Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 132 of 144
Found at i:32986557 original size:31 final size:31
Alignment explanation
Indices: 32986515--32986594 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
32986505 CTTTTTTTTA
* * * *
32986515 CATTTTTGAAAATG-TTTGGCTCTTATTTGAG
1 CATTTTCGAAAA-GATTAGGCTCTCATTTAAG
32986546 CATTTTCGAAAAGATTAGGCTCTCATTTAAG
1 CATTTTCGAAAAGATTAGGCTCTCATTTAAG
32986577 CATTTTCGAAAAGATTAG
1 CATTTTCGAAAAGATTAG
32986595 ACCCTTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (31 bp):
CATTTTCGAAAAGATTAGGCTCTCATTTAAG
Found at i:32986606 original size:31 final size:31
Alignment explanation
Indices: 32986539--32986621 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
32986529 TTTGGCTCTT
* * *
32986539 ATTTGAGCATTTTCGAAAAGATTAGGCTCTC
1 ATTTAAGCATTTTCGAAAAGATTAGACCCTC
*
32986570 ATTTAAGCATTTTCGAAAAGATTAGACCCTT
1 ATTTAAGCATTTTCGAAAAGATTAGACCCTC
* *
32986601 TTTTAACCATTTT-G-AAAGATT
1 ATTTAAGCATTTTCGAAAAGATT
32986622 TAGCTTTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 7 0.15
30 1 0.02
31 38 0.83
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (31 bp):
ATTTAAGCATTTTCGAAAAGATTAGACCCTC
Found at i:32997146 original size:2 final size:2
Alignment explanation
Indices: 32997139--32997171 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32997129 GGTAAGAGTA
32997139 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
32997172 GAGACTGACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:32997437 original size:4 final size:4
Alignment explanation
Indices: 32997406--32997452 Score: 62
Period size: 4 Copynumber: 12.0 Consensus size: 4
32997396 TAAAGAACAG
*
32997406 AGAA AGAGA AG-A AG-A AGAA AGGA AGAA AGAA AGAA AGAA AGAA AGAA
1 AGAA AGA-A AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
32997453 TCTTTTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 6 0.15
4 30 0.77
5 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:33001058 original size:24 final size:25
Alignment explanation
Indices: 33001031--33001078 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
33001021 GTGATTAGTG
*
33001031 TAAAAATAATAATGT-TGATAAAAT
1 TAAAAATAATAATGTAAGATAAAAT
* *
33001055 TAAATATTATAATGTAAGATAAAA
1 TAAAAATAATAATGTAAGATAAAA
33001079 AATTAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (25 bp):
TAAAAATAATAATGTAAGATAAAAT
Found at i:33005458 original size:5 final size:5
Alignment explanation
Indices: 33005448--33005475 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
33005438 TTCTGTTTGT
33005448 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
33005476 GGTACACTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTA
Found at i:33010321 original size:46 final size:46
Alignment explanation
Indices: 33010261--33010356 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 46
33010251 ATTGTCACAT
* *
33010261 TGCTCTTAAACATGAGCTTAAATTGTTCA-CACAAAATAAATGATGA
1 TGCTCTTAAACATGAGCTTAAATGGTTCATC-CAAAATAAATGATAA
*
33010307 TGCTCTTAAGCATGAGCTTAAATGGTTCATCCAAAATAAATGATAA
1 TGCTCTTAAACATGAGCTTAAATGGTTCATCCAAAATAAATGATAA
33010353 TGCT
1 TGCT
33010357 ACTAAGTACA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (46 bp):
TGCTCTTAAACATGAGCTTAAATGGTTCATCCAAAATAAATGATAA
Found at i:33010374 original size:46 final size:46
Alignment explanation
Indices: 33010261--33010374 Score: 115
Period size: 46 Copynumber: 2.5 Consensus size: 46
33010251 ATTGTCACAT
* ** * *
33010261 TGCTCTTAAACATGAGCTTAAATTGTTCACACAAAATAAATGATGA
1 TGCTCTTAAGCACAAGCTTAAATGGTTCACACAAAATAAATGATAA
**
33010307 TGCTCTTAAGCATGAGCTTAAATGGTTCATC-CAAAATAAATGATAA
1 TGCTCTTAAGCACAAGCTTAAATGGTTCA-CACAAAATAAATGATAA
* *
33010353 TGCTAC-TAAGTACAAGTTTAAA
1 TGCT-CTTAAGCACAAGCTTAAA
33010375 CTGTTTATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 57 0.97
47 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (46 bp):
TGCTCTTAAGCACAAGCTTAAATGGTTCACACAAAATAAATGATAA
Found at i:33013184 original size:54 final size:56
Alignment explanation
Indices: 33013115--33013219 Score: 160
Period size: 54 Copynumber: 1.9 Consensus size: 56
33013105 GGATGTTGGC
* *
33013115 CATTGCATGGTCGACACCTCCTATTTC-AAAAAAATTGCA-TTTTTGGGTGTTCGT
1 CATTGCATGGCCGACACCCCCTATTTCAAAAAAAATTGCATTTTTTGGGTGTTCGT
* *
33013169 CATTGTATGGCCGACACCCCCTATTTCAAAAAAAATTGTATTTTTTGGGTG
1 CATTGCATGGCCGACACCCCCTATTTCAAAAAAAATTGCATTTTTTGGGTG
33013220 CCGACCATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 24 0.53
55 11 0.24
56 10 0.22
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (56 bp):
CATTGCATGGCCGACACCCCCTATTTCAAAAAAAATTGCATTTTTTGGGTGTTCGT
Found at i:33013318 original size:60 final size:60
Alignment explanation
Indices: 33013232--33013349 Score: 177
Period size: 60 Copynumber: 2.0 Consensus size: 60
33013222 GACCATTACA
* *
33013232 TTTTCTCGAGAAAAAAGTTTTAAA-TTTTTTTGGTGTTGGCCATCAAATGGCCGACACTCC
1 TTTTCTCGAGAAAAAAATTCTAAATTTTTTTTGGTGTT-GCCATCAAATGGCCGACACTCC
*
33013292 TTTTCTCGAATAAAAAAATTCT-AATTTTTTTTGGTGTTGCCATCAAATGGCCGACACT
1 TTTTCTCG-AGAAAAAAATTCTAAATTTTTTTTGGTGTTGCCATCAAATGGCCGACACT
33013350 AATTTCTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
60 30 0.57
61 23 0.43
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (60 bp):
TTTTCTCGAGAAAAAAATTCTAAATTTTTTTTGGTGTTGCCATCAAATGGCCGACACTCC
Found at i:33013549 original size:31 final size:30
Alignment explanation
Indices: 33013506--33013566 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
33013496 ATACAATGAA
* *
33013506 ATTTTGGGGTTGAGCTATATACTGTCATGT
1 ATTTTGGAGTTGAACTATATACTGTCATGT
*
33013536 ATTTTAGGAGTTGAATTATATACTGTCATGT
1 ATTTT-GGAGTTGAACTATATACTGTCATGT
33013567 GAAGCGGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (30 bp):
ATTTTGGAGTTGAACTATATACTGTCATGT
Found at i:33015251 original size:12 final size:12
Alignment explanation
Indices: 33015209--33015256 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
33015199 ATTTGTGTAA
*
33015209 AAATTAATTTGA
1 AAATTAATTTGG
33015221 AAATTAATTTAAGTTG
1 AAATTAATTT--G--G
33015237 AAATTAATTTGG
1 AAATTAATTTGG
33015249 AAATTAAT
1 AAATTAAT
33015257 GAACTTGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 19 0.61
14 2 0.06
16 10 0.32
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (12 bp):
AAATTAATTTGG
Found at i:33015474 original size:83 final size:83
Alignment explanation
Indices: 33015387--33015743 Score: 608
Period size: 83 Copynumber: 4.3 Consensus size: 83
33015377 AAAAAGATAG
* * *
33015387 TTATTATATTATAATTTTTATCATATAATGTATTGATTTGATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
**
33015452 ATCTTTAAATAAATTTTT
66 ATCTTTAAATAAATAATT
*
33015470 TTATTATATTACATTTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
*
33015535 ATCTTTAAATAAAAAATT
66 ATCTTTAAATAAATAATT
33015553 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
33015618 ATCTTTAAATAAA-AATT
66 ATCTTTAAATAAATAATT
*
33015635 TTATTATATTATAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
**
33015700 ATCTTTAAATAAATTTTT
66 ATCTTTAAATAAATAATT
*
33015718 TTATTGTATTACAATTTTTATCATAT
1 TTATTATATTACAATTTTTATCATAT
33015744 TTTATATTTA
Statistics
Matches: 260, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
82 81 0.31
83 179 0.69
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.53
Consensus pattern (83 bp):
TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
ATCTTTAAATAAATAATT
Found at i:33015617 original size:44 final size:44
Alignment explanation
Indices: 33015568--33015699 Score: 102
Period size: 44 Copynumber: 3.1 Consensus size: 44
33015558 ATATTACAAT
33015568 TTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAA
1 TTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAA
* ** * * ** *
33015612 --TT-T--TAT-ATCT-TT-AAATAAAAATTTTATTATATTA-TAA
1 TTTTATCATATAATGTGTTGATTTGACAA-TACAATAT-TTATTAA
33015649 TTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAA
1 -TTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAA
33015694 TTTTAT
1 TTTTAT
33015700 ATCTTTAAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 24
0.60 0.16 0.24
Matches are distributed among these distances:
36 5 0.08
37 10 0.17
38 6 0.10
39 3 0.05
40 2 0.03
41 2 0.03
42 2 0.03
43 3 0.05
44 12 0.20
45 10 0.17
46 5 0.08
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (44 bp):
TTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAA
Found at i:33015710 original size:165 final size:166
Alignment explanation
Indices: 33015387--33015743 Score: 608
Period size: 165 Copynumber: 2.2 Consensus size: 166
33015377 AAAAAGATAG
* *
33015387 TTATTATATTATAATTTTTATCATATAATGTATTGATTTGATAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
** *
33015452 ATCTTTAAATAAATTTTTTTATTATATTACATTTTTTATCATATAATGTGTTGATTTGACAATAC
66 ATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
33015517 AATATTTATTAATTTTATATCTTTAAATAAAAAATT
131 AATATTTATTAATTTTATATCTTTAAATAAAAAATT
*
33015553 TTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATACAATATTTATTAATTTTAT
1 TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
*
33015618 ATCTTTAAATAAA-AATTTTATTATATTATAATTTTTATCATATAATGTGTTGATTTGACAATAC
66 ATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
***
33015682 AATATTTATTAATTTTATATCTTTAAATAAATTTTT
131 AATATTTATTAATTTTATATCTTTAAATAAAAAATT
*
33015718 TTATTGTATTACAATTTTTATCATAT
1 TTATTATATTACAATTTTTATCATAT
33015744 TTTATATTTA
Statistics
Matches: 180, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
165 105 0.58
166 75 0.42
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.53
Consensus pattern (166 bp):
TTATTATATTACAATTTTTATCATATAATGTATTGATTTGACAATACAATATTTATTAATTTTAT
ATCTTTAAATAAATAATTTTATTATATTACAATTTTTATCATATAATGTGTTGATTTGACAATAC
AATATTTATTAATTTTATATCTTTAAATAAAAAATT
Found at i:33015934 original size:20 final size:20
Alignment explanation
Indices: 33015909--33015947 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
33015899 CTCGAGACTG
*
33015909 CCGTTGATCGCTGTTGACCA
1 CCGTTGATCGCCGTTGACCA
33015929 CCGTTGATCGCCGTTGACC
1 CCGTTGATCGCCGTTGACC
33015948 GACTTTGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.33, G:0.26, T:0.28
Consensus pattern (20 bp):
CCGTTGATCGCCGTTGACCA
Found at i:33015960 original size:20 final size:20
Alignment explanation
Indices: 33015937--33015993 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
33015927 CACCGTTGAT
*
33015937 CGCCGTTGACCGACTTTGTC
1 CGCCGTTGATCGACTTTGTC
33015957 CGCCGTTGATCGACTTTGTC
1 CGCCGTTGATCGACTTTGTC
33015977 CGCCGTTGATCGACTTT
1 CGCCGTTGATCGACTTT
33015994 CATCCATCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.11, C:0.32, G:0.25, T:0.33
Consensus pattern (20 bp):
CGCCGTTGATCGACTTTGTC
Found at i:33016868 original size:19 final size:20
Alignment explanation
Indices: 33016815--33016868 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
33016805 CTCGATTTTA
*
33016815 TATTTTTTAAATTTTATTAAT
1 TATTTTTT-AATTTTACTAAT
*
33016836 TATTGTTTT--TTTTTCTAAT
1 TATT-TTTTAATTTTACTAAT
33016855 TATTTTTTAATTTT
1 TATTTTTTAATTTT
33016869 TCAGATGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 4 0.14
21 4 0.14
22 4 0.14
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (20 bp):
TATTTTTTAATTTTACTAAT
Found at i:33018257 original size:30 final size:30
Alignment explanation
Indices: 33018195--33018260 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
33018185 TTCCTTTACT
* *
33018195 TTTTAAATTTAATTTGTAATTTCGTTTTTA
1 TTTTAAATTTAATTTGTAATATCGTTTATA
33018225 TTTTAAATTTAATTTCG-AATATC-TTGTATA
1 TTTTAAATTTAATTT-GTAATATCGTT-TATA
33018255 TTTTAA
1 TTTTAA
33018261 TTTTTCTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 2 0.06
30 29 0.91
31 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (30 bp):
TTTTAAATTTAATTTGTAATATCGTTTATA
Found at i:33019173 original size:30 final size:31
Alignment explanation
Indices: 33019137--33019195 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
33019127 GGCCAACACA
33019137 AAAAAAATTTG-AATTTTTTTCTCGAGAAAC
1 AAAAAAATTTGAAATTTTTTTCTCGAGAAAC
33019167 AAAAAAATTTGAAATTTTTTTCTCGAGAA
1 AAAAAAATTTGAAATTTTTTTCTCGAGAA
33019196 CAAGGGGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 11 0.39
31 17 0.61
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.37
Consensus pattern (31 bp):
AAAAAAATTTGAAATTTTTTTCTCGAGAAAC
Found at i:33019262 original size:60 final size:62
Alignment explanation
Indices: 33019167--33019349 Score: 174
Period size: 61 Copynumber: 3.1 Consensus size: 62
33019157 CTCGAGAAAC
***
33019167 AAAAAAATTTGAAATTTTTTTCTCGAGAACAA-GGGGTGTCGGCCATTTGATGGCCAACACT
1 AAAAAAATTTGAAATTTTTTTCTCGAGAACAAGGGGGTGTCGGCCATGCAATGGCCAACACT
* * *
33019228 AAAAAATTTTG-AATTTTTTTCTCGAGAA-ATAGGGGGTGTCGGTCATGCAATGGCCAACACCC
1 AAAAAAATTTGAAATTTTTTTCTCGAGAACA-AGGGGGTGTCGGCCATGCAATGGCCAACA-CT
* * *
33019290 AAAAAAA--T--AATTTTTTT-T--A-AA-ATAGGGAGTGTCGGCCATGCAATGGTCAACACC
1 AAAAAAATTTGAAATTTTTTTCTCGAGAACA-AGGGGGTGTCGGCCATGCAATGGCCAACACT
33019344 AAAAAA
1 AAAAAA
33019350 TGCAATATTT
Statistics
Matches: 109, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
54 8 0.07
55 30 0.28
56 1 0.01
58 1 0.01
59 10 0.09
60 19 0.17
61 33 0.30
62 7 0.06
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (62 bp):
AAAAAAATTTGAAATTTTTTTCTCGAGAACAAGGGGGTGTCGGCCATGCAATGGCCAACACT
Found at i:33019330 original size:55 final size:55
Alignment explanation
Indices: 33019254--33019371 Score: 159
Period size: 55 Copynumber: 2.1 Consensus size: 55
33019244 TTTTCTCGAG
* *
33019254 AAATAGGGGGTGTCGGTCATGCAATGGCCAACACCCAAAAAAAT-AAT-TTTTTTTA
1 AAATAGGGAGTGTCGGCCATGCAATGGCCAACA-CC-AAAAAATCAATATTTTTTTA
* *
33019309 AAATAGGGAGTGTCGGCCATGCAATGGTCAACACCAAAAAATGCAATATTTTTTTG
1 AAATAGGGAGTGTCGGCCATGCAATGGCCAACACCAAAAAAT-CAATATTTTTTTA
33019365 AAATAGG
1 AAATAGG
33019372 CATGGCCAAC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 7 0.12
54 2 0.04
55 33 0.59
56 14 0.25
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (55 bp):
AAATAGGGAGTGTCGGCCATGCAATGGCCAACACCAAAAAATCAATATTTTTTTA
Found at i:33027435 original size:45 final size:45
Alignment explanation
Indices: 33027385--33027477 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
33027375 ATTACTCTTT
33027385 AAATAACAATAAAATTACTATATTGATATTCTAATTTTTTAAATA
1 AAATAACAATAAAATTACTATATTGATATTCTAATTTTTTAAATA
33027430 AAATAACAATAAAATTACTATATTGATATTCTAATTTTTTAAATA
1 AAATAACAATAAAATTACTATATTGATATTCTAATTTTTTAAATA
33027475 AAA
1 AAA
33027478 CCATTAAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (45 bp):
AAATAACAATAAAATTACTATATTGATATTCTAATTTTTTAAATA
Found at i:33033150 original size:6 final size:6
Alignment explanation
Indices: 33033139--33033167 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
33033129 AATTGAAGGA
33033139 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
33033168 ACAACGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:33035378 original size:11 final size:11
Alignment explanation
Indices: 33035362--33035393 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
33035352 CAGTCCCAAA
33035362 TCTATTTTTAT
1 TCTATTTTTAT
33035373 TCTA-TTTTA-
1 TCTATTTTTAT
33035382 TCTATTTTTAT
1 TCTATTTTTAT
33035393 T
1 T
33035394 TTTTCCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.21
10 10 0.53
11 5 0.26
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (11 bp):
TCTATTTTTAT
Found at i:33036165 original size:57 final size:54
Alignment explanation
Indices: 33036057--33036173 Score: 137
Period size: 57 Copynumber: 2.1 Consensus size: 54
33036047 TACGGAACAA
* * *
33036057 ACAGAGAGTACCAAAGTACTAACAGAGAGCACATATGTGCTGGGTAACAGAGAGCAC
1 ACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTAC---GTAACAGAGAGCAC
33036114 ACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTAC-TAATCAGAGAGCAC
1 ACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTACGTAA-CAGAGAGCAC
33036171 ACA
1 ACA
33036174 CAGTGCTAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
56 3 0.06
57 24 0.45
58 11 0.21
59 11 0.21
60 4 0.08
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.13
Consensus pattern (54 bp):
ACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTACGTAACAGAGAGCAC
Found at i:33036167 original size:25 final size:23
Alignment explanation
Indices: 33036115--33036196 Score: 119
Period size: 23 Copynumber: 3.5 Consensus size: 23
33036105 AGAGAGCACA
*
33036115 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTACTAAT
33036138 CAGAGAGCACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTACTAAT
* *
33036161 CAGAGAGCACACACAGTGCTAAT
1 CAGAGAGCACACAAAGTACTAAT
33036184 AACAGAGAGCACA
1 --CAGAGAGCACA
33036197 AGACGTGCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 43 0.80
25 11 0.20
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.12
Consensus pattern (23 bp):
CAGAGAGCACACAAAGTACTAAT
Found at i:33036204 original size:25 final size:23
Alignment explanation
Indices: 33036114--33036216 Score: 100
Period size: 23 Copynumber: 4.4 Consensus size: 23
33036104 CAGAGAGCAC
* * *
33036114 ACAGAGAGTACACAAAGTACTAA
1 ACAGAGAGCACACACAGTGCTAA
* * *
33036137 TCAGAGAGCACACAAAGTACTAA
1 ACAGAGAGCACACACAGTGCTAA
*
33036160 TCAGAGAGCACACACAGTGCTAATA
1 ACAGAGAGCACACACAGTGCT-A-A
*
33036185 ACAGAGAGCACA-AGACGTGCTAA
1 ACAGAGAGCACACACA-GTGCTAA
33036208 ACAGAGAGC
1 ACAGAGAGC
33036217 GCGCTAGTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 50 0.70
24 4 0.06
25 17 0.24
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.12
Consensus pattern (23 bp):
ACAGAGAGCACACACAGTGCTAA
Found at i:33036213 original size:48 final size:46
Alignment explanation
Indices: 33036114--33036216 Score: 118
Period size: 48 Copynumber: 2.2 Consensus size: 46
33036104 CAGAGAGCAC
*
33036114 ACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTACTAA
1 ACAGAGAGCACACAAAGTACTAATCAGAGAGCACACAAAGTACTAA
* * * * *
33036160 TCAGAGAGCACACACAGTGCTAATAACAGAGAGCACA-AGACGTGCTAA
1 ACAGAGAGCACACAAAGTACTAAT--CAGAGAGCACACA-AAGTACTAA
33036208 ACAGAGAGC
1 ACAGAGAGC
33036217 GCGCTAGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
46 20 0.43
47 1 0.02
48 26 0.55
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.12
Consensus pattern (46 bp):
ACAGAGAGCACACAAAGTACTAATCAGAGAGCACACAAAGTACTAA
Found at i:33044163 original size:6 final size:7
Alignment explanation
Indices: 33044146--33044170 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
33044136 TACAACATTT
33044146 AAAAAAC
1 AAAAAAC
33044153 AAAAAAC
1 AAAAAAC
33044160 AAAAAAC
1 AAAAAAC
33044167 AAAA
1 AAAA
33044171 CCCTCTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:33045234 original size:29 final size:30
Alignment explanation
Indices: 33045148--33045236 Score: 108
Period size: 31 Copynumber: 3.0 Consensus size: 30
33045138 CATTAAACCA
* * *
33045148 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCATGTATACAATTGCACC
* * *
33045178 ACAATTAGAGTTTCATGTGTATAATTGCACC
1 A-AATTAAAGTTTCATGTATACAATTGCACC
33045209 AAATTAAAGTTT-ATGTATACAATTGCAC
1 AAATTAAAGTTTCATGTATACAATTGCAC
33045237 ATTCAATCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
29 14 0.29
30 11 0.22
31 24 0.49
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.35
Consensus pattern (30 bp):
AAATTAAAGTTTCATGTATACAATTGCACC
Found at i:33053943 original size:15 final size:17
Alignment explanation
Indices: 33053924--33053963 Score: 66
Period size: 15 Copynumber: 2.5 Consensus size: 17
33053914 TATTTATTAA
33053924 AAAATTATTAAAAT-AT
1 AAAATTATTAAAATAAT
33053940 -AAATTATTAAAATAAT
1 AAAATTATTAAAATAAT
33053956 AAAATTAT
1 AAAATTAT
33053964 ATTTTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATTATTAAAATAAT
Found at i:33061791 original size:29 final size:28
Alignment explanation
Indices: 33061758--33061819 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
33061748 TTAATATAAT
*
33061758 ATTTGGTACCTGAACTTACATTTTTA-CTA
1 ATTTGGTACCTAAACTT--ATTTTTACCTA
*
33061787 ATTTGGTACCTAAACTTTTTTTTACCTA
1 ATTTGGTACCTAAACTTATTTTTACCTA
33061815 ATTTG
1 ATTTG
33061820 ACAACTTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 6 0.20
28 8 0.27
29 16 0.53
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (28 bp):
ATTTGGTACCTAAACTTATTTTTACCTA
Found at i:33061871 original size:27 final size:27
Alignment explanation
Indices: 33061841--33061892 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
33061831 CTTTTTTGTT
* *
33061841 AATTTGGTACCTAATTTTTTTAAATTC
1 AATTTGGTACCTAAATTTATTAAATTC
33061868 AATTTGGTACCTAAATTTATTAAAT
1 AATTTGGTACCTAAATTTATTAAAT
33061893 ATTATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.48
Consensus pattern (27 bp):
AATTTGGTACCTAAATTTATTAAATTC
Found at i:33062135 original size:31 final size:31
Alignment explanation
Indices: 33062083--33062159 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
33062073 CCCAAAAAAT
* * *
33062083 TTTAAGTACCAACTTAAAAAAATGTGTCAAG
1 TTTAGGTACCAAATTAAAAAAAAGTGTCAAG
*
33062114 TTTAGGTACCAAATTAGAAAAAAGTGTCAAG
1 TTTAGGTACCAAATTAAAAAAAAGTGTCAAG
33062145 TTT-GAGTACCAAATT
1 TTTAG-GTACCAAATT
33062160 GGATAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (31 bp):
TTTAGGTACCAAATTAAAAAAAAGTGTCAAG
Found at i:33062193 original size:90 final size:89
Alignment explanation
Indices: 33062025--33062194 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 89
33062015 TTAAAAAATA
*
33062025 TTAGATACCAAATTAGAAAAAAGAGTAAAGTTCAAACACCAAATTGGACCCAAAAAATTTTAAGT
1 TTAGATACCAAATTAGAAAAAAGAGTAAAGTTCAAACACCAAATTGGA-CCAAAAAAATTTAAGT
*
33062090 ACCAACTTAAAAAAATGTGTCAAGT
65 ACCAAATTAAAAAAATGTGTCAAGT
* * * ** ** *
33062115 TTAGGTACCAAATTAGAAAAAAGTGTCAAGTTTGAGTACCAAATTGGA-TAAAAAAATTTAAGTA
1 TTAGATACCAAATTAGAAAAAAGAGTAAAGTTCAAACACCAAATTGGACCAAAAAAATTTAAGTA
33062179 CCAAATTAAGAAAAAT
66 CCAAATTAA-AAAAAT
33062195 ATCAAGTTCA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
88 22 0.32
89 6 0.09
90 41 0.59
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.25
Consensus pattern (89 bp):
TTAGATACCAAATTAGAAAAAAGAGTAAAGTTCAAACACCAAATTGGACCAAAAAAATTTAAGTA
CCAAATTAAAAAAATGTGTCAAGT
Found at i:33062688 original size:17 final size:17
Alignment explanation
Indices: 33062663--33062697 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
33062653 ATATATAATT
33062663 AAATATTTAATTTAAGC
1 AAATATTTAATTTAAGC
*
33062680 AAATTTTTAATTTAAGC
1 AAATATTTAATTTAAGC
33062697 A
1 A
33062698 TAGTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (17 bp):
AAATATTTAATTTAAGC
Found at i:33072701 original size:15 final size:16
Alignment explanation
Indices: 33072681--33072713 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33072671 ATTTTCTATT
*
33072681 TATTTT-AATATTAAA
1 TATTTTAAAAATTAAA
33072696 TATTTTAAAAATTAAA
1 TATTTTAAAAATTAAA
33072712 TA
1 TA
33072714 GCATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTTAAAAATTAAA
Found at i:33078340 original size:31 final size:31
Alignment explanation
Indices: 33078305--33078366 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
33078295 GAGAGATAAA
*
33078305 TAATTAAATTAGATAGTATTTA-TATTTAATT
1 TAATTAAATTAGATAATATTTATTA-TTAATT
* *
33078336 TAATTTAATTATATAATATTTATTATTAATT
1 TAATTAAATTAGATAATATTTATTATTAATT
33078367 ATTTATACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (31 bp):
TAATTAAATTAGATAATATTTATTATTAATT
Found at i:33078499 original size:23 final size:22
Alignment explanation
Indices: 33078449--33078501 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 22
33078439 TTTTTTTCGT
33078449 ATTATT-TATATTTTTATAATA
1 ATTATTATATATTTTTATAATA
33078470 ATTATTATATATTTTT-TAATA
1 ATTATTATATATTTTTATAATA
33078491 ATCTCATTATA
1 AT-T-ATTATA
33078502 GGTTTTAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 13 0.45
22 10 0.34
23 6 0.21
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTATTATATATTTTTATAATA
Found at i:33078507 original size:23 final size:22
Alignment explanation
Indices: 33078449--33078507 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
33078439 TTTTTTTCGT
*
33078449 ATTATT-TATATTTTTATAATA
1 ATTATTATAGATTTTTATAATA
*
33078470 ATTATTATATATTTTT-TAATA
1 ATTATTATAGATTTTTATAATA
*
33078491 ATCTCATTATAGGTTTT
1 AT-T-ATTATAGATTTT
33078508 AATCATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.39
22 10 0.30
23 10 0.30
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (22 bp):
ATTATTATAGATTTTTATAATA
Found at i:33087619 original size:2 final size:2
Alignment explanation
Indices: 33087612--33087641 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
33087602 AGAGGAGGCC
*
33087612 CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
33087642 GTAAATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:33087704 original size:6 final size:6
Alignment explanation
Indices: 33087688--33087724 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
33087678 GTTTTAAAAC
33087688 AAAGAAG AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG
1 AAAG-AG AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG
33087725 TGTTTAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGAG
Found at i:33089423 original size:20 final size:20
Alignment explanation
Indices: 33089382--33089435 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
33089372 AATGAAATTT
* *
33089382 ATTTAAAATAAAAATATTAA
1 ATTTAAATTAAAAATATAAA
33089402 ATTTAAATTAAAAAT-TAAAA
1 ATTTAAATTAAAAATAT-AAA
33089422 ATTATAATATTAAA
1 ATT-TAA-ATTAAA
33089436 TATTTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 19 0.66
21 3 0.10
22 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTTAAATTAAAAATATAAA
Found at i:33089435 original size:15 final size:15
Alignment explanation
Indices: 33089406--33089452 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
33089396 TATTAAATTT
*
33089406 AAATTA-AAAATTAA
1 AAATTATAATATTAA
33089420 AAATTATAATATTAA
1 AAATTATAATATTAA
*
33089435 ATATT-TAAATATTAA
1 AAATTAT-AATATTAA
33089450 AAA
1 AAA
33089453 AACACTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 7 0.25
15 21 0.75
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATTATAATATTAA
Found at i:33089509 original size:21 final size:21
Alignment explanation
Indices: 33089485--33089533 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
33089475 ATTGAATGAT
*
33089485 CACTGATCGGTGCTGATCAAC
1 CACTGATCGATGCTGATCAAC
* * **
33089506 CACTAATCGATGTTGATGGAC
1 CACTGATCGATGCTGATCAAC
33089527 CACTGAT
1 CACTGAT
33089534 TAGCCGCATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (21 bp):
CACTGATCGATGCTGATCAAC
Found at i:33099765 original size:33 final size:34
Alignment explanation
Indices: 33099695--33099780 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 34
33099685 TAAATATATA
* * *
33099695 AACAATCGATTCAAAAAAAGTAGTATTTCAACAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
33099729 AACAATCGATTCAAAAGAAGCA-TATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
**
33099762 AACAATTTATTCAAAAGAA
1 AACAATCGATTCAAAAGAA
33099781 AAAGAAACAA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 27 0.57
34 20 0.43
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.24
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
Found at i:33100255 original size:21 final size:21
Alignment explanation
Indices: 33100212--33100255 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
33100202 ATTACATGAC
*
33100212 ATAATCTCGAAATATCATATA
1 ATAATCTCGAAATATCACATA
* * *
33100233 ATAATCTTGAAGTATCACGTA
1 ATAATCTCGAAATATCACATA
33100254 AT
1 AT
33100256 CACACCTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAATCTCGAAATATCACATA
Found at i:33102744 original size:14 final size:14
Alignment explanation
Indices: 33102720--33102762 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
33102710 CAGCCCGACC
*
33102720 TGACCCGTTGACTGT
1 TGACTCGTTGACT-T
33102735 TGA-TCGTTGACTT
1 TGACTCGTTGACTT
*
33102748 TGACTCGATGACTT
1 TGACTCGTTGACTT
33102762 T
1 T
33102763 TTCTGGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 18 0.72
15 3 0.12
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (14 bp):
TGACTCGTTGACTT
Found at i:33113942 original size:17 final size:16
Alignment explanation
Indices: 33113903--33113940 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
33113893 AATAGATCAT
33113903 TAAAAATTCATAAAAA
1 TAAAAATTCATAAAAA
33113919 TAAAAATT-ATTAAAAA
1 TAAAAATTCA-TAAAAA
33113935 TAAAAA
1 TAAAAA
33113941 ATCTGGTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAATTCATAAAAA
Found at i:33118720 original size:40 final size:40
Alignment explanation
Indices: 33118665--33118761 Score: 194
Period size: 40 Copynumber: 2.4 Consensus size: 40
33118655 TTGAGCATAA
33118665 CTTCCTAATGCAAATTAGCATAACACGGATATTTCAATTT
1 CTTCCTAATGCAAATTAGCATAACACGGATATTTCAATTT
33118705 CTTCCTAATGCAAATTAGCATAACACGGATATTTCAATTT
1 CTTCCTAATGCAAATTAGCATAACACGGATATTTCAATTT
33118745 CTTCCTAATGCAAATTA
1 CTTCCTAATGCAAATTA
33118762 TAGATATATC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (40 bp):
CTTCCTAATGCAAATTAGCATAACACGGATATTTCAATTT
Found at i:33122255 original size:20 final size:20
Alignment explanation
Indices: 33122227--33122269 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
33122217 TCTATATGAA
* * *
33122227 TTTATCAAAATATCTAACAT
1 TTTACCAAAATAACTAAAAT
33122247 TTTACCAAAATAACTAAAAT
1 TTTACCAAAATAACTAAAAT
33122267 TTT
1 TTT
33122270 GGATTTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTACCAAAATAACTAAAAT
Found at i:33122377 original size:66 final size:67
Alignment explanation
Indices: 33122247--33122386 Score: 169
Period size: 66 Copynumber: 2.1 Consensus size: 67
33122237 TATCTAACAT
** * * * **
33122247 TTTACCAAAATAACTAAAATTTTGGATTTATTAAAATATTTAAAACTTTACCGATATTTATATTG
1 TTTACCAAAATAACTAAAATTTTGGATTTACCAAAATATCTAAAAATTCACCGATAGATATATTG
33122312 -C
66 AC
* *
33122313 TTTACCAAAATAA-TAAACATTTTGGATTTGCCAAAATATCTAAAAATTCACCGATAGATCTATT
1 TTTACCAAAATAACTAAA-ATTTTGGATTTACCAAAATATCTAAAAATTCACCGATAGATATATT
33122377 GAC
65 GAC
33122380 -TTACCAA
1 TTTACCAA
33122387 TATTTATATA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
65 4 0.06
66 58 0.92
67 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.37
Consensus pattern (67 bp):
TTTACCAAAATAACTAAAATTTTGGATTTACCAAAATATCTAAAAATTCACCGATAGATATATTG
AC
Found at i:33124205 original size:2 final size:2
Alignment explanation
Indices: 33124198--33124225 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33124188 TATATTTTTC
33124198 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33124226 TGAAAATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33132820 original size:58 final size:59
Alignment explanation
Indices: 33132750--33133236 Score: 412
Period size: 58 Copynumber: 8.3 Consensus size: 59
33132740 TGGATGCCCG
* *
33132750 GGGGTAAAATGGTAATTTTTAGG-AAAATCGAGGTCAAAAATGAAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTT-GGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
** * *
33132809 GGGGT-AAATGGTAATTTTTGGTCAAATCGAGGTTAAAAA-CGAGATTTTGGAAAG-TTC
1 GGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGA-ATTTTGGAAAGTTTA
* ** * * *
33132866 GGAGGTAAAACGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAAG-TTC
1 GG-GGTAAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
* * ** *
33132924 GAGAGTAAAATGGTAATTTTTGGAAAAATCAAGGTT-AAAATGGAATTTTAAAAAG-TTC
1 G-GGGTAAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
* * * * *
33132982 GACGGTCAAAATAGTAATTTTTAGG-AAAATCGAGATAAAAAATGGAATTTTGGAAAGTTCA
1 G-GGGT-AAAATGGTAATTTTT-GGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
33133043 -GGGTCAAAATGGTAGTTTTTGGAAAAATTGGGGTTAAAAATGGAATTTTGGAAAGTTTA
1 GGGGT-AAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
33133102 -GGGTCAAAATAGTAA-TTTTGGAAAAATC-ATGGTCAAAAATGGAATTTTGGAAAG-TTC
1 GGGGT-AAAATGGTAATTTTTGGAAAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTTTA
** * *** ** * *
33133159 GAGATTAAAATAGTAATTTTT-GAAGTTTTAAGGTCAAAAATGGGATTTTGGAAAGTTTA
1 G-GGGTAAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
*
33133218 GGGTTAAAATGG-AATTTTT
1 GGGGTAAAATGGTAATTTTT
33133237 TAAAGTTTCA
Statistics
Matches: 359, Mismatches: 51, Indels: 38
0.80 0.11 0.08
Matches are distributed among these distances:
57 16 0.04
58 198 0.55
59 125 0.35
60 19 0.05
61 1 0.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTA
Found at i:33132884 original size:29 final size:29
Alignment explanation
Indices: 33132752--33133178 Score: 129
Period size: 29 Copynumber: 14.6 Consensus size: 29
33132742 GATGCCCGGG
*
33132752 GGTAAAATGGTAATTTTTAGGAAA-ATC-GA
1 GGTAAAATGGTAA-TTTT-GGAAAGTTCGGA
* *
33132781 GGTCAAAAAT-GAAATTTTGGAAAGTTTAGG-
1 GGT--AAAATGGTAATTTTGGAAAG-TTCGGA
33132811 GGT-AAATGGTAATTTTTGGTCAAA--TC-GA
1 GGTAAAATGGTAA-TTTTGG--AAAGTTCGGA
**
33132839 GGTTAAAAACG-AGATTTTGGAAAGTTCGGA
1 GG-TAAAATGGTA-ATTTTGGAAAGTTCGGA
*
33132869 GGTAAAACGGTAATTTTGGTGAAA--TCGG-
1 GGTAAAATGGTAATTTT-G-GAAAGTTCGGA
*
33132897 GGTTAAAAATGG-AATTTTAGAAAGTTC-GA
1 GG-T-AAAATGGTAATTTTGGAAAGTTCGGA
** *
33132926 GAGTAAAATGGTAATTTTTGGAAAAATC-AA
1 G-GTAAAATGGTAA-TTTTGGAAAGTTCGGA
**
33132956 GGTTAAAATGG-AATTTTAAAAAGTTC-GA
1 GG-TAAAATGGTAATTTTGGAAAGTTCGGA
* *
33132984 CGGTCAAAATAGTAATTTTTAGGAAA-ATC-GA
1 -GGT-AAAATGGTAA-TTTT-GGAAAGTTCGGA
* *
33133015 GATAAAAAATGG-AATTTTGGAAAGTTCAG-
1 GGT--AAAATGGTAATTTTGGAAAGTTCGGA
* *
33133044 GGTCAAAATGGTAGTTTTTGGAAAAATT-GG-
1 GGT-AAAATGGTA-ATTTTGG-AAAGTTCGGA
**
33133074 GGTTAAAAATGG-AATTTTGGAAAGTTTAG-
1 GG-T-AAAATGGTAATTTTGGAAAGTTCGGA
* **
33133103 GGTCAAAATAGTAATTTTGGAAAAATC--A
1 GGT-AAAATGGTAATTTTGGAAAGTTCGGA
33133131 TGGTCAAAAATGG-AATTTTGGAAAGTTC-GA
1 -GGT--AAAATGGTAATTTTGGAAAGTTCGGA
* *
33133161 GATTAAAATAGTAATTTT
1 G-GTAAAATGGTAATTTT
33133179 TGAAGTTTTA
Statistics
Matches: 302, Mismatches: 48, Indels: 96
0.68 0.11 0.22
Matches are distributed among these distances:
27 12 0.04
28 62 0.21
29 115 0.38
30 70 0.23
31 40 0.13
32 3 0.01
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (29 bp):
GGTAAAATGGTAATTTTGGAAAGTTCGGA
Found at i:33133256 original size:29 final size:28
Alignment explanation
Indices: 33133020--33133256 Score: 172
Period size: 29 Copynumber: 8.2 Consensus size: 28
33133010 ATCGAGATAA
* *
33133020 AAAATGGAATTTTGGAAAGTTCAGGGTC
1 AAAATGGAATTTTGGAAAGTTTAGGGTT
* ** *
33133048 AAAATGGTAGTTTTTGGAAAAATTGGGGTT
1 AAAATGG-A-ATTTTGGAAAGTTTAGGGTT
*
33133078 AAAAATGGAATTTTGGAAAGTTTAGGGTC
1 -AAAATGGAATTTTGGAAAGTTTAGGGTT
* ** * * *
33133107 AAAATAGTAATTTTGGAAAAATCATGGTCA
1 AAAAT-GGAATTTTGGAAAGTTTAGGGT-T
* *
33133137 AAAATGGAATTTTGGAAAG-TTCGAGATT
1 AAAATGGAATTTTGGAAAGTTTAG-GGTT
* * * *
33133165 AAAATAGTAATTTTTG-AAGTTTTAAGGTCA
1 AAAAT-GGAATTTTGGAAAG-TTTAGGGT-T
*
33133195 AAAATGGGATTTTGGAAAGTTTAGGGTT
1 AAAATGGAATTTTGGAAAGTTTAGGGTT
**
33133223 AAAATGGAATTTTTTAAAGTTTCAGGGTT
1 AAAATGGAATTTTGGAAAGTTT-AGGGTT
33133252 AAAAT
1 AAAAT
33133257 ATAATTTCTG
Statistics
Matches: 159, Mismatches: 38, Indels: 23
0.72 0.17 0.10
Matches are distributed among these distances:
28 40 0.25
29 82 0.52
30 30 0.19
31 7 0.04
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.34
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTTAGGGTT
Found at i:33134411 original size:16 final size:16
Alignment explanation
Indices: 33134390--33134424 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
33134380 CGTATTTCTT
*
33134390 TTATTATTATTTAGTA
1 TTATTATTATTTACTA
33134406 TTATTATTATTTACTA
1 TTATTATTATTTACTA
33134422 TTA
1 TTA
33134425 CAAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TTATTATTATTTACTA
Found at i:33134438 original size:20 final size:20
Alignment explanation
Indices: 33134413--33134465 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
33134403 GTATTATTAT
33134413 TATTTACTATTACAAAAAAA
1 TATTTACTATTACAAAAAAA
* * *
33134433 TATTTATTATTATAAAAATA
1 TATTTACTATTACAAAAAAA
*
33134453 TTTATTACTATTA
1 TAT-TTACTATTA
33134466 TTGTCATTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTTACTATTACAAAAAAA
Found at i:33134854 original size:27 final size:27
Alignment explanation
Indices: 33134824--33134907 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
33134814 TTCCAAAGAT
33134824 GGGTTCGTAACTTAATTTTTCAGAACA
1 GGGTTCGTAACTTAATTTTTCAGAACA
* ** * **
33134851 GGGTT-TTATGTTGA-TTTTCAGAATT
1 GGGTTCGTAACTTAATTTTTCAGAACA
*
33134876 GGGTTCGTAACTTAATTCTTCAGAACA
1 GGGTTCGTAACTTAATTTTTCAGAACA
33134903 GGGTT
1 GGGTT
33134908 TTGTGTTGAT
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
25 14 0.33
26 10 0.24
27 18 0.43
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTTCGTAACTTAATTTTTCAGAACA
Found at i:33134869 original size:25 final size:25
Alignment explanation
Indices: 33134840--33134925 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
33134830 GTAACTTAAT
33134840 TTTTCAGAACAGGGTTTTATGTTGA
1 TTTTCAGAACAGGGTTTTATGTTGA
** * ** *
33134865 TTTTCAGAATTGGGTTCGTAACTTAA
1 TTTTCAGAACAGGGTT-TTATGTTGA
*
33134891 TTCTTCAGAACAGGGTTTTGTGTTGA
1 TT-TTCAGAACAGGGTTTTATGTTGA
33134917 TTTTCAGAA
1 TTTTCAGAA
33134926 TTGGGTTCAT
Statistics
Matches: 46, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
25 21 0.46
26 13 0.28
27 12 0.26
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.43
Consensus pattern (25 bp):
TTTTCAGAACAGGGTTTTATGTTGA
Found at i:33134884 original size:52 final size:52
Alignment explanation
Indices: 33134823--33134938 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
33134813 TTTCCAAAGA
*
33134823 TGGGTTCGTAACTTAATTTTTCAGAACAGGGTTTTATGTTGATTTTCAGAAT
1 TGGGTTCGTAACTTAATTCTTCAGAACAGGGTTTTATGTTGATTTTCAGAAT
*
33134875 TGGGTTCGTAACTTAATTCTTCAGAACAGGGTTTTGTGTTGATTTTCAGAAT
1 TGGGTTCGTAACTTAATTCTTCAGAACAGGGTTTTATGTTGATTTTCAGAAT
*
33134927 TGGGTTCATAAC
1 TGGGTTCGTAAC
33134939 CCTTACAACA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.42
Consensus pattern (52 bp):
TGGGTTCGTAACTTAATTCTTCAGAACAGGGTTTTATGTTGATTTTCAGAAT
Found at i:33135323 original size:17 final size:18
Alignment explanation
Indices: 33135301--33135349 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
33135291 ATATGAATTC
33135301 AAATAAATTTTAA-TTTA
1 AAATAAATTTTAATTTTA
33135318 AAATAAA-TTTAATTTTTA
1 AAATAAATTTTAA-TTTTA
33135336 AAATAAATCTTTAA
1 AAATAAAT-TTTAA
33135350 AATGGGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.18
17 7 0.25
18 11 0.39
20 5 0.18
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATAAATTTTAATTTTA
Found at i:33138374 original size:19 final size:20
Alignment explanation
Indices: 33138336--33138374 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
33138326 CATGTCAATG
* *
33138336 ACATATGTTATGAAAGATAT
1 ACATATGTTAAGAAAAATAT
33138356 ACATAT-TTAAGAAAAATAT
1 ACATATGTTAAGAAAAATAT
33138375 TCAAGCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.33
Consensus pattern (20 bp):
ACATATGTTAAGAAAAATAT
Found at i:33139320 original size:24 final size:24
Alignment explanation
Indices: 33139301--33139353 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
33139291 CCCTCTTCTT
33139301 ACTCCCCTCAAATGCACTCTCCAA
1 ACTCCCCTCAAATGCACTCTCCAA
33139325 ACTCCCCTCAAATGCACTCTCCAA
1 ACTCCCCTCAAATGCACTCTCCAA
33139349 ACTCC
1 ACTCC
33139354 TTCCTCTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.28, C:0.47, G:0.04, T:0.21
Consensus pattern (24 bp):
ACTCCCCTCAAATGCACTCTCCAA
Found at i:33140293 original size:21 final size:24
Alignment explanation
Indices: 33140269--33140314 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
33140259 ATATTATAAT
33140269 AAATAAAAA-ATT-A-TTATTTTC
1 AAATAAAAAGATTAAGTTATTTTC
33140290 AAATAAAAAGATTAAGTTATTTTC
1 AAATAAAAAGATTAAGTTATTTTC
33140314 A
1 A
33140315 TTATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 3 0.14
23 1 0.05
24 9 0.41
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
AAATAAAAAGATTAAGTTATTTTC
Found at i:33145275 original size:18 final size:18
Alignment explanation
Indices: 33145252--33145293 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
33145242 ACTGCATATT
33145252 TATATAATTAAACATATGA
1 TATATAATTAAA-ATATGA
*
33145271 T-TATAATTATAATATGA
1 TATATAATTAAAATATGA
33145288 TATATA
1 TATATA
33145294 TATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 13 0.62
19 1 0.05
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (18 bp):
TATATAATTAAAATATGA
Found at i:33146268 original size:31 final size:29
Alignment explanation
Indices: 33146205--33146263 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
33146195 GTGCTGTTTG
*
33146205 TATTTTTAGAATTTAATCTCTATATTTTT
1 TATTTTAAGAATTTAATCTCTATATTTTT
*
33146234 TATTTTAAGAATTTAATCTCTCTATTTTT
1 TATTTTAAGAATTTAATCTCTATATTTTT
33146263 T
1 T
33146264 TTATTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.61
Consensus pattern (29 bp):
TATTTTAAGAATTTAATCTCTATATTTTT
Found at i:33161181 original size:17 final size:18
Alignment explanation
Indices: 33161159--33161192 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33161149 AATATTAAAT
*
33161159 TTCAAA-TATGTAGTTGG
1 TTCAAATTAAGTAGTTGG
33161176 TTCAAATTAAGTAGTTG
1 TTCAAATTAAGTAGTTG
33161193 AATAATGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (18 bp):
TTCAAATTAAGTAGTTGG
Found at i:33176266 original size:29 final size:29
Alignment explanation
Indices: 33176226--33176310 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 29
33176216 AATCGAGGTC
*
33176226 AAAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAAACGGAATTTTGGAAAGTTTAGGGGT
* *
33176255 -AAAACGGTAATTTTTTG-AAGTTT-CGGGT
1 AAAAACGG-AA-TTTTGGAAAGTTTAGGGGT
* *
33176283 CAAAAATGGAATTTTGGATAGTTTAGGG
1 -AAAAACGGAATTTTGGAAAGTTTAGGG
33176311 ACTAGAGAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
28 15 0.35
29 15 0.35
30 13 0.30
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAAACGGAATTTTGGAAAGTTTAGGGGT
Found at i:33176306 original size:58 final size:57
Alignment explanation
Indices: 33176161--33176310 Score: 178
Period size: 60 Copynumber: 2.6 Consensus size: 57
33176151 GGAAAATTCG
* * *
33176161 GGGTTAAAAATAGAATTTTGAAAAGTTT-GAGGGTAAAAAGGTAATTTTTGGGTGAAATC
1 GGGTCAAAAATGGAATTTTGGAAAGTTTAG-GGGTAAAAAGGTAATTTTT--GTGAAATC
* *
33176220 GAGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAACGGTAATTTTT-TGAAGTTTC
1 G-GGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAAGGTAATTTTTGTGAA--ATC
*
33176279 GGGTCAAAAATGGAATTTTGGATAGTTTAGGG
1 GGGTCAAAAATGGAATTTTGGAAAGTTTAGGG
33176311 ACTAGAGAGC
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
57 4 0.05
58 30 0.37
59 4 0.05
60 42 0.52
61 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (57 bp):
GGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAAAGGTAATTTTTGTGAAATC
Found at i:33176624 original size:31 final size:32
Alignment explanation
Indices: 33176575--33176636 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
33176565 TTACTGGGCC
* * *
33176575 AAATTAAAAATAATTAAAAGTATGAAAGGACT
1 AAATTAAAAACAATTAAAAATACGAAAGGACT
33176607 AAATT-AAAACAATTAAAAATACGAAAGGAC
1 AAATTAAAAACAATTAAAAATACGAAAGGAC
33176637 CAAACTCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.61, C:0.06, G:0.11, T:0.21
Consensus pattern (32 bp):
AAATTAAAAACAATTAAAAATACGAAAGGACT
Found at i:33178136 original size:25 final size:24
Alignment explanation
Indices: 33178106--33178154 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
33178096 ATATTTAAGC
33178106 TAAATTTAAATTTAAAAATAAATTT
1 TAAATTTAAATTT-AAAATAAATTT
*
33178131 TAAATTTAAATTTAAATTAAATTT
1 TAAATTTAAATTTAAAATAAATTT
33178155 AAACTTAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TAAATTTAAATTTAAAATAAATTT
Found at i:33178152 original size:5 final size:6
Alignment explanation
Indices: 33178106--33178157 Score: 70
Period size: 6 Copynumber: 8.7 Consensus size: 6
33178096 ATATTTAAGC
**
33178106 TAAATT TAAATT TAAAAA TAAATTT TAAATT TAAATT TAAA-T TAAATT
1 TAAATT TAAATT TAAATT TAAA-TT TAAATT TAAATT TAAATT TAAATT
33178154 TAAA
1 TAAA
33178158 CTTAGAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 5 0.12
6 31 0.77
7 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
TAAATT
Found at i:33196392 original size:11 final size:11
Alignment explanation
Indices: 33196380--33196470 Score: 62
Period size: 11 Copynumber: 8.1 Consensus size: 11
33196370 ACCAAATCAT
*
33196380 TTTAAATTTAT
1 TTTAAATTTAA
*
33196391 TTTAAAATTAAA
1 TTT-AAATTTAA
33196403 TTT--ATTTGAAA
1 TTTAAATTT--AA
*
33196414 TTTAAATTTAT
1 TTTAAATTTAA
*
33196425 TTTAATTTTAAA
1 TTTAAATTT-AA
33196437 TTT-AATTTAA
1 TTTAAATTTAA
* *
33196447 GTTTGAATTTAG
1 -TTTAAATTTAA
33196459 TTTAAATTTAA
1 TTTAAATTTAA
33196470 T
1 T
33196471 GTTATTATAA
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
9 3 0.05
10 2 0.03
11 34 0.55
12 19 0.31
13 4 0.06
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:33196403 original size:17 final size:17
Alignment explanation
Indices: 33196380--33196486 Score: 126
Period size: 17 Copynumber: 6.3 Consensus size: 17
33196370 ACCAAATCAT
33196380 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
33196397 ATTAAATTTATTTGAAA
1 TTTAAATTTATTTTAAA
*
33196414 TTTAAATTTATTTTAAT
1 TTTAAATTTATTTTAAA
* *
33196431 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
* *
33196448 TTTGAATTTAGTTTAAA
1 TTTAAATTTATTTTAAA
*
33196465 TTT-AATGTTATTATAAA
1 TTTAAAT-TTATTTTAAA
33196482 TTTAA
1 TTTAA
33196487 TAAAATGTCC
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
16 3 0.04
17 72 0.95
18 1 0.01
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:33196417 original size:23 final size:24
Alignment explanation
Indices: 33196391--33196441 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
33196381 TTAAATTTAT
33196391 TTTAAAATTAAATTT-ATTTGAAA
1 TTTAAAATTAAATTTAATTTGAAA
* * *
33196414 TTT-AAATTTATTTTAATTTTAAA
1 TTTAAAATTAAATTTAATTTGAAA
33196437 TTTAA
1 TTTAA
33196442 TTTAAGTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 9 0.39
23 13 0.57
24 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTAAAATTAAATTTAATTTGAAA
Found at i:33196429 original size:28 final size:26
Alignment explanation
Indices: 33196380--33196485 Score: 76
Period size: 28 Copynumber: 4.0 Consensus size: 26
33196370 ACCAAATCAT
* **
33196380 TTTAAATTTATTTTAAAATTAAATTTA
1 TTTAAATTTAATTT-ATTTTAAATTTA
33196407 TTTGAAATTTAAATTTATTTT-AA--T-
1 TTT-AAATTT-AATTTATTTTAAATTTA
* *
33196431 TTTAAATTTAATTTAAGTTTGAATTTA
1 TTTAAATTTAATTT-ATTTTAAATTTA
*
33196458 GTTTAAATTTAATGTTATTATAAATTTA
1 -TTTAAATTTAAT-TTATTTTAAATTTA
33196486 ATAAAATGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
22 5 0.08
23 10 0.16
24 5 0.08
25 1 0.02
26 1 0.02
27 5 0.08
28 30 0.48
29 6 0.10
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (26 bp):
TTTAAATTTAATTTATTTTAAATTTA
Found at i:33196457 original size:23 final size:22
Alignment explanation
Indices: 33196406--33196468 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 22
33196396 AATTAAATTT
*
33196406 ATTTGAAATTTAAATTTATTTTA
1 ATTT-AAATTTAAATTTATTTGA
33196429 ATTTTAAATTT-AATTTAAGTTTGA
1 A-TTTAAATTTAAATTT-A-TTTGA
*
33196453 ATTT-AGTTTAAATTTA
1 ATTTAAATTTAAATTTA
33196469 ATGTTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
22 10 0.29
23 16 0.47
24 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (22 bp):
ATTTAAATTTAAATTTATTTGA
Found at i:33198514 original size:30 final size:29
Alignment explanation
Indices: 33198476--33198876 Score: 372
Period size: 29 Copynumber: 13.8 Consensus size: 29
33198466 CCCTAAAGGT
*
33198476 CCCT-AAACTATCCAAAAATTATATTTTGA
1 CCCTCAAACT-TCCAAAAATTACATTTTGA
*
33198505 CCCTCAAACTTCTCCAAAATTACATTTTGA
1 CCCTCAAACTTC-CAAAAATTACATTTTGA
* ** * *
33198535 CCCTAAAACTTTTAAAAATTATATTTTTA
1 CCCTCAAACTTCCAAAAATTACATTTTGA
**
33198564 CCCTTGAACTTCCAAAAATTACATTTTTGA
1 CCCTCAAACTTCCAAAAATTACA-TTTTGA
* * **
33198594 CTCC-GAAACTTCCAAAAATTCCACATTGA
1 C-CCTCAAACTTCCAAAAATTACATTTTGA
* *
33198623 CCC-CAAACTTCTCTAAAATTACATTTTTA
1 CCCTCAAACTTC-CAAAAATTACATTTTGA
* * * *
33198652 ACCTTAAATCTTCCAAAAGTTCCATTTTGA
1 CCCTCAAA-CTTCCAAAAATTACATTTTGA
*
33198682 CCC-CAAAACTTTCAAAAATTACATTTTTGA
1 CCCTC-AAACTTCCAAAAATTACA-TTTTGA
*
33198712 CCCTAAAACTTCCAAAAATTACATTTTG-
1 CCCTCAAACTTCCAAAAATTACATTTTGA
*
33198740 CCC-CAAAACTTCCAAAAATTACATTTTTA
1 CCCTC-AAACTTCCAAAAATTACATTTTGA
* *
33198769 CCCCCAAACTTCCAAAAATTCCATTTTGA
1 CCCTCAAACTTCCAAAAATTACATTTTGA
* *
33198798 CCCTGAAACTTCCTAAAATTACATTTTTG-
1 CCCTCAAACTTCCAAAAATTACA-TTTTGA
*
33198827 CCC-CAAACTTCCAAAAATTCCATTTTTGA
1 CCCTCAAACTTCCAAAAATTACA-TTTTGA
*
33198856 CCC-AAACACTTCC-AAAATTAC
1 CCCTCAA-ACTTCCAAAAATTAC
33198877 CATTGTACCC
Statistics
Matches: 305, Mismatches: 51, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
28 56 0.18
29 132 0.43
30 111 0.36
31 6 0.02
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.33
Consensus pattern (29 bp):
CCCTCAAACTTCCAAAAATTACATTTTGA
Found at i:33198556 original size:59 final size:58
Alignment explanation
Indices: 33198476--33198876 Score: 404
Period size: 59 Copynumber: 6.9 Consensus size: 58
33198466 CCCTAAAGGT
* *
33198476 CCCT-AAACTATCCAAAAATTATATTTTGACCCTCAAACTTCTCCAAAATTACA-TTTTGA
1 CCCTAAAACT-TCCAAAAATTACATTTTGACCC-CAAACTTC-CAAAAATTACATTTTTGA
** * * **
33198535 CCCTAAAACTTTTAAAAATTATATTTTTACCCTTGAACTTCCAAAAATTACATTTTTGA
1 CCCTAAAACTTCCAAAAATTACATTTTGACCC-CAAACTTCCAAAAATTACATTTTTGA
* * ** * *
33198594 CTCC-GAAACTTCCAAAAATTCCACATTGACCCCAAACTTCTCTAAAATTACATTTTTAA
1 C-CCTAAAACTTCCAAAAATTACATTTTGACCCCAAACTTC-CAAAAATTACATTTTTGA
* * * * *
33198653 CCTTAAATCTTCCAAAAGTTCCATTTTGACCCCAAAACTTTCAAAAATTACATTTTTGA
1 CCCTAAAACTTCCAAAAATTACATTTTGACCCC-AAACTTCCAAAAATTACATTTTTGA
33198712 CCCTAAAACTTCCAAAAATTACATTTTG-CCCCAAAACTTCCAAAAATTACATTTTT-A
1 CCCTAAAACTTCCAAAAATTACATTTTGACCCC-AAACTTCCAAAAATTACATTTTTGA
** * * *
33198769 CCCCCAAACTTCCAAAAATTCCATTTTGACCCTGAAACTTCCTAAAATTACATTTTTG-
1 CCCTAAAACTTCCAAAAATTACATTTTGACCC-CAAACTTCCAAAAATTACATTTTTGA
* * *
33198827 CCC-CAAACTTCCAAAAATTCCATTTTTGACCCAAACACTTCC-AAAATTAC
1 CCCTAAAACTTCCAAAAATTACA-TTTTGACCCCAA-ACTTCCAAAAATTAC
33198877 CATTGTACCC
Statistics
Matches: 293, Mismatches: 38, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
57 55 0.19
58 87 0.30
59 138 0.47
60 13 0.04
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.33
Consensus pattern (58 bp):
CCCTAAAACTTCCAAAAATTACATTTTGACCCCAAACTTCCAAAAATTACATTTTTGA
Found at i:33198898 original size:58 final size:56
Alignment explanation
Indices: 33198480--33198945 Score: 360
Period size: 59 Copynumber: 8.0 Consensus size: 56
33198470 AAAGGTCCCT
** * * **
33198480 AAACTATCCAAAAATTATATTTTGACCCTCAAACTTCTCCAAAATTACATTTTGACCCTA
1 AAACT-TCCAAAAATTCCATTTTGACCC-AAAACTTC-CAAAAATTACATTTT-ACCCCC
** ** * ** * *
33198540 AAACTTTTAAAAATTATATTTTTACCCTTGAACTTCCAAAAATTACATTTTTGACTCCG
1 AAACTTCCAAAAATTCCATTTTGACCC-AAAACTTCCAAAAATTACA-TTTT-ACCCCC
** * * * **
33198599 AAACTTCCAAAAATTCCACATTGACCCCAAACTTCTCTAAAATTACATTTTTAACCTT
1 AAACTTCCAAAAATTCCATTTTGACCCAAAACTTC-CAAAAATTACA-TTTTACCCCC
* * **
33198657 AAATCTTCCAAAAGTTCCATTTTGACCCCAAAACTTTCAAAAATTACATTTTTGACCCTA
1 AAA-CTTCCAAAAATTCCATTTTGA-CCCAAAACTTCCAAAAATTACA-TTTT-ACCCCC
* *
33198717 AAACTTCCAAAAATTACATTTTGCCCCAAAACTTCCAAAAATTACATTTTTACCCCC
1 AAACTTCCAAAAATTCCATTTTGACCCAAAACTTCCAAAAATTACA-TTTTACCCCC
* * **
33198774 AAACTTCCAAAAATTCCATTTTGACCCTGAAACTTCCTAAAATTACATTTTTGCCCC
1 AAACTTCCAAAAATTCCATTTTGACCC-AAAACTTCCAAAAATTACATTTTACCCCC
*
33198831 AAACTTCCAAAAATTCCATTTTTGACCCAAACACTTCC-AAAATTACCATTGTACCCCC
1 AAACTTCCAAAAATTCCA-TTTTGACCCAAA-ACTTCCAAAAATTA-CATTTTACCCCC
* ** * ***
33198889 GAA-TGTCCAAAAATGTCGTTTTTGACCCCGATTTTTCCAAAAATTATCATTTTACCC
1 AAACT-TCCAAAAAT-TCCATTTTGA-CCCAAAACTTCCAAAAATTA-CATTTTACCC
33198946 TCGAATGTCT
Statistics
Matches: 337, Mismatches: 56, Indels: 27
0.80 0.13 0.06
Matches are distributed among these distances:
57 65 0.19
58 109 0.32
59 142 0.42
60 21 0.06
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (56 bp):
AAACTTCCAAAAATTCCATTTTGACCCAAAACTTCCAAAAATTACATTTTACCCCC
Found at i:33198960 original size:58 final size:60
Alignment explanation
Indices: 33198865--33198993 Score: 158
Period size: 59 Copynumber: 2.2 Consensus size: 60
33198855 ACCCAAACAC
* * **
33198865 TTCC-AAAATTACCATTGTACCCCCGAATGTCCAAAAATGTCGTTTTTGACCC-CGATTT
1 TTCCAAAAATTACCATTGTACCCCCGAATGTCCAAAAATGTCATTTTTAACCCTAAATTT
* * * *
33198923 TTCCAAAAATTATCATTTTACCCTCGAATGT-CTAAAATGTCATTTTTAACCCTAAATTT
1 TTCCAAAAATTACCATTGTACCCCCGAATGTCCAAAAATGTCATTTTTAACCCTAAATTT
33198982 TTCC-AAAATTAC
1 TTCCAAAAATTAC
33198994 TATTTTGTCC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
58 29 0.48
59 31 0.52
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (60 bp):
TTCCAAAAATTACCATTGTACCCCCGAATGTCCAAAAATGTCATTTTTAACCCTAAATTT
Found at i:33198999 original size:58 final size:58
Alignment explanation
Indices: 33198836--33198999 Score: 163
Period size: 58 Copynumber: 2.8 Consensus size: 58
33198826 GCCCCAAACT
* *** * *
33198836 TCCAAAAAT-TCCATTTTTGACCCAAACACTTCCAAAATTACCATTGTACCCCCGAATG
1 TCCAAAAATGT-CATTTTTAACCCAAATTTTTCCAAAATTACTATTTTACCCCCGAATG
* * ** *
33198894 TCCAAAAATGTCGTTTTTGACCCCGATTTTTCCAAAAATTA-TCATTTTACCCTCGAATG
1 TCCAAAAATGTCATTTTTAACCCAAATTTTTCC-AAAATTACT-ATTTTACCCCCGAATG
*
33198953 T-CTAAAATGTCATTTTTAACCCTAAATTTTTCCAAAATTACTATTTT
1 TCCAAAAATGTCATTTTTAACCC-AAATTTTTCCAAAATTACTATTTT
33199000 GTCCCAAATA
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
58 55 0.63
59 32 0.37
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (58 bp):
TCCAAAAATGTCATTTTTAACCCAAATTTTTCCAAAATTACTATTTTACCCCCGAATG
Found at i:33199015 original size:28 final size:28
Alignment explanation
Indices: 33198983--33199060 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
33198973 CCTAAATTTT
* * *
33198983 TCCAAAATTACTATTTTGTCCCAAATAG
1 TCCAAAATTACCATTTTGCCCCAAAGAG
**
33199011 TCCAAAATTACCATTTTGCCCCCGAGAG
1 TCCAAAATTACCATTTTGCCCCAAAGAG
* *
33199039 TCTAAAATTACCATTTTACCCC
1 TCCAAAATTACCATTTTGCCCC
33199061 CGATATCCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
TCCAAAATTACCATTTTGCCCCAAAGAG
Found at i:33199061 original size:28 final size:28
Alignment explanation
Indices: 33199009--33199072 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
33198999 TGTCCCAAAT
*
33199009 AGTCCAAAATTACCATTTTGCCCCCGAG
1 AGTCCAAAATTACCATTTTACCCCCGAG
* *
33199037 AGTCTAAAATTACCATTTTACCCCCGAT
1 AGTCCAAAATTACCATTTTACCCCCGAG
33199065 A-TCCAAAA
1 AGTCCAAAA
33199073 GTCTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 6 0.19
28 26 0.81
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.27
Consensus pattern (28 bp):
AGTCCAAAATTACCATTTTACCCCCGAG
Found at i:33207199 original size:25 final size:25
Alignment explanation
Indices: 33207171--33207245 Score: 61
Period size: 25 Copynumber: 3.1 Consensus size: 25
33207161 TATGGTTTTA
33207171 AATTCAGGTTAGATTTCATCTATTC
1 AATTCAGGTTAGATTTCATCTATTC
* * * *
33207196 AATT-A-G-T--ATTATTATGGTTTTA
1 AATTCAGGTTAGATT-TCAT-CTATTC
33207218 AATTCAGGTTAGATTTCATCTATTC
1 AATTCAGGTTAGATTTCATCTATTC
33207243 AAT
1 AAT
33207246 CAGTATTATT
Statistics
Matches: 35, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
20 3 0.09
21 3 0.09
22 8 0.23
23 2 0.06
24 2 0.06
25 11 0.31
26 3 0.09
27 3 0.09
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.47
Consensus pattern (25 bp):
AATTCAGGTTAGATTTCATCTATTC
Found at i:33207202 original size:47 final size:47
Alignment explanation
Indices: 33207148--33207256 Score: 209
Period size: 47 Copynumber: 2.3 Consensus size: 47
33207138 ACGTTGTTTA
33207148 CAATTAGTATTATTATGGTTTTAAATTCAGGTTAGATTTCATCTATT
1 CAATTAGTATTATTATGGTTTTAAATTCAGGTTAGATTTCATCTATT
33207195 CAATTAGTATTATTATGGTTTTAAATTCAGGTTAGATTTCATCTATT
1 CAATTAGTATTATTATGGTTTTAAATTCAGGTTAGATTTCATCTATT
*
33207242 CAATCAGTATTATTA
1 CAATTAGTATTATTA
33207257 GGGTGGATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (47 bp):
CAATTAGTATTATTATGGTTTTAAATTCAGGTTAGATTTCATCTATT
Found at i:33260213 original size:18 final size:18
Alignment explanation
Indices: 33260190--33260228 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
33260180 CAATTTTATA
* *
33260190 AATATAACTATGTTCATC
1 AATATAAATATGTTAATC
33260208 AATATAAATATGTTAATC
1 AATATAAATATGTTAATC
33260226 AAT
1 AAT
33260229 TTTATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (18 bp):
AATATAAATATGTTAATC
Found at i:33260496 original size:6 final size:6
Alignment explanation
Indices: 33260485--33260511 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
33260475 TGAGTGAGGG
33260485 GGAAGT GGAAGT GGAAGT GGAAGT GGA
1 GGAAGT GGAAGT GGAAGT GGAAGT GGA
33260512 GGACCGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15
Consensus pattern (6 bp):
GGAAGT
Found at i:33285182 original size:3 final size:3
Alignment explanation
Indices: 33285174--33285202 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
33285164 TTAGGGTTGG
33285174 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
33285203 AGTGATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:33290112 original size:22 final size:22
Alignment explanation
Indices: 33290078--33290125 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
33290068 AATTCTTGTT
33290078 AAAAAAATAAAA-TATAAGTGGC
1 AAAAAAATAAAATTATAAG-GGC
* *
33290100 AAAATAATGAAATTTATAAGGGC
1 AAAAAAAT-AAAATTATAAGGGC
33290123 AAA
1 AAA
33290126 GGTCAAACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 7 0.32
23 9 0.41
24 6 0.27
ACGTcount: A:0.60, C:0.04, G:0.15, T:0.21
Consensus pattern (22 bp):
AAAAAAATAAAATTATAAGGGC
Found at i:33293906 original size:21 final size:21
Alignment explanation
Indices: 33293862--33293907 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
33293852 AGAAACTTAG
* *
33293862 CCAATTTACTTGTGTTATTCA
1 CCAATTTACTTGTCTTATCCA
33293883 CCAATTTACTTGTCTTA-CCAA
1 CCAATTTACTTGTCTTATCC-A
33293904 CCAA
1 CCAA
33293908 AACCTTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (21 bp):
CCAATTTACTTGTCTTATCCA
Found at i:33309464 original size:20 final size:19
Alignment explanation
Indices: 33309439--33309486 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
33309429 AATGTAATTA
33309439 TAAAAATAAATAAAAATGGT
1 TAAAAATAAA-AAAAATGGT
*
33309459 TAAAAATTAGAAAAAATGGT
1 TAAAAA-TAAAAAAAATGGT
*
33309479 TTAAAATA
1 TAAAAATA
33309487 TCAAAATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27
Consensus pattern (19 bp):
TAAAAATAAAAAAAATGGT
Found at i:33311386 original size:59 final size:61
Alignment explanation
Indices: 33311314--33311442 Score: 174
Period size: 59 Copynumber: 2.1 Consensus size: 61
33311304 TTAATATAAC
* *
33311314 ATTTGGTACCTGAACTTGACA-CTTTTTCCTAATTTTGTACATAAAC-TTTTTT-GGACTCA
1 ATTTGGTACCTGAACTTGA-ATCTTTTTCCTAATTTGGTACATAAACTTTTTTTAAGACTCA
* * * *
33311373 ATTTGGTACCTGAACTTGAATTTTTTTCCTAATTTGGTACCTAAGCTTTTTTTAAGATTCA
1 ATTTGGTACCTGAACTTGAATCTTTTTCCTAATTTGGTACATAAACTTTTTTTAAGACTCA
33311434 ATTTGGTAC
1 ATTTGGTAC
33311443 ATAAATTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
58 1 0.02
59 40 0.66
60 6 0.10
61 14 0.23
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.46
Consensus pattern (61 bp):
ATTTGGTACCTGAACTTGAATCTTTTTCCTAATTTGGTACATAAACTTTTTTTAAGACTCA
Found at i:33312077 original size:19 final size:20
Alignment explanation
Indices: 33312036--33312080 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
33312026 TTATATTTTG
* **
33312036 AAAAAAATATTAATTTCTGT
1 AAAAAAATATTAATTACAAT
33312056 AAAAAAATATTAA-TACAAT
1 AAAAAAATATTAATTACAAT
33312075 AAAAAA
1 AAAAAA
33312081 TTAATAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAAATATTAATTACAAT
Found at i:33313429 original size:19 final size:20
Alignment explanation
Indices: 33313405--33313449 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
33313395 TTCCTGTGTG
33313405 CTTTATT-TTATTGGTT-GCT
1 CTTTATTGTTA-TGGTTGGCT
33313424 CTTTATTGTTATGGTTGGCT
1 CTTTATTGTTATGGTTGGCT
33313444 -TTTATT
1 CTTTATT
33313450 ACTAGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.11, C:0.09, G:0.18, T:0.62
Consensus pattern (20 bp):
CTTTATTGTTATGGTTGGCT
Found at i:33318628 original size:19 final size:18
Alignment explanation
Indices: 33318604--33318653 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
33318594 TATATTTGTT
33318604 TTTATAT-TATTCTTGAATA
1 TTTATATATATT-TTGAA-A
33318623 TTTATATATATTTTGAAA
1 TTTATATATATTTTGAAA
*
33318641 TTT-TATGTATTTT
1 TTTATATATATTTT
33318654 TTATTTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.31
18 4 0.14
19 12 0.41
20 4 0.14
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (18 bp):
TTTATATATATTTTGAAA
Found at i:33319141 original size:28 final size:28
Alignment explanation
Indices: 33319108--33319165 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
33319098 TTTTAAAATT
*
33319108 GACTTTAATATGAG-AAATCGATCTGATC
1 GACTTTAAT-TGAGAAAATCGATCTAATC
* *
33319136 GACTTTAGTTGAGAAAATTGATCTAATC
1 GACTTTAATTGAGAAAATCGATCTAATC
33319164 GA
1 GA
33319166 TTAACTTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (28 bp):
GACTTTAATTGAGAAAATCGATCTAATC
Found at i:33319567 original size:14 final size:14
Alignment explanation
Indices: 33319538--33319571 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33319528 GAATAAAACT
*
33319538 TACACA-AATCTTA
1 TACACATAATCTCA
33319551 TACACATAATCTCA
1 TACACATAATCTCA
33319565 TACACAT
1 TACACAT
33319572 GATGAAAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.29
Consensus pattern (14 bp):
TACACATAATCTCA
Found at i:33323477 original size:17 final size:18
Alignment explanation
Indices: 33323455--33323492 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
33323445 TACTTTATAT
33323455 TTAAAATAATA-ATAAAG
1 TTAAAATAATACATAAAG
*
33323472 TTAAAATACTACATAAAG
1 TTAAAATAATACATAAAG
33323490 TTA
1 TTA
33323493 TTTTTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (18 bp):
TTAAAATAATACATAAAG
Found at i:33335237 original size:24 final size:24
Alignment explanation
Indices: 33335210--33335258 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
33335200 GAATTAAAAC
**
33335210 TTAATTA-ATAAATTATTTTAATTT
1 TTAATTAGA-AAATTACCTTAATTT
33335234 TTAATTAGAAAATTACCTTAATTT
1 TTAATTAGAAAATTACCTTAATTT
33335258 T
1 T
33335259 AACTTAGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (24 bp):
TTAATTAGAAAATTACCTTAATTT
Found at i:33345374 original size:14 final size:15
Alignment explanation
Indices: 33345342--33345374 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33345332 TATAATATTA
33345342 TTAATTATTATAGAT
1 TTAATTATTATAGAT
*
33345357 TTAATTTTTATA-AT
1 TTAATTATTATAGAT
33345371 TTAA
1 TTAA
33345375 AAATTACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAATTATTATAGAT
Found at i:33345395 original size:18 final size:18
Alignment explanation
Indices: 33345372--33345407 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33345362 TTTTATAATT
* *
33345372 TAAAAATTACTTAATATA
1 TAAAAATAACATAATATA
33345390 TAAAAATAACATAATATA
1 TAAAAATAACATAATATA
33345408 ATATAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATAACATAATATA
Found at i:33350476 original size:14 final size:14
Alignment explanation
Indices: 33350457--33350483 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33350447 TATATATATA
33350457 TGTATGTGTGTGTG
1 TGTATGTGTGTGTG
33350471 TGTATGTGTGTGT
1 TGTATGTGTGTGT
33350484 ATGTGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.41, T:0.52
Consensus pattern (14 bp):
TGTATGTGTGTGTG
Found at i:33350480 original size:10 final size:10
Alignment explanation
Indices: 33350465--33350490 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
33350455 TATGTATGTG
33350465 TGTGTGTGTA
1 TGTGTGTGTA
33350475 TGTGTGTGTA
1 TGTGTGTGTA
33350485 TGTGTG
1 TGTGTG
33350491 AGAGTGTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (10 bp):
TGTGTGTGTA
Found at i:33356552 original size:22 final size:20
Alignment explanation
Indices: 33356500--33356555 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
33356490 CTTTTATCTA
*
33356500 TTTTTATATTTTTATTTACT
1 TTTTTATAATTTTATTTACT
* *
33356520 TTTATTTTAATTTTAGTTTTAGT
1 TTT-TTATAATTTTA--TTTACT
33356543 TTTTTATAATTTT
1 TTTTTATAATTTT
33356556 CTAAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 9 0.31
22 9 0.31
23 8 0.28
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTTATAATTTTATTTACT
Found at i:33357827 original size:16 final size:16
Alignment explanation
Indices: 33357808--33357838 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
33357798 TCTGTTTTGA
33357808 TCTTTCTTTCTTTTTT
1 TCTTTCTTTCTTTTTT
33357824 TCTTTCTTTCTTTTT
1 TCTTTCTTTCTTTTT
33357839 AGTTTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TCTTTCTTTCTTTTTT
Found at i:33361511 original size:12 final size:12
Alignment explanation
Indices: 33361496--33361520 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33361486 CTACAAATCG
33361496 TGGGGTAAATGC
1 TGGGGTAAATGC
33361508 TGGGGTAAATGC
1 TGGGGTAAATGC
33361520 T
1 T
33361521 CCAGACCAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.40, T:0.28
Consensus pattern (12 bp):
TGGGGTAAATGC
Found at i:33363129 original size:1 final size:1
Alignment explanation
Indices: 33363097--33363121 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
33363087 GTTTTGAGGA
33363097 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
33363122 TAAGGGGGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:33368523 original size:6 final size:6
Alignment explanation
Indices: 33368512--33368543 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
33368502 TATCCTATGT
33368512 ATTACC ATTACC ATTACC ATTACC ATTACC AT
1 ATTACC ATTACC ATTACC ATTACC ATTACC AT
33368544 GGTTGTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTACC
Found at i:33372554 original size:10 final size:10
Alignment explanation
Indices: 33372515--33372579 Score: 58
Period size: 10 Copynumber: 6.1 Consensus size: 10
33372505 GAGGAATGCG
*
33372515 TAAAAAAAACA
1 TAAATAAAA-A
*
33372526 TAAATATAAA
1 TAAATAAAAA
33372536 TAGACATAAAAA
1 TA-A-ATAAAAA
*
33372548 TAAATAAAGA
1 TAAATAAAAA
*
33372558 TAAAATAAGAA
1 T-AAATAAAAA
33372569 TAAATAAAAA
1 TAAATAAAAA
33372579 T
1 T
33372580 TATACAAATG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
10 19 0.43
11 17 0.39
12 8 0.18
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:33372560 original size:16 final size:16
Alignment explanation
Indices: 33372521--33372562 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
33372511 TGCGTAAAAA
*
33372521 AAACATAAATATAAAT
1 AAACATAAAAATAAAT
*
33372537 AGACATAAAAATAAAT
1 AAACATAAAAATAAAT
*
33372553 AAAGATAAAA
1 AAACATAAAA
33372563 TAAGAATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (16 bp):
AAACATAAAAATAAAT
Found at i:33379496 original size:2 final size:2
Alignment explanation
Indices: 33379489--33379520 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
33379479 AAATAAATAA
33379489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33379521 GATTTTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33379765 original size:28 final size:28
Alignment explanation
Indices: 33379725--33379784 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
33379715 TACTTGACCC
*
33379725 AATT-TTTTATTCT-TATTATTTTTAAA
1 AATTATTTTATTCTCAATTATTTTTAAA
33379751 ATATTATTTTATTCTCAATTATTTTTAAA
1 A-ATTATTTTATTCTCAATTATTTTTAAA
33379780 AATTA
1 AATTA
33379785 CTAAACTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 1 0.03
27 3 0.10
28 13 0.43
29 13 0.43
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (28 bp):
AATTATTTTATTCTCAATTATTTTTAAA
Found at i:33390750 original size:29 final size:29
Alignment explanation
Indices: 33390717--33390772 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
33390707 AAAATGGAAT
*
33390717 CAAAATAAAATTTTATATATAAAATTACA
1 CAAAATAAAAGTTTATATATAAAATTACA
* * *
33390746 CAAAATCAAAGTTTATGTATAATATTA
1 CAAAATAAAAGTTTATATATAAAATTA
33390773 TACATTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.36
Consensus pattern (29 bp):
CAAAATAAAAGTTTATATATAAAATTACA
Found at i:33395813 original size:42 final size:42
Alignment explanation
Indices: 33395766--33395851 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
33395756 CGAAAAAGAA
*
33395766 TAGTTTATGAGTGTTATTT-AGGAATAAAATTATATTTGGATT
1 TAGTTTATGAGTGTT-TTTGAAGAATAAAATTATATTTGGATT
*
33395808 TAGTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGGTT
1 TAGTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGATT
33395850 TA
1 TA
33395852 AAAATATTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 3 0.07
42 38 0.93
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (42 bp):
TAGTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGGATT
Found at i:33410355 original size:1 final size:1
Alignment explanation
Indices: 33410311--33410336 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
33410301 GGGTACGTTC
33410311 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
33410337 GAAAGAGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:33421666 original size:3 final size:3
Alignment explanation
Indices: 33421660--33421688 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
33421650 TTCTCCACCT
33421660 CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
33421689 TCATCCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
CTG
Found at i:33424424 original size:2 final size:2
Alignment explanation
Indices: 33424417--33424446 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
33424407 ACACTCTCAA
*
33424417 AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
33424447 CCGTAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Done.