Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 113 of 144
Found at i:26388812 original size:16 final size:15
Alignment explanation
Indices: 26388786--26388815 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26388776 TTAGTATTTT
26388786 TATTTTTAAAATATA
1 TATTTTTAAAATATA
26388801 TATTTCTTAAAATAT
1 TATTT-TTAAAATAT
26388816 TTTGATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTTTAAAATATA
Found at i:26388898 original size:15 final size:14
Alignment explanation
Indices: 26388878--26388907 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
26388868 ATACATTAGC
26388878 AATATATATCTTTTA
1 AATATATAT-TTTTA
26388893 AATATATATTTTTA
1 AATATATATTTTTA
26388907 A
1 A
26388908 TGTTCTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
AATATATATTTTTA
Found at i:26390183 original size:25 final size:23
Alignment explanation
Indices: 26390130--26390192 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
26390120 TTATGCCAAC
*
26390130 AAATA-TTTATAAAGTTAAAAATT
1 AAATATTTTATAAA-TGAAAAATT
26390153 ATAATATTTTATAAATGAAATATATT
1 A-AATATTTTATAAATGAAA-A-ATT
26390179 AAATATTTTA-AAAT
1 AAATATTTTATAAAT
26390193 ATTCAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
23 1 0.03
24 12 0.34
25 18 0.51
26 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (23 bp):
AAATATTTTATAAATGAAAAATT
Found at i:26391031 original size:57 final size:57
Alignment explanation
Indices: 26390943--26391057 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
26390933 GGTTGCAAAG
* *
26390943 TCAGCATGGTGGTTAACATTTCCTCAGTTTTCACTTACTTATTTACCTCACTCGATT
1 TCAGCATGGTGGTTAACATTCCCTCAGTTTTCACTTACTCATTTACCTCACTCGATT
*
26391000 TCAGCATGGTGGTTAACGTTCCCTCAGTTTTCACTTACTCATTTACCTCACTCGATT
1 TCAGCATGGTGGTTAACATTCCCTCAGTTTTCACTTACTCATTTACCTCACTCGATT
26391057 T
1 T
26391058 TTGATCATTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (57 bp):
TCAGCATGGTGGTTAACATTCCCTCAGTTTTCACTTACTCATTTACCTCACTCGATT
Found at i:26403193 original size:60 final size:60
Alignment explanation
Indices: 26403100--26403434 Score: 397
Period size: 60 Copynumber: 5.6 Consensus size: 60
26403090 GAAATGCAAA
* * * *
26403100 TCCGATGACTTTGTGTCATCATAAGTATTAAATGCAATGAATCAAATTACAGATTAAAGG
1 TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
*
26403160 TCCGATGAATTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
1 TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
** * * * * *
26403220 T-TTATGATTTTGTGTCATCGTGAGTATTAAGTGCAACGAATCTAATCACGGATT-AAGG
1 TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
* * * * *
26403278 ATCTGATGACTTTATGTCATCATGAGTATTAAATGCGATGAATCCAATTACGGATTTAAGAG
1 -TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAG-G
* * * * * *
26403340 TCTGATGACTTTGTGTCTTCGTGAGTATTAAATGAAATGAATCCTATTATGGATTATAGG
1 TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
* *
26403400 TCCGATGA-TTCCGTGTCATCGTGAGTATCAAATGC
1 TCCGATGACTT-TGTGTCATCGTGAGTATTAAATGC
26403435 GAATTGAAAC
Statistics
Matches: 235, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
58 4 0.02
59 49 0.21
60 128 0.54
61 53 0.23
62 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (60 bp):
TCCGATGACTTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGG
Found at i:26403320 original size:119 final size:121
Alignment explanation
Indices: 26403103--26403382 Score: 368
Period size: 119 Copynumber: 2.3 Consensus size: 121
26403093 ATGCAAATCC
* * * *
26403103 GATGACTTTGTGTCATCATAAGTATTAAATGCAATGAATCAAATTACAGATTAAAGGTCCGATGA
1 GATGACTTTGTGTCATCGTGAGTATTAAATGCAACGAATCAAATCACAGATTAAAGGTCCGATGA
* *
26403168 ATTTGTGTCATCGTGAGTATTAAATGCAATGAATCCAATTACGGATTAAAG-GT-T
66 ATTTATGTCATCATGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGAGTCT
* * * * * *
26403222 TATGATTTTGTGTCATCGTGAGTATTAAGTGCAACGAATCTAATCACGGATT-AAGGATCTGATG
1 GATGACTTTGTGTCATCGTGAGTATTAAATGCAACGAATCAAATCACAGATTAAAGG-TCCGATG
* * *
26403286 ACTTTATGTCATCATGAGTATTAAATGCGATGAATCCAATTACGGATTTAAGAGTCT
65 AATTTATGTCATCATGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGAGTCT
* * *
26403343 GATGACTTTGTGTCTTCGTGAGTATTAAATGAAATGAATC
1 GATGACTTTGTGTCATCGTGAGTATTAAATGCAACGAATC
26403383 CTATTATGGA
Statistics
Matches: 137, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
118 4 0.03
119 96 0.70
120 2 0.01
121 35 0.26
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34
Consensus pattern (121 bp):
GATGACTTTGTGTCATCGTGAGTATTAAATGCAACGAATCAAATCACAGATTAAAGGTCCGATGA
ATTTATGTCATCATGAGTATTAAATGCAATGAATCCAATTACGGATTAAAGAGTCT
Found at i:26404128 original size:21 final size:21
Alignment explanation
Indices: 26404099--26404151 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
26404089 GAAGTTTTTA
26404099 GTATCGGTA-AA-AGCACGACTT
1 GTATCGGTAGAAGAG-AC-ACTT
*
26404120 GTTTCGGTAGAAGAGACACTT
1 GTATCGGTAGAAGAGACACTT
26404141 GTATCGGTAGA
1 GTATCGGTAGA
26404152 TTTATCACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 22 0.79
22 4 0.14
23 2 0.07
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (21 bp):
GTATCGGTAGAAGAGACACTT
Found at i:26412564 original size:6 final size:6
Alignment explanation
Indices: 26412533--26412638 Score: 78
Period size: 6 Copynumber: 18.2 Consensus size: 6
26412523 TACTTTTGAT
* * * **
26412533 TTTAAA -TTAAG TTTAAA -TTGAT TTTAAA TTTATT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** *
26412579 TTT--A TCTTAAA TTTAAA TTTAAA TCTATT TTTAAA TTTAAA TTT-AC
1 TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26412625 TTTAAA TTTGAAA T
1 TTTAAA TTT-AAA T
26412639 GGTTTTAAAC
Statistics
Matches: 75, Mismatches: 18, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
4 2 0.03
5 13 0.17
6 54 0.72
7 6 0.08
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:26412564 original size:17 final size:17
Alignment explanation
Indices: 26412539--26412638 Score: 74
Period size: 17 Copynumber: 5.7 Consensus size: 17
26412529 TGATTTTAAA
* *
26412539 TTAAGTTTAAATTGATT
1 TTAAATTTAAATTAATT
** *
26412556 TTAAATTTATTTTTAAAT
1 TTAAATTTA-AATTAATT
** *
26412574 TTAAATTTATCTTAAAT
1 TTAAATTTAAATTAATT
*
26412591 TTAAATTTAAATCTATTT
1 TTAAATTTAAAT-TAATT
* *
26412609 TTAAATTTAAATTTACT
1 TTAAATTTAAATTAATT
26412626 TTAAATTTGAAAT
1 TTAAATTT-AAAT
26412639 GGTTTTAAAC
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
17 35 0.52
18 32 0.48
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (17 bp):
TTAAATTTAAATTAATT
Found at i:26412578 original size:18 final size:18
Alignment explanation
Indices: 26412555--26412638 Score: 89
Period size: 18 Copynumber: 4.4 Consensus size: 18
26412545 TTAAATTGAT
26412555 TTTAAATTTATTTTTAAA
1 TTTAAATTTATTTTTAAA
26412573 TTTAAATTTATCTTAAATTTAAA
1 TTTAAATTTA--TT---TTTAAA
*
26412596 TTTAAATCTATTTTTAAA
1 TTTAAATTTATTTTTAAA
*
26412614 TTTAAATTTA-CTTTAAA
1 TTTAAATTTATTTTTAAA
26412631 TTTGAAAT
1 TTT-AAAT
26412639 GGTTTTAAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
17 9 0.16
18 29 0.51
20 2 0.04
21 2 0.04
23 15 0.26
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (18 bp):
TTTAAATTTATTTTTAAA
Found at i:26412593 original size:23 final size:24
Alignment explanation
Indices: 26412567--26412623 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
26412557 TAAATTTATT
*
26412567 TTTAAATTTAAATTTA-TCTTAAA
1 TTTAAATTTAAATCTATTCTTAAA
*
26412590 TTTAAATTTAAATCTATTTTTAAA
1 TTTAAATTTAAATCTATTCTTAAA
26412614 TTTAAATTTA
1 TTTAAATTTA
26412624 CTTTAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 15 0.48
24 16 0.52
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAAATTTAAATCTATTCTTAAA
Found at i:26414757 original size:28 final size:28
Alignment explanation
Indices: 26414586--26414882 Score: 156
Period size: 29 Copynumber: 10.2 Consensus size: 28
26414576 AATCATATTG
*
26414586 ACCCCCAAACTTCACAAAAATTA-TATTCTT
1 ACCCCCAAA-TTC-CAAAAATTACCATT-TT
* **
26414616 ACCCTCAAACTTTAAAAAATTACCATTTT
1 ACCCCCAAA-TTCCAAAAATTACCATTTT
* *
26414645 ACCCCTAAACTTCC-AAAATTACAATTTT
1 ACCCCCAAA-TTCCAAAAATTACCATTTT
*
26414673 ACCCCTAAACTTCCAAAAATTA-CATTTTT
1 ACCCCCAAA-TTCCAAAAATTACCA-TTTT
** *
26414702 GACCTTCAACTTTCC-AAAATTACCATTTT
1 -ACCCCCAA-ATTCCAAAAATTACCATTTT
*
26414731 ACCCCCAAATGTCTAAAAATTA-CATTTTT
1 ACCCCCAAAT-TCCAAAAATTACCA-TTTT
** * ** *
26414760 GTTCCCGAGTTTTCAAAAATTACCATTTT
1 -ACCCCCAAATTCCAAAAATTACCATTTT
*
26414789 ACCCCCGAATATCCAAAAATTA-CATTTTT
1 ACCCCCAAAT-TCCAAAAATTACCA-TTTT
* * * * *
26414818 ACATCTCGAGTGTCCAAAAATTACCGTTTT
1 AC-CCCCAAAT-TCCAAAAATTACCATTTT
* ** *
26414848 ACCCACGAACCTCTAAAAATTACCATTTT
1 ACCC-CCAAATTCCAAAAATTACCATTTT
26414877 ACCCCC
1 ACCCCC
26414883 GAGCATCCAA
Statistics
Matches: 205, Mismatches: 46, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
27 1 0.00
28 45 0.22
29 103 0.50
30 55 0.27
31 1 0.00
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.33
Consensus pattern (28 bp):
ACCCCCAAATTCCAAAAATTACCATTTT
Found at i:26414866 original size:59 final size:59
Alignment explanation
Indices: 26414655--26414876 Score: 211
Period size: 58 Copynumber: 3.8 Consensus size: 59
26414645 ACCCCTAAAC
* ** * * * *
26414655 TTCC-AAAATTACAATTTTACCCCTAAACT-TCCAAAAATTACATTTTTGACCT-TCAACT
1 TTCCAAAAATTACCATTTTACCCCCGAA-TATCTAAAAATTACATTTTT-ACATCTCGAGT
* * ** *
26414713 TTCC-AAAATTACCATTTTACCCCCAAATGTCTAAAAATTACATTTTT-GTTCCCGAGT
1 TTCCAAAAATTACCATTTTACCCCCGAATATCTAAAAATTACATTTTTACATCTCGAGT
* *
26414770 TTTCAAAAATTACCATTTTACCCCCGAATATCCAAAAATTACATTTTTACATCTCGAGT
1 TTCCAAAAATTACCATTTTACCCCCGAATATCTAAAAATTACATTTTTACATCTCGAGT
* * * **
26414829 GTCCAAAAATTACCGTTTTACCCACGAACCTCTAAAAATTACCATTTT
1 TTCCAAAAATTACCATTTTACCCCCGAATATCTAAAAATTA-CATTTT
26414877 ACCCCCGAGC
Statistics
Matches: 137, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
56 1 0.01
57 7 0.05
58 82 0.60
59 41 0.30
60 6 0.04
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (59 bp):
TTCCAAAAATTACCATTTTACCCCCGAATATCTAAAAATTACATTTTTACATCTCGAGT
Found at i:26414877 original size:59 final size:58
Alignment explanation
Indices: 26414717--26414878 Score: 189
Period size: 59 Copynumber: 2.8 Consensus size: 58
26414707 TCAACTTTCC
* * *** * *
26414717 AAAATTACCATTTTACCCCCAAATGTCTAAAAATTACATTTTTGTTCCCGAGTTTTCA
1 AAAATTACCATTTTACCCCCGAATATCTAAAAATTACATTTTACATCCCGAGTGTCCA
* *
26414775 AAAATTACCATTTTACCCCCGAATATCCAAAAATTACATTTTTACATCTCGAGTGTCCA
1 AAAATTACCATTTTACCCCCGAATATCTAAAAATTACA-TTTTACATCCCGAGTGTCCA
* * **
26414834 AAAATTACCGTTTTACCCACGAACCTCTAAAAATTACCATTTTAC
1 AAAATTACCATTTTACCCCCGAATATCTAAAAATTA-CATTTTAC
26414879 CCCCGAGCAT
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
58 35 0.40
59 51 0.58
60 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCGAATATCTAAAAATTACATTTTACATCCCGAGTGTCCA
Found at i:26419875 original size:13 final size:12
Alignment explanation
Indices: 26419848--26419951 Score: 83
Period size: 13 Copynumber: 8.6 Consensus size: 12
26419838 AGATGCAATG
*
26419848 AAGAAAAAA-TA
1 AAGAAAAAAGAA
26419859 AAGAAAAAAGAA
1 AAGAAAAAAGAA
*
26419871 GAAGAAGAAAGCAA
1 -AAGAAAAAAG-AA
26419885 AAGAAAAAAG-A
1 AAGAAAAAAGAA
**
26419896 AA-AAAGTAGAA
1 AAGAAAAAAGAA
26419907 GAAG-AAAAAGAA
1 -AAGAAAAAAGAA
26419919 AA-AGAAAAAGAAA
1 AAGA-AAAAAG-AA
26419932 AAGAAAAAAAGAA
1 AAG-AAAAAAGAA
26419945 AAGAAAA
1 AAGAAAA
26419952 GAGGAAAAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.07
11 15 0.20
12 19 0.25
13 27 0.36
14 8 0.11
15 1 0.01
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (12 bp):
AAGAAAAAAGAA
Found at i:26419877 original size:6 final size:6
Alignment explanation
Indices: 26419866--26419969 Score: 53
Period size: 6 Copynumber: 18.3 Consensus size: 6
26419856 ATAAAGAAAA
*
26419866 AAGAAG AAGAAG AAAGCAA- AAGAA- AA-AAG AA-AA- AAGTAG AAGAAG
1 AAGAAG AAGAAG -AAG-AAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * * *
26419911 AAAAAG AAAAAG AAAAAG AAAAAG AA-AAA AAGAA- AAGAA- AAGAGG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* *
26419956 AAAAAC AAGAAG AA
1 AAGAAG AAGAAG AA
26419970 AAACAAAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
4 4 0.05
5 22 0.27
6 50 0.62
7 3 0.04
8 2 0.02
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.01
Consensus pattern (6 bp):
AAGAAG
Found at i:26419899 original size:33 final size:31
Alignment explanation
Indices: 26419858--26419987 Score: 107
Period size: 33 Copynumber: 4.3 Consensus size: 31
26419848 AAGAAAAAAT
26419858 AAAGAAAAAAGAAGAAGAAGAAAGCAAAAGAAA
1 AAAGAAAAAAGAAGAAGAAGAAA--AAAAGAAA
*
26419891 AAAGAAAAAAGTAGAAGAAG--AAAAAG-AA
1 AAAGAAAAAAGAAGAAGAAGAAAAAAAGAAA
26419919 AAAG-AAAAAG-A-AA-AAGAAAAAAAG--A
1 AAAGAAAAAAGAAGAAGAAGAAAAAAAGAAA
* * * *
26419944 AAAGAAAAGAGGAAAAACAAGAAGAAAAACAAA
1 AAAGAAAA-AAGAAGAAGAAGAA-AAAAAGAAA
26419977 AATAGAAAAAA
1 AA-AGAAAAAA
26419988 CGGGAAAAAG
Statistics
Matches: 82, Mismatches: 4, Indels: 22
0.76 0.04 0.20
Matches are distributed among these distances:
24 3 0.04
25 7 0.09
26 10 0.12
27 8 0.10
28 7 0.09
29 7 0.09
30 5 0.06
31 6 0.07
33 23 0.28
34 6 0.07
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (31 bp):
AAAGAAAAAAGAAGAAGAAGAAAAAAAGAAA
Found at i:26419939 original size:39 final size:37
Alignment explanation
Indices: 26419864--26419985 Score: 127
Period size: 39 Copynumber: 3.1 Consensus size: 37
26419854 AAATAAAGAA
* *
26419864 AAAAGAAGAAGAAGAAAGCAAAAGAAAAAAGAAAAAAGTAG
1 AAAAGAAAAAGAA-AAAGAAAAAG-AAAAAG-AAAAA-TAG
*
26419905 AAGAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAG
1 AA-AAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAATAG
* * *
26419943 AAAAGAAAAGAGGAAAAACAAGAAGAAAAACAAAAATAG
1 AAAAGAAAA-A-GAAAAAGAAAAAGAAAAAGAAAAATAG
26419982 AAAA
1 AAAA
26419986 AACGGGAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
37 7 0.10
38 5 0.07
39 32 0.45
40 6 0.08
41 11 0.15
42 10 0.14
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (37 bp):
AAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAATAG
Found at i:26419972 original size:13 final size:12
Alignment explanation
Indices: 26419862--26419987 Score: 82
Period size: 12 Copynumber: 10.3 Consensus size: 12
26419852 AAAAATAAAG
26419862 AAAAAAGAAGAA
1 AAAAAAGAAGAA
* *
26419874 GAAGAAAGCA-AA
1 -AAAAAAGAAGAA
*
26419886 AGAAAA-AAGAA
1 AAAAAAGAAGAA
*
26419897 AAAAGTAGAAGAA
1 AAAA-AAGAAGAA
*
26419910 GAAAAAGAA-AA
1 AAAAAAGAAGAA
26419921 AGAAAAAGAA-AA
1 A-AAAAAGAAGAA
26419933 AGAAAAA-AAGAA
1 A-AAAAAGAAGAA
*
26419945 AAGAAAAGAGGAA
1 AA-AAAAGAAGAA
*
26419958 AAACAAGAAGAA
1 AAAAAAGAAGAA
*
26419970 AAACAAAAATAGAA
1 AAA-AAAGA-AGAA
26419984 AAAA
1 AAAA
26419988 CGGGAAAAAG
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
10 1 0.01
11 14 0.16
12 42 0.47
13 25 0.28
14 7 0.08
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAGAA
Found at i:26419978 original size:45 final size:46
Alignment explanation
Indices: 26419863--26419987 Score: 137
Period size: 45 Copynumber: 2.7 Consensus size: 46
26419853 AAAATAAAGA
*
26419863 AAAAAGAAGAAGAAGAAAGC-AAAAGAAAAAAGAAAAAAGTAGAAGAAG
1 AAAAAGAAGAAGAA-AAA-CAAAAAGAAAAAA-AAAAAAGTAAAAGAAG
* * * *
26419911 AAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAGAAAAG-AAAAGAGG
1 AAAAAGAAGAAGAAAAACAAAAAGAAAAAAAAAAAAGTAAAAGAAG
* * *
26419956 AAAAACAAGAAGAAAAACAAAAATAGAAAAAA
1 AAAAAGAAGAAGAAAAACAAAAAGAAAAAAAA
26419988 CGGGAAAAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
45 32 0.49
46 6 0.09
47 14 0.22
48 13 0.20
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (46 bp):
AAAAAGAAGAAGAAAAACAAAAAGAAAAAAAAAAAAGTAAAAGAAG
Found at i:26419987 original size:60 final size:62
Alignment explanation
Indices: 26419847--26420001 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 62
26419837 CAGATGCAAT
* * * **
26419847 GAAGAAAAA-ATAAAGAAAAAAGAAGAAG-AAGAAAGCAAAAGAAAAAAGAAAAAAGTAGAA
1 GAAGAAAAAGAAAAAGAAAAAAGAAAAAGAAAAAAAGCAAAAGAAAAAAGAAAAAACAAGAA
* *
26419907 GAAGAAAAAGAAAAAG-AAAAAGAAAAAGAAAAAAAG-AAAAGAAAAGAGGAAAAACAAGAA
1 GAAGAAAAAGAAAAAGAAAAAAGAAAAAGAAAAAAAGCAAAAGAAAAAAGAAAAAACAAGAA
*
26419967 GAA-AAACAA-AAATAGAAAAAACGGGAAAAAGAAAA
1 GAAGAAA-AAGAAAAAGAAAAAA---GAAAAAGAAAA
26420002 GGACAAGTAG
Statistics
Matches: 80, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
59 8 0.10
60 50 0.62
61 11 0.14
63 11 0.14
ACGTcount: A:0.76, C:0.03, G:0.19, T:0.02
Consensus pattern (62 bp):
GAAGAAAAAGAAAAAGAAAAAAGAAAAAGAAAAAAAGCAAAAGAAAAAAGAAAAAACAAGAA
Found at i:26421036 original size:49 final size:48
Alignment explanation
Indices: 26420950--26421518 Score: 250
Period size: 49 Copynumber: 11.5 Consensus size: 48
26420940 TGGAAATTTG
* * * * *
26420950 AAGGGAAAGATTTAAGCCACAATGGTGAATCTAGTACCACAAAGATTTA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACAAAGA-TTA
* * * ** *
26420999 AAGGAAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTTAGAAGCA-TG
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACA-AAG-ATTA
* * * * ** *
26421048 AAGGGAAAGATTTAAGCCGCAACGGTGAATCTAGTGCCATGAAGATATG
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACAAAGAT-TA
* * * * * *
26421097 AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCATGAAA-ATTA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCA-CAAAGATTA
* * * * * *
26421145 AAGGGAAAGGTTTAAGTCACAACGGTGAACCTTGTACCTCAGAAGCATGAAGGGA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACA-AAG-AT-----TA
* * * * **
26421200 AATGGAAAGGTTTAAGCCGCAACAGCGAATCTAGTACCACGAAGACACA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACAAAGA-TTA
* * * * * * * * *
26421249 AATGGAAAGGTTTAAGTCGTAATGACGAACCTTA-TACCTCAGAGACATG
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACC-TAGTACCACAAAGA-TTA
* * ** * **
26421298 AAGGAAAAGATTTAAGCCGCAACGGCGAATATAGTACCACGAAGACACAA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCAC-AA-AGATTA
* * * ** *
26421348 AAGGGAAAGGTTTAAGTCGTAATGGCGAACCTTA-TACCTTAGAAGCATGA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACC-TAGTACCACA-AAG-ATTA
* * * **
26421398 AAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACAAAGA-TTA
* * * * *
26421447 AAGGGAAAGGTTTAAGTCGCAATGGAGAACCTTA-TACCTCAGAAGCATGA
1 AAGGGAAAGGTTTAAGCCGCAACGGCGAACC-TAGTACCACA-AAG-ATTA
**
26421497 AA-GGAAAAATTTAAGCCGCAAC
1 AAGGGAAAGGTTTAAGCCGCAAC
26421519 AACAAATTTA
Statistics
Matches: 386, Mismatches: 108, Indels: 52
0.71 0.20 0.10
Matches are distributed among these distances:
47 2 0.01
48 40 0.10
49 222 0.58
50 79 0.20
51 6 0.02
53 1 0.00
54 3 0.01
55 33 0.09
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (48 bp):
AAGGGAAAGGTTTAAGCCGCAACGGCGAACCTAGTACCACAAAGATTA
Found at i:26421271 original size:152 final size:147
Alignment explanation
Indices: 26420950--26421534 Score: 473
Period size: 149 Copynumber: 3.9 Consensus size: 147
26420940 TGGAAATTTG
**
26420950 AAGGGAAAGATTTAAGCCACAATGGTGAATCTAGTACCACAAAGATTTAAAGGAAAAGGTTTAAG
1 AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCACAAAGATTTAAAGGAAAAGGTTTAAG
* * * *
26421015 TCGCAACGGCGAACCTTGTACCTTAGAAGCATGAAGGGAAAGATTTAAGCCGCAACGGTGAATCT
66 TCACAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCT
* * * **
26421080 AGTGCCATGAAGATATG
131 AGTACCACGAAGACACA
* *
26421097 AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCATGAAA-A-TTAAAGGGAAAGGTTTAA
1 AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCA-CAAAGATTTAAAGGAAAAGGTTTAA
*
26421160 GTCACAACGGTGAACCTTGTACCTCAGAAGCATGAAGGGAAATGGAAAGGTTTAAGCCGCAACAG
65 GTCACAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAA--G--A--TTTAAGCCGCAACAG
26421225 CGAATCTAGTACCACGAAGACACA
124 CGAATCTAGTACCACGAAGACACA
* * * ** * * * ** * *
26421249 AATGGAAAGGTTTAAGTCGTAATGACGAACCTTA-TACCTCAGAGACATGAAGGAAAAGATTTAA
1 AAGGGAAAGATTTAAGCCGTAATGGTGAATC-TAGTACCACAAAGATTTAAAGGAAAAGGTTTAA
* * ** * * ** * * * **
26421313 GCCGCAACGGCGAATATAGTACCAC-GAAGACACAAAAGGGAAAGGTTTAAGTCGTAATGGCGAA
65 GTCACAACGGCGAACCTTGTACCTCAGAAG-CA-TGAAGGGAAAGATTTAAGCCGCAACAGCGAA
* *
26421377 CCTTA-TACCTTA-GAAG-CATGA
128 TC-TAGTACC--ACGAAGACA-CA
* * * * *** *
26421398 AAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTTTAAG
1 AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCACAAAGATTTAAAGGAAAAGGTTTAAG
* * * * * * * * *
26421463 TCGCAATGGAGAACCTTATACCTCAGAAGCATGAAAGGAAAAATTTAAGCCGCAACAACAAATTT
66 TCACAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCT
26421528 AGTACCA
131 AGTACCA
26421535 TGCGGATTGA
Statistics
Matches: 341, Mismatches: 78, Indels: 39
0.74 0.17 0.09
Matches are distributed among these distances:
146 57 0.17
147 40 0.12
148 52 0.15
149 73 0.21
150 6 0.02
151 2 0.01
152 67 0.20
153 36 0.11
154 8 0.02
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (147 bp):
AAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCACAAAGATTTAAAGGAAAAGGTTTAAG
TCACAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCT
AGTACCACGAAGACACA
Found at i:26421397 original size:99 final size:98
Alignment explanation
Indices: 26421094--26421518 Score: 543
Period size: 99 Copynumber: 4.3 Consensus size: 98
26421084 CCATGAAGAT
* * * * * *
26421094 ATGAAGGGAAAGATTTAAGCCGTAATGGTGAATCTAGTACCATGAA-A-ATTAAAGGGAAAGGTT
1 ATGAAGGAAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACA-CAAAGGGAAAGGTT
* * * *
26421157 TAAGTCACAACGGTGAACCTTGTACCTCAGAAGC
65 TAAGTCGCAATGGCGAACCTTATACCTCAGAAGC
* * *
26421191 ATGAAGGGAAATGGAAAGGTTTAAGCCGCAACAGCGAATCTAGTACCACGAAGACACAAATGGAA
1 ATGAA-GG--A---AAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAA
* *
26421256 AGGTTTAAGTCGTAATGACGAACCTTATACCTCAG-AGAC
60 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAG-C
*
26421295 ATGAAGGAAAAGATTTAAGCCGCAACGGCGAATATAGTACCACGAAGACACAAAAGGGAAAGGTT
1 ATGAAGGAAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACAC-AAAGGGAAAGGTT
* *
26421360 TAAGTCGTAATGGCGAACCTTATACCTTAGAAGC
65 TAAGTCGCAATGGCGAACCTTATACCTCAGAAGC
*
26421394 ATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTT
1 ATG-AAGGAAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTT
*
26421459 TAAGTCGCAATGGAGAACCTTATACCTCAGAAGC
65 TAAGTCGCAATGGCGAACCTTATACCTCAGAAGC
26421493 ATGAAAGGAAAA-ATTTAAGCCGCAAC
1 ATG-AAGGAAAAGATTTAAGCCGCAAC
26421519 AACAAATTTA
Statistics
Matches: 289, Mismatches: 27, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
97 5 0.02
98 56 0.19
99 99 0.34
100 48 0.17
101 1 0.00
103 36 0.12
104 43 0.15
105 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (98 bp):
ATGAAGGAAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGACACAAAGGGAAAGGTTT
AAGTCGCAATGGCGAACCTTATACCTCAGAAGC
Found at i:26421965 original size:78 final size:77
Alignment explanation
Indices: 26421917--26422337 Score: 314
Period size: 78 Copynumber: 5.4 Consensus size: 77
26421907 CAATTGTTCG
*
26421917 ATCTCTTACCCTAAGCCT-GGCGCAGATTGCAGTCGTTCGACCTCTTACCCCGAGCTTGGGGCAG
1 ATCTCTTACCCCAAGCCTAGG-GCAGATTGCAGTCGTTCGACCTCTTA-CCCGAGCTTGGGGCAG
*
26421981 ATCACCATCAACTA
64 ATCACAATCAACTA
* * *
26421995 ATCTCTTACCCCGAGCTTAGGGCAGATTGCAGTCGTTCGATCTCTTACCCGAGCTTGGGGCAGAT
1 ATCTCTTACCCCAAGCCTAGGGCAGATTGCAGTCGTTCGACCTCTTACCCGAGCTTGGGGCAGAT
* *
26422060 CACCATTAA-TCA
66 CACAATCAACT-A
* * * * * ** * * *
26422072 ATCTCTTACCCCGAGCCTGGGGTAAATTACAACCATTCGATCTCTTACCCTGAGCTTGGGGCATA
1 ATCTCTTACCCCAAGCCTAGGGCAGATTGCAGTCGTTCGACCTCTTACCC-GAGCTTGGGGCAGA
* *
26422137 TCACCATCAACCA
65 TCACAATCAACTA
* * * * * * * * * * * *
26422150 ATCTCTTAGCTCGAGCTTGGGGCAGATTGCGGCCATTCGATCTCTTACCCCAAGCCT-GTGCAGA
1 ATCTCTTACCCCAAGCCTAGGGCAGATTGCAGTCGTTCGACCTCTTA-CCCGAGCTTGGGGCAGA
* *
26422214 TCATC-ATCAGCAA
65 TCA-CAATCAACTA
* * ** * * *
26422227 ATCTCTTACCTCGAGCCTAGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCATGGGGCAGA
1 ATCTCTTACCCCAAGCCTAGGGCAGATTGCAGTCGTTCGACCTCTTA-CCCGAGCTTGGGGCAGA
* *
26422292 TCACTATCAGCCT-
65 TCACAATCA-ACTA
* * *
26422305 ATCTCTTACCTCGAG-ATAGGGGCAGATTGCAGT
1 ATCTCTTACCCCAAGCCTA-GGGCAGATTGCAGT
26422338 TATCCAAAAA
Statistics
Matches: 290, Mismatches: 43, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
76 1 0.00
77 136 0.47
78 147 0.51
79 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (77 bp):
ATCTCTTACCCCAAGCCTAGGGCAGATTGCAGTCGTTCGACCTCTTACCCGAGCTTGGGGCAGAT
CACAATCAACTA
Found at i:26422111 original size:155 final size:155
Alignment explanation
Indices: 26421952--26422337 Score: 483
Period size: 155 Copynumber: 2.5 Consensus size: 155
26421942 ATTGCAGTCG
* *
26421952 TTCGACCTCTTACCCCGAGCTTGGGGCAGATCACCATCAACTAATCTCTTACCCCGAGCTTAGGG
1 TTCGATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAACTAATCTCTTACCTCGAGCTTAGGG
* * * *
26422017 CAGATTGCAGTCGTTCGATCTCTTA-CCCGAGCTTGGGGCAGATCACCATTAATC-AATCTCTTA
66 CAGATTGCAGTCATTCGATCTCTTACCCCAAGCCT-GGGCAGATCACCA-TAAGCAAATCTCTTA
* *
26422080 CCCCGAGCCTGGGGTAAATTACAACCA
129 CCCCGAGCCTAGGGCAAATTACAACCA
* * * * *
26422107 TTCGATCTCTTACCCTGAGCTTGGGGCATATCACCATCAACCAATCTCTTAGCTCGAGCTTGGGG
1 TTCGATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAACTAATCTCTTACCTCGAGCTTAGGG
* * * * *
26422172 CAGATTGCGGCCATTCGATCTCTTACCCCAAGCCTGTGCAGATCATCATCAGCAAATCTCTTACC
66 CAGATTGCAGTCATTCGATCTCTTACCCCAAGCCTGGGCAGATCACCATAAGCAAATCTCTTACC
* * *
26422237 TCGAGCCTAGGGCAGATTGCAACCA
131 CCGAGCCTAGGGCAAATTACAACCA
* * * *
26422262 TTCGATCTCTTACCCCGAGCATGGGGCAGATCACTATCAGCCT-ATCTCTTACCTCGAG-ATAGG
1 TTCGATCTCTTACCCCGAGCTTGGGGCAGATCACCATCA-ACTAATCTCTTACCTCGAGCTTA-G
26422325 GGCAGATTGCAGT
64 GGCAGATTGCAGT
26422338 TATCCAAAAA
Statistics
Matches: 195, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
154 4 0.02
155 183 0.94
156 8 0.04
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (155 bp):
TTCGATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAACTAATCTCTTACCTCGAGCTTAGGG
CAGATTGCAGTCATTCGATCTCTTACCCCAAGCCTGGGCAGATCACCATAAGCAAATCTCTTACC
CCGAGCCTAGGGCAAATTACAACCA
Found at i:26422309 original size:39 final size:39
Alignment explanation
Indices: 26421761--26422331 Score: 260
Period size: 39 Copynumber: 14.7 Consensus size: 39
26421751 GAAAACCCCA
* * * * * *
26421761 ATCTCTTACCCCGAGCCTGAGGCAGATCACTATAAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * * ** * * *
26421800 ATCTCTTACCCTGAGCTTGAGACAAATTGCAACCATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * * ** *
26421839 ATCTTTTACCTCGAACTTGGGGTAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * ** * *
26421878 ATCTATTACCCTGAGCTTGAGGCAGATTGCAAT-TGTTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAG-TCG
** * * **
26421917 ATCTCTTACCCTAAGCCTGGCGCAGAT-TGCAGTC-GTTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCA-TCAG-TCG
* * *
26421956 ACCTCTTACCCCGAGCTTGGGGCAGATCACCATCA-ACTA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTC-G
* **
26421995 ATCTCTTACCCCGAGCTTAGGGCAGAT-TGCAGTC-GTTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCA-TCAG-TCG
* * *
26422034 ATCTCTTA-CCCGAGCTTGGGGCAGATCACCATTAATCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * * * * *
26422072 ATCTCTTACCCCGAGCCTGGGGTAAATTACAACCATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * ** *
26422111 ATCTCTTACCCTGAGCTTGGGGCATATCACCATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * ** *** *
26422150 ATCTCTTAGCTCGAGCTTGGGGCAGATTGCGGCCATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * * *
26422189 ATCTCTTACCCCAAGCCT-GTGCAGATCATCATCAG-CAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTC-G
* * * ** * * *
26422227 ATCTCTTACCTCGAGCCTAGGGCAGATTGCAACCATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * * *
26422266 ATCTCTTACCCCGAGCATGGGGCAGATCACTATCAGCCT
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
* * *
26422305 ATCTCTTACCTCGAGATAGGGGCAGAT
1 ATCTCTTACCCCGAGCTTGGGGCAGAT
26422332 TGCAGTTATC
Statistics
Matches: 380, Mismatches: 137, Indels: 30
0.69 0.25 0.05
Matches are distributed among these distances:
37 1 0.00
38 57 0.15
39 318 0.84
40 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGTCG
Found at i:26422920 original size:6 final size:6
Alignment explanation
Indices: 26422911--26422960 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
26422901 TTAAATTGGT
* **
26422911 TTTAAA TTT--A TCTTAAA TTTAAA TTTAAA TCTACT TTTAAA TTTAAA
1 TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26422958 TTT
1 TTT
26422961 GCTTTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
6 29 0.83
7 2 0.06
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:26422920 original size:17 final size:17
Alignment explanation
Indices: 26422895--26422995 Score: 69
Period size: 17 Copynumber: 5.8 Consensus size: 17
26422885 TGATTTTAAA
* *
26422895 TTAAGTTTAAATTGGTT
1 TTAAATTTAAATTAGTT
** **
26422912 TTAAATTTATCTTAAAT
1 TTAAATTTAAATTAGTT
*
26422929 TTAAATTTAAATCTACTT
1 TTAAATTTAAAT-TAGTT
* *
26422947 TTAAATTTAAATTTGCT
1 TTAAATTTAAATTAGTT
*
26422964 TTAAATTTGAAA-TGGTT
1 TTAAATTT-AAATTAGTT
*
26422981 TTAAACTTAATATTA
1 TTAAATTTAA-ATTA
26422996 AATTAAAAAG
Statistics
Matches: 63, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
16 2 0.03
17 42 0.67
18 19 0.30
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (17 bp):
TTAAATTTAAATTAGTT
Found at i:26422951 original size:18 final size:17
Alignment explanation
Indices: 26422928--26422976 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
26422918 TTATCTTAAA
26422928 TTTAAATTTAAATCTAC
1 TTTAAATTTAAATCTAC
* *
26422945 TTTTAAATTTAAATTTGC
1 -TTTAAATTTAAATCTAC
26422963 TTTAAATTTGAAAT
1 TTTAAATTT-AAAT
26422977 GGTTTTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (17 bp):
TTTAAATTTAAATCTAC
Found at i:26424915 original size:30 final size:29
Alignment explanation
Indices: 26424879--26425015 Score: 111
Period size: 29 Copynumber: 4.7 Consensus size: 29
26424869 TCCAGAAGAT
26424879 CCCTAAACTATCCAAAAATTATATTTTGAC
1 CCCTAAACT-TCCAAAAATTATATTTTGAC
* *
26424909 CCCTAAACCTTCC-AAAATTACATTTTGGC
1 CCCTAAA-CTTCCAAAAATTATATTTTGAC
*
26424938 CCCTAAACTTCATAAAAATTATATTCTT-A-
1 CCCTAAACTTC-CAAAAATTATATT-TTGAC
* * * ** *
26424967 CCCTCAAACTTCTACAATTTCCATTTT-AA
1 CCCT-AAACTTCCAAAAATTATATTTTGAC
26424996 CCCTAAACTTTCCAAAAATT
1 CCCTAAAC-TTCCAAAAATT
26425016 TCCATTTTAC
Statistics
Matches: 88, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
28 11 0.12
29 46 0.52
30 27 0.31
31 4 0.05
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.34
Consensus pattern (29 bp):
CCCTAAACTTCCAAAAATTATATTTTGAC
Found at i:26424954 original size:29 final size:28
Alignment explanation
Indices: 26424879--26425082 Score: 96
Period size: 29 Copynumber: 6.9 Consensus size: 28
26424869 TCCAGAAGAT
*
26424879 CCCTAAACTATCCAAAAATTATATTTTGAC
1 CCCTAAACT-T-CAAAAATTACATTTTGAC
* *
26424909 CCCTAAACCTTCCAAAATTACATTTTGGC
1 CCCTAAA-CTTCAAAAATTACATTTTGAC
*
26424938 CCCTAAACTTCATAAAAATTATATTCTT-A-
1 CCCTAAACTTC--AAAAATTACATT-TTGAC
* * * *
26424967 CCCTCAAACTTCTACAATTTCCATTTT-AA
1 CCCT-AAACTTC-AAAAATTACATTTTGAC
*
26424996 CCCTAAACTTTCCAAAAATTTCCATTTT-A-
1 CCCTAAAC-TT-CAAAAA-TTACATTTTGAC
* *
26425025 CCCTCGAACTTCTAAAAATTGCATTTTTGA-
1 CCCT-AAACTTC-AAAAATTACA-TTTTGAC
* *
26425055 CCTTGAACTTTTCAAAAATTATCATTTT
1 CCCTAAAC--TTCAAAAATTA-CATTTT
26425083 ATACCCGGAG
Statistics
Matches: 142, Mismatches: 16, Indels: 32
0.75 0.08 0.17
Matches are distributed among these distances:
28 16 0.11
29 63 0.44
30 54 0.38
31 9 0.06
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.37
Consensus pattern (28 bp):
CCCTAAACTTCAAAAATTACATTTTGAC
Found at i:26425017 original size:30 final size:30
Alignment explanation
Indices: 26424982--26425141 Score: 111
Period size: 29 Copynumber: 5.4 Consensus size: 30
26424972 AAACTTCTAC
*
26424982 AATTTCCATTTTAACCCTAAACTTTCCAAA
1 AATTTCCATTTTAACCCTGAACTTTCCAAA
*
26425012 AATTTCCATTTT-ACCCTCGAAC-TTCTAAA
1 AATTTCCATTTTAACCCT-GAACTTTCCAAA
* * * *
26425041 AA-TTGCATTTTTGACCTTGAACTTTTCAAA
1 AATTTCCA-TTTTAACCCTGAACTTTCCAAA
* *
26425071 AATTAT-CATTTTATACCC-GGA-GTTCCAAA
1 AATT-TCCATTTTA-ACCCTGAACTTTCCAAA
* * *
26425100 AATTT-CATTTTTGACCTTGAATTTTCC-AA
1 AATTTCCA-TTTTAACCCTGAACTTTCCAAA
*
26425129 AATTACCATTTTA
1 AATTTCCATTTTA
26425142 CCCCCTGATG
Statistics
Matches: 102, Mismatches: 17, Indels: 23
0.72 0.12 0.16
Matches are distributed among these distances:
28 10 0.10
29 47 0.46
30 38 0.37
31 6 0.06
32 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.41
Consensus pattern (30 bp):
AATTTCCATTTTAACCCTGAACTTTCCAAA
Found at i:26425026 original size:58 final size:59
Alignment explanation
Indices: 26424879--26425144 Score: 172
Period size: 59 Copynumber: 4.5 Consensus size: 59
26424869 TCCAGAAGAT
* * * ***
26424879 CCCTAAACTATCCAAAAATTAT-ATTTTGACCC-CTAAACCTTC-CAAAATTACATTTTGGC
1 CCCTAAACTTTCCAAAAATTATCATTTT-ACCCTC-AAA-CTTCTAAAAATTCCATTTTTAA
* * *
26424938 CCCTAAAC-TTCATAAAAATTAT-ATTCTTACCCTCAAACTTCTACAATTTCCA-TTTTAA
1 CCCTAAACTTTC-CAAAAATTATCATT-TTACCCTCAAACTTCTAAAAATTCCATTTTTAA
* * *
26424996 CCCTAAACTTTCCAAAAATT-TCCATTTTACCCTCGAACTTCTAAAAATTGCATTTTTGA
1 CCCTAAACTTTCCAAAAATTAT-CATTTTACCCTCAAACTTCTAAAAATTCCATTTTTAA
* * * * ** * * * *
26425055 CCTTGAACTTTTCAAAAATTATCATTTTATACC-CGGAGTTCCAAAAATTTCATTTTTGA
1 CCCTAAACTTTCCAAAAATTATCATTTTA-CCCTCAAACTTCTAAAAATTCCATTTTTAA
* * * *
26425114 CCTTGAATTTTCC-AAAATTACCATTTTACCC
1 CCCTAAACTTTCCAAAAATTATCATTTTACCC
26425145 CCTGATGTCC
Statistics
Matches: 170, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
57 3 0.02
58 60 0.35
59 101 0.59
60 6 0.04
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (59 bp):
CCCTAAACTTTCCAAAAATTATCATTTTACCCTCAAACTTCTAAAAATTCCATTTTTAA
Found at i:26425156 original size:58 final size:57
Alignment explanation
Indices: 26425004--26425228 Score: 213
Period size: 58 Copynumber: 3.8 Consensus size: 57
26424994 AACCCTAAAC
* * * *
26425004 TTTCCAAAAATTTCCATTTTACCCTCGAACT-TCTAAAAATTGCATTTTTGACCTTGAACT
1 TTTCC-AAAATTACCATTTTACCCCCG-A-TGTCCAAAAATTACATTTTTGACCTTGAA-T
* * * * *
26425064 TTTCAAAAATTATCATTTTATACCCGGA-GTTCCAAAAATTTCATTTTTGACCTTGAAT
1 TTTCCAAAATTACCATTTTA-CCCCCGATG-TCCAAAAATTACATTTTTGACCTTGAAT
* * *
26425122 TTTCCAAAATTACCATTTTACCCCCTGATGTCCAAAAATTACATTTTT-ATTCTCGAGT
1 TTTCCAAAATTACCATTTTACCCCC-GATGTCCAAAAATTACATTTTTGA-CCTTGAAT
* * *
26425180 TTTCCAAAATCACCATTTTACCCTCAGATATCCAAAAATTACATTTTTG
1 TTTCCAAAATTACCATTTTACCC-CCGATGTCCAAAAATTACATTTTTG
26425229 CCCCCGAGCA
Statistics
Matches: 138, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
57 4 0.03
58 86 0.62
59 41 0.30
60 7 0.05
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.40
Consensus pattern (57 bp):
TTTCCAAAATTACCATTTTACCCCCGATGTCCAAAAATTACATTTTTGACCTTGAAT
Found at i:26425227 original size:29 final size:30
Alignment explanation
Indices: 26424982--26425227 Score: 99
Period size: 29 Copynumber: 8.4 Consensus size: 30
26424972 AAACTTCTAC
* * *
26424982 AATTTCCATTTTAACCCT-AAACTTTCCAAA
1 AATTACCATTTTTACCCTCAGA-TTTCCAAA
* * *
26425012 AATTTCCA-TTTTACCCTC-GAACTTCTAAA
1 AATTACCATTTTTACCCTCAG-ATTTCCAAA
* * * *
26425041 AATT-GCATTTTTGACCTTGA-ACTTTTCAAA
1 AATTACCATTTTT-ACCCTCAGA-TTTCCAAA
* * *
26425071 AATTATCATTTTATA-CC-CGGAGTTCCAAA
1 AATTACCATTTT-TACCCTCAGATTTCCAAA
* * *
26425100 AATT-TCATTTTTGACCTTGA-ATTTTCC-AA
1 AATTACCATTTTT-ACCCTCAGA-TTTCCAAA
* * *
26425129 AATTACCA-TTTTACCCCCTGATGTCCAAA
1 AATTACCATTTTTACCCTCAGATTTCCAAA
** *
26425158 AATTA-CATTTTTATTCTCGAGTTTTCC-AA
1 AATTACCATTTTTACCCTC-AGATTTCCAAA
* *
26425187 AATCACCA-TTTTACCCTCAGATATCCAAA
1 AATTACCATTTTTACCCTCAGATTTCCAAA
26425216 AATTA-CATTTTT
1 AATTACCATTTTT
26425228 GCCCCCGAGC
Statistics
Matches: 157, Mismatches: 38, Indels: 43
0.66 0.16 0.18
Matches are distributed among these distances:
27 1 0.01
28 27 0.17
29 84 0.54
30 37 0.24
31 7 0.04
32 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (30 bp):
AATTACCATTTTTACCCTCAGATTTCCAAA
Found at i:26425248 original size:58 final size:58
Alignment explanation
Indices: 26425124--26425245 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
26425114 CCTTGAATTT
* * * ** * **
26425124 TCCAAAATTACCATTTTACCCCCTGATGTCCAAAAATTACATTTTTATTCTCGAGTTT
1 TCCAAAATCACCATTTTACCCCCAGATATCCAAAAATTACATTTTTACCCCCGAGTCA
* *
26425182 TCCAAAATCACCATTTTACCCTCAGATATCCAAAAATTACATTTTTGCCCCCGAG-CA
1 TCCAAAATCACCATTTTACCCCCAGATATCCAAAAATTACATTTTTACCCCCGAGTCA
26425239 TCCAAAA
1 TCCAAAA
26425246 ATCGTATTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 7 0.13
58 47 0.87
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (58 bp):
TCCAAAATCACCATTTTACCCCCAGATATCCAAAAATTACATTTTTACCCCCGAGTCA
Found at i:26427195 original size:23 final size:23
Alignment explanation
Indices: 26427151--26427196 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26427141 ATTAGCAATT
**
26427151 AATAAATATATTAATATCTAATA
1 AATAAATATAAAAATATCTAATA
26427174 AATAAATATAAAATATAT-TAATA
1 AATAAATATAAAA-ATATCTAATA
26427197 TATATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AATAAATATAAAAATATCTAATA
Found at i:26434139 original size:30 final size:29
Alignment explanation
Indices: 26434105--26434173 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
26434095 ATTTTCAAGG
* *
26434105 AATTTGAGGTAAAAATTGAAATTTTTGGAA
1 AATTTGAGGTAAAAA-TCAAACTTTTGGAA
* * *
26434135 AATTTGTGATTAAAATCAAACTTTTGGAA
1 AATTTGAGGTAAAAATCAAACTTTTGGAA
26434164 AATTTGAGGT
1 AATTTGAGGT
26434174 CGAAAATGTG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.38
Consensus pattern (29 bp):
AATTTGAGGTAAAAATCAAACTTTTGGAA
Found at i:26434366 original size:29 final size:28
Alignment explanation
Indices: 26434156--26434366 Score: 147
Period size: 29 Copynumber: 7.1 Consensus size: 28
26434146 AAAATCAAAC
* * *
26434156 TTTTGGAAAATTTGAGGTCGAAAATGTGAC
1 TTTTGG-AAGTTTGGGGTC-AAAATGTGAT
* *
26434186 TTTTGGAAATTTGGGGGCAAAATAGTGAT
1 TTTTGGAAGTTTGGGGTCAAAAT-GTGAT
* * *
26434215 TTTTGGATGTTCAGGGG-CAAAATG-GTAA
1 TTTTGGAAGTT-TGGGGTCAAAATGTG-AT
* *
26434243 TTTTGGATGAGTTTGGTGTCAAAATGTAAT
1 TTTTGGA--AGTTTGGGGTCAAAATGTGAT
*
26434273 TTTGGGAAAGTTTGGGAGTCAAAAATGTGAT
1 TTTTGG-AAGTTTGGG-GTC-AAAATGTGAT
* * * *
26434304 TTTTACGAATTTTAGGGATCAAAATATGAT
1 TTTT-GGAAGTTT-GGGGTCAAAATGTGAT
*
26434334 TTTTGGAAGTTTAGGGGTCAAAATGTAAT
1 TTTTGGAAGTTT-GGGGTCAAAATGTGAT
26434363 TTTT
1 TTTT
26434367 AGACAAAATA
Statistics
Matches: 144, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
27 1 0.01
28 14 0.10
29 63 0.44
30 42 0.29
31 20 0.14
32 4 0.03
ACGTcount: A:0.31, C:0.05, G:0.27, T:0.37
Consensus pattern (28 bp):
TTTTGGAAGTTTGGGGTCAAAATGTGAT
Found at i:26435408 original size:13 final size:14
Alignment explanation
Indices: 26435357--26435408 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 14
26435347 CTTTCTTTCT
26435357 TTATTTATT-AATA
1 TTATTTATTAAATA
* **
26435370 TTATTTAATATTTA
1 TTATTTATTAAATA
*
26435384 TTATTCATTAAAT-
1 TTATTTATTAAATA
26435397 TTATTTATTAAA
1 TTATTTATTAAA
26435409 ACGTTTAGTA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATTTATTAAATA
Found at i:26435864 original size:21 final size:22
Alignment explanation
Indices: 26435818--26435878 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
26435808 TGATCTAAGG
*
26435818 AAAAATAAAAGAAACA-A-AATT
1 AAAAATAAAAGAAA-ATAGAACT
26435839 AAAAATAAAAGAAAATAGAACT
1 AAAAATAAAAGAAAATAGAACT
*
26435861 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
26435879 GAAAGTCGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 1 0.03
21 15 0.43
22 18 0.51
23 1 0.03
ACGTcount: A:0.74, C:0.03, G:0.10, T:0.13
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAACT
Found at i:26435871 original size:15 final size:16
Alignment explanation
Indices: 26435844--26435873 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26435834 AAATTAAAAA
26435844 TAAAAGAAAATAGAAC
1 TAAAAGAAAATAGAAC
26435860 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
26435874 AATAGGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (16 bp):
TAAAAGAAAATAGAAC
Found at i:26436703 original size:19 final size:19
Alignment explanation
Indices: 26436679--26436721 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26436669 AAACATAAAT
26436679 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
26436698 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
26436717 TAAAT
1 TAAAT
26436722 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:26437471 original size:105 final size:102
Alignment explanation
Indices: 26437283--26437475 Score: 239
Period size: 105 Copynumber: 1.9 Consensus size: 102
26437273 TTATTTTGTG
*
26437283 AATTTTTTCCTTTTTTTTCTTTAAGAATACATTGGACCTTTTGACGCGAAATAAAATAACACTCA
1 AATTTTTTCCTTTTTTTTCTTTAAGAATACATTAGACCTTTTGACGCGAAATAAAATAACACTCA
*
26437348 AGCACTCCATCCCAGTTACTCAGCTCAACATGCTCTC
66 AGCACTCCACCCCAGTTACTCAGCTCAACATGCTCTC
* * * * *
26437385 AATTTTTTCTTCTTTTTTTTTTTTGTAGAATGCATTAG-CCTTTTTGACGCGAAGTGAAATGATA
1 AATTTTTTC--CTTTTTTTTCTTT-AAGAATACATTAGACC-TTTTGACGCGAAATAAAAT-A-A
*
26437449 -AC-CAAGCACTCCACCCCGGTTACTCAG
60 CACTCAAGCACTCCACCCCAGTTACTCAG
26437476 TCTAACACAT
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
102 9 0.12
104 14 0.18
105 50 0.65
106 3 0.04
107 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.37
Consensus pattern (102 bp):
AATTTTTTCCTTTTTTTTCTTTAAGAATACATTAGACCTTTTGACGCGAAATAAAATAACACTCA
AGCACTCCACCCCAGTTACTCAGCTCAACATGCTCTC
Found at i:26437494 original size:105 final size:104
Alignment explanation
Indices: 26437282--26437516 Score: 234
Period size: 105 Copynumber: 2.2 Consensus size: 104
26437272 TTTATTTTGT
* *
26437282 GAATTTTTTC--CTTTTTTTTCTTTAAGAATACATTGGACCTTTTGACGCGAAATAAAATAACAC
1 GAATTTTTTCTTCTTTTTTTTTTTTAAGAATACATTAGACCTTTTGACGCGAAATAAAATAACAC
*
26437345 TCAAGCACTCCATCCCAGTTACTCAGCTCAACATGCTCTC
66 TCAAGCACTCCACCCCAGTTACTCAGCTCAACA-GCTCTC
* * * *
26437385 -AATTTTTTCTTCTTTTTTTTTTTTGTAGAATGCATTAG-CCTTTTTGACGCGAAGTGAAATGAT
1 GAATTTTTTCTTCTTTTTTTTTTTT-AAGAATACATTAGACC-TTTTGACGCGAAATAAAAT-A-
* *
26437448 A-AC-CAAGCACTCCACCCCGGTTACTCAG-TCTAACA-CATTTC
62 ACACTCAAGCACTCCACCCCAGTTACTCAGCTC-AACAGC-TCTC
* *
26437489 GAATTTATTTATTATTTTCTTTTTTTTA
1 GAATTT-TTTCTTCTTTT-TTTTTTTTA
26437517 TTCGGGTTAG
Statistics
Matches: 109, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
102 9 0.08
103 1 0.01
104 19 0.17
105 59 0.54
106 12 0.11
107 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.41
Consensus pattern (104 bp):
GAATTTTTTCTTCTTTTTTTTTTTTAAGAATACATTAGACCTTTTGACGCGAAATAAAATAACAC
TCAAGCACTCCACCCCAGTTACTCAGCTCAACAGCTCTC
Found at i:26438171 original size:4 final size:4
Alignment explanation
Indices: 26438162--26438221 Score: 52
Period size: 4 Copynumber: 14.5 Consensus size: 4
26438152 TCCTGGACAA
*
26438162 AAAT AAAT AAAT AAAT AAAT AAAAT AAGAT AGAA- AAAT AAAAA AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT AA-AT A-AAT AAAT -AAAT AAAT
*
26438209 AAA- AAAA AAAT AA
1 AAAT AAAT AAAT AA
26438222 CTGGGTTGCC
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
3 5 0.11
4 30 0.64
5 11 0.23
6 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:26438179 original size:12 final size:12
Alignment explanation
Indices: 26438162--26438221 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
26438152 TCCTGGACAA
26438162 AAATAAATAAAT
1 AAATAAATAAAT
26438174 AAATAAATAAAAT
1 AAATAAAT-AAAT
26438187 AAGATAGAA-AAAT
1 AA-ATA-AATAAAT
*
26438200 AAAAAAAATAAA-
1 -AAATAAATAAAT
*
26438212 AAAAAAATAA
1 AAATAAATAA
26438222 CTGGGTTGCC
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
11 10 0.24
12 10 0.24
13 15 0.36
14 5 0.12
15 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (12 bp):
AAATAAATAAAT
Found at i:26438216 original size:9 final size:8
Alignment explanation
Indices: 26438160--26438215 Score: 58
Period size: 8 Copynumber: 6.6 Consensus size: 8
26438150 TTTCCTGGAC
26438160 AAAAATAA
1 AAAAATAA
*
26438168 ATAAATAA
1 AAAAATAA
*
26438176 ATAAATAA
1 AAAAATAA
*
26438184 AATAAGATAG
1 AA-AA-ATAA
26438194 AAAAATAAA
1 AAAAAT-AA
26438203 AAAAATAA
1 AAAAATAA
26438211 AAAAA
1 AAAAA
26438216 AAATAACTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 25 0.61
9 11 0.27
10 5 0.12
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (8 bp):
AAAAATAA
Found at i:26439419 original size:21 final size:21
Alignment explanation
Indices: 26439393--26439432 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26439383 ATAGATGCCT
*
26439393 CAGTTTTCTTTTGAAAATCCA
1 CAGTTTGCTTTTGAAAATCCA
*
26439414 CAGTTTGCTTTTGGAAATC
1 CAGTTTGCTTTTGAAAATC
26439433 TATAGATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (21 bp):
CAGTTTGCTTTTGAAAATCCA
Found at i:26439442 original size:21 final size:21
Alignment explanation
Indices: 26439400--26439443 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
26439390 CCTCAGTTTT
*
26439400 CTTTTGAAAATCCACAGTTTG
1 CTTTTGAAAATCCACAGATTG
* * *
26439421 CTTTTGGAAATCTATAGATTG
1 CTTTTGAAAATCCACAGATTG
26439442 CT
1 CT
26439444 GCTGAAATTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (21 bp):
CTTTTGAAAATCCACAGATTG
Found at i:26444156 original size:96 final size:96
Alignment explanation
Indices: 26443991--26444172 Score: 233
Period size: 96 Copynumber: 1.9 Consensus size: 96
26443981 AAAGCTTTAA
* * * **
26443991 AATCGAGGCAATATTCTTTTATTTCGAGTTTTGAAATTTTGTGCCTTAACTTACTAAGTGCAATT
1 AATCGAGGCAATATTCTCTTATTTCGAGTTATGAAAATTTGTGCCTTAACTTACTAAGTGCAACC
**
26444056 TTTCTTTAAATCGAAATAATCGAATACCCTT
66 TTTCTCCAAATCGAAATAATCGAATACCCTT
* * *
26444087 AATCGAGGCAATGTT-TCCTTATCTTCG-GTTATGAAAATTTGTGCCTTAACTTACTAGGTGCGA
1 AATCGAGGCAATATTCT-CTTAT-TTCGAGTTATGAAAATTTGTGCCTTAACTTACTAAGTGCAA
*
26444150 CCTTTCTCCAAATCGAGATAATC
64 CCTTTCTCCAAATCGAAATAATC
26444173 AAACATCCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
95 1 0.01
96 68 0.93
97 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (96 bp):
AATCGAGGCAATATTCTCTTATTTCGAGTTATGAAAATTTGTGCCTTAACTTACTAAGTGCAACC
TTTCTCCAAATCGAAATAATCGAATACCCTT
Found at i:26452420 original size:202 final size:201
Alignment explanation
Indices: 26452015--26452458 Score: 748
Period size: 202 Copynumber: 2.2 Consensus size: 201
26452005 GGCTATACAC
* *
26452015 AAAC-AGCGAGGCGATCATGTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGC
1 AAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGC
26452079 GAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGT
66 GAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGT
* * *
26452144 TAGCTTCCTGATGAGATACAGAGAAGTGGACCCAAATTCGTCTTCCTGATGAGACACAGAGAAGC
131 TAGCTTCCTGATGAGATACAGAGAAGCGGACCCAAATTCGACTTCCTGATGAGACAAAGAGAAGC
26452209 GAATTG
196 GAATTG
*
26452215 AAACAAGCGAGGCGGTCATCTTCTTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAATG
1 AAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTC-AATG
*
26452280 CGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACATTGAGAAGCAGGTCGAAGCAATAAAATG
65 CGAGCAAATCTTCGAA-CCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATG
**
26452345 GTTAGCTTCCTGATGAGATATGGAGAAGCGGA-CCAAATTCGACTTCCTGATGAGACAAAGAGAA
129 GTTAGCTTCCTGATGAGATACAGAGAAGCGGACCCAAATTCGACTTCCTGATGAGACAAAGAGAA
26452409 GCGAATTG
194 GCGAATTG
* * *
26452417 AAACAAGCAAGGCAGTCATCTTCCTGATGAGATATAGAGAAG
1 AAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAG
26452459 TATGCCGACT
Statistics
Matches: 228, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
200 4 0.02
201 52 0.23
202 96 0.42
203 76 0.33
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (201 bp):
AAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAATGC
GAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGT
TAGCTTCCTGATGAGATACAGAGAAGCGGACCCAAATTCGACTTCCTGATGAGACAAAGAGAAGC
GAATTG
Found at i:26452829 original size:17 final size:17
Alignment explanation
Indices: 26452790--26452897 Score: 87
Period size: 17 Copynumber: 6.4 Consensus size: 17
26452780 GACCTAAACC
* *
26452790 ATTTAAATTTGCTTTGAA
1 ATTTAAATTT-ATTTTAA
26452808 A-TTAAATTTATTTTAA
1 ATTTAAATTTATTTTAA
26452824 ATTTAAATTTATTTCT-A
1 ATTTAAATTTATTT-TAA
* *
26452841 ATTTAAACTTAATTTAA
1 ATTTAAATTTATTTTAA
* * * *
26452858 GTTTGAATTTAATCTAA
1 ATTTAAATTTATTTTAA
*
26452875 ATTT-AATATTATTGTAA
1 ATTTAAAT-TTATTTTAA
26452892 ATTTAA
1 ATTTAA
26452898 TGTCCCTTTA
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
16 10 0.14
17 61 0.82
18 3 0.04
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.52
Consensus pattern (17 bp):
ATTTAAATTTATTTTAA
Found at i:26453647 original size:19 final size:19
Alignment explanation
Indices: 26453604--26453647 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26453594 TAAGTTTACT
26453604 ATAATATTTAATAATAATA
1 ATAATATTTAATAATAATA
*
26453623 AGAATA-TTAATTAATAATA
1 ATAATATTTAA-TAATAATA
*
26453642 CTAATA
1 ATAATA
26453648 ATTTTGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
ATAATATTTAATAATAATA
Found at i:26454268 original size:17 final size:17
Alignment explanation
Indices: 26454233--26454314 Score: 65
Period size: 17 Copynumber: 4.5 Consensus size: 17
26454223 GATCTTTAGG
*
26454233 TTTAAATTCATTATTAAA
1 TTTAAATTTATT-TTAAA
26454251 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
**
26454268 TTTAAAAATATTTGAAATAAA
1 TTTAAATTTATTT----TAAA
* *
26454289 TTTAAAATTTAATTAAAA
1 TTT-AAATTTATTTTAAA
26454307 TTTAAATT
1 TTTAAATT
26454315 AAAGGTCCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
17 21 0.40
18 17 0.33
21 7 0.13
22 7 0.13
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:26454314 original size:12 final size:12
Alignment explanation
Indices: 26454285--26454317 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26454275 ATATTTGAAA
26454285 TAAATTTAAAATT
1 TAAA-TTAAAATT
26454298 T-AATTAAAATT
1 TAAATTAAAATT
26454309 TAAATTAAA
1 TAAATTAAA
26454318 GGTCCAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.47
12 9 0.47
13 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATTAAAATT
Found at i:26456186 original size:161 final size:163
Alignment explanation
Indices: 26456010--26456332 Score: 506
Period size: 164 Copynumber: 2.0 Consensus size: 163
26456000 TTCAATTTAG
* * *
26456010 TCCTTTGACTGTTTGACTGCACTAGAGGCCGCCACGTGTCACTTTTTGGTTTATTTCT-TATCTA
1 TCCTTTGACTGTTTGACTGCACCAGAGGCCGCCACGTGTCACTTTTTGATTTATTTATGTATCTA
* * * *
26456074 GTCCCTGTCA-TTTTTAATTTGTTTTAATTTAATCCTCGAATCAACTTCTATTTAATTACAAAAT
66 GTCCCTATCATTTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTACTTAACTACAAAAT
*
26456138 TGGCCCAAGAATTTTTCAAGATTTATAAATTAA
131 TGGCCCAAGAATTTTTCAAGATTTACAAATTAA
* *
26456171 TCCTTTGACTGTTTGAGTGCACCAGAGGTCGCCACGTGTCACTTTTTGATTTATTTATGTATCTA
1 TCCTTTGACTGTTTGACTGCACCAGAGGCCGCCACGTGTCACTTTTTGATTTATTTATGTATCTA
* *
26456236 GTCCCTATCATTTTTTTAATTTGTTTTAATTTAATCTTCAAATCAACTTCTGCTTAACTACAAAA
66 GTCCCTATCA-TTTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTACTTAACTACAAAA
*
26456301 TTGGCCCGAGAATTTTTCAAGATTTACAAATT
130 TTGGCCCAAGAATTTTTCAAGATTTACAAATT
26456333 CGCCCTTTGA
Statistics
Matches: 146, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
161 53 0.36
162 15 0.10
164 78 0.53
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (163 bp):
TCCTTTGACTGTTTGACTGCACCAGAGGCCGCCACGTGTCACTTTTTGATTTATTTATGTATCTA
GTCCCTATCATTTTTTAATTTGTTTTAATTTAATCCTCAAATCAACTTCTACTTAACTACAAAAT
TGGCCCAAGAATTTTTCAAGATTTACAAATTAA
Found at i:26456508 original size:30 final size:29
Alignment explanation
Indices: 26456474--26456612 Score: 103
Period size: 29 Copynumber: 4.7 Consensus size: 29
26456464 CCTGATTTCA
26456474 CCAAAAATTACCATTTTACCCTCAAACTTT
1 CCAAAAATTACCATTTTACCCTC-AACTTT
* *
26456504 CC-AAAATT-CCATTATTAACCC-CGATTTT
1 CCAAAAATTACCATT-TT-ACCCTCAACTTT
26456532 ACCAAAAATTACCATTTTACCCTCGAACTTT
1 -CCAAAAATTACCATTTTACCCTC-AACTTT
* * *
26456563 -CTAAAATT-CAATTTTTAACCC-CGA-TTT
1 CCAAAAATTACCA-TTTT-ACCCTCAACTTT
26456590 AACCAAAAATTACCATTTTACCC
1 --CCAAAAATTACCATTTTACCC
26456613 CCGAATTCTC
Statistics
Matches: 87, Mismatches: 9, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
27 3 0.03
28 12 0.14
29 31 0.36
30 30 0.34
31 11 0.13
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (29 bp):
CCAAAAATTACCATTTTACCCTCAACTTT
Found at i:26456522 original size:59 final size:59
Alignment explanation
Indices: 26456415--26456811 Score: 450
Period size: 59 Copynumber: 6.8 Consensus size: 59
26456405 CCTGGATTGT
* * * *
26456415 CCAAAAATTACCATTTTACTCCT-GAA-TTCTCTAAAACTCTATTTTTAACCCTGATTTCA
1 CCAAAAATTACCATTTTAC-CCTCGAACTT-TCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
26456474 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTATTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
26456533 CCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCAATTTTTAACCCCGATTTAA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * **
26456592 CCAAAAATTACCATTTTACCCCCGAA-TTCTCC-AAATTCTATTTTTAACCTTGATTTCA
1 CCAAAAATTACCATTTTACCCTCGAACTT-TCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
26456650 CCAAAATTTACC-TTTATACCCCCGAACTTTCCAAAATTTCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTT-TACCCTCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * **
26456709 CC-AAAATTACCATTTAACCCCCAAATTTTCCAAAATTCCATTTTCGACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
26456767 CCAAAAATTACCATTTTGCCCTCGTAA--GTCCAAAATTACCATTTT
1 CCAAAAATTACCATTTTACCCTCG-AACTTTCCAAAATT-CCATTTT
26456812 GCCTCCGGGT
Statistics
Matches: 291, Mismatches: 37, Indels: 20
0.84 0.11 0.06
Matches are distributed among these distances:
57 3 0.01
58 106 0.36
59 178 0.61
60 4 0.01
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.36
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:26456749 original size:28 final size:27
Alignment explanation
Indices: 26456477--26456751 Score: 85
Period size: 29 Copynumber: 9.4 Consensus size: 27
26456467 GATTTCACCA
* * *
26456477 AAAATTACCATTTTACCCTCAAACTTTCC
1 AAAATT-CCATTTAACCC-CCAATTTTCC
*
26456506 AAAATTCCATTATTAA-CCCCGATTTTACC
1 AAAATTCCA-T-TTAACCCCCAATTTT-CC
* * * *
26456535 AAAAATTACCATTTTACCCTCGAACTTTCT
1 -AAAATT-CCATTTAACCC-CCAATTTTCC
* * *
26456565 AAAATTCAATTTTTAA-CCCCGATTTAACC
1 AAAATTCCA--TTTAACCCCCAATTT-TCC
* *
26456594 AAAAATTACCATTTTACCCCCGAATTCTCC
1 -AAAATT-CCATTTAACCCCC-AATTTTCC
* *** *
26456624 -AAATTCTATTTTTAA-CCTTGATTTCACC
1 AAAATTCCA--TTTAACCCCCAATTT-TCC
*
26456652 AAAATTTACC-TTTATACCCCCGAACTTTCC
1 AAAA-TT-CCATTTA-ACCCCC-AATTTTCC
* *
26456682 AAAATTTCATTTTTAA-CCCCGATTTTACC
1 AAAATTCCA--TTTAACCCCCAATTTT-CC
26456711 AAAATTACCATTTAACCCCCAAATTTTCC
1 AAAATT-CCATTTAACCCCC-AATTTTCC
26456740 AAAATTCCATTT
1 AAAATTCCATTT
26456752 TCGACCCCGA
Statistics
Matches: 177, Mismatches: 39, Indels: 61
0.64 0.14 0.22
Matches are distributed among these distances:
27 5 0.03
28 43 0.24
29 61 0.34
30 47 0.27
31 21 0.12
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.36
Consensus pattern (27 bp):
AAAATTCCATTTAACCCCCAATTTTCC
Found at i:26456810 original size:117 final size:116
Alignment explanation
Indices: 26456415--26456811 Score: 455
Period size: 117 Copynumber: 3.4 Consensus size: 116
26456405 CCTGGATTGT
* * * *
26456415 CCAAAAATTACCATTTTACTCCT-GAA-TTCTCTAAAACTCTATTTTTAACCCTGATTTCACCAA
1 CCAAAAATTACCATTTTAC-CCTCGAACTTC-C-AAAATTCCATTTTTAACCCCGATTTAACCAA
* * *
26456478 AAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTATTAACCCCGATTTTA
63 AAATTACCATTTTACCCCCAAATTTTCCAAAATTCCATT-TTAACCCCGATTTCA
* *
26456533 CCAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCAATTTTTAACCCCGATTTAACCAAAA
1 CCAAAAATTACCATTTTACCCTCGAAC-TTCCAAAATTCCATTTTTAACCCCGATTTAACCAAAA
* * * **
26456598 ATTACCATTTTACCCCCGAATTCTCC-AAATTCTATTTTTAACCTTGATTTCA
65 ATTACCATTTTACCCCCAAATTTTCCAAAATTCCA-TTTTAACCCCGATTTCA
* * * *
26456650 CCAAAATTTACC-TTTATACCCCCGAACTTTCCAAAATTTCATTTTTAACCCCGATTTTACC-AA
1 CCAAAAATTACCATTT-TACCCTCGAAC-TTCCAAAATTCCATTTTTAACCCCGATTTAACCAAA
* *
26456713 AATTACCATTTAACCCCCAAATTTTCCAAAATTCCATTTTCGACCCCGATTTCA
64 AATTACCATTTTACCCCCAAATTTTCCAAAATTCCATTTT-AACCCCGATTTCA
* *
26456767 CCAAAAATTACCATTTTGCCCTCGTAA-GTCCAAAATTACCATTTT
1 CCAAAAATTACCATTTTACCCTCG-AACTTCCAAAATT-CCATTTT
26456812 GCCTCCGGGT
Statistics
Matches: 238, Mismatches: 31, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
116 42 0.18
117 113 0.47
118 80 0.34
120 3 0.01
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.36
Consensus pattern (116 bp):
CCAAAAATTACCATTTTACCCTCGAACTTCCAAAATTCCATTTTTAACCCCGATTTAACCAAAAA
TTACCATTTTACCCCCAAATTTTCCAAAATTCCATTTTAACCCCGATTTCA
Found at i:26458507 original size:29 final size:29
Alignment explanation
Indices: 26458430--26458680 Score: 197
Period size: 29 Copynumber: 8.6 Consensus size: 29
26458420 CCCTAAACAA
*
26458430 TCCAAAAATTATATTTTAACCCTCG-AACT
1 TCCAAAAATTATATTTTGACCC-CGAAACT
* * *
26458459 TCTCCAAAATTATATTTTTGGCCTCGAAACT
1 TC-CAAAAATTATA-TTTTGACCCCGAAACT
** **
26458490 TTTAAAAATTATATTTTGACCTTGAAACT
1 TCCAAAAATTATATTTTGACCCCGAAACT
26458519 TCCAAAAATTATATTTTGACCCCGAAACT
1 TCCAAAAATTATATTTTGACCCCGAAACT
* *
26458548 TCCAAAAATTACATTTTTGACCCCAAAACT
1 TCCAAAAATTATA-TTTTGACCCCGAAACT
** *
26458578 TTTAAAAATTACATTTTTG-CCCCG-AACT
1 TCCAAAAATTATA-TTTTGACCCCGAAACT
* * * *
26458606 TCTAAAAAATACT-TTTTAACCCCAAAACT
1 TCCAAAAATTA-TATTTTGACCCCGAAACT
* ** *
26458635 TCCCAAAATTCCATTTTTATCCCC-AAACT
1 TCCAAAAATTATATTTTGA-CCCCGAAACT
* *
26458664 TTCAAAAATTACATTTT
1 TCCAAAAATTATATTTT
26458681 TAACCTCAAA
Statistics
Matches: 181, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
27 4 0.02
28 17 0.09
29 92 0.51
30 57 0.31
31 11 0.06
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.36
Consensus pattern (29 bp):
TCCAAAAATTATATTTTGACCCCGAAACT
Found at i:26458548 original size:58 final size:59
Alignment explanation
Indices: 26458430--26458710 Score: 227
Period size: 59 Copynumber: 4.8 Consensus size: 59
26458420 CCCTAAACAA
* * * * *
26458430 TCCAAAAATTATATTTTAACCCTC-GAACTTCTCCAAAATTATATTTTTGGCCTCGAAACT
1 TCCAAAAATTATATTTTAACCC-CAAAACTTC-CAAAAATTACATTTTTGACCCCGAAACT
** * *** *
26458490 TTTAAAAATTATATTTTGACCTTGAAACTTCCAAAAATTATA-TTTTGACCCCGAAACT
1 TCCAAAAATTATATTTTAACCCCAAAACTTCCAAAAATTACATTTTTGACCCCGAAACT
* * **
26458548 TCCAAAAATTACATTTTTGACCCCAAAACTTTTAAAAATTACATTTTTG-CCCCG-AACT
1 TCCAAAAATTATA-TTTTAACCCCAAAACTTCCAAAAATTACATTTTTGACCCCGAAACT
* * * *
26458606 TCTAAAAAATACT-TTTTAACCCCAAAACTTCCCAAAATTCCATTTTT-ATCCCC-AAACT
1 TCCAAAAATTA-TATTTTAACCCCAAAACTTCCAAAAATTACATTTTTGA-CCCCGAAACT
* * * *
26458664 TTCAAAAATTACATTTTTAACCTCAAAACTTTC-AAAATTACCATTTT
1 TCCAAAAATTATA-TTTTAACCCCAAAACTTCCAAAAATTA-CATTTT
26458711 GCCCTCAAAC
Statistics
Matches: 178, Mismatches: 33, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
57 29 0.16
58 59 0.33
59 61 0.34
60 29 0.16
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.36
Consensus pattern (59 bp):
TCCAAAAATTATATTTTAACCCCAAAACTTCCAAAAATTACATTTTTGACCCCGAAACT
Found at i:26458681 original size:29 final size:29
Alignment explanation
Indices: 26458432--26458710 Score: 192
Period size: 29 Copynumber: 9.5 Consensus size: 29
26458422 CTAAACAATC
* * *
26458432 CAAAAATTATATTTTAACCCTC-GAACTTCT
1 CAAAAATTACATTTTTACCC-CAAAACTT-T
* * * * *
26458462 CCAAAATTATATTTTTGGCCTCGAAACTTT
1 CAAAAATTACATTTTT-ACCCCAAAACTTT
* * * *** *
26458492 TAAAAATTATATTTTGACCTTGAAACTTC
1 CAAAAATTACATTTTTACCCCAAAACTTT
* * * *
26458521 CAAAAATTATATTTTGACCCCGAAACTTC
1 CAAAAATTACATTTTTACCCCAAAACTTT
26458550 CAAAAATTACATTTTTGACCCCAAAACTTT
1 CAAAAATTACATTTTT-ACCCCAAAACTTT
* * *
26458580 TAAAAATTACATTTTTGCCCC-GAAC-TT
1 CAAAAATTACATTTTTACCCCAAAACTTT
* *
26458607 CTAAAAAATAC-TTTTTAACCCCAAAACTTC
1 C-AAAAATTACATTTTT-ACCCCAAAACTTT
* *
26458637 CCAAAATTCCATTTTTATCCCC-AAACTTT
1 CAAAAATTACATTTTTA-CCCCAAAACTTT
*
26458666 CAAAAATTACATTTTTAACCTCAAAACTTT
1 CAAAAATTACATTTTT-ACCCCAAAACTTT
26458696 C-AAAATTACCATTTT
1 CAAAAATTA-CATTTT
26458711 GCCCTCAAAC
Statistics
Matches: 204, Mismatches: 33, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
27 7 0.03
28 15 0.07
29 94 0.46
30 81 0.40
31 7 0.03
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.36
Consensus pattern (29 bp):
CAAAAATTACATTTTTACCCCAAAACTTT
Found at i:26458720 original size:58 final size:57
Alignment explanation
Indices: 26458432--26458739 Score: 216
Period size: 58 Copynumber: 5.3 Consensus size: 57
26458422 CTAAACAATC
* * * *
26458432 CAAAAATTATA-TTTTAACCCTC-GAACTTCTCCAAAATTATATTTTTGGCCTCGAAACTTT
1 CAAAAATTACATTTTTAA-CCTCAAAACTT-T-CAAAATTACATTTTT-GCC-CCAAACTTT
* * * ** * * *
26458492 TAAAAATTATA-TTTTGACCTTGAAACTTCCAAAAATTATA-TTTTGACCCCGAAACTTC
1 CAAAAATTACATTTTTAACCTCAAAACTTTC-AAAATTACATTTTTG-CCCC-AAACTTT
* * * *
26458550 CAAAAATTACATTTTTGACCCCAAAACTTTTAAAAATTACATTTTTGCCCCGAAC-TT
1 CAAAAATTACATTTTTAACCTCAAAAC-TTTCAAAATTACATTTTTGCCCCAAACTTT
* * * * *
26458607 CTAAAAAATAC-TTTTTAACCCCAAAACTTCCCAAAATTCCATTTTTATCCCCAAACTTT
1 C-AAAAATTACATTTTTAACCTCAAAACTT-TCAAAATTACATTTTT-GCCCCAAACTTT
* *
26458666 CAAAAATTACATTTTTAACCTCAAAACTTTCAAAATTACCA-TTTTGCCCTCAAACATC
1 CAAAAATTACATTTTTAACCTCAAAACTTTCAAAATTA-CATTTTTGCCC-CAAACTTT
**
26458724 CAAAAAACACATTTTT
1 CAAAAATTACATTTTT
26458740 TATCTCGATT
Statistics
Matches: 201, Mismatches: 33, Indels: 30
0.76 0.12 0.11
Matches are distributed among these distances:
56 2 0.01
57 35 0.17
58 79 0.39
59 58 0.29
60 27 0.13
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (57 bp):
CAAAAATTACATTTTTAACCTCAAAACTTTCAAAATTACATTTTTGCCCCAAACTTT
Found at i:26462468 original size:21 final size:22
Alignment explanation
Indices: 26462434--26462481 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
26462424 TTTATAAAGG
26462434 TTATATTTTATAAATTT-TATA
1 TTATATTTTATAAATTTATATA
*
26462455 TTAT-TTTTACTAAATTTATGTA
1 TTATATTTTA-TAAATTTATATA
26462477 TTATA
1 TTATA
26462482 AAAAATGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 11 0.48
22 7 0.30
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATATTTTATAAATTTATATA
Found at i:26466875 original size:23 final size:23
Alignment explanation
Indices: 26466827--26466875 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
26466817 TGACAAATAT
* * *
26466827 TTTTAAAAATTATTAAAAGACAA
1 TTTTAAAAATAATTAAAAAAAAA
26466850 TTTTAAAAA-AATTAAAAAAAACA
1 TTTTAAAAATAATTAAAAAAAA-A
26466873 TTT
1 TTT
26466876 ACTCTAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (23 bp):
TTTTAAAAATAATTAAAAAAAAA
Found at i:26472571 original size:57 final size:58
Alignment explanation
Indices: 26472418--26472575 Score: 171
Period size: 57 Copynumber: 2.7 Consensus size: 58
26472408 TGGACTCTTA
* * *
26472418 GGGGCAAAATGGTAATTTTGG-GAAAATTTGGGGTTAAAAAT-GACATTTTAGAAGGTTC
1 GGGGAAAAATGGTAATTTTGGTG-AAATTAGGGG-TAAAAATGGACATTTTAGAAAGTTC
** * * * *
26472476 GGGGAAAAATGACAATTTTGGTGAAA-TCGGAGGCAAAAATGGA-GTTTTAGAAAGTTT
1 GGGGAAAAATGGTAATTTTGGTGAAATTAGG-GGTAAAAATGGACATTTTAGAAAGTTC
*
26472533 GGGGTAAAATGGTAATTTTGGTGAAATTAGGGGTAAAAATGGA
1 GGGGAAAAATGGTAATTTTGGTGAAATTAGGGGTAAAAATGGA
26472576 ATTACGGAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
57 54 0.65
58 28 0.34
59 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.31, T:0.28
Consensus pattern (58 bp):
GGGGAAAAATGGTAATTTTGGTGAAATTAGGGGTAAAAATGGACATTTTAGAAAGTTC
Found at i:26472738 original size:30 final size:30
Alignment explanation
Indices: 26472623--26472728 Score: 144
Period size: 30 Copynumber: 3.5 Consensus size: 30
26472613 TAGTTTTGGA
*
26472623 GTTAAAATATAATTTCAAAAAAGTTT-AGGG
1 GTTAAAATATAATTTTAAAAAAGTTTGA-GG
* * *
26472653 GTCAAAATGTAA-CTTATAAAAAGTTTGAGG
1 GTTAAAATATAATTTTA-AAAAAGTTTGAGG
26472683 GTTAAAATATAATTTTAAAAAAGTTTGAGG
1 GTTAAAATATAATTTTAAAAAAGTTTGAGG
26472713 GTTAAAATATAATTTT
1 GTTAAAATATAATTTT
26472729 TGGTGAGTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
29 2 0.03
30 60 0.91
31 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.16, T:0.36
Consensus pattern (30 bp):
GTTAAAATATAATTTTAAAAAAGTTTGAGG
Found at i:26474585 original size:17 final size:17
Alignment explanation
Indices: 26474552--26474640 Score: 103
Period size: 17 Copynumber: 5.4 Consensus size: 17
26474542 TATTTTACTG
*
26474552 AATTTATAA-TAATTTTA
1 AATTTA-AATTAAATTTA
*
26474569 AATTCAAATTAAATTTA
1 AATTTAAATTAAATTTA
*
26474586 AATTTACATTAAATTTA
1 AATTTAAATTAAATTTA
26474603 AATTT-AA-TAAATTTA
1 AATTTAAATTAAATTTA
*
26474618 AATTTAAAATAAATTTA
1 AATTTAAATTAAATTTA
*
26474635 ATTTTA
1 AATTTA
26474641 GAACAAATTC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.21
16 5 0.08
17 45 0.71
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTTAAATTAAATTTA
Found at i:26474586 original size:6 final size:6
Alignment explanation
Indices: 26474565--26474640 Score: 74
Period size: 6 Copynumber: 13.7 Consensus size: 6
26474555 TTATAATAAT
* *
26474565 TTTAAA TTCAAA -TTAAA TTTAAA TTTACA -TTAAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
26474610 --TAAA TTTAAA TTTAAA -ATAAA TTTAAT TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA
26474641 GAACAAATTC
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
3 1 0.02
4 2 0.04
5 14 0.25
6 40 0.70
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:26474619 original size:32 final size:32
Alignment explanation
Indices: 26474552--26474640 Score: 106
Period size: 32 Copynumber: 2.7 Consensus size: 32
26474542 TATTTTACTG
* * *
26474552 AATTTATAATAATTTTAAATTCAAATTAAATTTA
1 AATTTAAAATAAATTTAAATT-TAA-TAAATTTA
* *
26474586 AATTTACATTAAATTTAAATTTAATAAATTTA
1 AATTTAAAATAAATTTAAATTTAATAAATTTA
*
26474618 AATTTAAAATAAATTTAATTTTA
1 AATTTAAAATAAATTTAAATTTA
26474641 GAACAAATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 28 0.58
33 2 0.04
34 18 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (32 bp):
AATTTAAAATAAATTTAAATTTAATAAATTTA
Found at i:26474648 original size:17 final size:17
Alignment explanation
Indices: 26474565--26474649 Score: 66
Period size: 17 Copynumber: 5.1 Consensus size: 17
26474555 TTATAATAAT
* **
26474565 TTTAAATTCAAATTAAA
1 TTTAAATTTAAAACAAA
* **
26474582 TTTAAATTTACATTAAA
1 TTTAAATTTAAAACAAA
*
26474599 TTTAAATTT--AATAAA
1 TTTAAATTTAAAACAAA
*
26474614 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAACAAA
* *
26474631 TTTAATTTTAGAACAAA
1 TTTAAATTTAAAACAAA
26474648 TT
1 TT
26474650 CAAAATGGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
15 14 0.23
17 46 0.77
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.45
Consensus pattern (17 bp):
TTTAAATTTAAAACAAA
Found at i:26475374 original size:200 final size:200
Alignment explanation
Indices: 26475072--26475632 Score: 811
Period size: 201 Copynumber: 2.8 Consensus size: 200
26475062 AGGAAGATAG
* * **
26475072 ATTTGGTTCACTTCTCTA-TGGCTCATCAGGAAGCTAACCATTTTATTGCTTCTTCCTGCTTCTC
1 ATTTGGTCCACTTCT-TAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTC
* * *
26475136 AGTGTCTCATCAGGAAGCTAGGGTTCGACA-ATTTGCTCGCATTGAGCCTGGGTTGGCATACTTC
65 AGTGTCTCATCAGGAAGCTAGGGTTC-AAAGATTTGCTCGCATTGAGCATGAGTTGGCATACTTC
* * *
26475200 TTTGTATCTTATCAGGAAGATGACCGCTTCATTTGTTTCAATTCGCTTCTCTGGATCTCCTCAGG
129 TCTGTATCTCATCAGGAAGATGACCGCCTCATTTGTTTCAATTCGCTTCTCTGGATCTCCTCAGG
26475265 AAGACGA
194 AAGACGA
*
26475272 ATTTGGTCCACTTCTTAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTTTCA
1 ATTTGGTCCACTTCTTAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
* * **
26475337 GTATCTCATCAGGAAGCTAAGGTTCAAAGATTTGCTCGCATCAAGCATCGAGTTGGCATACTTCT
66 GTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCGCATTGAGCAT-GAGTTGGCATACTTCT
*
26475402 CTGTATCTCATCAGAAAGATGACCGCCTCATTTGTTTCAATTCGCTTCTCTGGATCTCCTCAGGA
130 CTGTATCTCATCAGGAAGATGACCGCCTCATTTGTTTCAATTCGCTTCTCTGGATCTCCTCAGGA
26475467 AGACGA
195 AGACGA
* **
26475473 ATTTGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTGCTTCTCA
1 ATTTGGTCCACTTCTTAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
* * * * * *
26475538 GTGTCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTTGCATTGAGCGTTGAGTTGGTATACTTCT
66 GTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCGCATTGAGC-ATGAGTTGGCATACTTCT
* * * *
26475603 CTGAATCTCATCATGAAGACGACTGCCTCA
130 CTGTATCTCATCAGGAAGATGACCGCCTCA
26475633 ATGTTTTGTG
Statistics
Matches: 322, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
199 4 0.01
200 96 0.30
201 221 0.69
202 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (200 bp):
ATTTGGTCCACTTCTTAGTGTCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
GTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCGCATTGAGCATGAGTTGGCATACTTCTC
TGTATCTCATCAGGAAGATGACCGCCTCATTTGTTTCAATTCGCTTCTCTGGATCTCCTCAGGAA
GACGA
Found at i:26476175 original size:100 final size:100
Alignment explanation
Indices: 26476025--26476460 Score: 617
Period size: 100 Copynumber: 4.4 Consensus size: 100
26476015 AAATCTTCGT
* * * * * * *
26476025 GGTATTGGATCTGCCGTTGC-GTCTTAGATCCTTT-CCTTCCTGTTTTTGAGGTACACGGTCTGC
1 GGTACTGGATCTACCATTGCGGTCTTAGAT-CTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGC
* * *
26476088 CTTTGCGATTTAGACCTTTCCCTTTTGTATCTTTGC
65 CGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
**
26476124 GGTACTGGATAC-ACCATTGTAGTCTTAGATCTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGC
1 GGTACTGGAT-CTACCATTGCGGTCTTAGATCTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGC
26476188 CGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
65 CGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
* * * * *
26476224 GGTACTGGATCTGCCATTGCGCTCTTAGATCTTTCCCGTCATGTTTTTGAGCTACACGGTCCGCC
1 GGTACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGCC
* *
26476289 GTTGTGGCTTAGACCTTTCCCTTTAGTATCTTTGC
66 GTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
* *
26476324 GGTACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTCGTGTTTCTAAGGTACACGGTCCACC
1 GGTACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGCC
* *
26476389 GTTGTGACTTAGACCTTTCCCTTTAGTATCTTTGT
66 GTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
*
26476424 GGTACTGGATCCACCATTGCGGTCTTAGATCTTTCCC
1 GGTACTGGATCTACCATTGCGGTCTTAGATCTTTCCC
26476461 ATCAAACCTG
Statistics
Matches: 303, Mismatches: 30, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
99 19 0.06
100 284 0.94
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (100 bp):
GGTACTGGATCTACCATTGCGGTCTTAGATCTTTCCCGTCGTGTTTCTGAGGTACACGGTCCGCC
GTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGC
Found at i:26477665 original size:18 final size:18
Alignment explanation
Indices: 26477642--26477700 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
26477632 CTCCTTTCTA
*
26477642 TTTTGTTTTTCTTCTTGT
1 TTTTGTTTTTCTTTTTGT
*
26477660 TTTTGTTTTTGTTTTTGT
1 TTTTGTTTTTCTTTTTGT
* *
26477678 TTCTCTTTTTCTTATTTGT
1 TTTTGTTTTTCTT-TTTGT
26477697 TTTT
1 TTTT
26477701 CTTCATTGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 26 0.76
19 8 0.24
ACGTcount: A:0.02, C:0.08, G:0.10, T:0.80
Consensus pattern (18 bp):
TTTTGTTTTTCTTTTTGT
Found at i:26477668 original size:5 final size:6
Alignment explanation
Indices: 26477642--26477700 Score: 64
Period size: 6 Copynumber: 9.7 Consensus size: 6
26477632 CTCCTTTCTA
* * * * *
26477642 TTTTGT TTTTCT TCTTGT TTTTGT TTTTGT TTTTGT TTCTCT TTTTCT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
26477690 TATTTGT TTTT
1 T-TTTGT TTTT
26477701 CTTCATTGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 39 0.89
7 5 0.11
ACGTcount: A:0.02, C:0.08, G:0.10, T:0.80
Consensus pattern (6 bp):
TTTTGT
Found at i:26483321 original size:30 final size:29
Alignment explanation
Indices: 26483287--26483386 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
26483277 AGGTTCGAGG
26483287 AAAAATGGTAATTTTGGTGAAATCGGGGGC
1 AAAAATGG-AATTTTGGTGAAATCGGGGGC
* *
26483317 AAAAATGGAGTTTT--AGAAAGTTCGGGGG-
1 AAAAATGGAATTTTGGTGAAA--TCGGGGGC
* * **
26483345 TAAAATGATAATTTTGGTGAAATTAGGGGC
1 AAAAATG-GAATTTTGGTGAAATCGGGGGC
26483375 AAAAATGGAATT
1 AAAAATGGAATT
26483387 ATGGAAAACT
Statistics
Matches: 54, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
27 4 0.07
28 6 0.11
29 26 0.48
30 14 0.26
31 4 0.07
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.28
Consensus pattern (29 bp):
AAAAATGGAATTTTGGTGAAATCGGGGGC
Found at i:26483350 original size:58 final size:57
Alignment explanation
Indices: 26483270--26483383 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
26483260 AAAAATGACA
* * *
26483270 TTTTAGAAGGTTCGAGGAAAAATGGTAATTTTGGTGAAATCGGGGGCAAAAATGGAG
1 TTTTAGAAAGTTCGAGGAAAAATGATAATTTTGGTGAAATCAGGGGCAAAAATGGAG
* * *
26483327 TTTTAGAAAGTTCGGGGGTAAAATGATAATTTTGGTGAAATTAGGGGCAAAAATGGA
1 TTTTAGAAAGTTC-GAGGAAAAATGATAATTTTGGTGAAATCAGGGGCAAAAATGGA
26483384 ATTATGGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 12 0.24
58 38 0.76
ACGTcount: A:0.36, C:0.04, G:0.32, T:0.28
Consensus pattern (57 bp):
TTTTAGAAAGTTCGAGGAAAAATGATAATTTTGGTGAAATCAGGGGCAAAAATGGAG
Found at i:26483386 original size:29 final size:30
Alignment explanation
Indices: 26483287--26483416 Score: 83
Period size: 28 Copynumber: 4.5 Consensus size: 30
26483277 AGGTTCGAGG
**
26483287 AAAAATGGTAATTTTGGTGAAA-TCGGGGGC
1 AAAAATGG-AATTTTGGTGAAACTTAGGGGC
* * * * *
26483317 AAAAATGGAGTTTT--AGAAAGTTCGGGGG
1 AAAAATGGAATTTTGGTGAAACTTAGGGGC
* *
26483345 TAAAATGATAATTTTGGTGAAA-TTAGGGGC
1 AAAAATG-GAATTTTGGTGAAACTTAGGGGC
* * *
26483375 AAAAATGGAATTATGG-AAAACTTAAGGG-
1 AAAAATGGAATTTTGGTGAAACTTAGGGGC
*
26483403 AAAAATGTAATTTT
1 AAAAATGGAATTTT
26483417 AAATAGTTTT
Statistics
Matches: 77, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
27 4 0.05
28 26 0.34
29 23 0.30
30 20 0.26
31 4 0.05
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (30 bp):
AAAAATGGAATTTTGGTGAAACTTAGGGGC
Found at i:26483408 original size:58 final size:57
Alignment explanation
Indices: 26483285--26483416 Score: 149
Period size: 58 Copynumber: 2.3 Consensus size: 57
26483275 GAAGGTTCGA
* * * * **
26483285 GGAAAAATGGTAATTTTGGTGAAATCGGGGGCAAAAATGGAGTTTTAGAAAGTTCGGG
1 GGAAAAAT-GTAATTTTGGTGAAATCAGGGGCAAAAATGGAATTATAGAAACTTCAAG
* * *
26483343 GGTAAAATGATAATTTTGGTGAAATTAGGGGCAAAAATGGAATTATGGAAAACTT-AAG
1 GGAAAAATG-TAATTTTGGTGAAATCAGGGGCAAAAATGGAATTATAG-AAACTTCAAG
26483401 GGAAAAATGTAATTTT
1 GGAAAAATGTAATTTT
26483417 AAATAGTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
57 8 0.13
58 49 0.79
59 5 0.08
ACGTcount: A:0.39, C:0.04, G:0.29, T:0.28
Consensus pattern (57 bp):
GGAAAAATGTAATTTTGGTGAAATCAGGGGCAAAAATGGAATTATAGAAACTTCAAG
Found at i:26483492 original size:60 final size:59
Alignment explanation
Indices: 26483404--26483655 Score: 319
Period size: 60 Copynumber: 4.2 Consensus size: 59
26483394 ACTTAAGGGA
* * * *
26483404 AAAATGTAATTTTA-AATAGTTTTGGGGTTAAAATATAATTTCAAAAAAGTTTAGGGGTC
1 AAAATGTAATTTTAGAA-AGTTTTAGGGTCAAAATATAATTTTAGAAAAGTTTAGGGGTC
* * * *
26483463 AAAATATAATTTATAGAAAGTTTTAGGGTTAAAATATAATTTTTGAAAAGTTTAGAGGTC
1 AAAATGTAATTT-TAGAAAGTTTTAGGGTCAAAATATAATTTTAGAAAAGTTTAGGGGTC
* * *
26483523 AAAATGCAATTTATAGAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTT-TAGAAAGTTTTAGGGTCAAAATATAATTTTAGAAAAGTTTAGGGGTC
* *
26483583 AAAATGTAATATTGAGAAAGTTTT-GGGATCAAAATATAATTTTAGAAAAGTTTAGGGGTT
1 AAAATGTAAT-TTTAGAAAGTTTTAGGG-TCAAAATATAATTTTAGAAAAGTTTAGGGGTC
*
26483643 AAAATGTCATTTT
1 AAAATGTAATTTT
26483656 TGGATAGTTT
Statistics
Matches: 172, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
59 16 0.09
60 152 0.88
61 4 0.02
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (59 bp):
AAAATGTAATTTTAGAAAGTTTTAGGGTCAAAATATAATTTTAGAAAAGTTTAGGGGTC
Found at i:26483655 original size:30 final size:30
Alignment explanation
Indices: 26483404--26483670 Score: 240
Period size: 30 Copynumber: 8.9 Consensus size: 30
26483394 ACTTAAGGGA
* * * *
26483404 AAAATGTAATTTTA-AATAGTTTTGGGGTT
1 AAAATATAATTTTAGAAAAGTTTAGGGGTC
* *
26483433 AAAATATAATTTCAAAAAAGTTTAGGGGTC
1 AAAATATAATTTTAGAAAAGTTTAGGGGTC
*
26483463 AAAATATAATTTATAG-AAAGTTTTA-GGGTT
1 AAAATATAATTT-TAGAAAAG-TTTAGGGGTC
* *
26483493 AAAATATAATTTTTGAAAAGTTTAGAGGTC
1 AAAATATAATTTTAGAAAAGTTTAGGGGTC
**
26483523 AAAATGCAATTTATAG-AAAGTTTTA-GGGTC
1 AAAATATAATTT-TAGAAAAG-TTTAGGGGTC
* *
26483553 AAAATATAATTTTGGAAAAGTTTAGGGGTT
1 AAAATATAATTTTAGAAAAGTTTAGGGGTC
* * * *
26483583 AAAATGTAATATT-GAGAAAGTTTTGGGATC
1 AAAATATAATTTTAGA-AAAGTTTAGGGGTC
*
26483613 AAAATATAATTTTAGAAAAGTTTAGGGGTT
1 AAAATATAATTTTAGAAAAGTTTAGGGGTC
* * * * *
26483643 AAAATGTCATTTTTGGATAGTTTAGGGG
1 AAAATATAATTTTAGAAAAGTTTAGGGG
26483671 CTTTCAGGGC
Statistics
Matches: 193, Mismatches: 34, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
29 26 0.13
30 154 0.80
31 13 0.07
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.37
Consensus pattern (30 bp):
AAAATATAATTTTAGAAAAGTTTAGGGGTC
Found at i:26485606 original size:17 final size:17
Alignment explanation
Indices: 26485584--26485652 Score: 84
Period size: 17 Copynumber: 4.0 Consensus size: 17
26485574 TTATAATATT
* *
26485584 TTAAATTCAAATTTACA
1 TTAAATTTAAATTTAAA
26485601 TTAAATTTAAATTTAAA
1 TTAAATTTAAATTTAAA
*
26485618 ATAAATTTAAATTTTAAA
1 TTAAATTTAAA-TTTAAA
* *
26485636 ATAAATTTAATTTTAAA
1 TTAAATTTAAATTTAAA
26485653 ACAAATTCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
17 31 0.66
18 16 0.34
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAATTTAAA
Found at i:26485610 original size:6 final size:6
Alignment explanation
Indices: 26485583--26485652 Score: 65
Period size: 6 Copynumber: 12.0 Consensus size: 6
26485573 TTTATAATAT
* * *
26485583 TTTAAA TTCAAA TTTACA -TTAAA TTTAAA TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
26485629 TTTTAAA -ATAAA TTTAAT TTTAAA
1 -TTTAAA TTTAAA TTTAAA TTTAAA
26485653 ACAAATTCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
5 12 0.24
6 32 0.64
7 6 0.12
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:26485635 original size:18 final size:18
Alignment explanation
Indices: 26485602--26485659 Score: 93
Period size: 17 Copynumber: 3.3 Consensus size: 18
26485592 AAATTTACAT
26485602 TAAATTTAAA-TTTAAAA
1 TAAATTTAAATTTTAAAA
26485619 TAAATTTAAATTTTAAAA
1 TAAATTTAAATTTTAAAA
26485637 TAAATTT-AATTTTAAAA
1 TAAATTTAAATTTTAAAA
*
26485654 CAAATT
1 TAAATT
26485660 CAAAATGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
17 25 0.64
18 14 0.36
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAATTTAAATTTTAAAA
Found at i:26485647 original size:23 final size:23
Alignment explanation
Indices: 26485581--26485648 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
26485571 AATTTATAAT
26485581 ATTTTAAATTCAAATTTACA-TTAA
1 ATTTTAAATT-AAATTTA-ATTTAA
* *
26485605 A-TTTAAATTTAAAATAAATTTAA
1 ATTTTAAA-TTAAATTTAATTTAA
*
26485628 ATTTTAAAATAAATTTAATTT
1 ATTTTAAATTAAATTTAATTT
26485649 TAAAACAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
22 1 0.03
23 26 0.72
24 9 0.25
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTTTAAATTAAATTTAATTTAA
Found at i:26490101 original size:19 final size:19
Alignment explanation
Indices: 26490079--26490123 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26490069 TTATATTAGG
26490079 ATTTAATATTTAAGA-TATT
1 ATTTAATATTTAA-ATTATT
* *
26490098 ATTTATTATTTAAATTTTT
1 ATTTAATATTTAAATTATT
26490117 ATTTAAT
1 ATTTAAT
26490124 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTAATATTTAAATTATT
Found at i:26495321 original size:19 final size:19
Alignment explanation
Indices: 26495299--26495343 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26495289 TTATATTAGG
26495299 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
26495318 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
26495337 ATTTAAT
1 ATTTAAT
26495344 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:26496165 original size:15 final size:16
Alignment explanation
Indices: 26496147--26496180 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
26496137 ACTTCCCTAT
26496147 TTTCTA-TTTCTTTAA
1 TTTCTATTTTCTTTAA
26496162 TTTCTATTTTCTTTAA
1 TTTCTATTTTCTTTAA
26496178 TTT
1 TTT
26496181 TTAAATCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTATTTTCTTTAA
Found at i:26511482 original size:15 final size:16
Alignment explanation
Indices: 26511450--26511482 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26511440 TCCTCTCTTG
*
26511450 TTCATTTTTGGTGTTT
1 TTCATTTCTGGTGTTT
26511466 TTCATTTCTGG-GTTT
1 TTCATTTCTGGTGTTT
26511481 TT
1 TT
26511483 TGTTGTTGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.09, G:0.18, T:0.67
Consensus pattern (16 bp):
TTCATTTCTGGTGTTT
Found at i:26515236 original size:2 final size:2
Alignment explanation
Indices: 26515229--26515271 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
26515219 CAAATACAGC
26515229 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26515271 T
1 T
26515272 CAAAGTACAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26522860 original size:5 final size:5
Alignment explanation
Indices: 26522852--26522889 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
26522842 CTTTGTTCTG
26522852 TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCT
1 TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCT
26522890 GCTACAGGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
TCTCC
Found at i:26523843 original size:31 final size:31
Alignment explanation
Indices: 26523808--26523886 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
26523798 TTTTTTTAAA
26523808 AATATAATAATAAATAAGATTTAAATAATTT
1 AATATAATAATAAATAAGATTTAAATAATTT
* * * *
26523839 AATATAATGATCAATTATATTTAAATAATTT
1 AATATAATAATAAATAAGATTTAAATAATTT
* *
26523870 AATATAATTATATATAA
1 AATATAATAATAAATAA
26523887 AATATAATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (31 bp):
AATATAATAATAAATAAGATTTAAATAATTT
Found at i:26523878 original size:10 final size:10
Alignment explanation
Indices: 26523826--26523906 Score: 50
Period size: 10 Copynumber: 8.4 Consensus size: 10
26523816 AATAAATAAG
26523826 ATTTAA-ATA
1 ATTTAATATA
26523835 ATTTAATATA
1 ATTTAATATA
*
26523845 ATGATCAAT-TA
1 AT--TTAATATA
26523856 TATTTAA-ATA
1 -ATTTAATATA
26523866 ATTTAATATA
1 ATTTAATATA
26523876 A-TTATATATA
1 ATTTA-ATATA
26523886 A---AATATA
1 ATTTAATATA
* *
26523893 ATTTTATCTA
1 ATTTAATATA
26523903 ATTT
1 ATTT
26523907 TTATATATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
7 6 0.10
8 1 0.02
9 15 0.26
10 28 0.48
11 2 0.03
12 6 0.10
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (10 bp):
ATTTAATATA
Found at i:26529200 original size:18 final size:17
Alignment explanation
Indices: 26529167--26529214 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 17
26529157 TGCTTTCATT
* *
26529167 ATTTAGAATAATTTTAA
1 ATTTAAAATAAATTTAA
26529184 ATTTAAACATAAATTTAA
1 ATTTAAA-ATAAATTTAA
26529202 ATTTAAAATAAAT
1 ATTTAAAATAAAT
26529215 CCAAATTGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.43
18 16 0.57
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
ATTTAAAATAAATTTAA
Found at i:26529220 original size:17 final size:18
Alignment explanation
Indices: 26529182--26529221 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
26529172 GAATAATTTT
**
26529182 AAATTTAAACATAAATTT
1 AAATTTAAACATAAATCC
26529200 AAATTTAAA-ATAAATCC
1 AAATTTAAACATAAATCC
26529217 AAATT
1 AAATT
26529222 GGGTTTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTTAAACATAAATCC
Found at i:26529735 original size:49 final size:49
Alignment explanation
Indices: 26529659--26530540 Score: 384
Period size: 49 Copynumber: 17.8 Consensus size: 49
26529649 AATGTCTTCG
* ** *
26529659 TGGTACTAGATTCGTAGTTGCGGCTTAAATCTTTCCCTTCATATTTTCA
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
* * ** * *
26529708 TGGTACTGGATTCGTCGTTGCGACTTAAATTTTTCCCACCATATCTTCG
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
* * *
26529757 TGGTACTGGATTCACCGTTGCTG-CTTAAATCTTTCCCTTCATGTTTTTGA
1 TGGTACTGGATTCGCCGTTGC-GACTTAAATCTTTCCCTTCAT-ATTTTCA
* * * * * * *
26529807 -GGTACACGG-TCCGCCGTTGCGACTTAGACCTTTCCTTTTAGTATCTTT-G
1 TGGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCA-TAT-TTTCA
*** * ** * *
26529856 TGGTACTGGATTTATCGTTGTGACTTAAATCTTTCCCACCATATCTTCG
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
* * * *
26529905 TGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGA
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTT-TCA
* ** * * * *
26529955 -GGTACATGG-TCCGTTGTTGCGACTTAGACCTTTCCCTTTAGTATCTTT-G
1 TGGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCA-TAT-TTTCA
* * * * * ** *
26530004 TGGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCTTTCACGTTTCTGA
1 TGGTACTGGATTCGCCGTTGC-GACTTAAATCTTTCCCTTCATATTT-TCA
* * * * **
26530055 -GGTACACGG-TCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGC-
1 TGGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCC-TTCATAT-TTT-CA
* * * * * *
26530105 -GGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTCCGTATCTTCG
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
* * * *
26530153 TGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTTCCTTCATGTTTCTGA
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTT-TCA
* * * * * *
26530203 -GGTACACGG-TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTT-G
1 TGGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCA-TAT-TTTCA
* * * * * * *
26530252 TGGTACTGGATCCGCCATTGTGGTCTTAGATCTTTCCCTTCATGTCTTCA
1 TGGTACTGGATTCGCCGTTG-CGACTTAAATCTTTCCCTTCATATTTTCA
* * * * * *
26530302 TGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCTCTTCTTGTCTTC-
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
* * ** * * * * ** *
26530350 TGAGGTACACGG-TCCGCTATTACGATTTAGACCTTTCCCTTTTGTATCTTT-G
1 T--GGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCC-TTCATAT-TTTCA
* * * * * *
26530402 TGGTATTGGA-TCTGCCATTGTGGTCTTAGATCTTTCCCTTTAT-TTCTTCA
1 TGGTACTGGATTC-GCCGTTG-CGACTTAAATCTTTCCCTTCATATT-TTCA
* * *
26530452 TGGTACTGGATTCGCTGTTGCGACTTAAATCTTTCCCTTCTTATCTTTTGA
1 TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTC--ATATTTTCA
* * * *
26530503 -GGTACACGG-TCCGCCGTTGCGACTTAGACCTTTCCCTT
1 TGGTAC-TGGATTCGCCGTTGCGACTTAAATCTTTCCCTT
26530541 TGTATCTTTG
Statistics
Matches: 625, Mismatches: 159, Indels: 97
0.71 0.18 0.11
Matches are distributed among these distances:
47 1 0.00
48 7 0.01
49 318 0.51
50 225 0.36
51 69 0.11
52 5 0.01
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (49 bp):
TGGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATATTTTCA
Found at i:26529926 original size:99 final size:98
Alignment explanation
Indices: 26529653--26530336 Score: 368
Period size: 99 Copynumber: 6.9 Consensus size: 98
26529643 GGCTATAATG
* *** * *
26529653 TCTTCGTGGTACTAGATTCGTAGTTGCGGCTTAAATCTTTCCCTTCATATTTTCATGGTACTGGA
1 TCTTCGTGGTACTGGATTCACCGTTGCTGCTTAAATCTTTCCCTTCATATTTTCGTGGTACTGGA
* *
26529718 TTCGTCGTTGCGACTTAAATTTTTCCCACCATA
66 TTCGCCGTTGCGACTTAAATCTTTCCCACCATA
* * * *
26529751 TCTTCGTGGTACTGGATTCACCGTTGCTGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACACGG
1 TCTTCGTGGTACTGGATTCACCGTTGCTGCTTAAATCTTTCCCTTCATATTTTCGTGGTAC-TGG
* * * ****
26529816 -TCCGCCGTTGCGACTTAGACCTTTCCTTTTAGTA
65 ATTCGCCGTTGCGACTTAAATCTTTCCCACCA-TA
* * * ** *
26529850 TCTTTGTGGTACTGGATTTATCGTTG-TGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGG
1 TCTTCGTGGTACTGGATTCACCGTTGCTG-CTTAAATCTTTCCCTTCATATTTTCGTGGTACTGG
* * ** *
26529914 ATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATG
65 ATTCGCCGTTGCGACTTAAATCTTTCCCACCATA
* * *** * * *
26529948 T-TTCTGAGGTACATGG-TCCGTTGTTGC-GACTTAGACCTTTCCCTTTAGTATCTTT-GTGGTA
1 TCTTC-GTGGTAC-TGGATTCACCGTTGCTG-CTTAAATCTTTCCCTTCA-TAT-TTTCGTGGTA
* * * * *** **
26530009 CTGGATCCGCCATTGCGGTCTTAGATCTTTCCTTTCACG
61 CTGGATTCGCCGTTGC-GACTTAAATCTTTCCCACCATA
* * * * * * ** *
26530048 T-TTCTGAGGTACACGG-TCCGCCGTTGC-GACTTAGACCTTTCCCTTTTGTATCTTT-GCGGTA
1 TCTTC-GTGGTAC-TGGATTCACCGTTGCTG-CTTAAATCTTTCCC-TTCATAT-TTTCGTGGTA
* * * *
26530109 CTGGATTCACCGTTGCGGCTTAAATCTTTCCCTCCGTA
61 CTGGATTCGCCGTTGCGACTTAAATCTTTCCCACCATA
* * * * * *
26530147 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTTCCTTCAT-GTTTCTGAGGTACACG
1 TCTTCGTGGTACTGGATTCACCGTTGCTGCTTAAATCTTTCCCTTCATATTTTC-GTGGTAC-TG
* * * ***
26530211 G-TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTA
64 GATTCGCCGTTGCGACTTAAATCTTTCCCACCA-TA
* * * * * * * *
26530246 TCTTTGTGGTACTGGATCCGCCATTG-TGGTCTTAGATCTTTCCCTTCATGTCTTCATGGTACTG
1 TCTTCGTGGTACTGGATTCACCGTTGCT-G-CTTAAATCTTTCCCTTCATATTTTCGTGGTACTG
* *
26530310 GATTCGCCATTGCGGCTTAAATCTTTC
64 GATTCGCCGTTGCGACTTAAATCTTTC
26530337 TCTTCTTGTC
Statistics
Matches: 459, Mismatches: 105, Indels: 42
0.76 0.17 0.07
Matches are distributed among these distances:
96 3 0.01
97 2 0.00
98 141 0.31
99 176 0.38
100 131 0.29
101 6 0.01
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.39
Consensus pattern (98 bp):
TCTTCGTGGTACTGGATTCACCGTTGCTGCTTAAATCTTTCCCTTCATATTTTCGTGGTACTGGA
TTCGCCGTTGCGACTTAAATCTTTCCCACCATA
Found at i:26529976 original size:148 final size:148
Alignment explanation
Indices: 26529708--26530014 Score: 506
Period size: 148 Copynumber: 2.1 Consensus size: 148
26529698 CATATTTTCA
* *
26529708 TGGTACTGGATTCGTCGTTGCGACTTAAATTTTTCCCACCATATCTTCGTGGTACTGGATTCACC
1 TGGTACTGGATTCATCGTTGCGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGGATTCACC
* * *
26529773 GTTGCTGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACACGGTCCGCCGTTGCGACTTAGACCT
66 CTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCT
*
26529838 TTCCTTTTAGTATCTTTG
131 TTCCCTTTAGTATCTTTG
* * *
26529856 TGGTACTGGATTTATCGTTGTGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGGATTCGCC
1 TGGTACTGGATTCATCGTTGCGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGGATTCACC
* **
26529921 CTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGGTCCGTTGTTGCGACTTAGACCT
66 CTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCT
26529986 TTCCCTTTAGTATCTTTG
131 TTCCCTTTAGTATCTTTG
26530004 TGGTACTGGAT
1 TGGTACTGGAT
26530015 CCGCCATTGC
Statistics
Matches: 147, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
148 147 1.00
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.40
Consensus pattern (148 bp):
TGGTACTGGATTCATCGTTGCGACTTAAATCTTTCCCACCATATCTTCGTGGTACTGGATTCACC
CTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCT
TTCCCTTTAGTATCTTTG
Found at i:26530066 original size:100 final size:99
Alignment explanation
Indices: 26529897--26530490 Score: 399
Period size: 100 Copynumber: 6.0 Consensus size: 99
26529887 TTTCCCACCA
* * * * *
26529897 TATCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAT
1 TATCTTTGTGGTACTGGATCCGCCATTGCGGCTTAAATCTTTCCTTTCACGTTTCTGAGGTACAT
*
26529962 GGTCCGTTGTTGCGACTTAGACCTTTCCCTTTAG
66 GGTCCGCTGTTGCGACTTAGACCTTTCCCTTTAG
*
26529996 TATCTTTGTGGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCTTTCACGTTTCTGAGGTACA
1 TATCTTTGTGGTACTGGATCCGCCATTGCGG-CTTAAATCTTTCCTTTCACGTTTCTGAGGTACA
* * *
26530061 CGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTG
65 TGGTCCGCTGTTGCGACTTAGACCTTTCCCTTTAG
* * * * * * *
26530096 TATCTTTGCGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCC-CTC-CGTATCTTCGTGGTAC
1 TATCTTTGTGGTACTGGATCCGCCATTGCGGCTTAAATCTTTCCTTTCACGTTTC-T-GAGGTAC
* * * * * * *
26530159 -TGGATTCGCCGTTGCGGCTTAAATCTTTTCCTTCATG
64 ATGG-TCCGCTGTTGCGACTTAGACCTTTCCCTTTA-G
* * * * * * * * *
26530196 T-T-TCTGAGGTACACGG-TCCGCCGTTGCGACTTAGACCTTTCCCTTT-A-GTATCTTTGTGGT
1 TATCTTTGTGGTAC-TGGATCCGCCATTGCGGCTTAAATCTTT-CCTTTCACGT-T-TCTGAGGT
** * * * *
26530256 AC-TGGATCCGCCATTGTGGTCTTAGATCTTTCCCTTCA-
62 ACATGG-TCCGCTGTTG-CGACTTAGACCTTTCCCTTTAG
* ** * **
26530294 TGTCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTT-CTCTTCTTGTCTTCTGAGGTAC
1 TATCTTTGTGGTACTGGATCCGCCATTGCGGCTTAAATCTTTCCT-TTCACGT-TTCTGAGGTAC
* * * * *
26530358 ACGGTCCGCTATTACGATTTAGACCTTTCCCTTTTG
64 ATGGTCCGCTGTTGCGACTTAGACCTTTCCCTTTAG
* * * * *
26530394 TATCTTTGTGGTATTGGATCTGCCATTGTGGTCTTAGATCTTTCCCTTT-A--TTTCTTCATGGT
1 TATCTTTGTGGTACTGGATCCGCCATTGCGG-CTTAAATCTTT-CCTTTCACGTTTC-TGA-GGT
* * *
26530456 AC-TGGATTCGCTGTTGCGACTTAAATCTTTCCCTT
62 ACATGG-TCCGCTGTTGCGACTTAGACCTTTCCCTT
26530491 CTTATCTTTT
Statistics
Matches: 386, Mismatches: 83, Indels: 51
0.74 0.16 0.10
Matches are distributed among these distances:
97 5 0.01
98 38 0.10
99 121 0.31
100 202 0.52
101 16 0.04
102 2 0.01
103 2 0.01
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.40
Consensus pattern (99 bp):
TATCTTTGTGGTACTGGATCCGCCATTGCGGCTTAAATCTTTCCTTTCACGTTTCTGAGGTACAT
GGTCCGCTGTTGCGACTTAGACCTTTCCCTTTAG
Found at i:26530101 original size:248 final size:248
Alignment explanation
Indices: 26529653--26530293 Score: 914
Period size: 248 Copynumber: 2.6 Consensus size: 248
26529643 GGCTATAATG
* ** * *
26529653 TCTTCGTGGTACTAGATTCGTAGTTGCGGCTTAAATCTTTCCCTTCATATTT-TCATGGTAC-TG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGA-GGTACATG
* * ** *** * * * * *
26529716 GATTCGTCGTTGCGACTTAAATTTTTCCCACCA-TATCTTCGTGGTACTGGATTCACCGTTGCTG
65 G-TCCGTCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGG
* * *
26529780 -CTTAAATCTTTCCCTTCATGTTTTTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTT
129 TCTTAGATCTTTCCCTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTT
* * * *
26529844 TTAGTATCTTTGTGGTACTGGATTTATCGTTGTGACTTAAATCTTTCCCACCATA
194 TTAGTATCTTTGCGGTACTGGATTCACCGTTGCGACTTAAATCTTTCCCACCATA
*
26529899 TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGG
*
26529964 TCCGTTGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
66 TCCGTCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
*
26530029 TTAGATCTTTCCTTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTT
131 TTAGATCTTTCCCTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTT-CCTTT
* * *
26530094 T-GTATCTTTGCGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTCCGTA
195 TAGTATCTTTGCGGTACTGGATTCACCGTTGCGACTTAAATCTTTCCCACCATA
* *
26530147 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTTCCTTCATGTTTCTGAGGTACACGG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGG
* *
26530212 TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGTGGTC
66 TCCGTCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
26530277 TTAGATCTTTCCCTTCA
131 TTAGATCTTTCCCTTCA
26530294 TGTCTTCATG
Statistics
Matches: 353, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
246 75 0.21
247 31 0.09
248 241 0.68
249 6 0.02
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.39
Consensus pattern (248 bp):
TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGG
TCCGTCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
TTAGATCTTTCCCTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTTTT
AGTATCTTTGCGGTACTGGATTCACCGTTGCGACTTAAATCTTTCCCACCATA
Found at i:26530388 original size:248 final size:246
Alignment explanation
Indices: 26529653--26530441 Score: 743
Period size: 248 Copynumber: 3.2 Consensus size: 246
26529643 GGCTATAATG
* *** * * *
26529653 TCTTCGTGGTACTAGATTCGTAGTTGCGGCTTAAATCTTTCCCTTCATATTT-TCATGGTAC-TG
1 TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGA-GGTACACG
* * * ** *** * * * * *
26529716 GATTCGTCGTTGCGACTTAAATTTTTCCCACCA-TATCTTCGTGGTACTGGATTCACCGTTGCTG
65 G-TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGG
* * * * *
26529780 -CTTAAATCTTTCCCTTCATGTTTTTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTT-CCT
129 TCTTAGATCTTTCCCTTCACGTTTCT-AGGTACACGGTCCGCCATTGCGACTTAAACCTTTCCCT
* * ** * * ** * * *
26529843 TTTAGTATCTTTGTGGTACTGGATTTATCGTTGTGACTTAAATCTTTCCCACCATA
193 TTT-G-ATCTTTGAGGTACCGGATCCACCATTACGACTTAAACCTTTCCCTCCGTA
*
26529899 TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACATGG
1 TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGG
**
26529964 TCCGTTGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
66 TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
* * *
26530029 TTAGATCTTTCCTTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTT
131 TTAGATCTTTCCCTTCACGTTTCT-AGGTACACGGTCCGCCATTGCGACTTAAACCTTTCCCTTT
* * * * * * *
26530094 TGTATCTTTGCGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTCCGTA
195 TG-ATCTTTGAGGTACCGGATCCACCATTACGACTTAAACCTTTCCCTCCGTA
* *
26530147 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTTCCTTCATGTTTCTGAGGTACACGG
1 TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGG
*
26530212 TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGTGGTC
66 TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
* * * * * *
26530277 TTAGATCTTTCCCTTCATGTCTTC-ATGGTAC-TGGATTCGCCATTGCGGCTTAAATCTTTCTCT
131 TTAGATCTTTCCCTTCACGT-TTCTA-GGTACACGG-TCCGCCATTGCGACTTAAACCTTTCCCT
* * * * **
26530340 TCTTG-TCTTCTGAGGTACACGG-TCCGCTATTACGATTTAGACCTTTCCCTTTTGTA
193 T-TTGATCTT-TGAGGTAC-CGGATCCACCATTACGACTTAAACCTTTCCC-TCCGTA
* * * * *
26530396 TCTTTGTGGTATTGGA-TCTGCCATTGTGGTCTTAGATCTTTCCCTT
1 TCTTCGTGGTACTGGATTC-GCCCTTGCGG-CTTAAATCTTTCCCTT
26530442 TATTTCTTCA
Statistics
Matches: 465, Mismatches: 64, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
246 75 0.16
247 38 0.08
248 298 0.64
249 40 0.09
250 14 0.03
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (246 bp):
TCTTCGTGGTACTGGATTCGCCCTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGG
TCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTC
TTAGATCTTTCCCTTCACGTTTCTAGGTACACGGTCCGCCATTGCGACTTAAACCTTTCCCTTTT
GATCTTTGAGGTACCGGATCCACCATTACGACTTAAACCTTTCCCTCCGTA
Found at i:26530404 original size:150 final size:149
Alignment explanation
Indices: 26529977--26530605 Score: 809
Period size: 150 Copynumber: 4.2 Consensus size: 149
26529967 GTTGTTGCGA
* * ** * *
26529977 CTTAGACCTTTCCCTTTAGTATCTTTGTGGTACTGGATCCGCCATTGCGGTCTTAGATCTTTC-C
1 CTTAGATCTTTCCCTTCA-TATCTTCATGGTACTGGATTCGCCATTGCGG-CTTAAATCTTTCTC
* *
26530041 TTTCACGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGCG
64 -TTCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTG
* * * *
26530106 GTACTGGATTCACCGTTGCGG-
128 GTACTGGATCCGCCATTGTGGT
* * * * *
26530127 CTTAAATCTTTCCCTCCGTATCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTT-TCCT
1 CTTAGATCTTTCCCTTCATATCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCT-CT
*
26530191 TCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTAGTATCTTTGTGGT
65 TCATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGT
26530256 ACTGGATCCGCCATTGTGGT
130 ACTGGATCCGCCATTGTGGT
*
26530276 CTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCTCTT
1 CTTAGATCTTTCCCTTCATATCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCTCTT
* ** * *
26530341 CTTGTCTTCTGAGGTACACGGTCCGCTATTACGATTTAGACCTTTCCCTTTTGTATCTTTGTGGT
66 CATGT-TTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGT
* *
26530406 ATTGGATCTGCCATTGTGGT
130 ACTGGATCCGCCATTGTGGT
* * ** * *
26530426 CTTAGATCTTTCCCTTTATTTCTTCATGGTACTGGATTCGCTGTTGCGACTTAAATCTTTCCCTT
1 CTTAGATCTTTCCCTTCATATCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCTCTT
*
26530491 CTTATCTTT-TGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC-TTTGTATCTTTGTGG
66 C--ATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGG
* * * *
26530554 TACTGAATCTGCCGTCGTGGT
129 TACTGGATCCGCCATTGTGGT
* *
26530575 CTTAGATCTTTCCCTTCATGTCTTCACGGTA
1 CTTAGATCTTTCCCTTCATATCTTCATGGTA
26530606 TTGAGACCTG
Statistics
Matches: 423, Mismatches: 49, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
148 88 0.21
149 150 0.35
150 181 0.43
151 2 0.00
152 2 0.00
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.40
Consensus pattern (149 bp):
CTTAGATCTTTCCCTTCATATCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCTCTT
CATGTTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTA
CTGGATCCGCCATTGTGGT
Found at i:26534288 original size:13 final size:13
Alignment explanation
Indices: 26534258--26534308 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
26534248 CAGTAGACAG
26534258 TGCTGATGTGGC-
1 TGCTGATGTGGCA
*
26534270 -GCTGATATGGCA
1 TGCTGATGTGGCA
26534282 TGCTGATGTGGCA
1 TGCTGATGTGGCA
* *
26534295 CGCTGACGTGGCA
1 TGCTGATGTGGCA
26534308 T
1 T
26534309 TGACGTGGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
11 10 0.31
13 22 0.69
ACGTcount: A:0.16, C:0.20, G:0.37, T:0.27
Consensus pattern (13 bp):
TGCTGATGTGGCA
Found at i:26534507 original size:6 final size:6
Alignment explanation
Indices: 26534496--26534565 Score: 81
Period size: 6 Copynumber: 12.0 Consensus size: 6
26534486 TTAGAATAAT
** *
26534496 TTTAAA TTTAAA CATAAA TTTAAA TTTAAA TTTTAA --TAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
26534542 TTTAAA AATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA
26534566 ATAAATCCAA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
4 3 0.06
6 49 0.94
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:26534517 original size:18 final size:18
Alignment explanation
Indices: 26534490--26534571 Score: 103
Period size: 18 Copynumber: 4.4 Consensus size: 18
26534480 CATTATTTAG
*
26534490 AATAATTTTAAATTTAAA
1 AATAAATTTAAATTTAAA
*
26534508 CATAAATTTAAATTTAAA
1 AATAAATTTAAATTTAAA
26534526 TTTTAATAAATTTAAATTTAAA
1 ----AATAAATTTAAATTTAAA
26534548 AATAAATTTAAATTT-AA
1 AATAAATTTAAATTTAAA
26534565 AATAAAT
1 AATAAAT
26534572 CCAAAATGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
17 9 0.16
18 31 0.54
22 17 0.30
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAAATTTAAATTTAAA
Found at i:26534540 original size:40 final size:40
Alignment explanation
Indices: 26534490--26534565 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
26534480 CATTATTTAG
* *
26534490 AATAATTTTAAATTTAAACATAAATTTAAATTTAAATTTT
1 AATAAATTTAAATTTAAAAATAAATTTAAATTTAAATTTT
26534530 AATAAATTTAAATTTAAAAATAAATTTAAATTTAAA
1 AATAAATTTAAATTTAAAAATAAATTTAAATTTAAA
26534566 ATAAATCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (40 bp):
AATAAATTTAAATTTAAAAATAAATTTAAATTTAAATTTT
Found at i:26538707 original size:24 final size:24
Alignment explanation
Indices: 26538680--26538727 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26538670 CAAGAATATG
*
26538680 AAAGGTTAAAAAAAATGAAAGGTT
1 AAAGGTCAAAAAAAATGAAAGGTT
** *
26538704 AAAGGTCAAGGAAGATGAAAGGTT
1 AAAGGTCAAAAAAAATGAAAGGTT
26538728 GAACATCCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.27, T:0.19
Consensus pattern (24 bp):
AAAGGTCAAAAAAAATGAAAGGTT
Found at i:26541681 original size:18 final size:17
Alignment explanation
Indices: 26541627--26541687 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 17
26541617 ACCTCTTCGT
26541627 CTTCATCCTCGGAATCA
1 CTTCATCCTCGGAATCA
* * *
26541644 TCTTCATCATCAGAACCA
1 -CTTCATCCTCGGAATCA
26541662 CTTCCATCCTCGGAATCA
1 CTT-CATCCTCGGAATCA
26541680 CTATCATC
1 CT-TCATC
26541688 ATCCTCCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 3 0.09
18 31 0.89
19 1 0.03
ACGTcount: A:0.26, C:0.36, G:0.08, T:0.30
Consensus pattern (17 bp):
CTTCATCCTCGGAATCA
Found at i:26543619 original size:11 final size:11
Alignment explanation
Indices: 26543594--26543626 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
26543584 GAAAAATAAC
*
26543594 AAAAC-AAAGA
1 AAAACTAAAAA
26543604 AAAACTAAAAA
1 AAAACTAAAAA
26543615 AAAACTAAAAA
1 AAAACTAAAAA
26543626 A
1 A
26543627 TGAAACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (11 bp):
AAAACTAAAAA
Found at i:26544199 original size:29 final size:29
Alignment explanation
Indices: 26544139--26544198 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
26544129 CTATGGTTTA
* **
26544139 TTGTGTAATTTTATACATGAACTTTGATT
1 TTGTGCAATTTTATACAAAAACTTTGATT
*
26544168 TTGTGCAATTTTATACACAAAATTTTGATT
1 TTGTGCAATTTTATACA-AAAACTTTGATT
26544198 T
1 T
26544199 GATCAAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (29 bp):
TTGTGCAATTTTATACAAAAACTTTGATT
Found at i:26546881 original size:24 final size:24
Alignment explanation
Indices: 26546854--26546912 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
26546844 TTTAGCCAAC
26546854 ACGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
26546878 ACGAACCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
26546902 ACGAGCCCAGA
1 ACGAGCCCAGA
26546913 TAGAGTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (24 bp):
ACGAGCCCAGAATGATTAGCTCTT
Found at i:26548858 original size:52 final size:52
Alignment explanation
Indices: 26548777--26549018 Score: 308
Period size: 52 Copynumber: 4.7 Consensus size: 52
26548767 ATTCCATTTA
* * * * * * *
26548777 ATACTCACGATTACACATAGTCATTGGACCTCTTAAACCGTGAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
* *
26548829 ATACTCA-GAATGACAAATAGTCATCGGACCTTTTAATCCATAAAAGATTCAT
1 ATACTCACG-ATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
* * *
26548881 ATACTCACGATGACACATAGTTATCAGATCC-TTTAATCTATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGA-CCTTTTAATCCATAAAGGATTCAT
* *
26548933 ATATTCACGATGACACATAGTTATCGGACCTTTTAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
* *
26548985 ATACTCACGATGAGACATAGTCATCAGACCTTTT
1 ATACTCACGATGACACATAGTCATCGGACCTTTT
26549019 CTTTATTTAC
Statistics
Matches: 165, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
51 3 0.02
52 159 0.96
53 3 0.02
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
Found at i:26552359 original size:21 final size:24
Alignment explanation
Indices: 26552312--26552359 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
26552302 TTGATAATGC
* *
26552312 TTAAATATGATATACTTTTGGATA
1 TTAAATATGATATACTTTTGAAGA
26552336 TTAAATAT-ATATA-TTTT-AAGA
1 TTAAATATGATATACTTTTGAAGA
26552357 TTA
1 TTA
26552360 TGATCATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 4 0.18
23 5 0.23
24 8 0.36
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (24 bp):
TTAAATATGATATACTTTTGAAGA
Found at i:26552585 original size:19 final size:19
Alignment explanation
Indices: 26552563--26552607 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26552553 TTATATTAGG
26552563 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
26552582 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
26552601 ATTTAAT
1 ATTTAAT
26552608 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:26554639 original size:29 final size:30
Alignment explanation
Indices: 26554587--26554665 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
26554577 TTTGAACCAC
26554587 AATCAAAGTTACATGTATATAATT-ACACTA
1 AATCAAAGTT-CATGTATATAATTCACACTA
* *
26554617 AATCAAAGTTCATGTATCA-AATTGCACATTG
1 AATCAAAGTTCATGTAT-ATAATT-CACACTA
*
26554648 AATCAAAGTTCTTGTATA
1 AATCAAAGTTCATGTATA
26554666 ATTTTAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
29 11 0.26
30 12 0.28
31 20 0.47
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (30 bp):
AATCAAAGTTCATGTATATAATTCACACTA
Found at i:26555711 original size:14 final size:14
Alignment explanation
Indices: 26555693--26555755 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
26555683 TCCCCCATTT
26555693 CCCTTCCCTCTTCC
1 CCCTTCCCTCTTCC
*
26555707 TCCTTTCTCCT-TT-C
1 -CCCTTC-CCTCTTCC
* *
26555721 TCCTTTCC-CTTCC
1 CCCTTCCCTCTTCC
*
26555734 CCCTTCCCCCTTCC
1 CCCTTCCCTCTTCC
26555748 CCCTTCCC
1 CCCTTCCC
26555756 CCTTTTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.11
13 10 0.26
14 14 0.37
15 7 0.18
16 3 0.08
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (14 bp):
CCCTTCCCTCTTCC
Found at i:26555716 original size:7 final size:7
Alignment explanation
Indices: 26555706--26555809 Score: 90
Period size: 7 Copynumber: 15.4 Consensus size: 7
26555696 TTCCCTCTTC
26555706 CTCCTTT
1 CTCCTTT
26555713 CTCCTTT
1 CTCCTTT
26555720 CTCCTTT
1 CTCCTTT
*
26555727 C-CCTTC
1 CTCCTTT
* *
26555733 CCCCTTC
1 CTCCTTT
* *
26555740 CCCCTTC
1 CTCCTTT
* *
26555747 CCCCTTC
1 CTCCTTT
*
26555754 CCCCTTT
1 CTCCTTT
*
26555761 TTCCTTT
1 CTCCTTT
26555768 CTCCTTT
1 CTCCTTT
26555775 C-CCTTT
1 CTCCTTT
26555781 C-CCTTT
1 CTCCTTT
*
26555787 CCCCTTT
1 CTCCTTT
26555794 CTCCTTT
1 CTCCTTT
26555801 C-CCTTT
1 CTCCTTT
26555807 CTC
1 CTC
26555810 ATTTTCAATT
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
6 23 0.26
7 65 0.74
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (7 bp):
CTCCTTT
Done.