Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032250.1 Gossypioides kirkii chromosome KI_08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39602670
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 500 characters in sequence are not A, C, G, or T
File 88 of 125
Found at i:27035334 original size:18 final size:18
Alignment explanation
Indices: 27035301--27035336 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
27035291 AATGAATATT
* *
27035301 TTTTTTTTAGATTTTTAA
1 TTTTTTTTAAAATTTTAA
27035319 TTTTTTTTAAAATTTTAA
1 TTTTTTTTAAAATTTTAA
27035337 ATTAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTTTTAAAATTTTAA
Found at i:27036781 original size:16 final size:17
Alignment explanation
Indices: 27036760--27036796 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
27036750 CATGTTAATT
27036760 TTTATTTT-TTTAAATA
1 TTTATTTTATTTAAATA
*
27036776 TTTATTTTATTTTAATA
1 TTTATTTTATTTAAATA
27036793 TTTA
1 TTTA
27036797 ATAATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTTATTTAAATA
Found at i:27036794 original size:17 final size:16
Alignment explanation
Indices: 27036754--27036796 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
27036744 TTTGTCCATG
*
27036754 TTAATTTTTATTTTTT
1 TTAATATTTATTTTTT
*
27036770 TAAATATTTATTTTATT
1 TTAATATTTATTTT-TT
27036787 TTAATATTTA
1 TTAATATTTA
27036797 ATAATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTAATATTTATTTTTT
Found at i:27039741 original size:40 final size:38
Alignment explanation
Indices: 27039673--27039766 Score: 102
Period size: 37 Copynumber: 2.4 Consensus size: 38
27039663 ACCAGAATGG
* *
27039673 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
*
27039713 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGA
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* *
27039750 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
27039767 AATCTATCCG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
37 22 0.47
40 22 0.47
41 3 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:27039755 original size:37 final size:38
Alignment explanation
Indices: 27039705--27039808 Score: 102
Period size: 37 Copynumber: 2.7 Consensus size: 38
27039695 TTCGAAGCAA
* *
27039705 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAGTGATACCCAGTGTCTCATCGAACCTAGCCGAAG
** * *
27039742 TAAAGTGATACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAGTGATACCCAGTGTCTCATCGAACCTAGCCGAAG
* *
27039780 TAAAATAATGACACCTAGTGTCTCATCGA
1 TAAAGTGAT-AC-CC-AGTGTCTCATCGA
27039809 CTCAAGGTCG
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
37 22 0.42
38 16 0.30
39 2 0.04
40 2 0.04
41 11 0.21
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (38 bp):
TAAAGTGATACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:27039938 original size:6 final size:6
Alignment explanation
Indices: 27039911--27039949 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
27039901 ACAATTCATA
* * *
27039911 TCACTT TCAGTT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
27039950 ATTTTGCCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.21, C:0.31, G:0.03, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:27042822 original size:16 final size:18
Alignment explanation
Indices: 27042803--27042840 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
27042793 ATATAAATTA
27042803 ATAATAATATT-AT-AAT
1 ATAATAATATTCATAAAT
27042819 ATAATAATATTCATAAAT
1 ATAATAATATTCATAAAT
27042837 ATAA
1 ATAA
27042841 AAGAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.55
17 2 0.10
18 7 0.35
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATAATATTCATAAAT
Found at i:27050003 original size:16 final size:18
Alignment explanation
Indices: 27049984--27050021 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
27049974 ATATAAATTA
27049984 ATAATAATATT-AT-AAT
1 ATAATAATATTCATAAAT
27050000 ATAATAATATTCATAAAT
1 ATAATAATATTCATAAAT
27050018 ATAA
1 ATAA
27050022 ATGAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.55
17 2 0.10
18 7 0.35
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATAATATTCATAAAT
Found at i:27058097 original size:88 final size:88
Alignment explanation
Indices: 27057973--27058181 Score: 273
Period size: 88 Copynumber: 2.4 Consensus size: 88
27057963 ATTAATTCTT
* * * * * *
27057973 TATTTTTTCACTCAATTCGGTACATGAACTACCAAAATGCATTAAAAA-GTCTTCAATA-TTTTT
1 TATTTTTTTACTCAATTGGGTACTTGAACTACCAAAATACATCAAAAAGGTCCTCAA-ACTTTTT
27058036 CA-AAAAAGCAATTAAGCCCCTG-
65 CATAAAAAGCAATTAAGCCCCTGC
* **
27058058 TATTTTTTTCGCATTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGGTCCTCAAACTTT
1 TATTTTTTT---ACTCAATTGGGTACTTGAACTACCAAAATACATCAAAAAGGTCCTCAAACTTT
27058123 TTCATAAAAAGCAATTAAGCCCCTGC
63 TTCATAAAAAGCAATTAAGCCCCTGC
27058149 TATTTTTTTACTCAATTGGGTACTTGAACTACC
1 TATTTTTTTACTCAATTGGGTACTTGAACTACC
27058182 CTTAATTTGT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
85 8 0.08
88 54 0.51
89 14 0.13
90 20 0.19
91 9 0.09
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (88 bp):
TATTTTTTTACTCAATTGGGTACTTGAACTACCAAAATACATCAAAAAGGTCCTCAAACTTTTTC
ATAAAAAGCAATTAAGCCCCTGC
Found at i:27058282 original size:32 final size:30
Alignment explanation
Indices: 27058246--27058326 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 30
27058236 GCAAAAATGA
27058246 TAAAAAAATAAAAATATATATTAAATTTTAAT
1 TAAAAAAATAAAAAT-TATATTAAATTTT-AT
* *
27058278 TAAAAAATTATAAGAACTAT-TTAAATTTTAT
1 TAAAAAA--ATAAAAATTATATTAAATTTTAT
*
27058309 T-AAAAATTAAAAATTATA
1 TAAAAAAATAAAAATTATA
27058327 ACAATCGTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 8 0.20
30 5 0.12
31 3 0.07
32 16 0.39
33 3 0.07
34 6 0.15
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (30 bp):
TAAAAAAATAAAAATTATATTAAATTTTAT
Found at i:27058283 original size:31 final size:29
Alignment explanation
Indices: 27058248--27058326 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 29
27058238 AAAAATGATA
27058248 AAAAAATAAAAATATATATTAAATTTTAATT
1 AAAAAATAAAAAT-TATATTAAATTTT-ATT
*
27058279 AAAAAATTATAAGAACTAT-TTAAATTTTATT
1 AAAAAA-TA-AA-AATTATATTAAATTTTATT
*
27058310 AAAAATTAAAAATTATA
1 AAAAAATAAAAATTATA
27058327 ACAATCGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
28 5 0.12
29 2 0.05
30 2 0.05
31 14 0.34
32 11 0.27
33 5 0.12
34 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (29 bp):
AAAAAATAAAAATTATATTAAATTTTATT
Found at i:27058695 original size:34 final size:34
Alignment explanation
Indices: 27058651--27058718 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
27058641 AAGTTGAGAT
*
27058651 TTGACCCTCCATGAAAATTGTAATACCCTATACC
1 TTGACCCTCCATGAAAATTGTAACACCCTATACC
* * *
27058685 TTGACTCTCCATGAGAATTGTAACACCTTATACC
1 TTGACCCTCCATGAAAATTGTAACACCCTATACC
27058719 CGACCCAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (34 bp):
TTGACCCTCCATGAAAATTGTAACACCCTATACC
Found at i:27062829 original size:23 final size:24
Alignment explanation
Indices: 27062801--27062846 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
27062791 AATAAACTAA
27062801 TATTTTT-TATTAAAAATATCAAT
1 TATTTTTATATTAAAAATATCAAT
27062824 TATTTTTACTATTAAAAATATCA
1 TATTTTTA-TATTAAAAATATCA
27062847 TCGATTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (24 bp):
TATTTTTATATTAAAAATATCAAT
Found at i:27063995 original size:17 final size:18
Alignment explanation
Indices: 27063970--27064003 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
27063960 AACAAGGACA
27063970 TTTAGAATTTAACTTAAT
1 TTTAGAATTTAACTTAAT
*
27063988 TTTA-AATTTAATTTAA
1 TTTAGAATTTAACTTAA
27064004 CAAAATTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTAGAATTTAACTTAAT
Found at i:27070113 original size:14 final size:16
Alignment explanation
Indices: 27070101--27070130 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
27070091 AACTTAATTA
27070101 TCTAAAAAAAATTAAC
1 TCTAAAAAAAATTAAC
27070117 TCT-AAAAAAATTAA
1 TCTAAAAAAAATTAA
27070131 TTCGATAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 11 0.79
16 3 0.21
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (16 bp):
TCTAAAAAAAATTAAC
Found at i:27076239 original size:3 final size:3
Alignment explanation
Indices: 27076231--27076260 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
27076221 TTCCTCTCCA
27076231 TGG TGG TGG TGG TGG TGG TGGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG T-GG TGG TGG TG
27076261 ATGCTCTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (3 bp):
TGG
Found at i:27076312 original size:27 final size:27
Alignment explanation
Indices: 27076280--27076388 Score: 200
Period size: 27 Copynumber: 4.0 Consensus size: 27
27076270 CTCATGATCC
27076280 TCTTCATCATGGTGTCCGTGGTCATGG
1 TCTTCATCATGGTGTCCGTGGTCATGG
27076307 TCTTCATCATGGTGTCCGTGGTCATGG
1 TCTTCATCATGGTGTCCGTGGTCATGG
*
27076334 TCTTCATCATGGTGTTCGTGGTCATGG
1 TCTTCATCATGGTGTCCGTGGTCATGG
*
27076361 TCTTCATCATGGTGTTCGTGGTCATGG
1 TCTTCATCATGGTGTCCGTGGTCATGG
27076388 T
1 T
27076389 GATCTGGCTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.11, C:0.20, G:0.29, T:0.39
Consensus pattern (27 bp):
TCTTCATCATGGTGTCCGTGGTCATGG
Found at i:27076360 original size:15 final size:15
Alignment explanation
Indices: 27076286--27076389 Score: 73
Period size: 15 Copynumber: 7.5 Consensus size: 15
27076276 ATCCTCTTCA
*
27076286 TCATGGTGTCCGTGG
1 TCATGGTGTTCGTGG
* *
27076301 TCATGGTCTTC---A
1 TCATGGTGTTCGTGG
*
27076313 TCATGGTGTCCGTGG
1 TCATGGTGTTCGTGG
* *
27076328 TCATGGTCTTC---A
1 TCATGGTGTTCGTGG
27076340 TCATGGTGTTCGTGG
1 TCATGGTGTTCGTGG
* *
27076355 TCATGGTCTTC---A
1 TCATGGTGTTCGTGG
27076367 TCATGGTGTTCGTGG
1 TCATGGTGTTCGTGG
27076382 TCATGGTG
1 TCATGGTG
27076390 ATCTGGCTTC
Statistics
Matches: 65, Mismatches: 15, Indels: 18
0.66 0.15 0.18
Matches are distributed among these distances:
12 29 0.45
15 36 0.55
ACGTcount: A:0.11, C:0.19, G:0.32, T:0.38
Consensus pattern (15 bp):
TCATGGTGTTCGTGG
Found at i:27076450 original size:63 final size:63
Alignment explanation
Indices: 27076379--27076502 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
27076369 ATGGTGTTCG
* * * * *
27076379 TGGTCATGGTGATCTGGCTTCATAAAATTTACATGATGCTTAGACACGGTGCCATCATCGTCC
1 TGGTCATGGTGATCAGCCATCAAAAAATTTACATGATGCTTAGACACGGCGCCATCATCGTCC
* * * *
27076442 TGGTCATGGTGATGAGCCATGAAAAAATTTACATGCTGCTTAGACTCGGCGCCATCATCGT
1 TGGTCATGGTGATCAGCCATCAAAAAATTTACATGATGCTTAGACACGGCGCCATCATCGT
27076503 GAAAACTGCC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (63 bp):
TGGTCATGGTGATCAGCCATCAAAAAATTTACATGATGCTTAGACACGGCGCCATCATCGTCC
Found at i:27082923 original size:35 final size:34
Alignment explanation
Indices: 27082820--27082929 Score: 102
Period size: 35 Copynumber: 3.2 Consensus size: 34
27082810 CGTTAGGTTA
* *
27082820 TATATATATAGTTTATT-TTTTATACATGGTATG
1 TATATATATAGTTTATTCTTTTATATATAGTATG
* * *
27082853 TGTATAT-TAGTCATATATCTTCCTTAAAT-TA-TATG
1 TATATATATAGT-TTAT-TCTT--TTATATATAGTATG
27082888 TATATATATAGTTTATTCTTTATATATATAGTATG
1 TATATATATAGTTTATTCTTT-TATATATAGTATG
27082923 TATATAT
1 TATATAT
27082930 TCACCATACA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
32 5 0.08
33 13 0.22
34 7 0.12
35 26 0.43
36 5 0.08
37 4 0.07
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (34 bp):
TATATATATAGTTTATTCTTTTATATATAGTATG
Found at i:27083014 original size:2 final size:2
Alignment explanation
Indices: 27082958--27082997 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
27082948 TTCCTTAAAT
27082958 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27082998 GCTTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27101346 original size:34 final size:34
Alignment explanation
Indices: 27101284--27101355 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
27101274 AACAATAAAA
* *
27101284 TAAATTAAAATTTATAATATTATTAAAATATCAC
1 TAAATTAAAATTTATAATAATATAAAAATATCAC
* *
27101318 TAAATTAAACATTTAT-TTAATATAAAAATATCAT
1 TAAATTAAA-ATTTATAATAATATAAAAATATCAC
27101352 TAAA
1 TAAA
27101356 ATTCGACCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 27 0.82
35 6 0.18
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (34 bp):
TAAATTAAAATTTATAATAATATAAAAATATCAC
Found at i:27102613 original size:81 final size:81
Alignment explanation
Indices: 27102528--27102676 Score: 244
Period size: 81 Copynumber: 1.8 Consensus size: 81
27102518 ATTTATAGGA
27102528 AAAACCCCACTAAAGGTCAGAGCATTAGCGGCGTTTACGAAAAAACGCCGCTAAAGGTCAGAGCA
1 AAAACCCCACTAAAGGTCAGAGCATTAGCGGCGTTTACGAAAAAACGCCGCTAAAGGTCAGAGCA
27102593 TTAGCGGCATTATTAT
66 TTAGCGGCATTATTAT
** * ** *
27102609 AAAACGTCGCTAAAGGTCAGAGCATTAGCGGCGTTTATTAGAAAACGCCGCTAAAGGTCAGAGCA
1 AAAACCCCACTAAAGGTCAGAGCATTAGCGGCGTTTACGAAAAAACGCCGCTAAAGGTCAGAGCA
27102674 TTA
66 TTA
27102677 ATGGCGTTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (81 bp):
AAAACCCCACTAAAGGTCAGAGCATTAGCGGCGTTTACGAAAAAACGCCGCTAAAGGTCAGAGCA
TTAGCGGCATTATTAT
Found at i:27102624 original size:40 final size:41
Alignment explanation
Indices: 27102459--27102708 Score: 244
Period size: 41 Copynumber: 6.1 Consensus size: 41
27102449 TAACGTCACA
* * *
27102459 AAAGGT-AAAGCAATAGCGGCGTTT-TTACATAAACGCCGC-
1 AAAGGTCAGAGCATTAGCGGCGTTTATTA-AAAAACGCCGCT
* * * * * *
27102498 AAATGT-AAAGCAATAGCGGCATTTA-TAGGAAAAACCCCACT
1 AAAGGTCAGAGCATTAGCGGCGTTTATTA--AAAAACGCCGCT
**
27102539 AAAGGTCAGAGCATTAGCGGCGTTTACGAAAAAACGCCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATTAAAAAACGCCGCT
* * *
27102580 AAAGGTCAGAGCATTAGCGGC-ATTATTATAAAACGTCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATTAAAAAACGCCGCT
*
27102620 AAAGGTCAGAGCATTAGCGGCGTTTATTAGAAAACGCCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATTAAAAAACGCCGCT
** *
27102661 AAAGGTCAGAGCATTAATGGCGTTTA-TAGGAAAAACGCCACT
1 AAAGGTCAGAGCATTAGCGGCGTTTATTA--AAAAACGCCGCT
27102703 AAAGGT
1 AAAGGT
27102709 TAAGCAATAA
Statistics
Matches: 178, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
39 24 0.13
40 45 0.25
41 76 0.43
42 32 0.18
43 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAGGTCAGAGCATTAGCGGCGTTTATTAAAAAACGCCGCT
Found at i:27103052 original size:31 final size:29
Alignment explanation
Indices: 27103015--27103100 Score: 84
Period size: 31 Copynumber: 2.9 Consensus size: 29
27103005 GATTACATCA
27103015 AAATTAAAGTTTCATGTATA-CATGTGAACC
1 AAATTAAAG-TTCATGTATATCAT-TGAACC
* * *
27103045 ACAATTAAAAATTCATGTGTATCATTGCACC
1 A-AATT-AAAGTTCATGTATATCATTGAACC
* *
27103076 AAATTAAAGTTCATATATATAATTG
1 AAATTAAAGTTCATGTATATCATTG
27103101 CACATTAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
29 16 0.35
30 5 0.11
31 19 0.41
32 6 0.13
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (29 bp):
AAATTAAAGTTCATGTATATCATTGAACC
Found at i:27103100 original size:29 final size:29
Alignment explanation
Indices: 27103015--27103103 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
27103005 GATTACATCA
*
27103015 AAATTAAAGTTTCATGTATA-CATGTGAACC
1 AAATTAAAG-TTCATGTATATCAT-TGCACC
* *
27103045 ACAATTAAAAATTCATGTGTATCATTGCACC
1 A-AATT-AAAGTTCATGTATATCATTGCACC
* *
27103076 AAATTAAAGTTCATATATATAATTGCAC
1 AAATTAAAGTTCATGTATATCATTGCAC
27103104 ATTAAATCAA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
29 19 0.39
30 5 0.10
31 19 0.39
32 6 0.12
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTCATGTATATCATTGCACC
Found at i:27104742 original size:18 final size:18
Alignment explanation
Indices: 27104719--27104755 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
27104709 AACTCTTCAT
*
27104719 TCATTTCTAAATTCCTAA
1 TCATTTCTAAATCCCTAA
27104737 TCATTTCTAAATCCCTAA
1 TCATTTCTAAATCCCTAA
27104755 T
1 T
27104756 TTCCACCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.43
Consensus pattern (18 bp):
TCATTTCTAAATCCCTAA
Found at i:27104911 original size:18 final size:18
Alignment explanation
Indices: 27104876--27104912 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27104866 GATTCCTTAT
**
27104876 TCATTTCTAAATTTCTAA
1 TCATTTCTAAATCCCTAA
27104894 TCATTTCTAAATCCCTAA
1 TCATTTCTAAATCCCTAA
27104912 T
1 T
27104913 TTCCACCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.00, T:0.46
Consensus pattern (18 bp):
TCATTTCTAAATCCCTAA
Found at i:27106420 original size:43 final size:43
Alignment explanation
Indices: 27106372--27106524 Score: 207
Period size: 43 Copynumber: 3.6 Consensus size: 43
27106362 ATCTGTTAAT
*
27106372 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGACAATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGACCATGTTC
* * ** *
27106415 TTTAGCGGCATTTGTGGGAAAAGCGCTTCTAAAGACCATATTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGACCATGTTC
* * *
27106458 TTTAGTGGCGTTTGTGAGGAAAGCGCCGCTAAAAACCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGACCATGTTC
* *
27106501 TTTAGCGACGTTTGTGGGAAAAGC
1 TTTAGCGGCGTTTGTGAGAAAAGC
27106525 TTCTATGTTT
Statistics
Matches: 92, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGACCATGTTC
Found at i:27106614 original size:107 final size:107
Alignment explanation
Indices: 27106425--27106620 Score: 277
Period size: 107 Copynumber: 1.8 Consensus size: 107
27106415 TTTAGCGGCA
* ** * *
27106425 TTTGTGGGAAAAGCGCTTCTAAAGACCATATTCTTTAGTGGCGTTTGTGAGGAAAGCGCCGCTAA
1 TTTGTGGGAAAAGCGCGTCTAAAGACCATATTCTTTAGCAGCATTTGTGAGGAAAGCGCAGCTAA
*
27106490 AAACCATGTTCTTTAGCGACGTTTGTGGGAAAAGCTTCTATG
66 AAACCATGTTCTATAGCGACGTTTGTGGGAAAAGCTTCTATG
* * *
27106532 TTTGTGGGAAAAGCGTCGT-TAAAGACCATTTTCTTTAGCAGCATTTGTGTGTAAAGCGCAGCTA
1 TTTGTGGGAAAAGCG-CGTCTAAAGACCATATTCTTTAGCAGCATTTGTGAGGAAAGCGCAGCTA
* *
27106596 AAGACCTTGTTCTATAGCGACGTTT
65 AAAACCATGTTCTATAGCGACGTTT
27106621 TCTCTAAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 75 0.97
108 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (107 bp):
TTTGTGGGAAAAGCGCGTCTAAAGACCATATTCTTTAGCAGCATTTGTGAGGAAAGCGCAGCTAA
AAACCATGTTCTATAGCGACGTTTGTGGGAAAAGCTTCTATG
Found at i:27110157 original size:22 final size:23
Alignment explanation
Indices: 27110109--27110160 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
27110099 TGATTTAAAC
*
27110109 AAATATTCATATTCATATAATTA
1 AAATATTCATAGTCATATAATTA
*
27110132 AAATATTCATAGT-GTATAA-TA
1 AAATATTCATAGTCATATAATTA
27110153 TAAATATT
1 -AAATATT
27110161 TATTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 12 0.46
23 12 0.46
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (23 bp):
AAATATTCATAGTCATATAATTA
Found at i:27110372 original size:24 final size:24
Alignment explanation
Indices: 27110345--27110392 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
27110335 ACATGTATGT
*
27110345 TTAATAAAATTAAAAATTATAATA
1 TTAACAAAATTAAAAATTATAATA
* **
27110369 TTAACAATATTAAATTTTATAATA
1 TTAACAAAATTAAAAATTATAATA
27110393 CTTTATATCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
TTAACAAAATTAAAAATTATAATA
Found at i:27115817 original size:22 final size:21
Alignment explanation
Indices: 27115773--27115817 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
27115763 TTAAAATCAC
* **
27115773 ATAAAAATCAAACATAATTAA
1 ATAAAAATCAAACAAAAGAAA
27115794 ATAAAAACTCAAACAAAAGAAA
1 ATAAAAA-TCAAACAAAAGAAA
27115816 AT
1 AT
27115818 GAGACTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.69, C:0.11, G:0.02, T:0.18
Consensus pattern (21 bp):
ATAAAAATCAAACAAAAGAAA
Found at i:27127025 original size:11 final size:11
Alignment explanation
Indices: 27126933--27127032 Score: 78
Period size: 11 Copynumber: 9.3 Consensus size: 11
27126923 TAATAAAAAA
*
27126933 TGAGAGTGAAC
1 TGAGAGTGAAT
27126944 TGAGA--GAAT
1 TGAGAGTGAAT
* * *
27126953 TAAGTGAGAAT
1 TGAGAGTGAAT
* *
27126964 TAAGAGAGAAT
1 TGAGAGTGAAT
* *
27126975 TGAGAGAGGAT
1 TGAGAGTGAAT
*
27126986 TGAGAATGAAT
1 TGAGAGTGAAT
* *
27126997 TGAGAGAGAGT
1 TGAGAGTGAAT
27127008 TGAGAGTGAAT
1 TGAGAGTGAAT
*
27127019 TGTGAGTGAAT
1 TGAGAGTGAAT
27127030 TGA
1 TGA
27127033 AAAAGTGTGA
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
9 6 0.08
11 65 0.92
ACGTcount: A:0.40, C:0.01, G:0.35, T:0.24
Consensus pattern (11 bp):
TGAGAGTGAAT
Found at i:27127029 original size:33 final size:33
Alignment explanation
Indices: 27126960--27127032 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
27126950 AATTAAGTGA
* *
27126960 GAATTAAGAGAGAATTGAGAGAGGATTGAGAAT
1 GAATTGAGAGAGAATTGAGAGAGAATTGAGAAT
* * * *
27126993 GAATTGAGAGAGAGTTGAGAGTGAATTGTGAGT
1 GAATTGAGAGAGAATTGAGAGAGAATTGAGAAT
27127026 GAATTGA
1 GAATTGA
27127033 AAAAGTGTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.25
Consensus pattern (33 bp):
GAATTGAGAGAGAATTGAGAGAGAATTGAGAAT
Found at i:27127032 original size:22 final size:22
Alignment explanation
Indices: 27126933--27127032 Score: 87
Period size: 22 Copynumber: 4.6 Consensus size: 22
27126923 TAATAAAAAA
* *
27126933 TGAGAGTGAACTGAGA--GAAT
1 TGAGAGAGAATTGAGAGTGAAT
* * * *
27126953 TAAGTGAGAATTAAGAGAGAAT
1 TGAGAGAGAATTGAGAGTGAAT
* *
27126975 TGAGAGAGGATTGAGAATGAAT
1 TGAGAGAGAATTGAGAGTGAAT
*
27126997 TGAGAGAGAGTTGAGAGTGAAT
1 TGAGAGAGAATTGAGAGTGAAT
* *
27127019 TGTGAGTGAATTGA
1 TGAGAGAGAATTGA
27127033 AAAAGTGTGA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 11 0.18
22 50 0.82
ACGTcount: A:0.40, C:0.01, G:0.35, T:0.24
Consensus pattern (22 bp):
TGAGAGAGAATTGAGAGTGAAT
Found at i:27129063 original size:89 final size:89
Alignment explanation
Indices: 27128945--27129154 Score: 241
Period size: 89 Copynumber: 2.4 Consensus size: 89
27128935 TTATGTTTTA
* * * * *
27128945 ACCCTTAAACTA-TCTAAAAATTATGTTTTGACTCTTAAACTTT-TCAAAATTATGTTTTTG-CA
1 ACCCCTAAACTATTC-AAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATG-TTTTGACA
*
27129007 CCTAAACTTTCT-AAAAAATCAAATTTG
64 -ATAAA-TTTCTCAAAAAATCAAATTTG
*
27129034 ACTCCTAAACTATTCAAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACAAT
1 ACCCCTAAACTATTCAAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACAAT
* *
27129099 AAATTTTTCAAAAATTCAAATTTG
66 AAATTTCTCAAAAAATCAAATTTG
* *
27129123 ACCCCCAAACT-TTCCAAAAAATATATTTTGAC
1 ACCCCTAAACTATT-CAAAAATTATATTTTGAC
27129155 AATAAATTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
88 6 0.06
89 84 0.81
90 14 0.13
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (89 bp):
ACCCCTAAACTATTCAAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACAAT
AAATTTCTCAAAAAATCAAATTTG
Found at i:27129071 original size:60 final size:61
Alignment explanation
Indices: 27128930--27129305 Score: 183
Period size: 59 Copynumber: 6.3 Consensus size: 61
27128920 AAGCTATCCA
* * * * * ** * *
27128930 AAAAATTATGTTTTAACCCTTAAACTATCT-AAAAATTATGTTTTGACTCTTAAACTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATTC
* *
27128990 -AAAATTATGTTTTTG-CACCTAAACTTTCTAAAAAATCA-AATTTGACTCCTAAACTATTC
1 AAAAATTAT-ATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATTC
* ** ** * *
27129049 AAAAATTATATTTTGACCCCTAAACTTTCT-AAAAATTATGTTTTGAC-AATAAATTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATTC
* * * * ** *
27129108 AAAAATTCA-AATTTGACCCCCAAACTTTCCAAAAAAT-ATATTTTGAC-AATAAA-TTTTCC
1 AAAAATT-ATATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATT-C
* * * * * *
27129167 AAAAATTCA-AATTTAACCCCTAAACTTTCT-AGAAAT-TTGAATTTGACCCCTAAA-TTTTCC
1 AAAAATT-ATATTTTGACCCCTAAACTTTCTAAAAAATCAT-AATTTGACTCCTAAACTATT-C
* * * * * * * ** * *
27129227 AAAAATTACAATTTAACCCCTTAATTTTC-CAAAATTTTTAATTTAACCCCTAAACT-TTCC
1 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATT-C
27129287 AAAAATTCATA-TTTGACCC
1 AAAAATT-ATATTTTGACCC
27129306 GGTTTTAATT
Statistics
Matches: 263, Mismatches: 38, Indels: 30
0.79 0.11 0.09
Matches are distributed among these distances:
58 10 0.04
59 132 0.50
60 116 0.44
61 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.38
Consensus pattern (61 bp):
AAAAATTATATTTTGACCCCTAAACTTTCTAAAAAATCATAATTTGACTCCTAAACTATTC
Found at i:27129109 original size:59 final size:59
Alignment explanation
Indices: 27128930--27129234 Score: 244
Period size: 59 Copynumber: 5.1 Consensus size: 59
27128920 AAGCTATCCA
* * * * * *
27128930 AAAAATTATGTTTTAACCCTTAAACTATCTAAAAATTATGTTTTGACTCTTAAACTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGAC-CATAAATTTTTC
* * * ** * * *
27128990 -AAAATTATGTTTTTG-CACCTAAACTTTCTAAAAAATCA-AATTTGACTCCTAAACTATTC
1 AAAAATTAT-ATTTTGACCCCTAAACTTTCT-AAAAATTATGTTTTGAC-CATAAATTTTTC
*
27129049 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACAATAAATTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACCATAAATTTTTC
* * * * * * *
27129108 AAAAATTCA-AATTTGACCCCCAAACTTTCCAAAAAATATATTTTGACAATAAATTTTCC
1 AAAAATT-ATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACCATAAATTTTTC
* * * * * *
27129167 AAAAATTCA-AATTTAACCCCTAAACTTTCTAGAAATT-TGAATTTGACCCCTAAATTTTCC
1 AAAAATT-ATATTTTGACCCCTAAACTTTCTAAAAATTATG-TTTTGA-CCATAAATTTTTC
27129227 AAAAATTA
1 AAAAATTA
27129235 CAATTTAACC
Statistics
Matches: 203, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
58 1 0.00
59 145 0.71
60 57 0.28
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (59 bp):
AAAAATTATATTTTGACCCCTAAACTTTCTAAAAATTATGTTTTGACCATAAATTTTTC
Found at i:27129153 original size:30 final size:30
Alignment explanation
Indices: 27128930--27129305 Score: 241
Period size: 30 Copynumber: 12.6 Consensus size: 30
27128920 AAGCTATCCA
* * * * *
27128930 AAAAATTATGTTTTAACCCTTAAACTATCT
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* * * *
27128960 AAAAATTATGTTTTGACTCTTAAACTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* * *
27128990 -AAAATTATGTTTTTG-CACCTAAACTTTCTA
1 AAAAATTAT-ATTTTGACCCCTAAACTTTC-C
* * *
27129020 AAAAATCA-AATTTGACTCCTAAACTATT-C
1 AAAAATTATATTTTGACCCCTAAACT-TTCC
*
27129049 AAAAATTATATTTTGACCCCTAAACTTTCT
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* ** * *
27129079 AAAAATTATGTTTTGA-CAATAAATTTTTC
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* *
27129108 AAAAATTCA-AATTTGACCCCCAAACTTTCC
1 AAAAATT-ATATTTTGACCCCTAAACTTTCC
* ** *
27129138 AAAAAATATATTTTGA-CAATAAATTTTCC
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* * *
27129167 AAAAATTCA-AATTTAACCCCTAAACTTTCT
1 AAAAATT-ATATTTTGACCCCTAAACTTTCC
* * *
27129197 AGAAATT-TGAATTTGACCCCTAAATTTTCC
1 AAAAATTAT-ATTTTGACCCCTAAACTTTCC
* * * * *
27129227 AAAAATTACAATTTAACCCCTTAATTTTCC
1 AAAAATTATATTTTGACCCCTAAACTTTCC
* * * *
27129257 AAAATTTTTAATTTAACCCCTAAACTTTCC
1 AAAAATTATATTTTGACCCCTAAACTTTCC
27129287 AAAAATTCATA-TTTGACCC
1 AAAAATT-ATATTTTGACCC
27129306 GGTTTTAATT
Statistics
Matches: 269, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
29 72 0.27
30 187 0.70
31 10 0.04
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.38
Consensus pattern (30 bp):
AAAAATTATATTTTGACCCCTAAACTTTCC
Found at i:27132804 original size:18 final size:18
Alignment explanation
Indices: 27132781--27132816 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
27132771 ACCAAATCTT
27132781 TATTTTAAATTTT-TTATA
1 TATTTT-AATTTTATTATA
27132799 TATTTTAATTTTATTATA
1 TATTTTAATTTTATTATA
27132817 CATGTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTTTAATTTTATTATA
Found at i:27139488 original size:58 final size:58
Alignment explanation
Indices: 27139424--27139543 Score: 206
Period size: 58 Copynumber: 2.1 Consensus size: 58
27139414 AAAAGGAGTT
*
27139424 GTTTATGAGTGTTATTT-AGGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTA
1 GTTTATGAGTGTT-TTTGAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTA
*
27139482 GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGTTTAAAAATATTTGGGTTTA
1 GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTA
27139540 GTTT
1 GTTT
27139544 GTTGATGAGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
57 3 0.05
58 56 0.95
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (58 bp):
GTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGATTTAAAAATATTTGGGTTTA
Found at i:27140647 original size:15 final size:16
Alignment explanation
Indices: 27140620--27140649 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
27140610 AATTTAGTTA
27140620 TTTATTATTAATTTAG
1 TTTATTATTAATTTAG
27140636 TTTATT-TTAATTTA
1 TTTATTATTAATTTA
27140650 ATTTTGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATTATTAATTTAG
Found at i:27140650 original size:20 final size:19
Alignment explanation
Indices: 27140610--27140658 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
27140600 AAGAAAGGTA
*
27140610 AATTTAGTTATTTATTATT
1 AATTTAGTTATTTAATATT
27140629 AATTTAGTTTATTTTAAT-TT
1 AATTTAG-TTA-TTTAATATT
*
27140649 AATTTTGTTA
1 AATTTAGTTA
27140659 GTAAGTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 10 0.38
20 11 0.42
21 5 0.19
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (19 bp):
AATTTAGTTATTTAATATT
Found at i:27140669 original size:21 final size:21
Alignment explanation
Indices: 27140643--27140682 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
27140633 TAGTTTATTT
27140643 TAATTTAATTTTGTTAGTAAG
1 TAATTTAATTTTGTTAGTAAG
*
27140664 TAATTTTATTTTGTTAGTA
1 TAATTTAATTTTGTTAGTA
27140683 GTAGTAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (21 bp):
TAATTTAATTTTGTTAGTAAG
Found at i:27141109 original size:16 final size:16
Alignment explanation
Indices: 27141063--27141111 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
27141053 TAAACCTAGC
27141063 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
27141079 T-A-TAATATA--AAAA
1 TAATTAAT-TACCAAAA
27141092 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
27141108 TAAT
1 TAAT
27141112 ATCTCCATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 5 0.18
14 7 0.25
15 7 0.25
16 9 0.32
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (16 bp):
TAATTAATTACCAAAA
Found at i:27141178 original size:30 final size:30
Alignment explanation
Indices: 27141144--27141244 Score: 98
Period size: 30 Copynumber: 3.4 Consensus size: 30
27141134 AAATGGTACA
*
27141144 AAATAAATATTTATTTTGTACTATTTTAGT
1 AAATAAATATTTATTTTGTACCATTTTAGT
* ** * * *
27141174 AAAT-AGT-GGTGTGTGGATACCATTTTAGT
1 AAATAAATATTTATTTTG-TACCATTTTAGT
*
27141203 ATATAAATATTTATTTTGTACCATTTTAGT
1 AAATAAATATTTATTTTGTACCATTTTAGT
*
27141233 AAATAACTATTT
1 AAATAAATATTT
27141245 TTGGTATTTA
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
28 4 0.08
29 16 0.31
30 28 0.54
31 4 0.08
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (30 bp):
AAATAAATATTTATTTTGTACCATTTTAGT
Found at i:27142486 original size:43 final size:43
Alignment explanation
Indices: 27142404--27142488 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
27142394 ATTAACATGT
* *
27142404 TAAATTATATTACTTGACTCGTGTTAATATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
** *
27142447 TAAATTATATTGTTTGACTCTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA
27142489 TTAATTGTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
Found at i:27143133 original size:21 final size:21
Alignment explanation
Indices: 27143088--27143133 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
27143078 CGAGCCGCCG
*
27143088 CAATACTCTACTCCTCTCGGG
1 CAATACTCTACTCCTCTCGGA
*
27143109 CAATACTTTACTCCTC-CGAGA
1 CAATACTCTACTCCTCTCG-GA
27143130 CAAT
1 CAAT
27143134 GAACCCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.26, C:0.35, G:0.11, T:0.28
Consensus pattern (21 bp):
CAATACTCTACTCCTCTCGGA
Found at i:27146755 original size:26 final size:28
Alignment explanation
Indices: 27146699--27146755 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
27146689 ATTCAATAAA
* *
27146699 TAAAATACGAATTTAAAAATATATCATAC
1 TAAAATAC-AATTTAAAAATATAACACAC
27146728 TAAAATA-AATTTAAAAATA-AACACAC
1 TAAAATACAATTTAAAAATATAACACAC
27146754 TA
1 TA
27146756 CCTTTCTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 12 0.46
29 7 0.27
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAATACAATTTAAAAATATAACACAC
Found at i:27146784 original size:7 final size:7
Alignment explanation
Indices: 27146759--27146813 Score: 58
Period size: 7 Copynumber: 7.7 Consensus size: 7
27146749 CACACTACCT
27146759 TTCTCTCC
1 TTCT-TCC
27146767 TTCTT-C
1 TTCTTCC
27146773 TTCTTCC
1 TTCTTCC
27146780 TTCTTCC
1 TTCTTCC
*
27146787 TTCTTCT
1 TTCTTCC
*
27146794 TTCTTTCT
1 TTC-TTCC
*
27146802 TTCTTCT
1 TTCTTCC
27146809 TTCTT
1 TTCTT
27146814 TCTTTCTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
6 6 0.14
7 27 0.61
8 11 0.25
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (7 bp):
TTCTTCC
Found at i:27146797 original size:4 final size:4
Alignment explanation
Indices: 27146790--27146843 Score: 76
Period size: 4 Copynumber: 13.5 Consensus size: 4
27146780 TTCTTCCTTC
27146790 TTCT TTCT TTCT TTC- TTCT TTCT TTCT TTCT TTCT TTCTT TTCT ATT-T
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC-T TTCT -TTCT
27146838 TTCT TT
1 TTCT TT
27146844 TCTTCTTCTG
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
3 5 0.11
4 35 0.76
5 6 0.13
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:27146840 original size:13 final size:13
Alignment explanation
Indices: 27146770--27146847 Score: 79
Period size: 13 Copynumber: 5.8 Consensus size: 13
27146760 TCTCTCCTTC
*
27146770 TTCTTCTTCCTTCT
1 TTCTT-TTCTTTCT
*
27146784 TCCTTCTTCTTTCT
1 TTCTT-TTCTTTCT
27146798 TTCTTTCTTCTTTCT
1 TTC-TT-TTCTTTCT
27146813 TTC-TTTCTTTCT
1 TTCTTTTCTTTCT
27146825 TTCTTTTCTATT-T
1 TTCTTTTCT-TTCT
27146838 TTCTTTTCTT
1 TTCTTTTCTT
27146848 CTTCTGCCTG
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
12 12 0.21
13 16 0.28
14 16 0.28
15 14 0.24
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.72
Consensus pattern (13 bp):
TTCTTTTCTTTCT
Found at i:27154452 original size:29 final size:29
Alignment explanation
Indices: 27154420--27154626 Score: 162
Period size: 29 Copynumber: 7.1 Consensus size: 29
27154410 AAAAATGAGG
*
27154420 TTTTGG-AAAGTTCAAGGGTAAAATGGTAA
1 TTTTGGTAAA-TTCGAGGGTAAAATGGTAA
*
27154449 TTTTTGGTAAAATCGA-GGTCAAAATGG-AA
1 -TTTTGGTAAATTCGAGGGT-AAAATGGTAA
*
27154478 TTTTGG-AAAGTTC-AGGGGTAAAATAGTAA
1 TTTTGGTAAA-TTCGA-GGGTAAAATGGTAA
* *
27154507 TTTTGGTAAAATCGAGGATAAAAATGG-AA
1 TTTTGGTAAATTCGAGGGT-AAAATGGTAA
* * *
27154536 TTTTAG-AAAGTTCGGGGGTAAAATGATAA
1 TTTTGGTAAA-TTCGAGGGTAAAATGGTAA
*
27154565 TTTTGGTAAAATCGAGGGTAAAAATGG-AA
1 TTTTGGTAAATTCGAGGGT-AAAATGGTAA
* * *
27154594 TTTTGGAAAACTTAG-GGGTAAAATAGTAA
1 TTTTGGTAAA-TTCGAGGGTAAAATGGTAA
27154623 TTTT
1 TTTT
27154627 AGAAAATTTT
Statistics
Matches: 142, Mismatches: 20, Indels: 31
0.74 0.10 0.16
Matches are distributed among these distances:
27 4 0.03
28 29 0.20
29 69 0.49
30 37 0.26
31 3 0.02
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (29 bp):
TTTTGGTAAATTCGAGGGTAAAATGGTAA
Found at i:27154461 original size:58 final size:58
Alignment explanation
Indices: 27154376--27154626 Score: 307
Period size: 58 Copynumber: 4.3 Consensus size: 58
27154366 TTGGATACCC
* * * *
27154376 GGGGCAAAATGGTAACTTTGGTCAAAATTG-GGTCAAAAAT-GAGGTTTTGGAAAGTTCA
1 GGGGTAAAATGGTAATTTTGGT-AAAATCGAGGTCAAAAATGGA-ATTTTGGAAAGTTCA
*
27154434 AGGGTAAAATGGTAATTTTTGGTAAAATCGAGGTC-AAAATGGAATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAA-TTTTGGTAAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCA
* * *
27154492 GGGGTAAAATAGTAATTTTGGTAAAATCGAGGAT-AAAAATGGAATTTTAGAAAGTTCG
1 GGGGTAAAATGGTAATTTTGGTAAAATCGAGG-TCAAAAATGGAATTTTGGAAAGTTCA
* *
27154550 GGGGTAAAATGATAATTTTGGTAAAATCGAGGGT-AAAAATGGAATTTTGGAAAACTT-A
1 GGGGTAAAATGGTAATTTTGGTAAAATCGA-GGTCAAAAATGGAATTTTGG-AAAGTTCA
*
27154608 GGGGTAAAATAGTAATTTT
1 GGGGTAAAATGGTAATTTT
27154627 AGAAAATTTT
Statistics
Matches: 170, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
57 17 0.10
58 134 0.79
59 19 0.11
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.30
Consensus pattern (58 bp):
GGGGTAAAATGGTAATTTTGGTAAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCA
Found at i:27154641 original size:58 final size:59
Alignment explanation
Indices: 27154420--27154768 Score: 229
Period size: 58 Copynumber: 5.9 Consensus size: 59
27154410 AAAAATGAGG
* * * ** *
27154420 TTTTGG-AAAGTTCAAGGGTAAAATGGTAATTTTTGGTAAAA-TCGA-GGTCAAAATGGAA
1 TTTTGGAAAAGTTCAGGGGTAAAATAGTAA-TTTTAG-AAAATTTTAGGGTTAAAATGGAA
* ** * *
27154478 TTTTGG-AAAGTTCAGGGGTAAAATAGTAATTTTGGTAAAA-TCGAGGATAAAAATGGAA
1 TTTTGGAAAAGTTCAGGGGTAAAATAGTAATTTTAG-AAAATTTTAGGGTTAAAATGGAA
* * * ** *
27154536 TTTTAG-AAAGTTCGGGGGTAAAAT-GATAATTTTGGTAAAA-TCGAGGGTAAAAATGGAA
1 TTTTGGAAAAGTTCAGGGGTAAAATAG-TAATTTTAG-AAAATTTTAGGGTTAAAATGGAA
* **
27154594 TTTTGGAAAACTT-AGGGGTAAAATAGTAATTTTAGAAAATTTTAGGGTTAAAATATAA
1 TTTTGGAAAAGTTCAGGGGTAAAATAGTAATTTTAGAAAATTTTAGGGTTAAAATGGAA
** * ** *
27154652 TTTTTAAAAAAATTTTGGGGTTAAAATA-TAATTTTTA-AAAAGTTTTAGGGTTAAAATGTAA
1 -TTTTGGAAAAGTTCAGGGG-TAAAATAGTAA-TTTTAGAAAA-TTTTAGGGTTAAAATGGAA
* * * *
27154713 TTTTGGAGAAGTTTGAGGGTTAAAAT-CTAATTTTCA-AAAAGTTTTAGGGTTAAAAT
1 TTTTGGAAAAG-TTCAGGGGTAAAATAGTAATTTT-AGAAAA-TTTTAGGGTTAAAAT
27154769 ATAATTTTTG
Statistics
Matches: 250, Mismatches: 28, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
57 20 0.08
58 127 0.51
59 20 0.08
60 48 0.19
61 35 0.14
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (59 bp):
TTTTGGAAAAGTTCAGGGGTAAAATAGTAATTTTAGAAAATTTTAGGGTTAAAATGGAA
Found at i:27154646 original size:30 final size:29
Alignment explanation
Indices: 27154592--27154776 Score: 187
Period size: 30 Copynumber: 6.2 Consensus size: 29
27154582 GTAAAAATGG
* * *
27154592 AATTTTGGAAAA-CTTAGGGGTAAAATAGT
1 AATTTTAGAAAATTTTAGGGTTAAAATA-T
27154621 AATTTTAGAAAATTTTAGGGTTAAAATAT
1 AATTTTAGAAAATTTTAGGGTTAAAATAT
* *
27154650 AATTTTTAAAAAAATTTTGGGGTTAAAATAT
1 AA-TTTT-AGAAAATTTTAGGGTTAAAATAT
*
27154681 AATTTTTA-AAAAGTTTTAGGGTTAAAATGT
1 AA-TTTTAGAAAA-TTTTAGGGTTAAAATAT
* * * *
27154711 AATTTTGGAGAAGTTTGAGGGTTAAAATCT
1 AATTTTAGA-AAATTTTAGGGTTAAAATAT
27154741 AATTTTCA-AAAAGTTTTAGGGTTAAAATAT
1 AATTTT-AGAAAA-TTTTAGGGTTAAAATAT
27154771 AATTTT
1 AATTTT
27154777 TGGATAATTT
Statistics
Matches: 133, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
29 24 0.18
30 79 0.59
31 30 0.23
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.40
Consensus pattern (29 bp):
AATTTTAGAAAATTTTAGGGTTAAAATAT
Found at i:27154744 original size:60 final size:59
Alignment explanation
Indices: 27154592--27154786 Score: 218
Period size: 60 Copynumber: 3.3 Consensus size: 59
27154582 GTAAAAATGG
* *
27154592 AATTTTGGAAAACTT-AGGGGTAAAATAGTAA-TTTTAGAAAA-TTTTAGGGTTAAAATAT
1 AATTTTGGAAAATTTGAGGGTTAAAATA-TAATTTTTA-AAAAGTTTTAGGGTTAAAATAT
** *
27154650 AATTTTTAAAAAAATTTTG-GGGTTAAAATATAATTTTTAAAAAGTTTTAGGGTTAAAATGT
1 AA-TTTT-GGAAAA-TTTGAGGGTTAAAATATAATTTTTAAAAAGTTTTAGGGTTAAAATAT
* * *
27154711 AATTTTGGAGAAGTTTGAGGGTTAAAATCTAATTTTCAAAAAGTTTTAGGGTTAAAATAT
1 AATTTTGGA-AAATTTGAGGGTTAAAATATAATTTTTAAAAAGTTTTAGGGTTAAAATAT
*
27154771 AATTTTTGGATAATTT
1 AA-TTTTGGAAAATTT
27154787 ATGGACTTTC
Statistics
Matches: 115, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
58 2 0.02
59 9 0.08
60 62 0.54
61 42 0.37
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (59 bp):
AATTTTGGAAAATTTGAGGGTTAAAATATAATTTTTAAAAAGTTTTAGGGTTAAAATAT
Found at i:27157120 original size:92 final size:92
Alignment explanation
Indices: 27156963--27157648 Score: 1156
Period size: 92 Copynumber: 7.5 Consensus size: 92
27156953 TGATGTCGAG
* * * * **
27156963 GCTTTATCTTACTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTGCAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
*
27157028 TCAAGAGGATAAGAATTGACATTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
* * *
27157055 GCTTCATCTTGCTCTTACTACAACTTCAGTGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
27157120 TCAAGAGGATAAGAATTGACGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
27157147 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
27157212 TCAAGAGGATAAGAATTGACGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
* * *
27157239 TCTTTATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
* * *
27157304 TCAAGAGGATAAAAATAGATGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
27157331 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
*
27157396 TCAAGAGGATAAGAATTGATGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
*
27157423 GCTTCATCTTGCTCTTACTATAATTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
*
27157488 TCAAGAGGATAAGAATTGATGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
* * *
27157515 GCTTCACCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCTAAATTTACTATAACT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
*
27157580 TCAAGAGGATAAGAATTCACGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
*
27157607 GCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGGTT
1 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTT
27157649 TGCTATTTTT
Statistics
Matches: 565, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 565 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (92 bp):
GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACT
TCAAGAGGATAAGAATTGACGTTTGAA
Found at i:27157827 original size:48 final size:48
Alignment explanation
Indices: 27157768--27157859 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
27157758 TCCCTTCAAA
*
27157768 TCTTTATGGTACTGGATCCACCATTGCGGTCTTAGATCTTTCCCTTTG
1 TCTTTACGGTACTGGATCCACCATTGCGGTCTTAGATCTTTCCCTTTG
*** * *
27157816 TCTTTACGGTACTGGATTTGCCGTTGCTGTCTTAGATCTTTCCC
1 TCTTTACGGTACTGGATCCACCATTGCGGTCTTAGATCTTTCCC
27157860 GTCATGTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.42
Consensus pattern (48 bp):
TCTTTACGGTACTGGATCCACCATTGCGGTCTTAGATCTTTCCCTTTG
Found at i:27164952 original size:90 final size:90
Alignment explanation
Indices: 27164797--27164976 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
27164787 GGTTGTACCA
*
27164797 TTTTGCAGCGGATCCAACCAAACTATCTTGGAAACAGTGAATTAATAATTTATCATTGTGGACAT
1 TTTTGCAGCGGATCCAACCAAACTATCTTGGAAACAGTGAATTAATAATTTATCATTGTGAACAT
27164862 ATCCTGTCATTTTCGACAGAACATC
66 ATCCTGTCATTTTCGACAGAACATC
27164887 TTTTGCAGCGGATCCAACCAAACTATCTTGGAAACAGTGAATTAATAATTTATCATTGTGAACAT
1 TTTTGCAGCGGATCCAACCAAACTATCTTGGAAACAGTGAATTAATAATTTATCATTGTGAACAT
27164952 ATCCTGTCATTTTCGACAGAACATC
66 ATCCTGTCATTTTCGACAGAACATC
27164977 GTAATGTGTG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (90 bp):
TTTTGCAGCGGATCCAACCAAACTATCTTGGAAACAGTGAATTAATAATTTATCATTGTGAACAT
ATCCTGTCATTTTCGACAGAACATC
Found at i:27169459 original size:29 final size:29
Alignment explanation
Indices: 27169427--27169575 Score: 73
Period size: 28 Copynumber: 5.1 Consensus size: 29
27169417 AAAAATGGGG
27169427 TTTTAAAAAGTTCGAGGGTAAAATGGTAA
1 TTTTAAAAAGTTCGAGGGTAAAATGGTAA
27169456 TTTTTGGTAAAAA--TCGA-GGTCAAAATGG-AA
1 --TTT--TAAAAAGTTCGAGGGT-AAAATGGTAA
** ** *
27169486 TTTTGGAAAGTTTAAGGGTAAAGTGGTAA
1 TTTTAAAAAGTTCGAGGGTAAAATGGTAA
*
27169515 TTTGGT-AAAA--T-AAGGGTTAAAAATGG-AA
1 TTT--TAAAAAGTTCGAGGG-T-AAAATGGTAA
* * *
27169543 TTTTAGAAAGTTTGGGGGTAAAATGGTAA
1 TTTTAAAAAGTTCGAGGGTAAAATGGTAA
27169572 TTTT
1 TTTT
27169576 GGTGAAATCA
Statistics
Matches: 92, Mismatches: 10, Indels: 34
0.68 0.07 0.25
Matches are distributed among these distances:
26 5 0.05
27 8 0.09
28 25 0.27
29 22 0.24
30 11 0.12
31 15 0.16
33 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (29 bp):
TTTTAAAAAGTTCGAGGGTAAAATGGTAA
Found at i:27169546 original size:57 final size:57
Alignment explanation
Indices: 27169418--27169632 Score: 209
Period size: 57 Copynumber: 3.7 Consensus size: 57
27169408 AATTAGGTAA
** * ** * *
27169418 AAAATGGGGTTTTAAAAAGTTCGAGGGTAAAATGGTAATTTTTGGTAAAA-ATCGAGGT
1 AAAATGGAATTTTAGAAAGTTTAAGGGTAAAATGGTAA-TTTTGGTAAAATA-AGGGGT
* * *
27169476 CAAAATGGAATTTTGGAAAGTTTAAGGGTAAAGTGGTAA-TTTGGTAAAATAAGGGTT
1 -AAAATGGAATTTTAGAAAGTTTAAGGGTAAAATGGTAATTTTGGTAAAATAAGGGGT
** * *
27169533 AAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTGGTGAAATCAGGGGT
1 -AAAATGGAATTTTAGAAAGTTTAAGGGTAAAATGGTAATTTTGGTAAAATAAGGGGT
** * **
27169591 AAAATGGAATTTTAGAAAACTTGAGGGTAAAAAAGTAATTTT
1 AAAATGGAATTTTAGAAAGTTTAAGGGTAAAATGGTAATTTT
27169633 TAGAAAATTT
Statistics
Matches: 131, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
57 84 0.64
58 16 0.12
59 31 0.24
ACGTcount: A:0.40, C:0.02, G:0.27, T:0.31
Consensus pattern (57 bp):
AAAATGGAATTTTAGAAAGTTTAAGGGTAAAATGGTAATTTTGGTAAAATAAGGGGT
Found at i:27169617 original size:29 final size:28
Alignment explanation
Indices: 27169477--27169641 Score: 88
Period size: 29 Copynumber: 5.8 Consensus size: 28
27169467 AATCGAGGTC
* * * *
27169477 AAAATGGAATTTTGGAAAGTTTAAGGGT
1 AAAATGGAATTTTAGAAAATTGAGGGGT
* * * *
27169505 AAAGTGGTAA-TTTGGTAAAA-TAAGGGTT
1 AAAATGG-AATTTTAG-AAAATTGAGGGGT
*
27169533 AAAAATGGAATTTTAGAAAGTTTG-GGGGT
1 -AAAATGGAATTTTAGAAA-ATTGAGGGGT
* * *
27169562 AAAATGGTAATTTTGGTGAAA-TCAGGGGT
1 AAAATGG-AATTTTAG-AAAATTGAGGGGT
27169591 AAAATGGAATTTTAGAAAACTTGA-GGGT
1 AAAATGGAATTTTAGAAAA-TTGAGGGGT
* *
27169619 AAAAAAGTAATTTTTAGAAAATT
1 -AAAATGGAA-TTTTAGAAAATT
27169642 TTGGGGTCAA
Statistics
Matches: 105, Mismatches: 19, Indels: 25
0.70 0.13 0.17
Matches are distributed among these distances:
27 3 0.03
28 40 0.38
29 49 0.47
30 13 0.12
ACGTcount: A:0.41, C:0.01, G:0.26, T:0.32
Consensus pattern (28 bp):
AAAATGGAATTTTAGAAAATTGAGGGGT
Found at i:27169660 original size:30 final size:30
Alignment explanation
Indices: 27169600--27169783 Score: 169
Period size: 30 Copynumber: 6.1 Consensus size: 30
27169590 TAAAATGGAA
* * *
27169600 TTTTAGAAAA-CTTGAGGGTAAAAAAGTAAT
1 TTTTAGAAAATTTTGAGGTTAAAATA-TAAT
* *
27169630 TTTTAGAAAATTTTGGGGTCAAAATATAAT
1 TTTTAGAAAATTTTGAGGTTAAAATATAAT
* *
27169660 TTTCA-AAAAGTTTTAAGGTTAAAATATAA-
1 TTTTAGAAAA-TTTTGAGGTTAAAATATAAT
* * * *
27169689 TTTTGGAGAAGTTTGAGGGTTAAAATGTAA-
1 TTTTAGAAAATTTTGA-GGTTAAAATATAAT
* *
27169719 TTTTAGAGAAGTTTAGAGGTTAAAATATAAT
1 TTTTAGA-AAATTTTGAGGTTAAAATATAAT
* *
27169750 TTTTAGAAAGTTTTAAGGTTAAAATATAAT
1 TTTTAGAAAATTTTGAGGTTAAAATATAAT
27169780 TTTT
1 TTTT
27169784 GTATAGTTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
29 11 0.09
30 92 0.74
31 22 0.18
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (30 bp):
TTTTAGAAAATTTTGAGGTTAAAATATAAT
Found at i:27169792 original size:60 final size:58
Alignment explanation
Indices: 27169598--27169796 Score: 193
Period size: 60 Copynumber: 3.3 Consensus size: 58
27169588 GGTAAAATGG
** * * * * * *
27169598 AATTTTAGAAAACTTGAGGGTAAAAAAGTAATTTTTAGAAAATTTTGGGGTCAAAATAT
1 AATTTTAGAAAGTTTAAGGTTAAAATA-TAATTTTTAGAAAGTTTTAGGGTTAAAATAT
* * * *
27169657 AATTTTCAAAAAGTTTTAAGGTTAAAATATAA-TTTTGGAGAAGTTTGAGGGTTAAAATGT
1 AATTTT-AGAAAG-TTTAAGGTTAAAATATAATTTTTAGA-AAGTTTTAGGGTTAAAATAT
*
27169717 AATTTTAGAGAAGTTTAGAGGTTAAAATATAATTTTTAGAAAGTTTTAAGGTTAAAATAT
1 AATTTTAGA-AAGTTTA-AGGTTAAAATATAATTTTTAGAAAGTTTTAGGGTTAAAATAT
* *
27169777 AATTTTTGTATAGTTTAAGG
1 AATTTTAG-AAAGTTTAAGG
27169797 ACTTTCAGGG
Statistics
Matches: 114, Mismatches: 19, Indels: 14
0.78 0.13 0.10
Matches are distributed among these distances:
59 21 0.18
60 75 0.66
61 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.39
Consensus pattern (58 bp):
AATTTTAGAAAGTTTAAGGTTAAAATATAATTTTTAGAAAGTTTTAGGGTTAAAATAT
Found at i:27169792 original size:90 final size:90
Alignment explanation
Indices: 27169611--27169782 Score: 256
Period size: 90 Copynumber: 1.9 Consensus size: 90
27169601 TTTAGAAAAC
* *
27169611 TTGAGGGTAAAAAAGTAATTTTTAGAAAATTTTGGGGTCAAAATATAATTTTCAAAAAGTTTTAA
1 TTGAGGGTAAAAAAGTAATTTTTAGAAAATTTAGAGGTCAAAATATAATTTTCAAAAAGTTTTAA
27169676 GGTTAAAATATAATTTTGGAGAAGT
66 GGTTAAAATATAATTTTGGAGAAGT
* * * * * *
27169701 TTGAGGGTTAAAATGTAA-TTTTAGAGAAGTTTAGAGGTTAAAATATAATTTTTAGAAAGTTTTA
1 TTGAGGGTAAAAAAGTAATTTTTAGA-AAATTTAGAGGTCAAAATATAATTTTCAAAAAGTTTTA
27169765 AGGTTAAAATATAATTTT
65 AGGTTAAAATATAATTTT
27169783 TGTATAGTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
89 7 0.10
90 66 0.90
ACGTcount: A:0.41, C:0.01, G:0.19, T:0.39
Consensus pattern (90 bp):
TTGAGGGTAAAAAAGTAATTTTTAGAAAATTTAGAGGTCAAAATATAATTTTCAAAAAGTTTTAA
GGTTAAAATATAATTTTGGAGAAGT
Found at i:27171021 original size:22 final size:22
Alignment explanation
Indices: 27170996--27171045 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
27170986 TGCTAATATG
* *
27170996 ATTTATTCTTAATATTATTATT
1 ATTTATTATAAATATTATTATT
*
27171018 ATTTATTATAAATATTATTGTT
1 ATTTATTATAAATATTATTATT
27171040 ATTTAT
1 ATTTAT
27171046 AAAACATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTATTATAAATATTATTATT
Found at i:27171054 original size:22 final size:22
Alignment explanation
Indices: 27171006--27171055 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
27170996 ATTTATTCTT
*
27171006 AATATTATTATTATTTATTATA
1 AATATTATTATTATTTATTAAA
*
27171028 AATATTATTGTTATTTA-TAAA
1 AATATTATTATTATTTATTAAA
27171049 ACATATT
1 A-ATATT
27171056 TACAGTTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
AATATTATTATTATTTATTAAA
Found at i:27171683 original size:17 final size:16
Alignment explanation
Indices: 27171661--27171748 Score: 97
Period size: 17 Copynumber: 5.3 Consensus size: 16
27171651 GGACATTTTA
*
27171661 TTAAATTTATAATAATT
1 TTAAATTTA-AATAAAT
27171678 TTAAATTTAAATTAAAT
1 TTAAATTTAAA-TAAAT
** *
27171695 CCAAATTTAAATTGAAT
1 TTAAATTTAAA-TAAAT
27171712 TTAAATTT-AATAAAT
1 TTAAATTTAAATAAAT
27171727 TTAAATTTAAAATAAAT
1 TTAAATTT-AAATAAAT
27171744 TTAAA
1 TTAAA
27171749 ATGGTTTGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
15 12 0.20
16 4 0.07
17 45 0.74
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (16 bp):
TTAAATTTAAATAAAT
Found at i:27171688 original size:6 final size:6
Alignment explanation
Indices: 27171677--27171748 Score: 66
Period size: 6 Copynumber: 13.0 Consensus size: 6
27171667 TTATAATAAT
** *
27171677 TTTAAA TTTAAA -TTAAA TCCAAA TTTAAA -TTGAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
27171722 --TAAA TTTAAA TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
27171749 ATGGTTTGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
3 1 0.02
4 2 0.04
5 15 0.29
6 34 0.65
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:27171692 original size:11 final size:11
Alignment explanation
Indices: 27171677--27171748 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
27171667 TTATAATAAT
27171677 TTTAAATTTAAA
1 TTTAAA-TTAAA
*
27171689 -TTAAATCCAAA
1 TTTAAAT-TAAA
*
27171700 TTTAAATTGAA
1 TTTAAATTAAA
*
27171711 TTTAAATTTAA
1 TTTAAATTAAA
27171722 --TAAATTTAAA
1 TTTAAA-TTAAA
*
27171732 TTTAAAATAAA
1 TTTAAATTAAA
27171743 TTTAAA
1 TTTAAA
27171749 ATGGTTTGGT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
9 4 0.08
10 5 0.10
11 30 0.61
12 10 0.20
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:27172599 original size:78 final size:78
Alignment explanation
Indices: 27172420--27172651 Score: 360
Period size: 78 Copynumber: 3.0 Consensus size: 78
27172410 AATTAAAGTG
* * * * *
27172420 TAAAT-ATCAATCGATTGAGTCTTAACTTGATTGACATGAGTATTGTTGTTAATGTAAGAGGATA
1 TAAATGATCAACCGATTGAGTCTTAGCTCGATTGACATGAGTATTGTTGTCAATGCAAGAGGATA
27172484 T-GGTGCGCTGAA
66 TGGGTGCGCTGAA
* * *
27172496 TAAATGATCAACCAATTCAGTCTTAGCTCGATTGGCATGAGTATTGTTGTCAATGCAAGAGGATA
1 TAAATGATCAACCGATTGAGTCTTAGCTCGATTGACATGAGTATTGTTGTCAATGCAAGAGGATA
27172561 TGGGTGCGCTGAA
66 TGGGTGCGCTGAA
* *
27172574 TAAATGATCAACCGATTGAGTCTTAGCTCGATTGACATGAGCATTGTTGTCAATGCAAGAGGACA
1 TAAATGATCAACCGATTGAGTCTTAGCTCGATTGACATGAGTATTGTTGTCAATGCAAGAGGATA
27172639 TGGGTGCGCTGAA
66 TGGGTGCGCTGAA
27172652 GCACATTATC
Statistics
Matches: 141, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
76 5 0.04
77 52 0.37
78 84 0.60
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (78 bp):
TAAATGATCAACCGATTGAGTCTTAGCTCGATTGACATGAGTATTGTTGTCAATGCAAGAGGATA
TGGGTGCGCTGAA
Found at i:27174516 original size:24 final size:24
Alignment explanation
Indices: 27174471--27174517 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
27174461 ATGGATGTTC
*
27174471 AACCTTTCATCTCCCTTGACCTTA
1 AACCTTTCATCTCCCTTAACCTTA
* *
27174495 AACCTTTCATCTTCTTTAACCTT
1 AACCTTTCATCTCCCTTAACCTT
27174518 TCATATTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.34, G:0.02, T:0.43
Consensus pattern (24 bp):
AACCTTTCATCTCCCTTAACCTTA
Found at i:27174517 original size:17 final size:18
Alignment explanation
Indices: 27174495--27174532 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
27174485 CTTGACCTTA
*
27174495 AACCTTTCATCTTCTT-T
1 AACCTTTCATATTCTTGT
27174512 AACCTTTCATATTCTTGT
1 AACCTTTCATATTCTTGT
27174530 AAC
1 AAC
27174533 TACTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.24, C:0.26, G:0.03, T:0.47
Consensus pattern (18 bp):
AACCTTTCATATTCTTGT
Found at i:27179678 original size:2 final size:2
Alignment explanation
Indices: 27179671--27179699 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
27179661 GGAGTAAATT
27179671 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
27179700 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:27179923 original size:24 final size:24
Alignment explanation
Indices: 27179878--27179924 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
27179868 ATGGATGTTC
* *
27179878 AACCTTTCATCTCTCTTGACCTTA
1 AACCTTCCATCTCTCTTAACCTTA
27179902 AACCTTCCATCT-TCTTTAACCTT
1 AACCTTCCATCTCTC-TTAACCTT
27179925 TCATATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.21, C:0.34, G:0.02, T:0.43
Consensus pattern (24 bp):
AACCTTCCATCTCTCTTAACCTTA
Found at i:27179924 original size:17 final size:18
Alignment explanation
Indices: 27179902--27179939 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
27179892 CTTGACCTTA
*
27179902 AACCTTCCATCTTCTT-T
1 AACCTTCCATATTCTTGT
*
27179919 AACCTTTCATATTCTTGT
1 AACCTTCCATATTCTTGT
27179937 AAC
1 AAC
27179940 TACTTTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.45
Consensus pattern (18 bp):
AACCTTCCATATTCTTGT
Found at i:27180819 original size:30 final size:30
Alignment explanation
Indices: 27180785--27180860 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
27180775 TTTCGGGTAA
*
27180785 AACCAAATTAATTCGGCTAATCGGTTGGTT
1 AACCAAATTAATTCGGCTAATCGGTTGATT
* ** *
27180815 AACC-AATCAAATTTAGTTAATCGGTTGATT
1 AACCAAAT-TAATTCGGCTAATCGGTTGATT
27180845 AACCAAATTAATTCGG
1 AACCAAATTAATTCGG
27180861 TCGGGGATCG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
29 3 0.08
30 30 0.83
31 3 0.08
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (30 bp):
AACCAAATTAATTCGGCTAATCGGTTGATT
Found at i:27182451 original size:19 final size:20
Alignment explanation
Indices: 27182414--27182451 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
27182404 AATTGGACAT
*
27182414 TAAAATATCAAACTTAAATA
1 TAAAATATCAAACTAAAATA
*
27182434 TAAAAT-TCGAACTAAAAT
1 TAAAATATCAAACTAAAAT
27182452 TTTTTAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.29
Consensus pattern (20 bp):
TAAAATATCAAACTAAAATA
Found at i:27188378 original size:3 final size:3
Alignment explanation
Indices: 27188370--27188399 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
27188360 TCCTCTTGCA
27188370 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
27188400 AGTTGTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:27189528 original size:9 final size:9
Alignment explanation
Indices: 27189514--27189538 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27189504 AGGAAAAGAA
27189514 AAAGAAAAC
1 AAAGAAAAC
27189523 AAAGAAAAC
1 AAAGAAAAC
27189532 AAAGAAA
1 AAAGAAA
27189539 TAATGTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.08, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAGAAAAC
Found at i:27190447 original size:29 final size:27
Alignment explanation
Indices: 27190408--27190490 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 27
27190398 TTTTTTTTGA
27190408 ACCCTTTAAAAATTGGTAAAAAAAATTTAG
1 ACCC-TTAAAAATT-G-AAAAAAAATTTAG
* *
27190438 ATCCTTAAAAGTTGAAAAAAAAGTTTTAG
1 ACCCTTAAAAATTGAAAAAAAA--TTTAG
27190467 ACCCTTAAAAATTGAAAAAAAATT
1 ACCCTTAAAAATTGAAAAAAAATT
27190491 GAATCTCTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 10 0.21
28 1 0.02
29 33 0.70
30 3 0.06
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (27 bp):
ACCCTTAAAAATTGAAAAAAAATTTAG
Found at i:27190984 original size:28 final size:29
Alignment explanation
Indices: 27190935--27191058 Score: 103
Period size: 28 Copynumber: 4.2 Consensus size: 29
27190925 AATGAGATCT
*
27190935 CTTAAAAGTTGATAAAATAAATTTTA-GACC
1 CTTAAAAGTT-A-AAAAAAAATTTTAGGACC
*
27190965 CTTAAAAGCTAAAAAAAAA-TTTAGGACC
1 CTTAAAAGTTAAAAAAAAATTTTAGGACC
* **
27190993 CTTTAAAAATTGGTAAAAAAATTTT--GACC
1 C-TTAAAAGTT-AAAAAAAAATTTTAGGACC
* * *
27191022 TTTAAAAGTTAAAAGAAAAAATTTAGGTCC
1 CTTAAAAGTTAAAA-AAAAATTTTAGGACC
27191052 CTTAAAA
1 CTTAAAA
27191059 ATAAAATAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
27 6 0.08
28 28 0.38
29 12 0.16
30 25 0.34
31 3 0.04
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.30
Consensus pattern (29 bp):
CTTAAAAGTTAAAAAAAAATTTTAGGACC
Found at i:27191010 original size:59 final size:58
Alignment explanation
Indices: 27190935--27191060 Score: 166
Period size: 59 Copynumber: 2.2 Consensus size: 58
27190925 AATGAGATCT
*
27190935 CTTAAAAGTTGATAAAATAAATTTTAGACCCTTAAAAGCT-AAA-AAAAAATTTAGGACC
1 CTTAAAAATTGATAAAA-AAATTTT-GACCCTTAAAAGCTAAAAGAAAAAATTTAGGACC
* * * *
27190993 CTTTAAAAATTGGTAAAAAAATTTTGACCTTTAAAAGTTAAAAGAAAAAATTTAGGTCC
1 C-TTAAAAATTGATAAAAAAATTTTGACCCTTAAAAGCTAAAAGAAAAAATTTAGGACC
27191052 CTTAAAAAT
1 CTTAAAAAT
27191061 AAAATAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
57 12 0.20
58 19 0.32
59 29 0.48
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.30
Consensus pattern (58 bp):
CTTAAAAATTGATAAAAAAATTTTGACCCTTAAAAGCTAAAAGAAAAAATTTAGGACC
Found at i:27196695 original size:28 final size:28
Alignment explanation
Indices: 27196663--27196717 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
27196653 TTTTCGTTTA
* *
27196663 ATTTAGAGTTAAA-TTGATTTTTAATTTT
1 ATTTAAAGTTAAACTT-ATTTTAAATTTT
*
27196691 ATTTAAATTTAAACTTATTTTAAATTT
1 ATTTAAAGTTAAACTTATTTTAAATTT
27196718 AAATTTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.56
Consensus pattern (28 bp):
ATTTAAAGTTAAACTTATTTTAAATTTT
Found at i:27196700 original size:6 final size:6
Alignment explanation
Indices: 27196691--27196781 Score: 69
Period size: 6 Copynumber: 15.0 Consensus size: 6
27196681 TTTTAATTTT
* *
27196691 ATTTAA ATTTAA ACTT-A TTTTAA ATTTAA ATTTAA TTATTTAA ATTT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA --ATTTAA ATTTAA
* * ** * *
27196739 CTTTGA ATTTAA ATTTAA ATAAAA ATTAAA ACATTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A-TTTAA ATTTAA
27196782 CATTAAAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
5 7 0.10
6 50 0.75
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47
Consensus pattern (6 bp):
ATTTAA
Found at i:27196748 original size:31 final size:31
Alignment explanation
Indices: 27196697--27196756 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
27196687 TTTTATTTAA
*
27196697 ATTTAAACTTATTTTAAATTTAAATTTAATT
1 ATTTAAACTTACTTTAAATTTAAATTTAATT
* *
27196728 ATTTAAATTTACTTTGAATTTAAATTTAA
1 ATTTAAACTTACTTTAAATTTAAATTTAA
27196757 ATAAAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (31 bp):
ATTTAAACTTACTTTAAATTTAAATTTAATT
Found at i:27196750 original size:17 final size:16
Alignment explanation
Indices: 27196682--27196755 Score: 80
Period size: 17 Copynumber: 4.6 Consensus size: 16
27196672 TAAATTGATT
*
27196682 TTTAATTTTATTTAAA
1 TTTAAATTTATTTAAA
*
27196698 TTTAAACTTATTTTAAA
1 TTTAAATTTA-TTTAAA
*
27196715 TTTAAATTTAATT--A
1 TTTAAATTTATTTAAA
*
27196729 TTTAAATTTACTTTGAA
1 TTTAAATTTA-TTTAAA
27196746 TTTAAATTTA
1 TTTAAATTTA
27196756 AATAAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
14 11 0.22
15 2 0.04
16 10 0.20
17 26 0.53
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:27198274 original size:30 final size:33
Alignment explanation
Indices: 27198238--27198301 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
27198228 CTTAATGGTC
*
27198238 TATTTGCGT-AA-TTGGTCC-TTCCGCATTTTT
1 TATTTGCGTCAATTTAGTCCTTTCCGCATTTTT
* *
27198268 TATTTGCTTCAATTTAGTCCTTTCTGCATTTTT
1 TATTTGCGTCAATTTAGTCCTTTCCGCATTTTT
27198301 T
1 T
27198302 TAATTATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 8 0.29
31 2 0.07
32 6 0.21
33 12 0.43
ACGTcount: A:0.14, C:0.19, G:0.12, T:0.55
Consensus pattern (33 bp):
TATTTGCGTCAATTTAGTCCTTTCCGCATTTTT
Found at i:27198533 original size:160 final size:162
Alignment explanation
Indices: 27198346--27198682 Score: 507
Period size: 162 Copynumber: 2.1 Consensus size: 162
27198336 GCTTTTCAAT
**
27198346 TTAGTCCTTTGACTGTTTGGTTGTACCAGAGGCTGCCACGTGTCA-TTTTTGGATTATTT-TGCA
1 TTAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATTATTTGTGCA
* *
27198409 TTTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAATTTTTATTCAACTATGA
66 TTTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTCAACTACGA
* * *
27198474 AATTGGCCCAAGAATTTTTCATGGTTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTACAAA
* *
27198506 TTAGTCCTTTGACTGTTTGACTGTACCAGGGGCTGCCACGTGTCACTTTTTGGCTTATTTGTGCA
1 TTAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATTATTTGTGCA
* *** * *
27198571 TTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTTAATTACGA
66 TTTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTCAACTACGA
*
27198636 AATTGGCCCAAGAATTTTTCAAGATTTACAAC
131 AATTGGCCCAAGAATTTTTCAAGATTTACAAA
*
27198668 TTAATCCTTTGACTG
1 TTAGTCCTTTGACTG
27198683 CTGGATGCCT
Statistics
Matches: 158, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
160 42 0.27
161 13 0.08
162 103 0.65
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (162 bp):
TTAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATTATTTGTGCA
TTTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTCAACTACGA
AATTGGCCCAAGAATTTTTCAAGATTTACAAA
Found at i:27198877 original size:59 final size:59
Alignment explanation
Indices: 27198814--27199070 Score: 367
Period size: 59 Copynumber: 4.4 Consensus size: 59
27198804 CGAAACTTCT
* * *
27198814 GAAAATTACCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCTCGATTTCATC
1 GAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
* * *
27198873 GAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCTCGATTTTACC
1 GAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
* *
27198932 GAAAATTACCATTTTA-CCCCTAA-CTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 GAAAATTACCATTTTACCCCCGAATC-TTCTAAAATTCCATTTTTAACCCCGATTTCACC
* * *
27198990 GAAAATTACCATTTTACCCCCGTATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
1 GAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
* *
27199049 -AAAATCACCATTTTGCCCCCGA
1 GAAAATTACCATTTTACCCCCGA
27199071 GTATCCACAA
Statistics
Matches: 178, Mismatches: 17, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
57 1 0.01
58 70 0.39
59 106 0.60
60 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.36
Consensus pattern (59 bp):
GAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:27198987 original size:117 final size:118
Alignment explanation
Indices: 27198814--27199067 Score: 397
Period size: 117 Copynumber: 2.2 Consensus size: 118
27198804 CGAAACTTCT
* * *
27198814 GAAAATTACCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCTCGATTTCATCGAAAAT
1 GAAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCCGATTTCACCGAAAAT
* * *
27198879 TACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCTCGATTTTACC
66 TACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
27198932 GAAAATTACCATTTTACCCCT-AA-CTTTCCAAAATTCCATTTTTAACCCCGATTTCACCGAAAA
1 GAAAATTACCATTTTACCCCTGAATC-TTCCAAAATTCCATTTTTAACCCCGATTTCACCGAAAA
*
27198995 TTACCATTTTACCCCCGTATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
65 TTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
* *
27199049 -AAAATCACCATTTTGCCCC
1 GAAAATTACCATTTTACCCC
27199068 CGAGTATCCA
Statistics
Matches: 126, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
116 18 0.14
117 87 0.69
118 21 0.17
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.36
Consensus pattern (118 bp):
GAAAATTACCATTTTACCCCTGAATCTTCCAAAATTCCATTTTTAACCCCGATTTCACCGAAAAT
TACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
Found at i:27199063 original size:30 final size:27
Alignment explanation
Indices: 27198844--27199062 Score: 95
Period size: 30 Copynumber: 7.5 Consensus size: 27
27198834 TGAATCTTCT
* * *
27198844 AAAATTCCATTTTTAACCTCGATTTCATCG
1 AAAATACCA-TTTTAACCCCGATTT-A-CC
* **
27198874 AAAATTACCATTTTACCCCCGAATCTT-TT
1 AAAA-TACCATTTTAACCCCG-AT-TTACC
* *
27198903 AAAATTCCATTTTTAACCTCGATTTTACC
1 AAAATACCA-TTTTAACCCCGA-TTTACC
*
27198932 GAAAATTACCATTTT-ACCCCTAACTTT-CC
1 -AAAA-TACCATTTTAACCCC-GA-TTTACC
*
27198961 AAAATTCCATTTTTAACCCCGATTTCACC
1 AAAATACCA-TTTTAACCCCGATTT-ACC
* **
27198990 GAAAATTACCATTTTACCCCCGTATCTT-TT
1 -AAAA-TACCATTTTAACCCCG-AT-TTACC
*
27199020 AAAATTCCATTTTGAACCCCGATTTCACC
1 AAAATACCATTTT-AACCCCGATTT-ACC
27199049 AAAATCACCATTTT
1 AAAAT-ACCATTTT
27199063 GCCCCCGAGT
Statistics
Matches: 143, Mismatches: 25, Indels: 42
0.68 0.12 0.20
Matches are distributed among these distances:
27 9 0.06
28 26 0.18
29 42 0.29
30 46 0.32
31 16 0.11
32 4 0.03
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (27 bp):
AAAATACCATTTTAACCCCGATTTACC
Found at i:27199068 original size:29 final size:28
Alignment explanation
Indices: 27198959--27199070 Score: 75
Period size: 29 Copynumber: 3.8 Consensus size: 28
27198949 CCCTAACTTT
* **
27198959 CCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAATACCA-TTTTGCCCCCGATTTCA
*
27198988 CCGAAAATTACCATTTTACCCCCGTATCTT--
1 CC-AAAA-TACCATTTTGCCCCCG-AT-TTCA
** * *
27199018 TTAAAATTCCATTTTGAACCCCGATTTCA
1 CCAAAATACCATTTTG-CCCCCGATTTCA
27199047 CCAAAATCACCATTTTGCCCCCGA
1 CCAAAAT-ACCATTTTGCCCCCGA
27199071 GTATCCACAA
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
27 2 0.03
28 10 0.16
29 22 0.34
30 22 0.34
31 6 0.09
32 2 0.03
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.32
Consensus pattern (28 bp):
CCAAAATACCATTTTGCCCCCGATTTCA
Found at i:27199091 original size:117 final size:117
Alignment explanation
Indices: 27198814--27199104 Score: 352
Period size: 117 Copynumber: 2.5 Consensus size: 117
27198804 CGAAACTTCT
* * * * * *
27198814 GAAAATTACCATTTTACCCCTGAATCT-TCTAAAATTCCATTTTTAACCTCGATTTCATCGAAAA
1 GAAAATCACCATTTTACCCC-CAA-CTATCCAAAATCCCATTTTTAACCCCGATTTCACCGAAAA
* * *
27198878 TTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCTCGATTTTACC
64 TTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
* * * *
27198932 GAAAATTACCATTTTACCCCTAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCGAAAATT
1 GAAAATCACCATTTTACCCCCAACTATCCAAAATCCCATTTTTAACCCCGATTTCACCGAAAATT
*
27198997 ACCATTTTACCCCCGTATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
66 ACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
* * * * * * *
27199049 -AAAATCACCATTTTGCCCCCGAGTATCCACAAGTCCCGTTTTTCACCCCAATTTCA
1 GAAAATCACCATTTTACCCCCAACTATCCA-AAATCCCATTTTTAACCCCGATTTCA
27199105 TCGTTTATCA
Statistics
Matches: 152, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
116 25 0.16
117 107 0.70
118 20 0.13
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (117 bp):
GAAAATCACCATTTTACCCCCAACTATCCAAAATCCCATTTTTAACCCCGATTTCACCGAAAATT
ACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTGAACCCCGATTTCACC
Found at i:27200805 original size:8 final size:8
Alignment explanation
Indices: 27200792--27200817 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
27200782 GCAGATATCT
27200792 TTCATTTA
1 TTCATTTA
27200800 TTCATTTA
1 TTCATTTA
27200808 TTCATTTA
1 TTCATTTA
27200816 TT
1 TT
27200818 TATTCATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (8 bp):
TTCATTTA
Found at i:27210936 original size:18 final size:19
Alignment explanation
Indices: 27210901--27210939 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
27210891 TAAAATAAAG
*
27210901 AACATTGTTTTATTTTTAA
1 AACATTGTTTTATGTTTAA
*
27210920 AACATT-TTTTGTGTTTAA
1 AACATTGTTTTATGTTTAA
27210938 AA
1 AA
27210940 GAATGGTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (19 bp):
AACATTGTTTTATGTTTAA
Found at i:27211590 original size:30 final size:30
Alignment explanation
Indices: 27211555--27211657 Score: 95
Period size: 30 Copynumber: 3.4 Consensus size: 30
27211545 GTAAAATCAA
*
27211555 AATTTTGGAAAGTTTTAGGGGTTAAAATGT
1 AATTTTAGAAAGTTTTAGGGGTTAAAATGT
* *
27211585 AATTTTCCAAAAAG-TTTA-GGGATAAAATGT
1 AATTTT--AGAAAGTTTTAGGGGTTAAAATGT
* * *
27211615 AATTTTTAGAAA-TTTTGGGGGTCAAAATGA
1 AA-TTTTAGAAAGTTTTAGGGGTTAAAATGT
27211645 AATTTTTAGAAAG
1 AA-TTTTAGAAAG
27211658 ATCAAGGTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
29 7 0.12
30 40 0.68
31 8 0.14
32 4 0.07
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.37
Consensus pattern (30 bp):
AATTTTAGAAAGTTTTAGGGGTTAAAATGT
Found at i:27213623 original size:116 final size:115
Alignment explanation
Indices: 27213416--27213662 Score: 370
Period size: 116 Copynumber: 2.1 Consensus size: 115
27213406 TGCCCCATAG
** *
27213416 TCAGGGTAAGAGATTGGGTGTTTCAATTCGCCCCATGATCGGGGTAGGAAATTGCATGCCTTCAA
1 TCAGGGTAAGAGATTGAATGTTTCAATTCACCCCATGATCGGGGTAGGAAATTGCATGCCTTCAA
* * *
27213481 CTCGCCCTCTGATTAGGGTAAAAGGTTGAGTGCTTCAATCTGCCGCATGA
66 CTCGCCCTCTCATTAAGGTAAAAGGTTGAGTGCTTCAATCTACCGCATGA
* * *
27213531 TCGGGGGTAAGAGATTGAATGTTTCAATTCACTCCATGA-CTGGGGTAGGAAATTGCATGTCTTC
1 TC-AGGGTAAGAGATTGAATGTTTCAATTCACCCCATGATC-GGGGTAGGAAATTGCATGCCTTC
* *
27213595 AACTTGCCCTCTCATTAAGGTAAAAGGTTGAGTGCTTCAATCTACCTCATGA
64 AACTCGCCCTCTCATTAAGGTAAAAGGTTGAGTGCTTCAATCTACCGCATGA
27213647 TCAGGGTAAGAGATTG
1 TCAGGGTAAGAGATTG
27213663 GTGTATCTTT
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
115 16 0.14
116 102 0.86
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (115 bp):
TCAGGGTAAGAGATTGAATGTTTCAATTCACCCCATGATCGGGGTAGGAAATTGCATGCCTTCAA
CTCGCCCTCTCATTAAGGTAAAAGGTTGAGTGCTTCAATCTACCGCATGA
Found at i:27213709 original size:78 final size:78
Alignment explanation
Indices: 27213608--27213905 Score: 343
Period size: 78 Copynumber: 3.8 Consensus size: 78
27213598 TTGCCCTCTC
* * *
27213608 ATTAAGGTAAAAG-GTTGAGTGCTTCAATCTA-CCTCATGATCAGGGTAAGAGATTGGTGTATCT
1 ATTAAGGTAAAAGACTGGA-TGCTTCAATCTACCCT-ATGATCAGGGTAAGAGATTGGTGTGTCT
* *
27213671 TTAATTTTCCTTCTG
64 TTAATCTACCTTCTG
* * * *
27213686 CTTAAGGTAAAAGATTGGATGCTTCAATCTACCCTATGATCAGTGTAAGAGATTGGTGTGTCTTC
1 ATTAAGGTAAAAGACTGGATGCTTCAATCTACCCTATGATCAGGGTAAGAGATTGGTGTGTCTTT
*
27213751 AATCTGCCTTCTG
66 AATCTACCTTCTG
* ** * * * *
27213764 ATTAAGGTAAAAGACTAGATATTTCAATCTGCCCCATGAT-AGAGGTAAGAGATTAGT-TGGTTT
1 ATTAAGGTAAAAGACTGGATGCTTCAATCTACCCTATGATCAG-GGTAAGAGATTGGTGT-GTCT
*
27213827 TTAGTCTACCTTCTG
64 TTAATCTACCTTCTG
* * *
27213842 ATTAAGGTAAAAGACTGGATGTTTCAATCTGCCCTATGATCGGGGTAAGAGATTGGTGTGTCTT
1 ATTAAGGTAAAAGACTGGATGCTTCAATCTACCCTATGATCAGGGTAAGAGATTGGTGTGTCTT
27213906 CGCTTCGCTC
Statistics
Matches: 187, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
77 3 0.02
78 176 0.94
79 8 0.04
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (78 bp):
ATTAAGGTAAAAGACTGGATGCTTCAATCTACCCTATGATCAGGGTAAGAGATTGGTGTGTCTTT
AATCTACCTTCTG
Found at i:27213753 original size:40 final size:39
Alignment explanation
Indices: 27213629--27213906 Score: 113
Period size: 38 Copynumber: 7.1 Consensus size: 39
27213619 AGGTTGAGTG
*
27213629 CTTCAATCTA-CCTCATGATCAGGGTAAGAGATTGGTGTAT
1 CTTCAATCTACCCT-ATGATCA-GGTAAGAGATTGGTGTGT
* * * * * * * * *
27213669 CTTTAATTTTCCTTCTGCTTAAGGTAAAAGATTGG-ATG-
1 CTTCAATCTACCCTATG-ATCAGGTAAGAGATTGGTGTGT
27213707 CTTCAATCTACCCTATGATCAGTGTAAGAGATTGGTGTGT
1 CTTCAATCTACCCTATGATCAG-GTAAGAGATTGGTGTGT
* * * * * * * * *
27213747 CTTCAATCTGCCTTCTGATTAAGGTAAAAGACTAG-ATAT
1 CTTCAATCTACCCTATGA-TCAGGTAAGAGATTGGTGTGT
* * * *
27213786 -TTCAATCTGCCCCATGATAGAGGTAAGAGATTAGT-TGGT
1 CTTCAATCTACCCTATGAT-CAGGTAAGAGATTGGTGT-GT
* * * * * * * * *
27213825 TTTTAGTCTACCTTCTGATTAAGGTAAAAGACTGG-ATGT
1 CTTCAATCTACCCTATGA-TCAGGTAAGAGATTGGTGTGT
* *
27213864 -TTCAATCTGCCCTATGATCGGGGTAAGAGATTGGTGTGT
1 CTTCAATCTACCCTATGATC-AGGTAAGAGATTGGTGTGT
27213903 CTTC
1 CTTC
27213907 GCTTCGCTCT
Statistics
Matches: 168, Mismatches: 55, Indels: 30
0.66 0.22 0.12
Matches are distributed among these distances:
37 5 0.03
38 73 0.43
39 11 0.07
40 71 0.42
41 8 0.05
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (39 bp):
CTTCAATCTACCCTATGATCAGGTAAGAGATTGGTGTGT
Found at i:27213794 original size:38 final size:38
Alignment explanation
Indices: 27213748--27213874 Score: 114
Period size: 38 Copynumber: 3.3 Consensus size: 38
27213738 TTGGTGTGTC
27213748 TTCAATCTGCCTTCTGATTAAGGTAAAAGACTAGATAT
1 TTCAATCTGCCTTCTGATTAAGGTAAAAGACTAGATAT
* * * * *
27213786 TTCAATCTGCC-CCATGA-TAGAGGTAAGAGATTAGTTGGTT
1 TTCAATCTGCCTTC-TGATTA-AGGTAAAAGACTAGAT--AT
* * * * *
27213826 TTTAGTCTACCTTCTGATTAAGGTAAAAGACTGGATGT
1 TTCAATCTGCCTTCTGATTAAGGTAAAAGACTAGATAT
27213864 TTCAATCTGCC
1 TTCAATCTGCC
27213875 CTATGATCGG
Statistics
Matches: 66, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
37 3 0.05
38 36 0.55
40 24 0.36
41 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (38 bp):
TTCAATCTGCCTTCTGATTAAGGTAAAAGACTAGATAT
Found at i:27226010 original size:30 final size:29
Alignment explanation
Indices: 27225976--27226190 Score: 91
Period size: 30 Copynumber: 7.2 Consensus size: 29
27225966 AAAATATGGG
27225976 TAAAATCAAAATTTTAGAAAGTCTGAA-GGT
1 TAAAAT-AAAATTTTAGAAAGT-TGAAGGGT
** *
27226006 TAAAATGTAATATTTAGAAAGTTTAAGGGT
1 TAAAATAAAAT-TTTAGAAAGTTGAAGGGT
* * * *
27226036 TAAAATGTAATTTTTAGAAAGATCG-AGAGT
1 TAAAAT-AAAATTTTAGAAAG-TTGAAGGGT
* * * *
27226066 CAAAAATGAAATTTTAGAAAATTTG-GGGGT
1 -TAAAATAAAATTTTAG-AAAGTTGAAGGGT
* *
27226096 CAAAAATGAAAA-TTTAGAAAGTTTAAGGGT
1 -TAAAAT-AAAATTTTAGAAAGTTGAAGGGT
* * * *
27226126 CAAAACT-AAATTTTAGAAAATTTAGGGGT
1 TAAAA-TAAAATTTTAGAAAGTTGAAGGGT
* * * **
27226155 CAAAAATGAATTTTTAGAAAGTTCTA-GGT
1 -TAAAATAAAATTTTAGAAAGTTGAAGGGT
27226184 TAAAATA
1 TAAAATA
27226191 TAATATCTAA
Statistics
Matches: 142, Mismatches: 31, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
28 8 0.06
29 35 0.25
30 85 0.60
31 14 0.10
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.32
Consensus pattern (29 bp):
TAAAATAAAATTTTAGAAAGTTGAAGGGT
Found at i:27226082 original size:60 final size:60
Alignment explanation
Indices: 27226007--27226175 Score: 198
Period size: 59 Copynumber: 2.8 Consensus size: 60
27225997 TCTGAAGGTT
* * * * *
27226007 AAAATGTAATATTTAGAAAGTTTAAGGGT-TAAAATGTAATTTTTAGAAAGATCGAGAGTCA
1 AAAATGAAAT-TTTAGAAAATTTAGGGGTCAAAAATG-AATTTTTAGAAAGATCAAGAGTCA
* ** * * *
27226068 AAAATGAAATTTTAGAAAATTTGGGGGTCAAAAATGAAAATTTAGAAAGTTTAAGGGTCA
1 AAAATGAAATTTTAGAAAATTTAGGGGTCAAAAATGAATTTTTAGAAAGATCAAGAGTCA
*
27226128 AAACT-AAATTTTAGAAAATTTAGGGGTCAAAAATGAATTTTTAGAAAG
1 AAAATGAAATTTTAGAAAATTTAGGGGTCAAAAATGAATTTTTAGAAAG
27226176 TTCTAGGTTA
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
59 40 0.43
60 37 0.40
61 15 0.16
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.31
Consensus pattern (60 bp):
AAAATGAAATTTTAGAAAATTTAGGGGTCAAAAATGAATTTTTAGAAAGATCAAGAGTCA
Found at i:27226148 original size:59 final size:60
Alignment explanation
Indices: 27225977--27226177 Score: 185
Period size: 60 Copynumber: 3.4 Consensus size: 60
27225967 AAATATGGGT
* * * * * * *
27225977 AAAATCAAAATTTTAGAAAGTCTGAA-GGT-TAAAATGTAATATTTAGAAAGTTTAAGGGT-T
1 AAAATGAAAA-TTTAGAAAGT-TTAAGGGTCAAAAATGAAAT-TTTAGAAAATTTAGGGGTCA
** * ** * *
27226037 AAAATGTAATTTTTAGAAAGATCGAGAGTCAAAAATGAAATTTTAGAAAATTTGGGGGTCA
1 AAAATG-AAAATTTAGAAAGTTTAAGGGTCAAAAATGAAATTTTAGAAAATTTAGGGGTCA
*
27226098 AAAATGAAAATTTAGAAAGTTTAAGGGTCAAAACT-AAATTTTAGAAAATTTAGGGGTCA
1 AAAATGAAAATTTAGAAAGTTTAAGGGTCAAAAATGAAATTTTAGAAAATTTAGGGGTCA
**
27226157 AAAATGAATTTTTAGAAAGTT
1 AAAATGAAAATTTAGAAAGTT
27226178 CTAGGTTAAA
Statistics
Matches: 114, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
59 44 0.39
60 53 0.46
61 17 0.15
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (60 bp):
AAAATGAAAATTTAGAAAGTTTAAGGGTCAAAAATGAAATTTTAGAAAATTTAGGGGTCA
Found at i:27231149 original size:19 final size:19
Alignment explanation
Indices: 27231107--27231167 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
27231097 GAATTTCTTA
27231107 AAAATTTCAAAAAATACATA-
1 AAAA-TTCAAAAAATA-ATAG
27231127 AAAATTCAAAAAATAATAG
1 AAAATTCAAAAAATAATAG
*
27231146 AAAAAT-AGAAAAA-AATAG
1 AAAATTCA-AAAAATAATAG
27231164 AAAA
1 AAAA
27231168 AGTGAGAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
18 13 0.34
19 21 0.55
20 4 0.11
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAATTCAAAAAATAATAG
Found at i:27231904 original size:16 final size:16
Alignment explanation
Indices: 27231883--27231917 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
27231873 TAATTAAATA
* *
27231883 ACTAAAATAAAAATTT
1 ACTAAAACAAAAATGT
27231899 ACTAAAACAAAAATGT
1 ACTAAAACAAAAATGT
27231915 ACT
1 ACT
27231918 CATAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (16 bp):
ACTAAAACAAAAATGT
Found at i:27232261 original size:45 final size:41
Alignment explanation
Indices: 27232180--27232263 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 41
27232170 CTACCCCTAA
** *
27232180 AATAAAAAAAAATTTATTTACGTTTTTTAAAATTTTAAATT
1 AATAAAAAAAAATTTATTTACCATTTTAAAAATTTTAAATT
27232221 AATAAAAATAAAATTATATTTTAACCATTTTAAAAATTTTAAA
1 AATAAAAA-AAAATT-TA-TTT-ACCATTTTAAAAATTTTAAA
27232264 AATTTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.22
42 6 0.17
43 2 0.06
44 3 0.08
45 17 0.47
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (41 bp):
AATAAAAAAAAATTTATTTACCATTTTAAAAATTTTAAATT
Found at i:27236180 original size:22 final size:22
Alignment explanation
Indices: 27236154--27236197 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
27236144 AGATTGAAAC
27236154 TTTGAATTTATTCATTAAATCT
1 TTTGAATTTATTCATTAAATCT
27236176 TTTGAATTTATTCATTAAATCT
1 TTTGAATTTATTCATTAAATCT
27236198 ATTAGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTGAATTTATTCATTAAATCT
Found at i:27236846 original size:20 final size:19
Alignment explanation
Indices: 27236823--27236900 Score: 74
Period size: 20 Copynumber: 4.2 Consensus size: 19
27236813 TAACCAAAAT
27236823 AACAACCAAAACAGCAACAA
1 AACAA-CAAAACAGCAACAA
*
27236843 AACAACAAAGATAGCAAC--
1 AACAACAAA-ACAGCAACAA
*
27236861 AA-AA-ATAACAGCAACAA
1 AACAACAAAACAGCAACAA
*
27236878 AACAATAAAACAGCAACTAA
1 AACAACAAAACAGCAAC-AA
27236898 AAC
1 AAC
27236901 GGTAAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
15 7 0.15
16 2 0.04
17 4 0.08
18 4 0.08
19 14 0.29
20 17 0.35
ACGTcount: A:0.65, C:0.23, G:0.06, T:0.05
Consensus pattern (19 bp):
AACAACAAAACAGCAACAA
Found at i:27236871 original size:35 final size:34
Alignment explanation
Indices: 27236832--27236899 Score: 100
Period size: 35 Copynumber: 2.0 Consensus size: 34
27236822 TAACAACCAA
*
27236832 AACAGCAACAAAACAACAAAGATAGCAACAAAAAT
1 AACAGCAACAAAACAACAAA-ACAGCAACAAAAAT
* *
27236867 AACAGCAACAAAACAATAAAACAGCAACTAAAA
1 AACAGCAACAAAACAACAAAACAGCAACAAAAA
27236900 CGGTAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 11 0.37
35 19 0.63
ACGTcount: A:0.66, C:0.21, G:0.07, T:0.06
Consensus pattern (34 bp):
AACAGCAACAAAACAACAAAACAGCAACAAAAAT
Found at i:27236907 original size:20 final size:19
Alignment explanation
Indices: 27236830--27236900 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
27236820 AATAACAACC
*
27236830 AAAACAGCAACAAAACAAC
1 AAAACAGCAACAAAACAAT
*
27236849 AAAGATAGCAAC-AAA-AAT
1 AAA-ACAGCAACAAAACAAT
27236867 --AACAGCAACAAAACAAT
1 AAAACAGCAACAAAACAAT
27236884 AAAACAGCAACTAAAAC
1 AAAACAGCAAC-AAAAC
27236901 GGTAAAAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
15 7 0.16
16 4 0.09
17 3 0.07
18 2 0.05
19 15 0.35
20 12 0.28
ACGTcount: A:0.66, C:0.21, G:0.07, T:0.06
Consensus pattern (19 bp):
AAAACAGCAACAAAACAAT
Found at i:27236914 original size:17 final size:18
Alignment explanation
Indices: 27236892--27236927 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27236882 ATAAAACAGC
*
27236892 AACT-AAAACGGTAAAAA
1 AACTAAAAACAGTAAAAA
27236909 AACTAAAAACAGTAAAAA
1 AACTAAAAACAGTAAAAA
27236927 A
1 A
27236928 TAATACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.69, C:0.11, G:0.08, T:0.11
Consensus pattern (18 bp):
AACTAAAAACAGTAAAAA
Found at i:27236940 original size:21 final size:21
Alignment explanation
Indices: 27236914--27236982 Score: 70
Period size: 22 Copynumber: 3.3 Consensus size: 21
27236904 AAAAAAACTA
*
27236914 AAAACAGTAAAAAATAA-TACC
1 AAAACAGTAAAAAA-AACAACC
**
27236935 AAAACAACAAAAAAAAGCAACC
1 AAAACAGTAAAAAAAA-CAACC
*
27236957 AAAACAGTAAAAAAAGC-ACC
1 AAAACAGTAAAAAAAACAACC
27236977 AAAACA
1 AAAACA
27236983 ATAATATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 11 0.28
21 13 0.32
22 16 0.40
ACGTcount: A:0.70, C:0.19, G:0.06, T:0.06
Consensus pattern (21 bp):
AAAACAGTAAAAAAAACAACC
Found at i:27236957 original size:22 final size:21
Alignment explanation
Indices: 27236932--27236983 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
27236922 AAAAAATAAT
27236932 ACCAAAACAACAAAAAAAAGC
1 ACCAAAACAACAAAAAAAAGC
**
27236953 AACCAAAAC-AGTAAAAAAAGC
1 -ACCAAAACAACAAAAAAAAGC
27236974 ACCAAAACAA
1 ACCAAAACAA
27236984 TAATATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 8 0.30
21 11 0.41
22 8 0.30
ACGTcount: A:0.69, C:0.23, G:0.06, T:0.02
Consensus pattern (21 bp):
ACCAAAACAACAAAAAAAAGC
Found at i:27236970 original size:20 final size:20
Alignment explanation
Indices: 27236870--27236982 Score: 72
Period size: 20 Copynumber: 5.7 Consensus size: 20
27236860 CAAAAATAAC
* *
27236870 AGCAA-CAAAACAATAAAAC
1 AGCAACCAAAACAGTAAAAA
* *
27236889 AGCAACTAAAACGGTAAAAA
1 AGCAACCAAAACAGTAAAAA
* *
27236909 AACTA--AAAACAGTAAAAA
1 AGCAACCAAAACAGTAAAAA
** **
27236927 ATAATACCAAAACAACAAAAAAA
1 AGCA-ACCAAAAC-A-GTAAAAA
27236950 AGCAACCAAAACAGTAAAAAA
1 AGCAACCAAAACAGT-AAAAA
27236971 AGC-ACCAAAACA
1 AGCAACCAAAACA
27236983 ATAATATAAT
Statistics
Matches: 71, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
18 13 0.18
19 6 0.08
20 22 0.31
21 14 0.20
22 9 0.13
23 7 0.10
ACGTcount: A:0.67, C:0.19, G:0.07, T:0.07
Consensus pattern (20 bp):
AGCAACCAAAACAGTAAAAA
Found at i:27251996 original size:146 final size:146
Alignment explanation
Indices: 27251818--27252112 Score: 590
Period size: 146 Copynumber: 2.0 Consensus size: 146
27251808 TTACTATAAT
27251818 ATTACACTTAAAAATTATATCATATAGAACCCAATAAATGACTTCCTGAAAAAAAAAATTAAAAA
1 ATTACACTTAAAAATTATATCATATAGAACCCAATAAATGACTTCCTGAAAAAAAAAATTAAAAA
27251883 ATTTAACTGTGTGTACAAGATATATGTGCATTATAATTACGTTAGTATATTAAAAAAATCATATT
66 ATTTAACTGTGTGTACAAGATATATGTGCATTATAATTACGTTAGTATATTAAAAAAATCATATT
27251948 CATATTGATTTTGGTG
131 CATATTGATTTTGGTG
27251964 ATTACACTTAAAAATTATATCATATAGAACCCAATAAATGACTTCCTGAAAAAAAAAATTAAAAA
1 ATTACACTTAAAAATTATATCATATAGAACCCAATAAATGACTTCCTGAAAAAAAAAATTAAAAA
27252029 ATTTAACTGTGTGTACAAGATATATGTGCATTATAATTACGTTAGTATATTAAAAAAATCATATT
66 ATTTAACTGTGTGTACAAGATATATGTGCATTATAATTACGTTAGTATATTAAAAAAATCATATT
27252094 CATATTGATTTTGGTG
131 CATATTGATTTTGGTG
27252110 ATT
1 ATT
27252113 TATTTTTAAT
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 149 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (146 bp):
ATTACACTTAAAAATTATATCATATAGAACCCAATAAATGACTTCCTGAAAAAAAAAATTAAAAA
ATTTAACTGTGTGTACAAGATATATGTGCATTATAATTACGTTAGTATATTAAAAAAATCATATT
CATATTGATTTTGGTG
Found at i:27265596 original size:70 final size:70
Alignment explanation
Indices: 27265493--27265628 Score: 173
Period size: 70 Copynumber: 1.9 Consensus size: 70
27265483 GCCACACAAC
* * *
27265493 CGTGTGTTAGGCCATGTGCCAAACCATATGAGTCACACGGCCGTGTGTCAGACTGTGTGAGCCAC
1 CGTGTGTTAGGCCATGTGCCAAACCATATGAGTCACACGGCCATGTGTCAAACCGTGTGAGCCAC
27265558 ATGGT
66 ATGGT
* ** * * ** *
27265563 CGTGTGTTAGGTCATGTGCCTGACCGTGTGAGTCACGTGGTCATGTGTCAAACCGTGTGAGCCAC
1 CGTGTGTTAGGCCATGTGCCAAACCATATGAGTCACACGGCCATGTGTCAAACCGTGTGAGCCAC
27265628 A
66 A
27265629 CGGGTTTATG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 55 1.00
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.26
Consensus pattern (70 bp):
CGTGTGTTAGGCCATGTGCCAAACCATATGAGTCACACGGCCATGTGTCAAACCGTGTGAGCCAC
ATGGT
Found at i:27275321 original size:40 final size:41
Alignment explanation
Indices: 27275210--27275361 Score: 168
Period size: 41 Copynumber: 3.7 Consensus size: 41
27275200 TTCATAAATG
* *
27275210 CCGCAAAAGGTAA-AGCAATAGCGGCGTTTATGGGA-AAAATA
1 CCGCAAAAGGTAAGAGCATTAGCGGCGTTTAT--GACAAAAGA
* * *
27275251 CAGTAAAAGGTAAGAGCATTAGCGGTGTTTATGACAAAACG-
1 CCGCAAAAGGTAAGAGCATTAGCGGCGTTTATGACAAAA-GA
* *
27275292 CCGCAAAAGG-AAGAGCATTAGTGGCGTTTATGAGAAAAGA
1 CCGCAAAAGGTAAGAGCATTAGCGGCGTTTATGACAAAAGA
**
27275332 CCGCAAAAGGTAAGAGCAACAGCGGCGTTT
1 CCGCAAAAGGTAAGAGCATTAGCGGCGTTT
27275362 TCCCATAAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 37 0.40
41 39 0.42
42 16 0.17
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (41 bp):
CCGCAAAAGGTAAGAGCATTAGCGGCGTTTATGACAAAAGA
Done.