Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 122 of 144
Found at i:28807914 original size:17 final size:17
Alignment explanation
Indices: 28807894--28807932 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
28807884 AACATATCGT
28807894 TTAATTTACATGCTAAC
1 TTAATTTACATGCTAAC
28807911 TTAATTTACATGCTAAC
1 TTAATTTACATGCTAAC
28807928 TTAAT
1 TTAAT
28807933 ATCAACGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (17 bp):
TTAATTTACATGCTAAC
Found at i:28808262 original size:3 final size:3
Alignment explanation
Indices: 28808242--28808276 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
28808232 ACATTAAGTC
* *
28808242 TTA TTA GTA TTG TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
28808277 TCAGCAATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:28808893 original size:23 final size:24
Alignment explanation
Indices: 28808835--28808896 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
28808825 TCATTTACTA
28808835 AAATATAATAAAAGAATAAAAAAAT
1 AAATATAA-AAAAGAATAAAAAAAT
* * *
28808860 ATTACTTTAAAAAAGGA-AAAAAAAT
1 A--AATATAAAAAAGAATAAAAAAAT
28808885 AAATATAAAAAA
1 AAATATAAAAAA
28808897 ATAAAACATG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
23 9 0.30
25 10 0.33
26 6 0.20
27 5 0.17
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.21
Consensus pattern (24 bp):
AAATATAAAAAAGAATAAAAAAAT
Found at i:28809602 original size:9 final size:9
Alignment explanation
Indices: 28809582--28809624 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
28809572 ATTTAATTAC
28809582 TTTTAT-AT
1 TTTTATAAT
28809590 TTTTATAAT
1 TTTTATAAT
*
28809599 TTTTAAATAT
1 TTTTATA-AT
28809609 TTTTAATAAT
1 TTTT-ATAAT
28809619 TTTTAT
1 TTTTAT
28809625 TTTGAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 6 0.20
9 10 0.33
10 12 0.40
11 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTATAAT
Found at i:28809800 original size:21 final size:22
Alignment explanation
Indices: 28809767--28809810 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
28809757 ATGATCCGAC
28809767 AAAAAATATAAATAAAAAAATG
1 AAAAAATATAAATAAAAAAATG
**
28809789 AAAAAATA-AAATATTAAAATG
1 AAAAAATATAAATAAAAAAATG
28809810 A
1 A
28809811 CTTTTTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAAAATATAAATAAAAAAATG
Found at i:28809916 original size:15 final size:16
Alignment explanation
Indices: 28809885--28809918 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
28809875 AATACTTTCA
28809885 TAATATCTTATATAAT
1 TAATATCTTATATAAT
*
28809901 TAATATTTTA-ATAAT
1 TAATATCTTATATAAT
28809916 TAA
1 TAA
28809919 ACTTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATATCTTATATAAT
Found at i:28810181 original size:23 final size:24
Alignment explanation
Indices: 28810155--28810201 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
28810145 CCTTTGCACC
*
28810155 TAATTTAAAA-ATCTTAAAATTAA
1 TAATTCAAAATATCTTAAAATTAA
28810178 TAATTCAAAATATCTTAAAATTAA
1 TAATTCAAAATATCTTAAAATTAA
28810202 AAAAAGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (24 bp):
TAATTCAAAATATCTTAAAATTAA
Found at i:28810492 original size:17 final size:17
Alignment explanation
Indices: 28810470--28810511 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
28810460 TTTTTTATAT
*
28810470 ATTTTTAATAATATT-TA
1 ATTTTTAATAA-ATTGGA
28810487 ATTTTTAA-AAATTGGA
1 ATTTTTAATAAATTGGA
28810503 ATTTTTAAT
1 ATTTTTAAT
28810512 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 11 0.50
17 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
ATTTTTAATAAATTGGA
Found at i:28814975 original size:15 final size:17
Alignment explanation
Indices: 28814932--28814969 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
28814922 CTCCACCTTG
*
28814932 ACAAGAATTCTCTACGA
1 ACAAGAATTCTCAACGA
*
28814949 ACAAGAACTCTCAACGA
1 ACAAGAATTCTCAACGA
28814966 ACAA
1 ACAA
28814970 ATTCTCCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.11, T:0.16
Consensus pattern (17 bp):
ACAAGAATTCTCAACGA
Found at i:28820145 original size:27 final size:28
Alignment explanation
Indices: 28820088--28820145 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
28820078 AACATAACAA
*
28820088 TTTATGTACATTTCATGCTTTTTTATTT
1 TTTATGAACATTTCATGCTTTTTTATTT
*
28820116 TTTATGAACATTTTATAG-TTTTTT-TTT
1 TTTATGAACATTTCAT-GCTTTTTTATTT
28820143 TTT
1 TTT
28820146 GGATTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 6 0.22
28 20 0.74
29 1 0.04
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (28 bp):
TTTATGAACATTTCATGCTTTTTTATTT
Found at i:28820151 original size:23 final size:24
Alignment explanation
Indices: 28820125--28820170 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
28820115 TTTTATGAAC
* *
28820125 ATTTTATAGTTTTT-TTTTTTTGG
1 ATTTTAAAGTTTTTAATTTTTTGG
28820148 ATTTTAAAGTTTTTAATTTTTTG
1 ATTTTAAAGTTTTTAATTTTTTG
28820171 AATATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.70
Consensus pattern (24 bp):
ATTTTAAAGTTTTTAATTTTTTGG
Found at i:28824874 original size:19 final size:19
Alignment explanation
Indices: 28824852--28824911 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 19
28824842 TTTTTATTTC
28824852 AATTTTTATAATTTTAAAT
1 AATTTTTATAATTTTAAAT
28824871 AATTTTTAAATAATTATT-AAT
1 AATTTTT--ATAATT-TTAAAT
*
28824892 ATTTTTTATAATTTCTAAAT
1 AATTTTTATAATTT-TAAAT
28824912 TTTTATACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
18 1 0.03
19 14 0.40
20 3 0.09
21 15 0.43
22 2 0.06
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTTTTATAATTTTAAAT
Found at i:28824879 original size:11 final size:11
Alignment explanation
Indices: 28824859--28824911 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
28824849 TTCAATTTTT
28824859 ATAA-TTTTAA
1 ATAATTTTTAA
28824869 ATAATTTTTAA
1 ATAATTTTTAA
*
28824880 ATAATTATT-A
1 ATAATTTTTAA
*
28824890 AT-ATTTTT-T
1 ATAATTTTTAA
*
28824899 ATAATTTCTAA
1 ATAATTTTTAA
28824910 AT
1 AT
28824912 TTTTATACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 7 0.20
10 12 0.34
11 16 0.46
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (11 bp):
ATAATTTTTAA
Found at i:28824915 original size:19 final size:19
Alignment explanation
Indices: 28824854--28824915 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
28824844 TTTATTTCAA
28824854 TTTTTATAATTTTAAATAAT
1 TTTTTATAATTTTAAAT-AT
*
28824874 TTTTAAATAATTATT-AATAT
1 TTTT-TATAATT-TTAAATAT
28824894 TTTTTATAATTTCTAAAT-T
1 TTTTTATAATTT-TAAATAT
28824913 TTT
1 TTT
28824916 ATACTTTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 13 0.36
21 9 0.25
22 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTATAATTTTAAATAT
Found at i:28825183 original size:20 final size:21
Alignment explanation
Indices: 28825142--28825187 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
28825132 TTTTCTGTTA
*
28825142 TTAATGATTCAATGTATTTTT
1 TTAATGATTAAATGTATTTTT
*
28825163 TTAATGATTAAAT-TGTTTTT
1 TTAATGATTAAATGTATTTTT
28825183 TTAAT
1 TTAAT
28825188 AAGGGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (21 bp):
TTAATGATTAAATGTATTTTT
Found at i:28825262 original size:20 final size:20
Alignment explanation
Indices: 28825223--28825262 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
28825213 TTTTAATAAT
*
28825223 ATTAAAAAATTTAAATCATA
1 ATTAAAAAATTTAAACCATA
* *
28825243 ATTAAAATATTTATACCATA
1 ATTAAAAAATTTAAACCATA
28825263 TTCAATATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTAAAAAATTTAAACCATA
Found at i:28838243 original size:28 final size:29
Alignment explanation
Indices: 28838207--28838266 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
28838197 TTCATATTTA
*
28838207 ATTATTTATA-TTTAATAATTTAGTAAATT
1 ATTATTTATAGTTT-ATAATTTAATAAATT
**
28838236 ATTA-TTATAGTTTATTTTTTAATAAATT
1 ATTATTTATAGTTTATAATTTAATAAATT
28838264 ATT
1 ATT
28838267 TAATTTTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
ATTATTTATAGTTTATAATTTAATAAATT
Found at i:28838314 original size:15 final size:16
Alignment explanation
Indices: 28838287--28838316 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
28838277 ATTTTATTTT
28838287 AATAATAAATTTTAAC
1 AATAATAAATTTTAAC
28838303 AATAAT-AATTTTAA
1 AATAATAAATTTTAA
28838317 ATTTTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAATAAATTTTAAC
Found at i:28842578 original size:12 final size:12
Alignment explanation
Indices: 28842563--28842610 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
28842553 AAACGAGTTA
28842563 ATAAATGAGCTT
1 ATAAATGAGCTT
* **
28842575 ATAAACGAGCCA
1 ATAAATGAGCTT
*
28842587 ATAAATGTGCTT
1 ATAAATGAGCTT
*
28842599 TTAAATGAGCTT
1 ATAAATGAGCTT
28842611 GTTCGTGAAC
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (12 bp):
ATAAATGAGCTT
Found at i:28842583 original size:24 final size:24
Alignment explanation
Indices: 28842551--28842608 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
28842541 TAAACAAATC
**
28842551 ATAAACGAGTTAATAAATGAGCTT
1 ATAAACGAGCCAATAAATGAGCTT
*
28842575 ATAAACGAGCCAATAAATGTGCTT
1 ATAAACGAGCCAATAAATGAGCTT
* *
28842599 TTAAATGAGC
1 ATAAACGAGC
28842609 TTGTTCGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (24 bp):
ATAAACGAGCCAATAAATGAGCTT
Found at i:28845465 original size:92 final size:92
Alignment explanation
Indices: 28845360--28845543 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
28845350 AGCAATCCTT
*
28845360 TTCTTCGCCTTTATTTACTTTGTTAGGATTGAGCTCTGATTAGAGATTTTGTTTTGGGTTTAATT
1 TTCTTCGCCTTTATTTACTTTGTTAGGATTGAGCTCTGATTAGAGACTTTGTTTTGGGTTTAATT
28845425 GTTGATTCATCTTTTTTCTATTATTTC
66 GTTGATTCATCTTTTTTCTATTATTTC
28845452 TTCTTCGCCTTTATTTACTTTGTTAGGATTGAGCTCTGATTAGAGACTTTGTTTTGGGTTTAATT
1 TTCTTCGCCTTTATTTACTTTGTTAGGATTGAGCTCTGATTAGAGACTTTGTTTTGGGTTTAATT
28845517 GTTGATTCATCTTTTTTCTATTATTTC
66 GTTGATTCATCTTTTTTCTATTATTTC
28845544 CTGGCAGCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.55
Consensus pattern (92 bp):
TTCTTCGCCTTTATTTACTTTGTTAGGATTGAGCTCTGATTAGAGACTTTGTTTTGGGTTTAATT
GTTGATTCATCTTTTTTCTATTATTTC
Found at i:28851634 original size:20 final size:22
Alignment explanation
Indices: 28851600--28851644 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
28851590 GTAATTCAAT
28851600 TTTAAAATATTAAAT-GATTTA
1 TTTAAAATATTAAATCGATTTA
*
28851621 TTTAAAAT-TTAAATCTATTTA
1 TTTAAAATATTAAATCGATTTA
28851642 TTT
1 TTT
28851645 TAATTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAAAATATTAAATCGATTTA
Found at i:28858791 original size:16 final size:19
Alignment explanation
Indices: 28858762--28858800 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
28858752 TATGTTTTAA
28858762 ATTACATTATATATAAA-T
1 ATTACATTATATATAAAGT
28858780 ATTACA-TA-ATATAAAGT
1 ATTACATTATATATAAAGT
28858797 ATTA
1 ATTA
28858801 TAAACTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 7 0.35
18 6 0.30
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTACATTATATATAAAGT
Found at i:28863426 original size:23 final size:21
Alignment explanation
Indices: 28863410--28863450 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
28863400 TCATCTATGT
28863410 AATTAAAATATAATCATTATA
1 AATTAAAATATAATCATTATA
* *
28863431 AATTTAAATAT-ATAATTATA
1 AATTAAAATATAATCATTATA
28863451 TATATCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTAAAATATAATCATTATA
Found at i:28877965 original size:17 final size:17
Alignment explanation
Indices: 28877921--28877967 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
28877911 CAGGGGTGGT
28877921 GAAAGGGAGAG-GAAGA
1 GAAAGGGAGAGAGAAGA
*
28877937 GAAAGAGA-AGAGAGAGA
1 GAAAGGGAGAGAGA-AGA
28877954 GAAAAGGGAGAGAG
1 G-AAAGGGAGAGAG
28877968 GGTTTAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 2 0.08
16 9 0.36
17 4 0.16
18 6 0.24
19 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (17 bp):
GAAAGGGAGAGAGAAGA
Found at i:28882710 original size:274 final size:279
Alignment explanation
Indices: 28882186--28882739 Score: 931
Period size: 274 Copynumber: 2.0 Consensus size: 279
28882176 TAACAGTGGG
28882186 GTTAAGTAGTGTTGTAACAATCATTTAAGTTAGGAATTTTATGCTTCTATTTACAATGTATCTCC
1 GTTAAGTAGTGTTGTAACAATCATTTAAGTTAGGAATTTTATGCTTCTATTTACAATGTATCTCC
* *
28882251 CAATATATCAGAACCGAGAATTTAGGTTATAAGTCTCAAGAAGTGAAAAAGACAAGGTATATCCA
66 CAATATATCAGAACCGAGAATTTAGGTTAGAAG-CTCAAGAA--GAAAAAGACAAGGCATATCCA
* *
28882316 GTAAGATATTTTCCATCAGATTTCAAAACATGATGAATAATAATTTTTCTGAAATTAGTGTCGTT
128 GTAAGATATTTTCCATCAGATTTCAAAACATGATGAATAAGAATTTTTCTGAAATTAGTGTCATT
28882381 TTCATTAAAAAACTAAAGATGCTAATCACTAGATAAGCTAATATACAGGAAAGAAAATGTACCCG
193 TTCATTAAAAAACTAAAGATGCTAATCACTAGATAAGCTAATATACAGGAAAGAAAATGTACCCG
28882446 AACCAATTCGATAAATTTTTAT
258 AACCAATTCGATAAATTTTTAT
*
28882468 GTTAGGTAGTGTTGTAACAATCATTTAAGTTAGGAA-TTTATGCTTCTATTTACAATGTATCTCC
1 GTTAAGTAGTGTTGTAACAATCATTTAAGTTAGGAATTTTATGCTTCTATTTACAATGTATCTCC
* * * *
28882532 CAATATATCAGAACTGAGAATTTAGGTTAGAAG-TGAA-AA-AGACA-ACAAGGCATATCCAGTA
66 CAATATATCAGAACCGAGAATTTAGGTTAGAAGCTCAAGAAGAAAAAGACAAGGCATATCCAGTA
*
28882593 AGATA-TTTCCATCAGATTTCAAAACATGATGAATAAGAATTTTTCTGTAATTAGTGTCATTTTC
131 AGATATTTTCCATCAGATTTCAAAACATGATGAATAAGAATTTTTCTGAAATTAGTGTCATTTTC
*
28882657 ATTAAAAAAACTAAAGATGCTAATCACTAGATAAGCTAATATACAGTAAAGAAAATGTACCCGAA
196 ATT-AAAAAACTAAAGATGCTAATCACTAGATAAGCTAATATACAGGAAAGAAAATGTACCCGAA
28882722 CCAATTCGATAAATTTTT
260 CCAATTCGATAAATTTTT
28882740 GGCAGTGCAG
Statistics
Matches: 260, Mismatches: 11, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
273 59 0.23
274 99 0.38
275 3 0.01
278 2 0.01
279 3 0.01
281 59 0.23
282 35 0.13
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (279 bp):
GTTAAGTAGTGTTGTAACAATCATTTAAGTTAGGAATTTTATGCTTCTATTTACAATGTATCTCC
CAATATATCAGAACCGAGAATTTAGGTTAGAAGCTCAAGAAGAAAAAGACAAGGCATATCCAGTA
AGATATTTTCCATCAGATTTCAAAACATGATGAATAAGAATTTTTCTGAAATTAGTGTCATTTTC
ATTAAAAAACTAAAGATGCTAATCACTAGATAAGCTAATATACAGGAAAGAAAATGTACCCGAAC
CAATTCGATAAATTTTTAT
Found at i:28889466 original size:34 final size:34
Alignment explanation
Indices: 28889395--28889459 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 34
28889385 AGAATTTCTC
**
28889395 TATTTTCTAAATTTTAAAATTCGACTTTAATTAT
1 TATTTTCTAAATTTTAAAATTCGACACTAATTAT
28889429 TATTTT-T-AATTTTAAAATATC-ACACTAATTA
1 TATTTTCTAAATTTTAAAAT-TCGACACTAATTA
28889460 ATTTATTCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 19 0.68
33 3 0.11
34 6 0.21
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (34 bp):
TATTTTCTAAATTTTAAAATTCGACACTAATTAT
Found at i:28889639 original size:21 final size:21
Alignment explanation
Indices: 28889592--28889639 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
28889582 TAAATACCAT
*
28889592 TATAAAATTTAAACATTTATA
1 TATATAATTTAAACATTTATA
* *
28889613 TCTATAATTTATA-ATTTATA
1 TATATAATTTAAACATTTATA
28889633 TAATATA
1 T-ATATA
28889640 TATAAGTAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
TATATAATTTAAACATTTATA
Found at i:28893941 original size:15 final size:15
Alignment explanation
Indices: 28893913--28893953 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
28893903 CATTAATTTT
*
28893913 AAAA-ATTTTGTTAA
1 AAAATATTTTTTTAA
28893927 AAAATATTTTTTTAA
1 AAAATATTTTTTTAA
28893942 AATAAT-TTTTTT
1 AA-AATATTTTTT
28893954 GAATATTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.71
16 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
AAAATATTTTTTTAA
Found at i:28894583 original size:17 final size:18
Alignment explanation
Indices: 28894563--28894599 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
28894553 TAGTAAAAAT
28894563 ATAA-TTATATTATTT-TA
1 ATAATTTATA-TATTTATA
28894580 ATAATTTATATATTTATA
1 ATAATTTATATATTTATA
28894598 AT
1 AT
28894600 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATAATTTATATATTTATA
Found at i:28894639 original size:24 final size:21
Alignment explanation
Indices: 28894596--28894647 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 21
28894586 TATATATTTA
28894596 TAATTTTTAAAAAATTAAAT-
1 TAATTTTTAAAAAATTAAATG
28894616 TAAATTTTTATTAAAAATTAAAATG
1 T-AATTTTTA--AAAAATT-AAATG
28894641 TAATTTT
1 TAATTTT
28894648 ATTTTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.04
21 8 0.30
23 7 0.26
24 10 0.37
25 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TAATTTTTAAAAAATTAAATG
Found at i:28894647 original size:23 final size:21
Alignment explanation
Indices: 28894596--28894650 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
28894586 TATATATTTA
*
28894596 TAATTTT-TAAAAAATTAAAT
1 TAATTTTATTAAAAATTAAAT
28894616 TAAATTTTTATTAAAAATTAAAAT
1 T-AA-TTTTATTAAAAATT-AAAT
28894640 GTAATTTTATT
1 -TAATTTTATT
28894651 TTTATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.03
21 2 0.07
22 4 0.14
23 15 0.52
24 6 0.21
25 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TAATTTTATTAAAAATTAAAT
Found at i:28899053 original size:21 final size:20
Alignment explanation
Indices: 28899009--28899058 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
28898999 GGGCTTGAAT
* *
28899009 AATATTATTTTATAAATTATA
1 AATA-TATTTTAAAAATTAAA
*
28899030 AATGTATTTTAAATAATTAAA
1 AATATATTTTAAA-AATTAAA
28899051 AATATATT
1 AATATATT
28899059 AAATTAATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
AATATATTTTAAAAATTAAA
Found at i:28912260 original size:16 final size:16
Alignment explanation
Indices: 28912236--28912266 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
28912226 TAAAACATTA
*
28912236 TTTTGATATTTTTATC
1 TTTTAATATTTTTATC
28912252 TTTTAATATTTTTAT
1 TTTTAATATTTTTAT
28912267 ATAATCTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTAATATTTTTATC
Found at i:28939280 original size:21 final size:20
Alignment explanation
Indices: 28939252--28939291 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
28939242 TAGTTATCTT
28939252 AAATTTAA-ATTAAATAATAA
1 AAATTTAAGA-TAAATAATAA
28939272 AAATGTTAAGATAAATAATA
1 AAAT-TTAAGATAAATAATA
28939292 TATTTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 13 0.72
22 1 0.06
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATTTAAGATAAATAATAA
Found at i:28942721 original size:15 final size:15
Alignment explanation
Indices: 28942689--28942733 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
28942679 AGAACCATTC
* *
28942689 AGGGAAGGAAAGGGA
1 AGGGAAGGTAAGGTA
*
28942704 AGGGAAGGTATGGTA
1 AGGGAAGGTAAGGTA
*
28942719 AGGTAAGGTAAGGTA
1 AGGGAAGGTAAGGTA
28942734 CGGAACGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.47, T:0.13
Consensus pattern (15 bp):
AGGGAAGGTAAGGTA
Found at i:28942764 original size:28 final size:27
Alignment explanation
Indices: 28942735--28942810 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 27
28942725 GGTAAGGTAC
28942735 GGAACGGAACGGAATTTGTC--A--AA
1 GGAACGGAACGGAATTTGTCAAAGGAA
28942758 GGAACGGAACGGAATTTGTCAAAGGAA
1 GGAACGGAACGGAATTTGTCAAAGGAA
*
28942785 TGGAA-GAGAATGGAATTTGTCAAAGG
1 -GGAACG-GAACGGAATTTGTCAAAGG
28942811 TGATGAGAAG
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
23 20 0.43
25 1 0.02
27 3 0.07
28 22 0.48
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.18
Consensus pattern (27 bp):
GGAACGGAACGGAATTTGTCAAAGGAA
Found at i:28942795 original size:23 final size:23
Alignment explanation
Indices: 28942735--28942789 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
28942725 GGTAAGGTAC
28942735 GGAACGGAACGGAATTTGTCAAA
1 GGAACGGAACGGAATTTGTCAAA
28942758 GGAACGGAACGGAATTTGTCAAA
1 GGAACGGAACGGAATTTGTCAAA
*
28942781 GGAATGGAA
1 GGAACGGAA
28942790 GAGAATGGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.11, G:0.33, T:0.16
Consensus pattern (23 bp):
GGAACGGAACGGAATTTGTCAAA
Found at i:28942972 original size:100 final size:100
Alignment explanation
Indices: 28942799--28942992 Score: 370
Period size: 100 Copynumber: 1.9 Consensus size: 100
28942789 AGAGAATGGA
28942799 ATTTGTCAAAGGTGATGAGAAGTTTAGCTTGAATTATTGCATGAATAATAAATAAGCAGAGGTGG
1 ATTTGTCAAAGGTGATGAGAAGTTTAGCTTGAATTATTGCATGAATAATAAATAAGCAGAGGTGG
*
28942864 GAATAAAACACATGCCTTATTTGAAGCTTCTACTT
66 GAATAAAACACATACCTTATTTGAAGCTTCTACTT
*
28942899 ATTTGTCAAAGGTGATGAGAAGTTTAGCTTGAATTATTGCATGAATAATAAATAATCAGAGGTGG
1 ATTTGTCAAAGGTGATGAGAAGTTTAGCTTGAATTATTGCATGAATAATAAATAAGCAGAGGTGG
28942964 GAATAAAACACATACCTTATTTGAAGCTT
66 GAATAAAACACATACCTTATTTGAAGCTT
28942993 TATTTTGGAC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (100 bp):
ATTTGTCAAAGGTGATGAGAAGTTTAGCTTGAATTATTGCATGAATAATAAATAAGCAGAGGTGG
GAATAAAACACATACCTTATTTGAAGCTTCTACTT
Found at i:28944360 original size:48 final size:48
Alignment explanation
Indices: 28944302--28944395 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
28944292 CAATGAAATT
28944302 AAAGGCTACCACATATTGTTTGTTGAGCATCTTTAAGGCCCTCAGATC
1 AAAGGCTACCACATATTGTTTGTTGAGCATCTTTAAGGCCCTCAGATC
* *
28944350 AAAGGTTACCACATATTGTTTGTTGAGCATCTTTAAGGCTCTCAGA
1 AAAGGCTACCACATATTGTTTGTTGAGCATCTTTAAGGCCCTCAGA
28944396 AGCAATCGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (48 bp):
AAAGGCTACCACATATTGTTTGTTGAGCATCTTTAAGGCCCTCAGATC
Found at i:28952755 original size:23 final size:24
Alignment explanation
Indices: 28952710--28952755 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
28952700 CTTTTCTTTA
*
28952710 GGTTTATATTTTTTTTATCAATTT
1 GGTTTATATTTTTTTTATAAATTT
28952734 GGTTT-TATTTTATTTT-TAAATT
1 GGTTTATATTTT-TTTTATAAATT
28952756 GTTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (24 bp):
GGTTTATATTTTTTTTATAAATTT
Found at i:28971707 original size:29 final size:29
Alignment explanation
Indices: 28971673--28971732 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
28971663 AATTTTTTGA
28971673 TATTTTGTATATTTA-AAATTT-CATCTTTT
1 TATTTT-TATATTTAGAAATTTAC-TCTTTT
*
28971702 TATTTTTATTTTTAGAAATTTACTCTTTT
1 TATTTTTATATTTAGAAATTTACTCTTTT
28971731 TA
1 TA
28971733 CTTTCTCGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 7 0.25
29 20 0.71
30 1 0.04
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (29 bp):
TATTTTTATATTTAGAAATTTACTCTTTT
Found at i:28977158 original size:18 final size:18
Alignment explanation
Indices: 28977118--28977172 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
28977108 GGTTTCCATT
*
28977118 TAATTTTAA-TAAATAAA
1 TAATTTTAATTAATTAAA
*
28977135 TAAATTTTAATTAATTAAC
1 T-AATTTTAATTAATTAAA
* *
28977154 TAATTATGATTAATTAAA
1 TAATTTTAATTAATTAAA
28977172 T
1 T
28977173 TAACTAAAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 1 0.03
18 23 0.74
19 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TAATTTTAATTAATTAAA
Found at i:28983181 original size:66 final size:66
Alignment explanation
Indices: 28983075--28983210 Score: 265
Period size: 66 Copynumber: 2.1 Consensus size: 66
28983065 ACTGAGTAAG
28983075 GATTTTTCGGATGATCGAATAGTGCAAAAAATTATTGTTACTTTGCCTTAAAAATATGAGTATAA
1 GATTTTTCGGATGATCGAATAGTGCAAAAAATTATTGTTACTTTGCCTTAAAAATATGAGTATAA
28983140 A
66 A
28983141 GATTTTTCGGATGATCGAATAGTGCAAAAAATTATTGTTACTTTGCCTTAAAAATATGAGTATAA
1 GATTTTTCGGATGATCGAATAGTGCAAAAAATTATTGTTACTTTGCCTTAAAAATATGAGTATAA
28983206 A
66 A
28983207 -ATTT
1 GATTT
28983211 CTTCATTAGA
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 4 0.06
66 66 0.94
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (66 bp):
GATTTTTCGGATGATCGAATAGTGCAAAAAATTATTGTTACTTTGCCTTAAAAATATGAGTATAA
A
Found at i:28985438 original size:14 final size:13
Alignment explanation
Indices: 28985402--28985440 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
28985392 CAAAAAAATA
*
28985402 ATATAATATTAAT
1 ATATAATATTTAT
28985415 AT-TAATATTTAT
1 ATATAATATTTAT
28985427 ATATATATATTTAT
1 ATATA-ATATTTAT
28985441 TAAACTGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 11 0.48
13 4 0.17
14 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATAATATTTAT
Found at i:28989099 original size:1 final size:1
Alignment explanation
Indices: 28989095--28989123 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
28989085 AAATGATGTT
28989095 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
28989124 AATGTATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:28989821 original size:25 final size:23
Alignment explanation
Indices: 28989776--28989824 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
28989766 GTATTCACAA
28989776 TTTTTACTTTGAATAAATTATTT
1 TTTTTACTTTGAATAAATTATTT
* *
28989799 TTTTTACATTTTAGATAATTTATTT
1 TTTTTAC-TTTGA-ATAAATTATTT
28989824 T
1 T
28989825 AAACATAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 4 0.18
25 11 0.50
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTTACTTTGAATAAATTATTT
Found at i:28990192 original size:28 final size:28
Alignment explanation
Indices: 28990149--28990204 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
28990139 GTATTATTGT
*
28990149 TTTTTATCTTAATATTAAAATTACATTAC
1 TTTTTATCTTAATATTAAAAATA-ATTAC
*
28990178 TTTTTAT-TTATTATTAAAAATAATTAC
1 TTTTTATCTTAATATTAAAAATAATTAC
28990205 ACTGACAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.20
28 13 0.52
29 7 0.28
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (28 bp):
TTTTTATCTTAATATTAAAAATAATTAC
Found at i:28994291 original size:29 final size:30
Alignment explanation
Indices: 28994244--28994300 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
28994234 GAATTGAATC
*
28994244 AAATCAAAATTTCATGTATACAATTGCACA
1 AAATCAAAAGTTCATGTATACAATTGCACA
* *
28994274 AAATC-AAAGTTCCTGTATATAATTGCA
1 AAATCAAAAGTTCATGTATACAATTGCA
28994301 TATTAAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.32
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATACAATTGCACA
Found at i:29007564 original size:402 final size:396
Alignment explanation
Indices: 29006826--29007629 Score: 1457
Period size: 402 Copynumber: 2.0 Consensus size: 396
29006816 GAAGTTGGGA
*
29006826 GAAAATAGCAAGACCATCTTTCCAGAGGCTGTCACAGAAGCAATCTCTGTCTCTGAAGGAGAGAA
1 GAAAATAGCAAGACCATCCTTCCAGAGGCTGTCACAGAAGCAATCTCTGTCTCTGAAGGAGAGAA
29006891 TTCAGAGAGAGACACTGAGAACATGGATCCTTCAGTTGTAAAAGAAGTTGAAAACAGAAGATCAA
66 TTCAGAGAGAGACACTGAGAACATGGATCCTTCAGTTGTAAAAGAAGTTGAAAACAGAAGATCAA
*
29006956 TACAAGAAAGCCAACTTCACCTTATGGAACCAACTTTGGAAGAGGAGGATATATTGTTGAATAAT
131 TACAAGAAAGCCAACTTCACCTGATGGAACCAACTTTGGAAGAGGAGGATATATTGTTGAATAAT
*
29007021 GTAATGGAGTGTGATGAAGAAAGCCAGATTCCCAAACCGCTTTCTGCTTTGAGACCAACGGAGGA
196 GTAATGGAGTGTGATGAAGAAAGCCAGATTCCCAAACCGCTTTCTGCTTTGAAACCAACGGAGGA
* *
29007086 AAGGAACCTGAATGGAAAGGTTGAGGAACCTGAAGACTATGAGAGCGGAAATACAAGTTTTTGTT
261 AAGGAACCTGAATGGAAAGGTTGAGGAACCTGAAGACTATGAGAGCGAAAATACAAGGTTTTGTT
* **
29007151 CTGCTTCTCTCATGAGGGAATCAGTCAACTCACCTTTGCCCGTTGCTCCTGCACTGCTGTCATCT
326 ATGCTTCTCTCATGAGGGAATCAGTCAACTCACCTTTGCCCACTGCTCCTGCACTGCTGTCATCT
29007216 GATTAT
391 GATTAT
29007222 GAAAATAGCAAGACCATCCTTCCAGAGGCTGTCACAGAAGCAATCTCTGTCTCTGAAGGAGAGAA
1 GAAAATAGCAAGACCATCCTTCCAGAGGCTGTCACAGAAGCAATCTCTGTCTCTGAAGGAGAGAA
29007287 TTCAGAGAGATACTCAGACACTGAGAACATGGATCCTTCAGTTGTAAAAGAAGTTGAAAACAGAA
66 TTCAGAGAG------AGACACTGAGAACATGGATCCTTCAGTTGTAAAAGAAGTTGAAAACAGAA
29007352 GATCAATACAAGAAAGCCAACTTCACCTGATGGAACCAACTTTGGAAGAGGAGGATATATTGTTG
125 GATCAATACAAGAAAGCCAACTTCACCTGATGGAACCAACTTTGGAAGAGGAGGATATATTGTTG
29007417 AATAATGTAATGGAGTGTGATGAAGAAAGCCAGATTCCCAAACCGCTTTCTGCTTTGAAACCAAC
190 AATAATGTAATGGAGTGTGATGAAGAAAGCCAGATTCCCAAACCGCTTTCTGCTTTGAAACCAAC
29007482 GGAGGAAAGGAACCTGAATGGAAAGGTTGAGCG-ACCTGAAGACTATGAGAGCGAAAATACAAGG
255 GGAGGAAAGGAACCTGAATGGAAAGGTTGAG-GAACCTGAAGACTATGAGAGCGAAAATACAAGG
29007546 TTTTGTTATGCTTCTCTCATGAGGGAATCAGTCAACTCACCTTTGCCCACTGCTCCTGCACTGCT
319 TTTTGTTATGCTTCTCTCATGAGGGAATCAGTCAACTCACCTTTGCCCACTGCTCCTGCACTGCT
*
29007611 GTCGTCTGATTAT
384 GTCATCTGATTAT
29007624 GAAAAT
1 GAAAAT
29007630 TTAGACAGCT
Statistics
Matches: 392, Mismatches: 9, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
396 73 0.19
402 318 0.81
403 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (396 bp):
GAAAATAGCAAGACCATCCTTCCAGAGGCTGTCACAGAAGCAATCTCTGTCTCTGAAGGAGAGAA
TTCAGAGAGAGACACTGAGAACATGGATCCTTCAGTTGTAAAAGAAGTTGAAAACAGAAGATCAA
TACAAGAAAGCCAACTTCACCTGATGGAACCAACTTTGGAAGAGGAGGATATATTGTTGAATAAT
GTAATGGAGTGTGATGAAGAAAGCCAGATTCCCAAACCGCTTTCTGCTTTGAAACCAACGGAGGA
AAGGAACCTGAATGGAAAGGTTGAGGAACCTGAAGACTATGAGAGCGAAAATACAAGGTTTTGTT
ATGCTTCTCTCATGAGGGAATCAGTCAACTCACCTTTGCCCACTGCTCCTGCACTGCTGTCATCT
GATTAT
Found at i:29020173 original size:12 final size:12
Alignment explanation
Indices: 29020156--29020189 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
29020146 GGGGAGGAGA
*
29020156 AAAGAGAAAGAG
1 AAAGAGAAAAAG
29020168 AAAGAGAAAAAG
1 AAAGAGAAAAAG
*
29020180 AAAAAGAAAA
1 AAAGAGAAAA
29020190 GGATGGGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGAGAAAAAG
Found at i:29020187 original size:18 final size:19
Alignment explanation
Indices: 29020152--29020188 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
29020142 GGGAGGGGAG
*
29020152 GAGAAAAGAGAAAGAGAAA
1 GAGAAAAGAGAAAAAGAAA
29020171 GAGAAAA-AGAAAAAGAAA
1 GAGAAAAGAGAAAAAGAAA
29020189 AGGATGGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (19 bp):
GAGAAAAGAGAAAAAGAAA
Found at i:29020303 original size:6 final size:6
Alignment explanation
Indices: 29020292--29020316 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
29020282 CACCACAGAT
29020292 AGACTG AGACTG AGACTG AGACTG A
1 AGACTG AGACTG AGACTG AGACTG A
29020317 TGACAGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (6 bp):
AGACTG
Found at i:29022620 original size:24 final size:24
Alignment explanation
Indices: 29022586--29022641 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
29022576 ATTTGAGAAA
29022586 TAATT-TTTCAATTAAA-TTCTGTT
1 TAATTGTTTCAATTAAACTT-TGTT
29022609 TAATTGTTTCAATTAAACTTTGTT
1 TAATTGTTTCAATTAAACTTTGTT
*
29022633 TATTTGTTT
1 TAATTGTTT
29022642 GAGTCAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 5 0.17
24 23 0.77
25 2 0.07
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (24 bp):
TAATTGTTTCAATTAAACTTTGTT
Found at i:29022650 original size:24 final size:24
Alignment explanation
Indices: 29022586--29022651 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
29022576 ATTTGAGAAA
*
29022586 TAATT-TTTCAATTAAA-TTCTGTT
1 TAATTGTTTCAATCAAACTT-TGTT
*
29022609 TAATTGTTTCAATTAAACTTTGTT
1 TAATTGTTTCAATCAAACTTTGTT
* * *
29022633 TATTTGTTTGAGTCAAACT
1 TAATTGTTTCAATCAAACT
29022652 CTTATTATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 5 0.14
24 30 0.81
25 2 0.05
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (24 bp):
TAATTGTTTCAATCAAACTTTGTT
Found at i:29026775 original size:22 final size:20
Alignment explanation
Indices: 29026733--29026785 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
29026723 TTACACCATG
29026733 ATTTTAAAA-AATAATAAAA
1 ATTTTAAAATAATAATAAAA
*
29026752 ATTTTAAAATATATAAATAGAA
1 ATTTTAAAATA-AT-AATAAAA
*
29026774 ATTATAAAATAA
1 ATTTTAAAATAA
29026786 AAAAATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 9 0.31
20 1 0.03
21 3 0.10
22 16 0.55
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
ATTTTAAAATAATAATAAAA
Found at i:29026791 original size:22 final size:22
Alignment explanation
Indices: 29026739--29026802 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
29026729 CATGATTTTA
*
29026739 AAAAATAATAAAAATTTTAAAAT
1 AAAAA-AATAAAAATTATAAAAT
* * *
29026762 ATATAAATAGAAATTATAAAAT
1 AAAAAAATAAAAATTATAAAAT
*
29026784 AAAAAAATCAAAATGTATA
1 AAAAAAATAAAAAT-TATA
29026803 TTAGAAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 25 0.78
23 7 0.22
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (22 bp):
AAAAAAATAAAAATTATAAAAT
Found at i:29028534 original size:20 final size:20
Alignment explanation
Indices: 29028509--29028550 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
29028499 ACATTTTCAC
29028509 AAAAAACA-ATATTTAGAAGA
1 AAAAAACATATATTTA-AAGA
*
29028529 AAAAAACATTTATTTAAAGA
1 AAAAAACATATATTTAAAGA
29028549 AA
1 AA
29028551 GTGTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (20 bp):
AAAAAACATATATTTAAAGA
Found at i:29030008 original size:2 final size:2
Alignment explanation
Indices: 29030001--29030043 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
29029991 ATCATTTTCA
29030001 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29030043 A
1 A
29030044 AACCTCCCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:29034905 original size:30 final size:30
Alignment explanation
Indices: 29034873--29034930 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
29034863 AAAATATAAT
* *
29034873 TTTTAAAAAA-TTAAATTAAAATTTTATTA
1 TTTTAAAAAAGTCAAAATAAAATTTTATTA
29034902 TTTTAAAAAAGGTCAAAATAAAATTTTAT
1 TTTTAAAAAA-GTCAAAATAAAATTTTAT
29034931 CTTTACTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.40
31 15 0.60
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (30 bp):
TTTTAAAAAAGTCAAAATAAAATTTTATTA
Found at i:29045220 original size:231 final size:230
Alignment explanation
Indices: 29044801--29045234 Score: 652
Period size: 231 Copynumber: 1.9 Consensus size: 230
29044791 TTCACGTTTA
* * *
29044801 AGCAATTTTTAATTTTACGTTAATAATATATTTTATTAAATTAGGATAATGTTGAGTTCTAATGT
1 AGCAATTTTGAATTTTACGTTAACAATATATTTTATTAAATTAGGATAATGTTGAATTCTAATGT
* ** * * * *
29044866 TTTGTTTTTTTCATTGGTAAATTATAAAAGAACTACATTATTCAATAATTTTAAAAAAATTGCTA
66 TTTGTTTTTCTCATTGACAAATTATAAAAGAACTAAATTATTAAATAATTGTAAAAAAATTGCAA
* *
29044931 TAAGACAATTAAAAGAAATGAACATCATTTTTATAACTCCAACCAATAAACACCATGAAAAGGAG
131 TAAGACAATTAAAAGAAATGAACATCATTCTTATAACTCCAACCAATAAACACCATGAAAAGCAG
29044996 GCAATAAATGTTATGTTTAGATTTATTTTACATTTG
196 GCAA-AAATGTTATGTTTAGATTTATTTTACATTTG
* * * * *
29045032 AGCAGTTTTGAATTTTACTTTAACCATATATTTTATTAAATTAGGATAATTTTGAATTCTATTGT
1 AGCAATTTTGAATTTTACGTTAACAATATATTTTATTAAATTAGGATAATGTTGAATTCTAATGT
* *
29045097 TTTGTTTTTCTCATTGACATATTATAAAAGAATTAAATTATTAAATAATTGTAAAAAAATTGCAA
66 TTTGTTTTTCTCATTGACAAATTATAAAAGAACTAAATTATTAAATAATTGTAAAAAAATTGCAA
* * * *
29045162 TAAGACATTTAAAATAAATGAACATCATTCTTATAGCTCCAACCAATAAACGCCATGAAAAGCAG
131 TAAGACAATTAAAAGAAATGAACATCATTCTTATAACTCCAACCAATAAACACCATGAAAAGCAG
29045227 GCAAAAAT
196 GCAAAAAT
29045235 TGATTATCAG
Statistics
Matches: 180, Mismatches: 23, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
230 4 0.02
231 176 0.98
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (230 bp):
AGCAATTTTGAATTTTACGTTAACAATATATTTTATTAAATTAGGATAATGTTGAATTCTAATGT
TTTGTTTTTCTCATTGACAAATTATAAAAGAACTAAATTATTAAATAATTGTAAAAAAATTGCAA
TAAGACAATTAAAAGAAATGAACATCATTCTTATAACTCCAACCAATAAACACCATGAAAAGCAG
GCAAAAATGTTATGTTTAGATTTATTTTACATTTG
Found at i:29049374 original size:200 final size:201
Alignment explanation
Indices: 29049010--29049417 Score: 577
Period size: 200 Copynumber: 2.0 Consensus size: 201
29049000 ACAAAAGGCA
* * * * ** * *
29049010 CTTTCTTTTGCCCAGTAGTCACGTGGATGAGAAACTCAACATTGGTGGGAAGCCCCCCATTGATC
1 CTTTCTTTGGCCCAGCAGTCACGTGGAAGAGAAACTCAACATTGGTGGAAAAACCACAATTGATC
* * ** *
29049075 AGCTTCACCCGAGGGAGCTTTATGAACGAGGCTAACGTTTCGTAGAGTTTATCAACATGATCTCT
66 AGCTTCACCCCAGGGAGCTTTATGAACGAGGCGAACGTTTCACAAAGTTTATCAACATGATCTCT
* * * * * *
29049140 GTCGCAAGGGACAAGAAGATTTCAACCGTTTCCTCAATGTATGCTCTAATAGATTAGGATGTCCC
131 GTCGCAAGGGACAAGAAAATTGCAACCATTTCCTCAATGCATGCTCCAATAGAATAGGATGTCCC
29049205 TTCTGC
196 TTCTGC
* *
29049211 CTTTCTTTGGCCTAGCAGTCACGTGGAAGAGAAACTCAACATTGGT-GAAAAACTACAATTGATC
1 CTTTCTTTGGCCCAGCAGTCACGTGGAAGAGAAACTCAACATTGGTGGAAAAACCACAATTGATC
29049275 AGCTTCACCCCAGGGAGCTTTATGAACGAGGCGAACGTTTCACAAAGTTTATCAACATG-TACTC
66 AGCTTCACCCCAGGGAGCTTTATGAACGAGGCGAACGTTTCACAAAGTTTATCAACATGAT-CTC
* *
29049339 TGTTGCAAGGGATAAGAAAATTGCAACCATTTCCTCAATGCATGCTCCAATAGAATAGGATGTCC
130 TGTCGCAAGGGACAAGAAAATTGCAACCATTTCCTCAATGCATGCTCCAATAGAATAGGATGTCC
*
29049404 CTTTTGC
195 CTTCTGC
29049411 CTTTCTT
1 CTTTCTT
29049418 CTTATATATG
Statistics
Matches: 182, Mismatches: 24, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
199 1 0.01
200 139 0.76
201 42 0.23
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (201 bp):
CTTTCTTTGGCCCAGCAGTCACGTGGAAGAGAAACTCAACATTGGTGGAAAAACCACAATTGATC
AGCTTCACCCCAGGGAGCTTTATGAACGAGGCGAACGTTTCACAAAGTTTATCAACATGATCTCT
GTCGCAAGGGACAAGAAAATTGCAACCATTTCCTCAATGCATGCTCCAATAGAATAGGATGTCCC
TTCTGC
Found at i:29057496 original size:10 final size:10
Alignment explanation
Indices: 29057481--29057517 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
29057471 GAAGAGTATT
29057481 TTGAAAACTG
1 TTGAAAACTG
29057491 TTGAAAACTG
1 TTGAAAACTG
*
29057501 TTGAAAACTT
1 TTGAAAACTG
29057511 TTGAAAA
1 TTGAAAA
29057518 GGATATCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.32
Consensus pattern (10 bp):
TTGAAAACTG
Found at i:29058192 original size:30 final size:30
Alignment explanation
Indices: 29058151--29058368 Score: 103
Period size: 29 Copynumber: 7.5 Consensus size: 30
29058141 TTTTTGACTT
29058151 TCGAGGGTAAAAATGTAATTTTTGGTGAAA
1 TCGAGGGTAAAAATGTAATTTTTGGTGAAA
* **
29058181 TCGAGGTTAAAAATGGGA-TTTT-G-GAAA
1 TCGAGGGTAAAAATGTAATTTTTGGTGAAA
29058208 GTTCG-GGGT-AAAATGGTAATTTTTGGTGAAA
1 --TCGAGGGTAAAAAT-GTAATTTTTGGTGAAA
* ** *
29058239 TCG-GGGTTAAAATGGGA--TTTGG-GAAGT
1 TCGAGGGTAAAAATGTAATTTTTGGTGAA-A
* *
29058266 TC-AGGGGT-AAAATGGTAATTCTTGATGAAA
1 TCGA-GGGTAAAAAT-GTAATTTTTGGTGAAA
* * *
29058296 TCGAGGTTAAAAATAG-GA-TTTTGG-GAAGT
1 TCGAGGGTAAAAAT-GTAATTTTTGGTGAA-A
29058325 TC-AGGGGT-AAAATGATAA-TTTTGGTGAAA
1 TCGA-GGGTAAAAATG-TAATTTTTGGTGAAA
29058354 TC-AGGGTTAAAAATG
1 TCGAGGG-TAAAAATG
29058369 GAGTTTTGGA
Statistics
Matches: 142, Mismatches: 23, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
26 3 0.02
27 22 0.15
28 24 0.17
29 40 0.28
30 39 0.27
31 14 0.10
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.31
Consensus pattern (30 bp):
TCGAGGGTAAAAATGTAATTTTTGGTGAAA
Found at i:29058227 original size:58 final size:59
Alignment explanation
Indices: 29058155--29058592 Score: 507
Period size: 58 Copynumber: 7.3 Consensus size: 59
29058145 TGACTTTCGA
*
29058155 GGGTAAAAAT-GTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGAAAGTTC-G
1 GGGT-AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
*
29058213 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGGA-TTTGGGAAGTTCAG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
* * * * *
29058270 GGGTAAAATGGTAATTCTTGATGAAATCGAGGTTAAAAATAGGATTTTGGGAAGTTCAG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
* *
29058329 GGGTAAAATGATAA-TTTTGGTGAAATCAGGGTTAAAAATGGAGTTTTGGAAAGTTTGGTGGAAA
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAT---G----GG--A-TTT--TGGAAA
29058393 GTTC-G
54 GTTCAG
* *
29058398 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
* * * *
29058457 GGGTCAAAAT-ATAATTTTTGGTGAAATTGGGGTTAAAAA-AGGATTTTGGAAAGTTTAG
1 GGGT-AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
* * *
29058515 GGGTAAAATGGTAATTTTTGATAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
* *
29058574 GGTTAAAAT-ATAATTTTTG
1 GGGTAAAATGGTAATTTTTG
29058593 AATAGTTTAA
Statistics
Matches: 328, Mismatches: 31, Indels: 42
0.82 0.08 0.10
Matches are distributed among these distances:
56 11 0.03
57 51 0.16
58 119 0.36
59 83 0.25
60 8 0.02
61 1 0.00
63 1 0.00
65 2 0.01
67 2 0.01
68 3 0.01
69 14 0.04
70 33 0.10
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.33
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAG
Found at i:29058576 original size:29 final size:29
Alignment explanation
Indices: 29058387--29058581 Score: 147
Period size: 29 Copynumber: 6.7 Consensus size: 29
29058377 GAAAGTTTGG
29058387 TGGAAAGTTCGGGG-T-AAAATGGTAATTTT
1 TGGAAAGTTCGGGGTTAAAAATGG-AA-TTT
29058416 TGGTGAAA--TCGGGGTTAAAAATGGAATTT
1 T-G-GAAAGTTCGGGGTTAAAAATGGAATTT
* * **
29058445 TGGAAAGTTCGGGGGTCAAAATATAATTTT
1 TGGAAAGTTCGGGGTTAAAAATGGAA-TTT
*
29058475 TGGTGAAA-TT-GGGGTTAAAAAAGG-ATTT
1 T-G-GAAAGTTCGGGGTTAAAAATGGAATTT
*
29058503 TGGAAAGTTTAGGGG-T-AAAATGGTAATTT
1 TGGAAAG-TTCGGGGTTAAAAATGG-AATTT
* **
29058532 TTGATAAAATCGGGGTTAAAAATGGAATTT
1 TGGA-AAGTTCGGGGTTAAAAATGGAATTT
*
29058562 TGGAAAGTTCAGGGTTAAAA
1 TGGAAAGTTCGGGGTTAAAA
29058582 TATAATTTTT
Statistics
Matches: 131, Mismatches: 18, Indels: 34
0.72 0.10 0.19
Matches are distributed among these distances:
26 4 0.03
27 11 0.08
28 8 0.06
29 55 0.42
30 28 0.21
31 21 0.16
32 4 0.03
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.32
Consensus pattern (29 bp):
TGGAAAGTTCGGGGTTAAAAATGGAATTT
Found at i:29058599 original size:29 final size:28
Alignment explanation
Indices: 29058427--29058599 Score: 95
Period size: 29 Copynumber: 5.9 Consensus size: 28
29058417 GGTGAAATCG
*
29058427 GGGTTAAAAATGGAATTTTGGAAAGTTCGG
1 GGGTTAAAAAT-GAATTTTGGAAAGTTC-A
* *
29058457 GGGTCAAAATAT-AATTTTTGGTGAAA-TT-G
1 GGGTTAAAA-ATGAA-TTTT-G-GAAAGTTCA
* * *
29058486 GGGTTAAAAAAGGATTTTGGAAAGTTTA
1 GGGTTAAAAATGAATTTTGGAAAGTTCA
* * ** *
29058514 GGGGT-AAAATGGTAATTTTTGATAAAATCG
1 GGGTTAAAAAT-G-AATTTTGGA-AAGTTCA
29058544 GGGTTAAAAATGGAATTTTGGAAAGTTCA
1 GGGTTAAAAAT-GAATTTTGGAAAGTTCA
*
29058573 GGGTTAAAATAT-AATTTTTGAATAGTT
1 GGGTTAAAA-ATGAATTTTGGAA-AGTT
29058600 TAAGGACCTA
Statistics
Matches: 111, Mismatches: 19, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
26 4 0.04
27 7 0.06
28 19 0.17
29 36 0.32
30 29 0.26
31 12 0.11
32 4 0.04
ACGTcount: A:0.36, C:0.02, G:0.27, T:0.35
Consensus pattern (28 bp):
GGGTTAAAAATGAATTTTGGAAAGTTCA
Found at i:29060417 original size:18 final size:17
Alignment explanation
Indices: 29060396--29060429 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
29060386 TAATTAGACT
*
29060396 TTTAATTTTAATTTTAAG
1 TTTAATATT-ATTTTAAG
29060414 TTTAATATTATTTTAA
1 TTTAATATTATTTTAA
29060430 ATTTGATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTAATATTATTTTAAG
Found at i:29060457 original size:17 final size:17
Alignment explanation
Indices: 29060437--29060511 Score: 84
Period size: 17 Copynumber: 4.6 Consensus size: 17
29060427 TAAATTTGAT
* *
29060437 TAAATTTAAACTTAAAG
1 TAAATTTAAATTTAAAA
**
29060454 TAAATTTAAA--T-AGG
1 TAAATTTAAATTTAAAA
29060468 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
29060485 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
29060502 TCAATTTAAA
1 TAAATTTAAA
29060512 ATCAATTTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
14 12 0.24
15 1 0.02
16 1 0.02
17 37 0.73
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:29060462 original size:11 final size:12
Alignment explanation
Indices: 29060436--29060522 Score: 56
Period size: 11 Copynumber: 7.4 Consensus size: 12
29060426 TTAAATTTGA
* *
29060436 TTAAATTTAAAC
1 TTAAATATAAAT
*
29060448 TTAAA-GTAAAT
1 TTAAATATAAAT
29060459 TTAAATAGGTAAAT
1 TTAAATA--TAAAT
*
29060473 TTAAATTTAAA-
1 TTAAATATAAAT
* *
29060484 ATAAATTTAAAT
1 TTAAATATAAAT
*
29060496 TTAAA-ATCAAT
1 TTAAATATAAAT
*
29060507 TTAAA-ATCAAT
1 TTAAATATAAAT
29060518 TTAAA
1 TTAAA
29060523 CTTTTAATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
11 39 0.62
12 13 0.21
14 11 0.17
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (12 bp):
TTAAATATAAAT
Found at i:29060463 original size:6 final size:6
Alignment explanation
Indices: 29060436--29060500 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
29060426 TTAAATTTGA
* * *
29060436 TTAAAT TTAAAC TTAAA- GTAAAT TTAAAT AGGTAAAT TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT --TTAAAT TTAAAT TTAAAT
*
29060484 ATAAAT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAA
29060501 ATCAATTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
5 8 0.17
6 35 0.73
8 5 0.10
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.40
Consensus pattern (6 bp):
TTAAAT
Found at i:29060475 original size:31 final size:31
Alignment explanation
Indices: 29060437--29060495 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
29060427 TAAATTTGAT
*
29060437 TAAATTTAAACTTAAAGTAAATTTAAATAGG
1 TAAATTTAAACTTAAAATAAATTTAAATAGG
*
29060468 TAAATTTAAATTTAAAATAAATTTAAAT
1 TAAATTTAAACTTAAAATAAATTTAAAT
29060496 TTAAAATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (31 bp):
TAAATTTAAACTTAAAATAAATTTAAATAGG
Found at i:29061797 original size:44 final size:45
Alignment explanation
Indices: 29061676--29061801 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
29061666 ACGTATTCAT
* * **
29061676 CATAATGGCCTTCATGTTTACTGT-CCTGACAGACTACATATTCGC
1 CATAATGGCCTTCGTGTTTACTGTCCCAG-TGGACTACATATTCGC
*
29061721 CATAATGGCCTTCGTGTTTACTTTCCCAGTGGACTACATATTCGC
1 CATAATGGCCTTCGTGTTTACTGTCCCAGTGGACTACATATTCGC
* * * *
29061766 CATAATGG-TTTTGTGTTTACTGTCTCGGTGGACTAC
1 CATAATGGCCTTCGTGTTTACTGTCCCAGTGGACTAC
29061802 GCCAAAGTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 23 0.33
45 44 0.63
46 3 0.04
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (45 bp):
CATAATGGCCTTCGTGTTTACTGTCCCAGTGGACTACATATTCGC
Found at i:29075869 original size:3 final size:3
Alignment explanation
Indices: 29075861--29075885 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
29075851 ATCTCCACAT
29075861 TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA T
29075886 AAGCCACGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:29078898 original size:7 final size:7
Alignment explanation
Indices: 29078886--29078911 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
29078876 AAATCTATAT
29078886 ATTTTAA
1 ATTTTAA
29078893 ATTTTAA
1 ATTTTAA
29078900 ATTTTAA
1 ATTTTAA
29078907 ATTTT
1 ATTTT
29078912 CATTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTAA
Found at i:29080537 original size:5 final size:5
Alignment explanation
Indices: 29080527--29080552 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
29080517 TTGTATATAT
29080527 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
29080553 ACTTAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:29084414 original size:20 final size:20
Alignment explanation
Indices: 29084391--29084445 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
29084381 GTAAAAAACC
29084391 TAAAAAATAATTTAAAAATA
1 TAAAAAATAATTTAAAAATA
* *
29084411 TAAAAATTAA--AAAAAATA
1 TAAAAAATAATTTAAAAATA
*
29084429 TAAATAA-AATTATAAAA
1 TAAAAAATAATT-TAAAA
29084446 GAATTATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
17 2 0.07
18 12 0.44
20 13 0.48
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAAATAATTTAAAAATA
Found at i:29084547 original size:19 final size:19
Alignment explanation
Indices: 29084525--29084587 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
29084515 TATAAATTAG
*
29084525 AAATTGTAAAATATTGTAA
1 AAATTGTAAAAAATTGTAA
* * *
29084544 AAATTATAAAAAAAAT-TAG
1 AAATTGT-AAAAAATTGTAA
*
29084563 AAATTGTAAAAGATTGTTAA
1 AAATTGTAAAAAATTG-TAA
29084583 AAATT
1 AAATT
29084588 ATTAAATTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
18 6 0.18
19 14 0.42
20 13 0.39
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (19 bp):
AAATTGTAAAAAATTGTAA
Found at i:29090639 original size:2 final size:2
Alignment explanation
Indices: 29090634--29090661 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29090624 AATCACACTA
29090634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29090662 TATTGGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29094993 original size:21 final size:22
Alignment explanation
Indices: 29094964--29095006 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
29094954 TATTGATTAT
*
29094964 AAATAGGTTTAA-TAAAGGTTAA
1 AAATAGG-TTAATTAAAGCTTAA
29094986 AAAT-GGTTAATTAAAGCTTAA
1 AAATAGGTTAATTAAAGCTTAA
29095007 TGATGAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (22 bp):
AAATAGGTTAATTAAAGCTTAA
Found at i:29101810 original size:21 final size:22
Alignment explanation
Indices: 29101781--29101823 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
29101771 TATTGATTAC
*
29101781 AAATAGGTTTAA-TAAAGGTTAA
1 AAATAGG-TTAATTAAAGCTTAA
29101803 AAAT-GGTTAATTAAAGCTTAA
1 AAATAGGTTAATTAAAGCTTAA
29101824 TGATGAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (22 bp):
AAATAGGTTAATTAAAGCTTAA
Found at i:29117438 original size:31 final size:29
Alignment explanation
Indices: 29117370--29117438 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
29117360 ATTAATAGTT
* *
29117370 TAATTATCACATTACATATTTTTGAAGTA
1 TAATTATCACATTACATATTTATGAAATA
*
29117399 TAAATATCACATTGAACAT-TTTATGAAAATA
1 TAATTATCACATT--ACATATTTATG-AAATA
29117430 TAATTATCA
1 TAATTATCA
29117439 AACGTGATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 16 0.48
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (29 bp):
TAATTATCACATTACATATTTATGAAATA
Found at i:29125466 original size:18 final size:18
Alignment explanation
Indices: 29125443--29125494 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
29125433 TTTTCAATTG
29125443 TAATTAATTTAAATTT-TT
1 TAATTAA-TTAAATTTATT
29125461 TAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
29125479 TAATTAA--AAATTTATT
1 TAATTAATTAAATTTATT
29125495 CTCATCTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.27
17 8 0.24
18 16 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:29125491 original size:16 final size:17
Alignment explanation
Indices: 29125452--29125494 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
29125442 GTAATTAATT
29125452 TAAATTT-TTTAATTAA
1 TAAATTTATTTAATTAA
29125468 TTAAATTTATTTAATTAA
1 -TAAATTTATTTAATTAA
29125486 -AAATTTATT
1 TAAATTTATT
29125495 CTCATCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.36
17 7 0.28
18 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAAATTTATTTAATTAA
Found at i:29126188 original size:16 final size:15
Alignment explanation
Indices: 29126167--29126200 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
29126157 AGTAAATAGA
29126167 AAAATATCTTATTGAT
1 AAAATATCTTATT-AT
*
29126183 AAAATATGTTATTAT
1 AAAATATCTTATTAT
29126198 AAA
1 AAA
29126201 TTATTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (15 bp):
AAAATATCTTATTAT
Found at i:29132848 original size:18 final size:17
Alignment explanation
Indices: 29132821--29132855 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
29132811 ATTTTAACTC
29132821 TCAATGCTTCATGCAAA
1 TCAATGCTTCATGCAAA
29132838 TCAACTGCTTCATGCAAA
1 TCAA-TGCTTCATGCAAA
29132856 CATGACTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (17 bp):
TCAATGCTTCATGCAAA
Found at i:29133514 original size:39 final size:39
Alignment explanation
Indices: 29133456--29133533 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
29133446 CCTAAATCAA
* * ** * *
29133456 AATCCACAAGAAAGCATCCTTTGAGTTTCAAGCTAACCT
1 AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
29133495 AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
1 AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
29133534 TGAATCACTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (39 bp):
AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
Found at i:29143251 original size:22 final size:22
Alignment explanation
Indices: 29143226--29143274 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
29143216 TGTTTTCTTC
29143226 TTATTTTGCTACAATTTCATTA
1 TTATTTTGCTACAATTTCATTA
* * **
29143248 TTATGTTGCTACTATTTTGTTA
1 TTATTTTGCTACAATTTCATTA
29143270 TTATT
1 TTATT
29143275 ATTTAAATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.59
Consensus pattern (22 bp):
TTATTTTGCTACAATTTCATTA
Found at i:29143337 original size:30 final size:30
Alignment explanation
Indices: 29143303--29143367 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
29143293 ACTTATTTTA
* * *
29143303 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTACTATTTCAGAAGCAT
*
29143333 TTGTTAATTTTGTTACTATTTCATAAGCAT
1 TTGTTAATTTTGTTACTATTTCAGAAGCAT
29143363 TTGTT
1 TTGTT
29143368 TATTAAGTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTACTATTTCAGAAGCAT
Found at i:29144591 original size:15 final size:16
Alignment explanation
Indices: 29144571--29144602 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
29144561 AAAATTTCAA
29144571 AGTAATAAT-AATAAT
1 AGTAATAATAAATAAT
29144586 AGTAATAATAAATAAT
1 AGTAATAATAAATAAT
29144602 A
1 A
29144603 AATTAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
AGTAATAATAAATAAT
Found at i:29148016 original size:24 final size:23
Alignment explanation
Indices: 29147978--29148027 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
29147968 TTAATATATG
* *
29147978 AAATATTAATTTTAAATATTTCT
1 AAATATTAATATTAAATATTTAT
*
29148001 AAATAATTAATATTAATTATTTAT
1 AAAT-ATTAATATTAAATATTTAT
29148025 AAA
1 AAA
29148028 ATTTAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATATTAATATTAAATATTTAT
Found at i:29159280 original size:23 final size:23
Alignment explanation
Indices: 29159233--29159281 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
29159223 TTAATTTACA
**
29159233 TTAAATTTTAAATTTTTTATATT
1 TTAAATTTTAAAAGTTTTATATT
*
29159256 TTAAATTTTAAAGAGTTTTATTTT
1 TTAAATTTTAAA-AGTTTTATATT
29159280 TT
1 TT
29159282 TCATAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTAAATTTTAAAAGTTTTATATT
Found at i:29159600 original size:23 final size:24
Alignment explanation
Indices: 29159558--29159616 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
29159548 AAGTACATAT
* *
29159558 AAAAAAAGAGACTCTTTTGTTCAGA
1 AAAAAAAAAGACTC-TTTGTTCAAA
29159583 AAAAAAAAAGACTC-TTGTTCAAA
1 AAAAAAAAAGACTCTTTGTTCAAA
29159606 AAAAAAAAAGA
1 AAAAAAAAAGA
29159617 AGACTCAGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 19 0.59
25 13 0.41
ACGTcount: A:0.58, C:0.10, G:0.12, T:0.20
Consensus pattern (24 bp):
AAAAAAAAAGACTCTTTGTTCAAA
Found at i:29161724 original size:13 final size:13
Alignment explanation
Indices: 29161706--29161731 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29161696 TGCTAGGAAG
29161706 CCTTTACTTGACC
1 CCTTTACTTGACC
29161719 CCTTTACTTGACC
1 CCTTTACTTGACC
29161732 AGGTACTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.08, T:0.38
Consensus pattern (13 bp):
CCTTTACTTGACC
Found at i:29164592 original size:26 final size:26
Alignment explanation
Indices: 29164563--29164616 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29164553 TTAAACAGTT
*
29164563 ACATGCAGTACAATGACTAGTTTTTA
1 ACATGCAATACAATGACTAGTTTTTA
*
29164589 ACATGTAATACAATGACTAGTTTTTA
1 ACATGCAATACAATGACTAGTTTTTA
29164615 AC
1 AC
29164617 TGTAGAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (26 bp):
ACATGCAATACAATGACTAGTTTTTA
Found at i:29164620 original size:25 final size:26
Alignment explanation
Indices: 29164571--29164620 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29164561 TTACATGCAG
29164571 TACAATGACTAGTTTTTAACATGTAA
1 TACAATGACTAGTTTTTAACATGTAA
29164597 TACAATGACTAGTTTTTAAC-TGTA
1 TACAATGACTAGTTTTTAACATGTA
29164621 GAAAAGGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (26 bp):
TACAATGACTAGTTTTTAACATGTAA
Found at i:29171820 original size:28 final size:29
Alignment explanation
Indices: 29171789--29171864 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
29171779 TTAATATAAT
29171789 ATTTGGTATTTAAATTTATTTT-T-TTCTA
1 ATTTGGTATTTAAATTTATTTTATATTC-A
*
29171817 ATTTGGTATTTAAGTTT-TTTTATATTCA
1 ATTTGGTATTTAAATTTATTTTATATTCA
* **
29171845 ATTTAGTACCTAAATTTATT
1 ATTTGGTATTTAAATTTATT
29171865 AAATATTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 4 0.10
28 31 0.77
29 5 0.12
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (29 bp):
ATTTGGTATTTAAATTTATTTTATATTCA
Found at i:29172078 original size:29 final size:31
Alignment explanation
Indices: 29172045--29172109 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 31
29172035 GGGCCCCAAA
* *
29172045 AAGTTTAAGTATCAACTTA-AAAAAA-TGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
29172074 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
29172105 AAGTT
1 AAGTT
29172110 CATATACCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 17 0.53
30 6 0.19
31 9 0.28
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.29
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
Found at i:29172118 original size:31 final size:31
Alignment explanation
Indices: 29172063--29172121 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
29172053 GTATCAACTT
*
29172063 AAAAAAATGTCAAGTTTAAGTACCAAATTAG
1 AAAAAAATGTCAAGTTCAAGTACCAAATTAG
*
29172094 AAAAAAGTGTCAAGTTCATA-TACCAAAT
1 AAAAAAATGTCAAGTTCA-AGTACCAAAT
29172122 ATCATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25
Consensus pattern (31 bp):
AAAAAAATGTCAAGTTCAAGTACCAAATTAG
Found at i:29172723 original size:17 final size:17
Alignment explanation
Indices: 29172691--29172724 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
29172681 ACTTGAGATT
*
29172691 TTTGAATTTATATTAAG
1 TTTGAATTAATATTAAG
*
29172708 TTTGAATTAATTTTAAG
1 TTTGAATTAATATTAAG
29172725 ATTTATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (17 bp):
TTTGAATTAATATTAAG
Found at i:29172776 original size:17 final size:16
Alignment explanation
Indices: 29172712--29172774 Score: 63
Period size: 17 Copynumber: 3.8 Consensus size: 16
29172702 ATTAAGTTTG
*
29172712 AATTAATTTTAAGATTT
1 AATTAAATTTAA-ATTT
*
29172729 ATTTAAATTTAAATTT
1 AATTAAATTTAAATTT
** *
29172745 GTTTTGAATTTAAATTT
1 -AATTAAATTTAAATTT
29172762 AATTAAATTTAAA
1 AATTAAATTTAAA
29172775 ATGGTTTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
16 14 0.37
17 24 0.63
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (16 bp):
AATTAAATTTAAATTT
Found at i:29172782 original size:33 final size:33
Alignment explanation
Indices: 29172714--29172791 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
29172704 TAAGTTTGAA
* * * *
29172714 TTAATTTTAAGATTTATTTAAATTTAAATTTGTT
1 TTAAATTTAA-ATTTAATTAAATTTAAAATGGTT
*
29172748 TTGAATTTAAATTTAATTAAATTTAAAATGGTT
1 TTAAATTTAAATTTAATTAAATTTAAAATGGTT
*
29172781 TTAAACTTAAA
1 TTAAATTTAAA
29172792 CTAAAATTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 29 0.78
34 8 0.22
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.51
Consensus pattern (33 bp):
TTAAATTTAAATTTAATTAAATTTAAAATGGTT
Found at i:29174927 original size:60 final size:60
Alignment explanation
Indices: 29174836--29174976 Score: 214
Period size: 60 Copynumber: 2.4 Consensus size: 60
29174826 AAATTGTCCA
*
29174836 AAAATTACATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTCCC
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTCCC
* * *
29174896 AAAATTATATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTT-CA
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTCCC
*
29174955 AAAATCACCATTTT-ACCCCAAA
1 AAAATTA-CATTTTAACCCCAAA
29174977 CTTCCCTAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
59 15 0.20
60 59 0.80
ACGTcount: A:0.40, C:0.25, G:0.02, T:0.33
Consensus pattern (60 bp):
AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTCCC
Found at i:29174972 original size:29 final size:30
Alignment explanation
Indices: 29174836--29174952 Score: 198
Period size: 30 Copynumber: 3.9 Consensus size: 30
29174826 AAATTGTCCA
*
29174836 AAAATTACATTTTAACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCTAAAACTTTTCC
*
29174866 AAAATTACATTTTGACCCTAAAACTTTCCC
1 AAAATTACATTTTGACCCTAAAACTTTTCC
* *
29174896 AAAATTATATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCTAAAACTTTTCC
29174926 AAAATTACATTTTGACCCTAAAACTTT
1 AAAATTACATTTTGACCCTAAAACTTT
29174953 CAAAAATCAC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTGACCCTAAAACTTTTCC
Found at i:29176876 original size:15 final size:14
Alignment explanation
Indices: 29176856--29176885 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
29176846 GAAGAAGAAG
29176856 AAGAAAAAAAATACA
1 AAGAAAAAAAA-ACA
29176871 AAGAAAAAAAAACA
1 AAGAAAAAAAAACA
29176885 A
1 A
29176886 GGTGGGTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (14 bp):
AAGAAAAAAAAACA
Found at i:29177953 original size:55 final size:55
Alignment explanation
Indices: 29177886--29178042 Score: 217
Period size: 55 Copynumber: 2.9 Consensus size: 55
29177876 ATTGTCCAAA
* * * *
29177886 AATATTGCTTC-TTTGGATTAATTGTTTTTTATGTTTAAACCGATTGTCATGTTGG
1 AATATTGCTTCTTTTGAATAAATTG-TTTATATGTTTAAATCGATTGTCATGTTGG
* * * *
29177941 AATATTGTTTCTTTTGAATCAATTATTTATATATTTAAATCGATTGTCATGTTGG
1 AATATTGCTTCTTTTGAATAAATTGTTTATATGTTTAAATCGATTGTCATGTTGG
*
29177996 AATATTACTTCTTTTGAATAAATTGTTTATATGTTTAAATCGATTGT
1 AATATTGCTTCTTTTGAATAAATTGTTTATATGTTTAAATCGATTGT
29178043 TACGTAGCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
55 79 0.89
56 10 0.11
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (55 bp):
AATATTGCTTCTTTTGAATAAATTGTTTATATGTTTAAATCGATTGTCATGTTGG
Found at i:29179570 original size:21 final size:21
Alignment explanation
Indices: 29179546--29179586 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29179536 TATCGGGGAA
* *
29179546 TGATTAAAATAAGAATAATTG
1 TGATCAAAATAAAAATAATTG
29179567 TGATCAAAATAAAAATAATT
1 TGATCAAAATAAAAATAATT
29179587 TTAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (21 bp):
TGATCAAAATAAAAATAATTG
Found at i:29182244 original size:2 final size:2
Alignment explanation
Indices: 29182237--29182276 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
29182227 ATCTTAAGGC
29182237 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29182277 GAGAGAGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:29182281 original size:2 final size:2
Alignment explanation
Indices: 29182276--29182325 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
29182266 ATATATATAT
29182276 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
29182318 AG AG AG AG
1 AG AG AG AG
29182326 GCACTTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:29190670 original size:63 final size:63
Alignment explanation
Indices: 29190592--29190718 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
29190582 TTTACCATCC
29190592 AAAATTCCACATTATTTCTATTCAATAATTTCATTATACAAAATAATACCAGTGGGAGACTAG
1 AAAATTCCACATTATTTCTATTCAATAATTTCATTATACAAAATAATACCAGTGGGAGACTAG
29190655 AAAATTCCACATTATTTCTATTCAATAATTTCATTATACAAAATAATACCAGTGGGAGACTAG
1 AAAATTCCACATTATTTCTATTCAATAATTTCATTATACAAAATAATACCAGTGGGAGACTAG
29190718 A
1 A
29190719 GATTAAGTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (63 bp):
AAAATTCCACATTATTTCTATTCAATAATTTCATTATACAAAATAATACCAGTGGGAGACTAG
Found at i:29194101 original size:16 final size:16
Alignment explanation
Indices: 29194058--29194105 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
29194048 ATGTCGCCAT
*
29194058 CTCTCTCACTCTCTCA
1 CTCTCACACTCTCTCA
*
29194074 CTCTCTCACTCTCTCA
1 CTCTCACACTCTCTCA
**
29194090 CTCTCAGTCTCTCTCA
1 CTCTCACACTCTCTCA
29194106 TGCAATTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.12, C:0.48, G:0.02, T:0.38
Consensus pattern (16 bp):
CTCTCACACTCTCTCA
Found at i:29194101 original size:24 final size:24
Alignment explanation
Indices: 29194058--29194105 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
29194048 ATGTCGCCAT
*
29194058 CTCTCTCACTCTCTCACTCTCTCA
1 CTCTCTCACTCTCACACTCTCTCA
**
29194082 CTCTCTCACTCTCAGTCTCTCTCA
1 CTCTCTCACTCTCACACTCTCTCA
29194106 TGCAATTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.48, G:0.02, T:0.38
Consensus pattern (24 bp):
CTCTCTCACTCTCACACTCTCTCA
Found at i:29194102 original size:8 final size:8
Alignment explanation
Indices: 29194058--29194094 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
29194048 ATGTCGCCAT
29194058 CTCTCTCA
1 CTCTCTCA
29194066 CTCTCTCA
1 CTCTCTCA
29194074 CTCTCTCA
1 CTCTCTCA
29194082 CTCTCTCA
1 CTCTCTCA
29194090 CTCTC
1 CTCTC
29194095 AGTCTCTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.38
Consensus pattern (8 bp):
CTCTCTCA
Found at i:29196613 original size:2 final size:2
Alignment explanation
Indices: 29196608--29196662 Score: 89
Period size: 2 Copynumber: 29.0 Consensus size: 2
29196598 ATATAAAAAT
29196608 AG AG AG AG AG AG AG AG -G AG A- AG AG AG AG AG AG AG AG AG -G
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
29196647 AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG
29196663 GTTTTTTTGG
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 3 0.06
2 47 0.94
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:29202610 original size:19 final size:19
Alignment explanation
Indices: 29202583--29202630 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
29202573 CAAATAGCAA
*
29202583 CCAACAATTAAATAAAATT
1 CCAAAAATTAAATAAAATT
*
29202602 CCAAAAATTTAGATAAAATT
1 CCAAAAA-TTAAATAAAATT
*
29202622 CCATAAATT
1 CCAAAAATT
29202631 TAGATAGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.29
Consensus pattern (19 bp):
CCAAAAATTAAATAAAATT
Found at i:29202619 original size:20 final size:20
Alignment explanation
Indices: 29202594--29202646 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
29202584 CAACAATTAA
29202594 ATAAAATTCCAAAAATTTAG
1 ATAAAATTCCAAAAATTTAG
*
29202614 ATAAAATTCCATAAATTTAG
1 ATAAAATTCCAAAAATTTAG
*
29202634 ATAGAATT-CAAAA
1 ATAAAATTCCAAAA
29202647 TGAATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (20 bp):
ATAAAATTCCAAAAATTTAG
Found at i:29203985 original size:110 final size:109
Alignment explanation
Indices: 29203667--29204184 Score: 506
Period size: 110 Copynumber: 4.7 Consensus size: 109
29203657 TTTTTAACCA
* * * * * * * * * * *
29203667 GCTCACGATGCTGCTCATACAAGCAGTAGAAAATCCGCAACACATGCAAGATCTTAAGTCATCGT
1 GCTCACGATGCTACTCACACAAGCTGCAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCGC
* * * * * *
29203732 TATGTTATGTATCACCGGTACATAATACCTGCTAAATAACCATCG
66 TACGGTCTGTATCACCGATACATAGTACCTGCTAAATAATCA-CG
* *
29203777 GCTCACGAGGTTACTCACACAAGCTGCA-ATGAATCC-TAACATATGCAGGATCTCAA-CTCATC
1 GCTCACGATGCTACTCACACAAGCTGCAGA-GAATCCGTAACATATGCAGGATCTCAAGC-CATC
* * * * *
29203839 GCTATGGTTTGTATAACTTG-TACATAGTACCTGCTAAAAAATCACTG
64 GCTACGGTCTGTATCAC-CGATACATAGTACCTGCTAAATAATCAC-G
* ** * * *
29203886 GCTCATGATGCTACTCACACAAGCTGCAGAGAATTTGTAACATATACATGATCTTAAGCCATCGC
1 GCTCACGATGCTACTCACACAAGCTGCAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCGC
* *
29203951 TACGGT-TGGTATCACCGATATATAGTACTTGCTAAATAATCACCG
66 TACGGTCT-GTATCACCGATACATAGTACCTGCTAAATAATCA-CG
* * ** *
29203996 GGTCACGATGCTACTCACATAAGCTATAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCGT
1 GCTCACGATGCTACTCACACAAGCTGCAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCGC
*
29204061 TACGGTCTGTATCACCGAAACATAGTACCTGCTAAATAATCACG
66 TACGGTCTGTATCACCGATACATAGTACCTGCTAAATAATCACG
* ** * * * * * *
29204105 TACTCACGATATTGCTCACACAAACTGTAGAGAATCCGCAACATATGCAGGATCTTAAGCCATTG
1 -GCTCACGATGCTACTCACACAAGCTGCAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCG
29204170 CTACGGTCTGTATCA
65 CTACGGTCTGTATCA
29204185 TCAGCTCAAA
Statistics
Matches: 336, Mismatches: 60, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
108 1 0.00
109 89 0.26
110 243 0.72
111 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (109 bp):
GCTCACGATGCTACTCACACAAGCTGCAGAGAATCCGTAACATATGCAGGATCTCAAGCCATCGC
TACGGTCTGTATCACCGATACATAGTACCTGCTAAATAATCACG
Found at i:29226576 original size:10 final size:11
Alignment explanation
Indices: 29226556--29226601 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
29226546 AAAAGAAAAT
29226556 AAATTATTAAA
1 AAATTATTAAA
*
29226567 AAATTATAAATA
1 AAATTATTAA-A
*
29226579 AAAATATTAAA
1 AAATTATTAAA
29226590 AAATTA-TAAA
1 AAATTATTAAA
29226600 AA
1 AA
29226602 TTGGTTCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 6 0.20
11 15 0.50
12 9 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATTATTAAA
Found at i:29226590 original size:23 final size:22
Alignment explanation
Indices: 29226552--29226599 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 22
29226542 GATTAAAAGA
*
29226552 AAATAAATTATTAAAAAATTAT
1 AAATAAAATATTAAAAAATTAT
29226574 AAATAAAAATATTAAAAAATTAT
1 AAAT-AAAATATTAAAAAATTAT
29226597 AAA
1 AAA
29226600 AATTGGTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATAAAATATTAAAAAATTAT
Found at i:29233167 original size:3 final size:3
Alignment explanation
Indices: 29233159--29233190 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
29233149 TCTCCATTTA
29233159 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
29233191 TTCCTATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Done.