCA
26595487 TCATTTATCA
Statistics
Matches: 170, Mismatches: 20, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
56 2 0.01
57 29 0.17
58 30 0.18
59 98 0.58
60 8 0.05
61 1 0.01
62 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.36
Consensus pattern (58 bp):
TAAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCGGGTATCTA
Found at i:26596912 original size:35 final size:35
Alignment explanation
Indices: 26596865--26596955 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 35
26596855 AGTTGGTAAG
* *
26596865 TATGGAAAATTAAGAGGAAATTAAAGAGGCACTCA
1 TATGGAAAATTAAGAGGAAATTAAAAAGGCACCCA
* *
26596900 TATGAAAAATTAAGGGGAAATTAAAAAGGCACCCA
1 TATGGAAAATTAAGAGGAAATTAAAAAGGCACCCA
26596935 TATGGAAAA--AAGA-GAAATTAA
1 TATGGAAAATTAAGAGGAAATTAA
26596956 GGGGAAACTA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
32 8 0.16
33 3 0.06
35 39 0.78
ACGTcount: A:0.53, C:0.08, G:0.21, T:0.19
Consensus pattern (35 bp):
TATGGAAAATTAAGAGGAAATTAAAAAGGCACCCA
Found at i:26597142 original size:12 final size:12
Alignment explanation
Indices: 26597125--26597154 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
26597115 TCATATGAAA
26597125 AAAGAGAAAATT
1 AAAGAGAAAATT
26597137 AAAGAG-AAATT
1 AAAGAGAAAATT
26597148 AAAGAGA
1 AAAGAGA
26597155 CACTCGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (12 bp):
AAAGAGAAAATT
Found at i:26599464 original size:21 final size:23
Alignment explanation
Indices: 26599438--26599487 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
26599428 ATTTAGTTTT
*
26599438 ATTTTTTTC-ATTTAATTA-TTA
1 ATTTTTTTCAATTGAATTATTTA
26599459 ATTTTTTTCAATTGAATTATTTA
1 ATTTTTTTCAATTGAATTATTTA
26599482 ATTTTT
1 ATTTTT
26599488 CGAAATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (23 bp):
ATTTTTTTCAATTGAATTATTTA
Found at i:26599488 original size:21 final size:20
Alignment explanation
Indices: 26599440--26599487 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
26599430 TTAGTTTTAT
*
26599440 TTTTTTCATTTAATTATTAA
1 TTTTTTCATTGAATTATTAA
26599460 TTTTTTTCAATTGAATTATTTAA
1 -TTTTTTC-ATTGAATTA-TTAA
26599483 TTTTT
1 TTTTT
26599488 CGAAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 13 0.54
23 4 0.17
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTTTCATTGAATTATTAA
Found at i:26599494 original size:23 final size:22
Alignment explanation
Indices: 26599449--26599502 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
26599439 TTTTTTTCAT
***
26599449 TTAATTA-TTAATTTTTTTCAA
1 TTAATTATTTAATTTTTCGAAA
26599470 TTGAATTATTTAATTTTTCGAAA
1 TT-AATTATTTAATTTTTCGAAA
*
26599493 TTAAATATTT
1 TTAATTATTT
26599503 TAATCACTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.07
22 12 0.44
23 13 0.48
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (22 bp):
TTAATTATTTAATTTTTCGAAA
Found at i:26605468 original size:23 final size:23
Alignment explanation
Indices: 26605394--26605607 Score: 142
Period size: 23 Copynumber: 9.5 Consensus size: 23
26605384 TAAGCGGAAC
* *
26605394 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
26605416 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
26605438 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
26605464 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
26605484 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
26605503 AATCAGAGAGCACACGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * * *
26605526 AATCGGAGAGCACATACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
26605549 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
26605574 AAACAGAGAGCACACATAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
26605597 AATCAAAGAGC
1 AAACAGAGAGC
26605608 GCGCTAGTGT
Statistics
Matches: 149, Mismatches: 27, Indels: 31
0.72 0.13 0.15
Matches are distributed among these distances:
16 10 0.07
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.01
22 18 0.12
23 76 0.51
24 2 0.01
25 28 0.19
26 8 0.05
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.13
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:26605502 original size:39 final size:39
Alignment explanation
Indices: 26605448--26605522 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
26605438 GGGCAACAGA
*
26605448 GAGCACACAAAGTGCTAAACAGAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
* *
26605487 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGT
26605523 GCTAATCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
Found at i:26605583 original size:48 final size:46
Alignment explanation
Indices: 26605487--26605607 Score: 145
Period size: 48 Copynumber: 2.6 Consensus size: 46
26605477 ACAAAGTACT
* *
26605487 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGTGCTAATCGGA
1 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGTGCTAAACAGA
* * *
26605533 GAGCACATACAGTGCTAATAACAGAGAGCACGA-GACGTGCTAAACAGA
1 GAGCACACAAAGTGCTAAT--CAGAGAGCAC-ACGAAGTGCTAAACAGA
* *
26605581 GAGCACACATAGTGCTAATCAAAGAGC
1 GAGCACACAAAGTGCTAATCAGAGAGC
26605608 GCGCTAGTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 24 0.38
48 39 0.61
49 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.13
Consensus pattern (46 bp):
GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGTGCTAAACAGA
Found at i:26608791 original size:18 final size:18
Alignment explanation
Indices: 26608770--26608807 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26608760 TAAATTTTTG
*
26608770 AATTCGAAT-AACTCGAAT
1 AATTCAAATAAAC-CGAAT
26608788 AATTCAAATAAACCGAAT
1 AATTCAAATAAACCGAAT
26608806 AA
1 AA
26608808 AATTATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:26612360 original size:19 final size:20
Alignment explanation
Indices: 26612338--26612380 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
26612328 TAAATTTTAG
*
26612338 AATTTTTAAAA-TATTTTGA
1 AATTTTGAAAATTATTTTGA
26612357 AATTTTGAAAATTATTTTGA
1 AATTTTGAAAATTATTTTGA
26612377 AATT
1 AATT
26612381 ATTTTGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (20 bp):
AATTTTGAAAATTATTTTGA
Found at i:26612381 original size:11 final size:11
Alignment explanation
Indices: 26612358--26612391 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26612348 ATATTTTGAA
26612358 ATTTTGAAAATT
1 ATTTTG-AAATT
26612370 ATTTTGAAATT
1 ATTTTGAAATT
*
26612381 ATTTTGTAATT
1 ATTTTGAAATT
26612392 TTTGTTGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (11 bp):
ATTTTGAAATT
Found at i:26613279 original size:19 final size:19
Alignment explanation
Indices: 26613255--26613294 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26613245 ATAAATTAAG
26613255 TTGCTCACACAAGCTGGCA
1 TTGCTCACACAAGCTGGCA
* *
26613274 TTGCTCATACAAGTTGGCA
1 TTGCTCACACAAGCTGGCA
26613293 TT
1 TT
26613295 ACATCATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (19 bp):
TTGCTCACACAAGCTGGCA
Found at i:26614112 original size:20 final size:20
Alignment explanation
Indices: 26614087--26614140 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
26614077 CTACAGTGAG
* *
26614087 ACTTCTACCGGTATAACCCC
1 ACTTCTACCGATACAACCCC
* *
26614107 ACTTCTACTGATACAACTCC
1 ACTTCTACCGATACAACCCC
26614127 ACTTCTACCGATAC
1 ACTTCTACCGATAC
26614141 CTTGAAGACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.37, G:0.07, T:0.28
Consensus pattern (20 bp):
ACTTCTACCGATACAACCCC
Found at i:26617196 original size:20 final size:20
Alignment explanation
Indices: 26617171--26617224 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
26617161 CTCCAGTGAG
* *
26617171 ACTTCTATCGATAGAACTCC
1 ACTTCTACCGATACAACTCC
26617191 ACTTCTACCGATACAACTCC
1 ACTTCTACCGATACAACTCC
*
26617211 ACTTTTACCGATAC
1 ACTTCTACCGATAC
26617225 CTTGAAGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (20 bp):
ACTTCTACCGATACAACTCC
Found at i:26617993 original size:6 final size:6
Alignment explanation
Indices: 26617973--26618035 Score: 78
Period size: 6 Copynumber: 11.0 Consensus size: 6
26617963 ACCAAACCAT
* *
26617973 TTTAAA TTT-AT TTTAAA TTTAAA TTTAAA TTT-AA TTTAAA TTTAGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
26618019 TTT-AA TCTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
26618036 ATTATTATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 12 0.25
6 36 0.75
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:26617995 original size:17 final size:17
Alignment explanation
Indices: 26617973--26618035 Score: 83
Period size: 17 Copynumber: 3.7 Consensus size: 17
26617963 ACCAAACCAT
*
26617973 TTTAAATTT-ATTTTAAA
1 TTTAAATTTAAATTT-AA
26617990 TTTAAATTTAAATTTAA
1 TTTAAATTTAAATTTAA
*
26618007 TTTAAATTTAGATTTAA
1 TTTAAATTTAAATTTAA
*
26618024 TCTAAATTTAAA
1 TTTAAATTTAAA
26618036 ATTATTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 37 0.90
18 4 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTAAATTTAAATTTAA
Found at i:26618002 original size:23 final size:23
Alignment explanation
Indices: 26617973--26618023 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26617963 ACCAAACCAT
*
26617973 TTTAAATTTATTTTAAATTTAAA
1 TTTAAATTTAATTTAAATTTAAA
*
26617996 TTTAAATTTAATTTAAATTTAGA
1 TTTAAATTTAATTTAAATTTAAA
26618019 TTTAA
1 TTTAA
26618024 TCTAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTAAATTTAATTTAAATTTAAA
Found at i:26618031 original size:23 final size:23
Alignment explanation
Indices: 26617974--26618035 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
26617964 CCAAACCATT
* *
26617974 TTAAATTTATTTTAAATTTAAAT
1 TTAAATTAAATTTAAATTTAAAT
* *
26617997 TTAAATTTAATTTAAATTTAGAT
1 TTAAATTAAATTTAAATTTAAAT
26618020 TT-AATCTAAATTTAAA
1 TTAAAT-TAAATTTAAA
26618036 ATTATTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 3 0.09
23 32 0.91
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAAATTAAATTTAAATTTAAAT
Found at i:26618034 original size:11 final size:11
Alignment explanation
Indices: 26617973--26618023 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
26617963 ACCAAACCAT
*
26617973 TTTAAATTTAT
1 TTTAAATTTAA
26617984 TTTAAATTTAAA
1 TTTAAATTT-AA
26617996 TTTAAATTTAA
1 TTTAAATTTAA
26618007 TTTAAATTTAGA
1 TTTAAATTTA-A
26618019 TTTAA
1 TTTAA
26618024 TCTAAATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
11 21 0.57
12 16 0.43
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:26618046 original size:17 final size:16
Alignment explanation
Indices: 26617989--26618051 Score: 63
Period size: 17 Copynumber: 3.8 Consensus size: 16
26617979 TTTATTTTAA
26617989 ATTTAAATTTAAATTT
1 ATTTAAATTTAAATTT
*
26618005 AATTTAAATTTAGATTT
1 -ATTTAAATTTAAATTT
* *
26618022 AATCTAAATTTAAAATT
1 -ATTTAAATTTAAATTT
*
26618039 ATTATAAACTTAA
1 ATT-TAAATTTAA
26618052 TAAAATATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
16 2 0.05
17 37 0.95
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (16 bp):
ATTTAAATTTAAATTT
Found at i:26620019 original size:29 final size:29
Alignment explanation
Indices: 26619913--26620022 Score: 141
Period size: 30 Copynumber: 3.7 Consensus size: 29
26619903 CCCTGAAAGT
* * *
26619913 CCCTAAACTATCCAAAAATGATATTTTGA
1 CCCTAAACTTTCTAAAAATTATATTTTGA
26619942 CCCTAAAACTTTCTAAAAATTATATTTTGA
1 CCCT-AAACTTTCTAAAAATTATATTTTGA
* *
26619972 CCCCCAAACTTT-TCCAAAATTATATTTTGA
1 -CCCTAAACTTTCT-AAAAATTATATTTTGA
26620002 CCCTAAACTTTCTAAAAATTA
1 CCCTAAACTTTCTAAAAATTA
26620023 CATCTTCACC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
29 22 0.31
30 45 0.64
31 3 0.04
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTTCTAAAAATTATATTTTGA
Found at i:26620033 original size:29 final size:30
Alignment explanation
Indices: 26619913--26620042 Score: 140
Period size: 30 Copynumber: 4.4 Consensus size: 30
26619903 CCCTGAAAGT
* * *
26619913 CCCTAAACTATCCAAAAATGATATTTTGA-
1 CCCTAAACTTTCTAAAAATTATATTTTGAC
26619942 CCCTAAAACTTTCTAAAAATTATATTTTGAC
1 CCCT-AAACTTTCTAAAAATTATATTTTGAC
* *
26619973 CCCCAAACTTT-TCCAAAATTATATTTTGA-
1 CCCTAAACTTTCT-AAAAATTATATTTTGAC
* * *
26620002 CCCTAAACTTTCTAAAAATTACATCTTCAC
1 CCCTAAACTTTCTAAAAATTATATTTTGAC
*
26620032 CCCAAAACTTT
1 CCCTAAACTTT
26620043 TCCATAATTC
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
29 27 0.32
30 55 0.65
31 3 0.04
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (30 bp):
CCCTAAACTTTCTAAAAATTATATTTTGAC
Found at i:26620090 original size:30 final size:30
Alignment explanation
Indices: 26620048--26620140 Score: 77
Period size: 30 Copynumber: 3.1 Consensus size: 30
26620038 ACTTTTCCAT
*
26620048 AATTCCACTTTTAAACCTAATTTTACCAAA
1 AATTCCACTTTTAACCCTAATTTTACCAAA
* *
26620078 AATTACCA-TTTTACTCCCAAACTTTT--C-AA
1 AATT-CCACTTTTA-ACCCTAA-TTTTACCAAA
* * *
26620107 AATTCCATTTTTGACCCTGATTTTACCAAA
1 AATTCCACTTTTAACCCTAATTTTACCAAA
26620137 AATT
1 AATT
26620141 ATCATTTTAC
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
27 4 0.08
28 7 0.14
29 11 0.22
30 16 0.33
31 7 0.14
32 4 0.08
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.39
Consensus pattern (30 bp):
AATTCCACTTTTAACCCTAATTTTACCAAA
Found at i:26620136 original size:59 final size:59
Alignment explanation
Indices: 26619936--26620235 Score: 249
Period size: 59 Copynumber: 5.1 Consensus size: 59
26619926 AAAAATGATA
* * *
26619936 TTTTGACCCTAAAACTTT-CTAAAAATTATATTTTGACCCCCAAACTTTTCCAAAATT--AT
1 TTTTGACCCT-AAATTTTACCAAAAATTACATTTT-ACCCCCAAACTTTT-CAAAATTCCAT
* * * * * *
26619995 ATTTTGACCCTAAACTTT-CTAAAAATTACATCTTCACCCCAAAACTTTTCCATAATTCCAC
1 -TTTTGACCCTAAATTTTACCAAAAATTACAT-TTTACCCCCAAACTTTT-CAAAATTCCAT
* * *
26620056 TTTTAAACCT-AATTTTACCAAAAATTACCATTTTACTCCCAAACTTTTCAAAATTCCAT
1 TTTTGACCCTAAATTTTACCAAAAATTA-CATTTTACCCCCAAACTTTTCAAAATTCCAT
* * * *
26620115 TTTTGACCCT-GATTTTACCAAAAATTATCATTTTACCCCCGAAC-TTTCCAAATTTCAT
1 TTTTGACCCTAAATTTTACCAAAAATTA-CATTTTACCCCCAAACTTTTCAAAATTCCAT
** * * *
26620173 TTTTGA-CCTCGA-TTTACTAAAAATTACCATTTTACCCCCCGAACTTTCCAAAATTACCAT
1 TTTTGACCCTAAATTTTACCAAAAATTA-CATTTTA-CCCCCAAACTTTTCAAAATT-CCAT
26620233 TTT
1 TTT
26620236 ACCCTCGAAC
Statistics
Matches: 204, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
57 23 0.11
58 29 0.14
59 99 0.49
60 49 0.24
61 4 0.02
ACGTcount: A:0.33, C:0.26, G:0.03, T:0.38
Consensus pattern (59 bp):
TTTTGACCCTAAATTTTACCAAAAATTACATTTTACCCCCAAACTTTTCAAAATTCCAT
Found at i:26620166 original size:30 final size:29
Alignment explanation
Indices: 26620076--26620249 Score: 121
Period size: 30 Copynumber: 6.0 Consensus size: 29
26620066 AATTTTACCA
* * *
26620076 AAAATTACCATTTTACTCCCAAACTTTTC
1 AAAATTACCATTTTACCCCCGAACTTTCC
* *
26620105 AAAATT-CCATTTTTGA-CCCTG-ATTTTACC
1 AAAATTACCA-TTTT-ACCCCCGAACTTT-CC
*
26620134 AAAAATTATCATTTTACCCCCGAACTTTCC
1 -AAAATTACCATTTTACCCCCGAACTTTCC
* * *
26620164 -AAATT-TCATTTTTGA-CCTCG-A-TTTACTA
1 AAAATTACCA-TTTT-ACCCCCGAACTTT-C-C
26620192 AAAATTACCATTTTACCCCCCGAACTTTCC
1 AAAATTACCATTTTA-CCCCCGAACTTTCC
*
26620222 AAAATTACCATTTTACCCTCGAACTTTC
1 AAAATTACCATTTTACCCCCGAACTTTC
26620250 TAATATCCCA
Statistics
Matches: 114, Mismatches: 14, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
26 3 0.03
27 5 0.04
28 21 0.18
29 36 0.32
30 38 0.33
31 8 0.07
32 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCCGAACTTTCC
Found at i:26620226 original size:87 final size:88
Alignment explanation
Indices: 26620135--26620299 Score: 219
Period size: 88 Copynumber: 1.9 Consensus size: 88
26620125 GATTTTACCA
* ** *
26620135 AAAATTATCATTTTACCCCCGAACTTTCCAA-ATTTCATTTTTGACCTCGA-TTT-ACTAAAAAT
1 AAAATTACCATTTTACCCCCGAACTTTCCAATATCCCATTTTTGACC-CAATTTTAAC-AAAAAT
26620197 TACCATTTTACCCCCCGAACTTTCC
64 TACCATTTTACCCCCCGAACTTTCC
* * *
26620222 AAAATTACCATTTTACCCTCGAACTTTCTAATATCCCATTTTTGACCCAATTTTAACCAAAATTA
1 AAAATTACCATTTTACCCCCGAACTTTCCAATATCCCATTTTTGACCCAATTTTAACAAAAATTA
*
26620287 CCATTTTGCCCCC
66 CCATTTTACCCCC
26620300 AGGTATCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
87 30 0.45
88 35 0.52
89 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.04, T:0.36
Consensus pattern (88 bp):
AAAATTACCATTTTACCCCCGAACTTTCCAATATCCCATTTTTGACCCAATTTTAACAAAAATTA
CCATTTTACCCCCCGAACTTTCC
Found at i:26625275 original size:15 final size:16
Alignment explanation
Indices: 26625255--26625285 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26625245 ACAAAAAATT
26625255 ATAAAAA-AAATAAAA
1 ATAAAAATAAATAAAA
26625270 ATAAAAATAAATAAAA
1 ATAAAAATAAATAAAA
26625286 GTTATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
ATAAAAATAAATAAAA
Found at i:26625329 original size:28 final size:28
Alignment explanation
Indices: 26625298--26625392 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 28
26625288 TATTATATTT
26625298 TTTTATAAAAATATAAAAAATATTTAAA
1 TTTTATAAAAATATAAAAAATATTTAAA
* * *
26625326 TTTTATTAAAATTTAGAAAAAAAATTATAAA
1 TTTTA-TAAAA-ATATAAAAAATATT-TAAA
* * *
26625357 ATATATAAAAATATACAAAAAT-TATAAAA
1 TTTTATAAAAATATA-AAAAATAT-TTAAA
26625386 TTTTATA
1 TTTTATA
26625393 GAGTTGTAAG
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
28 5 0.10
29 17 0.33
30 22 0.43
31 7 0.14
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (28 bp):
TTTTATAAAAATATAAAAAATATTTAAA
Found at i:26625357 original size:9 final size:10
Alignment explanation
Indices: 26625345--26625385 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
26625335 AATTTAGAAA
26625345 AAAAAT-TAT
1 AAAAATATAT
26625354 -AAAATATAT
1 AAAAATATAT
*
26625363 AAAAATATAC
1 AAAAATATAT
26625373 AAAAAT-TAT
1 AAAAATATAT
26625382 AAAA
1 AAAA
26625386 TTTTATAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 5 0.18
9 9 0.32
10 14 0.50
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATATAT
Found at i:26636143 original size:15 final size:14
Alignment explanation
Indices: 26636121--26636161 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
26636111 TGTAACAATT
26636121 AAATTAAAAATAAA
1 AAATTAAAAATAAA
26636135 AATATT-AAAATAAA
1 AA-ATTAAAAATAAA
*
26636149 AAATAAAAAATAA
1 AAATTAAAAATAA
26636162 CTAGATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 2 0.08
14 19 0.79
15 3 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAATTAAAAATAAA
Found at i:26638273 original size:32 final size:33
Alignment explanation
Indices: 26638215--26638289 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 33
26638205 CTATTTACTT
26638215 AAAATAA-ATAATTTCAATCAAAATAAAATTAAG
1 AAAATAACA-AATTTCAATCAAAATAAAATTAAG
* *
26638248 AAAATAACAAATTT-AGTCAAAATAAAATTAAT
1 AAAATAACAAATTTCAATCAAAATAAAATTAAG
26638280 AAAATAACAA
1 AAAATAACAA
26638290 CTTTGAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
32 26 0.67
33 12 0.31
34 1 0.03
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (33 bp):
AAAATAACAAATTTCAATCAAAATAAAATTAAG
Found at i:26638275 original size:16 final size:16
Alignment explanation
Indices: 26638232--26638286 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
26638222 ATAATTTCAA
26638232 TCAAAATAAAATTAAG
1 TCAAAATAAAATTAAG
*
26638248 --AAAATAACAAATTTAG
1 TCAAAAT-A-AAATTAAG
26638264 TCAAAATAAAATTAA-
1 TCAAAATAAAATTAAG
26638279 T-AAAATAA
1 TCAAAATAA
26638287 CAACTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 12 0.36
15 2 0.06
16 13 0.39
17 1 0.03
18 5 0.15
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.25
Consensus pattern (16 bp):
TCAAAATAAAATTAAG
Found at i:26641757 original size:12 final size:12
Alignment explanation
Indices: 26641729--26641767 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26641719 AATTTTTTTC
*
26641729 TTTTCCCCTTCT
1 TTTTTCCCTTCT
*
26641741 ATTTTTCCTTTCT
1 -TTTTTCCCTTCT
26641754 TTTTTCCCTTCT
1 TTTTTCCCTTCT
26641766 TT
1 TT
26641768 GCTCGATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTTCCCTTCT
Found at i:26648961 original size:32 final size:33
Alignment explanation
Indices: 26648901--26648975 Score: 100
Period size: 32 Copynumber: 2.3 Consensus size: 33
26648891 CTATTTACTT
*
26648901 AAAATAA-ATAATTTCAATCAAAATAAAATTAAG
1 AAAATAACA-AATTTCAATCAAAACAAAATTAAG
* *
26648934 AAAATAACAAATTT-AGTCAAAACAAAATTAAT
1 AAAATAACAAATTTCAATCAAAACAAAATTAAG
26648966 AAAATAACAA
1 AAAATAACAA
26648976 CTTTGAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 25 0.66
33 12 0.32
34 1 0.03
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (33 bp):
AAAATAACAAATTTCAATCAAAACAAAATTAAG
Found at i:26651222 original size:2 final size:2
Alignment explanation
Indices: 26651210--26651262 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
26651200 GCGTCCTGTG
*
26651210 CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26651252 CT CT CT CT CT C
1 CT CT CT CT CT C
26651263 GAGTTTACAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.02, T:0.49
Consensus pattern (2 bp):
CT
Found at i:26655488 original size:21 final size:21
Alignment explanation
Indices: 26655459--26655531 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
26655449 TAGTGAAATG
*
26655459 ATAACAAAATAGTGA-AAAACA
1 ATAA-AAAATAGTAATAAAACA
26655480 ATAAGAAAATAGTAATAAAACA
1 ATAA-AAAATAGTAATAAAACA
* *
26655502 ATAAAAAATAGCAAGAAAACA
1 ATAAAAAATAGTAATAAAACA
*
26655523 GTTAAAAAA
1 -ATAAAAAA
26655532 ATAACAGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 28 0.62
22 17 0.38
ACGTcount: A:0.68, C:0.07, G:0.10, T:0.15
Consensus pattern (21 bp):
ATAAAAAATAGTAATAAAACA
Found at i:26656429 original size:31 final size:31
Alignment explanation
Indices: 26656377--26656440 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 31
26656367 AAATAAACAT
26656377 ATATTAAATATATAATGTATAAA-ATTATTAA
1 ATATTAAATATATAA-GTATAAATATTATTAA
*
26656408 ATATTAAAATAATATAA-TATAAATATTTTTAA
1 ATATT-AAAT-ATATAAGTATAAATATTATTAA
26656440 A
1 A
26656441 AAAAATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 11 0.38
32 12 0.41
33 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (31 bp):
ATATTAAATATATAAGTATAAATATTATTAA
Found at i:26658936 original size:24 final size:24
Alignment explanation
Indices: 26658909--26658956 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
26658899 GAGTTGATGA
*
26658909 TGAAT-TGAAATGATATTATGAAAT
1 TGAATGTGAAATGATA-AATGAAAT
26658933 TGAATGTGAAATGATAAATGAAAT
1 TGAATGTGAAATGATAAATGAAAT
26658957 GGATTGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (24 bp):
TGAATGTGAAATGATAAATGAAAT
Found at i:26659499 original size:208 final size:208
Alignment explanation
Indices: 26659141--26659562 Score: 808
Period size: 208 Copynumber: 2.0 Consensus size: 208
26659131 ATTTCGATTA
26659141 ACCGATGAGCGCTGGGCGTAATTTATATACTTCGGACGTTTCGATCAGACATTGGGTGCCAGATT
1 ACCGATGAGCGCTGGGCGTAATTTATATACTTCGGACGTTTCGATCAGACATTGGGTGCCAGATT
* *
26659206 GGTGTGTTGGTTGGAATTCGTGTATCCATTCGAGTCTAAGTCAGGTTAATAAGGAATAGAAAATT
66 GGTGTGTTGGCTGGAATTCGTGTATCCATTCGAGTCCAAGTCAGGTTAATAAGGAATAGAAAATT
26659271 GTGCATAAGTAAAATGATGCTTATATTGATTTGGTAATAAGGACTGATTCTATAAATGCATATTT
131 GTGCATAAGTAAAATGATGCTTATATTGATTTGGTAATAAGGACTGATTCTATAAATGCATATTT
26659336 GTGATATATGAAT
196 GTGATATATGAAT
*
26659349 ACCGATGAGCGCTGGGCGTAATTTATATACTTCGGACGTTTCGATCAGGCATTGGGTGCCAGATT
1 ACCGATGAGCGCTGGGCGTAATTTATATACTTCGGACGTTTCGATCAGACATTGGGTGCCAGATT
26659414 GGTGTGTTGGCTGGAATTCGTGTATCCATTCGAGTCCAAGTCAGGTTAATAAGGAATAGAAAATT
66 GGTGTGTTGGCTGGAATTCGTGTATCCATTCGAGTCCAAGTCAGGTTAATAAGGAATAGAAAATT
26659479 GTGCATAAGTAAAATGATGCTTATATTGATTTGGTAATAAGGACTGATTCTATAAATGCATATTT
131 GTGCATAAGTAAAATGATGCTTATATTGATTTGGTAATAAGGACTGATTCTATAAATGCATATTT
26659544 GTGATATATGAAT
196 GTGATATATGAAT
*
26659557 ATCGAT
1 ACCGAT
26659563 AGCATGTGAA
Statistics
Matches: 210, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
208 210 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (208 bp):
ACCGATGAGCGCTGGGCGTAATTTATATACTTCGGACGTTTCGATCAGACATTGGGTGCCAGATT
GGTGTGTTGGCTGGAATTCGTGTATCCATTCGAGTCCAAGTCAGGTTAATAAGGAATAGAAAATT
GTGCATAAGTAAAATGATGCTTATATTGATTTGGTAATAAGGACTGATTCTATAAATGCATATTT
GTGATATATGAAT
Found at i:26666596 original size:26 final size:26
Alignment explanation
Indices: 26666550--26666599 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26666540 AATAAATTAC
* *
26666550 TATTTTATTAAAATTTAATTTTATGA
1 TATTTTATAAAAAGTTAATTTTATGA
26666576 TATTTTAGTAAAAAGTT-ATTTTAT
1 TATTTTA-TAAAAAGTTAATTTTAT
26666600 TTTTTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (26 bp):
TATTTTATAAAAAGTTAATTTTATGA
Found at i:26666752 original size:21 final size:23
Alignment explanation
Indices: 26666707--26666752 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
26666697 CAGTAGTAAC
26666707 AAGAATGAAAATTGTTAGCATTAAT
1 AAGAATGAAAATTGTTA--ATTAAT
26666732 AAGAATGAAAATT-TT-ATTAAT
1 AAGAATGAAAATTGTTAATTAAT
26666753 TTTTAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
24 2 0.10
25 13 0.62
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (23 bp):
AAGAATGAAAATTGTTAATTAAT
Found at i:26667130 original size:15 final size:16
Alignment explanation
Indices: 26667104--26667134 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26667094 TTAAGTGGAC
26667104 TAATACTTATTTATTA
1 TAATACTTATTTATTA
26667120 TAATA-TTATTTATTA
1 TAATACTTATTTATTA
26667135 AGTTCGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATACTTATTTATTA
Found at i:26667263 original size:18 final size:18
Alignment explanation
Indices: 26667230--26667264 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26667220 TCAGTTAACT
**
26667230 GATCGATTAATTGAATTC
1 GATCGATTAACCGAATTC
26667248 GATCGATTAACCGAATT
1 GATCGATTAACCGAATT
26667265 AATTTAGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (18 bp):
GATCGATTAACCGAATTC
Found at i:26668758 original size:88 final size:88
Alignment explanation
Indices: 26668554--26668758 Score: 222
Period size: 89 Copynumber: 2.3 Consensus size: 88
26668544 AAGTTCTCAC
* * *
26668554 ATTTTTTT-ACTCGATTAGGTACTTGAA-TTACCAAAATGCATAAAAAAGACCCTCAAATCTTTT
1 ATTTTTTTGACTCAATTGGGTACTTGAACTTACCAAAATCCATAAAAAAGACCCTCAAATCTTTT
* * *
26668617 CAAAAAAAATCAATTAAGCCCTT
66 CAAAAAAAAGCAATTAAACCCTG
* * * * **
26668640 ATTTTTTTTGTACTCAATTGGATATTTGAACTT-TCAAAATCCATCAAAAAGGTCCTCAAA-CTT
1 A-TTTTTTTG-ACTCAATTGGGTACTTGAACTTACCAAAATCCATAAAAAAGACCCTCAAATC-T
26668703 TTTC-AAAAAAAGCAATTAAACTCCTG
63 TTTCAAAAAAAAGCAATTAAAC-CCTG
26668729 ATTTTTTTGCACTCAATTGGGTACTTGAAC
1 ATTTTTTTG-ACTCAATTGGGTACTTGAAC
26668759 CACCCCTAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
86 1 0.01
87 7 0.07
88 42 0.43
89 46 0.47
90 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.36
Consensus pattern (88 bp):
ATTTTTTTGACTCAATTGGGTACTTGAACTTACCAAAATCCATAAAAAAGACCCTCAAATCTTTT
CAAAAAAAAGCAATTAAACCCTG
Found at i:26668899 original size:30 final size:28
Alignment explanation
Indices: 26668865--26668922 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
26668855 ATAGAAGTTA
26668865 TTAAATTTTAATGAAAAACTATAAAAATAT
1 TTAAATTTT-ATGAAAAACTA-AAAAATAT
* *
26668895 TTAAATTTTATTAAAAATTAAAAAATAT
1 TTAAATTTTATGAAAAACTAAAAAATAT
26668923 ATATAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 8 0.31
29 9 0.35
30 9 0.35
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (28 bp):
TTAAATTTTATGAAAAACTAAAAAATAT
Found at i:26668920 original size:20 final size:19
Alignment explanation
Indices: 26668901--26668954 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
26668891 ATATTTAAAT
26668901 TTTATTAAAAATTAAAAAA
1 TTTATTAAAAATTAAAAAA
*
26668920 TATATATAAAAATCGTAAAAAA
1 TTTAT-TAAAAAT--TAAAAAA
*
26668942 ATTA-TAAAAATTA
1 TTTATTAAAAATTA
26668955 TTGTAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
18 2 0.07
19 4 0.14
20 14 0.48
22 9 0.31
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
TTTATTAAAAATTAAAAAA
Found at i:26668950 original size:9 final size:9
Alignment explanation
Indices: 26668821--26668955 Score: 54
Period size: 9 Copynumber: 14.0 Consensus size: 9
26668811 ACATGTGGCA
26668821 AAAAATTAT
1 AAAAATTAT
* *
26668830 AAAAAATAA
1 AAAAATTAT
**
26668839 AAAAACAAT
1 AAAAATTAT
*
26668848 AAAAGTTAT
1 AAAAATTAT
* *
26668857 AGAAGTTATT
1 AAAAATTA-T
**
26668867 AAATTTTAAT
1 AAAAATT-AT
*
26668877 GAAAAACTAT
1 -AAAAATTAT
*
26668887 AAAAATATTT
1 AAAAAT-TAT
**
26668897 AAATTTTATT
1 AAAAATTA-T
*
26668907 AAAAATTAA
1 AAAAATTAT
26668916 AAAATATATAT
1 AAAA-AT-TAT
*
26668927 AAAAATCGTAA
1 AAAAAT--TAT
26668938 AAAAATTAT
1 AAAAATTAT
26668947 AAAAATTAT
1 AAAAATTAT
26668956 TGTAATAAAA
Statistics
Matches: 91, Mismatches: 27, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
9 47 0.52
10 25 0.27
11 19 0.21
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26669158 original size:20 final size:19
Alignment explanation
Indices: 26669135--26669258 Score: 81
Period size: 20 Copynumber: 6.4 Consensus size: 19
26669125 TTTTGATGCA
*
26669135 TTTTATAAATTTTTTATAAT
1 TTTTATAAA-ATTTTATAAT
* *
26669155 TTTTATAAAAATTTACAAT
1 TTTTATAAAATTTTATAAT
* * ** *
26669174 TTTT-TATATTTTTACGAC
1 TTTTATAAAATTTTATAAT
** *
26669192 TTTTATAAAAAAATTCTAAT
1 TTTTAT-AAAATTTTATAAT
*
26669212 TTTTA-ATAAATTTTATATT
1 TTTTATA-AAATTTTATAAT
*
26669231 TTTTATTAAAATTTAATAAT
1 TTTTA-TAAAATTTTATAAT
26669251 TTTTATAA
1 TTTTATAA
26669259 TTTTTTTATA
Statistics
Matches: 77, Mismatches: 22, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
18 14 0.18
19 28 0.36
20 34 0.44
21 1 0.01
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (19 bp):
TTTTATAAAATTTTATAAT
Found at i:26669169 original size:19 final size:19
Alignment explanation
Indices: 26669147--26669258 Score: 75
Period size: 19 Copynumber: 5.8 Consensus size: 19
26669137 TTATAAATTT
26669147 TTTATAATTTTTATAAAAA
1 TTTATAATTTTTATAAAAA
* * **
26669166 TTTACAATTTTT-TATATT
1 TTTATAATTTTTATAAAAA
** *
26669184 TTTACGACTTTTATAAAAAA
1 TTTATAATTTTTAT-AAAAA
* * *
26669204 ATTCTAATTTTTA-ATAAAT
1 TTTATAATTTTTATA-AAAA
* *
26669223 TTTATATTTTTTATTAAAA
1 TTTATAATTTTTATAAAAA
26669242 TTTAATAATTTTTATAA
1 TTT-ATAATTTTTATAA
26669259 TTTTTTTATA
Statistics
Matches: 66, Mismatches: 22, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
18 14 0.21
19 31 0.47
20 21 0.32
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (19 bp):
TTTATAATTTTTATAAAAA
Found at i:26669185 original size:38 final size:38
Alignment explanation
Indices: 26669134--26669274 Score: 99
Period size: 38 Copynumber: 3.7 Consensus size: 38
26669124 TTTTTGATGC
* *
26669134 ATTTTATAAATTTTTTATAATTTTTATAAAAATTTACA
1 ATTTTTTATATTTTTTATAATTTTTATAAAAATTTACA
** * *
26669172 ATTTTTTATA-TTTTTACGACTTTTATAAAAAAATT-CTA
1 ATTTTTTATATTTTTTATAATTTTTAT-AAAAATTTAC-A
* ** * *
26669210 ATTTTTAATAAATTTTATATTTTTTATTAAAATTTA-A
1 ATTTTTTATATTTTTTATAATTTTTATAAAAATTTACA
* *
26669247 TAATTTTTATAATTTTTTTATAGTTTTT
1 -ATTTTTTAT-A-TTTTTTATAATTTTT
26669275 TATCACATGT
Statistics
Matches: 77, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
37 15 0.19
38 38 0.49
39 12 0.16
40 12 0.16
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (38 bp):
ATTTTTTATATTTTTTATAATTTTTATAAAAATTTACA
Found at i:26670294 original size:25 final size:25
Alignment explanation
Indices: 26670248--26670295 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26670238 AAGGAAGTTG
**
26670248 TGCTAATTTCATTTTTAAAAAATTA
1 TGCTAATTTCATTGATAAAAAATTA
* *
26670273 TGCTAATTTTATTGATATAAAAT
1 TGCTAATTTCATTGATAAAAAAT
26670296 AAAGTTATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (25 bp):
TGCTAATTTCATTGATAAAAAATTA
Found at i:26672764 original size:2 final size:2
Alignment explanation
Indices: 26672757--26672782 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26672747 TTAAAGATTC
26672757 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26672783 GCATTGGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26693514 original size:502 final size:502
Alignment explanation
Indices: 26692572--26694063 Score: 2563
Period size: 502 Copynumber: 3.0 Consensus size: 502
26692562 AATGATTTTA
* *
26692572 AAAATTGTGTTTTCAACCAAGCTCCCTATGCGAGCTCTCTGCAATAAGATTCTGCTTCTTAGTGA
1 AAAATTGTGTTTTCAACCAAGCTCCCTATGCGAGCTCTCTGCAATAAGATTATGCTTCTTAGCGA
26692637 GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCGAGCCATGTTG
66 GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCGAGCCATGTTG
* * *
26692702 GATATATTGGTATACCAAAGGATTGTGAGTACTCA-CCATAAAATTCTTAGTTAAGTTTTTTTTG
131 GATATATTGGTACACCAAAGGATTGTGAGTACTCACCCATAAACTTCTTAGTTAAG-ATTTTTTG
* * *
26692766 TAATTTTGGGCGTTAAGGCCTTGGGACATGTAGAATGATAAAGGAATGTCGAGCTATGCTCCATT
195 TAATTTTGGGCGTTGAGGCCTTGGGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATT
26692831 CACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTG
260 CACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTG
* * *
26692896 GACTCTTTGAGTCATTCTAAGGCGTTATAAAGAGATCCACATATCCAACAAGACAAAGTTTCTAT
325 GACTCTTTGAGTCATTCTGAGGCGTTATAAAGAGATCCACATATCCAACAAGATAAAGTTTTTAT
*
26692961 TAAATGAAACGGTCTTGCAACCTAAGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGTGAAC
390 TAAATGAAACGGTCTTGCAACCTAAGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGCGAAC
* *
26693026 GGATCTTGCAACCTAAGGTTGTAACCCCCTTTACTCGGCCTAAGAGAC
455 GGATCTTGCGACCTAAGGTTGTAACCCCCTTTACTCGACCTAAGAGAC
* *
26693074 AAAATTGTGTTTTCAACCAAGCTCCCTATGCAAGCTCTCTGCAATAAGATTATGCTTCTTAACGA
1 AAAATTGTGTTTTCAACCAAGCTCCCTATGCGAGCTCTCTGCAATAAGATTATGCTTCTTAGCGA
*
26693139 GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCAAGCCATGTTG
66 GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCGAGCCATGTTG
*
26693204 GATATATTGGTACACCAAAGAATTGTGAGTACTCACCCATAAACTTCTTAGTTAAGATTTTTTGT
131 GATATATTGGTACACCAAAGGATTGTGAGTACTCACCCATAAACTTCTTAGTTAAGATTTTTTGT
* **
26693269 AATTTTGGGCGTTGAGGCCCTAAGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATTC
196 AATTTTGGGCGTTGAGGCCTTGGGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATTC
*
26693334 ACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCAATACACTTTGGGATATGTTTTTGG
261 ACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTGG
*
26693399 ACTCTTTGAGTCATTCTGAGGCGTTATAAAGAGATCCACATATCCAACAGGATAAAGTTTTTATT
326 ACTCTTTGAGTCATTCTGAGGCGTTATAAAGAGATCCACATATCCAACAAGATAAAGTTTTTATT
* * *
26693464 AAACGAACCGGTCTTGCAACCTAGGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGCGAACG
391 AAATGAAACGGTCTTGCAACCTAAGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGCGAACG
* * *
26693529 GATCTTACGACCTAAGGTTGTAACCCCCTTTACTTGACCTAGGAGAC
456 GATCTTGCGACCTAAGGTTGTAACCCCCTTTACTCGACCTAAGAGAC
*
26693576 AAAATTGTGTTTTCAACCAAGCTCCCTATACGAGCTCTCTGCAATAAGATTATGCTTCTTAGCGA
1 AAAATTGTGTTTTCAACCAAGCTCCCTATGCGAGCTCTCTGCAATAAGATTATGCTTCTTAGCGA
* * *
26693641 GGCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTATGTGGTCCTTTGCGAGCCATGTTG
66 GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCGAGCCATGTTG
* *
26693706 GATATATTGGTACACCAAAGGATTGTGAGTACTCACTCATAAACTTCTTAGTTAAGCTTTTTTGT
131 GATATATTGGTACACCAAAGGATTGTGAGTACTCACCCATAAACTTCTTAGTTAAGATTTTTTGT
26693771 AATTTTGGGCGTTGAGGCCTTGGGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATTC
196 AATTTTGGGCGTTGAGGCCTTGGGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATTC
* *
26693836 ATTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTGA
261 ACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTGG
*
26693901 ACTCTTTGAGTCATTCTGAGGCGTTACAAAGAGATCCACATATCCAACAAGATAAAGTTTTTATT
326 ACTCTTTGAGTCATTCTGAGGCGTTATAAAGAGATCCACATATCCAACAAGATAAAGTTTTTATT
* * * * * *
26693966 AAATGAATCGGTCTCGCAACCTAAGACATACCCTATTCGTGTTTTATAATAAGTTTGTACGAATG
391 AAATGAAACGGTCTTGCAACCTAAGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGCGAACG
*
26694031 GATCTTGCGACCTAAGGCTGTAACCCCCTTTAC
456 GATCTTGCGACCTAAGGTTGTAACCCCCTTTAC
26694064 CTGGTGTAGA
Statistics
Matches: 932, Mismatches: 57, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
502 913 0.98
503 19 0.02
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (502 bp):
AAAATTGTGTTTTCAACCAAGCTCCCTATGCGAGCTCTCTGCAATAAGATTATGCTTCTTAGCGA
GCCTAGCTCTGTATGTGAGCTTTCTATGATATGTCTTTGTGTGTGCTCCTTTGCGAGCCATGTTG
GATATATTGGTACACCAAAGGATTGTGAGTACTCACCCATAAACTTCTTAGTTAAGATTTTTTGT
AATTTTGGGCGTTGAGGCCTTGGGACATGTAAAATGATAAGGGAATGTCGAGCTATGCTCCATTC
ACTGGGATAGTTTGGTGTATAGGAGAGTGTATTGCCTCGCACTACACTTTGGGATATGTTTTTGG
ACTCTTTGAGTCATTCTGAGGCGTTATAAAGAGATCCACATATCCAACAAGATAAAGTTTTTATT
AAATGAAACGGTCTTGCAACCTAAGACATACCCTATTCGTGTTTTCTGATAAGTTTGTGCGAACG
GATCTTGCGACCTAAGGTTGTAACCCCCTTTACTCGACCTAAGAGAC
Found at i:26696661 original size:37 final size:36
Alignment explanation
Indices: 26696611--26696733 Score: 117
Period size: 37 Copynumber: 3.3 Consensus size: 36
26696601 ACAAAGCCTG
*
26696611 CTAGGCACATAGCCCGAATACATC-GACATGAAGTCTA
1 CTAGGCACATAGCCTGAATACA-CAGACA-GAAGTCTA
* * * *
26696648 CTAGGCACATAGCCTAAAAACACTGGCACGAA-TCCTA
1 CTAGGCACATAGCCTGAATACACAGACA-GAAGT-CTA
*
26696685 CTAGGCACATAGCCTGAATACACCAGCACA-AAGCCTA
1 CTAGGCACATAGCCTGAATACA-CAG-ACAGAAGTCTA
26696722 CTAGGCACATAG
1 CTAGGCACATAG
26696734 TGTAACAACC
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.03
37 65 0.92
38 2 0.03
39 2 0.03
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (36 bp):
CTAGGCACATAGCCTGAATACACAGACAGAAGTCTA
Found at i:26698816 original size:36 final size:36
Alignment explanation
Indices: 26698774--26698872 Score: 155
Period size: 36 Copynumber: 2.8 Consensus size: 36
26698764 TGGTAGCAAG
*
26698774 CATGACCTTTGGGTCAATAGGGAGTAAAATGAGCAT
1 CATGACCTTTTGGTCAATAGGGAGTAAAATGAGCAT
26698810 CATGACCTTTTGGTCAACT-GGGAGTAAAATGAGCAT
1 CATGACCTTTTGGTCAA-TAGGGAGTAAAATGAGCAT
* *
26698846 CATGACCTTTTGGTCAACAGGAAGTAA
1 CATGACCTTTTGGTCAATAGGGAGTAA
26698873 GCATGACCTT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
36 57 0.98
37 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (36 bp):
CATGACCTTTTGGTCAATAGGGAGTAAAATGAGCAT
Found at i:26698892 original size:28 final size:28
Alignment explanation
Indices: 26698846--26698900 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
26698836 AAATGAGCAT
*
26698846 CATGACCTTTTGGTCAACAGGAAGTAAG
1 CATGACCTTTGGGTCAACAGGAAGTAAG
*
26698874 CATGACCTTTGGGTTAACAGGAAGTAA
1 CATGACCTTTGGGTCAACAGGAAGTAA
26698901 ATCAGATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (28 bp):
CATGACCTTTGGGTCAACAGGAAGTAAG
Found at i:26700094 original size:21 final size:21
Alignment explanation
Indices: 26700068--26700121 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
26700058 AAGCTTACTA
*
26700068 GGCACATAGCCTGAATACACT
1 GGCACAAAGCCTGAATACACT
26700089 GGCACAAAGCCTGAATACACT
1 GGCACAAAGCCTGAATACACT
26700110 GGCACAAAGCCT
1 GGCACAAAGCCT
26700122 ATTAGGCACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.35, C:0.30, G:0.20, T:0.15
Consensus pattern (21 bp):
GGCACAAAGCCTGAATACACT
Found at i:26703569 original size:22 final size:22
Alignment explanation
Indices: 26703538--26703579 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26703528 CATGTCAACT
* *
26703538 GTCAATGGTCAATTCGGGTTTG
1 GTCAACGGTCAAGTCGGGTTTG
*
26703560 GTCAACGGTCGAGTCGGGTT
1 GTCAACGGTCAAGTCGGGTT
26703580 GTTGGGTCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.31
Consensus pattern (22 bp):
GTCAACGGTCAAGTCGGGTTTG
Found at i:26705281 original size:361 final size:361
Alignment explanation
Indices: 26704584--26705668 Score: 1801
Period size: 361 Copynumber: 3.0 Consensus size: 361
26704574 TTACCCAAAA
* * * * *
26704584 TTATGTTTTCTAACAGGATGTGCGAACTGGGTCCCGTAACCTTACCCGCAAACCTAACATGCGAA
1 TTATGTTTTCTGACAGGATGTGCGAACTGGGTCCCGTAACCTCACCTGCGAACCTAACACGCGAA
*
26704649 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTGAAAAATCAACTCGAAATCACCAAG
66 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTGAAAGATCAACTCGAAATCACCAAG
*
26704714 AAGGGGTGAATTGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAATAAAAAAACACA
131 AGGGGGTGAATTGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAAT-AAAAAACACA
* * * *
26704779 ACGATTTATGTTGGTTTGGCGTCAAATGCCTACTTTATTACCTTAACTTTCCACAACTAAAGATT
195 ACGATTTATGTTGGTTCGGCATCAATTGCCTACTTTATTACCTTAACTTTCCACAACTAAGGATT
*
26704844 TTCCCAAATTCACTAATTTGATCAACCTTTGAGGAAAAGGTTTAAACTTACAATCTCCCTTAAAA
260 TTCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCCTTAAAA
*
26704909 TCTCCACCCAAAATCTTAAGATTGCAACTCCCTTAAC
325 TCTCTACCCAAAATCTTAAGATTGCAACTCCCTTAAC
* * * * * *
26704946 TTATGTTTTCTGATAAGATGTACGAACTGGGTCCCGCAACCTCACTTGCGAACCAAACACGCGAA
1 TTATGTTTTCTGACAGGATGTGCGAACTGGGTCCCGTAACCTCACCTGCGAACCTAACACGCGAA
* *
26705011 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTCGAAAGATCAACTCAAAATCACCAAG
66 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTGAAAGATCAACTCGAAATCACCAAG
* * *
26705076 AGGGGGTGAATTGGCCTTTAATAAAATGATGGAAGCAACGAATGAAAGAGCAATAAAAAACACAA
131 AGGGGGTGAATTGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAATAAAAAACACAA
26705141 CGATTTATGTTGGTTCGGCATCAATTGCCTACTTTATTACCTTAACTTTCCACAACTAAGGATTT
196 CGATTTATGTTGGTTCGGCATCAATTGCCTACTTTATTACCTTAACTTTCCACAACTAAGGATTT
26705206 TCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCCTTAAAAT
261 TCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCCTTAAAAT
26705271 CTCTACCCAAAATCTTAAGATTGCAACTCCCTTAAC
326 CTCTACCCAAAATCTTAAGATTGCAACTCCCTTAAC
* * *
26705307 TTAAGTTTTCTGACAGGATGCGCGAACTGGGTCCCGTAACCTCACCTGCGAACCTAGCACGCGAA
1 TTATGTTTTCTGACAGGATGTGCGAACTGGGTCCCGTAACCTCACCTGCGAACCTAACACGCGAA
* *
26705372 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTAAAAGATCAACTCGAAATCACTAAG
66 ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTGAAAGATCAACTCGAAATCACCAAG
* *
26705437 GGGGAGGTTGAATAGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAATAAAAAACAC
131 AGGG-GG-TGAATTGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAATAAAAAACAC
* * * * * *
26705502 AACAATTTATGTTGGTTCGTCCTCAATTGCCTACTCTACTACCTTAACTTTCCACAATTAAGGAT
194 AACGATTTATGTTGGTTCGGCATCAATTGCCTACTTTATTACCTTAACTTTCCACAACTAAGGAT
*
26705567 TTTCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCTTTAAA
259 TTTCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCCTTAAA
26705632 ATCTCTACCCAAAATCTTAAGATTGCAACTCCCTTAA
324 ATCTCTACCCAAAATCTTAAGATTGCAACTCCCTTAA
26705669 GGTTTCTACC
Statistics
Matches: 672, Mismatches: 49, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
361 291 0.43
362 168 0.25
363 213 0.32
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (361 bp):
TTATGTTTTCTGACAGGATGTGCGAACTGGGTCCCGTAACCTCACCTGCGAACCTAACACGCGAA
ATGATTTCAAGACTAAGTTTCCTTTTGTTTTTGTTAGCTTGAAAGATCAACTCGAAATCACCAAG
AGGGGGTGAATTGGCCTTTAAGAAAATGGTGGAAGCAACGAATGAATGAGCAATAAAAAACACAA
CGATTTATGTTGGTTCGGCATCAATTGCCTACTTTATTACCTTAACTTTCCACAACTAAGGATTT
TCCCAAATTCACTAATTTGATCAACCTTTGAGGACAAGGTTTAAACTTACAATCTCCCTTAAAAT
CTCTACCCAAAATCTTAAGATTGCAACTCCCTTAAC
Found at i:26706379 original size:22 final size:24
Alignment explanation
Indices: 26706354--26706397 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
26706344 ATTTTGTTCA
26706354 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATATCAAAAAC
*
26706376 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
26706398 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAAAC
Found at i:26709512 original size:6 final size:6
Alignment explanation
Indices: 26709479--26709511 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
26709469 TTATTCCCCA
*
26709479 CCCCTC CCCTTC CCCCTC CCCCTC CCCC-C CCCC
1 CCCCTC CCCCTC CCCCTC CCCCTC CCCCTC CCCC
26709512 CAAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCCTC
Found at i:26723080 original size:10 final size:10
Alignment explanation
Indices: 26723047--26723080 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26723037 GAATTAACCT
26723047 AAATGCAATG
1 AAATGCAATG
* *
26723057 AAATGAAATA
1 AAATGCAATG
26723067 AAATGCAATG
1 AAATGCAATG
26723077 AAAT
1 AAAT
26723081 AGTTTAGCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.59, C:0.06, G:0.15, T:0.21
Consensus pattern (10 bp):
AAATGCAATG
Found at i:26724606 original size:29 final size:29
Alignment explanation
Indices: 26724568--26724625 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26724558 AACAAAATAA
*
26724568 TTAAGTAGATAAATAAATACATGAAAATT
1 TTAAGCAGATAAATAAATACATGAAAATT
26724597 TTAAGCAGATAAATAAATACATGAAAATT
1 TTAAGCAGATAAATAAATACATGAAAATT
26724626 GAACATCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.29
Consensus pattern (29 bp):
TTAAGCAGATAAATAAATACATGAAAATT
Found at i:26724969 original size:60 final size:59
Alignment explanation
Indices: 26724887--26725103 Score: 242
Period size: 60 Copynumber: 3.6 Consensus size: 59
26724877 GGAAAAAGTG
* * *
26724887 TAATTTTTGGAAGGTC-AGGGGTAAAAATGTAATTTTTGAGAAGTTTAAGGGGAAAACATA
1 TAATTTTTTGAAGTTCGA-GGGTAAAAATGTAATTTTTGAGAAGTTTAAGGGCAAAA-ATA
* * * * *
26724947 TGATTTTTTGAAGTACGAGGGTAAAAATGTGATTTTTG-GAAGTTCAAGGGCAAAAATG
1 TAATTTTTTGAAGTTCGAGGGTAAAAATGTAATTTTTGAGAAGTTTAAGGGCAAAAATA
* * *
26725005 TAATTTTTTGAGAAGTTCGAGGGT-AAAATATAATTTTTGAGAAGTTTGAGGGCATAAATA
1 TAATTTTTT--GAAGTTCGAGGGTAAAAATGTAATTTTTGAGAAGTTTAAGGGCAAAAATA
* * *
26725065 TAATTTTTGAGAAGTTCGGGGGTCAAAATGTAATTTTTG
1 TAATTTTT-TGAAGTTCGAGGGTAAAAATGTAATTTTTG
26725104 GAAAGCTTGG
Statistics
Matches: 132, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
58 10 0.08
59 40 0.30
60 81 0.61
61 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (59 bp):
TAATTTTTTGAAGTTCGAGGGTAAAAATGTAATTTTTGAGAAGTTTAAGGGCAAAAATA
Found at i:26725033 original size:30 final size:29
Alignment explanation
Indices: 26724817--26725103 Score: 212
Period size: 29 Copynumber: 9.7 Consensus size: 29
26724807 TTGGAAAATT
* * *
26724817 GAGGCTAAAATGGTAATTTTT-AGATGCTC
1 GAGGGTAAAAT-GTAATTTTTGAGAAGTTC
*
26724846 -AGGGGTAAAATGGTGATTTTTGA-AAGTTC
1 GA-GGGTAAAAT-GTAATTTTTGAGAAGTTC
* *
26724875 G-GGGAAAAAGTGTAATTTTTG-GAAGGTC
1 GAGGGTAAAA-TGTAATTTTTGAGAAGTTC
*
26724903 -AGGGGTAAAAATGTAATTTTTGAGAAGTTT
1 GA-GGGT-AAAATGTAATTTTTGAGAAGTTC
* * * * * *
26724933 AAGGGGAAAACATATGATTTTT-TGAAGTAC
1 GA-GGGTAAA-ATGTAATTTTTGAGAAGTTC
*
26724963 GAGGGTAAAAATGTGATTTTTG-GAAGTTC
1 GAGGGT-AAAATGTAATTTTTGAGAAGTTC
* *
26724992 AAGGGCAAAAATGTAATTTTTTGAGAAGTTC
1 GAGGG-TAAAATGTAA-TTTTTGAGAAGTTC
* *
26725023 GAGGGTAAAATATAATTTTTGAGAAGTTT
1 GAGGGTAAAATGTAATTTTTGAGAAGTTC
* *
26725052 GAGGGCATAAATATAATTTTTGAGAAGTTC
1 GAGGGTA-AAATGTAATTTTTGAGAAGTTC
*
26725082 GGGGGTCAAAATGTAATTTTTG
1 GAGGGT-AAAATGTAATTTTTG
26725104 GAAAGCTTGG
Statistics
Matches: 208, Mismatches: 32, Indels: 35
0.76 0.12 0.13
Matches are distributed among these distances:
28 22 0.11
29 86 0.41
30 74 0.36
31 26 0.12
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (29 bp):
GAGGGTAAAATGTAATTTTTGAGAAGTTC
Found at i:26725116 original size:30 final size:30
Alignment explanation
Indices: 26724823--26725134 Score: 204
Period size: 30 Copynumber: 10.5 Consensus size: 30
26724813 AATTGAGGCT
* *
26724823 AAAATGGTAATTTTT-AGATGCTC-AGGGGT-
1 AAAAT-GTAATTTTTGAGAAGTTCGA-GGGTC
* *
26724852 AAAATGGTGATTTTTGA-AAGTTCG-GGG-A
1 AAAAT-GTAATTTTTGAGAAGTTCGAGGGTC
* *
26724880 AAAAGTGTAATTTTTG-GAAGGTC-AGGGGTA
1 AAAA-TGTAATTTTTGAGAAGTTCGA-GGGTC
** **
26724910 AAAATGTAATTTTTGAGAAGTTTAAGGGGA
1 AAAATGTAATTTTTGAGAAGTTCGAGGGTC
* * * * *
26724940 AAACATATGATTTTT-TGAAGTACGAGGGTA
1 AAA-ATGTAATTTTTGAGAAGTTCGAGGGTC
* *
26724970 AAAATGTGATTTTTG-GAAGTTCAAGGG-C
1 AAAATGTAATTTTTGAGAAGTTCGAGGGTC
26724998 AAAAATGTAATTTTTTGAGAAGTTCGAGGGT-
1 -AAAATGTAA-TTTTTGAGAAGTTCGAGGGTC
* *
26725029 AAAATATAATTTTTGAGAAGTTTGAGGG-C
1 AAAATGTAATTTTTGAGAAGTTCGAGGGTC
* *
26725058 ATAAATATAATTTTTGAGAAGTTCGGGGGTC
1 A-AAATGTAATTTTTGAGAAGTTCGAGGGTC
*
26725089 AAAATGTAATTTTTG-GAAAGCTT-GGGGGTC
1 AAAATGTAATTTTTGAG-AAG-TTCGAGGGTC
*
26725119 AAAAATGTGATTTTTG
1 -AAAATGTAATTTTTG
26725135 GACAGTTTAG
Statistics
Matches: 234, Mismatches: 27, Indels: 42
0.77 0.09 0.14
Matches are distributed among these distances:
28 21 0.09
29 81 0.35
30 93 0.40
31 39 0.17
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.34
Consensus pattern (30 bp):
AAAATGTAATTTTTGAGAAGTTCGAGGGTC
Found at i:26726942 original size:16 final size:17
Alignment explanation
Indices: 26726921--26726959 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
26726911 ATTTAAAGTT
26726921 TAAATTT-AATTTAAAA
1 TAAATTTAAATTTAAAA
26726937 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
26726954 TAAATT
1 TAAATT
26726960 CAAACTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:26726946 original size:6 final size:6
Alignment explanation
Indices: 26726911--26726952 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
26726901 GTATTTGGAC
*
26726911 ATTTAA AGTTTAA ATTT-A ATTTAA A-ATAA ATTTAA ATTTAA A
1 ATTTAA A-TTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
26726953 ATAAATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 9 0.29
6 16 0.52
7 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
ATTTAA
Found at i:26726957 original size:22 final size:23
Alignment explanation
Indices: 26726914--26726957 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
26726904 TTTGGACATT
**
26726914 TAAAGTTTAAATTTAATTTAAAA
1 TAAAGTTTAAATTTAAAATAAAA
26726937 TAAA-TTTAAATTTAAAATAAA
1 TAAAGTTTAAATTTAAAATAAA
26726958 TTCAAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
TAAAGTTTAAATTTAAAATAAAA
Found at i:26727033 original size:17 final size:17
Alignment explanation
Indices: 26726990--26727033 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
26726980 AATTTAGTTT
* *
26726990 AAATTTAAAGTAAATTC
1 AAATTTAAAATAAATTA
*
26727007 AAACTT-AAATAAATTA
1 AAATTTAAAATAAATTA
26727023 AAATTTAAAAT
1 AAATTTAAAAT
26727034 TGGGTCCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (17 bp):
AAATTTAAAATAAATTA
Found at i:26727620 original size:50 final size:48
Alignment explanation
Indices: 26727566--26728327 Score: 365
Period size: 50 Copynumber: 15.3 Consensus size: 48
26727556 TACCAATCGC
* * *
26727566 ATCTTCTAAGGTACCAGGCTCGTCGTTGCGGCCTCAACCTTCCCTTTTAT
1 ATCTTCTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACCTTCCC-TTCAT
** * *
26727616 ATCTTCGT--GGTACCGGGTTCGCCGTCACGACCTCAACCTTTCCCTTCGT
1 ATCTTC-TAAGGTACC-GGTTCGCCGTTGCGGCCTCAACC-TTCCCTTCAT
* * * * * **
26727665 ATCTTCTAAGATATCGAATTCGCTGTCGCGGCCTTCATTCTTCCCTTCAT
1 ATCTTCTAAGGTACCG-GTTCGCCGTTGCGGCC-TCAACCTTCCCTTCAT
* * * * * * *
26727715 CTTTTC-ATGGTACCGGGTTCGCCGCTGCGGCCTCAACTTTTCCTATCAC
1 ATCTTCTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACCTTCCCT-TCAT
* * * *
26727764 ATCTTCTTAA-GTATCGGATTCACCGTCGCGGCTTCAATCCTTCCCTTCAT
1 ATCTTC-TAAGGTACCGG-TTCGCCGTTGCGGCCTCAA-CCTTCCCTTCAT
* * ** * *
26727814 CTCTTC-ATGGTACTATGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAC
1 ATCTTCTAAGGTAC-CGGTTCGCCGTTGCGGCCTCAACC-TTCCCTTCAT
* * * **
26727863 ATCTTCTTAGGTACCAGGTTCGTCGTTGCGGCCTCAACCTTTCCTTTTGT
1 ATCTTCTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACC-TTCCCTTCAT
* * * * *
26727913 ATCTTCTTAGGTACCGGATTCGTCGTAGCCGCCTCAATCTTTCCCTTCAT
1 ATCTTCTAAGGTACCGG-TTCGCCGTTGCGGCCTCAA-CCTTCCCTTCAT
* * * * * *
26727963 TTCTTC-ATGGTACTGGGTTCGCCGTTGCGGCCTTAACCTTTCTCATT-AC
1 ATCTTCTAAGGTAC-CGGTTCGCCGTTGCGGCCTCAACC-TTC-CCTTCAT
* * * * *
26728012 ATCTTCTTAGGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTAC
1 ATCTTCTAAGGTA-CCGGTTCGCCGTTGCGGCCTCAACC-TTCCCTTCAT
* * * * *
26728062 ATCTTTTTAAGGTACCGGATTCGTCGTCGCGACCTCAATCTTTCCCTTCAT
1 ATC-TTCTAAGGTACCGG-TTCGCCGTTGCGGCCTCAA-CCTTCCCTTCAT
* * * * * * * *
26728113 CTCTTC-ATGGTACTAGGTTCACCGTTGCGACCTCAACTTTTCCCTTTAC
1 ATCTTCTAAGGTAC-CGGTTCGCCGTTGCGGCCTCAAC-CTTCCCTTCAT
* * * * *
26728162 ATCTTTTTAAGGTATCGGATTTGCCGTTGCGGCCTTAATCCTTCCCTGTCCT
1 ATC-TTCTAAGGTACCGG-TTCGCCGTTGCGGCCTCAA-CCTTCCCT-TCAT
* * * ** * *
26728214 CTCTTC-ATA-GTACTGGTTTGTTGTTGCGGCCTCAACCTTTCCTATCAC
1 ATCTTCTA-AGGTACCGGTTCGCCGTTGCGGCCTCAACCTTCCCT-TCAT
* * ** * * *
26728262 ATCTTTTTAGGTACCGGGTTCATCGTTGCGGTCTCAACCTTTCCTTTCAC
1 ATCTTCTAAGGTACC-GGTTCGCCGTTGCGGCCTCAACC-TTCCCTTCAT
*
26728312 ATCTTTTAAGGTACCG
1 ATCTTCTAAGGTACCG
26728328 TATTTACCGT
Statistics
Matches: 534, Mismatches: 138, Indels: 81
0.71 0.18 0.11
Matches are distributed among these distances:
48 28 0.05
49 180 0.34
50 239 0.45
51 82 0.15
52 5 0.01
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (48 bp):
ATCTTCTAAGGTACCGGTTCGCCGTTGCGGCCTCAACCTTCCCTTCAT
Found at i:26727637 original size:99 final size:97
Alignment explanation
Indices: 26727507--26728308 Score: 482
Period size: 99 Copynumber: 8.1 Consensus size: 97
26727497 GCATTAAACT
* * * * * * *
26727507 TTCCCTTTACATCTTCATGGTATCGGATTCGCTGTTGCGACCTCAATCC-TACCAATCGCATCTT
1 TTCCCTTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAA-CCTTTCCCATCACATCTT
* *
26727571 CTAAGGTACCAGGCTCGTCGTTGCGGCCTCAACC
65 CTAAGGTACC-GGTTCGTCGTCGCGGCCTCAACC
* ** * **
26727605 TTCCCTTTTATATCTTCGTGGTACCGGGTTCGCCGTCACGACCTCAACCTTTCCCTTCGTATCTT
1 TTCCC-TTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATCTT
* * * **
26727670 CTAAGATATCGAATTCG-CTGTCGCGGCCTTCATTC
65 CTAAGGTACCG-GTTCGTC-GTCGCGGCC-TCAACC
* * * * * * *
26727705 TTCCCTTCATCTTTTCATGGTACCGGGTTCGCCGCTGCGGCCTCAACTTTTCCTATCACATCTTC
1 TTCCCTTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATCTTC
* ** *
26727770 TTAA-GTATCGGATTCACCGTCGCGGCTTCAATCC
66 -TAAGGTACCGG-TTCGTCGTCGCGGCCTCAA-CC
* * *** *
26727804 TTCCCTTCATCTCTTCATGGTACTATGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTC
1 TTCCCTTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATCTTC
* *
26727869 TTAGGTACCAGGTTCGTCGTTGCGGCCTCAACC
66 TAAGGTACC-GGTTCGTCGTCGCGGCCTCAACC
* * * * * * * * **
26727902 TTTCCTTTTGTATCTTCTTAGGTACCGGATTCGTCGTAGCCG-CCTCAATCTTTCCCTTCATTTC
1 -TTCCCTTTATATCTTCAT-GGTACCGGGTTCGCCGTTG-CGACCTCAACCTTTCCCATCACATC
* * * * *
26727966 TTC-ATGGTACTGGGTTCGCCGTTGCGGCCTTAACC
63 TTCTAAGGTAC-CGGTTCGTCGTCGCGGCCTCAACC
* * * * * * * * *
26728001 TTTCTCATTACATCTTCTTAGGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTACATCT
1 -TTCCCTTTATATCTTCAT-GGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATC-
* * *
26728066 TTTTAAGGTACCGGATTCGTCGTCGCGACCTCAATCT
63 TTCTAAGGTACCGG-TTCGTCGTCGCGGCCTCAA-CC
* * ** * * * *
26728103 TTCCCTTCATCTCTTCATGGTACTAGGTTCACCGTTGCGACCTCAACTTTTCCCTTTACATCTTT
1 TTCCCTTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATC-TT
* * * * * *
26728168 TTAAGGTATCGGATTTGCCGTTGCGGCCTTAATCC
65 CTAAGGTACCGG-TTCGTCGTCGCGGCCTCAA-CC
** * * * * ** * *
26728203 TTCCCTGTCCTCTCTTCATAGTA-CTGGTTTGTTGTTGCGGCCTCAACCTTTCCTATCACATCTT
1 TTCCCT-TTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATCTT
* * * * *
26728267 TTTAGGTACCGGGTTCATCGTTGCGGTCTCAACC
65 CTAAGGTACC-GGTTCGTCGTCGCGGCCTCAACC
*
26728301 TTTCCTTT
1 TTCCCTTT
26728309 CACATCTTTT
Statistics
Matches: 550, Mismatches: 132, Indels: 45
0.76 0.18 0.06
Matches are distributed among these distances:
97 1 0.00
98 25 0.05
99 317 0.58
100 157 0.29
101 49 0.09
102 1 0.00
ACGTcount: A:0.15, C:0.31, G:0.17, T:0.37
Consensus pattern (97 bp):
TTCCCTTTATATCTTCATGGTACCGGGTTCGCCGTTGCGACCTCAACCTTTCCCATCACATCTTC
TAAGGTACCGGTTCGTCGTCGCGGCCTCAACC
Found at i:26727893 original size:149 final size:148
Alignment explanation
Indices: 26727505--26728196 Score: 610
Period size: 149 Copynumber: 4.6 Consensus size: 148
26727495 TGGCATTAAA
* * * * * * **
26727505 CTTTCCCTTTA-CATCTTCATGGTA-TCGGATTCGCTGTTGCGACCTCAATCC-TACCAATCGCA
1 CTTTCCCTTCATC-TCTTCATGGTACTAGG-TTCGCCGTTGCGGCCTCAA-CCTTTCCCATTACA
* * * * * * * *
26727567 TCTTCTAAGGTACCAGGCTCGTCGTTGCGGCCTCAACCTTCCCTTTTATATCTTCGT-GGTACCG
63 TCTTCTTAGGTACCGGGTTCGTCGTTGCGGCCTCAACTTTTCC-TTTACATCTTCTTAAGTACCG
* * * * *
26727631 GGTTCGCCGTCACGACCTCAAC
127 GATTCGTCGTCGCGGCCTCAAT
* * * * * * * * **
26727653 CTTTCCCTTCGTATCTTCTAAGATA-TCGAATTCGCTGTCGCGGCCTTCATTC-TTCCC-TT-CA
1 CTTTCCCTTCATCTCTTC-ATGGTACTAG-GTTCGCCGTTGCGGCC-TCAACCTTTCCCATTACA
* * * *
26727714 TCTT-TTCATGGTACCGGGTTCGCCGCTGCGGCCTCAACTTTTCCTATCACATCTTCTTAAGTAT
63 TCTTCTT-A-GGTACCGGGTTCGTCGTTGCGGCCTCAACTTTTCCT-TTACATCTTCTTAAGTAC
** *
26727778 CGGATTCACCGTCGCGGCTTCAAT
125 CGGATTCGTCGTCGCGGCCTCAAT
* * *
26727802 CCTTCCCTTCATCTCTTCATGGTACTATGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCT
1 CTTTCCCTTCATCTCTTCATGGTACTAGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCT
* * ** *
26727867 TCTTAGGTACCAGGTTCGTCGTTGCGGCCTCAACCTTTCCTTTTGTATCTTCTTAGGTACCGGAT
66 TCTTAGGTACCGGGTTCGTCGTTGCGGCCTCAACTTTTCC-TTTACATCTTCTTAAGTACCGGAT
* *
26727932 TCGTCGTAGCCGCCTCAAT
130 TCGTCGTCGCGGCCTCAAT
* * * *
26727951 CTTTCCCTTCATTTCTTCATGGTACTGGGTTCGCCGTTGCGGCCTTAACCTTTCTCATTACATCT
1 CTTTCCCTTCATCTCTTCATGGTACTAGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCT
* * *
26728016 TCTTAGGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTACATCTTTTTAAGGTACCGGA
66 TCTTAGGTACCGGGTTCGTCGTTGCGGCCTCAA-CTTTTCCTTTACATCTTCTTAA-GTACCGGA
*
26728081 TTCGTCGTCGCGACCTCAAT
129 TTCGTCGTCGCGGCCTCAAT
* * * *
26728101 CTTTCCCTTCATCTCTTCATGGTACTAGGTTCACCGTTGCGACCTCAACTTTTCCCTTTACATCT
1 CTTTCCCTTCATCTCTTCATGGTACTAGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCT
* * * * *
26728166 TTTTAAGGTATCGGATTTGCCGTTGCGGCCT
66 TCTT-AGGTACCGGGTTCGTCGTTGCGGCCT
26728197 TAATCCTTCC
Statistics
Matches: 439, Mismatches: 88, Indels: 31
0.79 0.16 0.06
Matches are distributed among these distances:
146 1 0.00
147 12 0.03
148 75 0.17
149 225 0.51
150 101 0.23
151 25 0.06
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.36
Consensus pattern (148 bp):
CTTTCCCTTCATCTCTTCATGGTACTAGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCT
TCTTAGGTACCGGGTTCGTCGTTGCGGCCTCAACTTTTCCTTTACATCTTCTTAAGTACCGGATT
CGTCGTCGCGGCCTCAAT
Found at i:26736562 original size:29 final size:29
Alignment explanation
Indices: 26736520--26736577 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26736510 AACAAAATAG
*
26736520 TTAAGCAGATAAATAAATACATGCAAATT
1 TTAAGCAGATAAATAAATACATGAAAATT
26736549 TTAAGCAGATAAATAAATACATGAAAATT
1 TTAAGCAGATAAATAAATACATGAAAATT
26736578 GAACATCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.09, G:0.10, T:0.28
Consensus pattern (29 bp):
TTAAGCAGATAAATAAATACATGAAAATT
Found at i:26736789 original size:29 final size:29
Alignment explanation
Indices: 26736757--26736822 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
26736747 GAAGTCGAGC
*
26736757 TTTTGGAAAATTGAGGGTAAAATGGTAAT
1 TTTTGGAAAATCGAGGGTAAAATGGTAAT
*** *
26736786 TTTTGGATGCTCGAGGGTAAAATGGTGAT
1 TTTTGGAAAATCGAGGGTAAAATGGTAAT
26736815 TTTTGGAA
1 TTTTGGAA
26736823 GTTAAAGGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.36
Consensus pattern (29 bp):
TTTTGGAAAATCGAGGGTAAAATGGTAAT
Found at i:26736831 original size:29 final size:29
Alignment explanation
Indices: 26736770--26736965 Score: 166
Period size: 29 Copynumber: 6.7 Consensus size: 29
26736760 TGGAAAATTG
* * **
26736770 AGGG-TAAAATGGTAATTTTTGGATGCTCG
1 AGGGCTAAAAT-GTAATTTTTGGAAGTTTA
* *
26736799 AGGG-TAAAATGGTGATTTTTGGAAGTTAA
1 AGGGCTAAAAT-GTAATTTTTGGAAGTTTA
**
26736828 AGGGC-AAAAGTGTAATTTTTTAAAGTTTA
1 AGGGCTAAAA-TGTAATTTTTGGAAGTTTA
*
26736857 AGGGCAAAAATGTAA-TTTTGAGAAGTTTA
1 AGGGCTAAAATGTAATTTTTG-GAAGTTTA
* *
26736886 AGGGCTTAAATGTAATTTTTGAAAAGTTTA
1 AGGGCTAAAATGTAATTTTTG-GAAGTTTA
* * *
26736916 AGGGTTAAAATGTAATTTTTAGAAATTTTA
1 AGGGCTAAAATGTAATTTTT-GGAAGTTTA
* *
26736946 GGGGTTAAAATGTAATTTTT
1 AGGGCTAAAATGTAATTTTT
26736966 AGAAAGCTTA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
28 4 0.03
29 76 0.53
30 62 0.43
31 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.38
Consensus pattern (29 bp):
AGGGCTAAAATGTAATTTTTGGAAGTTTA
Found at i:26736913 original size:30 final size:30
Alignment explanation
Indices: 26736813--26736970 Score: 141
Period size: 30 Copynumber: 5.3 Consensus size: 30
26736803 TAAAATGGTG
* * *
26736813 ATTTTTG-GAAGTTAAAGGGC-AAAAGTGTA
1 ATTTTTGAAAAGTTTAAGGGCTTAAA-TGTA
* **
26736842 ATTTTT-TAAAGTTTAAGGGCAAAAATGTA
1 ATTTTTGAAAAGTTTAAGGGCTTAAATGTA
*
26736871 A-TTTTGAGAAGTTTAAGGGCTTAAATGTA
1 ATTTTTGAAAAGTTTAAGGGCTTAAATGTA
26736900 ATTTTTGAAAAGTTTAAGGG-TTAAAATGTA
1 ATTTTTGAAAAGTTTAAGGGCTT-AAATGTA
* *
26736930 ATTTTT-AGAAA-TTTTAGGGGTTAAAATGTA
1 ATTTTTGA-AAAGTTTAAGGGCTT-AAATGTA
26736960 ATTTTTAGAAA
1 ATTTTT-GAAA
26736971 GCTTAGGGGT
Statistics
Matches: 112, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
28 4 0.04
29 52 0.46
30 53 0.47
31 2 0.02
32 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (30 bp):
ATTTTTGAAAAGTTTAAGGGCTTAAATGTA
Done.