Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 106 of 144
Found at i:24866326 original size:58 final size:57
Alignment explanation
Indices: 24866175--24866327 Score: 184
Period size: 58 Copynumber: 2.6 Consensus size: 57
24866165 ACTCGGGGGC
*
24866175 AAAATGGTAGATTTTGGTGAAA-TCGGGGTTAAAAATGGGATTTAGGAAAGTTTAAGGGT
1 AAAATGGTA-ATTTT-ATGAAATTCGGGG-TAAAAATGGGATTTAGGAAAGTTTAAGGGT
* * * * *
24866234 AAAATGGTAATTTTAGTGAAATTAGGGTTTAAAATGGGATTTAGGGAAGTTTGAGGGT
1 AAAATGGTAATTTTA-TGAAATTCGGGGTAAAAATGGGATTTAGGAAAGTTTAAGGGT
24866292 AAAATGGTAATTTT-TGAAAGTTTCGGGGTAAAAATG
1 AAAATGGTAATTTTATGAAA--TTCGGGGTAAAAATG
24866328 CAATTTTTTG
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
56 5 0.06
58 63 0.78
59 13 0.16
ACGTcount: A:0.36, C:0.01, G:0.30, T:0.33
Consensus pattern (57 bp):
AAAATGGTAATTTTATGAAATTCGGGGTAAAAATGGGATTTAGGAAAGTTTAAGGGT
Found at i:24866381 original size:30 final size:30
Alignment explanation
Indices: 24866280--24866518 Score: 240
Period size: 30 Copynumber: 8.0 Consensus size: 30
24866270 GGATTTAGGG
* *
24866280 AAGTTTGAGGGT-AAAATGGTAATTTTTG-A
1 AAGTTTTAGGGTCAAAAT-GTAATTTTGGAA
** * *
24866309 AAGTTTCGGGGTAAAAATGCAATTTTTTGG-A
1 AAGTTTTAGGGTCAAAATGTAA--TTTTGGAA
* * *
24866340 AA-TTTTGGGGTCAAAATATGATTTTGGAA
1 AAGTTTTAGGGTCAAAATGTAATTTTGGAA
*
24866369 AAGCTTTAGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTAGGGTCAAAATGTAATTTTGGAA
*
24866399 AAGTTTTAGGGTCAAAATGTAATTTCT-AAA
1 AAGTTTTAGGGTCAAAATGTAATTT-TGGAA
*
24866429 AAGTTTTAGGGTCAAAATGTAATTTT-TAGA
1 AAGTTTTAGGGTCAAAATGTAATTTTGGA-A
* *
24866459 AAGTTTTAGGGTTAAAATATAATTTTGGAA
1 AAGTTTTAGGGTCAAAATGTAATTTTGGAA
24866489 AAG-TTTAGGGGTCAAAATGTAATTTCTGGA
1 AAGTTTTA-GGGTCAAAATGTAATTT-TGGA
24866519 CAATTTAAGG
Statistics
Matches: 179, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.03
29 22 0.12
30 137 0.77
31 14 0.08
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (30 bp):
AAGTTTTAGGGTCAAAATGTAATTTTGGAA
Found at i:24867247 original size:14 final size:14
Alignment explanation
Indices: 24867228--24867255 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24867218 CAAAATCATC
24867228 CCAGATCTGGAAAT
1 CCAGATCTGGAAAT
24867242 CCAGATCTGGAAAT
1 CCAGATCTGGAAAT
24867256 TTCTAAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (14 bp):
CCAGATCTGGAAAT
Found at i:24868613 original size:28 final size:28
Alignment explanation
Indices: 24868570--24868655 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 28
24868560 ATTTTTTTAA
24868570 AAATATTTATATTATATTATTTTAATATT-
1 AAATATTT-TA-TATATTATTTTAATATTG
* *
24868599 TAATAATTTTATATATT-TTTTATTTATTG
1 AAAT-ATTTTATATATTATTTTA-ATATTG
* *
24868628 AAATTTTTTATATAGTCATTTTAATATT
1 AAATATTTTATATA-TTATTTTAATATT
24868656 ATTTTAATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
27 5 0.11
28 19 0.41
29 13 0.28
30 9 0.20
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.60
Consensus pattern (28 bp):
AAATATTTTATATATTATTTTAATATTG
Found at i:24868746 original size:15 final size:16
Alignment explanation
Indices: 24868726--24868755 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24868716 TCTAAATTAC
24868726 ATAATAT-ATATAAAA
1 ATAATATAATATAAAA
24868741 ATAATATAATATAAA
1 ATAATATAATATAAA
24868756 GTATTATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAATATAATATAAAA
Found at i:24872244 original size:39 final size:39
Alignment explanation
Indices: 24872200--24872396 Score: 201
Period size: 39 Copynumber: 5.2 Consensus size: 39
24872190 CAATGTCTTC
* *
24872200 GCCAGTTTAGTATAG-CATTGCAGTGGTTACAGTATCACT
1 GCCAGTTCAGTAT-GCCATTGCAGTGTTTACAGTATCACT
* * *
24872239 ACCAGTTCAGTAGGCCATTGTAGTGTTTACAG-----CT
1 GCCAGTTCAGTATGCCATTGCAGTGTTTACAGTATCACT
*
24872273 GCCAGTTCAGTATGCCATTGCAGTGTTTACAGTGTCACT
1 GCCAGTTCAGTATGCCATTGCAGTGTTTACAGTATCACT
* *
24872312 GCCAGTTCAGTATGCCATTACAGTGTTTATAGTATCACT
1 GCCAGTTCAGTATGCCATTGCAGTGTTTACAGTATCACT
* * ** *
24872351 GCCAGTTTAGTATGGC-TCCACAGTGTTTACAGTGTCACT
1 GCCAGTTCAGTATGCCAT-TGCAGTGTTTACAGTATCACT
*
24872390 GCTAGTT
1 GCCAGTT
24872397 TAATATATTT
Statistics
Matches: 134, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
34 31 0.23
38 2 0.01
39 101 0.75
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (39 bp):
GCCAGTTCAGTATGCCATTGCAGTGTTTACAGTATCACT
Found at i:24872295 original size:73 final size:73
Alignment explanation
Indices: 24872200--24872340 Score: 203
Period size: 73 Copynumber: 1.9 Consensus size: 73
24872190 CAATGTCTTC
* **
24872200 GCCAGTTTAGTATAGCATTGCAGTGGTTACAGTATCACTACCAGTTCAGTAGGCCATTGTAGTGT
1 GCCAGTTCAGTATAGCATTGCAGTGGTTACAGTATCACTACCAGTTCAGTAGGCCATTACAGTGT
24872265 TTACAGCT
66 TTACAGCT
* * * *
24872273 GCCAGTTCAGTAT-GCCATTGCAGTGTTTACAGTGTCACTGCCAGTTCAGTATGCCATTACAGTG
1 GCCAGTTCAGTATAG-CATTGCAGTGGTTACAGTATCACTACCAGTTCAGTAGGCCATTACAGTG
24872337 TTTA
65 TTTA
24872341 TAGTATCACT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 1 0.02
73 59 0.98
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (73 bp):
GCCAGTTCAGTATAGCATTGCAGTGGTTACAGTATCACTACCAGTTCAGTAGGCCATTACAGTGT
TTACAGCT
Found at i:24873973 original size:11 final size:11
Alignment explanation
Indices: 24873957--24873999 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
24873947 TCAGCATCGA
24873957 CCACGTCAGCT
1 CCACGTCAGCT
24873968 CCACGTCA-CT
1 CCACGTCAGCT
* *
24873978 GCCACATCAGCG
1 -CCACGTCAGCT
24873990 CCACGTCAGC
1 CCACGTCAGC
24874000 CATGTGACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 2 0.07
11 24 0.89
12 1 0.04
ACGTcount: A:0.21, C:0.47, G:0.19, T:0.14
Consensus pattern (11 bp):
CCACGTCAGCT
Found at i:24884292 original size:159 final size:159
Alignment explanation
Indices: 24884003--24884327 Score: 605
Period size: 159 Copynumber: 2.0 Consensus size: 159
24883993 TTGTTTGTGG
*
24884003 ATTTCTTTTTGGAGTTACATTCATGTGTGCTGACCTGTAGGGTGGCTTCTATCCAGGTTCAAATT
1 ATTTCTTTTTGGAGTTACATTCATGTGTGCTGACCTGCAGGGTGGCTTCTATCCAGGTTCAAATT
24884068 TGTTGGCTGTTGTTGAATTCCTTGTTTCTAGGGTATATCTCATTAATCTTTATTGACTTTAATTG
66 TGTTGGCTGTTGTTGAATTCCTTGTTTCTAGGGTATATCTCATTAATCTTTATTGACTTTAATTG
24884133 ATGTTCTATAGATGGAATCATGTCATCGT
131 ATGTTCTATAGATGGAATCATGTCATCGT
* * *
24884162 ATTTCTTTTTGGAGTTACATTCATGTGTGTTGATCTGCAGGGTGGCTTCTGTCCAGGTTCAAATT
1 ATTTCTTTTTGGAGTTACATTCATGTGTGCTGACCTGCAGGGTGGCTTCTATCCAGGTTCAAATT
*
24884227 TGTTGGTTGTTGTTGAATTCCTTGTTTCTAGGGTATATCTCATTAATCTTTATTGACTTTAATTG
66 TGTTGGCTGTTGTTGAATTCCTTGTTTCTAGGGTATATCTCATTAATCTTTATTGACTTTAATTG
24884292 ATGTTCTATAGATGGAATCATGTCATCGT
131 ATGTTCTATAGATGGAATCATGTCATCGT
24884321 ATTTCTT
1 ATTTCTT
24884328 GCTTGGAACA
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
159 161 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.46
Consensus pattern (159 bp):
ATTTCTTTTTGGAGTTACATTCATGTGTGCTGACCTGCAGGGTGGCTTCTATCCAGGTTCAAATT
TGTTGGCTGTTGTTGAATTCCTTGTTTCTAGGGTATATCTCATTAATCTTTATTGACTTTAATTG
ATGTTCTATAGATGGAATCATGTCATCGT
Found at i:24885875 original size:12 final size:12
Alignment explanation
Indices: 24885860--24885902 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
24885850 GTTCGTAAAC
24885860 ATGTTCAATTAT
1 ATGTTCAATTAT
*
24885872 ATGTTC-ATGAAT
1 ATGTTCAAT-TAT
24885884 ATGTTCAATTAT
1 ATGTTCAATTAT
24885896 ATGTTCA
1 ATGTTCA
24885903 TGAACATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 2 0.07
12 23 0.85
13 2 0.07
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (12 bp):
ATGTTCAATTAT
Found at i:24885876 original size:24 final size:24
Alignment explanation
Indices: 24885857--24885934 Score: 122
Period size: 24 Copynumber: 3.3 Consensus size: 24
24885847 ATTGTTCGTA
24885857 AACATGTTCAATTATATGTTCATG
1 AACATGTTCAATTATATGTTCATG
*
24885881 AATATGTTCAATTATATGTTCATG
1 AACATGTTCAATTATATGTTCATG
**
24885905 AACATGTTCGTTTA-ATGTTCATG
1 AACATGTTCAATTATATGTTCATG
24885928 AACATGT
1 AACATGT
24885935 CATGTTTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 16 0.32
24 34 0.68
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (24 bp):
AACATGTTCAATTATATGTTCATG
Found at i:24885911 original size:12 final size:12
Alignment explanation
Indices: 24885872--24885938 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
24885862 GTTCAATTAT
*
24885872 ATGTTCATGAAT
1 ATGTTCATGAAC
* *
24885884 ATGTTCAAT-TAT
1 ATGTTC-ATGAAC
24885896 ATGTTCATGAAC
1 ATGTTCATGAAC
* **
24885908 ATGTTCGTTTA-
1 ATGTTCATGAAC
24885919 ATGTTCATGAAC
1 ATGTTCATGAAC
24885931 ATG-TCATG
1 ATGTTCATG
24885939 TTTGTTTAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
11 15 0.35
12 26 0.60
13 2 0.05
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (12 bp):
ATGTTCATGAAC
Found at i:24887573 original size:20 final size:20
Alignment explanation
Indices: 24887550--24887593 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
24887540 TTATTAAATT
24887550 TTATTAAAAATTACAAAAAA
1 TTATTAAAAATTACAAAAAA
* * *
24887570 TTATTTAAAATTATATAAAA
1 TTATTAAAAATTACAAAAAA
24887590 TTAT
1 TTAT
24887594 GAAGAAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TTATTAAAAATTACAAAAAA
Found at i:24889938 original size:13 final size:13
Alignment explanation
Indices: 24889920--24889945 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24889910 TGCCCAAGGT
24889920 CACTAAACTATTA
1 CACTAAACTATTA
24889933 CACTAAACTATTA
1 CACTAAACTATTA
24889946 GTAAATTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
CACTAAACTATTA
Found at i:24892239 original size:29 final size:29
Alignment explanation
Indices: 24892174--24892403 Score: 192
Period size: 30 Copynumber: 7.7 Consensus size: 29
24892164 CTCAAAAGGT
* * * **
24892174 CCCCAAACCTTTCCAAAATCATGTTTTAA
1 CCCCAAACTTTTCTAAAATTACATTTTAA
24892203 CCTCCAAACTTTTCTAAAATTACATTTTAA
1 CC-CCAAACTTTTCTAAAATTACATTTTAA
* *
24892233 CCCCAAACTTTCCTAAAATTACATTTTAG
1 CCCCAAACTTTTCTAAAATTACATTTTAA
* *
24892262 CCCCTAAACTTTTCCAAAATTACATTTTGA
1 CCCC-AAACTTTTCTAAAATTACATTTTAA
* * **
24892292 CCCCTAAACATTCCTAATTTTACATTTTAA
1 CCCC-AAACTTTTCTAAAATTACATTTTAA
* * * * *
24892322 CTCCTAAACTTTTCCAAAAATCATATTTTGA
1 C-CCCAAACTTTT-CTAAAATTACATTTTAA
* *
24892353 CCCTCAAACTTTTCCAAAATCACATTTTAA
1 CCC-CAAACTTTTCTAAAATTACATTTTAA
*
24892383 CCCTCGAACTTCTT-TAAAATT
1 CCC-CAAACTT-TTCTAAAATT
24892404 TTATTTTCAT
Statistics
Matches: 162, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
29 31 0.19
30 107 0.66
31 24 0.15
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (29 bp):
CCCCAAACTTTTCTAAAATTACATTTTAA
Found at i:24892333 original size:60 final size:59
Alignment explanation
Indices: 24892197--24892383 Score: 216
Period size: 60 Copynumber: 3.1 Consensus size: 59
24892187 CAAAATCATG
* * *
24892197 TTTTAACCTCC-AAACTTTTCTAAAATTACATTTTAACCCCAAACTTTCCTAAAATTACA
1 TTTTAA-CTCCTAAACTTTTCCAAAATTACATTTTGACCCCAAACATTCCTAAAATTACA
* * **
24892256 TTTTAGCCCCTAAACTTTTCCAAAATTACATTTTGACCCCTAAACATTCCTAATTTTACA
1 TTTTAACTCCTAAACTTTTCCAAAATTACATTTTGACCCC-AAACATTCCTAAAATTACA
* * * *
24892316 TTTTAACTCCTAAACTTTTCCAAAAATCATATTTTGACCCTCAAACTTTTCC-AAAATCACA
1 TTTTAACTCCTAAACTTTTCC-AAAATTACATTTTGACCC-CAAAC-ATTCCTAAAATTACA
24892377 TTTTAAC
1 TTTTAAC
24892384 CCTCGAACTT
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
58 3 0.03
59 32 0.30
60 35 0.32
61 33 0.31
62 5 0.05
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.38
Consensus pattern (59 bp):
TTTTAACTCCTAAACTTTTCCAAAATTACATTTTGACCCCAAACATTCCTAAAATTACA
Found at i:24892364 original size:91 final size:89
Alignment explanation
Indices: 24892178--24892385 Score: 240
Period size: 89 Copynumber: 2.3 Consensus size: 89
24892168 AAAGGTCCCC
* ** * * **
24892178 AAACCTTTCCAAAATCATGTTTTAACCTCC-AAACTTTTCTAAAATTACATTTTAACCCCAAACT
1 AAACTTTTCCAAAATCACATTTTAACC-CCTAAACATTCCTAATTTTACATTTTAACCCCAAACT
* * *
24892242 TTCCTAAAATTACATTTTAGCCCCT
65 TTCCAAAAATCACATTTTAGACCCT
* * *
24892267 AAACTTTTCCAAAATTACATTTTGACCCCTAAACATTCCTAATTTTACATTTTAACTCCTAAACT
1 AAACTTTTCCAAAATCACATTTTAACCCCTAAACATTCCTAATTTTACATTTTAAC-CCCAAAC-
*
24892332 TTTCCAAAAATCATATTTT-GACCCT
64 TTTCCAAAAATCACATTTTAGACCCT
24892357 CAAACTTTTCCAAAATCACATTTTAACCC
1 -AAACTTTTCCAAAATCACATTTTAACCC
24892386 TCGAACTTCT
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
88 2 0.02
89 44 0.44
90 11 0.11
91 42 0.42
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (89 bp):
AAACTTTTCCAAAATCACATTTTAACCCCTAAACATTCCTAATTTTACATTTTAACCCCAAACTT
TCCAAAAATCACATTTTAGACCCT
Found at i:24898520 original size:99 final size:99
Alignment explanation
Indices: 24898340--24898565 Score: 380
Period size: 99 Copynumber: 2.3 Consensus size: 99
24898330 ACCATGAAAA
24898340 CATGAAGGGAAAGATTTAAGCCGCAACGGAGAATCCAGTACCACGAAGATAATGGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCGCAACGGAGAATCCAGTACCACGAAGATAATGGAGGGAAAGGT
**
24898405 TTAAGTCGTAACGGCGAACCTTGTACCTCAGAAG
66 TTAAGTCACAACGGCGAACCTTGTACCTCAGAAG
* * * *
24898439 CATGAAGGGAAAGATCTAAGCCGCAACGGTGAATCCAGTATCACGAAGATAATTGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCGCAACGGAGAATCCAGTACCACGAAGATAATGGAGGGAAAGGT
* *
24898504 TTAAGTCACAATGGCGAACCTTGTACCTCGGAAG
66 TTAAGTCACAACGGCGAACCTTGTACCTCAGAAG
24898538 CATGAAGGGAAAGATTTAAGCCGCAACG
1 CATGAAGGGAAAGATTTAAGCCGCAACG
24898566 ACGAACCTTG
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 118 1.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (99 bp):
CATGAAGGGAAAGATTTAAGCCGCAACGGAGAATCCAGTACCACGAAGATAATGGAGGGAAAGGT
TTAAGTCACAACGGCGAACCTTGTACCTCAGAAG
Found at i:24898592 original size:148 final size:147
Alignment explanation
Indices: 24898395--24898713 Score: 478
Period size: 148 Copynumber: 2.2 Consensus size: 147
24898385 AAGATAATGG
* * * *
24898395 AGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGC
1 AGGGAAAGATTTAAGCCGCAACGACGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGC
* * * * *
24898460 CGCAACGGTGAATCCAGTATCACGAA-GATAATTGAGGGAAAGGTTTAAGTCACAATGGCGAACC
66 CGCAACGGCGAATCCAGTACCAC-AAGGAT-ATGGAGAGAAAGGTTTAAGTCACAATAGCGAACC
* *
24898524 TTGTACCTCGGAAGCATGA
129 TTGTACCTCAGAAACATGA
* *
24898543 AGGGAAAGATTTAAGCCGCAACGACGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGC
1 AGGGAAAGATTTAAGCCGCAACGACGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGC
* *
24898608 CGCAACGGCGAATCTAGTACCACAAGGATATGGAGAGAAAGGTTTAAGTCGCAATAGCGAACCTT
66 CGCAACGGCGAATCCAGTACCACAAGGATATGGAGAGAAAGGTTTAAGTCACAATAGCGAACCTT
24898673 GTACCTCAGAAACATGA
131 GTACCTCAGAAACATGA
24898690 AGGGAAAGATTTAAGCCGCAACGA
1 AGGGAAAGATTTAAGCCGCAACGA
24898714 AAAATCCAGT
Statistics
Matches: 155, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
147 73 0.47
148 82 0.53
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (147 bp):
AGGGAAAGATTTAAGCCGCAACGACGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGC
CGCAACGGCGAATCCAGTACCACAAGGATATGGAGAGAAAGGTTTAAGTCACAATAGCGAACCTT
GTACCTCAGAAACATGA
Found at i:24898726 original size:147 final size:148
Alignment explanation
Indices: 24898421--24898726 Score: 438
Period size: 147 Copynumber: 2.1 Consensus size: 148
24898411 CGTAACGGCG
* * *
24898421 AACCTTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGCCGCAACGGTGAATCCAGTATCACGAA
1 AACCTAGTACCTCAGAAGCATGAAGGGAAAGATCTAAGCCGCAACGGCGAATCCAGTACCACGAA
* * * * *
24898486 GATAATTGAGGGAAAGGTTTAAGTCACAATGGCGAACCTTGTACCTCGGAAGCATGAAGGGAAAG
66 GATAATGGAGAGAAAGGTTTAAGTCACAATAGCGAACCTTGTACCTCAGAAACATGAAGGGAAAG
**
24898551 ATTTAAGCCGCAACGACG
131 ATTTAAGCCGCAACGAAA
* * * *
24898569 AACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCAC-AA
1 AACCTAGTACCTCAGAAGCATGAAGGGAAAGATCTAAGCCGCAACGGCGAATCCAGTACCACGAA
*
24898633 GGAT-ATGGAGAGAAAGGTTTAAGTCGCAATAGCGAACCTTGTACCTCAGAAACATGAAGGGAAA
66 -GATAATGGAGAGAAAGGTTTAAGTCACAATAGCGAACCTTGTACCTCAGAAACATGAAGGGAAA
24898697 GATTTAAGCCGCAACGAAA
130 GATTTAAGCCGCAACGAAA
24898716 AATCC-AGTACC
1 AA-CCTAGTACC
24898727 ACAAGGATAT
Statistics
Matches: 142, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
147 80 0.56
148 62 0.44
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (148 bp):
AACCTAGTACCTCAGAAGCATGAAGGGAAAGATCTAAGCCGCAACGGCGAATCCAGTACCACGAA
GATAATGGAGAGAAAGGTTTAAGTCACAATAGCGAACCTTGTACCTCAGAAACATGAAGGGAAAG
ATTTAAGCCGCAACGAAA
Found at i:24898841 original size:49 final size:50
Alignment explanation
Indices: 24898341--24898844 Score: 385
Period size: 49 Copynumber: 10.2 Consensus size: 50
24898331 CCATGAAAAC
*
24898341 ATGAAGGGAAAGATTTAAGCCGCAACGGAGAATCC-AGTACCAC-GAAGAT
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAA-CCTAGTACCACGGAAGAT
* * * * * * * *
24898390 AATGGAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAG-C
1 -ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
* * *
24898440 ATGAAGGGAAAGATCTAAGCCGCAACGGTGAATCC-AGTATCAC-GAAGAT
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAA-CCTAGTACCACGGAAGAT
* * * * * * *
24898489 AATTG-AGGGAAAGGTTTAAGTCACAATGGCGAACCTTGTACCTCGGAAG-C
1 -A-TGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
* * * *
24898539 ATGAAGGGAAAGATTTAAGCCGCAACGACGAACCTTGTACCTCGGAAG-C
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
*
24898588 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCAC--AAGGAT
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAA-GAT
* * * * ** * * * *
24898637 ATGGAGAGAAAGGTTTAAGTCGCAATAGCGAACCTTGTACCTCAGAA-AC
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
***
24898686 ATGAAGGGAAAGATTTAAGCCGCAACGAAAAATCC-AGTACCAC--AAGGAT
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAA-CCTAGTACCACGGAA-GAT
* * * * * ** * *
24898735 ATGGAGAGAAAGGTTTAAGTCGCAATGGCGAACCTTTTACCTCGGAAG-G
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
24898784 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCC-AGTACCAC-GAAGAT
1 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAA-CCTAGTACCACGGAAGAT
*
24898833 ATGGAGGGAAAG
1 ATGAAGGGAAAG
24898845 GCTACGACCG
Statistics
Matches: 351, Mismatches: 82, Indels: 43
0.74 0.17 0.09
Matches are distributed among these distances:
47 4 0.01
48 13 0.04
49 252 0.72
50 68 0.19
51 14 0.04
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.17
Consensus pattern (50 bp):
ATGAAGGGAAAGATTTAAGCCGCAACGGCGAACCTAGTACCACGGAAGAT
Found at i:24898857 original size:98 final size:98
Alignment explanation
Indices: 24898546--24898866 Score: 441
Period size: 98 Copynumber: 3.3 Consensus size: 98
24898536 AGCATGAAGG
*
24898546 GAAAGATTTAAGCCGCAAC-GACGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCG
1 GAAAGGTTTAAGCCGCAACAG-CGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCG
*
24898610 CAACGGCGAATCTAGTACCACAAGGATATGGAGA
65 CAACGGCGAATCCAGTACCACAAGGATATGGAGA
* * * *
24898644 GAAAGGTTTAAGTCGCAATAGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGC
1 GAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCGC
***
24898709 AACGAAAAATCCAGTACCACAAGGATATGGAGA
66 AACGGCGAATCCAGTACCACAAGGATATGGAGA
* ** * *
24898742 GAAAGGTTTAAGTCGCAATGGCGAACCTTTTACCTCGGAAGGATGAAGGGAAAGATTTAAGCCGC
1 GAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCGC
*
24898807 AACGGCGAATCCAGTACCACGAA-GATATGGAGG
66 AACGGCGAATCCAGTACCAC-AAGGATATGGAGA
* *
24898840 GAAAGG-CTACGACCGCAACAGCGAACC
1 GAAAGGTTTAAG-CCGCAACAGCGAACC
24898867 CGATACCTTA
Statistics
Matches: 197, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
97 3 0.02
98 191 0.97
99 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.16
Consensus pattern (98 bp):
GAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGCCGC
AACGGCGAATCCAGTACCACAAGGATATGGAGA
Found at i:24899665 original size:17 final size:15
Alignment explanation
Indices: 24899641--24899674 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24899631 CCGGCCATGG
*
24899641 AAAATAA-AACCAAA
1 AAAATAATAAACAAA
24899655 AAAATAATAAACAAA
1 AAAATAATAAACAAA
24899670 AAAAT
1 AAAAT
24899675 GAGATACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAATAATAAACAAA
Found at i:24901187 original size:30 final size:30
Alignment explanation
Indices: 24901151--24901536 Score: 412
Period size: 30 Copynumber: 13.0 Consensus size: 30
24901141 CTTAAGAGGT
* * *
24901151 CCCTAAACCTTTCCAAAATCACGTTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* **
24901181 CCCTAAATTTTTTTAAAATTACATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
*
24901211 CCTTAAAC--TTCCTAAAATTACATTTTAAC
1 CCCTAAACTTTTCC-AAAATTACATTTTAAC
*
24901240 CCTTAAACTTTTCCAAAATTACATTTTAA-
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* *
24901269 CTCTAAA-TGTTTCTAAAATTACATTTTAA-
1 CCCTAAACT-TTTCCAAAATTACATTTTAAC
* *
24901298 CCCTAAACATTTCAAAAATTACATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
*
24901328 CCCTAAAC--TTCCTAAAATTACATTTCAAC
1 CCCTAAACTTTTCC-AAAATTACATTTTAAC
*
24901357 CCTTAAACTTTTCCAAAATTACATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* * *
24901387 TCATAAAC-TTTCTTAAAATTACATTTTAAC
1 CCCTAAACTTTTC-CAAAATTACATTTTAAC
* * * *
24901417 CCATAAACTTTTCCAAAATCATATTTTGAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
* *
24901447 CCCTAAACTTTTCCAAAATTACATTGTAATG
1 CCCTAAACTTTTCCAAAATTACATTTTAA-C
* * * *
24901478 CCC-AAACTTTTCCAAAATCATATTTTGAT
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
*
24901507 CCCTAAACTTTTCCAAAATCACATTTTAAC
1 CCCTAAACTTTTCCAAAATTACATTTTAAC
24901537 ACTCGAATTT
Statistics
Matches: 301, Mismatches: 42, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
28 6 0.02
29 102 0.34
30 178 0.59
31 15 0.05
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (30 bp):
CCCTAAACTTTTCCAAAATTACATTTTAAC
Found at i:24901549 original size:30 final size:30
Alignment explanation
Indices: 24901515--24901578 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
24901505 ATCCCTAAAC
*
24901515 TTTTCCAAAATCACATTTTAACACTCGAAT
1 TTTTCCAAAATCACATTTCAACACTCGAAT
* * *
24901545 TTTTCCAAAATCATATTTCGACCCTCGAAT
1 TTTTCCAAAATCACATTTCAACACTCGAAT
24901575 TTTT
1 TTTT
24901579 TTAAAATTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
TTTTCCAAAATCACATTTCAACACTCGAAT
Found at i:24904998 original size:28 final size:28
Alignment explanation
Indices: 24904957--24905028 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
24904947 ATTGGAGTTG
* *
24904957 AAAATGAGATTTTTGGATACTC-AGGGGC
1 AAAATGATAATTTTGGATACTCGA-GGGC
*
24904985 AAAATGATAATTTTGGATGCTCGAGGGC
1 AAAATGATAATTTTGGATACTCGAGGGC
* *
24905013 AAAGTGGTAATTTTGG
1 AAAATGATAATTTTGG
24905029 GAATGTTCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (28 bp):
AAAATGATAATTTTGGATACTCGAGGGC
Found at i:24905103 original size:58 final size:59
Alignment explanation
Indices: 24905040--24905173 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 59
24905030 AATGTTCGGA
* * * *
24905040 GTCAAAAATAGAATTTTCAGACATTTGGGGA-TAAAATGGTAA-TTTTGGAAAAATCAAG
1 GTCAAAAATGGAATTTTCAGA-AGTTCGAGAGTAAAATGGTAATTTTTGGAAAAATCAAG
** * *
24905098 GTCAAAAATGGAATTTTTGGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAAAGTCGAG
1 GTCAAAAATGGAATTTTCAGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAAAATCAAG
*
24905157 ATCAAAAATGGAATTTT
1 GTCAAAAATGGAATTTT
24905174 TGGAAGTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 6 0.09
58 29 0.45
59 30 0.46
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (59 bp):
GTCAAAAATGGAATTTTCAGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAAAATCAAG
Found at i:24905108 original size:30 final size:30
Alignment explanation
Indices: 24905072--24905208 Score: 122
Period size: 30 Copynumber: 4.6 Consensus size: 30
24905062 ATTTGGGGAT
*
24905072 AAAATGGTAA-TTTTGGAAAAATCAAGGTCA
1 AAAATGG-AATTTTTGGAAAAATCGAGGTCA
**
24905102 AAAATGGAATTTTTGG-AAGTTCGAGAGT--
1 AAAATGGAATTTTTGGAAAAATCGAG-GTCA
* *
24905130 AAAATGGTAATTTTTGGAAAAGTCGAGATCA
1 AAAATGG-AATTTTTGGAAAAATCGAGGTCA
*** *
24905161 AAAATGGAATTTTTGGAAGTTTTCG-GGTAA
1 AAAATGGAATTTTTGGAA-AAATCGAGGTCA
24905191 AAAATGGAATTTTTGGAA
1 AAAATGGAATTTTTGGAA
24905209 GTTTTAGGGT
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
28 7 0.08
29 18 0.20
30 54 0.61
31 10 0.11
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.31
Consensus pattern (30 bp):
AAAATGGAATTTTTGGAAAAATCGAGGTCA
Found at i:24905192 original size:59 final size:59
Alignment explanation
Indices: 24905071--24905181 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
24905061 CATTTGGGGA
*
24905071 TAAAATGGTAA-TTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGTTCGAGAG
1 TAAAATGGTAATTTTTGGAAAAATCAAGATCAAAAATGGAATTTTTGGAAGTTCGAGAG
* *
24905129 TAAAATGGTAATTTTTGGAAAAGTCGAGATCAAAAATGGAATTTTTGGAAGTT
1 TAAAATGGTAATTTTTGGAAAAATCAAGATCAAAAATGGAATTTTTGGAAGTT
24905182 TTCGGGTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 11 0.22
59 38 0.78
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.32
Consensus pattern (59 bp):
TAAAATGGTAATTTTTGGAAAAATCAAGATCAAAAATGGAATTTTTGGAAGTTCGAGAG
Found at i:24905209 original size:30 final size:29
Alignment explanation
Indices: 24905101--24905360 Score: 173
Period size: 30 Copynumber: 8.8 Consensus size: 29
24905091 AATCAAGGTC
24905101 AAAAATGGAATTTTTGGAAG--TTCGAGAGT
1 AAAAATGGAATTTTTGGAAGTTTTCG-G-GT
*** *
24905130 -AAAATGGTAATTTTTGGAA-AAGTCGAGAT
1 AAAAATGG-AATTTTTGGAAGTTTTCG-GGT
24905159 CAAAAATGGAATTTTTGGAAGTTTTCGGGT
1 -AAAAATGGAATTTTTGGAAGTTTTCGGGT
*
24905189 AAAAAATGGAATTTTTGGAAGTTTTAGGGT
1 -AAAAATGGAATTTTTGGAAGTTTTCGGGT
** *
24905219 -AAAATGGTAATTTTTAAAAGTTTTGGGGTT
1 AAAAATGG-AATTTTTGGAAGTTTTCGGG-T
* *
24905249 AAAAATGGAAATTTTGAAAG--TTC-GGT
1 AAAAATGGAATTTTTGGAAGTTTTCGGGT
*
24905275 AGTAAAATGGTAATTTTTAGAAG-TTTCGAGGT
1 A--AAAATGG-AATTTTTGGAAGTTTTCG-GGT
*
24905307 CAAAAATGGAA-TTTTGGAAAGTTTAT-AGGT
1 -AAAAATGGAATTTTTGG-AAGTTT-TCGGGT
* *
24905337 AAAAATGTAAATTTTGGATAGTTT
1 AAAAATGGAATTTTTGGA-AGTTT
24905361 AGGGACCTTT
Statistics
Matches: 190, Mismatches: 20, Indels: 41
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.01
27 2 0.01
28 23 0.12
29 53 0.28
30 79 0.42
31 26 0.14
32 4 0.02
33 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (29 bp):
AAAAATGGAATTTTTGGAAGTTTTCGGGT
Found at i:24905231 original size:59 final size:58
Alignment explanation
Indices: 24905161--24905340 Score: 199
Period size: 59 Copynumber: 3.1 Consensus size: 58
24905151 GTCGAGATCA
*
24905161 AAAATGG-AATTTTTGGAAGTTTTCGGGTAAAAAATGGAATTTTTGGAAGTTTTAGGGT
1 AAAATGGTAATTTTTAGAAGTTTTCGGGTAAAAAATGGAA-TTTTGGAAGTTTTAGGGT
* * * * *
24905219 AAAATGGTAATTTTTAAAAGTTTTGGGGTTAAAAATGGAAATTTTGAAAG--TTCGGTAGT
1 AAAATGGTAATTTTTAGAAGTTTTCGGGTAAAAAATGG-AATTTTGGAAGTTTTAGG--GT
*
24905278 AAAATGGTAATTTTTAGAAG-TTTCGAGGTCAAAAATGGAATTTTGGAAAGTTTATA-GGT
1 AAAATGGTAATTTTTAGAAGTTTTCG-GGTAAAAAATGGAATTTTGG-AAGTTT-TAGGGT
24905337 AAAA
1 AAAA
24905341 ATGTAAATTT
Statistics
Matches: 102, Mismatches: 11, Indels: 17
0.78 0.08 0.13
Matches are distributed among these distances:
57 4 0.04
58 18 0.18
59 75 0.74
60 2 0.02
61 2 0.02
62 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.36
Consensus pattern (58 bp):
AAAATGGTAATTTTTAGAAGTTTTCGGGTAAAAAATGGAATTTTGGAAGTTTTAGGGT
Found at i:24905253 original size:89 final size:86
Alignment explanation
Indices: 24905101--24905326 Score: 226
Period size: 89 Copynumber: 2.6 Consensus size: 86
24905091 AATCAAGGTC
*
24905101 AAAAATGGAATTTTTGGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAAAGTCGAGATCAAAAAT
1 AAAAATGGAATTTTTGGAAGTTTGAGAGTAAAATGGTAATTTTT-GAAAAGTCGAGATCAAAAAT
* *
24905166 GGAATTTTTGGAAGTTTTCGGGTA-
65 GGAAATTTTGAAAG--TTC-GGTAG
* * * * * *
24905190 AAAAATGGAATTTTTGGAAGTTTTAGGGTAAAATGGTAATTTTT-AAAAGTTTTGGGGTTAAAAA
1 AAAAATGGAATTTTTGGAAGTTTGAGAGTAAAATGGTAATTTTTGAAAAG--TCGAGATCAAAAA
24905254 TGGAAATTTTGAAAGTTCGGTAG
64 TGGAAATTTTGAAAGTTCGGTAG
* * *
24905277 TAAAATGGTAATTTTTAGAAGTTTCGAG-GTCAAAAATGG-AATTTTGGAAA
1 AAAAATGG-AATTTTTGGAAGTTT-GAGAGT--AAAATGGTAATTTTTGAAA
24905327 GTTTATAGGT
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
86 4 0.03
87 15 0.13
88 16 0.14
89 71 0.61
90 10 0.09
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.35
Consensus pattern (86 bp):
AAAAATGGAATTTTTGGAAGTTTGAGAGTAAAATGGTAATTTTTGAAAAGTCGAGATCAAAAATG
GAAATTTTGAAAGTTCGGTAG
Found at i:24907863 original size:39 final size:38
Alignment explanation
Indices: 24907783--24908199 Score: 230
Period size: 39 Copynumber: 10.7 Consensus size: 38
24907773 GGATAACTAC
* * ****
24907783 AATCTGCCCCAGGCTCGGGGTAGGAGATTGGTTGATGGT
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGAT-GT
* *
24907822 AATCTGCCTCAAGCTCAGGGTAAGAGATCAAATGACTGT
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGA-TGT
* * * ****
24907861 AATTTACCCCTAGCTCGGGGTAAGAGATTGGTTGATGAT
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGATG-T
* * * * *
24907900 GATCTACCCCAAACTCGGGGTAAAAGATCAAATGGTTGT
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAAT-GATGT
* * **
24907939 AATCTGCCCCATGCTCGGGGTAAGAGATTAGTTGATGAT
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGATG-T
* * * * *
24907978 GATTTGCCCCAAGCTCGAGGTAAAAGATCAAATGGCT-T
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAAT-GATGT
* ****
24908016 CAATTTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGAT
1 -AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGATG-T
* * * * *
24908056 GATCTGCCCCAAGCTCAGGGTAAAAGATAAAATGGCT-T
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAAT-GATGT
** * ****
24908094 CAATCTGCCTTAGGCTCGGGGTAAGAGATTGGTTGATGAT
1 -AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGATG-T
* * *
24908134 GATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCT-T
1 AATCTGCCCCAAGCTCGGGGTAAGAGATCAAAT-GATGT
* *
24908172 CAATCTACCCCAAGCTC-TGGTAAGAGAT
1 -AATCTGCCCCAAGCTCGGGGTAAGAGAT
24908200 TGGTTGATGA
Statistics
Matches: 277, Mismatches: 87, Indels: 29
0.70 0.22 0.07
Matches are distributed among these distances:
38 21 0.08
39 244 0.88
40 12 0.04
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (38 bp):
AATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGATGT
Found at i:24907928 original size:78 final size:78
Alignment explanation
Indices: 24907782--24908210 Score: 567
Period size: 78 Copynumber: 5.5 Consensus size: 78
24907772 TGGATAACTA
* * * * * * * *
24907782 CAATCTGCCCCAGGCTCGGGGTAGGAGATTGGTTGATGGTAATCTGCCTCAAGCTCAGGGTAAGA
1 CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
*
24907847 GATCAAATGACTGT
66 GATCAAATGGCT-T
* * * *
24907861 -AATTTACCCCTAGCTCGGGGTAAGAGATTGGTTGATGATGATCTACCCCAAACTCGGGGTAAAA
1 CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
24907925 GATCAAATGG-TT
66 GATCAAATGGCTT
* * * * * *
24907937 GTAATCTGCCCCATGCTCGGGGTAAGAGATTAGTTGATGATGATTTGCCCCAAGCTCGAGGTAAA
1 -CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAA
24908002 AGATCAAATGGCTT
65 AGATCAAATGGCTT
* * *
24908016 CAATTTGCCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCAGGGTAAAA
1 CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
*
24908081 GATAAAATGGCTT
66 GATCAAATGGCTT
* ** *
24908094 CAATCTGCCTTAGGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
1 CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
24908159 GATCAAATGGCTT
66 GATCAAATGGCTT
*
24908172 CAATCTACCCCAAGCTC-TGGTAAGAGATTGGTTGATGAT
1 CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGAT
24908211 ATAACTTCAC
Statistics
Matches: 306, Mismatches: 41, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
76 1 0.00
77 22 0.07
78 281 0.92
79 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (78 bp):
CAATCTACCCCAAGCTCGGGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAAA
GATCAAATGGCTT
Found at i:24908379 original size:101 final size:99
Alignment explanation
Indices: 24908258--24908460 Score: 266
Period size: 101 Copynumber: 2.0 Consensus size: 99
24908248 TGAGATCCGC
* * * *
24908258 TGCTATAGTTTTAATCCAACTTCGT-TGTAACTTC-AGAAAGATAGGATTTGATGTTGAAGCTTC
1 TGCTATAGTTTTAATCCAAC-T-GTATGCAACTTCAAG-AAGATAGGAATTGACGTTAAAGCTTC
24908321 ATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACT
63 ATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACT
* *
24908358 TGCTATTGTTTTTAATCCAACTGTACTGCAACTTCAAGAGGATAGGAATTGACGTTAAAGCTTCA
1 TGCTATAG-TTTTAATCCAACTGTA-TGCAACTTCAAGAAGATAGGAATTGACGTTAAAGCTTCA
* * *
24908423 TCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACT
64 TCTTGCTCTTACTACAACTTCAAAGAGATAAAGACT
24908459 TG
1 TG
24908461 TCATTGTAGT
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
99 2 0.02
100 8 0.09
101 78 0.87
102 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (99 bp):
TGCTATAGTTTTAATCCAACTGTATGCAACTTCAAGAAGATAGGAATTGACGTTAAAGCTTCATC
TTGCTCTTACTACAACTTCAAAGAGATAAAGACT
Found at i:24908594 original size:49 final size:49
Alignment explanation
Indices: 24908540--24908674 Score: 123
Period size: 49 Copynumber: 2.8 Consensus size: 49
24908530 CATGTTTCTA
* *
24908540 AGGTACCGAGTTTGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTTG
1 AGGTACCGAGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTCTG
* * * * * * * **
24908589 TGGTACTG-GACTCACCATTGCGGCTTAAATCTTTCCCTTTATGTCTCTG
1 AGGTACCGAG-TTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTCTG
*
24908638 AGGTA-CAAGGTTCGCC-TTGCGACTTAAACCTTTCCCT
1 AGGTACCGA-GTTCGCCATTGCGACTTAAACCTTTCCCT
24908675 CTGTGTCTTC
Statistics
Matches: 65, Mismatches: 18, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
48 20 0.31
49 44 0.68
50 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (49 bp):
AGGTACCGAGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTCTG
Found at i:24908671 original size:48 final size:49
Alignment explanation
Indices: 24908554--24908674 Score: 129
Period size: 49 Copynumber: 2.5 Consensus size: 49
24908544 ACCGAGTTTG
* * *
24908554 CCATTGCGACTTAAACCTTTCCCTTCAAATCTTTGTGGTACTGGACTCA
1 CCATTGCGACTTAAACCTTTCCCTTCAAATCTCTGAGGTACAGGACTCA
* * * ** * *
24908603 CCATTGCGGCTTAAATCTTTCCCTTTATGTCTCTGAGGTACAAGG-TTCG
1 CCATTGCGACTTAAACCTTTCCCTTCAAATCTCTGAGGTAC-AGGACTCA
24908652 CC-TTGCGACTTAAACCTTTCCCT
1 CCATTGCGACTTAAACCTTTCCCT
24908675 CTGTGTCTTC
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
48 19 0.32
49 38 0.64
50 2 0.03
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.36
Consensus pattern (49 bp):
CCATTGCGACTTAAACCTTTCCCTTCAAATCTCTGAGGTACAGGACTCA
Found at i:24908710 original size:97 final size:97
Alignment explanation
Indices: 24908553--24908981 Score: 392
Period size: 97 Copynumber: 4.4 Consensus size: 97
24908543 TACCGAGTTT
** * * * * *
24908553 GCCATTGCGACTTAAACCTTTCCCTTCAAATCTTTGTGGTACTGGA-CTCACCATTGCGGCTTAA
1 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATC-CGCCGTTACGGCTTAG
* * *
24908617 ATCTTTCCCTTTATGTCTCTGAGGTACAAGGTTC
65 ATCTTTCCCTTCATGTCTCTGCGGTAC-TGGTTC
*
24908651 GCC-TTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAG
1 GCCATTGCGACTTAAACCTTTCCCTTC-ATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAG
* ** *
24908714 ATCCTTCCCTTCAAATCT-TCGCGGTACTGGATCC
65 ATCTTTCCCTTCATGTCTCT-GCGGTACTGG-TTC
* * * * *
24908748 GCCGTTGC-AGCTTAAATCTTTCCTTTCATGTCTTCGAGGTACTGGATCCTCCGTTACGGCTTAG
1 GCCATTGCGA-CTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAG
*
24908812 ATCTTTCCCTTCATGTCTAC-GCGATACTGGTTCC
65 ATCTTTCCCTTCATGTCT-CTGCGGTACTGGTT-C
* * * *
24908846 ACCATTAG-G-CTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAG
1 GCCATT-GCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAG
* * *
24908909 ATCTTTCCCTTCATGTCT-TCGCAGTACTCGATC
65 ATCTTTCCCTTCATGTCTCT-GCGGTACTGGTTC
* * * * *
24908942 TGCCGTTGCGGCTTAGATCTTTCCCTT-ATGTCTTCATGGT
1 -GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGT
24908982 TTTTCTCAGC
Statistics
Matches: 275, Mismatches: 39, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
96 7 0.03
97 166 0.60
98 99 0.36
99 3 0.01
ACGTcount: A:0.16, C:0.29, G:0.20, T:0.36
Consensus pattern (97 bp):
GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGA
TCTTTCCCTTCATGTCTCTGCGGTACTGGTTC
Found at i:24908733 original size:49 final size:49
Alignment explanation
Indices: 24908678--24908976 Score: 395
Period size: 49 Copynumber: 6.1 Consensus size: 49
24908668 TTTCCCTCTG
* *
24908678 TGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGATCCTTCCCTTCA
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
** * * * *
24908727 AATCTTCGCGGTACTGGATCCGCCGTTGCAGCTTAAATCTTTCCTTTCA
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
* *
24908776 TGTCTTCGAGGTACTGGATCCTCCGTTACGGCTTAGATCTTTCCCTTCA
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
* * * * *
24908825 TGTCTACGCGATACTGGTTCCACCATTA-GGCTTAGATCTTTCCCTTCA
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
* *
24908873 TGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCA
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
* * * *
24908922 TGTCTTCGCAGTACTCGATCTGCCGTTGCGGCTTAGATCTTTCCCTT-A
1 TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
24908970 TGTCTTC
1 TGTCTTC
24908977 ATGGTTTTTC
Statistics
Matches: 216, Mismatches: 33, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
48 49 0.23
49 167 0.77
ACGTcount: A:0.14, C:0.29, G:0.20, T:0.36
Consensus pattern (49 bp):
TGTCTTCGCGGTACTGGATCCGCCGTTACGGCTTAGATCTTTCCCTTCA
Found at i:24908779 original size:146 final size:146
Alignment explanation
Indices: 24908572--24908974 Score: 408
Period size: 146 Copynumber: 2.8 Consensus size: 146
24908562 ACTTAAACCT
* * *
24908572 TTCCCTTCAAATCTTTGTGGTACTGGA-CTCACCATTGCGGCTTAAATCTTTCCCTTT-ATGTC-
1 TTCCCTTCAAATCTTCGTGGTACTGGATC-CGCCGTTGCGGCTTAAATCTTT-CCTTTCATGTCT
* * * * * *
24908634 TCTGAGGTACAAGG-TTCGCC-TTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTGGA
64 TC-GAGGTAC-AGGATCCGCCGTTACGACTTAAACCTTTCCCTTC-ATGTCTACGCGATACTGGA
* *
24908696 TCCGCCGTTACGGCTTAGATCC
126 TCCACCATTA-GGCTTAGATCC
* *
24908718 TTCCCTTCAAATCTTCGCGGTACTGGATCCGCCGTTGCAGCTTAAATCTTTCCTTTCATGTCTTC
1 TTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCTTTCATGTCTTC
* * * * * *
24908783 GAGGTACTGGATCCTCCGTTACGGCTTAGATCTTTCCCTTCATGTCTACGCGATACTGGTTCCAC
66 GAGGTACAGGATCCGCCGTTACGACTTAAACCTTTCCCTTCATGTCTACGCGATACTGGATCCAC
*
24908848 CATTAGGCTTAGATCT
131 CATTAGGCTTAGATCC
** * *
24908864 TTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATGTCTTC
1 TTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCTTTCATGTCTTC
** * * * * *
24908929 GCA-GTACTCGATCTGCCGTTGCGGCTTAGATCTTTCCCTT-ATGTCT
66 G-AGGTACAGGATCCGCCGTTACGACTTAAACCTTTCCCTTCATGTCT
24908975 TCATGGTTTT
Statistics
Matches: 220, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
145 13 0.06
146 163 0.74
147 42 0.19
148 2 0.01
ACGTcount: A:0.15, C:0.29, G:0.20, T:0.36
Consensus pattern (146 bp):
TTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCTTTCATGTCTTC
GAGGTACAGGATCCGCCGTTACGACTTAAACCTTTCCCTTCATGTCTACGCGATACTGGATCCAC
CATTAGGCTTAGATCC
Found at i:24910246 original size:9 final size:8
Alignment explanation
Indices: 24910221--24910294 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
24910211 GACCTCTCCT
24910221 TTTTTTTC
1 TTTTTTTC
*
24910229 TATTTTTC
1 TTTTTTTC
24910237 TTTTTCTTC
1 TTTTT-TTC
24910246 TTGTTTTTGC
1 TT-TTTTT-C
24910256 TTTTCTTT-
1 TTTT-TTTC
*
24910264 TTTCTTTC
1 TTTTTTTC
*
24910272 TCTTCTTTC
1 T-TTTTTTC
* *
24910281 TTTATTTA
1 TTTTTTTC
24910289 TTTTTT
1 TTTTTT
24910295 CTTCATTGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
7 3 0.06
8 25 0.46
9 17 0.31
10 9 0.17
ACGTcount: A:0.04, C:0.15, G:0.03, T:0.78
Consensus pattern (8 bp):
TTTTTTTC
Found at i:24914507 original size:628 final size:623
Alignment explanation
Indices: 24913306--24914536 Score: 1294
Period size: 628 Copynumber: 2.0 Consensus size: 623
24913296 TTTGAATAAA
** *
24913306 GATGCAATGCAAATAGATTCAAAATGAACAAGTTAGCGTAATTAATACAGGAATAAAATTTGAAA
1 GATGCAATGCAAATAGATTCAAAATGAACAAGTTAGCGTAACAAATACAGGAATAAAACTTGAAA
* * *
24913371 TAAATTACAATTAAAAACAAAGAAATAAGAATGTAACCGTGTCCCTTATCTTCTTCGTGCAACCA
66 TAAATTACAACTAAAAACAAAGAAACAAGAATGTAACCGTGTCCCTTACCTTCTTCGTGCAACCA
* * * * * *
24913436 CTGAAGGCTTGGCATAATTTTACTTAAGGTAGGCTCTCAAGGAGTTAAATGCAAGTTAATAAACT
131 CTGAAGGCTTGACACAATTCTACTTAAGGTAGGCTATCAAGGAATTAAATGCAAGTTAATAAAAT
** *
24913501 GTGCAGCTTATGAATGCATGAATGCATAAGAAAGGTATTGACTTATAGCTCAATTCTATTAGAAA
196 GTGCAGCTTATGAATGCATGAATGCATAAGAAAGACATTGACTCATAGCTCAATTCTATTAGAAA
* * * ** *
24913566 AACCTTACTAGAAATCAAATTCCTTTACATAAATAGATGCGTATATGGCCGTGTTGCGGTGTTCA
261 AACCTTACTAGAAAACAAATTCCTTTACATAAACAGATACACATATGGCCGTGTT-CAGTGTTCA
* * * ** *
24913631 AAAGACAGTCTTCGTAGAAAGTCATTCAAATAGTCTTGGTTCATCTCTGACTTTCGGTCCACAAT
325 AAAGACAATCTCCGTAGAAAGTCATTCAAATAGCCCCGGTTCATCTCTGACTTTCAGTCCACAAT
* *
24913696 ATCATTTCAAAAATATTGAGTGGTCAGTCACTTCTCGTACTTAGGCCAAAACTTAGATGATTACA
390 A-CATTT--AAAATATTAAGTGATCAGTCACTTCTCGTACTTAGGCCAAAACTTAGATGATTACA
* *
24913761 CGATCTTTGTTTTCGTCTTGCTCATCTGGCAGATCATCGATTTTCGTTCTCTTTCTTTCTTTGCC
452 CGATCTTTGTTTTCATCTTACTCATCTGGCAGATCATCGATTTTCGTTCTCTTTCTTTCTTTGCC
* * * * * * * *
24913826 ATGTAAGCCCGACCATATTGTCTTCTATTTCATCAAAGTATCTATTTTCTTATGACCAGCTTTTT
517 ATATAAGCCCGACCATATTATCTTCCACTTCATCAAAGAATCGATTTTCTTATGACCA-ATTTTC
*
24913891 TATTTCGTAATTGAGCTTAGAACTATACCTCTCTTTGTATGAG
581 TATTTAGTAATTGAGCTTAGAACTATACCTCTCTTTGTATGAG
* * * * *
24913934 GATGTAATGCAAATAGATTCGAAATGAACAAGTTAGTGTAACAAATACATGAATAAAACTTGGAA
1 GATGCAATGCAAATAGATTCAAAATGAACAAGTTAGCGTAACAAATACAGGAATAAAACTTGAAA
* * * * * *
24913999 TAATTTGCAACTAAAAGCAAAGAAGCAAGAATGTAACTGTG-CCTCTTACCTTCTTTGTGCAACC
66 TAAATTACAACTAAAAACAAAGAAACAAGAATGTAACCGTGTCC-CTTACCTTCTTCGTGCAACC
* * **
24914063 ACTGAATGCTTGACACAATTCTACTTGAGGTAGGCTATCAAGGAATTATGTGCAAGTTAATAAAA
130 ACTGAAGGCTTGACACAATTCTACTTAAGGTAGGCTATCAAGGAATTAAATGCAAGTTAATAAAA
* *
24914128 TGTGCAGCTTATGAATGCATGTATGCATAAGAAA-ACATTGACTCATAGCTCAATTCTATTA-TA
195 TGTGCAGCTTATGAATGCATGAATGCATAAGAAAGACATTGACTCATAGCTCAATTCTATTAGAA
** *
24914191 AAATTTTACTAGAAAACAAATTCCTTTACATAAGACAGATACACATATGGTCGTGCCTT-AGTGT
260 AAACCTTACTAGAAAACAAATTCCTTTACATAA-ACAGATACACATATGGCCGTG--TTCAGTGT
* * * * * *
24914255 TTAAAAG-CTTTTAATCTCCGTAGGACA-TC-TTCCAATTTTGCCCCGGTTCATCCTTTGATTTT
322 TCAAAAGAC----AATCTCCGTA-GAAAGTCATT-CAA-ATAGCCCCGGTTCAT-CTCTGACTTT
* * * * * * * ** * *
24914317 CAGTCC-CAA-A-ATTT-TAA-CTTAAGTGATCGGTCACTTTTCGTAGTTGGGTCAAAGTTTGGT
379 CAGTCCACAATACATTTAAAATATTAAGTGATCAGTCACTTCTCGTACTTAGGCCAAAACTTAGA
** * * *
24914377 TCG-TTGTACGATCTTTGTTTTTATCTTACTCGA-CTGGCTA-ATCATTGGCTTTTC-TTCTTTC
444 T-GATTACACGATCTTTGTTTTCATCTTACTC-ATCTGGC-AGATCA-TCGATTTTCGTTC--TC
** * * *
24914438 TTTTCATTT-TTTGACCATATGCGCGCGACCATATTATTTTCCACCTT-ATCAAGGAACTCGA-T
503 -TTTC-TTTCTTTG-CCATATAAGCCCGACCATATTATCTTCCA-CTTCATCAAAGAA-TCGATT
24914500 TTCTTATGACCAATTTTCTATTTAGTAATTGAGCTTA
563 TTCTTATGACCAATTTTCTATTTAGTAATTGAGCTTA
24914537 AATCCACACT
Statistics
Matches: 493, Mismatches: 87, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
624 67 0.14
625 12 0.02
626 34 0.07
627 82 0.17
628 246 0.50
629 9 0.02
630 14 0.03
631 16 0.03
632 13 0.03
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (623 bp):
GATGCAATGCAAATAGATTCAAAATGAACAAGTTAGCGTAACAAATACAGGAATAAAACTTGAAA
TAAATTACAACTAAAAACAAAGAAACAAGAATGTAACCGTGTCCCTTACCTTCTTCGTGCAACCA
CTGAAGGCTTGACACAATTCTACTTAAGGTAGGCTATCAAGGAATTAAATGCAAGTTAATAAAAT
GTGCAGCTTATGAATGCATGAATGCATAAGAAAGACATTGACTCATAGCTCAATTCTATTAGAAA
AACCTTACTAGAAAACAAATTCCTTTACATAAACAGATACACATATGGCCGTGTTCAGTGTTCAA
AAGACAATCTCCGTAGAAAGTCATTCAAATAGCCCCGGTTCATCTCTGACTTTCAGTCCACAATA
CATTTAAAATATTAAGTGATCAGTCACTTCTCGTACTTAGGCCAAAACTTAGATGATTACACGAT
CTTTGTTTTCATCTTACTCATCTGGCAGATCATCGATTTTCGTTCTCTTTCTTTCTTTGCCATAT
AAGCCCGACCATATTATCTTCCACTTCATCAAAGAATCGATTTTCTTATGACCAATTTTCTATTT
AGTAATTGAGCTTAGAACTATACCTCTCTTTGTATGAG
Found at i:24916020 original size:28 final size:28
Alignment explanation
Indices: 24915997--24916050 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
24915987 ATTTTTGGTT
24915997 ACTCGAGGGCAAAATGGTAATTTTGGAC
1 ACTCGAGGGCAAAATGGTAATTTTGGAC
*
24916025 ACTCGAGGGCAAAGTGGTAATTTTGG
1 ACTCGAGGGCAAAATGGTAATTTTGG
24916051 GAAAGTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
ACTCGAGGGCAAAATGGTAATTTTGGAC
Found at i:24916124 original size:58 final size:58
Alignment explanation
Indices: 24916062--24916348 Score: 292
Period size: 59 Copynumber: 4.9 Consensus size: 58
24916052 AAAGTTTGGA
* * * * *
24916062 GTCAAAAACAGAATTTTTAGACA-TCCGGCGGTAAATTCGTAATTTTT-AAAAAATCGAG
1 GTCAAAAATAGAATTTTTAGA-AGTTCGG-GGTAAAATGGTAATTTTTGGAAAAATCGAG
* * * *
24916120 GTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGAAATTTTTGGAAAAATCAAG
1 GTCAAAAATAGAATTTTTAGAAGTTCG-GGGTAAAATGGTAATTTTTGGAAAAATCGAG
* *
24916179 GTCAAAAATAGAATTTTTTGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAAAGTCGAG
1 GTCAAAAATAGAATTTTTAGAAGTTC-GGGGTAAAATGGTAATTTTTGGAAAAATCGAG
* * * ** **
24916238 GTCAAAAATGGAATTTTTGGAAGTTCGAGAGTAAAATGGTAATTTTTGG-AAGTTTTAGG
1 GTCAAAAATAGAATTTTTAGAAGTTCG-GGGTAAAATGGTAATTTTTGGAAAAATCGA-G
* * *
24916297 GTAAAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAA
1 GT-CAAAAATAGAATTTTTAGAAGTTCG-GGGTAAAATGGTAATTTTTGGAA
24916349 CTTTCGGGGT
Statistics
Matches: 198, Mismatches: 23, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
57 1 0.01
58 41 0.21
59 109 0.55
60 46 0.23
61 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (58 bp):
GTCAAAAATAGAATTTTTAGAAGTTCGGGGTAAAATGGTAATTTTTGGAAAAATCGAG
Found at i:24916193 original size:59 final size:59
Alignment explanation
Indices: 24916091--24916348 Score: 347
Period size: 59 Copynumber: 4.4 Consensus size: 59
24916081 GACATCCGGC
* * * *
24916091 GGTAAATTCGTAATTTTT-AAAAAATCGAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
1 GGTAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
* * * *
24916149 GGTAAAATGGAAATTTTTGGAAAAATCAAGGTCAAAAATAGAATTTTTTGAAGTTCGGG
1 GGTAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
* *
24916208 GGTAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
1 GGTAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
* *** * * *
24916267 AGTAAAATGGTAATTTTTGGAAGTTTTAGGGTAAAAAAATGGAATTTTTGGAAGTTCGAG
1 GGTAAAATGGTAATTTTTGGAAAAATCAAGGT-CAAAAATGGAATTTTTGGAAGTTCGAG
24916327 GGTAAAATGGTAATTTTTGGAA
1 GGTAAAATGGTAATTTTTGGAA
24916349 CTTTCGGGGT
Statistics
Matches: 175, Mismatches: 23, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
58 15 0.09
59 113 0.65
60 47 0.27
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.33
Consensus pattern (59 bp):
GGTAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGTTCGAG
Found at i:24916316 original size:31 final size:29
Alignment explanation
Indices: 24916124--24916410 Score: 229
Period size: 29 Copynumber: 9.8 Consensus size: 29
24916114 ATCGAGGTCA
24916124 AAAATGG-AATTTTTGGAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGAAGTTCGAGGGT
* ** *
24916152 AAAATGGAAATTTTTGGAAAAATC-AAGGT
1 AAAATGGTAATTTTTGG-AAGTTCGAGGGT
* * *
24916181 CAAAAATAG-AATTTTTTGAAGTTCGGGGGT
1 --AAAATGGTAATTTTTGGAAGTTCGAGGGT
24916211 AAAATGGTAATTTTTGGAAAAG-TCGA-GGT
1 AAAATGGTAATTTTTGG--AAGTTCGAGGGT
*
24916240 CAAAAATGG-AATTTTTGGAAGTTCGAGAGT
1 --AAAATGGTAATTTTTGGAAGTTCGAGGGT
**
24916270 AAAATGGTAATTTTTGGAAGTTTTAGGGT
1 AAAATGGTAATTTTTGGAAGTTCGAGGGT
24916299 AAAAAAATGG-AATTTTTGGAAGTTCGAGGGT
1 ---AAAATGGTAATTTTTGGAAGTTCGAGGGT
*
24916330 AAAATGGTAATTTTTGGAACTTTCG-GGGT
1 AAAATGGTAATTTTTGGAA-GTTCGAGGGT
*
24916359 CAAAAT-G-AAATTTTGGAAAGTTC-ATGGGT
1 -AAAATGGTAATTTTTGG-AAGTTCGA-GGGT
*
24916388 AAAAAT-GTAAATTTTGGATAGTT
1 -AAAATGGTAATTTTTGGA-AGTT
24916411 TAGGGACCTT
Statistics
Matches: 213, Mismatches: 22, Indels: 46
0.76 0.08 0.16
Matches are distributed among these distances:
28 41 0.19
29 79 0.37
30 51 0.24
31 35 0.16
32 7 0.03
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGAAGTTCGAGGGT
Found at i:24916326 original size:60 final size:57
Alignment explanation
Indices: 24916118--24916410 Score: 308
Period size: 59 Copynumber: 5.0 Consensus size: 57
24916108 TAAAAAATCG
* **
24916118 AGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGAAATTTTTGGAAAAATC
1 AGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGG-AAGTTC
* * *
24916176 AAGGTCAAAAATAGAATTTTTTGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAAAG-TC
1 -AGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGG--AAGTTC
* *
24916235 GAGGTCAAAAATGGAATTTTTGGAAGTTCGAGAGTAAAATGGTAATTTTTGGAAGTTTT
1 -AGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAG-TTC
* *
24916294 AGGGTAAAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAACTTTC
1 A-GGT-CAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAA-GTTC
* * *
24916354 GGGGTC-AAAAT-GAAATTTTGGAAAGTTC-ATGGGTAAAAAT-GTAAATTTTGGATAGTT
1 -AGGTCAAAAATGGAATTTTTGG-AAGTTCGA-GGGT-AAAATGGTAATTTTTGGA-AGTT
24916411 TAGGGACCTT
Statistics
Matches: 203, Mismatches: 20, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
57 13 0.06
58 29 0.14
59 106 0.52
60 55 0.27
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (57 bp):
AGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAGTTC
Found at i:24916364 original size:118 final size:117
Alignment explanation
Indices: 24916027--24916415 Score: 380
Period size: 118 Copynumber: 3.3 Consensus size: 117
24916017 TTTTGGACAC
* * * * * * *
24916027 TCGAGGGCAAAGTGGTAATTTTGGGAAAGTTT-GGAGTCAAAAACAGAATTTTTAGACA-TCCG-
1 TCGAGGGTAAAATGGTAATTTTTGG-AAGTTTAGG-GTAAAAAATAGAATTTTTGGA-AGTTCGA
* * * *
24916089 GCGGTAAATTCGTAATTTTT-AAAAAATCGAGGTCAAAAATGGAATTTTTGGAAGT
63 G-GGTAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGGAAGT
* ** * * * * *
24916144 TCGAGGGTAAAATGGAAATTTTTGGAAAAATCAAGGTCAAAAATAGAATTTTTTGAAGTTCGGGG
1 TCGAGGGTAAAATGGTAATTTTTGG-AAGTTTAGGGTAAAAAATAGAATTTTTGGAAGTTCGAGG
24916209 GTAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGGAAGT
65 GTAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGGAAGT
* *
24916262 TCGAGAGTAAAATGGTAATTTTTGGAAGTTTTAGGGTAAAAAAATGGAATTTTTGGAAGTTCGAG
1 TCGAGGGTAAAATGGTAATTTTTGGAAG-TTTAGGGT-AAAAAATAGAATTTTTGGAAGTTCGAG
*** * *
24916327 GGTAAAATGGTAATTTTTGGAACTTTCGGGGTC-AAAAT-GAAATTTTGGAAAGT
64 GGTAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGG-AAGT
*
24916380 TC-ATGGGTAAAAAT-GTAAATTTTGGATAGTTTAGGG
1 TCGA-GGGT-AAAATGGTAATTTTTGGA-AGTTTAGGG
24916416 ACCTTCAGGG
Statistics
Matches: 230, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
116 1 0.00
117 75 0.33
118 95 0.41
119 59 0.26
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (117 bp):
TCGAGGGTAAAATGGTAATTTTTGGAAGTTTAGGGTAAAAAATAGAATTTTTGGAAGTTCGAGGG
TAAAATGGTAATTTTTGGAAAAGTCGAGGTCAAAAATGGAATTTTTGGAAGT
Found at i:24918410 original size:30 final size:29
Alignment explanation
Indices: 24918366--24918436 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
24918356 ATTATTCAAA
** *
24918366 TAAATTTAAATTTAAATTTATGATAAAGT
1 TAAATTTAAATTTAAATTTAAAATAAACT
*
24918395 TAAATTTCCAATTTAAATTTAAAATAAACT
1 TAAATTT-AAATTTAAATTTAAAATAAACT
*
24918425 TAAATTCAAATT
1 TAAATTTAAATT
24918437 CTGTTGGGCC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 11 0.31
30 24 0.69
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (29 bp):
TAAATTTAAATTTAAATTTAAAATAAACT
Found at i:24923291 original size:29 final size:30
Alignment explanation
Indices: 24923251--24923308 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
24923241 TTGGTTAAAC
*
24923251 GTGTAATGTTATATATGA-ATTTTAATTTT
1 GTGTAATGTTATACATGATATTTTAATTTT
*
24923280 GTGTAATTTTATACATGATATTTTAATTT
1 GTGTAATGTTATACATGATATTTTAATTT
24923309 GATTCAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.55
Consensus pattern (30 bp):
GTGTAATGTTATACATGATATTTTAATTTT
Found at i:24923535 original size:29 final size:31
Alignment explanation
Indices: 24923482--24923560 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 31
24923472 ATTTAAATCA
*
24923482 AAATCAAAATTTAATATATATAATTATAC-C
1 AAATCAAAGTTTAATATATATAATTATACAC
*
24923512 AAATCAAAGTTT-ATATATCA-AATTATACATT
1 AAATCAAAGTTTAATATAT-ATAATTATACA-C
24923543 AAATCAAAGTTTTAATAT
1 AAATCAAAG-TTTAATAT
24923561 TTATCCATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 14 0.33
30 12 0.29
31 9 0.21
32 3 0.07
33 4 0.10
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.38
Consensus pattern (31 bp):
AAATCAAAGTTTAATATATATAATTATACAC
Found at i:24923695 original size:92 final size:92
Alignment explanation
Indices: 24923538--24923723 Score: 372
Period size: 92 Copynumber: 2.0 Consensus size: 92
24923528 ATCAAATTAT
24923538 ACATTAAATCAAAGTTTTAATATTTATCCATATAAAATGCTAGCAAGATGTAGTGAAAACTTAAG
1 ACATTAAATCAAAGTTTTAATATTTATCCATATAAAATGCTAGCAAGATGTAGTGAAAACTTAAG
24923603 TAGTTACCGTATCCTCTACTAGTTAGC
66 TAGTTACCGTATCCTCTACTAGTTAGC
24923630 ACATTAAATCAAAGTTTTAATATTTATCCATATAAAATGCTAGCAAGATGTAGTGAAAACTTAAG
1 ACATTAAATCAAAGTTTTAATATTTATCCATATAAAATGCTAGCAAGATGTAGTGAAAACTTAAG
24923695 TAGTTACCGTATCCTCTACTAGTTAGC
66 TAGTTACCGTATCCTCTACTAGTTAGC
24923722 AC
1 AC
24923724 GTTTTCCTCT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (92 bp):
ACATTAAATCAAAGTTTTAATATTTATCCATATAAAATGCTAGCAAGATGTAGTGAAAACTTAAG
TAGTTACCGTATCCTCTACTAGTTAGC
Found at i:24923733 original size:22 final size:22
Alignment explanation
Indices: 24923706--24923747 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24923696 AGTTACCGTA
24923706 TCCTCTACTAGTTAGCACGTTT
1 TCCTCTACTAGTTAGCACGTTT
**
24923728 TCCTCTACTTTTTAGCACGT
1 TCCTCTACTAGTTAGCACGT
24923748 CTCTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.43
Consensus pattern (22 bp):
TCCTCTACTAGTTAGCACGTTT
Found at i:24923829 original size:3 final size:3
Alignment explanation
Indices: 24923752--24923810 Score: 75
Period size: 3 Copynumber: 19.3 Consensus size: 3
24923742 GCACGTCTCT
* *
24923752 TTC TTT TTC TT- TTCC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
24923797 TTC TTC TTTC TTC T
1 TTC TTC -TTC TTC T
24923811 CTGATAGTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 2 0.04
3 42 0.86
4 5 0.10
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:24931672 original size:25 final size:26
Alignment explanation
Indices: 24931622--24931674 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
24931612 CATTTACTTG
*
24931622 TTAAATTACATTTATTTTAATGTTAT
1 TTAAATTAAATTTATTTTAATGTTAT
24931648 TTAAATATAAATTT-TTTTAAT-TTAT
1 TTAAAT-TAAATTTATTTTAATGTTAT
24931673 TT
1 TT
24931675 TCAATTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 6 0.24
26 13 0.52
27 6 0.24
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
TTAAATTAAATTTATTTTAATGTTAT
Found at i:24934580 original size:25 final size:25
Alignment explanation
Indices: 24934546--24934595 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24934536 ACAAGTCATC
24934546 TAACTATACACTTGATTTTATTTTA
1 TAACTATACACTTGATTTTATTTTA
24934571 TAACTATACACTTGATTTTATTTTA
1 TAACTATACACTTGATTTTATTTTA
24934596 GTTATTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.52
Consensus pattern (25 bp):
TAACTATACACTTGATTTTATTTTA
Found at i:24935097 original size:31 final size:31
Alignment explanation
Indices: 24935061--24935124 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
24935051 AAATTGTCAC
* **
24935061 TAAACTATTCGAAAGTTTTTATTTTAATTAT
1 TAAACTATTCAAAAGTTTTTATTCAAATTAT
24935092 TAAACTATTCAAAAGTTTTTATTCAAATTAT
1 TAAACTATTCAAAAGTTTTTATTCAAATTAT
24935123 TA
1 TA
24935125 GGCTGTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (31 bp):
TAAACTATTCAAAAGTTTTTATTCAAATTAT
Found at i:24935422 original size:22 final size:22
Alignment explanation
Indices: 24935396--24935437 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
24935386 AAGCTTAGAT
24935396 TTTAAAATTAGGTTTAAATTGA
1 TTTAAAATTAGGTTTAAATTGA
* **
24935418 TTTAAATTTATTTTTAAATT
1 TTTAAAATTAGGTTTAAATT
24935438 TAAATTTAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
TTTAAAATTAGGTTTAAATTGA
Found at i:24935466 original size:16 final size:15
Alignment explanation
Indices: 24935408--24935467 Score: 63
Period size: 16 Copynumber: 4.0 Consensus size: 15
24935398 TAAAATTAGG
24935408 TTTAAATTGATTTAAA
1 TTTAAATT-ATTTAAA
24935424 TTT--ATT-TTTAAA
1 TTTAAATTATTTAAA
*
24935436 TTTAAATTTAGTTAAA
1 TTTAAA-TTATTTAAA
24935452 TTTAAATTAATTTAAA
1 TTTAAATT-ATTTAAA
24935468 ACTTAATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 9 0.24
14 4 0.11
15 4 0.11
16 20 0.54
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTAAATTATTTAAA
Found at i:24941336 original size:65 final size:65
Alignment explanation
Indices: 24941232--24941361 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
24941222 TTTACATCCC
24941232 CGACCATGCAACTCACTCAAGTCTAAAGGTCAAATAAGAATCAAGTTGTTGAAATTGGATAAGAT
1 CGACCATGCAACTCACTCAAGTCTAAAGGTCAAATAAGAATCAAGTTGTTGAAATTGGATAAGAT
24941297 CGACCATGCAACTCACTCAAGTCTAAAGGTCAAATAAGAATCAAGTTGTTGAAATTGGATAAGAT
1 CGACCATGCAACTCACTCAAGTCTAAAGGTCAAATAAGAATCAAGTTGTTGAAATTGGATAAGAT
24941362 GGATTGGCTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (65 bp):
CGACCATGCAACTCACTCAAGTCTAAAGGTCAAATAAGAATCAAGTTGTTGAAATTGGATAAGAT
Found at i:24943817 original size:171 final size:174
Alignment explanation
Indices: 24943479--24943822 Score: 491
Period size: 172 Copynumber: 2.0 Consensus size: 174
24943469 TAGCAAAACA
* * *
24943479 ACATCAAAATAGTAGTAAACAATAGCAAAGAAAAAAAATTAGACAGATTCGAGTCAGGTCGAGCT
1 ACATCAAAATAGTAGTAAACAATAGCAAAGAAAAAAAATTAGACAAATTCGAGCCAAGTCGAGCT
* * * * * * *
24943544 GGGCTTAAGCAAAAAAATCTTACTTGAAGTCTGACCTGTTTAAAAAATAGATCTTATTTTTTATA
66 AGGCTCAAGCAAAAAAATATTACTTAAAATCCGACCTGTTTAAAAAATAAATCTTATTTTTTATA
*
24943609 ATAATTTATTTTTTGAGCTTATATTTTTACTCAAATCATTTCAC
131 ATAATTTATTTTTTAAGCTTATATTTTTACTCAAATCATTTCAC
*
24943653 ACATCAAAATAGTAGTCAACAATAGC-AA-AAAAAAAATTAGACAAATTCGAGCCAAGTCGAGCT
1 ACATCAAAATAGTAGTAAACAATAGCAAAGAAAAAAAATTAGACAAATTCGAGCCAAGTCGAGCT
* *
24943716 AGGCTCAAGCAAAAAAATATTACTTAAAATCCGATCTGTTTAATAAATAAA-CTT-TATTTTTAT
66 AGGCTCAAGCAAAAAAATATTACTTAAAATCCGACCTGTTTAAAAAATAAATCTTAT-TTTTTAT
* *
24943779 CGA-AATTTATTTTTTAAGTTTATATTTTTACTCAAATCATTTCA
130 -AATAATTTATTTTTTAAGCTTATATTTTTACTCAAATCATTTCA
24943823 ATTTTCAAAC
Statistics
Matches: 152, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
170 1 0.01
171 49 0.32
172 75 0.49
173 2 0.01
174 25 0.16
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (174 bp):
ACATCAAAATAGTAGTAAACAATAGCAAAGAAAAAAAATTAGACAAATTCGAGCCAAGTCGAGCT
AGGCTCAAGCAAAAAAATATTACTTAAAATCCGACCTGTTTAAAAAATAAATCTTATTTTTTATA
ATAATTTATTTTTTAAGCTTATATTTTTACTCAAATCATTTCAC
Found at i:24944710 original size:14 final size:14
Alignment explanation
Indices: 24944672--24944710 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
24944662 ATTTTACAAT
*
24944672 TTTTGTCATAATTT
1 TTTTGTCATAATTA
* *
24944686 TTTTTTAATAATTA
1 TTTTGTCATAATTA
24944700 TTTTGTCATAA
1 TTTTGTCATAA
24944711 GTTAATCGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (14 bp):
TTTTGTCATAATTA
Found at i:24948632 original size:125 final size:125
Alignment explanation
Indices: 24948419--24948794 Score: 470
Period size: 125 Copynumber: 3.0 Consensus size: 125
24948409 AGGATAGGTG
* ** *
24948419 TATGTACACAATTGAACCTTGTGTGGAAATCTTGTTGTAGTTTATGTAGAACTTCTAATGTTGAT
1 TATGTAAACAATTGAACCTTGTGTGGAAATCTTGTTGTAGTTTATACAGAACTTGTAATGTTGAT
* * *
24948484 CGATAGTAATGATCTACTATGTTACTTGGACCAGGACTCAGGTGTATGTGTGGATACAAA
66 AGATAGTAATGTTCTACTATGTTACTTGGACTAGGACTCAGGTGTATGTGTGGATACAAA
* * * *
24948544 TATGTAAACAATTGAACCTTGTGTTGAACTCTTGTTGTATTTTATACAGAACTGGTAATGTTGAT
1 TATGTAAACAATTGAACCTTGTGTGGAAATCTTGTTGTAGTTTATACAGAACTTGTAATGTTGAT
* * * * * *
24948609 AGATACTAATGTTCTACTATGTTACATGAACTAGGACAC-GAGTGTATGTGTGGATACTAG
66 AGATAGTAATGTTCTACTATGTTACTTGGACTAGGACTCAG-GTGTATGTGTGGATACAAA
* * * *
24948669 TATGTAAACAATTGAACCTTGTCTGGAATTCTTGTTGTAGTTTGTACAGAACTTGTAATGTTAAT
1 TATGTAAACAATTGAACCTTGTGTGGAAATCTTGTTGTAGTTTATACAGAACTTGTAATGTTGAT
* *
24948734 AGATAGTAGTAT-TACTCTACTATCTTACTTGGACTAGGACTCCA-GTGTATGTGTGAATACA
66 AGATAGTA--ATGT--TCTACTATGTTACTTGGACTAGGACT-CAGGTGTATGTGTGGATACA
24948795 GAGTACATGT
Statistics
Matches: 213, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
124 1 0.00
125 171 0.80
126 1 0.00
127 2 0.01
128 37 0.17
129 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.37
Consensus pattern (125 bp):
TATGTAAACAATTGAACCTTGTGTGGAAATCTTGTTGTAGTTTATACAGAACTTGTAATGTTGAT
AGATAGTAATGTTCTACTATGTTACTTGGACTAGGACTCAGGTGTATGTGTGGATACAAA
Found at i:24950094 original size:25 final size:25
Alignment explanation
Indices: 24950040--24950094 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
24950030 TTTATCTTTC
* * *
24950040 ATATTGAATATACAAATAATTTTAT
1 ATATTCAATATAAAAATAATTTGAT
* *
24950065 TTATTCAATATAAAAATACTTTGAT
1 ATATTCAATATAAAAATAATTTGAT
24950090 ATATT
1 ATATT
24950095 TATTTTTTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.45
Consensus pattern (25 bp):
ATATTCAATATAAAAATAATTTGAT
Found at i:24952676 original size:2 final size:2
Alignment explanation
Indices: 24952671--24952699 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24952661 TGTTTTGGTT
24952671 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
24952700 TACAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:24961381 original size:31 final size:31
Alignment explanation
Indices: 24961346--24961406 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
24961336 CTTATATTTG
* *
24961346 GTTTCAATGTTTAATTTGATATTTGAGTTTA
1 GTTTCAATGTTCAATTTGATACTTGAGTTTA
* *
24961377 GTTTCAATGTTCAGTTTGGTACTTGAGTTT
1 GTTTCAATGTTCAATTTGATACTTGAGTTT
24961407 TTTCAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.21, C:0.07, G:0.20, T:0.52
Consensus pattern (31 bp):
GTTTCAATGTTCAATTTGATACTTGAGTTTA
Found at i:24963318 original size:7 final size:7
Alignment explanation
Indices: 24963308--24963342 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
24963298 GAGAAAATTA
24963308 AAAATAT
1 AAAATAT
24963315 AAAATAT
1 AAAATAT
24963322 AAAATAT
1 AAAATAT
24963329 AAAATAT
1 AAAATAT
24963336 AAAATAT
1 AAAATAT
24963343 TTTTAGGGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATAT
Found at i:24969109 original size:15 final size:14
Alignment explanation
Indices: 24969089--24969120 Score: 55
Period size: 14 Copynumber: 2.2 Consensus size: 14
24969079 AGAAATAGAA
24969089 TAAATTAATTTAAAT
1 TAAATTAA-TTAAAT
24969104 TAAATTAATTAAAT
1 TAAATTAATTAAAT
24969118 TAA
1 TAA
24969121 CTAATTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATTAATTAAAT
Found at i:24971480 original size:31 final size:31
Alignment explanation
Indices: 24971443--24971502 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
24971433 GATAAGCATT
* *
24971443 GATGCAATCGAGTTGGCTTGAGTAGCCTTGA
1 GATGCAATCGAATTGGCTTGAGAAGCCTTGA
24971474 GATGCAATCGAATTGGCTTGAGAAGCCTT
1 GATGCAATCGAATTGGCTTGAGAAGCCTT
24971503 TTGGCAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (31 bp):
GATGCAATCGAATTGGCTTGAGAAGCCTTGA
Found at i:24988441 original size:27 final size:27
Alignment explanation
Indices: 24988361--24988441 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
24988351 GTACAAGGGG
* * *
24988361 TGGTGCCTACCTGACAGGCGGCACTAG
1 TGGTGCCTACCTGTCAGGCGGCACCAA
24988388 TGGTGCCTACCTGTCAGGCGGCACCAA
1 TGGTGCCTACCTGTCAGGCGGCACCAA
*
24988415 TGGTGCCTTCCTGTCAGGCGGCACCAA
1 TGGTGCCTACCTGTCAGGCGGCACCAA
24988442 CCCGTATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (27 bp):
TGGTGCCTACCTGTCAGGCGGCACCAA
Found at i:24989676 original size:29 final size:28
Alignment explanation
Indices: 24989621--24989677 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
24989611 ATTTTTTTAA
**
24989621 TTTTATATTATTATTTTAGTATTAAATT
1 TTTTATATTATTATTTTAGTAAAAAATT
24989649 TTTTATATATATTATTATT-GTAAAAAATT
1 TTTTATAT-TATTATT-TTAGTAAAAAATT
24989678 CCCATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 8 0.32
29 15 0.60
30 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (28 bp):
TTTTATATTATTATTTTAGTAAAAAATT
Found at i:24989776 original size:15 final size:15
Alignment explanation
Indices: 24989743--24989781 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
24989733 ATATATTTTT
*
24989743 AAATTAAA-AAAAGA
1 AAATTAAATTAAAGA
*
24989757 AAATTAAATTAAATA
1 AAATTAAATTAAAGA
24989772 AAATTAAATT
1 AAATTAAATT
24989782 TTGACAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
AAATTAAATTAAAGA
Found at i:24989940 original size:22 final size:22
Alignment explanation
Indices: 24989927--24989981 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
24989917 TATTTTAATC
24989927 TTAAATTTACTTTAAATTCAAT
1 TTAAATTTACTTTAAATTCAAT
* * *
24989949 TTAAATTTAAATTTGAATTTAAT
1 TTAAATTT-ACTTTAAATTCAAT
24989972 TTAAAATTTA
1 TT-AAATTTA
24989982 ATATTATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.29
23 14 0.50
24 6 0.21
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAATTTACTTTAAATTCAAT
Found at i:24989957 original size:6 final size:6
Alignment explanation
Indices: 24989910--24989982 Score: 57
Period size: 6 Copynumber: 12.7 Consensus size: 6
24989900 CATTTGAAAA
* * *
24989910 TTAAAT TT--AT TTTAAT CTTAAAT TT-ACT TTAAA- TTCAAT TTAAAT
1 TTAAAT TTAAAT TTAAAT -TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
24989955 TTAAAT TTGAAT TT-AAT TTAAAAT TTAA
1 TTAAAT TTAAAT TTAAAT TT-AAAT TTAA
24989983 TATTATTATA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
4 4 0.07
5 13 0.24
6 27 0.50
7 10 0.19
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:24989957 original size:17 final size:17
Alignment explanation
Indices: 24989930--24989997 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 17
24989920 TTTAATCTTA
*
24989930 AATTTACTTTAAA-TTC
1 AATTTAATTTAAATTTC
*
24989946 AATTTAAATTTAAATTTG
1 AATTT-AATTTAAATTTC
24989964 AATTTAATTTAAAATTT-
1 AATTTAATTT-AAATTTC
24989981 AATATT-ATTATAAATTT
1 AAT-TTAATT-TAAATTT
24989998 AAAAAGAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
16 5 0.11
17 24 0.53
18 16 0.36
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (17 bp):
AATTTAATTTAAATTTC
Found at i:24989967 original size:12 final size:12
Alignment explanation
Indices: 24989910--24989982 Score: 57
Period size: 11 Copynumber: 6.3 Consensus size: 12
24989900 CATTTGAAAA
24989910 TTAAATTT--AT
1 TTAAATTTAAAT
*
24989920 TTTAATCTTAAAT
1 TTAAAT-TTAAAT
*
24989933 TT-ACTTTAAA-
1 TTAAATTTAAAT
*
24989943 TTCAATTTAAAT
1 TTAAATTTAAAT
*
24989955 TTAAATTTGAAT
1 TTAAATTTAAAT
24989967 TT-AATTTAAAAT
1 TTAAATTT-AAAT
24989979 TTAA
1 TTAA
24989983 TATTATTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
10 7 0.14
11 19 0.38
12 19 0.38
13 5 0.10
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (12 bp):
TTAAATTTAAAT
Found at i:24989983 original size:12 final size:11
Alignment explanation
Indices: 24989907--24989983 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 11
24989897 AACCATTTGA
*
24989907 AAATTAAATTT
1 AAATTTAATTT
*
24989918 -ATTTTAATCTT
1 AAATTTAAT-TT
*
24989929 AAATTTACTTT
1 AAATTTAATTT
*
24989940 AAATTCAATTT
1 AAATTTAATTT
24989951 AAATTTAAATTT
1 AAATTT-AATTT
*
24989963 GAATTTAATTT
1 AAATTTAATTT
24989974 AAAATTTAAT
1 -AAATTTAAT
24989984 ATTATTATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
10 6 0.11
11 23 0.43
12 24 0.45
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (11 bp):
AAATTTAATTT
Found at i:24990113 original size:13 final size:13
Alignment explanation
Indices: 24990083--24990128 Score: 67
Period size: 12 Copynumber: 3.5 Consensus size: 13
24990073 ATTTTTCGGT
24990083 CCAAATTACAATGGC
1 CCAAATTA-AA-GGC
24990098 CCAAATTAAAGGC
1 CCAAATTAAAGGC
24990111 CC-AATTAAAGGC
1 CCAAATTAAAGGC
24990123 CCAAAT
1 CCAAAT
24990129 AGGCCCAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.40
13 8 0.27
14 2 0.07
15 8 0.27
ACGTcount: A:0.43, C:0.26, G:0.13, T:0.17
Consensus pattern (13 bp):
CCAAATTAAAGGC
Found at i:24990329 original size:20 final size:17
Alignment explanation
Indices: 24990291--24990325 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
24990281 CATTTAAGGG
24990291 TGAACAACAAAATAGCA
1 TGAACAACAAAATAGCA
24990308 TGAACAACAAAATAGCA
1 TGAACAACAAAATAGCA
24990325 T
1 T
24990326 CATGGTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.17, G:0.11, T:0.14
Consensus pattern (17 bp):
TGAACAACAAAATAGCA
Found at i:24990919 original size:29 final size:30
Alignment explanation
Indices: 24990826--24990908 Score: 148
Period size: 30 Copynumber: 2.8 Consensus size: 30
24990816 AAATTGTCCA
*
24990826 AAAATTATATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
24990856 AAAATTACATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
24990886 AAAATTACATTTTGACCCAAAAA
1 AAAATTACATTTTGACCCCAAAA
24990909 ATCTCCTAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.41, C:0.23, G:0.04, T:0.33
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:24991014 original size:30 final size:30
Alignment explanation
Indices: 24990921--24991016 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
24990911 CTCCTAAATC
* *
24990921 CCATTTTTAACCACGATTTCACCAAAATTTA
1 CCATTTTTAACCCCGATATCACCAAAA-TTA
* * * ***
24990952 CCA-TTTTACCCCCGAAACCTTTAAAATT-
1 CCATTTTTAACCCCGATATCACCAAAATTA
24990980 CCATTTTTAACCCCGATATCACCAAAATTA
1 CCATTTTTAACCCCGATATCACCAAAATTA
24991010 CCATTTT
1 CCATTTT
24991017 GCCCCCGGGT
Statistics
Matches: 49, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
28 3 0.06
29 21 0.43
30 22 0.45
31 3 0.06
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.34
Consensus pattern (30 bp):
CCATTTTTAACCCCGATATCACCAAAATTA
Found at i:24991022 original size:29 final size:29
Alignment explanation
Indices: 24990925--24991023 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 29
24990915 TAAATCCCAT
* * *
24990925 TTTTAACCACGATTTCACCAAAATTTACCA
1 TTTTACCCCCGATATCACCAAAA-TTACCA
* * ***
24990955 TTTTACCCCCGAAACCTTTAAAATT-CCA
1 TTTTACCCCCGATATCACCAAAATTACCA
*
24990983 TTTTTAACCCCGATATCACCAAAATTACCA
1 -TTTTACCCCCGATATCACCAAAATTACCA
*
24991013 TTTTGCCCCCG
1 TTTTACCCCCG
24991024 GGTATCCATA
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
28 3 0.06
29 30 0.59
30 18 0.35
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.32
Consensus pattern (29 bp):
TTTTACCCCCGATATCACCAAAATTACCA
Found at i:24992049 original size:10 final size:10
Alignment explanation
Indices: 24992034--24992066 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
24992024 TAGACCGACG
24992034 TTTTAAACGT
1 TTTTAAACGT
24992044 TTTTAAACGT
1 TTTTAAACGT
*
24992054 TTTTAAATGT
1 TTTTAAACGT
24992064 TTT
1 TTT
24992067 GTGGTGATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (10 bp):
TTTTAAACGT
Found at i:24995025 original size:26 final size:26
Alignment explanation
Indices: 24994996--24995045 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24994986 ATTAATTCTG
24994996 TTTAAATTTGAATTTATTTAATAATT
1 TTTAAATTTGAATTTATTTAATAATT
**
24995022 TTTATGTTTGAATTTATTTAATAA
1 TTTAAATTTGAATTTATTTAATAA
24995046 GGTTTAGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTAAATTTGAATTTATTTAATAATT
Found at i:24995051 original size:26 final size:26
Alignment explanation
Indices: 24995002--24995051 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24994992 TCTGTTTAAA
**
24995002 TTTGAATTTATTTAATAATTTTTATG
1 TTTGAATTTATTTAATAAGGTTTATG
24995028 TTTGAATTTATTTAATAAGGTTTA
1 TTTGAATTTATTTAATAAGGTTTA
24995052 GCAAATGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (26 bp):
TTTGAATTTATTTAATAAGGTTTATG
Found at i:24998172 original size:22 final size:21
Alignment explanation
Indices: 24998147--24998204 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
24998137 GGGAATAGCA
*
24998147 GGAGCAGCAGCAGCATCGACAG
1 GGAGCAGCAGCAGCAGCG-CAG
24998169 GGAGCAGCAGCAG-AGCGCAG
1 GGAGCAGCAGCAGCAGCGCAG
24998189 GG-GCAGCAGGCAGCAG
1 GGAGCAGCA-GCAGCAG
24998205 TCACGGGTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 5 0.15
22 13 0.39
ACGTcount: A:0.29, C:0.26, G:0.43, T:0.02
Consensus pattern (21 bp):
GGAGCAGCAGCAGCAGCGCAG
Found at i:24998355 original size:16 final size:15
Alignment explanation
Indices: 24998311--24998349 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
24998301 ATTTTTTTAG
*
24998311 TATT-TTTAAAAAAT
1 TATTATTTAAATAAT
24998325 TATTATTTAAATAAT
1 TATTATTTAAATAAT
24998340 TATTTATTTA
1 TA-TTATTTA
24998350 TTTAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.18
15 11 0.50
16 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTATTTAAATAAT
Found at i:25002592 original size:10 final size:10
Alignment explanation
Indices: 25002579--25002618 Score: 55
Period size: 9 Copynumber: 4.0 Consensus size: 10
25002569 TTTTGAGTAA
25002579 TTTAATTTTT
1 TTTAATTTTT
25002589 TTT-ATTTTT
1 TTTAATTTTT
25002598 TTTAACTTTTT
1 TTTAA-TTTTT
*
25002609 TTTTATTTTT
1 TTTAATTTTT
25002619 CATTCTCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 9 0.33
10 9 0.33
11 9 0.33
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTAATTTTT
Found at i:25002951 original size:24 final size:25
Alignment explanation
Indices: 25002918--25002970 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 25
25002908 ACTTGACACT
*
25002918 TTTTCTTAATTTGATATATTATTTA
1 TTTTCTTAATTTAATATATTATTTA
25002943 TTTT-TTAATTTAATATATTATTTA
1 TTTTCTTAATTTAATATATTATTTA
25002967 TTTT
1 TTTT
25002971 ATTATTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (25 bp):
TTTTCTTAATTTAATATATTATTTA
Found at i:25004116 original size:11 final size:12
Alignment explanation
Indices: 25004085--25004117 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25004075 AAAAATAGAT
25004085 AATTTATAAAAG
1 AATTTATAAAAG
*
25004097 AAGTTATAAAA-
1 AATTTATAAAAG
25004108 AATTTATAAA
1 AATTTATAAA
25004118 TAGATAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (12 bp):
AATTTATAAAAG
Found at i:25006198 original size:22 final size:22
Alignment explanation
Indices: 25006159--25006200 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
25006149 GCATTTCATT
* * *
25006159 AAAAAAAACATTATTAAAAACA
1 AAAAAAAAAATAAGTAAAAACA
25006181 AAAAAAAAAATAAGTAAAAA
1 AAAAAAAAAATAAGTAAAAA
25006201 ATATTGACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAAAAAAAATAAGTAAAAACA
Found at i:25013335 original size:53 final size:53
Alignment explanation
Indices: 25013255--25013359 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
25013245 AAGTTGGAGC
* * *
25013255 ATGCAGATCATTAATGTGCAATTTGTTGAGAAA-ATGTTCAAATTACAATTTAA
1 ATGCAAATCATAAATGTGCAACTTGTTGA-AAAGATGTTCAAATTACAATTTAA
*
25013308 ATGCAAATCATAAATGT-CGAACTTGTTGAAAAGATGTTCAAATTACGATTTA
1 ATGCAAATCATAAATGTGC-AACTTGTTGAAAAGATGTTCAAATTACAATTTA
25013360 CCAAACGTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
52 4 0.09
53 42 0.91
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (53 bp):
ATGCAAATCATAAATGTGCAACTTGTTGAAAAGATGTTCAAATTACAATTTAA
Found at i:25018844 original size:216 final size:216
Alignment explanation
Indices: 25018183--25018995 Score: 681
Period size: 216 Copynumber: 3.6 Consensus size: 216
25018173 TACAATGGTT
* *
25018183 TTGGTATTAGCCCTGTTATTGCATCGAAG-TTCCTGATATGCTCTTTCTTTTGGGACTTTTTTAT
1 TTGGTATTAACCCTGTTATTGCATTGAAGCTTCCTGATATGCTCTTTCTTTTGGGAC--------
* * * * *
25018247 TTTTTTTTACGGTTACATGATATAATGATCTTTGGATTCATTTTTCTTTGCCTATATATGGATAT
58 TTTTTTTTATGGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTTG-CTATATCT-G--AT
* ** * ** * * * * * *
25018312 ATAACTCTATTTGAGCCATGCGTATTACGATTGAATACTGTTGTTCAGGGTAGCTTAGTGGGTGA
119 ATAACTCTATTTGAGCCATGCTTACCATGATAAAATACAGTTGTTCGGGGAAGCTTAATAGATGA
* * ** * *
25018377 TAGTTCTGTTTTCGGTACGGTTTTTCCATACAA
184 TATTTCTGTTTACCCTACGGTTTTGCCATGCAA
* * * * *
25018410 TGGTTTTGGTATTAGCCCTGTGACTGTTAGTGTATCGAAGTTTCC-GATATGCTCTTTCTTTTGG
1 -----TTGGTATTA-ACC-----CTGTTATTGCATTGAAGCTTCCTGATATGCTCTTTCTTTTGG
* *
25018474 GAATTCTTTTTTATGGTTATATGATATAATGATCTTTGGTTTCGTTTTTTCTTTGCATATATCTG
55 GACTT-TTTTTTATGGTTATATGATATAATGATCTTTGGGTTC-TTTTTTCTTTGC-TATATCT-
* *
25018539 GATATAACTCTATTTGAGCCATGCTTACCATGATCAAATACAGTTGTTCGGGGTAGCTTAATAGA
116 GATATAACTCTATTTGAGCCATGCTTACCATGATAAAATACAGTTGTTCGGGGAAGCTTAATAGA
**
25018604 TGATATTTCTGTTTACGGTACGGTTTTGCCATGCAA
181 TGATATTTCTGTTTACCCTACGGTTTTGCCATGCAA
** * *
25018640 -TGGTATTAACTTTGTTATTGCATCT-AAGC-TGCTGATATGCTCATTCTTTTGGGACTTTTTTT
1 TTGGTATTAACCCTGTTATTGCAT-TGAAGCTTCCTGATATGCTCTTTCTTTTGGGACTTTTTTT
* *
25018702 TATGGTTATATGATATAATGATCTTTGGGTTCATTTTTCTTTGCTGATTTCTGTATATAACTCTA
65 TATGGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTTGCT-ATATCTG-ATATAACTCTA
* *** ** * * * *
25018767 TTTGAGCCTTGCTTGTTACT-ATAAAATATTGTTGTTTGGGGAAGCTTAATTGATGATCTTTTTG
128 TTTGAGCCATGCTTACCA-TGATAAAATACAGTTGTTCGGGGAAGCTTAATAGATGATATTTCTG
*
25018831 TTTTCCCTACGGTTTTGCCATGCAA
192 TTTACCCTACGGTTTTGCCATGCAA
* *
25018856 TGGTTTTGGTATTAACCCTGTTATTGGATTGAAGCTTCCT-ATATGCTCTTTCTTTTAGGAC--T
1 -----TTGGTATTAACCCTGTTATTGCATTGAAGCTTCCTGATATGCTCTTTCTTTTGGGACTTT
* *
25018918 TTTTTATGGTTGACTATGATATAATGATCTATGGGTTCTTTTTTCTATTCCTATATCTAGATATA
61 TTTTTATGGTT-A-TATGATATAATGATCTTTGGGTTCTTTTTTCT-TTGCTATATCT-GATATA
*
25018983 ACTCTATTCGAGC
122 ACTCTATTTGAGC
25018996 TATTCTTATT
Statistics
Matches: 491, Mismatches: 63, Indels: 64
0.79 0.10 0.10
Matches are distributed among these distances:
215 2 0.00
216 99 0.20
217 39 0.08
218 34 0.07
220 12 0.02
221 2 0.00
222 95 0.19
223 9 0.02
224 8 0.02
230 87 0.18
231 35 0.07
232 27 0.05
233 2 0.00
238 36 0.07
239 4 0.01
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (216 bp):
TTGGTATTAACCCTGTTATTGCATTGAAGCTTCCTGATATGCTCTTTCTTTTGGGACTTTTTTTT
ATGGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTTGCTATATCTGATATAACTCTATTT
GAGCCATGCTTACCATGATAAAATACAGTTGTTCGGGGAAGCTTAATAGATGATATTTCTGTTTA
CCCTACGGTTTTGCCATGCAA
Found at i:25019023 original size:222 final size:217
Alignment explanation
Indices: 25018175--25019073 Score: 769
Period size: 222 Copynumber: 4.0 Consensus size: 217
25018165 GTTTCCAGTA
* * *
25018175 CAATGGTTTTGGTATTAGCCCTGTTATTGCATCGAAG-TTCCTGATATGCTCTTTCTTTTGGGAC
1 CAATGGTTTTGGTATTAACCCTGTTATTGGATTGAAGCTTCCT-ATATGCTCTTTCTTTTGGGAC
* * *
25018239 TTTTTTATTTTTTTTTACGGTTACATGATATAATGATCTTTGGATTCATTTTTCTTTGCCTATAT
65 TTTTTTA--------T--GGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTT-CCTATAT
* * * * ** * *
25018304 ATGGATATATAACTCTATTTGAGCCATGCGTATTACGATTGAATACTGTTGTTCAGGGTAGCTTA
119 CT-G--ATATAACTCTATTTGAGCTATGCTTATTATGATCAAATATTGTTGTTCGGGGTAGCTTA
* * * * * * * *
25018369 GTGGGTGATAGTTCTGTTTTCGGTACGGTTTTTCCATA
181 ATAGATGAT-TTTTTGTTTTCCGTACGGTTTTGCCATG
* * * * *
25018407 CAATGGTTTTGGTATTAGCCCTGTGACTGTTAGTGTATCGAAGTTTCCGATATGCTCTTTCTTTT
1 CAATGGTTTTGGTATTAACCCTGT---TATT-G-G-ATTGAAGCTTCCTATATGCTCTTTCTTTT
* *
25018472 GGGAATTCTTTTTTATGGTTATATGATATAATGATCTTTGGTTTCGTTTTTTCTTTGCATATATC
60 GGG-A--CTTTTTTATGGTTATATGATATAATGATCTTTGGGTTC-TTTTTTCTTT-CCTATATC
* ** **
25018537 TGGATATAACTCTATTTGAGCCATGCTTACCATGATCAAATACAGTTGTTCGGGGTAGCTTAATA
120 T-GATATAACTCTATTTGAGCTATGCTTATTATGATCAAATATTGTTGTTCGGGGTAGCTTAATA
* * *
25018602 GATGATATTTCTGTTTACGGTACGGTTTTGCCATG
184 GATGAT-TTTTTGTTTTCCGTACGGTTTTGCCATG
** * * *
25018637 CAA------TGGTATTAACTTTGTTATTGCATCT-AAGC-TGCTGATATGCTCATTCTTTTGGGA
1 CAATGGTTTTGGTATTAACCCTGTTATTGGAT-TGAAGCTTCCT-ATATGCTCTTTCTTTTGGGA
* * *
25018694 CTTTTTTTTATGGTTATATGATATAATGATCTTTGGGTTCATTTTTCTTTGCTGATTTCTGTATA
64 C--TTTTTTATGGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTTCCT-ATATCTG-ATA
* * * * *
25018759 TAACTCTATTTGAGCCT-TGCTTGTTACT-ATAAAATATTGTTGTTTGGGGAAGCTTAATTGATG
125 TAACTCTATTTGAG-CTATGCTTATTA-TGATCAAATATTGTTGTTCGGGGTAGCTTAATAGATG
*
25018822 ATCTTTTTGTTTTCCCTACGGTTTTGCCATG
188 AT-TTTTTGTTTTCCGTACGGTTTTGCCATG
*
25018853 CAATGGTTTTGGTATTAACCCTGTTATTGGATTGAAGCTTCCTATATGCTCTTTCTTTTAGGACT
1 CAATGGTTTTGGTATTAACCCTGTTATTGGATTGAAGCTTCCTATATGCTCTTTCTTTTGGGACT
*
25018918 TTTTTATGGTTGACTATGATATAATGATCTATGGGTTCTTTTTTCTATTCCTATATCTAGATATA
66 TTTTTATGGTT-A-TATGATATAATGATCTTTGGGTTCTTTTTTCT-TTCCTATATCT-GATATA
* * * * *
25018983 ACTCTATTCGAGCTATTCTTATTATGATCAACTTTTGTTGTTCCGGGTAGCTTAATCA-ATGATT
127 ACTCTATTTGAGCTATGCTTATTATGATCAAATATTGTTGTTCGGGGTAGCTTAAT-AGATGATT
* * *
25019047 TTTGTGTTTTCCATAAGGTTTTTCCAT
191 TTT-TGTTTTCCGTACGGTTTTGCCAT
25019074 TGTACTTGCT
Statistics
Matches: 556, Mismatches: 76, Indels: 80
0.78 0.11 0.11
Matches are distributed among these distances:
215 3 0.01
216 95 0.17
217 41 0.07
218 23 0.04
220 13 0.02
221 12 0.02
222 150 0.27
223 8 0.01
224 12 0.02
230 85 0.15
231 27 0.05
232 43 0.08
233 1 0.00
235 3 0.01
236 1 0.00
238 26 0.05
239 5 0.01
241 8 0.01
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (217 bp):
CAATGGTTTTGGTATTAACCCTGTTATTGGATTGAAGCTTCCTATATGCTCTTTCTTTTGGGACT
TTTTTATGGTTATATGATATAATGATCTTTGGGTTCTTTTTTCTTTCCTATATCTGATATAACTC
TATTTGAGCTATGCTTATTATGATCAAATATTGTTGTTCGGGGTAGCTTAATAGATGATTTTTTG
TTTTCCGTACGGTTTTGCCATG
Found at i:25021311 original size:16 final size:17
Alignment explanation
Indices: 25021279--25021311 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25021269 CTTTGATAGA
25021279 AATTTTATTTTTAATAT
1 AATTTTATTTTTAATAT
*
25021296 AATTTT-TTTTTCATAT
1 AATTTTATTTTTAATAT
25021312 TTTGATTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
AATTTTATTTTTAATAT
Found at i:25029777 original size:18 final size:18
Alignment explanation
Indices: 25029756--25029795 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25029746 ACCTATTGAA
* *
25029756 TTAAAAATTTATTATTTT
1 TTAAAAATTTAATAATTT
*
25029774 TTAAAATTTTAATAATTT
1 TTAAAAATTTAATAATTT
25029792 TTAA
1 TTAA
25029796 TTGATCCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAAAAATTTAATAATTT
Found at i:25030104 original size:22 final size:19
Alignment explanation
Indices: 25030064--25030106 Score: 50
Period size: 22 Copynumber: 2.1 Consensus size: 19
25030054 TTAATTTAAA
*
25030064 TATTATTTAAATACTTATT
1 TATTATTTAAATACATATT
25030083 TATTATTTTATAATATCATATT
1 TATTA-TTTA-AATA-CATATT
25030105 TA
1 TA
25030107 AAATAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 4 0.20
22 7 0.35
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTATTTAAATACATATT
Found at i:25034614 original size:20 final size:20
Alignment explanation
Indices: 25034586--25034629 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
25034576 TAAAATGTGG
* * *
25034586 TTAAGAAAACATTTGTTATT
1 TTAAAAAAACATTTCTTATA
*
25034606 TTAAAAAAATATTTCTTATA
1 TTAAAAAAACATTTCTTATA
25034626 TTAA
1 TTAA
25034630 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (20 bp):
TTAAAAAAACATTTCTTATA
Found at i:25035275 original size:29 final size:30
Alignment explanation
Indices: 25035221--25035280 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
25035211 AAACAGTTTC
*
25035221 TTTATGGTTTCATTGATCCAACATTTTATT
1 TTTATGGTTTCATTGATCCAACATTTAATT
*
25035251 TTTA-GGTTTCATGTGATCGAA-ATTTAATT
1 TTTATGGTTTCAT-TGATCCAACATTTAATT
25035280 T
1 T
25035281 GTTTTCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.52
Consensus pattern (30 bp):
TTTATGGTTTCATTGATCCAACATTTAATT
Found at i:25050415 original size:30 final size:30
Alignment explanation
Indices: 25050380--25050439 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25050370 AATTATACGA
*
25050380 AAAAGCCACACCCAATACGTTAGGGCATGG
1 AAAAGCCACACCCAACACGTTAGGGCATGG
* *
25050410 AAAAGCCACACTCAGCACGTTAGGGCATGG
1 AAAAGCCACACCCAACACGTTAGGGCATGG
25050440 TTTTTCAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.27, G:0.25, T:0.13
Consensus pattern (30 bp):
AAAAGCCACACCCAACACGTTAGGGCATGG
Found at i:25050891 original size:59 final size:56
Alignment explanation
Indices: 25050787--25051010 Score: 184
Period size: 59 Copynumber: 3.8 Consensus size: 56
25050777 TGGACACTTG
* ** * *
25050787 GGGGTGAAAATGGTAATTTTCGGATGTTC-GAGGTAAAACGGTAATTTCTGAAAAGTTTA
1 GGGGT-AAAAT-GTAATTTTTGGAAATTCGGGGGTAAAA-TGTAATTT-TGAAAAGTTTA
* * * *
25050846 -GGGTAAAAAATGTAATTTTTGGACATTCGGGGGTAAAATGATAATTTTTAGATGTTTA
1 GGGGT--AAAATGTAATTTTTGGAAATTCGGGGGTAAAATG-TAATTTTGAAAAGTTTA
** *
25050904 GGGGTAAAATGGTAA-TTTTGGAAAGTTTAGGGTTAAAAATGTAATTTTGAAATAGTTTA
1 GGGGTAAAAT-GTAATTTTTGGAAA-TTCGGGGGT-AAAATGTAATTTTGAAA-AGTTTA
* *
25050963 GGGGTTATAATGTAATTTTTGGAATATTCGAGGGTAAAATGTAATTTT
1 GGGG-TAAAATGTAATTTTTGGAA-ATTCGGGGGTAAAATGTAATTTT
25051011 TGGAAGGGTT
Statistics
Matches: 133, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
57 13 0.10
58 46 0.35
59 55 0.41
60 18 0.14
61 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (56 bp):
GGGGTAAAATGTAATTTTTGGAAATTCGGGGGTAAAATGTAATTTTGAAAAGTTTA
Found at i:25050893 original size:29 final size:28
Alignment explanation
Indices: 25050852--25051053 Score: 94
Period size: 29 Copynumber: 7.1 Consensus size: 28
25050842 TTTAGGGTAA
* *
25050852 AAAATGTAATTTTTGGACATTCGGGGGT
1 AAAATGTAATTTTTAGACATTCAGGGGT
** *
25050880 AAAATGATAATTTTTAGATGTTTAGGGGT
1 AAAATG-TAATTTTTAGACATTCAGGGGT
* * * *
25050909 AAAATGGTAA-TTTTGGAAAGTTTAGGGTT
1 AAAAT-GTAATTTTTAGACA-TTCAGGGGT
* * * *
25050938 AAAAATGTAATTTTGAAATAGTTTAGGGGTT
1 -AAAATGTAATTTTTAGACA-TTCAGGGG-T
* * *
25050969 ATAATGTAATTTTTGGAATATTC-GAGGGT
1 AAAATGTAATTTTTAG-ACATTCAG-GGGT
* *
25050998 AAAATGTAATTTTT-G-GA---AGGGTT
1 AAAATGTAATTTTTAGACATTCAGGGGT
* *
25051021 AAAATGTAATTTTTAGAAAGTTCGGGGGT
1 AAAATGTAATTTTTAGACA-TTCAGGGGT
25051050 AAAA
1 AAAA
25051054 ATATGATTTC
Statistics
Matches: 134, Mismatches: 25, Indels: 29
0.71 0.13 0.15
Matches are distributed among these distances:
23 17 0.13
24 2 0.01
25 1 0.01
26 1 0.01
28 13 0.10
29 60 0.45
30 36 0.27
31 4 0.03
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (28 bp):
AAAATGTAATTTTTAGACATTCAGGGGT
Found at i:25050931 original size:87 final size:88
Alignment explanation
Indices: 25050769--25050951 Score: 255
Period size: 87 Copynumber: 2.1 Consensus size: 88
25050759 GAGTAAAACG
* * *
25050769 GTAATTTTTGGACACTTGGGGGTGAAAATGGTAATTTTCGGATGTTCGAGGTAAAACGGTAATTT
1 GTAATTTTTGGACACTTGGGGGTGAAAATGATAATTTTCAGATGTTAGAGGTAAAACGGTAATTT
25050834 CTGAAAAGTTTAGGGTAAAAAAT
66 CTGAAAAGTTTAGGGTAAAAAAT
* * *
25050857 GTAATTTTTGGACA-TTCGGGGGT-AAAATGATAATTTTTAGATGTTTAGGGGTAAAATGGTAAT
1 GTAATTTTTGGACACTT-GGGGGTGAAAATGATAATTTTCAGATG-TTAGAGGTAAAACGGTAAT
* *
25050920 TT-TGGAAAGTTTAGGGTTAAAAAT
64 TTCTGAAAAGTTTAGGGTAAAAAAT
25050944 GTAATTTT
1 GTAATTTT
25050952 GAAATAGTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
87 47 0.55
88 38 0.45
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (88 bp):
GTAATTTTTGGACACTTGGGGGTGAAAATGATAATTTTCAGATGTTAGAGGTAAAACGGTAATTT
CTGAAAAGTTTAGGGTAAAAAAT
Found at i:25050961 original size:30 final size:29
Alignment explanation
Indices: 25050827--25051010 Score: 121
Period size: 29 Copynumber: 6.3 Consensus size: 29
25050817 AGGTAAAACG
*
25050827 GTAATTTCTGAAA-AGTTTAGGGTAAAAAAT
1 GTAATTT-TGAAATAGTTTAGGGT-TAAAAT
* * ** *
25050857 GTAATTTTTG-GACA-TTCGGGGGTAAAAT
1 GTAA-TTTTGAAATAGTTTAGGGTTAAAAT
* * *
25050885 GATAATTTTTAGAT-GTTTAGGGGTAAAAT
1 G-TAATTTTGAAATAGTTTAGGGTTAAAAT
*
25050914 GGTAATTTTGGAA-AGTTTAGGGTTAAAAAT
1 -GTAATTTTGAAATAGTTTAGGGTT-AAAAT
*
25050944 GTAATTTTGAAATAGTTTAGGGGTTATAAT
1 GTAATTTTGAAATAGTTTA-GGGTTAAAAT
* *
25050974 GTAATTTTTGGAATA-TTCGAGGG-TAAAAT
1 GTAA-TTTTGAAATAGTT-TAGGGTTAAAAT
25051003 GTAATTTT
1 GTAATTTT
25051011 TGGAAGGGTT
Statistics
Matches: 124, Mismatches: 18, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
28 14 0.11
29 60 0.48
30 32 0.26
31 18 0.15
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.39
Consensus pattern (29 bp):
GTAATTTTGAAATAGTTTAGGGTTAAAAT
Found at i:25052721 original size:6 final size:6
Alignment explanation
Indices: 25052712--25052792 Score: 69
Period size: 6 Copynumber: 14.0 Consensus size: 6
25052702 ATTTGGACTT
* * ** *
25052712 TTTAAA TTTAAA -ATAAT TTTAAA TTTAAA AGTAAA TTTAAA CTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* **
25052758 TTTAAA CTTAAA TTTAAA -ACAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
25052793 ACAAATTTAA
Statistics
Matches: 56, Mismatches: 16, Indels: 6
0.72 0.21 0.08
Matches are distributed among these distances:
5 10 0.18
6 46 0.82
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:25052733 original size:17 final size:17
Alignment explanation
Indices: 25052712--25052820 Score: 121
Period size: 17 Copynumber: 6.4 Consensus size: 17
25052702 ATTTGGACTT
*
25052712 TTTAAATTTAAAATAAT
1 TTTAAATTTAAAATAAA
25052729 TTTAAATTTAAAAGTAAA
1 TTTAAATTTAAAA-TAAA
* **
25052747 TTTAAACTTAATTTAAA
1 TTTAAATTTAAAATAAA
* *
25052764 CTTAAATTTAAAACAAA
1 TTTAAATTTAAAATAAA
*
25052781 TTTAAATTTAAAACAAA
1 TTTAAATTTAAAATAAA
*
25052798 TTT-AATCTTGAAATAAA
1 TTTAAAT-TTAAAATAAA
25052815 TTTAAA
1 TTTAAA
25052821 AAAAGGTTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
16 3 0.04
17 59 0.77
18 15 0.19
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:25052747 original size:29 final size:29
Alignment explanation
Indices: 25052714--25052769 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
25052704 TTGGACTTTT
*
25052714 TAAATTTAAA-ATAATTTTAAATTTAAAAG
1 TAAATTTAAACATAA-TTTAAACTTAAAAG
*
25052743 TAAATTTAAACTTAATTTAAACTTAAA
1 TAAATTTAAACATAATTTAAACTTAAA
25052770 TTTAAAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (29 bp):
TAAATTTAAACATAATTTAAACTTAAAAG
Found at i:25052782 original size:23 final size:23
Alignment explanation
Indices: 25052731--25052792 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
25052721 AAAATAATTT
*
25052731 TAAATTTAAAAGTAAATTTAAAC
1 TAAATTTAAAATTAAATTTAAAC
* *
25052754 TTAATTTAAACTTAAATTTAAAAC
1 TAAATTTAAAATTAAATTT-AAAC
*
25052778 -AAATTTAAATTTAAA
1 TAAATTTAAAATTAAA
25052793 ACAAATTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 29 0.88
24 4 0.12
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAATTTAAAATTAAATTTAAAC
Found at i:25052802 original size:11 final size:12
Alignment explanation
Indices: 25052731--25052786 Score: 64
Period size: 11 Copynumber: 4.8 Consensus size: 12
25052721 AAAATAATTT
*
25052731 TAAATTTAAAAG
1 TAAATTTAAAAC
25052743 TAAATTT-AAAC
1 TAAATTTAAAAC
*
25052754 TTAATTT-AAAC
1 TAAATTTAAAAC
25052765 TTAAATTTAAAAC
1 -TAAATTTAAAAC
25052778 -AAATTTAAA
1 TAAATTTAAA
25052787 TTTAAAACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 22 0.56
12 13 0.33
13 4 0.10
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (12 bp):
TAAATTTAAAAC
Found at i:25053668 original size:162 final size:162
Alignment explanation
Indices: 25053401--25053703 Score: 561
Period size: 162 Copynumber: 1.9 Consensus size: 162
25053391 CCGCTTCTCT
*
25053401 GTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATTTCATCAGGAAGC
1 GTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
*
25053466 TAGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGAGTTGGTATACTTCTCTGTATCT
66 TAGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCT
25053531 CATCAGGAAGACGAATTTTGGTCCACTTCTTA
131 CATCAGGAAGACGAATTTTGGTCCACTTCTTA
**
25053563 GTATCTCATCAGGAAGCTGACCATTTTATTTTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
1 GTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
*
25053628 TGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCT
66 TAGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCT
25053693 CATCAGGAAGA
131 CATCAGGAAGA
25053704 TGACCGCCTC
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 136 1.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (162 bp):
GTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
TAGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCT
CATCAGGAAGACGAATTTTGGTCCACTTCTTA
Found at i:25053760 original size:211 final size:211
Alignment explanation
Indices: 25053518--25053928 Score: 696
Period size: 211 Copynumber: 1.9 Consensus size: 211
25053508 AGTTGGTATA
* * * *
25053518 CTTCTCTGTATCTCATCAGGAAGACGAATTTTGGTCCACTTCTTAGTATCTCATCAGGAAGCTGA
1 CTTCTCTGTATCTCATCAAGAAGACGAATTTTGGTCAACTTCTCAGTATCTCATCAGGAAGCTAA
** * *
25053583 CCATTTTATTTTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTC
66 CCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGTTTCACTC
*
25053648 ACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCT
131 ACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
25053713 CACTTGTTTCAATCCG
196 CACTTGTTTCAATCCG
*
25053729 CTTCTCTGTATCTCATCAAGAAGATGAATTTTGGTCAACTTCTCAGTATCTCATCAGGAAGCTAA
1 CTTCTCTGTATCTCATCAAGAAGACGAATTTTGGTCAACTTCTCAGTATCTCATCAGGAAGCTAA
*
25053794 CTATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGTTTCACTC
66 CCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGTTTCACTC
* * *
25053859 ACATCGAGCTTTGGTTTCATTGAGTTGGTATACTTCTCTGTATCTCATCAAGAAGTTGATCGCCT
131 ACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
25053924 CACTT
196 CACTT
25053929 ATTTTGATTT
Statistics
Matches: 186, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
211 186 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (211 bp):
CTTCTCTGTATCTCATCAAGAAGACGAATTTTGGTCAACTTCTCAGTATCTCATCAGGAAGCTAA
CCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGTTTCACTC
ACATCGAGCTTTGGTTTCATTGAGTTAGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
CACTTGTTTCAATCCG
Found at i:25060534 original size:29 final size:29
Alignment explanation
Indices: 25060502--25060781 Score: 178
Period size: 29 Copynumber: 9.7 Consensus size: 29
25060492 GGATGCCCGA
* *
25060502 GGGTAAAATGGTAATTTTTGTAGGTTCAG
1 GGGTAAAATGGTAATTTTTGGACGTTCAG
* * **
25060531 GGGTAAAACGATAA-TTTTGGACACTC-G
1 GGGTAAAATGGTAATTTTTGGACGTTCAG
* * * * *
25060558 AGGGTGAAAACGATAATTTTCGGATGTTCTG
1 -GGGT-AAAATGGTAATTTTTGGACGTTCAG
* * * *
25060589 GGATAAAACGGTAA-TTTTGGACACTTCGG
1 GGGTAAAATGGTAATTTTTGGAC-GTTCAG
*
25060618 GGGTAAAATGGTAATTTTTGGACGTTCAA
1 GGGTAAAATGGTAATTTTTGGACGTTCAG
* ** *
25060647 GGGTAAAATTGTAATTTTTGGACACTCGG
1 GGGTAAAATGGTAATTTTTGGACGTTCAG
** * *
25060676 GGGTAAAATGGTAATTTTTAAAAGTT-TG
1 GGGTAAAATGGTAATTTTTGGACGTTCAG
* **
25060704 GGGTTAAAAAT-GCAATTTTTGGATATTC-G
1 GGG-T-AAAATGGTAATTTTTGGACGTTCAG
* * *
25060733 AGGGTAAAATAGTAATTTTTGGATGTTTAG
1 -GGGTAAAATGGTAATTTTTGGACGTTCAG
*
25060763 GGGTAAAAT-TTAATTTTTG
1 GGGTAAAATGGTAATTTTTG
25060782 AAAAGTTTAA
Statistics
Matches: 197, Mismatches: 42, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.01
28 36 0.18
29 131 0.66
30 28 0.14
31 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (29 bp):
GGGTAAAATGGTAATTTTTGGACGTTCAG
Found at i:25060604 original size:58 final size:56
Alignment explanation
Indices: 25060499--25060770 Score: 238
Period size: 58 Copynumber: 4.7 Consensus size: 56
25060489 TTTGGATGCC
* * *
25060499 CGAGGGTAAAATGGTAATTTTTGTAGGTTCAGGGGTAAAACGATAATTTTGGACACT
1 CGAGGGTAAAATGGTAATTTTTGGACGTTCA-GGGTAAAACGGTAATTTTGGACACT
* * * * *
25060556 CGAGGGTGAAAACGATAATTTTCGGATGTTCTGGGATAAAACGGTAATTTTGGACACTT
1 CGAGGGT-AAAATGGTAATTTTTGGACGTTCAGGG-TAAAACGGTAATTTTGGACAC-T
* **
25060615 CGGGGGTAAAATGGTAATTTTTGGACGTTCAAGGGTAAAATTGTAATTTTTGGACACT
1 CGAGGGTAAAATGGTAATTTTTGGACGTTC-AGGGTAAAACGGTAA-TTTTGGACACT
* ** * ** ** * * *
25060673 CGGGGGTAAAATGGTAATTTTTAAAAGTTTGGGGTTAAAAATGCAATTTTTGGATATT
1 CGAGGGTAAAATGGTAATTTTTGGACGTTCAGGG-TAAAACGGTAA-TTTTGGACACT
* * *
25060731 CGAGGGTAAAATAGTAATTTTTGGATGTTTAGGGGTAAAA
1 CGAGGGTAAAATGGTAATTTTTGGACGTTCA-GGGTAAAA
25060771 TTTAATTTTT
Statistics
Matches: 178, Mismatches: 30, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
57 13 0.07
58 142 0.80
59 23 0.13
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (56 bp):
CGAGGGTAAAATGGTAATTTTTGGACGTTCAGGGTAAAACGGTAATTTTGGACACT
Found at i:25060662 original size:87 final size:87
Alignment explanation
Indices: 25060545--25060759 Score: 200
Period size: 87 Copynumber: 2.5 Consensus size: 87
25060535 AAAACGATAA
* * * * * *
25060545 TTTTGGACACTCGAGGGTGAAAA-CGATAATTTTCGGATGTTCTGGGATAAAACGGTAATTTTGG
1 TTTTGGACATTCAAGGGT-AAAATAG-TAATTTTTGGATGTTCGGGGATAAAACGGTAATTTTGA
* *
25060609 ACACTTCGGGGGT-AAAATGGTAAT
64 AAACTTCGGGGGTAAAAAT-GCAAT
* * *** * * *
25060633 TTTTGGACGTTCAAGGGTAAAATTGTAATTTTTGGACACTCGGGGGTAAAATGGTAATTTTTAAA
1 TTTTGGACATTCAAGGGTAAAATAGTAATTTTTGGATGTTCGGGGATAAAACGGTAATTTTGAAA
* * *
25060698 AGTTTGGGGTTAAAAATGCAAT
66 ACTTCGGGGGTAAAAATGCAAT
* *
25060720 TTTTGGATATTCGAGGGTAAAATAGTAATTTTTGGATGTT
1 TTTTGGACATTCAAGGGTAAAATAGTAATTTTTGGATGTT
25060760 TAGGGGTAAA
Statistics
Matches: 100, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
87 79 0.79
88 21 0.21
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (87 bp):
TTTTGGACATTCAAGGGTAAAATAGTAATTTTTGGATGTTCGGGGATAAAACGGTAATTTTGAAA
ACTTCGGGGGTAAAAATGCAAT
Found at i:25060789 original size:29 final size:29
Alignment explanation
Indices: 25060617--25060907 Score: 145
Period size: 29 Copynumber: 9.9 Consensus size: 29
25060607 GGACACTTCG
* * *
25060617 GGGGTAAAATGGTAATTTTTG-GACGTTCA
1 GGGGTAAAAT-GTAATTTTTGAAAAGTTTA
* * * * **
25060646 AGGGTAAAATTGTAATTTTTGGACA-CTCG
1 GGGGTAAAA-TGTAATTTTTGAAAAGTTTA
25060675 GGGGTAAAATGGTAATTTTT-AAAAGTTT-
1 GGGGTAAAAT-GTAATTTTTGAAAAGTTTA
* * * *
25060703 GGGGTTAAAAATGCAATTTTTGGATA--TTC
1 GGGG-T-AAAATGTAATTTTTGAAAAGTTTA
* *
25060732 GAGGGTAAAATAGTAATTTTTG-GATGTTTA
1 G-GGGTAAAAT-GTAATTTTTGAAAAGTTTA
*
25060762 GGGGTAAAATTTAATTTTTGAAAAGTTTA
1 GGGGTAAAATGTAATTTTTGAAAAGTTTA
** **
25060791 -ATGTAAAAAATGTAATTTGGGAACAA-TTTAA
1 GGGGT--AAAATGTAATTTTTGAA-AAGTTT-A
* * *
25060822 GGGTTAAAATGTATTTTTTAAAAAGTTTA
1 GGGGTAAAATGTAATTTTTGAAAAGTTTA
*
25060851 GGGGCAAAATGTAATTTTT-AGAAAGTTT-
1 GGGGTAAAATGTAATTTTTGA-AAAGTTTA
* *
25060879 GAGGGTCAAAATATAATTTTTGGAAAGTT
1 G-GGGT-AAAATGTAATTTTTGAAAAGTT
25060908 CGAAGGTAAA
Statistics
Matches: 199, Mismatches: 40, Indels: 45
0.70 0.14 0.16
Matches are distributed among these distances:
28 27 0.14
29 102 0.51
30 66 0.33
31 3 0.02
32 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.37
Consensus pattern (29 bp):
GGGGTAAAATGTAATTTTTGAAAAGTTTA
Found at i:25060906 original size:59 final size:60
Alignment explanation
Indices: 25060675--25060907 Score: 162
Period size: 58 Copynumber: 4.0 Consensus size: 60
25060665 TGGACACTCG
* * * *
25060675 GGGGTAAAATGGTAATTTTTA-AAAGTTTG-GGGTTAAAA-ATGCAATTTTTGGATA--TTC
1 GGGGTAAAATAGTAATTTTTAGAAAGTTTGAGGGTTAAAATAT--AATTTTTGAAAAGTTTA
* * * *
25060732 GAGGGTAAAATAGTAATTTTT-GGATGTTT-AGGGGTAAAATTTAATTTTTGAAAAGTTTA
1 G-GGGTAAAATAGTAATTTTTAGAAAGTTTGAGGGTTAAAATATAATTTTTGAAAAGTTTA
** * ** * * * * *
25060791 -ATGTAAAAAATGTAA-TTTGGGAACAATTTAAGGGTTAAAATGTATTTTTTAAAAAGTTTA
1 GGGGTAAAATA-GTAATTTTTAGAA-AGTTTGAGGGTTAAAATATAATTTTTGAAAAGTTTA
* * *
25060851 GGGGCAAAAT-GTAATTTTTAGAAAGTTTGAGGGTCAAAATATAATTTTTGGAAAGTT
1 GGGGTAAAATAGTAATTTTTAGAAAGTTTGAGGGTTAAAATATAATTTTTGAAAAGTT
25060908 CGAAGGTAAA
Statistics
Matches: 132, Mismatches: 32, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
57 21 0.16
58 37 0.28
59 37 0.28
60 32 0.24
61 5 0.04
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.38
Consensus pattern (60 bp):
GGGGTAAAATAGTAATTTTTAGAAAGTTTGAGGGTTAAAATATAATTTTTGAAAAGTTTA
Found at i:25060920 original size:30 final size:30
Alignment explanation
Indices: 25060856--25060938 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
25060846 GTTTAGGGGC
* * * * *
25060856 AAAATGTAATTTTTAGAAAGTTTGAGGGTC
1 AAAATATAATTTTTGGAAAGTTCGAAGGTA
25060886 AAAATATAATTTTTGGAAAGTTCGAAGGTA
1 AAAATATAATTTTTGGAAAGTTCGAAGGTA
* *
25060916 AAAATATGATTTTTGGACAGTTC
1 AAAATATAATTTTTGGAAAGTTC
25060939 AGGGACCTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (30 bp):
AAAATATAATTTTTGGAAAGTTCGAAGGTA
Found at i:25062602 original size:23 final size:24
Alignment explanation
Indices: 25062558--25062609 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
25062548 TTTGGACTTT
*
25062558 TTAAATTTAAAAGTAAATTTAAAC
1 TTAAATTTAAAAGCAAATTTAAAC
* *
25062582 TTAAATTTGAAA-CAAATTTAAAT
1 TTAAATTTAAAAGCAAATTTAAAC
25062605 TTAAA
1 TTAAA
25062610 ACAAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (24 bp):
TTAAATTTAAAAGCAAATTTAAAC
Found at i:25062604 original size:17 final size:17
Alignment explanation
Indices: 25062582--25062637 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
25062572 AAATTTAAAC
*
25062582 TTAAATTTGAAACAAAT
1 TTAAATTTAAAACAAAT
25062599 TTAAATTTAAAACAAAT
1 TTAAATTTAAAACAAAT
*
25062616 TT-AATCTTAAAATAAAT
1 TTAAAT-TTAAAACAAAT
25062633 TTAAA
1 TTAAA
25062638 AAAAAGTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
16 3 0.09
17 30 0.86
18 2 0.06
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (17 bp):
TTAAATTTAAAACAAAT
Found at i:25064285 original size:40 final size:41
Alignment explanation
Indices: 25064215--25064298 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 41
25064205 TACTTACAAA
25064215 TTATTCGAGTTCAATTTAAAAATTATATATTTAAATTCGGT
1 TTATTCGAGTTCAATTTAAAAATTATATATTTAAATTCGGT
25064256 TTATTCGAGTTCAA-TTAAAAATTATATATTTAAATTCGGT
1 TTATTCGAGTTCAATTTAAAAATTATATATTTAAATTCGGT
25064296 TTA
1 TTA
25064299 ATTAATTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 29 0.67
41 14 0.33
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (41 bp):
TTATTCGAGTTCAATTTAAAAATTATATATTTAAATTCGGT
Done.