Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 14 of 144
Found at i:3504443 original size:24 final size:24
Alignment explanation
Indices: 3504425--3504475 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
3504415 AGTTTGACTT
3504425 AAACAAATAAACAAAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
* *
3504449 AAACAAATAAACAGAGTTTAACTG
1 AAACAAATAAACAAAGTTTAATTG
3504473 AAA
1 AAA
3504476 GATTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAATTG
Found at i:3510362 original size:224 final size:224
Alignment explanation
Indices: 3509972--3510422 Score: 893
Period size: 224 Copynumber: 2.0 Consensus size: 224
3509962 ATCTCCAATT
3509972 AAATCGTGTGTACTATAGACATGACCTCTTCACCATATTTGGTTGCTTCATCTTTGAATAAAAAT
1 AAATCGTGTGTACTATAGACATGACCTCTTCACCATATTTGGTTGCTTCATCTTTGAATAAAAAT
3510037 CCCTTCTCCAGCCATAGTCCTGGTTTGATGAAATTTTGTTAAACCTATCTTCAGTAGTTTTGCTG
66 CCCTTCTCCAGCCATAGTCCTGGTTTGATGAAATTTTGTTAAACCTATCTTCAGTAGTTTTGCTG
3510102 AAGAAAGTTCGGGTTAGCAAGGATAGGTTGCTTGGCATTTTTCTTGACATGGTTTAGAGGTTTCA
131 AAGAAAGTTCGGGTTAGCAAGGATAGGTTGCTTGGCATTTTTCTTGACATGGTTTAGAGGTTTCA
3510167 AAAAATAAAAATGGAGTCTTTTTCGTATG
196 AAAAATAAAAATGGAGTCTTTTTCGTATG
3510196 AAATCGTGTGTACTATAGACATGACCTCTTCACCATATTTGGTTGCTTCATCTTTGAATAAAAAT
1 AAATCGTGTGTACTATAGACATGACCTCTTCACCATATTTGGTTGCTTCATCTTTGAATAAAAAT
3510261 CCCTTCTCCAGCCATAGTCCTGGTTTGATGAAATTTTGTTAAACCTATCTTCAGTAGTTTTGCTG
66 CCCTTCTCCAGCCATAGTCCTGGTTTGATGAAATTTTGTTAAACCTATCTTCAGTAGTTTTGCTG
*
3510326 AAGAAAGTTCGGGTTAGCAAGGATAGGTTGCTTGGCATTTTTCTTGACATGGTTTAGAGGTTTCG
131 AAGAAAGTTCGGGTTAGCAAGGATAGGTTGCTTGGCATTTTTCTTGACATGGTTTAGAGGTTTCA
3510391 AAAAATAAAAATGGAGTCTTTTTCGTATG
196 AAAAATAAAAATGGAGTCTTTTTCGTATG
3510420 AAA
1 AAA
3510423 ATTAAGTGAA
Statistics
Matches: 226, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
224 226 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (224 bp):
AAATCGTGTGTACTATAGACATGACCTCTTCACCATATTTGGTTGCTTCATCTTTGAATAAAAAT
CCCTTCTCCAGCCATAGTCCTGGTTTGATGAAATTTTGTTAAACCTATCTTCAGTAGTTTTGCTG
AAGAAAGTTCGGGTTAGCAAGGATAGGTTGCTTGGCATTTTTCTTGACATGGTTTAGAGGTTTCA
AAAAATAAAAATGGAGTCTTTTTCGTATG
Found at i:3510765 original size:7 final size:7
Alignment explanation
Indices: 3510750--3510779 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
3510740 CAAATTGAAT
*
3510750 AAGAAAA
1 AAGACAA
3510757 AAGACAA
1 AAGACAA
3510764 AAGACAA
1 AAGACAA
3510771 AAGACAA
1 AAGACAA
3510778 AA
1 AA
3510780 ATAACCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.77, C:0.10, G:0.13, T:0.00
Consensus pattern (7 bp):
AAGACAA
Found at i:3517512 original size:16 final size:16
Alignment explanation
Indices: 3517470--3517518 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
3517460 TTATTTATTT
3517470 ATTAAATAAATAAACA
1 ATTAAATAAATAAACA
* *
3517486 AATAAATAAATAATAGA
1 ATTAAATAAATAA-ACA
*
3517503 ATTAAA-AAATATACA
1 ATTAAATAAATAAACA
3517518 A
1 A
3517519 ACCCAATTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 3 0.11
16 17 0.63
17 7 0.26
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (16 bp):
ATTAAATAAATAAACA
Found at i:3518753 original size:30 final size:30
Alignment explanation
Indices: 3518708--3518885 Score: 145
Period size: 30 Copynumber: 6.0 Consensus size: 30
3518698 TTGACCCCCC
*
3518708 CAAAGTTTT-CAAAAA-TCTAAATTTGACCCT
1 CAAA-TTTTCCAAAAATTC-AAATTTAACCCT
* * *
3518738 CGAATTTTCCAAAAATTCAAATTTCACCCC
1 CAAATTTTCCAAAAATTCAAATTTAACCCT
*
3518768 CAAATTTTCTAAAAATTCAAATTTAATCCCT
1 CAAATTTTCCAAAAATTCAAATTTAA-CCCT
* *
3518799 --AATGTTTTCAAAAATTCAAATTTGACCC-
1 CAAAT-TTTCCAAAAATTCAAATTTAACCCT
*
3518827 CTAAATTTTCC-AACATTCAAATTTAACCCTT
1 C-AAATTTTCCAAAAATTCAAATTTAACCC-T
* * * *
3518858 AAAATTTT-AAAAAATTAAAATTTGACCC
1 CAAATTTTCCAAAAATTCAAATTTAACCC
3518886 CGTTTTAATG
Statistics
Matches: 120, Mismatches: 18, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
29 26 0.22
30 86 0.72
31 8 0.07
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (30 bp):
CAAATTTTCCAAAAATTCAAATTTAACCCT
Found at i:3518879 original size:59 final size:60
Alignment explanation
Indices: 3518704--3518886 Score: 187
Period size: 60 Copynumber: 3.1 Consensus size: 60
3518694 TTTTTTGACC
* ** * *
3518704 CCCCCAAAGTTTTC-AAAAA-TCTAAATTTGA-CCCTCGAATTTTCCAAAAATTCAAATTTCA
1 CCCCCAAA-TTTTCTAAAAATTC-AAATTTAATCCCTAAAATTTT-AAAAAATTCAAATTTGA
** *
3518764 CCCCCAAATTTTCTAAAAATTCAAATTTAATCCCTAATGTTTTCAAAAATTCAAATTTGA
1 CCCCCAAATTTTCTAAAAATTCAAATTTAATCCCTAAAATTTTAAAAAATTCAAATTTGA
* * * *
3518824 CCCCTAAATTTTC-CAACATTCAAATTTAA-CCCTTAAAATTTTAAAAAATTAAAATTTGA
1 CCCCCAAATTTTCTAAAAATTCAAATTTAATCCC-TAAAATTTTAAAAAATTCAAATTTGA
3518883 CCCC
1 CCCC
3518887 GTTTTAATGT
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
58 3 0.03
59 45 0.42
60 48 0.45
61 10 0.09
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.34
Consensus pattern (60 bp):
CCCCCAAATTTTCTAAAAATTCAAATTTAATCCCTAAAATTTTAAAAAATTCAAATTTGA
Found at i:3527881 original size:50 final size:50
Alignment explanation
Indices: 3527754--3527887 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 50
3527744 ATCTTTTACC
* * * * *
3527754 CCTAAAGCTATGGAGGTGCAGATTGAAACCGCAACAGCAAATCTCATACA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAGCCACAACAGCAAATCTCATACA
* * * * * ** *
3527804 CCTGAAGATGTAGAGGAGCAAAATGAAGCTACAATGGCAAATCTCATTCA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAGCCACAACAGCAAATCTCATACA
* *
3527854 CCTAAAGCTGTAGAGGGGCAGATTGAAGTCACAA
1 CCTAAAGCTGTAGAGGAGCAGATTGAAGCCACAA
3527888 GGACGAATCT
Statistics
Matches: 64, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (50 bp):
CCTAAAGCTGTAGAGGAGCAGATTGAAGCCACAACAGCAAATCTCATACA
Found at i:3527984 original size:40 final size:39
Alignment explanation
Indices: 3527935--3528228 Score: 279
Period size: 40 Copynumber: 7.4 Consensus size: 39
3527925 AGTTACAACC
3527935 TCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACAA
1 TCCAATCTTTTACCCTAA-TAGAGGGCAGATTGAAGACAA
** * * *
3527975 TCCAATCTTTTACCCCGATCATG-GGGTAGATTGAAAACTA
1 TCCAATCTTTTACCCTAAT-A-GAGGGCAGATTGAAGACAA
* *
3528015 TCTAATCTTTAACCCTAACTAGAGGGCAGATTGAAGA-AA
1 TCCAATCTTTTACCCTAA-TAGAGGGCAGATTGAAGACAA
* * * *
3528054 TCCAATCTTTTACCCTAACCAGAGAGCACATTGAAGACCA
1 TCCAATCTTTTACCCTAA-TAGAGGGCAGATTGAAGACAA
** * ** * * *
3528094 TCTGATCTCTTACCCCGATCATG-GGGCAAATTGAAAACTA
1 TCCAATCTTTTACCCTAAT-A-GAGGGCAGATTGAAGACAA
* *
3528134 TCCAATCTATTACCCTAATTAGAGGGCAGATTGAAGACCA
1 TCCAATCTTTTACCCTAA-TAGAGGGCAGATTGAAGACAA
* *
3528174 TCCAGTCTTTTACCCTAATCAGAGGGCAGATTGAAGGCAA
1 TCCAATCTTTTACCCTAAT-AGAGGGCAGATTGAAGACAA
3528214 TCCAATCTTTTACCC
1 TCCAATCTTTTACCC
3528229 CTAAAGTTAT
Statistics
Matches: 203, Mismatches: 41, Indels: 20
0.77 0.16 0.08
Matches are distributed among these distances:
39 37 0.18
40 162 0.80
41 4 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
TCCAATCTTTTACCCTAATAGAGGGCAGATTGAAGACAA
Found at i:3528149 original size:119 final size:120
Alignment explanation
Indices: 3527935--3528229 Score: 423
Period size: 119 Copynumber: 2.5 Consensus size: 120
3527925 AGTTACAACC
* *
3527935 TCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACAATCCAATCTTTTACCCCGATCATGGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACAATCCAATCTCTTACCCCGATCATGGG
* * *
3528000 GTAGATTGAAAACTATCTAATCTTTAACCCTAACTAGAGGGCAGATTGAAGA-AA
66 GCAAATTGAAAACTATCCAATCTTTAACCCTAACTAGAGGGCAGATTGAAGACAA
* * * **
3528054 TCCAATCTTTTACCCTAACCAGAGAGCACATTGAAGACCATCTGATCTCTTACCCCGATCATGGG
1 TCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACAATCCAATCTCTTACCCCGATCATGGG
* *
3528119 GCAAATTGAAAACTATCCAATCTATT-ACCCTAATTAGAGGGCAGATTGAAGACCA
66 GCAAATTGAAAACTATCCAATCT-TTAACCCTAACTAGAGGGCAGATTGAAGACAA
* * * *
3528174 TCCAGTCTTTTACCCTAATCAGAGGGCAGATTGAAGGCAATCCAATCTTTTACCCC
1 TCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACAATCCAATCTCTTACCCC
3528230 TAAAGTTATA
Statistics
Matches: 153, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
119 103 0.67
120 50 0.33
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (120 bp):
TCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACAATCCAATCTCTTACCCCGATCATGGG
GCAAATTGAAAACTATCCAATCTTTAACCCTAACTAGAGGGCAGATTGAAGACAA
Found at i:3529372 original size:2 final size:2
Alignment explanation
Indices: 3529365--3529393 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3529355 CATGTATTCC
3529365 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3529394 CTTCTACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3530198 original size:30 final size:30
Alignment explanation
Indices: 3530009--3530198 Score: 179
Period size: 30 Copynumber: 6.3 Consensus size: 30
3529999 AAAATCATTT
* *
3530009 TTTGACCCCCCAAAGTTTTCAAAAA-TCTAAA
1 TTTGA-CCCCTAAAATTTTCAAAAATTC-AAA
**
3530040 TTTGA-CCCTCGAATTTTCCAAAAATTCAAA
1 TTTGACCCCTAAAATTTT-CAAAAATTCAAA
* * *
3530070 TTTCACCCCCAAATTTTTCCAAAAATTCAAA
1 TTTGACCCCTAAAATTTT-CAAAAATTCAAA
* * ** *
3530101 TTTAATCCCTAATGTTTTTAAAAATTCAAA
1 TTTGACCCCTAAAATTTTCAAAAATTCAAA
* *
3530131 TTTGACCCCT-AAATTTTCCAAAATTTAAA
1 TTTGACCCCTAAAATTTTCAAAAATTCAAA
* *
3530160 TTTAACCCCTAAAATTTTCAAAAATTAAAA
1 TTTGACCCCTAAAATTTTCAAAAATTCAAA
3530190 TTTGACCCC
1 TTTGACCCC
3530199 GTTTTAATGT
Statistics
Matches: 129, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
29 31 0.24
30 57 0.44
31 41 0.32
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.35
Consensus pattern (30 bp):
TTTGACCCCTAAAATTTTCAAAAATTCAAA
Found at i:3555479 original size:98 final size:98
Alignment explanation
Indices: 3555310--3555548 Score: 469
Period size: 98 Copynumber: 2.4 Consensus size: 98
3555300 TAAATTTTTT
3555310 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTTGAGACCAACATTTGGAGATTGA
1 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTTGAGACCAACATTTGGAGATTGA
3555375 AAGAGTGAAATTACATGTAAACAAATCCATTCG
66 AAGAGTGAAATTACATGTAAACAAATCCATTCG
3555408 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTTGAGACCAACATTTGGAGATTGA
1 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTTGAGACCAACATTTGGAGATTGA
*
3555473 AAGAGTGAAATTGCATGTAAACAAATCCATTCG
66 AAGAGTGAAATTACATGTAAACAAATCCATTCG
3555506 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTT
1 TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTT
3555549 TGCTTAGTAT
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 140 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (98 bp):
TGAATACTCTAAATAATGTTTGGTAAGATAATCTAATTTTTTTGAGACCAACATTTGGAGATTGA
AAGAGTGAAATTACATGTAAACAAATCCATTCG
Found at i:3560839 original size:26 final size:25
Alignment explanation
Indices: 3560789--3560839 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 25
3560779 ATATTTAAGT
*
3560789 TTTTAAAATATTTTATGTATCATTAA
1 TTTTAAAATAATTTATGTA-CATTAA
3560815 TTTTACAAATAATTTATAGTA-ATTA
1 TTTTA-AAATAATTTAT-GTACATTA
3560840 CTTAGAAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 9 0.41
27 10 0.45
28 3 0.14
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTTAAAATAATTTATGTACATTAA
Found at i:3562310 original size:15 final size:15
Alignment explanation
Indices: 3562292--3562330 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
3562282 TTTAAGGTTA
3562292 TTTTTGTCTTTTGTC
1 TTTTTGTCTTTTGTC
* *
3562307 TTTTTCTCTTTTTTC
1 TTTTTGTCTTTTGTC
3562322 -TTTTGTCTT
1 TTTTTGTCTT
3562331 ATTCAATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.00, C:0.15, G:0.08, T:0.77
Consensus pattern (15 bp):
TTTTTGTCTTTTGTC
Found at i:3568406 original size:29 final size:29
Alignment explanation
Indices: 3568374--3568429 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
3568364 TCAAGTTGCC
3568374 CAGCATG-AAGAAAATGCGTTTTATGTCCA
1 CAGCATGCAA-AAAATGCGTTTTATGTCCA
*
3568403 CAGCATGCAAAAAATGCTTTTTATGTC
1 CAGCATGCAAAAAATGCGTTTTATGTC
3568430 AATAACATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (29 bp):
CAGCATGCAAAAAATGCGTTTTATGTCCA
Found at i:3568441 original size:28 final size:29
Alignment explanation
Indices: 3568384--3568441 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
3568374 CAGCATGAAG
* *
3568384 AAAATGCGTTTTATGTCCACAGCATGCAA
1 AAAATGCGTTTTATGTCAACAACATGCAA
* *
3568413 AAAATGCTTTTTATGTCAATAACAT-CAA
1 AAAATGCGTTTTATGTCAACAACATGCAA
3568441 A
1 A
3568442 GGAAATTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (29 bp):
AAAATGCGTTTTATGTCAACAACATGCAA
Found at i:3574657 original size:11 final size:12
Alignment explanation
Indices: 3574624--3574682 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 12
3574614 ATATTAGTTA
3574624 ATAATAATAA-T
1 ATAATAATAATT
*
3574635 ATAATACTAATT
1 ATAATAATAATT
3574647 A-AATAATAATTT
1 ATAATAATAA-TT
* *
3574659 ATATTATTATATT
1 ATAATAATA-ATT
*
3574672 ATAATATTAAT
1 ATAATAATAAT
3574683 AAATTAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 16 0.41
12 7 0.18
13 15 0.38
14 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (12 bp):
ATAATAATAATT
Found at i:3577146 original size:23 final size:23
Alignment explanation
Indices: 3577072--3577308 Score: 163
Period size: 23 Copynumber: 10.5 Consensus size: 23
3577062 TAAACGGAAC
* *
3577072 AAACAGAGAGTAC-CGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
3577094 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
3577116 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
3577142 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
3577162 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* **
3577181 AATCAGAGAGCACATGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
3577204 AATCGGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
3577227 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
* *
3577252 AAACAGAGAGCACGA-GACGTGCT
1 AAACAGAGAGCAC-ACAAAGTGCT
*
3577275 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
3577298 AATCAGAGAGC
1 AAACAGAGAGC
3577309 GCGCTAGTGT
Statistics
Matches: 173, Mismatches: 26, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
16 10 0.06
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.01
22 19 0.11
23 99 0.57
24 2 0.01
25 28 0.16
26 8 0.05
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:3577284 original size:71 final size:69
Alignment explanation
Indices: 3577176--3577308 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 69
3577166 AGCACACAAA
* * *
3577176 GTGCTAATCAGAGAGCACATGAAGTGCTAATCGGAGAGCACACACAGTGCTAATAACAGAGAGCA
1 GTGCTAAACAGAGAGCACATGAAGTGCTAAACAGAGAGCACACACAGTGCTAAT--CAGAGAGCA
3577241 CGAGAC
64 CGAGAC
*
3577247 GTGCTAAACAGAGAGCACGA-GACGTGCTAAACAGAGAGCACACACAGTGCTAATCAGAGAGC
1 GTGCTAAACAGAGAGCAC-ATGAAGTGCTAAACAGAGAGCACACACAGTGCTAATCAGAGAGC
3577309 GCGCTAGTGT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 8 0.14
71 48 0.84
72 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.27, T:0.13
Consensus pattern (69 bp):
GTGCTAAACAGAGAGCACATGAAGTGCTAAACAGAGAGCACACACAGTGCTAATCAGAGAGCACG
AGAC
Found at i:3578689 original size:429 final size:429
Alignment explanation
Indices: 3577890--3580015 Score: 4180
Period size: 429 Copynumber: 5.0 Consensus size: 429
3577880 AAGGATTAAA
3577890 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
1 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
3577955 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
66 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
*
3578020 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAAATTTAATTACATATATAATTCGA
131 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
*
3578085 CCCTTAACTCAATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
196 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
3578150 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
261 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
*
3578215 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGTAGAATAGGCTATAAA
326 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
3578280 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
391 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
3578319 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
1 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
3578384 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
66 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
3578449 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
131 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
3578514 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
196 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
3578579 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
261 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
3578644 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
326 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
3578709 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
391 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
3578748 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
1 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
3578813 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
66 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
*
3578878 TTTAATTCACTGTTTCTTCCATATGAAACTAAACCCAATAAGATTTAATTACATATATAATTCGA
131 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
*
3578943 CCCTTAACTCGATATACACAATTTTTAGTGTATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
196 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
3579008 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
261 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
3579073 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
326 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
3579138 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
391 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
3579177 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
1 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
3579242 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
66 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
3579307 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
131 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
3579372 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
196 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
* *
3579437 TGTTTCAATGAAAACATTTTCTTTCTTATGTTTTATTACGCTAATCTCACTTAATCATCTTTATA
261 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
3579502 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
326 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
3579567 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
391 CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
3579606 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
1 CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
*
3579671 GGGAACTCGTATCTGCTCTGACCTTGTTACATAAAATCAGTTATAACTCAGAATATACAGATCCA
66 GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
3579736 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
131 TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
3579801 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
196 CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
3579866 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
261 TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
3579931 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
326 ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
3579996 CTAAAATTCTTGTAGTACTT
391 CTAAAATTCTTGTAGTACTT
3580016 GCTCTATTCT
Statistics
Matches: 1685, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
429 1685 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (429 bp):
CCATATAAATTTCAGACTCTAATGATTGTTCTACATTTTTCTACAATTTTTCAAAGTCAGAACAG
GGGAACTCGTATCTGCTCTGACCTTGTTACACAAAATCAGTTATAACTCAGAATATACAGATCCA
TTTAATTCACTGTTTCTTCCATATGAAACTAAACTCAATAAGATTTAATTACATATATAATTCGA
CCCTTAACTCGATATACACAATTTTTAGTGCATTTTCAAAGTTAACCCTCTGATTCTGTCCAATC
TGTTTCAATGAAAACATTTTCTTTCTCATGTTTTATTACACTAATCTCACTTAATCATCTTTATA
ACACCTAATTAAACAACAATTTCCATGCTAACAACTCAAATATATTATGAAGAATAGGCTATAAA
CTAAAATTCTTGTAGTACTTACAACAAAAGGCTGAATTT
Found at i:3581511 original size:127 final size:126
Alignment explanation
Indices: 3581291--3581520 Score: 313
Period size: 127 Copynumber: 1.8 Consensus size: 126
3581281 TCTTTCATTT
* * *
3581291 TATGTTGTTGAGACAAAAGTTTAATATTTCCCTTCAACCGAGTTTCAATTGAGTTAAACATTTAT
1 TATGATGTTGAGACAAAAGTTTAATATTTCCCTTCAACCGAGTTTCAATTCAATTAAACATTTAT
* * **
3581356 TGAAAATTTTTTGTTTTATAAAATAAAAAATATTATTGTGGAGATATTTTTCTCATTTTAAA
66 CGAAAATTCTTTCATTTAT-AAATAAAAAATATTATTGTGGAGATATTTTTCTCATTTTAAA
* *
3581418 TATGATGTTGAGAGAAAAGTTTAATATTTCCCTTCAACAATCGAGTTTCAATTCAATTAAGCATT
1 TATGATGTTGAGACAAAAGTTTAATATTTCCCTTCAAC---CGAGTTTCAATTCAATTAAACATT
3581483 TATCGAAAA-TCTTTCATTTACT-AA-AAAAAATATTATTG
63 TATCGAAAATTCTTTCATTTA-TAAATAAAAAATATTATTG
3581521 CGGGTGTTGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
127 50 0.56
128 2 0.02
129 8 0.09
130 30 0.33
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.41
Consensus pattern (126 bp):
TATGATGTTGAGACAAAAGTTTAATATTTCCCTTCAACCGAGTTTCAATTCAATTAAACATTTAT
CGAAAATTCTTTCATTTATAAATAAAAAATATTATTGTGGAGATATTTTTCTCATTTTAAA
Found at i:3581981 original size:26 final size:26
Alignment explanation
Indices: 3581952--3582001 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
3581942 CTAGGTGTGG
3581952 GAATGCAGAGA-GAATTGA-GAATGAGA
1 GAATG-AGAGATG-ATTGATGAATGAGA
3581978 GAATGAGAGATGATTGATGAATGA
1 GAATGAGAGATGATTGATGAATGA
3582002 AGGGATGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.44, C:0.02, G:0.34, T:0.20
Consensus pattern (26 bp):
GAATGAGAGATGATTGATGAATGAGA
Found at i:3583014 original size:18 final size:19
Alignment explanation
Indices: 3582991--3583026 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3582981 ATTAGTTCTA
*
3582991 TCATTTT-TTTTGCAACAT
1 TCATTTTGTTTTGAAACAT
3583009 TCATTTTGTTTTGAAACA
1 TCATTTTGTTTTGAAACA
3583027 AAATAGAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (19 bp):
TCATTTTGTTTTGAAACAT
Found at i:3592195 original size:3 final size:3
Alignment explanation
Indices: 3592187--3592218 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
3592177 GAGTGGTGAA
3592187 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG
1 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG
3592219 TGGTAGTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:3592399 original size:30 final size:30
Alignment explanation
Indices: 3592365--3592438 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 30
3592355 GTATGATTTA
3592365 ATAAAACTAAAGATTATTACTGCATAACTC
1 ATAAAACTAAAGATTATTACTGCATAACTC
* *
3592395 -----A-TAAA-ATCATTACTGCATGACTC
1 ATAAAACTAAAGATTATTACTGCATAACTC
3592418 ATAAAACTAAAGATTATTACT
1 ATAAAACTAAAGATTATTACT
3592439 TCCATCACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
23 16 0.47
24 4 0.12
25 1 0.03
28 1 0.03
29 4 0.12
30 8 0.24
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (30 bp):
ATAAAACTAAAGATTATTACTGCATAACTC
Found at i:3602422 original size:23 final size:23
Alignment explanation
Indices: 3602370--3602425 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
3602360 TCCATCCTTG
* * * *
3602370 CTGACTAGACCTTCTGGAAGCTG
1 CTGACTGGATCTTCTAGAAGCTA
3602393 CTGACTGGATCTTCTAGAAGCTA
1 CTGACTGGATCTTCTAGAAGCTA
3602416 CTGACTGGAT
1 CTGACTGGAT
3602426 GCCACGTCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (23 bp):
CTGACTGGATCTTCTAGAAGCTA
Found at i:3604215 original size:5 final size:5
Alignment explanation
Indices: 3604205--3604242 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
3604195 ATTAATGACA
3604205 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA- AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
3604243 AACAATGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:3604225 original size:15 final size:14
Alignment explanation
Indices: 3604180--3604242 Score: 72
Period size: 14 Copynumber: 4.2 Consensus size: 14
3604170 ATAATAGTAT
*
3604180 AAATAAACAAAATA
1 AAATAAAAAAAATA
*
3604194 AATTAATGACAAAAATA
1 AAATAA--A-AAAAATA
3604211 AAATAAAATAAAATA
1 AAATAAAA-AAAATA
3604226 AAATAAAAAAAATA
1 AAATAAAAAAAATA
3604240 AAA
1 AAA
3604243 AACAATGGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
14 15 0.36
15 15 0.36
16 1 0.02
17 11 0.26
ACGTcount: A:0.78, C:0.03, G:0.02, T:0.17
Consensus pattern (14 bp):
AAATAAAAAAAATA
Found at i:3605505 original size:23 final size:23
Alignment explanation
Indices: 3605479--3605523 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
3605469 TGACTAGACC
*
3605479 TTCTGGAAGCTGCTGATTGGATA
1 TTCTAGAAGCTGCTGATTGGATA
*
3605502 TTCTAGAAGTTGCTGATTGGAT
1 TTCTAGAAGCTGCTGATTGGAT
3605524 GCCACGTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (23 bp):
TTCTAGAAGCTGCTGATTGGATA
Found at i:3607210 original size:649 final size:650
Alignment explanation
Indices: 3605942--3607241 Score: 2327
Period size: 649 Copynumber: 2.0 Consensus size: 650
3605932 GGTTTTTTTA
*
3605942 ATATATTTTAGAAGTTAGATATGGAAACTTATATATATGTTACTATCTCCACTTTGATTATTATG
1 ATATATTTTAGAAGTTAGATATGGAAACTTATATATATGATACTA-CTCCACTTTGATTATTATG
3606007 AATTTGAATAAAAATTAGAAATGCTTATATTTTTTACTCAAACACTGTATGTTTTCTTCATTGTA
65 AATTTGAATAAAAATTAGAAATGCTTATATTTTTTACTCAAACACTGTATGTTTTCTTCATTGTA
*
3606072 AAATATAGATGACGACTGAACCACATTACATTTATCTTGGTCAAACTAGATTATTAGAGTACATT
130 AAATATAGATGACGACTGAACCACATTACATTTATCTTAGTCAAACTAGATTATTAGAGTACATT
*
3606137 AATTTGGATCAGAATTAATATGTTTATTTATCTCTCCTTTGAAGTGAACATATAGGTTTTCTAAC
195 AATTTGAATCAGAATTAATATGTTTATTTATCTCTCCTTTGAAGTGAACATATAGGTTTTCTAAC
* * * *
3606202 ATATAATAATGTTCATTATGAATAATATGTGTCTATATTGGAATATTGATTTCAGGATCGGTATT
260 ATATAATAACGTTCATTATGAATAATACGTGTCTATATTGGAATATTGATTCCACGATCGGTATT
*
3606267 TTTTGTTATGAATTAATTAATAGATAAATAAGACTAATCTCTTTCACATATGATAATATAATTTT
325 TTTTGTTATGAATTAATTAATAGATAAATAAGACCAATCTCTTTCACATATGATAATATAATTTT
* *
3606332 GTCATTAAAAAGCCGATCAATCTATATAATGTCTTTAAAAAATCAGTTGATCGATAAATTTATTT
390 GTCACTAAAAAACCGATCAATCTATATAATGTCTTTAAAAAATCAGTTGATCGATAAATTTATTT
3606397 TTTTTAAGTTAATTACGCAAATAAACTTGATTCTTACTTATCTTCTACACTACTCACGATAAAAA
455 TTTTTAAGTTAATTACGCAAATAAACTTGATTCTTACTTATCTTCTACACTACTCACGATAAAAA
*
3606462 AAATAGTTCATTTAAGGTAATGATTAGAATAAATCCAGCAATAAATAATGATAAATTTTATTGCC
520 AAATAGTTCATTTAAGGTAATGATTAGAACAAATCCAGCAATAAATAATGATAAATTTTATTGCC
*
3606527 ATAATAAGCAACAAATTAGATTATCTTACCAAACATTGTTCACAAATGGATTTGTTTACAAGTAA
585 ATAATAAGCAACAAATAAGATTATCTTACCAAACATTGTTCACAAATGGATTTGTTTACAAGTAA
3606592 G
650 G
* *
3606593 ATATATTTTAGGAGTTAGATATGGAAAGTTATATATATGATACTA-TCCACTTTGATTATTATGA
1 ATATATTTTAGAAGTTAGATATGGAAACTTATATATATGATACTACTCCACTTTGATTATTATGA
3606657 ATTTGAATAAAAATTAGAAATGCTTATATTTTTTACTCAAACACTGTATGTTTTCTTCATTGTAA
66 ATTTGAATAAAAATTAGAAATGCTTATATTTTTTACTCAAACACTGTATGTTTTCTTCATTGTAA
* * *
3606722 AATATAGATGACGACTGATCCACATTACATTTATCTTAGTCAAATTAGATTATTGGAGTACATTA
131 AATATAGATGACGACTGAACCACATTACATTTATCTTAGTCAAACTAGATTATTAGAGTACATTA
3606787 ATTTGAATCAGAATTAATATGTTTATTTATCTCTCCTTTGAAGTGAACATATAGGTTTTCTAACA
196 ATTTGAATCAGAATTAATATGTTTATTTATCTCTCCTTTGAAGTGAACATATAGGTTTTCTAACA
*
3606852 TATAATAACGTTCATTATGAATAATACGTGTCTATCTTGGAATATTGATTCCACGATCGGTATTT
261 TATAATAACGTTCATTATGAATAATACGTGTCTATATTGGAATATTGATTCCACGATCGGTATTT
3606917 TTTGTTATGAATTAATTAATAGATAAATAAGACCAATCTCTTTCACATAT-AGTAATATAATTTT
326 TTTGTTATGAATTAATTAATAGATAAATAAGACCAATCTCTTTCACATATGA-TAATATAATTTT
*
3606981 GTCACTAAAAAACCGATCAATCTATATAATGTCTTTAAAAAA-CTGGTTGATCGATAAATTTATT
390 GTCACTAAAAAACCGATCAATCTATATAATGTCTTTAAAAAATC-AGTTGATCGATAAATTTATT
* *
3607045 TTTTTTAAGTTAATTACGCAAATAAACTTGATTCTTACTTATCTTTTACACTACTCACGATAAAT
454 TTTTTTAAGTTAATTACGCAAATAAACTTGATTCTTACTTATCTTCTACACTACTCACGATAAAA
* * *
3607110 AAAATAGTTCATTTAAGTTAATGATTAGAACAAATTCAGCAATGAATAATGATAAATTTTATTGC
519 AAAATAGTTCATTTAAGGTAATGATTAGAACAAATCCAGCAATAAATAATGATAAATTTTATTGC
*
3607175 CGTAATAAGCAACAAATAAGATTATCTTACCAAACATTGTTCACAAATGGATTTGTTTACAAGTA
584 CATAATAAGCAACAAATAAGATTATCTTACCAAACATTGTTCACAAATGGATTTGTTTACAAGTA
3607240 AG
649 AG
3607242 GTCACTCTTT
Statistics
Matches: 622, Mismatches: 25, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
648 2 0.00
649 578 0.93
651 42 0.07
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (650 bp):
ATATATTTTAGAAGTTAGATATGGAAACTTATATATATGATACTACTCCACTTTGATTATTATGA
ATTTGAATAAAAATTAGAAATGCTTATATTTTTTACTCAAACACTGTATGTTTTCTTCATTGTAA
AATATAGATGACGACTGAACCACATTACATTTATCTTAGTCAAACTAGATTATTAGAGTACATTA
ATTTGAATCAGAATTAATATGTTTATTTATCTCTCCTTTGAAGTGAACATATAGGTTTTCTAACA
TATAATAACGTTCATTATGAATAATACGTGTCTATATTGGAATATTGATTCCACGATCGGTATTT
TTTGTTATGAATTAATTAATAGATAAATAAGACCAATCTCTTTCACATATGATAATATAATTTTG
TCACTAAAAAACCGATCAATCTATATAATGTCTTTAAAAAATCAGTTGATCGATAAATTTATTTT
TTTTAAGTTAATTACGCAAATAAACTTGATTCTTACTTATCTTCTACACTACTCACGATAAAAAA
AATAGTTCATTTAAGGTAATGATTAGAACAAATCCAGCAATAAATAATGATAAATTTTATTGCCA
TAATAAGCAACAAATAAGATTATCTTACCAAACATTGTTCACAAATGGATTTGTTTACAAGTAAG
Found at i:3618198 original size:176 final size:176
Alignment explanation
Indices: 3617904--3618257 Score: 699
Period size: 176 Copynumber: 2.0 Consensus size: 176
3617894 AAAATTATTT
3617904 TAATGTTGAAAAATTGGAGTCACCACCAATCCTTTATTCAGTGTGATTGGATCACCACAAAATGT
1 TAATGTTGAAAAATTGGAGTCACCACCAATCCTTTATTCAGTGTGATTGGATCACCACAAAATGT
3617969 TTGAAATTCGTTTTGAAAAATATTTTGGTTTTCGTGATCCAGAAAATGAGTTCAGGAGTCGGTTA
66 TTGAAATTCGTTTTGAAAAATATTTTGGTTTTCGTGATCCAGAAAATGAGTTCAGGAGTCGGTTA
3618034 CGAATGAGGAAGGGTTAGCATCCTCATACGCCCAAAATTGGTACCA
131 CGAATGAGGAAGGGTTAGCATCCTCATACGCCCAAAATTGGTACCA
*
3618080 TAATGTTGAAAAATTGGAGTCGCCACCAATCCTTTATTCAGTGTGATTGGATCACCACAAAATGT
1 TAATGTTGAAAAATTGGAGTCACCACCAATCCTTTATTCAGTGTGATTGGATCACCACAAAATGT
3618145 TTGAAATTCGTTTTGAAAAATATTTTGGTTTTCGTGATCCAGAAAATGAGTTCAGGAGTCGGTTA
66 TTGAAATTCGTTTTGAAAAATATTTTGGTTTTCGTGATCCAGAAAATGAGTTCAGGAGTCGGTTA
3618210 CGAATGAGGAAGGGTTAGCATCCTCATACGCCCAAAATTGGTACCA
131 CGAATGAGGAAGGGTTAGCATCCTCATACGCCCAAAATTGGTACCA
3618256 TA
1 TA
3618258 TTGATTATTT
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 177 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (176 bp):
TAATGTTGAAAAATTGGAGTCACCACCAATCCTTTATTCAGTGTGATTGGATCACCACAAAATGT
TTGAAATTCGTTTTGAAAAATATTTTGGTTTTCGTGATCCAGAAAATGAGTTCAGGAGTCGGTTA
CGAATGAGGAAGGGTTAGCATCCTCATACGCCCAAAATTGGTACCA
Found at i:3619130 original size:29 final size:29
Alignment explanation
Indices: 3619047--3619333 Score: 170
Period size: 30 Copynumber: 9.7 Consensus size: 29
3619037 TTTTTGGACA
** * *
3619047 TCTAGGGGTAAAACGGTAGTTTTTGGAAG
1 TCTAGGGGTAAAAATGTAATTTTTAGAAG
* * * *
3619076 TTTTA-GGGTAAAAAATGGAGTCTTTAGATA-
1 -TCTAGGGGT-AAAAATGTAATTTTTAGA-AG
3619106 TCTAGGGGTAAAAATGTAATTTTTAGAAG
1 TCTAGGGGTAAAAATGTAATTTTTAGAAG
* * * *
3619135 TTTCGTGGTCAAAAATGGAATTTTT-GAAAG
1 TCTAGGGGT-AAAAATGTAATTTTTAG-AAG
* * *
3619165 TTTGGGGGTAAAAATGTAATTTTTAAAAG
1 TCTAGGGGTAAAAATGTAATTTTTAGAAG
* * ** *
3619194 TTTCGAGGCCAAAAATGTGATTTTTAGAAG
1 TCTAG-GGGTAAAAATGTAATTTTTAGAAG
* * *
3619224 TCTGGGGGTAAATATGTAATTTTTGGAAG
1 TCTAGGGGTAAAAATGTAATTTTTAGAAG
* *
3619253 -CTTCAGGGTTAAAAATGTAATTTTTGGAAG
1 TC-T-AGGGGTAAAAATGTAATTTTTAGAAG
* * *
3619283 T-TCGGGGGTAATAATGTAATTTTCAGAAG
1 TCT-AGGGGTAAAAATGTAATTTTTAGAAG
* * *
3619312 TTTTGAGGTCAAAAATGTAATT
1 TCTAGGGGT-AAAAATGTAATT
3619334 ATAGAGAAGT
Statistics
Matches: 203, Mismatches: 41, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
28 2 0.01
29 98 0.48
30 102 0.50
31 1 0.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (29 bp):
TCTAGGGGTAAAAATGTAATTTTTAGAAG
Found at i:3619149 original size:59 final size:58
Alignment explanation
Indices: 3619028--3619333 Score: 262
Period size: 59 Copynumber: 5.2 Consensus size: 58
3619018 AATCAAGATC
* * * ** * * * *
3619028 AAAATAGAATTTTTGGACA-TCTAGGGGTAAAACGGTAGTTTTTGGAAGTTTTAGGGTAA
1 AAAATGGAATTTTTAGA-AGTCTGGGGGTAAAAATGTAATTTTTAGAAG-TTTCGGGTCA
* * *
3619087 AAAATGGAGTCTTTAGATA-TCTAGGGGTAAAAATGTAATTTTTAGAAGTTTCGTGGTCA
1 AAAATGGAATTTTTAGA-AGTCTGGGGGTAAAAATGTAATTTTTAGAAGTTTCG-GGTCA
* * *
3619146 AAAATGGAATTTTT-GAAAGTTTGGGGGTAAAAATGTAATTTTTAAAAGTTTCGAGGCCA
1 AAAATGGAATTTTTAG-AAGTCTGGGGGTAAAAATGTAATTTTTAGAAGTTTCG-GGTCA
* * * *
3619205 AAAATGTG-ATTTTTAGAAGTCTGGGGGTAAATATGTAATTTTTGGAAGCTTCAGGGTTA
1 AAAATG-GAATTTTTAGAAGTCTGGGGGTAAAAATGTAATTTTTAGAAGTTTC-GGGTCA
* * * * *
3619264 AAAATGTAATTTTTGGAAGT-TCGGGGGTAATAATGTAATTTTCAGAAGTTTTGAGGTCA
1 AAAATGGAATTTTTAGAAGTCT-GGGGGTAAAAATGTAATTTTTAGAAGTTTCG-GGTCA
*
3619323 AAAATGTAATT
1 AAAATGGAATT
3619334 ATAGAGAAGT
Statistics
Matches: 204, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
58 8 0.04
59 193 0.95
60 3 0.01
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (58 bp):
AAAATGGAATTTTTAGAAGTCTGGGGGTAAAAATGTAATTTTTAGAAGTTTCGGGTCA
Found at i:3619151 original size:30 final size:29
Alignment explanation
Indices: 3619110--3619333 Score: 218
Period size: 30 Copynumber: 7.6 Consensus size: 29
3619100 TAGATATCTA
3619110 GGGGTAAAAATGTAATTTTTAGAAGTTTC
1 GGGGTAAAAATGTAATTTTTAGAAGTTTC
* * *
3619139 GTGGTCAAAAATGGAATTTTT-GAAAGTTTG
1 GGGGT-AAAAATGTAATTTTTAG-AAGTTTC
*
3619169 GGGGTAAAAATGTAATTTTTAAAAGTTTC
1 GGGGTAAAAATGTAATTTTTAGAAGTTTC
** * * *
3619198 GAGGCCAAAAATGTGATTTTTAGAAGTCTG
1 G-GGGTAAAAATGTAATTTTTAGAAGTTTC
* * *
3619228 GGGGTAAATATGTAATTTTTGGAAGCTTC
1 GGGGTAAAAATGTAATTTTTAGAAGTTTC
* *
3619257 AGGGTTAAAAATGTAATTTTTGGAAG-TTC
1 -GGGGTAAAAATGTAATTTTTAGAAGTTTC
* * *
3619286 GGGGGTAATAATGTAATTTTCAGAAGTTTT
1 -GGGGTAAAAATGTAATTTTTAGAAGTTTC
*
3619316 GAGGTCAAAAATGTAATT
1 GGGGT-AAAAATGTAATT
3619334 ATAGAGAAGT
Statistics
Matches: 157, Mismatches: 31, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
29 74 0.47
30 83 0.53
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGGTAAAAATGTAATTTTTAGAAGTTTC
Found at i:3619327 original size:118 final size:119
Alignment explanation
Indices: 3619072--3619329 Score: 319
Period size: 118 Copynumber: 2.2 Consensus size: 119
3619062 GTAGTTTTTG
*
3619072 GAAGTTTT-AGGGTAAAAAATG-GAGTCTTTAGATATCTAGGGGTAAAAATGTAATTTTTAGAAG
1 GAAGTTTTGA-GGTCAAAAATGTGAGTCTTTAGATATCTAGGGGTAAAAATGTAATTTTTAGAAG
* * *
3619135 TTTCGTGGTCAAAAATGGAATTTTTGAAAGTTTGGGGGTAAAAATGTAATTTTTA
65 CTTCGTGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTAAAAATGTAATTTTCA
* * * * * * *
3619190 AAAGTTTCGAGGCCAAAAATGTGA-TTTTTAGA-AGTCTGGGGGTAAATATGTAATTTTTGGAAG
1 GAAGTTTTGAGGTCAAAAATGTGAGTCTTTAGATA-TCTAGGGGTAAAAATGTAATTTTTAGAAG
* * * *
3619253 CTTCAG-GGTTAAAAATGTAATTTTTGGAAGTTCGGGGGTAATAATGTAATTTTCA
65 CTTC-GTGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTAAAAATGTAATTTTCA
3619308 GAAGTTTTGAGGTCAAAAATGT
1 GAAGTTTTGAGGTCAAAAATGT
3619330 AATTATAGAG
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
117 1 0.01
118 113 0.96
119 4 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (119 bp):
GAAGTTTTGAGGTCAAAAATGTGAGTCTTTAGATATCTAGGGGTAAAAATGTAATTTTTAGAAGC
TTCGTGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTAAAAATGTAATTTTCA
Found at i:3619347 original size:30 final size:29
Alignment explanation
Indices: 3619112--3619366 Score: 182
Period size: 30 Copynumber: 8.6 Consensus size: 29
3619102 GATATCTAGG
*
3619112 GGTAAAAATGTAATTTTT-AGAAGTTTCGT
1 GGTAAAAATGTAATTTTTGAGAAGTTT-GA
* *
3619141 GGTCAAAAATGGAATTTTTGA-AAGTTTGGG
1 GGT-AAAAATGTAATTTTTGAGAAGTTT-GA
*
3619171 GGTAAAAATGTAATTTTT-AAAAGTTTCGA
1 GGTAAAAATGTAATTTTTGAGAAGTTT-GA
* * * *
3619200 GGCCAAAAATGTGATTTTT-AGAAGTCTGGG
1 GG-TAAAAATGTAATTTTTGAGAAGT-TTGA
* * *
3619230 GGTAAATATGTAATTTTTG-GAAGCTTCA
1 GGTAAAAATGTAATTTTTGAGAAGTTTGA
* *
3619258 GGGTTAAAAATGTAATTTTTG-GAAGTTCGGG
1 -GG-TAAAAATGTAATTTTTGAGAAGTT-TGA
* *
3619289 GGTAATAATGTAA-TTTTCAGAAGTTTTGA
1 GGTAAAAATGTAATTTTTGAGAAG-TTTGA
* *
3619318 GGTCAAAAATGTAATTATAGAGAAGTTTGA
1 GGT-AAAAATGTAATTTTTGAGAAGTTTGA
* *
3619348 GGTTTAAAATATAATTTTT
1 GG-TAAAAATGTAATTTTT
3619367 TAATAGTTTA
Statistics
Matches: 177, Mismatches: 35, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
28 6 0.03
29 63 0.36
30 98 0.55
31 10 0.06
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (29 bp):
GGTAAAAATGTAATTTTTGAGAAGTTTGA
Found at i:3621190 original size:27 final size:27
Alignment explanation
Indices: 3621159--3621219 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
3621149 GATTTTAAGT
**
3621159 TTTAAAAC-TATTTTAAATGTATTTAAA
1 TTTAAAACATA-TTTAAATGTAAATAAA
*
3621186 TTTAAAACATATTTAAATTTAAATAAA
1 TTTAAAACATATTTAAATGTAAATAAA
3621213 TTTAAAA
1 TTTAAAA
3621220 TCAATTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (27 bp):
TTTAAAACATATTTAAATGTAAATAAA
Found at i:3621234 original size:27 final size:27
Alignment explanation
Indices: 3621182--3621235 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
3621172 TAAATGTATT
* *
3621182 TAAATTTAAAACATATTTAAATTTAAA
1 TAAATTTAAAACATATTCAAACTTAAA
3621209 TAAATTTAAAATCA-ATTCAAACTTAAA
1 TAAATTTAAAA-CATATTCAAACTTAAA
3621236 AATCAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (27 bp):
TAAATTTAAAACATATTCAAACTTAAA
Found at i:3621939 original size:206 final size:206
Alignment explanation
Indices: 3621575--3622072 Score: 764
Period size: 206 Copynumber: 2.4 Consensus size: 206
3621565 ACTGGTTTCA
* * * * * * ** *
3621575 TTGACTTGGCCTTCTTCTCCGTATCTCATCAAGAAGATGACCGCGTCACTTGTTTTGATCCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATTCACTT
* * *
3621640 CTCTGTGTTTCATCAGGAAGACGGATTTGGTTCACTTCTTCGTATCTCATCAGGAAGCTAACCAT
66 CTCTGTATTTCATCAGGAAGACGAATTTGGTCCACTTCTTCGTATCTCATCAGGAAGCTAACCAT
*
3621705 TTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGAAAGCTGGGGTTCGAAGATTTTCTCACAT
131 TTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACAT
3621770 CGAGCGTGGGT
196 CGAGCGTGGGT
*
3621781 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATTCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATTCACTT
* * * *
3621846 CTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTC-TCAGTATCTCATTAGGAAGTTAACCA
66 CTCTGTATTTCATCAGGAAGACGAATTTGGTCCACTTCTTC-GTATCTCATCAGGAAGCTAACCA
* * * *
3621910 TTTTATTGCTTCGACTTGCTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTTGCTCACA
130 TTTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACA
3621975 TCGAGCGTGGGT
195 TCGAGCGTGGGT
* *
3621987 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAATATGACCGTATCGCTTGTTTCAATTCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATTCACTT
3622052 CTCTGTATTTCATCAGGAAGA
66 CTCTGTATTTCATCAGGAAGA
3622073 TGACCGCCTC
Statistics
Matches: 264, Mismatches: 27, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
205 2 0.01
206 262 0.99
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (206 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATTCACTT
CTCTGTATTTCATCAGGAAGACGAATTTGGTCCACTTCTTCGTATCTCATCAGGAAGCTAACCAT
TTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACAT
CGAGCGTGGGT
Found at i:3622246 original size:39 final size:39
Alignment explanation
Indices: 3622140--3622234 Score: 190
Period size: 39 Copynumber: 2.4 Consensus size: 39
3622130 GGATGGCTGC
3622140 GATCTGCCCCAAGCTCGACGTAAGAGATCGAACAGTGGT
1 GATCTGCCCCAAGCTCGACGTAAGAGATCGAACAGTGGT
3622179 GATCTGCCCCAAGCTCGACGTAAGAGATCGAACAGTGGT
1 GATCTGCCCCAAGCTCGACGTAAGAGATCGAACAGTGGT
3622218 GATCTGCCCCAAGCTCG
1 GATCTGCCCCAAGCTCG
3622235 GGTTAAGAGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.18
Consensus pattern (39 bp):
GATCTGCCCCAAGCTCGACGTAAGAGATCGAACAGTGGT
Found at i:3622510 original size:93 final size:92
Alignment explanation
Indices: 3622387--3622616 Score: 415
Period size: 93 Copynumber: 2.5 Consensus size: 92
3622377 TTTGATGTCG
* *
3622387 AAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
*
3622452 CTTCAAGAGGATAGGAATTGATGTTTTA
66 CTTCAAGAGGATAGGAATTAATG-TTTA
3622480 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
3622545 CTTCAAGAGGATAGGAATTAATGTTTA
66 CTTCAAGAGGATAGGAATTAATGTTTA
*
3622572 AAGCTTCATCTTGCTCTTGCTACAACTTCAGAGAGATAAAGACTT
1 AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTT
3622617 TTCTTTTTGT
Statistics
Matches: 133, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 48 0.36
93 85 0.64
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (92 bp):
AAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAA
CTTCAAGAGGATAGGAATTAATGTTTA
Found at i:3622705 original size:51 final size:51
Alignment explanation
Indices: 3622650--3623023 Score: 262
Period size: 50 Copynumber: 7.4 Consensus size: 51
3622640 TGGATTCTCT
* * * *
3622650 GTTGCGGTCTTAGATATTTCCCGTCGTGTCTTTTAAGGTACACGATCTGTC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGATCCGCC
* * ** * *
3622701 GTTGC-GACTTAGACCTTTCCC-TTTTGTCTTTTTACAGTACTA-GATCCGCC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGA-GGTAC-ACGATCCGCC
* * * * *
3622751 GTTGCGGTCTTAGATCTTTCTCGTCATGTCTTCTGAGGCACACGGTCCGCC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGATCCGCC
* * ** * * *** *
3622802 GTTGC-GACTTAGACCTTTCCC-TTTTGTCGTTTTGCGATATTGGATCCGTC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTC-TTTTGAGGTACACGATCCGCC
* *
3622852 GTTGTGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGGTCCGCC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGATCCGCC
* * * ** * * **
3622903 GTTG-TGACTTAGACCTTTCCC-TTTTTTCTTTTTACGGTACTGGATCCGCC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGA-GGTACACGATCCGCC
* * * * *
3622953 GTTGTGGT-TTAGATCTTTCCCGTCATGTCTTCTCAGGTACACGGTCCGCC
1 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGATCCGCC
* *
3623003 GTTGC-GACTTAGACCTTTCCC
1 GTTGCGGTCTTAGATCTTTCCC
3623024 TTTTATCTTT
Statistics
Matches: 242, Mismatches: 69, Indels: 25
0.72 0.21 0.07
Matches are distributed among these distances:
49 25 0.10
50 128 0.53
51 75 0.31
52 14 0.06
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39
Consensus pattern (51 bp):
GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGATCCGCC
Found at i:3622805 original size:101 final size:101
Alignment explanation
Indices: 3622621--3623044 Score: 571
Period size: 101 Copynumber: 4.2 Consensus size: 101
3622611 AGACTTTTCT
* * * * * * * *
3622621 TTTTGTCTTTTTGCGGTACTGGATTCTCTGTTGCGGTCTTAGATATTTCCCGTCGTGTCTTTTAA
1 TTTTGTCTTTTTACGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTTCTGA
* * *
3622686 GGTACACGATCTGTCGTTGCGACTTAGACCTTTCCC
66 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
* * *
3622722 TTTTGTCTTTTTACAGTACTAGATCCGCCGTTGCGGTCTTAGATCTTTCTCGTCATGTCTTCTGA
1 TTTTGTCTTTTTACGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTTCTGA
*
3622787 GGCACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
66 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
* * * * * * * *
3622823 TTTTGTCGTTTTGCGATATTGGATCCGTCGTTGTGGTCTTAGATCTTTCCCGTCGTGTCTTTTGA
1 TTTTGTCTTTTTACGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTTCTGA
*
3622888 GGTACACGGTCCGCCGTTGTGACTTAGACCTTTCCC
66 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
* * *
3622924 TTTTTTCTTTTTACGGTACTGGATCCGCCGTTGTGGT-TTAGATCTTTCCCGTCATGTCTTCTCA
1 TTTTGTCTTTTTACGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTTCTGA
3622988 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
66 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
* * *
3623024 TTTTATCTTTTTGCGATACTG
1 TTTTGTCTTTTTACGGTACTG
3623045 AGACCTGTAG
Statistics
Matches: 282, Mismatches: 41, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
100 77 0.27
101 205 0.73
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.41
Consensus pattern (101 bp):
TTTTGTCTTTTTACGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGTCTTCTGA
GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCC
Found at i:3623665 original size:106 final size:106
Alignment explanation
Indices: 3623532--3623737 Score: 313
Period size: 106 Copynumber: 1.9 Consensus size: 106
3623522 AGGCGAATGA
* * *
3623532 AATTTTATTGAAGGTAAAGCTCACATGAATGGAAAGATTAAAAGTGACTCATATTGGTCAAAGGA
1 AATTTTATTGAAGGCAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATTGGTCAAAGGA
* *
3623597 TGCCAAATATAAAGTGAGCAAAGAATAGGGTTAGGTGGATG
66 TGCCAAATATAAAGTAAGCAAAGAATAGAGTTAGGTGGATG
* **
3623638 AATTTTATTGGAGGCAAAGCTTGCATGAATGAAAAGATTAAAAGTGACCCATATTGGTCAAAGGA
1 AATTTTATTGAAGGCAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATTGGTCAAAGGA
* * *
3623703 TGCCGAATATAGAGTAAGCAAAGAGTAGAGTTAGG
66 TGCCAAATATAAAGTAAGCAAAGAATAGAGTTAGG
3623738 AGGCAAAGCT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 89 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.25
Consensus pattern (106 bp):
AATTTTATTGAAGGCAAAGCTCACATGAATGAAAAGATTAAAAGTGACCCATATTGGTCAAAGGA
TGCCAAATATAAAGTAAGCAAAGAATAGAGTTAGGTGGATG
Found at i:3624320 original size:9 final size:8
Alignment explanation
Indices: 3624268--3624318 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
3624258 CGACCTCTCC
3624268 TTTTCTTT
1 TTTTCTTT
3624276 TTTCTCTTT
1 TTT-TCTTT
*
3624285 TTTTGTTT
1 TTTTCTTT
* *
3624293 TTTT-ATG
1 TTTTCTTT
3624300 TTTTCTTT
1 TTTTCTTT
*
3624308 TTCTCTTT
1 TTTTCTTT
3624316 TTT
1 TTT
3624319 CTTCCATTGA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 5 0.15
8 21 0.62
9 8 0.24
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (8 bp):
TTTTCTTT
Found at i:3642336 original size:208 final size:208
Alignment explanation
Indices: 3641946--3642563 Score: 862
Period size: 208 Copynumber: 3.0 Consensus size: 208
3641936 TGAAACGTTG
* *
3641946 AAACAATGAGGTGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGTGAAGC
1 AAACAATGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
* * * * *
3642011 TCAATATGAGTGAAAATT-CAAACCCATCTTCCTGATAAGATATAGAGAAA-TGGGTCAAAGCAA
66 TCAATATGAGTGAAACTTCCAACCCCATCTTCCTGATGAGATACAGA-AAAGTGGGTCAAAACAA
* * * *
3642074 TAAAGAGGTCATCTTCCTGAAGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATAT
130 TAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATAAGATAC
3642139 AGAGAAGCGGATTA
195 AGAGAAGCGGATTA
** *
3642153 AATTAATGAGGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
1 AAACAATGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
* * * *
3642218 TCAATATGAATGAGACTTCCAACCCCATCTTCTTGATGAGATACAGAAAAGTGGGTCAAAATAAT
66 TCAATATGAGTGAAACTTCCAACCCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAACAAT
* * *
3642283 AAAGCGGTCGTCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGATTAGATACA
131 AAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATAAGATACA
3642348 GAGAAGCGGATTA
196 GAGAAGCGGATTA
* * * * * *
3642361 AAACAAGTGATGCGATCATCTTCTTGATGAGATACAAAGAAGTAGACCAAATCGATGAACCGAAG
1 AAACAA-TGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAG
** * * *
3642426 CTCAATGCGAGTGAAACTTCAAACCCTCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAACA
65 CTCAATATGAGTGAAACTTCCAACCC-CATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAACA
* * * *
3642491 ATAAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTGCACCAAATCCATCTTCTTGATAAGATA
129 ATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATAAGATA
*
3642556 CAAAGAAG
194 CAGAGAAG
3642564 TAAACCAAAT
Statistics
Matches: 361, Mismatches: 46, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
207 78 0.22
208 112 0.31
209 72 0.20
210 99 0.27
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (208 bp):
AAACAATGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
TCAATATGAGTGAAACTTCCAACCCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAACAAT
AAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATAAGATACA
GAGAAGCGGATTA
Found at i:3642542 original size:37 final size:37
Alignment explanation
Indices: 3642501--3642574 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
3642491 ATAAAGCGGT
* * **
3642501 CATCTTCCTAATGAGATACAGAGAAGTGCACCAAATC
1 CATCTTCCTAATAAGATACAAAGAAGTAAACCAAATC
* *
3642538 CATCTTCTTGATAAGATACAAAGAAGTAAACCAAATC
1 CATCTTCCTAATAAGATACAAAGAAGTAAACCAAATC
3642575 AAATGAAGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.23
Consensus pattern (37 bp):
CATCTTCCTAATAAGATACAAAGAAGTAAACCAAATC
Found at i:3642686 original size:160 final size:161
Alignment explanation
Indices: 3642377--3642697 Score: 402
Period size: 160 Copynumber: 2.0 Consensus size: 161
3642367 GTGATGCGAT
* * * * *
3642377 CATCTTCTTGATGAGATACAAAGAAGTAGACCAAATCGATGAACCGAAGCTCAATGCGAGTGAAA
1 CATCTTCTTGATAAGATACAAAGAAGTAAACCAAATCAATGAACCAAAGCTCAATGCAAGTGAAA
* * *
3642442 CTTCAAACCCTCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAACAATAAAGCGGTCATCTT
66 CTTCAAACCCTCATCTTCCTGAAGAGATACTGAGAAGTGGATCAAAACAATAAAGCGATCATCTT
*
3642507 CCTAATGAGATACAGAGAAGT-GCACCAAATC
131 CCGAATGAGATACAGAGAAGTAG-ACCAAATC
* *
3642538 CATCTTCTTGATAAGATACAAAGAAGTAAACCAAATCAAATGAAGCAAAGTTCAATGCAAGTGAA
1 CATCTTCTTGATAAGATACAAAGAAGTAAACCAAATC-AATGAACCAAAGCTCAATGCAAGTGAA
* * * *
3642603 A-TTCCAAA-TC-CATCTTCTTGAAGAGATA-TAGAGAAGTGGATCACAATAATGAAA-CGATCA
65 ACTT-CAAACCCTCATCTTCCTGAAGAGATACT-GAGAAGTGGATCAAAACAAT-AAAGCGATCA
* *
3642663 TCTTCCGGATGAGATATAGAGAAGTAGACCAAATC
127 TCTTCCGAATGAGATACAGAGAAGTAGACCAAATC
3642698 AAATGAAGCA
Statistics
Matches: 138, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
159 1 0.01
160 68 0.49
161 42 0.30
162 27 0.20
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (161 bp):
CATCTTCTTGATAAGATACAAAGAAGTAAACCAAATCAATGAACCAAAGCTCAATGCAAGTGAAA
CTTCAAACCCTCATCTTCCTGAAGAGATACTGAGAAGTGGATCAAAACAATAAAGCGATCATCTT
CCGAATGAGATACAGAGAAGTAGACCAAATC
Found at i:3642821 original size:125 final size:123
Alignment explanation
Indices: 3642551--3642809 Score: 312
Period size: 125 Copynumber: 2.1 Consensus size: 123
3642541 CTTCTTGATA
* * * *
3642551 AGATACAAAGAAGTAAACCAAATCAAATGAAGCAAAGTTCAATGCAAGTGAAATTCCAAATCCAT
1 AGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGCAAGTGAAATTCCAAACCCAT
* * * *
3642616 CTTCTTGAAGAGATATAGAGAAGTGGATCACAATAATGAAACGATCATCTTCCGGATG
66 CTTCCTGAAGAGATATAGAGAAGTGGATCACAACAATGAAACAATCATCTTCCGAATG
*
3642674 AGATATAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATG-AGAGTGAAACTT-CAAACCC
1 AGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGCA-AGTGAAA-TTCCAAA--C
* * *
3642737 CCATCTTCCTGAGGAGATACT-GAGAAGTGGATCA-AAGCAAT-AAAGCAATCGTCTTCCTAATG
62 CCATCTTCCTGAAGAGATA-TAGAGAAGTGGATCACAA-CAATGAAA-CAATCATCTTCCGAATG
3642799 AGATACAGAGA
1 AGATACAGAGA
3642810 GTTGGACCAA
Statistics
Matches: 116, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
122 1 0.01
123 51 0.44
124 7 0.06
125 56 0.48
126 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (123 bp):
AGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGCAAGTGAAATTCCAAACCCAT
CTTCCTGAAGAGATATAGAGAAGTGGATCACAACAATGAAACAATCATCTTCCGAATG
Found at i:3643001 original size:210 final size:209
Alignment explanation
Indices: 3642660--3643449 Score: 1041
Period size: 210 Copynumber: 3.8 Consensus size: 209
3642650 AATGAAACGA
** * * *
3642660 TCATCTTCCGGATGAGATATAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGAGAGTGA
1 TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATC-GATGAAGCAAAGCTCAATGTGAGTGA
* * **
3642725 AACTTCAAACCCCCATCTTCCTGAGGAGATACTGAGAAGTGGATCAAAGCAATAAAGCAATCGTC
65 AACTTCAAACCCCCATCTTCCTGATGAGATACTGAAAAGTGGATCAAAGCAATAAAGCGGTCGTC
* ** * *
3642790 TTCCTAATGAGATACAGAGAGTTGGACCAAATTTGTCTTCCTGATAAGATACAGAGAAGCGAATT
130 TTCTTAATGAGATACAGAGAG-TGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGATT
**
3642855 AAAACAAGTGATGTTG
194 AAAACAAGTGATGCAG
* **
3642871 TCATCTTCTTGATCAGATACAGAGAAGTAGACCAAATCGATGAAGCGTAGCTCAATGTGAGTGAA
1 TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCAAAGCTCAATGTGAGTGAA
* * * * * *
3642936 ACTTCGAACCCTCATTTTCCTGATGAGGTATTGAAAAGTGGATCAAAGCAATAAAGTGGTCGTCT
66 ACTTCAAACCCCCATCTTCCTGATGAGATACTGAAAAGTGGATCAAAGCAATAAAGCGGTCGTCT
* * *
3643001 TCTTAATGAGATACAGATAAGTAGACCAAATCCGTCTTCTTGATGAGATACAGAGAAGCGGATTA
131 TCTTAATGAGATACAGA-GAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGATTA
3643066 AAACAAGTGATGCAG
195 AAACAAGTGATGCAG
3643081 TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCGATTG-AGCAAAGCTCAATGTGAGTGA
1 TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCGA-TGAAGCAAAGCTCAATGTGAGTGA
* * **
3643145 AACTTCGAACCCCCATCTTCCTGATGAGGTACT-AAGAAGTGGATCAAAAAAATAAAGCGGTCGT
65 AACTTCAAACCCCCATCTTCCTGATGAGATACTGAA-AAGTGGATCAAAGCAATAAAGCGGTCGT
* * *
3643209 CTTTTTGATGAGATACAGAGAAGTGGACTAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGAT
129 CTTCTTAATGAGATACAGAG-AGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGAT
*
3643274 TAAAACAAGTGATGCGG
193 TAAAACAAGTGATGCAG
* ** *
3643291 TCATCTTCTTGATGAGATACAGGGAAGTAGACCAAATCGATGAAGTGAAGCTCAATGCGAGTGAA
1 TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCAAAGCTCAATGTGAGTGAA
* * * *
3643356 ACTCCAAACCCCTATCTTCCTGATGAGATA-TAGAGAAGTAGG-TCGAAA-CAATAAAGCGGTCA
66 ACTTCAAACCCCCATCTTCCTGATGAGATACT-GAAAAGT-GGATC-AAAGCAATAAAGCGGTCG
* *
3643418 TCTTCTTGATGAGATACAGAGAAGTAGACCAA
128 TCTTCTTAATGAGATACAGAG-AGTGGACCAA
3643450 GAGATGAAAC
Statistics
Matches: 512, Mismatches: 58, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
209 5 0.01
210 463 0.90
211 44 0.09
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (209 bp):
TCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCAAAGCTCAATGTGAGTGAA
ACTTCAAACCCCCATCTTCCTGATGAGATACTGAAAAGTGGATCAAAGCAATAAAGCGGTCGTCT
TCTTAATGAGATACAGAGAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGATTAA
AACAAGTGATGCAG
Found at i:3643310 original size:86 final size:85
Alignment explanation
Indices: 3643160--3643328 Score: 214
Period size: 86 Copynumber: 2.0 Consensus size: 85
3643150 CGAACCCCCA
* * * *
3643160 TCTTCCTGATGAGGTACTAAGAAGTGGATCAAAAAAATAAAGCGGTCGTCTTTTTGATGAGATAC
1 TCTTCCTGATGAGATACTAAGAAGCGGATCAAAAAAATAAAGCGGTCATCTTCTTGATGAGATAC
* *
3643225 AGAGAAGTGGACTAAATCCG
66 AGAGAAGTAGACCAAATCCG
* * * *
3643245 TCTTCCTGATGAGATAC-AGAGAAGCGGATTAAAACAAGTGATGCGGTCATCTTCTTGATGAGAT
1 TCTTCCTGATGAGATACTA-AGAAGCGGATCAAAA-AAATAAAGCGGTCATCTTCTTGATGAGAT
*
3643309 ACAGGGAAGTAGACCAAATC
64 ACAGAGAAGTAGACCAAATC
3643329 GATGAAGTGA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
84 1 0.01
85 29 0.41
86 41 0.58
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (85 bp):
TCTTCCTGATGAGATACTAAGAAGCGGATCAAAAAAATAAAGCGGTCATCTTCTTGATGAGATAC
AGAGAAGTAGACCAAATCCG
Found at i:3643410 original size:420 final size:420
Alignment explanation
Indices: 3642606--3643449 Score: 1160
Period size: 420 Copynumber: 2.0 Consensus size: 420
3642596 AAGTGAAATT
* * * *
3642606 CCAAATCCATCTTCTTGAAGAGATATAGAGAAGTGGATCACAATAATGAAACGATCATCTTCCGG
1 CCAAATCCATCTTCTTGAAGAGATACAGAGAAGCGGATCAAAACAATGAAACGATCATCTTCCGG
*
3642671 ATGAGATATAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGAGAGTGAAACTTCAAACC
66 ATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGAGAGTGAAACTTCAAACC
* **
3642736 CCCATCTTCCTGAGGAGATACTGAGAAGTGGATCAAAGCAATAAAGCAATCGTCTTCCTAATGAG
131 CCCATCTTCCTGAGGAGATACTAAGAAGTGGATCAAAAAAATAAAGCAATCGTCTTCCTAATGAG
**
3642801 ATACAGAGAGTTGGACCAAATTTGTCTTCCTGATAAGATACAGAGAAGCGAATTAAAACAAGTGA
196 ATACAGAGAGTTGGACCAAATCCGTCTTCCTGATAAGATACAGAGAAGCGAATTAAAACAAGTGA
** * *
3642866 TGTTGTCATCTTCTTGATCAGATACAGAGAAGTAGACCAAATCGATGAAGCGTAGCTCAATGTGA
261 TGCGGTCATCTTCTTGATCAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGCGA
* * * * * *
3642931 GTGAAACTTCGAACCCTCATTTTCCTGATGAGGTATTGAAAAGTGGATCAAAGCAATAAAGTGGT
326 GTGAAACTCCAAACCCTCATCTTCCTGATGAGATATAGAAAAGTGGATCAAAGCAATAAAGCGGT
* *
3642996 CGTCTTCTTAATGAGATACAGATAAGTAGA
391 CATCTTCTTAATGAGATACAGAGAAGTAGA
* * * ** *
3643026 CCAAATCCGTCTTCTTGATGAGATACAGAGAAGCGGATTAAAACAAGTGATGC-AGTCATCTTCT
1 CCAAATCCATCTTCTTGAAGAGATACAGAGAAGCGGATCAAAACAA-TGAAACGA-TCATCTTCC
* * * * *
3643090 TGATGAGATACAGAGAAGTAGACCAAATCGATTG-AGCAAAGCTCAATGTGAGTGAAACTTCGAA
64 GGATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGAGAGTGAAACTTCAAA
* * ** ** *
3643154 CCCCCATCTTCCTGATGAGGTACTAAGAAGTGGATCAAAAAAATAAAGCGGTCGTCTTTTTGATG
129 CCCCCATCTTCCTGAGGAGATACTAAGAAGTGGATCAAAAAAATAAAGCAATCGTCTTCCTAATG
* * *
3643219 AGATACAGAGAAG-TGGACTAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGATTAAAACAAG
194 AGATACAGAG-AGTTGGACCAAATCCGTCTTCCTGATAAGATACAGAGAAGCGAATTAAAACAAG
* * *
3643283 TGATGCGGTCATCTTCTTGATGAGATACAGGGAAGTAGACCAAATCGATGAAGTGAAGCTCAATG
258 TGATGCGGTCATCTTCTTGATCAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATG
*
3643348 CGAGTGAAACTCCAAACCC-CTATCTTCCTGATGAGATATAGAGAAGTAGG-TCGAAA-CAATAA
323 CGAGTGAAACTCCAAACCCTC-ATCTTCCTGATGAGATATAGAAAAGT-GGATC-AAAGCAATAA
*
3643410 AGCGGTCATCTTCTTGATGAGATACAGAGAAGTAGA
385 AGCGGTCATCTTCTTAATGAGATACAGAGAAGTAGA
3643446 CCAA
1 CCAA
3643450 GAGATGAAAC
Statistics
Matches: 370, Mismatches: 48, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
419 1 0.00
420 320 0.86
421 49 0.13
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (420 bp):
CCAAATCCATCTTCTTGAAGAGATACAGAGAAGCGGATCAAAACAATGAAACGATCATCTTCCGG
ATGAGATACAGAGAAGTAGACCAAATCAAATGAAGCAAAGCTCAATGAGAGTGAAACTTCAAACC
CCCATCTTCCTGAGGAGATACTAAGAAGTGGATCAAAAAAATAAAGCAATCGTCTTCCTAATGAG
ATACAGAGAGTTGGACCAAATCCGTCTTCCTGATAAGATACAGAGAAGCGAATTAAAACAAGTGA
TGCGGTCATCTTCTTGATCAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGCGA
GTGAAACTCCAAACCCTCATCTTCCTGATGAGATATAGAAAAGTGGATCAAAGCAATAAAGCGGT
CATCTTCTTAATGAGATACAGAGAAGTAGA
Found at i:3644652 original size:24 final size:26
Alignment explanation
Indices: 3644614--3644662 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
3644604 AGTATGGCAG
*
3644614 ATTTACAAAGAAAACATTAGAAACAA
1 ATTTACAAAGAAAACATAAGAAACAA
3644640 ATTTA-AAA-AAAACATAAGAAACA
1 ATTTACAAAGAAAACATAAGAAACA
3644663 GGTTCTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.64
25 3 0.14
26 5 0.23
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.18
Consensus pattern (26 bp):
ATTTACAAAGAAAACATAAGAAACAA
Found at i:3645609 original size:59 final size:57
Alignment explanation
Indices: 3645487--3645832 Score: 309
Period size: 59 Copynumber: 5.8 Consensus size: 57
3645477 GTTTTATTTA
* *
3645487 AAAATCACATTTTGACCCTCGAACTTTTCCAAAAATTACATTTTGA-CCCTCAAACTTCTCC
1 AAAATCACATTTTGACCC-CAAACTTTT-C-AAAATTACATTTTAACCCCT-AAACTT-TCC
* *
3645548 AAAATCACATTTTAACTCCCAACCTTTTCAAAATTACATTTTAACCCCTAAACCTTTCC
1 AAAATCACATTTTGAC-CCCAAACTTTTCAAAATTACATTTTAACCCCTAAA-CTTTCC
** *** * *
3645607 AAAATTGCATTTTGACCTTGAACTTCTCTAAAATTACATTTTAACCCCTAAACTTTTCT
1 AAAATCACATTTTGACCCCAAACTTTTC-AAAATTACATTTTAACCCCTAAAC-TTTCC
* * * * ** * * *
3645666 AAAATTATATTTTAACCCCCAAATCTTTCCAAAATTATGTTTTGACTCTTAAACTTCTCC
1 AAAATCACATTTTGA-CCCCAAA-CTTTTCAAAATTACATTTTAACCCCTAAACTT-TCC
* * * *
3645726 AAAATCACATTTTGACCCTAAACTTCTCCAAAGTCACATTTTAA-CCCTAAACTTTCCC
1 AAAATCACATTTTGACCCCAAACTT-TTCAAAATTACATTTTAACCCCTAAACTTT-CC
*
3645784 AAAATCACATTTTTACCCCTAAACTTTTCCAAAATTACATTTTAACCCC
1 AAAATCACATTTTGACCCC-AAACTTTT-CAAAATTACATTTTAACCCC
3645833 GTATTCTTCA
Statistics
Matches: 229, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
57 1 0.00
58 39 0.17
59 113 0.49
60 48 0.21
61 26 0.11
62 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (57 bp):
AAAATCACATTTTGACCCCAAACTTTTCAAAATTACATTTTAACCCCTAAACTTTCC
Found at i:3645832 original size:30 final size:30
Alignment explanation
Indices: 3645508--3645832 Score: 313
Period size: 30 Copynumber: 10.9 Consensus size: 30
3645498 TTGACCCTCG
*
3645508 AACTTTTCCAAAAATTACATTTTGA-CCCTCA
1 AACTTTTCC-AAAATTACATTTTAACCCCT-A
* *
3645539 AACTTCTCCAAAATCACATTTTAACTCCC-A
1 AACTTTTCCAAAATTACATTTTAAC-CCCTA
*
3645569 ACCTTTT-CAAAATTACATTTTAACCCCTA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
* * * * *
3645598 AACCTTTCCAAAATTGCATTTTGA-CCTTG
1 AACTTTTCCAAAATTACATTTTAACCCCTA
* *
3645627 AACTTCTCTAAAATTACATTTTAACCCCTA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
* * *
3645657 AACTTTTCTAAAATTATATTTTAACCCCCA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
** * * *
3645687 AA-TCTTTCCAAAATTATGTTTTGACTCTTA
1 AACT-TTTCCAAAATTACATTTTAACCCCTA
* * *
3645717 AACTTCTCCAAAATCACATTTTGA-CCCTA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
* * *
3645746 AACTTCTCCAAAGTCACATTTTAA-CCCTA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
* * *
3645775 AACTTTCCCAAAATCACATTTTTACCCCTA
1 AACTTTTCCAAAATTACATTTTAACCCCTA
3645805 AACTTTTCCAAAATTACATTTTAACCCC
1 AACTTTTCCAAAATTACATTTTAACCCC
3645833 GTATTCTTCA
Statistics
Matches: 243, Mismatches: 43, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
28 3 0.01
29 95 0.39
30 133 0.55
31 9 0.04
32 3 0.01
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.36
Consensus pattern (30 bp):
AACTTTTCCAAAATTACATTTTAACCCCTA
Found at i:3647956 original size:28 final size:28
Alignment explanation
Indices: 3647925--3648015 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 28
3647915 AAAACGGTAA
*
3647925 TTTTGGATACTTGGGGTAAAATGGAAAT
1 TTTTGGACACTTGGGGTAAAATGGAAAT
*
3647953 TTTTGGACACTCGAGGGTAAAAAT--ATAAT
1 TTTTGGACACTTG-GGGT-AAAATGGA-AAT
* * *
3647982 TTTTGGACATTTACGGGTAAAATGGTAAT
1 TTTTGGACACTT-GGGGTAAAATGGAAAT
3648011 TTTTG
1 TTTTG
3648016 AGAGTTTTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
28 17 0.33
29 29 0.57
30 5 0.10
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (28 bp):
TTTTGGACACTTGGGGTAAAATGGAAAT
Found at i:3647973 original size:29 final size:29
Alignment explanation
Indices: 3647894--3648015 Score: 83
Period size: 29 Copynumber: 4.3 Consensus size: 29
3647884 GATTAAAAGC
** * * * *
3647894 AATTTTTGGATGCCCGAGGGCAAAACGGT
1 AATTTTTGGACACTCGAGGGTAAAATGGA
* *
3647923 AA-TTTTGGATACTTG-GGGTAAAATGGA
1 AATTTTTGGACACTCGAGGGTAAAATGGA
3647950 AATTTTTGGACACTCGAGGGTAAAAAT--A
1 AATTTTTGGACACTCGAGGGT-AAAATGGA
** *
3647978 TAATTTTTGGACA-TTTACGGGTAAAATGGT
1 -AATTTTTGGACACTCGA-GGGTAAAATGGA
3648008 AATTTTTG
1 AATTTTTG
3648016 AGAGTTTTGA
Statistics
Matches: 75, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
27 11 0.15
28 29 0.39
29 30 0.40
30 5 0.07
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (29 bp):
AATTTTTGGACACTCGAGGGTAAAATGGA
Found at i:3648051 original size:59 final size:59
Alignment explanation
Indices: 3647971--3648133 Score: 211
Period size: 59 Copynumber: 2.8 Consensus size: 59
3647961 ACTCGAGGGT
* * *
3647971 AAAAAT-ATAATTTTTGGACATTTACGGGTAAAATGGTAATTTTTGAGAGTTTTGAGCAC
1 AAAAATGA-AATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGCAC
* * ** * **
3648030 AAAAATGGAATTTTTTGACATTTGGGGGTAAAATGGTAATTTTTAAAAGTTTCGAGGTC
1 AAAAATGAAATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGCAC
*
3648089 AAAAATGAAATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTG
1 AAAAATGAAATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTG
3648134 GAAATTTGGG
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 88 1.00
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.37
Consensus pattern (59 bp):
AAAAATGAAATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGCAC
Found at i:3648062 original size:29 final size:28
Alignment explanation
Indices: 3647937--3648161 Score: 119
Period size: 29 Copynumber: 7.7 Consensus size: 28
3647927 TTGGATACTT
* *
3647937 GGGGTAAAATGGAAATTTTTGGACACTCG
1 GGGGTAAAATGG-AATTTTTGGACATTTG
* ** *
3647966 AGGGTAAAAATATAATTTTTGGACATTTA
1 GGGGT-AAAATGGAATTTTTGGACATTTG
* **
3647995 CGGGTAAAATGGTAATTTTTGAGAGTTTTG
1 GGGGTAAAATGG-AATTTTTG-GACATTTG
**** *
3648025 AGCACAAAAATGGAATTTTTTGACATTTG
1 -GGGGTAAAATGGAATTTTTGGACATTTG
* * *
3648054 GGGGTAAAATGGTAATTTTT-AAAAGTTTC
1 GGGGTAAAATGG-AATTTTTGGACA-TTTG
* * **
3648083 GAGGTCAAAAATGAAATTTTTGGACATTCA
1 GGGGT--AAAATGGAATTTTTGGACATTTG
* *
3648113 AGGGTAAAATGGTAATTTTTGGAAATTTG
1 GGGGTAAAATGG-AATTTTTGGACATTTG
* *
3648142 GGGGCAAAAATGTAATTTTT
1 GGGG-TAAAATGGAATTTTT
3648162 ATGAAGTTCG
Statistics
Matches: 143, Mismatches: 42, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
28 21 0.15
29 72 0.50
30 35 0.24
31 15 0.10
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (28 bp):
GGGGTAAAATGGAATTTTTGGACATTTG
Found at i:3648108 original size:118 final size:119
Alignment explanation
Indices: 3647963--3648231 Score: 311
Period size: 118 Copynumber: 2.3 Consensus size: 119
3647953 TTTTGGACAC
* **
3647963 TCGAGGGT-AAAAAT-ATAATTTTTGGACATTTACGGGTAAAATGGTAATTTTTGAGAGTTTTGA
1 TCGAGGGTCAAAAATGA-AATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTG-GAAATTTGA
* * **
3648026 GCACAAAAATGGAATTTTT-TGACA-TTTGGGGG-TAAAATGGTAATTTTTAAAAGTT
64 GCACAAAAATGGAATTTTTATGA-AGTTCGGGGGTTAAAAT-GCAATTTTTAAAAACT
* * *
3648081 TCGA-GGTCAAAAATGAAATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTGGAAATTTGGGG
1 TCGAGGGTCAAAAATGAAATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTGGAAATTTGAGC
* *
3648145 GCAAAAATGTAATTTTTATGAAGTTCGGGGGTTAAAATGCAATTTTTAAAAACT
66 ACAAAAATGGAATTTTTATGAAGTTCGGGGGTTAAAATGCAATTTTTAAAAACT
*
3648199 TCAAGGGTCAAAATATG--ATTTTTGGACAGTTTA
1 TCGAGGGTCAAAA-ATGAAATTTTTGGACA-TTTA
3648232 GGGACCTTAT
Statistics
Matches: 129, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
117 26 0.20
118 82 0.64
119 18 0.14
120 3 0.02
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (119 bp):
TCGAGGGTCAAAAATGAAATTTTTGGACATTTAAGGGTAAAATGGTAATTTTTGGAAATTTGAGC
ACAAAAATGGAATTTTTATGAAGTTCGGGGGTTAAAATGCAATTTTTAAAAACT
Found at i:3648175 original size:30 final size:30
Alignment explanation
Indices: 3648029--3648192 Score: 81
Period size: 30 Copynumber: 5.6 Consensus size: 30
3648019 GTTTTGAGCA
* * * *
3648029 CAAAAATGGAATTTTT-TGACATTTGGGGG
1 CAAAAATGTAATTTTTAGGAAATTCGGGGG
* * *
3648058 -TAAAATGGTAATTTTTA--AAAGTTTCGAGGT
1 CAAAAAT-GTAATTTTTAGGAAA--TTCGGGGG
* * **
3648088 CAAAAATGAAATTTTT-GGACATTCAAGGG
1 CAAAAATGTAATTTTTAGGAAATTCGGGGG
* *
3648117 -TAAAATGGTAATTTTT-GGAAATTTGGGGG
1 CAAAAAT-GTAATTTTTAGGAAATTCGGGGG
* *
3648146 CAAAAATGTAATTTTTATGAAGTTCGGGGG
1 CAAAAATGTAATTTTTAGGAAATTCGGGGG
** *
3648176 TTAAAATGCAATTTTTA
1 CAAAAATGTAATTTTTA
3648193 AAAACTTCAA
Statistics
Matches: 101, Mismatches: 24, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
28 12 0.12
29 40 0.40
30 42 0.42
31 7 0.07
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (30 bp):
CAAAAATGTAATTTTTAGGAAATTCGGGGG
Found at i:3649940 original size:14 final size:14
Alignment explanation
Indices: 3649902--3649944 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
3649892 CAATTTGTAA
*
3649902 TTGGACCTTTGTAT
1 TTGGACCTTTATAT
* *
3649916 TGGGACTTTTATAT
1 TTGGACCTTTATAT
3649930 TTGGACCTTTA-AT
1 TTGGACCTTTATAT
3649943 TT
1 TT
3649945 TATTTTAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.51
Consensus pattern (14 bp):
TTGGACCTTTATAT
Found at i:3649971 original size:17 final size:17
Alignment explanation
Indices: 3649946--3650016 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 17
3649936 CTTTAATTTT
*
3649946 ATTTTAATTTAAAATAA
1 ATTTAAATTTAAAATAA
*
3649963 ATTTAAATTTAAAGTAA
1 ATTTAAATTTAAAATAA
* * * *
3649980 ATTCAAACTCAAAATGA
1 ATTTAAATTTAAAATAA
*
3649997 ATTTGAATTTAAAATAA
1 ATTTAAATTTAAAATAA
3650014 ATT
1 ATT
3650017 CAAACTTATT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:3649994 original size:34 final size:34
Alignment explanation
Indices: 3649956--3650022 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
3649946 ATTTTAATTT
*
3649956 AAAATAAATTTAAATTTAAAGTAAATTCAAACTC
1 AAAATAAATTTAAATTTAAAATAAATTCAAACTC
* *
3649990 AAAATGAATTTGAATTTAAAATAAATTCAAACT
1 AAAATAAATTTAAATTTAAAATAAATTCAAACT
3650023 TATTTAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.33
Consensus pattern (34 bp):
AAAATAAATTTAAATTTAAAATAAATTCAAACTC
Found at i:3650586 original size:78 final size:78
Alignment explanation
Indices: 3650455--3650625 Score: 216
Period size: 78 Copynumber: 2.2 Consensus size: 78
3650445 TACAATCTGG
* * * * * *
3650455 CCCAGGCTCGAGGTAGGAGATTGGTTGATGGTGATCTGCCCCAAGCTCAGGGTAAGAGATCGAAT
1 CCCAAGCTCAAGGTAGGAGATTGGTTGACGATGATCTGCCCCAAGCTCAGGGTAAAAGATCAAAT
*
3650520 GGCTGTAATCTAC
66 GGCTGCAATCTAC
* * * * * **
3650533 CCCTAGCTCAGGGTAGGAGATTTGTTGACGATGATCTGTCCCAGGCTTGGGGTAAAAGATCAAAT
1 CCCAAGCTCAAGGTAGGAGATTGGTTGACGATGATCTGCCCCAAGCTCAGGGTAAAAGATCAAAT
3650598 GGCTGCAATCTAC
66 GGCTGCAATCTAC
3650611 CCCAAGCTCAAGGTA
1 CCCAAGCTCAAGGTA
3650626 AAAGATCAAA
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (78 bp):
CCCAAGCTCAAGGTAGGAGATTGGTTGACGATGATCTGCCCCAAGCTCAGGGTAAAAGATCAAAT
GGCTGCAATCTAC
Found at i:3650648 original size:78 final size:77
Alignment explanation
Indices: 3650566--3650829 Score: 259
Period size: 78 Copynumber: 3.4 Consensus size: 77
3650556 GTTGACGATG
* *
3650566 ATCTGTCCCAGGCTTGGGGTAAAAGATCAAATGGCTG-C-A-ATCTACCCCAAGCTCAAGG-TAA
1 ATCTGTCCCAGGCTCGGGGTAAGAGAT----TGGCTGACGAGATCTACCCCAAGCTC-AGGATAA
*
3650627 AAGATCAAATGGCTTCA
61 AAGATCAAATGGCTGCA
* * * * *
3650644 ATCTGTCCCAAGCTCGGGGTAAGAGATTGGTTGACGATGATCTGCCCCAAGCTCGGGATAAAATA
1 ATCTGTCCCAGGCTCGGGGTAAGAGATTGGCTGACGA-GATCTACCCCAAGCTCAGGATAAAAGA
3650709 TCAAATGGCTGCA
65 TCAAATGGCTGCA
* * * * *
3650722 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGACGATGATCTGCCCCAGGCT-AGGGGTAAAAG
1 ATCTGTCCCAGGCTCGGGGTAAGAGATTGGCTGACGA-GATCTACCCCAAGCTCA-GGATAAAAG
3650786 ATCAAATGGCTGCA
64 ATCAAATGGCTGCA
* * * **
3650800 TTTTGCCCCAGGCTTAGGGTAAGAGATTGG
1 ATCTGTCCCAGGCTCGGGGTAAGAGATTGG
3650830 TTTATGATGT
Statistics
Matches: 162, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
74 5 0.03
75 1 0.01
76 1 0.01
77 2 0.01
78 153 0.94
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (77 bp):
ATCTGTCCCAGGCTCGGGGTAAGAGATTGGCTGACGAGATCTACCCCAAGCTCAGGATAAAAGAT
CAAATGGCTGCA
Found at i:3650665 original size:39 final size:39
Alignment explanation
Indices: 3650566--3650809 Score: 189
Period size: 39 Copynumber: 6.3 Consensus size: 39
3650556 GTTGACGATG
* * *
3650566 ATCTGTCCCAGGCTTGGGGTAAAAGATCAAATGGCTGCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCA
* ** *
3650605 ATCTACCCCAAGCTCAAGGTAAAAGATCAAATGGCTTCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCA
* * *
3650644 ATCTGTCCCAAGCTCGGGGTAAGAGAT----TGGTTGACGA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTG-C-A
* *
3650681 TGATCTGCCCCAAGCTCGGGATAAAATATCAAATGGCTGCA
1 --ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCA
* * *
3650722 ATCTGCCCCAGGCTCGGGGTAAGAGAT----TGGTTGACGA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTG-C-A
* *
3650759 TGATCTGCCCCAGGCTAGGGGTAAAAGATCAAATGGCTGCA
1 --ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCA
* *
3650800 TTTTGCCCCA
1 ATCTGCCCCA
3650810 GGCTTAGGGT
Statistics
Matches: 160, Mismatches: 29, Indels: 32
0.72 0.13 0.14
Matches are distributed among these distances:
35 9 0.06
36 2 0.01
37 2 0.01
39 133 0.83
41 2 0.01
42 2 0.01
43 10 0.06
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCA
Found at i:3650743 original size:117 final size:117
Alignment explanation
Indices: 3650488--3650748 Score: 353
Period size: 117 Copynumber: 2.2 Consensus size: 117
3650478 GTTGATGGTG
* * *
3650488 ATCTGCCCCAAGCTCAGGGTAAGAGATCGAATGGCTGTAATCTACCCCTAGCTCAGGGTAGGAGA
1 ATCTGCCCCAAGCTCAGGGTAAGAGATCAAATGGCTGTAATCTACCCCAAGCTCAGGGTAAGAGA
* * * * *
3650553 TTTGTTGACGATGATCTGTCCCAGGCTTGGGGTAAAAGATCAAATGGCTGCA
66 TTGGTTGACGATGATCTGCCCCAAGCTCGGGATAAAAGATCAAATGGCTGCA
* * * ** *
3650605 ATCTACCCCAAGCTCAAGGTAAAAGATCAAATGGCT-TCAATCTGTCCCAAGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCAGGGTAAGAGATCAAATGGCTGT-AATCTACCCCAAGCTCAGGGTAAGAG
*
3650669 ATTGGTTGACGATGATCTGCCCCAAGCTCGGGATAAAATATCAAATGGCTGCA
65 ATTGGTTGACGATGATCTGCCCCAAGCTCGGGATAAAAGATCAAATGGCTGCA
* *
3650722 ATCTGCCCCAGGCTCGGGGTAAGAGAT
1 ATCTGCCCCAAGCTCAGGGTAAGAGAT
3650749 TGGTTGACGA
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
116 1 0.01
117 122 0.99
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (117 bp):
ATCTGCCCCAAGCTCAGGGTAAGAGATCAAATGGCTGTAATCTACCCCAAGCTCAGGGTAAGAGA
TTGGTTGACGATGATCTGCCCCAAGCTCGGGATAAAAGATCAAATGGCTGCA
Found at i:3650830 original size:78 final size:78
Alignment explanation
Indices: 3650605--3650831 Score: 321
Period size: 78 Copynumber: 2.9 Consensus size: 78
3650595 AATGGCTGCA
* * * * *
3650605 ATCTACCCCAAGCTCA-AGGTAAAAGATCAAATGGCTTCAATCTGTCCCAAGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCT-AGGGGTAAAAGATCAAATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAG
3650669 ATTGGTTGACGATG
65 ATTGGTTGACGATG
* * *
3650683 ATCTGCCCCAAGCTCGGGATAAAATATCAAATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGA
1 ATCTGCCCCAAGCTAGGGGTAAAAGATCAAATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGA
3650748 TTGGTTGACGATG
66 TTGGTTGACGATG
* * * **
3650761 ATCTGCCCCAGGCTAGGGGTAAAAGATCAAATGGCTGCATTTTGCCCCAGGCTTAGGGTAAGAGA
1 ATCTGCCCCAAGCTAGGGGTAAAAGATCAAATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGA
3650826 TTGGTT
66 TTGGTT
3650832 TATGATGTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 132 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (78 bp):
ATCTGCCCCAAGCTAGGGGTAAAAGATCAAATGGCTGCAATCTGCCCCAGGCTCGGGGTAAGAGA
TTGGTTGACGATG
Found at i:3651094 original size:101 final size:101
Alignment explanation
Indices: 3650893--3651087 Score: 291
Period size: 101 Copynumber: 1.9 Consensus size: 101
3650883 GCTGCTGTAG
* * * * * * *
3650893 TTTTAATCCAACTTTGCTGCAACTTCAGGAATATAGGATTTGATGTTGAAGCTTTATCTTGCTCT
1 TTTTAATCCAACTTTACTGCAACTTCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
* *
3650958 TACTACAACTTCAGAGAGATAAAGACTTGCTATTGT
66 TACTACAACGTCAAAGAGATAAAGACTTGCTATTGT
*
3650994 TTTTAATCCAACTTTACTGCAACTTCAAGAGGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
1 TTTTAATCCAACTTTACTGCAACTTCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
*
3651059 TACTGCAACGTCAAAGAGATAAAGACTTG
66 TACTACAACGTCAAAGAGATAAAGACTTG
3651088 TCATTGTAGT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 83 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (101 bp):
TTTTAATCCAACTTTACTGCAACTTCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
TACTACAACGTCAAAGAGATAAAGACTTGCTATTGT
Found at i:3651228 original size:49 final size:49
Alignment explanation
Indices: 3651173--3651650 Score: 359
Period size: 48 Copynumber: 9.8 Consensus size: 49
3651163 ATGTTTCTAA
* * * * **
3651173 GGTACTGGGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * *
3651222 GGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTTATGTC-TC-T
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * * ** * * *
3651269 AAGGTACAAGG-TTCACCGTTATGACTGAAACCTTT-CCTTCTGTGTCTTCGT
1 --GGTAC-TGGATCCGCCGTTGCGACTTAAATCTTTCCCTTC-ATGTCTTCGT
* * * *
3651320 GGTACTGGATCCGCCGTTACGGCTTAGA--TTTCCCTTCATGTC-TCTGG
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GT
* * * * * *
3651367 GGTATTAGG-TTCGCCATTGTGACTTAAACCTTTCCCTT-GTGTCTTCGT
1 GGTACT-GGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * *
3651415 GGTATTGGATCCGCCGTTGCGACTTAGATCTTTCCCTT-GTGTCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * *
3651463 GGTACTGGATCCACCGTTGCGGCTTAGATCTTTCCCTTCATGTCTCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATG--TCTTCGT
* * * * * *
3651514 GGTACTAGATCCACCGTTGCGGCTTAGATCTTTCCCTT-GTGTCTTCAT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * * * *
3651562 GGTACTGGATCCGCCATTGCGGCTTAGATCTTTCCCTTCATGTCTTTGG
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
* * * *
3651611 GGTATTAGG-TTCGCCATTGCGACTTAAACCTTTCCCTTCA
1 GGTACT-GGATCCGCCGTTGCGACTTAAATCTTTCCCTTCA
3651651 AATCTTCATG
Statistics
Matches: 352, Mismatches: 58, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
46 2 0.01
47 29 0.08
48 136 0.39
49 132 0.38
50 8 0.02
51 45 0.13
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (49 bp):
GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT
Found at i:3651420 original size:48 final size:48
Alignment explanation
Indices: 3651173--3651648 Score: 329
Period size: 49 Copynumber: 9.8 Consensus size: 48
3651163 ATGTTTCTAA
* * * * ***
3651173 GGTACTGGGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTT-GTGTCTTCGT
* * *
3651222 GGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTTATGTC-TC-T
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCC-TTGTGTCTTCGT
* * * ** * * *
3651269 AAGGTACAAGG-TTCACCGTTATGACTGAAACCTTTCCTTCTGTGTCTTCGT
1 --GGTAC-TGGATCCGCCGTTGCGACTTAAATCTTTCCCT-TGTGTCTTCGT
* * * * *
3651320 GGTACTGGATCCGCCGTTACGGCTTAGA--TTTCCCTTCATGTC-TCTGG
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTT-GTGTCTTC-GT
* * * * *
3651367 GGTATTAGG-TTCGCCATTGTGACTTAAACCTTTCCCTTGTGTCTTCGT
1 GGTACT-GGATCCGCCGTTGCGACTTAAATCTTTCCCTTGTGTCTTCGT
* *
3651415 GGTATTGGATCCGCCGTTGCGACTTAGATCTTTCCCTTGTGTCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTGTGTCTTCGT
* * * *
3651463 GGTACTGGATCCACCGTTGCGGCTTAGATCTTTCCCTTCATGTCTCTTCGT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCC-T--TGTGTCTTCGT
* * * * *
3651514 GGTACTAGATCCACCGTTGCGGCTTAGATCTTTCCCTTGTGTCTTCAT
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTGTGTCTTCGT
* * * * * *
3651562 GGTACTGGATCCGCCATTGCGGCTTAGATCTTTCCCTTCATGTCTTTGG
1 GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTT-GTGTCTTCGT
* * * *
3651611 GGTATTAGG-TTCGCCATTGCGACTTAAACCTTTCCCTT
1 GGTACT-GGATCCGCCGTTGCGACTTAAATCTTTCCCTT
3651649 CAAATCTTCA
Statistics
Matches: 349, Mismatches: 58, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
46 3 0.01
47 32 0.09
48 129 0.37
49 130 0.37
50 9 0.03
51 46 0.13
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (48 bp):
GGTACTGGATCCGCCGTTGCGACTTAAATCTTTCCCTTGTGTCTTCGT
Found at i:3651513 original size:194 final size:194
Alignment explanation
Indices: 3651180--3651551 Score: 457
Period size: 194 Copynumber: 1.9 Consensus size: 194
3651170 TAAGGTACTG
* *
3651180 GGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATTCGCCGTTGCGGC
1 GGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGAC
* *
3651245 TTAAATCTTTCCCTTTATGTCTCTAAGGTACAAGGTTCACCGTTATGACTGAAACCTTTCCTTCT
66 TTAAATCTTTCCCTTTATGTCTCT-AGGTACAAGGTCCACCGTTACGACTGAAACCTTTCCTTCT
* * *
3651310 GTGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGA-TTTCCCTTCATGTCTCTGGGGTATTA
130 GTCTCTTCGTGGTACTAGATCCACCGTTACGGCTTAGACTTTCCCTTCATGTCTCTGGGGTATTA
* *** *
3651374 GGTTCGCCATTGTGACTTAAACCTTTCCCTT-GTGTCTTCGTGGTATTGGATCCGCCGTTGCGAC
1 GGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGAC
* * * * * * * *
3651438 TTAGATCTTTCCC-TTGTGTCTTCGT-GGTAC-TGGATCCACCGTTGCGGCTTAGATCTTTCCCT
66 TTAAATCTTTCCCTTTATGTC-TC-TAGGTACAAGG-TCCACCGTTACGACTGAAACCTTT-CCT
*
3651500 TCATGTCTCTTCGTGGTACTAGATCCACCGTTGCGGCTTAGATCTTTCCCTT
127 TC-TGTCTCTTCGTGGTACTAGATCCACCGTTACGGCTTAGA-CTTTCCCTT
3651552 GTGTCTTCAT
Statistics
Matches: 150, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
191 2 0.01
192 28 0.19
193 46 0.31
194 66 0.44
196 8 0.05
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.37
Consensus pattern (194 bp):
GGTTCGCCATTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATCCGCCGTTGCGAC
TTAAATCTTTCCCTTTATGTCTCTAGGTACAAGGTCCACCGTTACGACTGAAACCTTTCCTTCTG
TCTCTTCGTGGTACTAGATCCACCGTTACGGCTTAGACTTTCCCTTCATGTCTCTGGGGTATTA
Found at i:3651531 original size:99 final size:99
Alignment explanation
Indices: 3651408--3651606 Score: 335
Period size: 99 Copynumber: 2.0 Consensus size: 99
3651398 TTCCCTTGTG
* * * *
3651408 TCTTCGTGGTATTGGATCCGCCGTTGCGACTTAGATCTTTCCCTTGTGTCTTCGTGGTACTGGAT
1 TCTTCGTGGTACTAGATCCACCGTTGCGACTTAGATCTTTCCCTTGTGTCTTCATGGTACTGGAT
*
3651473 CCACCGTTGCGGCTTAGATCTTTCCCTTCATGTC
66 CCACCATTGCGGCTTAGATCTTTCCCTTCATGTC
*
3651507 TCTTCGTGGTACTAGATCCACCGTTGCGGCTTAGATCTTTCCCTTGTGTCTTCATGGTACTGGAT
1 TCTTCGTGGTACTAGATCCACCGTTGCGACTTAGATCTTTCCCTTGTGTCTTCATGGTACTGGAT
*
3651572 CCGCCATTGCGGCTTAGATCTTTCCCTTCATGTC
66 CCACCATTGCGGCTTAGATCTTTCCCTTCATGTC
3651606 T
1 T
3651607 TTGGGGTATT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 93 1.00
ACGTcount: A:0.12, C:0.28, G:0.22, T:0.38
Consensus pattern (99 bp):
TCTTCGTGGTACTAGATCCACCGTTGCGACTTAGATCTTTCCCTTGTGTCTTCATGGTACTGGAT
CCACCATTGCGGCTTAGATCTTTCCCTTCATGTC
Found at i:3651588 original size:147 final size:143
Alignment explanation
Indices: 3651300--3651599 Score: 402
Period size: 147 Copynumber: 2.1 Consensus size: 143
3651290 TGACTGAAAC
* *
3651300 CTTTCCTTCTGTGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGATTTCCCTTCATGTCTCT
1 CTTTCCCT-TGTGTCTTCGTGGTACTGGATCCACCGTTACGGCTTAGATTTCCCTTCATGTCTCT
* * * * * * *
3651365 GGGGTATTAGGTTCGCCATTGTGACTTAAACCTTTCCCTTGTGTCTTCGTGGTATTGGATCCGCC
65 GGGGTACTAGATCCACCATTGCGACTTAAACCTTTCCCTTGTGTCTTCATGGTACTGGATCCGCC
*
3651430 GTTGCGACTTAGAT
130 ATTGCGACTTAGAT
*
3651444 CTTTCCCTTGTGTCTTCGTGGTACTGGATCCACCGTTGCGGCTTAGATCTTTCCCTTCATGTCTC
1 CTTTCCCTTGTGTCTTCGTGGTACTGGATCCACCGTTACGGCTTAGA--TTTCCCTTCATGTCTC
* * * * *
3651509 TTCGTGGTACTAGATCCACCGTTGCGGCTTAGATCTTTCCCTTGTGTCTTCATGGTACTGGATCC
64 -T-GGGGTACTAGATCCACCATTGCGACTTAAACCTTTCCCTTGTGTCTTCATGGTACTGGATCC
*
3651574 GCCATTGCGGCTTAGAT
127 GCCATTGCGACTTAGAT
3651591 CTTTCCCTT
1 CTTTCCCTT
3651600 CATGTCTTTG
Statistics
Matches: 135, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
143 37 0.27
144 7 0.05
145 16 0.12
146 1 0.01
147 74 0.55
ACGTcount: A:0.12, C:0.27, G:0.22, T:0.39
Consensus pattern (143 bp):
CTTTCCCTTGTGTCTTCGTGGTACTGGATCCACCGTTACGGCTTAGATTTCCCTTCATGTCTCTG
GGGTACTAGATCCACCATTGCGACTTAAACCTTTCCCTTGTGTCTTCATGGTACTGGATCCGCCA
TTGCGACTTAGAT
Found at i:3653553 original size:13 final size:13
Alignment explanation
Indices: 3653535--3653561 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3653525 TTTTCTCTTT
3653535 TTTATTTTTTTTA
1 TTTATTTTTTTTA
3653548 TTTATTTTTTTTA
1 TTTATTTTTTTTA
3653561 T
1 T
3653562 AACACGTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTTTTTA
Found at i:3658007 original size:29 final size:29
Alignment explanation
Indices: 3657975--3658224 Score: 160
Period size: 29 Copynumber: 8.5 Consensus size: 29
3657965 CTTTAGGGGC
*
3657975 AAAATGATAATTTTTGGACACTCGAGGGT
1 AAAATGATAATTTTTGGACATTCGAGGGT
*
3658004 AAAAAT-ATAATTTTTGGATATTC-AGGGGT
1 -AAAATGATAATTTTTGGACATTCGA-GGGT
* **
3658033 AAAATGGTAATTTTTAGGAGTTTCGA-GGT
1 AAAATGATAATTTTT-GGACATTCGAGGGT
* * *
3658062 CAAAAATG-GAATTTTTGGACATCCGGGGGT
1 --AAAATGATAATTTTTGGACATTCGAGGGT
* * *
3658092 AAAATGGTAATTTTTGGA-AGTTTTGAGGTT
1 AAAATGATAATTTTTGGACA--TTCGAGGGT
*
3658122 AAAAATGA-AATTTTTGGACATTCAAGGGT
1 -AAAATGATAATTTTTGGACATTCGAGGGT
* * **
3658151 AAAATGGTAATTTTTAGA-ATTTTAGGGGT
1 AAAATGATAATTTTTGGACATTCGA-GGGT
3658180 AAAAATG-TAATTTTTGTGA-AGTTCGAGGGTT
1 -AAAATGATAATTTTTG-GACA-TTCGAGGG-T
*
3658211 AAAATG-CAATTTTT
1 AAAATGATAATTTTT
3658225 AAAAACTTTA
Statistics
Matches: 175, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
28 23 0.13
29 73 0.42
30 61 0.35
31 18 0.10
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (29 bp):
AAAATGATAATTTTTGGACATTCGAGGGT
Found at i:3658068 original size:59 final size:58
Alignment explanation
Indices: 3657956--3658225 Score: 244
Period size: 59 Copynumber: 4.6 Consensus size: 58
3657946 AAAACGGTAA
* * * ***
3657956 TTTTGGACACTTTAGGGGCAAAATGATAATTTTT-GGACACTCGAGGGTAAAAATATAAT
1 TTTTGGACA-TTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCGA-GGTAAAAATATAAT
* **
3658015 TTTTGGATATTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCGAGGTCAAAAATGGAAT
1 TTTTGGACATTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCGAGGT-AAAAATATAAT
* * *
3658074 TTTTGGACATCCGGGGGTAAAATGGTAATTTTT-GGAAGTTTTGAGGTTAAAAATGA-AAT
1 TTTTGGACATTCAGGGGTAAAATGGTAATTTTTAGG-AGTTTCGAGG-TAAAAAT-ATAAT
* * * * * *
3658133 TTTTGGACATTCAAGGGTAAAATGGTAATTTTTAGAATTTTAGGGGTAAAAATGTAAT
1 TTTTGGACATTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCGAGGTAAAAATATAAT
* *
3658191 TTTTGTGA-AGTTCGAGGGTTAAAAT-GCAATTTTTA
1 TTTTG-GACA-TTC-AGGGGTAAAATGGTAATTTTTA
3658226 AAAACTTTAG
Statistics
Matches: 176, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
58 42 0.24
59 123 0.70
60 11 0.06
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (58 bp):
TTTTGGACATTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCGAGGTAAAAATATAAT
Found at i:3658239 original size:60 final size:58
Alignment explanation
Indices: 3658000--3658257 Score: 205
Period size: 59 Copynumber: 4.4 Consensus size: 58
3657990 GGACACTCGA
* * * * ** * *
3658000 GGGTAAAAATATAATTTTTGGATATTCAGGGGTAAAATGGTAATTTTTAGGAGTTTCG
1 GGGTAAAAATGTAATTTTTGGACATTCAAGGGTAAAATGGCAATTTTTAAAACTTTAG
* * * ** * ** * *
3658058 AGGTCAAAAATGGAATTTTTGGACATCCGGGGGTAAAATGGTAATTTTTGGAAGTTTTG
1 GGGT-AAAAATGTAATTTTTGGACATTCAAGGGTAAAATGGCAATTTTTAAAACTTTAG
* * * * *
3658117 AGGTTAAAAATGAAATTTTTGGACATTCAAGGGTAAAATGGTAATTTTTAGAATTTTAG
1 -GGGTAAAAATGTAATTTTTGGACATTCAAGGGTAAAATGGCAATTTTTAAAACTTTAG
*
3658176 GGGTAAAAATGTAATTTTTGTGA-AGTTCGAGGGTTAAAAT-GCAATTTTTAAAAACTTTAG
1 GGGTAAAAATGTAATTTTTG-GACA-TTCAAGGG-TAAAATGGCAATTTTT-AAAACTTTAG
* * *
3658236 GGGTCAAAATATGATTTTTGGA
1 GGGTAAAAATGTAATTTTTGGA
3658258 TAGTTTAGGG
Statistics
Matches: 167, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
58 22 0.13
59 112 0.67
60 33 0.20
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (58 bp):
GGGTAAAAATGTAATTTTTGGACATTCAAGGGTAAAATGGCAATTTTTAAAACTTTAG
Found at i:3660136 original size:17 final size:17
Alignment explanation
Indices: 3660116--3660165 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
3660106 ATTTTAATTT
3660116 AAAATAAATTTAAACTC
1 AAAATAAATTTAAACTC
* * * *
3660133 AAAATGAATTTGAATTT
1 AAAATAAATTTAAACTC
*
3660150 AAAATAAATTCAAACT
1 AAAATAAATTTAAACT
3660166 TATTTAAAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (17 bp):
AAAATAAATTTAAACTC
Found at i:3664080 original size:23 final size:21
Alignment explanation
Indices: 3664053--3664103 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
3664043 TATATGGATT
*
3664053 AATTATA-TGTATTAATTAAAA
1 AATTATATTGAATT-ATTAAAA
3664074 TATATTATATTGAATTATTAAAA
1 -A-ATTATATTGAATTATTAAAA
3664097 AATTATA
1 AATTATA
3664104 AATTTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.23
22 2 0.08
23 13 0.50
24 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (21 bp):
AATTATATTGAATTATTAAAA
Found at i:3665306 original size:18 final size:18
Alignment explanation
Indices: 3665283--3665317 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3665273 AAATTTTCGA
*
3665283 ATTCGAATAACTCGAATG
1 ATTCGAATAAATCGAATG
3665301 ATTCGAATAAATCGAAT
1 ATTCGAATAAATCGAAT
3665318 AAAACTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (18 bp):
ATTCGAATAAATCGAATG
Found at i:3665555 original size:44 final size:43
Alignment explanation
Indices: 3665489--3665571 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 43
3665479 TACCTTACCC
3665489 AAATATAATTTCGTTCTT-AAAAAAAACTCATAAACTAAACCTA
1 AAATATAATTTCGTTCTTAAAAAAAAACTC-TAAACTAAACCTA
*
3665532 AAAT-TAATTTTCTGTTCTTAAAAAAAAACTCTAAATTAAA
1 AAATATAA-TTTC-GTTCTTAAAAAAAAACTCTAAACTAAA
3665572 TAAAAATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
42 3 0.08
43 8 0.22
44 14 0.39
45 11 0.31
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (43 bp):
AAATATAATTTCGTTCTTAAAAAAAAACTCTAAACTAAACCTA
Found at i:3667123 original size:29 final size:28
Alignment explanation
Indices: 3667092--3667196 Score: 99
Period size: 28 Copynumber: 3.7 Consensus size: 28
3667082 TTCGAGATCA
*
3667092 AAAATGG-AGTTTTTGGAAGTTCAAGGGT
1 AAAATGGCAATTTTTGGAAGTTC-AGGGT
**
3667120 AAAATGGCAA-TTTTGGAAAAATCAGGGT
1 AAAATGGCAATTTTTGG-AAGTTCAGGGT
*
3667148 CAAAAATGG-AATTTTTGGAAGTTTGAGGGT
1 --AAAATGGCAATTTTTGGAAG-TTCAGGGT
*
3667178 AAAATGGTAATTTTTGGAA
1 AAAATGGCAATTTTTGGAA
3667197 AGATCGGGTG
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
28 25 0.39
29 20 0.31
30 19 0.30
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.31
Consensus pattern (28 bp):
AAAATGGCAATTTTTGGAAGTTCAGGGT
Found at i:3667133 original size:28 final size:27
Alignment explanation
Indices: 3667092--3667404 Score: 144
Period size: 30 Copynumber: 10.6 Consensus size: 27
3667082 TTCGAGATCA
*
3667092 AAAATGGAGTTTTTGGAAGTTCAAGGGT
1 AAAATGGAATTTTTGGAAGTTC-AGGGT
**
3667120 AAAATGGCAA-TTTTGGAAAAATCAGGGT
1 AAAATGG-AATTTTTGG-AAGTTCAGGGT
*
3667148 CAAAAATGGAATTTTTGGAAGTTTGAGGGT
1 --AAAATGGAATTTTTGGAAG-TTCAGGGT
* *
3667178 AAAATGGTAATTTTTGGAAAGATCGGGTGT
1 AAAATGG-AATTTTTGG-AAGTTCAGG-GT
* **
3667208 CAAAATGTAATTTTTGGAAAGTTTGGGGGTT
1 -AAAATGGAATTTTTGG-AAG-TTCAGGG-T
*
3667239 AAAATGTG-ATTTTTGGAAAGTTTGAGGGTT
1 AAAATG-GAATTTTTGG-AAG-TTCAGGG-T
* * * *
3667269 AAAATGTAATTTTTAGAAAGTTTAGGTTT
1 AAAATGGAATTTTT-GGAAGTTCAGG-GT
* * ** *
3667298 CAAATGTAATTTTTAAAAAGATCGAGGGT
1 AAAATGGAATTTTT-GGAAGTTC-AGGGT
* * *
3667327 CAAAATGTAATTTTTGGAAAGTTTGAGCGT
1 -AAAATGGAATTTTTGG-AAG-TTCAGGGT
*
3667357 CAAAATGTAATTTTTGGAAAGTTCGAGGGT
1 -AAAATGGAATTTTTGG-AAGTTC-AGGGT
*
3667387 CAAAATGTAATTTTTGGA
1 -AAAATGGAATTTTTGGA
3667405 CAAATTAGGG
Statistics
Matches: 233, Mismatches: 31, Indels: 41
0.76 0.10 0.13
Matches are distributed among these distances:
28 25 0.11
29 50 0.21
30 145 0.62
31 13 0.06
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (27 bp):
AAAATGGAATTTTTGGAAGTTCAGGGT
Found at i:3667156 original size:58 final size:60
Alignment explanation
Indices: 3667089--3667226 Score: 192
Period size: 58 Copynumber: 2.4 Consensus size: 60
3667079 AAGTTCGAGA
*
3667089 TCAAAAATGGAGTTTTTGGAAGTTCAAGGGTAAAATGGCAA-TTTTGGAAAAATCAGG-G
1 TCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGCAATTTTTGGAAAAATCAGGTG
** * * *
3667147 TCAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTTGGAAAGATCGGGTG
1 TCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGCAATTTTTGGAAAAATCAGGTG
*
3667207 TC-AAAATGTAATTTTTGGAA
1 TCAAAAATGGAATTTTTGGAA
3667227 AGTTTGGGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
58 37 0.52
59 31 0.44
60 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (60 bp):
TCAAAAATGGAATTTTTGGAAGTTCAAGGGTAAAATGGCAATTTTTGGAAAAATCAGGTG
Found at i:3667177 original size:30 final size:29
Alignment explanation
Indices: 3667143--3667404 Score: 262
Period size: 30 Copynumber: 8.8 Consensus size: 29
3667133 TGGAAAAATC
*
3667143 AGGGTCAAAAATGGAATTTTTGGAAGTTTG
1 AGGGTC-AAAATGTAATTTTTGGAAGTTTG
* *
3667173 AGGGT-AAAATGGTAATTTTTGGAAAGATCG
1 AGGGTCAAAAT-GTAATTTTTGG-AAGTTTG
3667203 -GGTGTCAAAATGTAATTTTTGGAAAGTTTG
1 AGG-GTCAAAATGTAATTTTTGG-AAGTTTG
* * *
3667233 GGGGTTAAAATGTGATTTTTGGAAAGTTTG
1 AGGGTCAAAATGTAATTTTTGG-AAGTTTG
* *
3667263 AGGGTTAAAATGTAATTTTTAGAAAGTTT-
1 AGGGTCAAAATGTAATTTTT-GGAAGTTTG
* ** * *
3667292 AGGTTTC-AAATGTAATTTTTAAAAAGATCG
1 AGG-GTCAAAATGTAATTTTT-GGAAGTTTG
3667322 AGGGTCAAAATGTAATTTTTGGAAAGTTTG
1 AGGGTCAAAATGTAATTTTTGG-AAGTTTG
* *
3667352 AGCGTCAAAATGTAATTTTTGGAAAGTTCG
1 AGGGTCAAAATGTAATTTTTGG-AAGTTTG
3667382 AGGGTCAAAATGTAATTTTTGGA
1 AGGGTCAAAATGTAATTTTTGGA
3667405 CAAATTAGGG
Statistics
Matches: 199, Mismatches: 23, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
28 5 0.03
29 37 0.19
30 149 0.75
31 8 0.04
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (29 bp):
AGGGTCAAAATGTAATTTTTGGAAGTTTG
Found at i:3667251 original size:60 final size:60
Alignment explanation
Indices: 3667092--3667404 Score: 354
Period size: 60 Copynumber: 5.3 Consensus size: 60
3667082 TTCGAGATCA
* * ** * *
3667092 AAAATGGAGTTTTTGG-AAGTTCAAGGG-TAAAATGGCAA-TTTTGGAAAAATC-AGGGTC
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAAT-GTAATTTTTGGAAAGATCGAGGGTC
*
3667149 AAAAATGGAATTTTTGG-AAGTTTGAGGG-TAAAATGGTAATTTTTGGAAAGATCG-GGTGTC
1 -AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAAT-GTAATTTTTGGAAAGATCGAGG-GTC
* * * * *
3667209 AAAATGTAATTTTTGGAAAGTTTGGGGGTTAAAATGTGATTTTTGGAAAGTTTGAGGGTT
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGATCGAGGGTC
* * * **
3667269 AAAATGTAATTTTTAGAAAGTTT-AGGTTTCAAATGTAATTTTTAAAAAGATCGAGGGTC
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGATCGAGGGTC
* * *
3667328 AAAATGTAATTTTTGGAAAGTTTGAGCGTCAAAATGTAATTTTTGGAAAGTTCGAGGGTC
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGATCGAGGGTC
3667388 AAAATGTAATTTTTGGA
1 AAAATGTAATTTTTGGA
3667405 CAAATTAGGG
Statistics
Matches: 219, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
58 34 0.16
59 78 0.36
60 99 0.45
61 8 0.04
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (60 bp):
AAAATGTAATTTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGATCGAGGGTC
Found at i:3667280 original size:119 final size:118
Alignment explanation
Indices: 3667130--3667404 Score: 358
Period size: 119 Copynumber: 2.3 Consensus size: 118
3667120 AAAATGGCAA
** *
3667130 TTTTGGAAAAATC-AGGGTCAAAAATGGAATTTTTGGAAGTTTGAGG-GTAAAATGGTAATTTTT
1 TTTTGGAAAGTTCGAGGGTC-AAAATGTAATTTTTGGAAGTTT-AGGTGTAAAAT-GTAATTTTT
** * * * *
3667193 GGAAAGATCG-GGTGTCAAAATGTAATTTTTGGAAAGTTTGGGGGTTAAAATGTGAT
63 AAAAAGATCGAGG-GTCAAAATGTAATTTTTGGAAAGTTTGAGCGTCAAAATGTAAT
* * * * *
3667249 TTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTAGAAAGTTTAGGTTTCAAATGTAATTTTTAA
1 TTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTT-GGAAGTTTAGGTGTAAAATGTAATTTTTAA
3667314 AAAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCGTCAAAATGTAAT
65 AAAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCGTCAAAATGTAAT
3667368 TTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTTGGA
1 TTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTTGGA
3667405 CAAATTAGGG
Statistics
Matches: 135, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
118 2 0.01
119 114 0.84
120 19 0.14
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.36
Consensus pattern (118 bp):
TTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTTGGAAGTTTAGGTGTAAAATGTAATTTTTAAA
AAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCGTCAAAATGTAAT
Found at i:3669496 original size:49 final size:49
Alignment explanation
Indices: 3669431--3671027 Score: 1311
Period size: 49 Copynumber: 32.6 Consensus size: 49
3669421 AGGTATAAGG
* * * *
3669431 TTCGCCATTGCAACTTAAACCTTTCCCCTT-ATCTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTT-CCCTTCATGTCTTCGTGGTACTGGA
* *
3669480 TTCGTCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTACTAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT-GGA
* * * *
3669529 TTCGCCATTGCAACTTAAACCTTTCCCTT-GTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* *
3669577 TTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* *
3669626 TTCGCCGTTGCTG-CTTAAATCTTTCCCTTCATGTC-TCTGAGGTA-TAAGA
1 TTCGCCGTTGC-GACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT-GGA
* ** *
3669675 TTCGCCATTGCGACTTAAA-CATTTCCCTTTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATC-TTTCCCTTCATGTCTTCGTGGTACTGGA
* *
3669724 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-CTTC-TAAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGT--GGTAC-TGGA
* * * *
3669773 TTCGCCGTTGCGACTTAAACCTTTCCCTCCATATCTTTGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
** *
3669822 TTTACCGTTGC-AGCTTAAATCTTTCCCTTCATGTC-TCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT--GGA
* * * ** *
3669871 TTTGCCATTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * *
3669920 TTCGCCGTTGTGGCTTAAATCTTTCCCTTCATG-CTTCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT--GGA
* * * * * **
3669969 TTCACCGTTGCAACTTAAACCTTTCCCTTCATATCTTCGTGGAACTAAA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * *
3670018 TTCGTCGTTGCGGCTTAAATCTTTCCCTTCATGTC-TCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT--GGA
** * * * * *
3670067 TTCGCATTTACGACGTAAACCTTTCCC-TCTGTGTCTTCTTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTC-ATGTCTTCGTGGTACTGGA
* * * * *
3670116 TTCACCATTGCGGCTTAAATCTTTCCCTTCATGTCTTCCTGGTAATGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * * *
3670165 TTCGTCGTTGCGGCTTAAATCTTTCCCTTTATGTC-TCTGAGGTACTAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT-GGA
* * * * * * *
3670214 TTCGCCATTGCGACTTTAACCTTTCGCTT-GTGTCTTTGTGGTACTGAA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * * *
3670262 TTCGCCGTTACGGCTTAAATCTTTCCCTTGATGTGTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * * *
3670311 TTCACCGTTGCGGCTTAAATCTTTCCCTTTATGTC-TCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTACT--GGA
** * * ** *
3670360 TTTACCATTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * *
3670409 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-CTTCTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTAC-TGGA
* * * * *
3670458 TTCGCCGTTGTGACTTAAACCTTTCCCTCCATATCTTCATGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * *
3670507 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACT--GGA
* * ** *
3670556 TTCGCCATTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * *
3670605 TTCGCCGTTGC-AGCTTAAATCTTTCCCTTCATG-CTTTTGAGGTACAAGG-
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTCATGTC-TTCGTGGTAC-TGGA
* * * * * *
3670654 TTCGTCATTGCTACTTAAACCTTTACCTTCATATCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
* * * *
3670703 TTCGCCATTGC-AGCTTAAATCTTTCCCTTCATGTCTTTGAGGTACAAGG-
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTCATGTCTTCGTGGTAC-TGGA
* * *
3670752 TTCGCCATTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTC-ATGTCTTCGTGGTACTGGA
* * * * *
3670801 TTCGCCGTTACGGCTTAAATTTTTCCCTTCATGTC-TCTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTAC-TGGA
* *
3670850 TTCGCCGTTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTC-ATGTCTTCGTGGTACTGGA
* * * * *
3670899 TTCGCCGTTACGGCTTAAATTTTTCCCTTCATGTC-TCTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTC-GTGGTAC-TGGA
* * *
3670948 TTCGCCGTTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTC-ATGTCTTCGTGGTACTGGA
* *
3670997 TTCGCCATTGCGGCTTAAATCTTTCCCTTCA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTCA
3671028 AATATTCATA
Statistics
Matches: 1228, Mismatches: 235, Indels: 170
0.75 0.14 0.10
Matches are distributed among these distances:
47 4 0.00
48 137 0.11
49 1023 0.83
50 63 0.05
51 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (49 bp):
TTCGCCGTTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGA
Found at i:3669541 original size:98 final size:97
Alignment explanation
Indices: 3669403--3671027 Score: 1484
Period size: 98 Copynumber: 16.6 Consensus size: 97
3669393 TGGCTTAAAT
* * * ** * *
3669403 TTTCCTTTCATG-CTTCTGAGGTA-TAAGGTTCGCCATTGCAACTTAAACCTTTCCCCTT-ATCT
1 TTTCCCTTCATGTCTTC-GTGGTACT-AGGTTCGCCGTTGCGGCTTAAATCTTT-CCCTTCATGT
* * *
3669465 CTTCGTGGTACTGGATTCGTCGTTGCGACTTAAATC
63 CTTCGAGGTACTGG-TTCGCCGTTGCGACTTAAACC
* * ** * *
3669501 TTTCCCTTCATGTC-TCTGAGGTACTAGGTTCGCCATTGCAACTTAAACCTTTCCCTT-GTGTCT
1 TTTCCCTTCATGTCTTC-GTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* * * *
3669564 TCGTGGTACTGGATTCACCGTTGCGGCTTAAATC
65 TCGAGGTACTGG-TTCGCCGTTGCGACTTAAACC
*
3669598 TTTCCCTTCATGTCTTCGTGGTACT-GGATTCGCCGTTGCTGCTTAAATCTTTCCCTTCATGTC-
1 TTTCCCTTCATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* * *
3669661 TCTGAGGTA-TAAGATTCGCCATTGCGACTTAAACA
65 TC-GAGGTACT--GGTTCGCCGTTGCGACTTAAACC
** *
3669696 TTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-CTT
1 TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTT
* *
3669760 CTAAGGTACAAGGTTCGCCGTTGCGACTTAAACC
66 C-GAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * * ** *
3669794 TTTCCCTCCATATCTTTGTGGTACT-GGATTTACCGTTGCAGCTTAAATCTTTCCCTTCATGTC-
1 TTTCCCTTCATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* *
3669857 TCTGAGGTA-TAAGGTTTGCCATTGCGACTTAAACC
65 TC-GAGGTACT--GGTTCGCCGTTGCGACTTAAACC
** * *
3669892 TTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATG-CTT
1 TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTT
* *
3669956 CTGAGGTA-TAAGGTTCACCGTTGCAACTTAAACC
66 C-GAGGTACT--GGTTCGCCGTTGCGACTTAAACC
* * ** *
3669990 TTTCCCTTCATATCTTCGTGGAACTAAATTCGTCGTTGCGGCTTAAATCTTTCCCTTCATGTC-T
1 TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTT
** * *
3670054 CTGAGGTA-TAAGGTTCGCATTTACGACGTAAACC
66 C-GAGGTACT--GGTTCGCCGTTGCGACTTAAACC
* * * *
3670088 TTTCCC-TCTGTGTCTTCTTGGTACT-GGATTCACCATTGCGGCTTAAATCTTTCCCTTCATGTC
1 TTTCCCTTC-ATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC
** * * * *
3670151 TTCCTGGTAATGGATTCGTCGTTGCGGCTTAAATC
64 TTCGAGGTACTGG-TTCGCCGTTGCGACTTAAACC
* * * * * * * *
3670186 TTTCCCTTTATGTC-TCTGAGGTACTAGGTTCGCCATTGCGACTTTAACCTTTCGCTT-GTGTCT
1 TTTCCCTTCATGTCTTC-GTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* * * * * *
3670249 TTGTGGTACTGAATTCGCCGTTACGGCTTAAATC
65 TCGAGGTACTG-GTTCGCCGTTGCGACTTAAACC
* * * *
3670283 TTTCCCTTGATGTGTTCGTGGTACT-GGATTCACCGTTGCGGCTTAAATCTTTCCCTTTATGTC-
1 TTTCCCTTCATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
** *
3670346 TCTGAGGTA-TAAGGTTTACCATTGCGACTTAAACC
65 TC-GAGGTACT--GGTTCGCCGTTGCGACTTAAACC
** *
3670381 TTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-CTT
1 TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTT
* *
3670445 CTGAGGTACAAGGTTCGCCGTTGTGACTTAAACC
66 C-GAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * *
3670479 TTTCCCTCCATATCTTCATGGTACT-GGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
1 TTTCCCTTCATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* *
3670543 TTGAGGTA-TAAGGTTCGCCATTGCGACTTAAACC
65 TCGAGGTACT--GGTTCGCCGTTGCGACTTAAACC
** * *
3670577 TTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGCAGCTTAAATCTTTCCCTTCATG-CTT
1 TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC-T
* * * * *
3670641 TTGAGGTACAAGGTTCGTCATTGCTACTTAAACC
65 TCGAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * * *
3670675 TTTACCTTCATATCTTCGTGGTACT-GGATTCGCCATTGCAGCTTAAATCTTTCCCTTCATGTCT
1 TTTCCCTTCATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCT
* * *
3670739 TTGAGGTACAAGGTTCGCCATTGCGACTTAAACC
65 TCGAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * *
3670773 TTTCCC-TCTGTGTCTTCGTGGTACT-GGATTCGCCGTTACGGCTTAAATTTTTCCCTTCATGTC
1 TTTCCCTTC-ATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC
*
3670836 -TCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACC
64 TTC-GAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * *
3670871 TTTCCC-TCTGTGTCTTCGTGGTACT-GGATTCGCCGTTACGGCTTAAATTTTTCCCTTCATGTC
1 TTTCCCTTC-ATGTCTTCGTGGTACTAGG-TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC
*
3670934 -TCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACC
64 TTC-GAGGTAC-TGGTTCGCCGTTGCGACTTAAACC
* * *
3670969 TTTCCC-TCTGTGTCTTCGTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCA
1 TTTCCCTTC-ATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCA
3671028 AATATTCATA
Statistics
Matches: 1303, Mismatches: 173, Indels: 102
0.83 0.11 0.06
Matches are distributed among these distances:
96 4 0.00
97 181 0.14
98 1097 0.84
99 21 0.02
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (97 bp):
TTTCCCTTCATGTCTTCGTGGTACTAGGTTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTT
CGAGGTACTGGTTCGCCGTTGCGACTTAAACC
Found at i:3669841 original size:196 final size:197
Alignment explanation
Indices: 3669487--3671027 Score: 1848
Period size: 196 Copynumber: 7.9 Consensus size: 197
3669477 GGATTCGTCG
* ** * * ** *
3669487 TTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTACTAGG-TTCGCCATTGCAACTTAAACC
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTC-GTGGTACT-GGATTCGCCGTTGCGGCTTAAATC
* * * * * * *
3669550 TTTCCCTT-GTGTCTTC-GTGGTAC-TGGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTC
64 TTTCCCTTCATGTCTTCTGAGGTACAAGG-TTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTC
* * *
3669612 TTCGTGGTACTGGATTCGCCGTTGCTGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGATT
128 TTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTT
3669677 CGCCA
193 CGCCA
* *
3669682 TTGCGACTTAAACATTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* ** * *
3669747 TCCCTTCATG-CTTCTAAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCATATCTTT
66 TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
* ** * *
3669811 GTGGTACTGGATTTACCGTTGCAGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTTGC
131 GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCGC
3669876 CA
196 CA
* *
3669878 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTAGATTCGCCGTTGTGGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* * * * *
3669943 TCCCTTCATG-CTTCTGAGGTATAAGGTTCACCGTTGCAACTTAAACCTTTCCCTTCATATCTTC
66 TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
* * *
3670007 GTGGAACTAAATTCGTCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCG-
131 GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCGC
3670071 CA
196 CA
* * * * * *
3670073 TTTACGACGTAAACCTTTCCCTCTGTGTCTTCTTGGTACTGGATTCACCATTGCGGCTTAAATCT
1 -TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCT
* * * *
3670138 TTCCCTTCATGTCTTCCT--GGTA-ATGGATTCGTCGTTGCGGCTTAAATCTTTCCCTTTATGTC
65 TTCCCTTCATGTCTT-CTGAGGTACAAGG-TTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTC
* * * * * * * * * *
3670200 -TCTGAGGTACTAGGTTCGCCATTGCGACTTTAACCTTTCGCTT-GTGTCTTTGTGGTACTGAA-
128 TTC-GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTA-T-AAG
*
3670262 -TTCGCCG
190 GTTCGCCA
* * * * *
3670269 TTACGGCTTAAATCTTTCCC-TTGATGTGTTCGTGGTACTGGATTCACCGTTGCGGCTTAAATCT
1 TTGCGACTTAAACCTTTCCCTTTG-TGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCT
* * ** * *
3670333 TTCCCTTTATGTC-TCTGAGGTATAAGGTTTACCATTGCGACTTAAACCTTTCCCTTTGTGTCTT
65 TTCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTT
*
3670397 CGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-CTTCTGAGGTACAAGGTTC
130 CGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC-TCTGAGGTATAAGGTTC
*
3670461 GCCG
194 GCCA
* *** * *
3670465 TTGTGACTTAAACCTTTCCCTCCATATCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* * *
3670530 TCCCTTCATGTCTT-TGAGGTATAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTGTGTCTTC
66 TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
* * *
3670594 GTGGTACTAGATTCGCCGTTGCAGCTTAAATCTTTCCCTTCATG-CTTTTGAGGTACAAGGTTCG
131 GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTC-TCTGAGGTATAAGGTTCG
*
3670658 TCA
195 CCA
* * ** * * *
3670661 TTGCTACTTAAACCTTTACCTTCATATCTTCGTGGTACTGGATTCGCCATTGCAGCTTAAATCTT
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* * *
3670726 TCCCTTCATGTCTT-TGAGGTACAAGGTTCGCCATTGCGACTTAAACCTTTCCCTCTGTGTCTTC
66 TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
* * * *
3670790 GTGGTACTGGATTCGCCGTTACGGCTTAAATTTTTCCCTTCATGTCTCTGAGGTACAAGGTTCGC
131 GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCGC
*
3670855 CG
196 CA
* * *
3670857 TTGCGACTTAAACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTACGGCTTAAATTTT
1 TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
* *
3670922 TCCCTTCATGTC-TCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCTGTGTCTTC
66 TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
*
3670986 GTGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCA
131 GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCA
3671028 AATATTCATA
Statistics
Matches: 1173, Mismatches: 147, Indels: 51
0.86 0.11 0.04
Matches are distributed among these distances:
193 2 0.00
194 6 0.01
195 215 0.18
196 939 0.80
197 9 0.01
198 2 0.00
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (197 bp):
TTGCGACTTAAACCTTTCCCTTTGTGTCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTT
TCCCTTCATGTCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTTATGTCTTC
GTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTCTGAGGTATAAGGTTCGC
CA
Found at i:3671070 original size:49 final size:48
Alignment explanation
Indices: 3670997--3671571 Score: 283
Period size: 49 Copynumber: 11.7 Consensus size: 48
3670987 TGGTACTAGA
* * * * *
3670997 TTCGCCATTGCGGCTTAAATCTTTCCCTTCAAATATTCATAGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTC-AATATTCATGGTACCGGG
* * * * *
3671046 TTCGCCGTTGCGGCCTCAACCTTTCCGATTTC-ATTTTCATGGAATCGGA
1 TTCGCCGTTGCGGCCTCAACCTTTCC--CTTCAATATTCATGGTACCGGG
** * * * *
3671095 TTTACCGTTGCAGCCTCAATCC-TTCCCAT-AATATCTGCTAAGGTACCGAG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCAATAT-T-C-ATGGTACCGGG
** * *
3671145 TTCGCAATTACGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTC-AATATTCATGGTACCGGG
* * * * *
3671194 TTCACCGTTGCGGCCTCAACCTTTACCCTTTC-ATCTTCATGGAATCGGA
1 TTCGCCGTTGCGGCCTCAACCTTT-CCC-TTCAATATTCATGGTACCGGG
* * * * **
3671243 TTTGCCGTTGTGGCCTCAATCC-TTCCCAT-AATATCTGCTAAGGTACCAAG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCAATAT-T-C-ATGGTACCGGG
** * *
3671293 TTTACCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGG
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTC-AATATTCATGGTACCGGG
* * * **
3671342 TTCGCCGTTGCAGCCTCAACCTTTCCCATTTC-ATCTTCATGGAACCGAA
1 TTCGCCGTTGCGGCCTCAACCTTTCCC--TTCAATATTCATGGTACCGGG
* ** * *
3671391 TTTGTAGTTGCGGCCTCAATCC-TTCCCAT-AATATCTACTACGGTACCGGG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCAATAT-T-C-ATGGTACCGGG
* * * * * * * *
3671441 TTCGCCGTTACGGTCTTAACCTTTCCCATTTC-ATCTTCATTGAACCAGA
1 TTCGCCGTTGCGGCCTCAACCTTTCCC--TTCAATATTCATGGTACCGGG
** ** *
3671490 TTTACCGTTGCGGCCTCAATCC-TTCCAAT-AATATCTGCTAAGGTACCGGG
1 TTCGCCGTTGCGGCCTCAA-CCTTTCCCTTCAATAT-T-C-ATGGTACCGGG
* *
3671540 TTCACCGTTGCGGCCTTAACCTTTCCCTTCAA
1 TTCGCCGTTGCGGCCTCAACCTTTCCCTTCAA
3671572 ATCTTCTTGT
Statistics
Matches: 386, Mismatches: 102, Indels: 74
0.69 0.18 0.13
Matches are distributed among these distances:
47 16 0.04
48 7 0.02
49 216 0.56
50 121 0.31
51 14 0.04
52 12 0.03
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (48 bp):
TTCGCCGTTGCGGCCTCAACCTTTCCCTTCAATATTCATGGTACCGGG
Found at i:3671159 original size:99 final size:99
Alignment explanation
Indices: 3671038--3671566 Score: 488
Period size: 99 Copynumber: 5.4 Consensus size: 99
3671028 AATATTCATA
* * *
3671038 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCGATTTCATTTTCATGGAATCGGATTTACCGT
1 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTTCATCTTCATGGAACCGGATTTACCGT
*
3671103 TGCAGCCTCAATCCTTCCCATAATATCTGCTAAG
66 TGCGGCCTCAATCCTTCCCATAATATCTGCTAAG
* ** * * * *
3671137 GTACCGAGTTCGCAATTACGGCCTCAACCTTTCCC--TTCAAATCTTCATGGTACCGGGTTCACC
1 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTTC--ATCTTCATGGAACCGGATTTACC
* * *
3671200 GTTGCGGCCTCAA-CCTTTACCC-T-TTCATCTTC-ATG
64 GTTGCGGCCTCAATCC-TT-CCCATAAT-ATCTGCTAAG
* * * * * * * * * *
3671235 GAATCGGATTTGCCGTTGTGGCCTCAATCC-TTCCCATAAT-ATCTGCTAAGGTACC-AAGTTTA
1 GTACCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCCAT-TTCATCTTC-ATGGAACCGGA-TTTA
* * * *
3671297 CCGTTGTGGCCTCAA-CCTTTCCCTTCAA-ATCTTC-ATG
62 CCGTTGCGGCCTCAATCC-TTCCCAT-AATATCTGCTAAG
* * ***
3671334 GTACCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATTTCATCTTCATGGAACCGAATTTGTAGT
1 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTTCATCTTCATGGAACCGGATTTACCGT
* *
3671399 TGCGGCCTCAATCCTTCCCATAATATCTACTACG
66 TGCGGCCTCAATCCTTCCCATAATATCTGCTAAG
* * * * *
3671433 GTACCGGGTTCGCCGTTACGGTCTTAACCTTTCCCATTTCATCTTCATTGAACCAGATTTACCGT
1 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTTCATCTTCATGGAACCGGATTTACCGT
*
3671498 TGCGGCCTCAATCCTTCCAATAATATCTGCTAAG
66 TGCGGCCTCAATCCTTCCCATAATATCTGCTAAG
* *
3671532 GTACCGGGTTCACCGTTGCGGCCTTAACCTTTCCC
1 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCC
3671567 TTCAAATCTT
Statistics
Matches: 346, Mismatches: 64, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
97 5 0.01
98 71 0.21
99 266 0.77
100 3 0.01
101 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (99 bp):
GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATTTCATCTTCATGGAACCGGATTTACCGT
TGCGGCCTCAATCCTTCCCATAATATCTGCTAAG
Found at i:3671184 original size:148 final size:147
Alignment explanation
Indices: 3671017--3671467 Score: 650
Period size: 148 Copynumber: 3.0 Consensus size: 147
3671007 CGGCTTAAAT
* * *
3671017 CTTTCCCTTCAAATATTCATAGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCGATTTCATTT
1 CTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCC-ATTTCATCT
* *
3671082 TCATGGAATCGGATTTACCGTTGCAGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCGAGTT
65 TCATGGAATCGGATTTGCCGTTGCGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCGAGTT
**
3671147 CGCAATTACGGCCTCAAC
130 CGCCGTTACGGCCTCAAC
* *
3671165 CTTTCCCTTCAAATCTTCATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTACCCTTTCATCT
1 CTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTT-CCATTTCATCT
* *
3671230 TCATGGAATCGGATTTGCCGTTGTGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCAAGTT
65 TCATGGAATCGGATTTGCCGTTGCGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCGAGTT
** **
3671295 TACCGTTGTGGCCTCAAC
130 CGCCGTTACGGCCTCAAC
*
3671313 CTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCAGCCTCAACCTTTCCCATTTCATCT
1 CTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTT-CCATTTCATCT
* * ** * * *
3671378 TCATGGAACCGAATTTGTAGTTGCGGCCTCAATCCTTCCCATAATATCTACTACGGTACCGGGTT
65 TCATGGAATCGGATTTGCCGTTGCGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCGAGTT
* *
3671443 CGCCGTTACGGTCTTAAC
130 CGCCGTTACGGCCTCAAC
3671461 CTTTCCC
1 CTTTCCC
3671468 ATTTCATCTT
Statistics
Matches: 268, Mismatches: 34, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
148 266 0.99
149 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.33
Consensus pattern (147 bp):
CTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCATTTCATCTT
CATGGAATCGGATTTGCCGTTGCGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCGAGTTC
GCCGTTACGGCCTCAAC
Found at i:3671360 original size:247 final size:247
Alignment explanation
Indices: 3671045--3671577 Score: 623
Period size: 247 Copynumber: 2.2 Consensus size: 247
3671035 ATAGTACCGG
* * * * * * **
3671045 GTTCGCCGTTGCGGCCTCAACCTTTCCGATTTC--ATTTTCATGGAATCGGATTTACCGTTGCAG
1 GTTCACCGTTGCGGCCTCAACCTTTCC--CTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCAG
* *
3671108 CCTCAATCC-TTCCCATAAT-ATCTGCTAAGGTACCGAGTTCGCAATTACGGCCTCAA-CCTTTC
64 CCTCAA-CCTTTCCCAT-ATCATCTGC-AAGGAACCGAATTCGCAATTACGGCCTCAATCC-TTC
* * * *
3671170 CCTTCAA-ATCTTC-ATGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTACCC-TTTCATCTTC
125 CCAT-AATATCTACTACGGTACCGGGTTCACCGTTACGGCCTCAACCTTT-CCCATTTCATCTTC
* * * * *
3671232 ATGGAATCGGATTTGCCGTTGTGGCCTCAATCCTTCCCATAATATCTGCTAAGGTACCAA
188 ATGGAACCAGATTTACCGTTGCGGCCTCAATCCTTCCAATAATATCTGCTAAGGTACCAA
* *
3671292 GTTTACCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCAGCC
1 GTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCAGCC
* * * * * * *
3671357 TCAACCTTTCCCATTTCATCTTCATGGAACCGAATTTGTAGTTGCGGCCTCAATCCTTCCCATAA
66 TCAACCTTTCCCATATCATCTGCAAGGAACCGAATTCGCAATTACGGCCTCAATCCTTCCCATAA
* * * *
3671422 TATCTACTACGGTACCGGGTTCGCCGTTACGGTCTTAACCTTTCCCATTTCATCTTCATTGAACC
131 TATCTACTACGGTACCGGGTTCACCGTTACGGCCTCAACCTTTCCCATTTCATCTTCATGGAACC
**
3671487 AGATTTACCGTTGCGGCCTCAATCCTTCCAATAATATCTGCTAAGGTACCGG
196 AGATTTACCGTTGCGGCCTCAATCCTTCCAATAATATCTGCTAAGGTACCAA
*
3671539 GTTCACCGTTGCGGCCTTAACCTTTCCCTTCAAATCTTC
1 GTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTC
3671578 TTGTTTTTCT
Statistics
Matches: 241, Mismatches: 37, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
245 5 0.02
246 40 0.17
247 196 0.81
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.33
Consensus pattern (247 bp):
GTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCAGCC
TCAACCTTTCCCATATCATCTGCAAGGAACCGAATTCGCAATTACGGCCTCAATCCTTCCCATAA
TATCTACTACGGTACCGGGTTCACCGTTACGGCCTCAACCTTTCCCATTTCATCTTCATGGAACC
AGATTTACCGTTGCGGCCTCAATCCTTCCAATAATATCTGCTAAGGTACCAA
Found at i:3672492 original size:14 final size:13
Alignment explanation
Indices: 3672475--3672525 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
3672465 TCTTTTTCCA
3672475 TTTTTCTATTTTTG
1 TTTTTCT-TTTTTG
3672489 TTTTTCTTTTGTT-
1 TTTTTCTTTT-TTG
*
3672502 TTTCCTCTTTTTTG
1 TTT-TTCTTTTTTG
*
3672516 TTTTTGTTTT
1 TTTTTCTTTT
3672526 GCTTTTTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 13 0.42
14 18 0.58
ACGTcount: A:0.02, C:0.10, G:0.08, T:0.80
Consensus pattern (13 bp):
TTTTTCTTTTTTG
Found at i:3672498 original size:33 final size:33
Alignment explanation
Indices: 3672461--3672553 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 33
3672451 TCTACCTCTC
*
3672461 CTTTTCTTTTTCCAT-TTTTCTATTTTTGTTTTT
1 CTTTTCTTTTTCC-TCTTTTCTATTTTTGTTTTG
* * *
3672494 CTTTTGTTTTTCCTCTTTTTTGTTTTTGTTTTG
1 CTTTTCTTTTTCCTCTTTTCTATTTTTGTTTTG
* *
3672527 CTTTTTCTTCTTCTTCTTCTTCT-TTTT
1 C-TTTTCTTTTTCCTCTT-TTCTATTTT
3672554 CTTTATTCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 1 0.02
33 28 0.57
34 17 0.35
35 3 0.06
ACGTcount: A:0.02, C:0.17, G:0.05, T:0.75
Consensus pattern (33 bp):
CTTTTCTTTTTCCTCTTTTCTATTTTTGTTTTG
Found at i:3672514 original size:28 final size:28
Alignment explanation
Indices: 3672483--3672538 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
3672473 CATTTTTCTA
3672483 TTTTTGTTTTTCTTTTG-TTTTTCCTCT
1 TTTTTGTTTTTCTTTTGCTTTTTCCTCT
* *
3672510 TTTTTGTTTTTGTTTTGCTTTTTCTTCT
1 TTTTTGTTTTTCTTTTGCTTTTTCCTCT
3672538 T
1 T
3672539 CTTCTTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.00, C:0.12, G:0.09, T:0.79
Consensus pattern (28 bp):
TTTTTGTTTTTCTTTTGCTTTTTCCTCT
Found at i:3673396 original size:15 final size:16
Alignment explanation
Indices: 3673372--3673402 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
3673362 CTTTTTCTTC
3673372 CTTTTCTTTCTTTTTT
1 CTTTTCTTTCTTTTTT
3673388 CTTTT-TTTCTTTTTT
1 CTTTTCTTTCTTTTTT
3673403 ATGGGGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
CTTTTCTTTCTTTTTT
Found at i:3676240 original size:23 final size:23
Alignment explanation
Indices: 3676170--3676363 Score: 180
Period size: 23 Copynumber: 8.3 Consensus size: 23
3676160 ACGGAACAAG
* *
3676170 CAGAGAGTAC-CAAAGTACT-AA
1 CAGAGAGCACACAAAGTGCTAAA
* *
3676191 CAGAGAGCACA-TAAGTGCTGGGCAA
1 CAGAGAGCACACAAAGTGCT---AAA
*
3676216 CAGAGAGCACACACAGTGCTAAA
1 CAGAGAGCACACAAAGTGCTAAA
* * *
3676239 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTGCTAAA
* *
3676262 CGGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
3676285 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
3676308 CAGAGAGCACACACAGTGCTAATAA
1 CAGAGAGCACACAAAGTGCT-A-AA
* *
3676333 CAGAGAGCACGA-GACGTGCTAAA
1 CAGAGAGCAC-ACAAAGTGCTAAA
3676356 CAGAGAGC
1 CAGAGAGC
3676364 GCGCTAGTGT
Statistics
Matches: 145, Mismatches: 19, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
21 15 0.10
23 92 0.63
24 2 0.01
25 29 0.20
26 7 0.05
ACGTcount: A:0.42, C:0.22, G:0.24, T:0.12
Consensus pattern (23 bp):
CAGAGAGCACACAAAGTGCTAAA
Found at i:3676289 original size:69 final size:68
Alignment explanation
Indices: 3676170--3676363 Score: 205
Period size: 69 Copynumber: 2.8 Consensus size: 68
3676160 ACGGAACAAG
* *
3676170 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGT
1 CAGAGAGTACACAAAGTACTAATCAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACAAAGT
3676233 GCTAAA
63 GCTAAA
*
3676239 CAGAGAGTACACAAAGTACTAATCGGAGAGCACACAAAGTGCT-AATCAGAGAGCACACAAAGTG
1 CAGAGAGTACACAAAGTACTAATCAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACAAAGTG
*
3676303 CTAAT
64 CTAAA
* * * * * *
3676308 CAGAGAGCACACACAGTGCTAATAACAGAGAGCACGAGACGTGCTAAACAGAGAGC
1 CAGAGAGTACACAAAGTACTAAT--CAGAGAGCAC-AAAAGTGCTGAACAGAGAGC
3676364 GCGCTAGTGT
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
68 2 0.02
69 51 0.48
70 11 0.10
71 33 0.31
72 10 0.09
ACGTcount: A:0.42, C:0.22, G:0.24, T:0.12
Consensus pattern (68 bp):
CAGAGAGTACACAAAGTACTAATCAGAGAGCACAAAAGTGCTGAACAGAGAGCACACAAAGTGCT
AAA
Found at i:3680407 original size:30 final size:29
Alignment explanation
Indices: 3680367--3680653 Score: 155
Period size: 30 Copynumber: 9.8 Consensus size: 29
3680357 GGAAGTTTAA
3680367 GGGT-AAAATGGTAATTTTGGAAAAATTG
1 GGGTCAAAATGGTAATTTTGGAAAAATTG
* *
3680395 GGGTCAAAAATGG-AATTTTTGAAAATTTAG
1 GGGTC-AAAATGGTAATTTTGGAAAAATT-G
*
3680425 GGGT-AAAATGGTAATTTTGGAAAAATTA
1 GGGTCAAAATGGTAATTTTGGAAAAATTG
* * **
3680453 TGGTCAAAAATGG-AGTTTTTGG-AAGTTTGG
1 GGGTC-AAAATGGTA-ATTTTGGAAAAATT-G
* *
3680483 GGGT-AAAATGGTAATATTTGGAAAGATCG
1 GGGTCAAAATGGTAAT-TTTGGAAAAATTG
** *
3680512 GGGTCAAAAT-GTAATTTTTGGAAAGTTTAA
1 GGGTCAAAATGGTAA-TTTTGGAAAAATT-G
** * **
3680542 GTTTCAAAAT-GTGATTTTTGGAAAGTTTAG
1 GGGTCAAAATGGT-AATTTTGGAAAAATT-G
* * * *
3680572 GCGTTAAAAT-GTAATTTTTGAAAAGTTTG
1 GGGTCAAAATGGTAATTTTGGAAAA-ATTG
** * *
3680601 GCTTCAAAAT-GTAATTTTTGGAAAGATCG
1 GGGTCAAAATGGTAA-TTTTGGAAAAATTG
3680630 AGGGTCAAAAT-GTAATTTTGGAAA
1 -GGGTCAAAATGGTAATTTTGGAAA
3680654 GTTCGAGGGT
Statistics
Matches: 206, Mismatches: 35, Indels: 35
0.75 0.13 0.13
Matches are distributed among these distances:
28 22 0.11
29 89 0.43
30 94 0.46
31 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.35
Consensus pattern (29 bp):
GGGTCAAAATGGTAATTTTGGAAAAATTG
Found at i:3680408 original size:58 final size:58
Alignment explanation
Indices: 3680340--3680542 Score: 273
Period size: 58 Copynumber: 3.5 Consensus size: 58
3680330 GAGTTCGGGA
*
3680340 TCAAAAATGGAGTTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTGGAAAAATTGGGG
1 TCAAAAATGGAATTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTGGAAAAATTGGGG
* * * **
3680398 TCAAAAATGGAATTTTTGAAAATTTAGGGGTAAAATGGTAATTTTGGAAAAATTATGG
1 TCAAAAATGGAATTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTGGAAAAATTGGGG
* ** * *
3680456 TCAAAAATGGAGTTTTTGGAAGTTTGGGGGTAAAATGGTAATATTTGGAAAGATCGGGG
1 TCAAAAATGGAATTTTTGGAAGTTTAAGGGTAAAATGGTAAT-TTTGGAAAAATTGGGG
*
3680515 TC-AAAATGTAATTTTTGGAAAGTTTAAG
1 TCAAAAATGGAATTTTTGG-AAGTTTAAG
3680543 TTTCAAAATG
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
58 104 0.83
59 21 0.17
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.33
Consensus pattern (58 bp):
TCAAAAATGGAATTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTGGAAAAATTGGGG
Found at i:3680536 original size:29 final size:29
Alignment explanation
Indices: 3680343--3680677 Score: 222
Period size: 29 Copynumber: 11.4 Consensus size: 29
3680333 TTCGGGATCA
* * *
3680343 AAAATGGAGTTTTTGG-AAGTTTAAGGGT-
1 AAAATGTAATTTTTGGAAAG-TTAGGGGTC
*
3680371 AAAATGGTAA-TTTTGGAAAAATT-GGGGTC
1 AAAAT-GTAATTTTTGG-AAAGTTAGGGGTC
* * *
3680400 AAAAATGGAATTTTTGAAAATTTAGGGGT-
1 -AAAATGTAATTTTTGGAAAGTTAGGGGTC
* *
3680429 AAAATGGTAA-TTTTGGAAAAATTA-TGGTC
1 AAAAT-GTAATTTTTGG-AAAGTTAGGGGTC
* * *
3680458 AAAAATGGAGTTTTTGG-AAGTTTGGGGGT-
1 -AAAATGTAATTTTTGGAAAG-TTAGGGGTC
* * *
3680487 AAAATGGTAATATTTGGAAAGATCGGGGTC
1 AAAAT-GTAATTTTTGGAAAGTTAGGGGTC
* **
3680517 AAAATGTAATTTTTGGAAAGTTTAAGTTTC
1 AAAATGTAATTTTTGGAAAG-TTAGGGGTC
* * *
3680547 AAAATGTGATTTTTGGAAAGTTTAGGCGTT
1 AAAATGTAATTTTTGGAAAG-TTAGGGGTC
* * **
3680577 AAAATGTAATTTTTGAAAAGTTTGGCTTC
1 AAAATGTAATTTTTGGAAAGTTAGGGGTC
* *
3680606 AAAATGTAATTTTTGGAAAGATCGAGGGTC
1 AAAATGTAATTTTTGGAAAGTTAG-GGGTC
*
3680636 AAAATGTAA-TTTTGGAAAGTTCGAGGGTC
1 AAAATGTAATTTTTGGAAAGTTAG-GGGTC
*
3680665 GAAATGTAATTTT
1 AAAATGTAATTTT
3680678 CAAAAGATTG
Statistics
Matches: 243, Mismatches: 44, Indels: 38
0.75 0.14 0.12
Matches are distributed among these distances:
28 35 0.14
29 107 0.44
30 101 0.42
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAAGTTAGGGGTC
Found at i:3680670 original size:59 final size:60
Alignment explanation
Indices: 3680487--3680677 Score: 228
Period size: 59 Copynumber: 3.2 Consensus size: 60
3680477 GTTTGGGGGT
* * *
3680487 AAAATGGTAATATTTGGAAAGATCG-GGGTCAAAATGTAATTTTTGGAAAGTTTAAGTTTC
1 AAAAT-GTAATTTTTGGAAAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCTTC
* ** * *
3680547 AAAATGTGATTTTTGGAAAG-TTTAGGCGTTAAAATGTAATTTTTGAAAAGTTTG-GCTTC
1 AAAATGTAATTTTTGGAAAGATCGAGG-GTCAAAATGTAATTTTTGGAAAGTTTGAGCTTC
* **
3680606 AAAATGTAATTTTTGGAAAGATCGAGGGTCAAAATGTAA-TTTTGGAAAGTTCGAGGGTC
1 AAAATGTAATTTTTGGAAAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCTTC
*
3680665 GAAATGTAATTTT
1 AAAATGTAATTTT
3680678 CAAAAGATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
58 13 0.12
59 64 0.58
60 33 0.30
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (60 bp):
AAAATGTAATTTTTGGAAAGATCGAGGGTCAAAATGTAATTTTTGGAAAGTTTGAGCTTC
Found at i:3682365 original size:17 final size:17
Alignment explanation
Indices: 3682343--3682410 Score: 73
Period size: 17 Copynumber: 4.0 Consensus size: 17
3682333 CACTTTTAAT
*
3682343 TAAATTTTAATTTAAAA
1 TAAATTTAAATTTAAAA
* * *
3682360 TAAATTTAAACTCAAAG
1 TAAATTTAAATTTAAAA
*
3682377 TAAGTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* *
3682394 TAAAATAAAATTTAAAA
1 TAAATTTAAATTTAAAA
3682411 ACAATCCACA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:3683614 original size:20 final size:20
Alignment explanation
Indices: 3683589--3683630 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
3683579 TACATGTTTC
3683589 TTTGTACTTTTGTTTCAATT
1 TTTGTACTTTTGTTTCAATT
3683609 TTTGTACTTTTGTTTCAATT
1 TTTGTACTTTTGTTTCAATT
3683629 TT
1 TT
3683631 GGCATACCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.10, G:0.10, T:0.67
Consensus pattern (20 bp):
TTTGTACTTTTGTTTCAATT
Found at i:3684842 original size:29 final size:30
Alignment explanation
Indices: 3684804--3684861 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
3684794 GAGGAACTTA
**
3684804 GGGATCAAAATTGAA-TTTTTTGAAAATTT
1 GGGATCAAAATCAAACTTTTTTGAAAATTT
*
3684833 GGGATTAAAATCAAACTTTTTTGAAAATT
1 GGGATCAAAATCAAACTTTTTTGAAAATT
3684862 GAGGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.40
Consensus pattern (30 bp):
GGGATCAAAATCAAACTTTTTTGAAAATTT
Found at i:3684896 original size:29 final size:29
Alignment explanation
Indices: 3684864--3684966 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
3684854 TGAAAATTGA
* *
3684864 GGGTAAAATGGTAATTTTTGGATGCTCGG
1 GGGTAAAATGGTGATTTTTGGATGTTCGG
*
3684893 GGGTAAAATGGTGATTTTTGGAAGTTCGAG
1 GGGTAAAATGGTGATTTTTGGATGTTCG-G
** *
3684923 GGCAAAAAT-GTGATTTTTGGATGTTCGA
1 GGGTAAAATGGTGATTTTTGGATGTTCGG
3684951 GGGTAAAAAT-GTGATT
1 GGGT-AAAATGGTGATT
3684967 ATTGTAAGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 2 0.03
29 53 0.84
30 8 0.13
ACGTcount: A:0.28, C:0.05, G:0.33, T:0.34
Consensus pattern (29 bp):
GGGTAAAATGGTGATTTTTGGATGTTCGG
Found at i:3684911 original size:58 final size:59
Alignment explanation
Indices: 3684849--3685058 Score: 153
Period size: 58 Copynumber: 3.6 Consensus size: 59
3684839 AAAATCAAAC
* *
3684849 TTTTTTGAAAATT-GAGGG-TAAAATGGTAATTTTTGGATGCTCGGGGGT-AAAATGGTGA
1 TTTTTTGAAAATTCGAGGGCAAAAAT-GTAATTTTTGGATGCTCGAGGGTAAAAAT-GTGA
* * * *
3684907 -TTTTTGGAAGTTCGAGGGCAAAAATGTGATTTTTGGATGTTCGAGGGTAAAAATGTGA
1 TTTTTTGAAAATTCGAGGGCAAAAATGTAATTTTTGGATGCTCGAGGGTAAAAATGTGA
* * ** * * * * * * * *
3684965 -TTATTGTAAGCTCAAGGGCAAAAACGTAATTTTTGAGAAGTTTGGGGGTAATAATGTAA
1 TTTTTTGAAAATTCGAGGGCAAAAATGTAATTTTTG-GATGCTCGAGGGTAAAAATGTGA
* * * *
3685024 TTTTTTGAAATTTAG-GGGCAAAAATATAAATTTTG
1 TTTTTTGAAAATTCGAGGGCAAAAATGTAATTTTTG
3685059 ATAAGTTCAA
Statistics
Matches: 121, Mismatches: 26, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
57 10 0.08
58 58 0.48
59 45 0.37
60 8 0.07
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (59 bp):
TTTTTTGAAAATTCGAGGGCAAAAATGTAATTTTTGGATGCTCGAGGGTAAAAATGTGA
Found at i:3684982 original size:29 final size:29
Alignment explanation
Indices: 3684897--3685090 Score: 131
Period size: 29 Copynumber: 6.6 Consensus size: 29
3684887 GCTCGGGGGT
3684897 AAAATGGTGATTTTTGGAAGTTCGAGGGCA
1 AAAAT-GTGATTTTTGGAAGTTCGAGGGCA
* *
3684927 AAAATGTGATTTTTGGATGTTCGAGGGTA
1 AAAATGTGATTTTTGGAAGTTCGAGGGCA
* * * *
3684956 AAAATGTGATTATTGTAAGCTCAAGGGCA
1 AAAATGTGATTTTTGGAAGTTCGAGGGCA
* * * * *
3684985 AAAACGTAATTTTTGAGAAGTTTGGGGGTA
1 AAAATGTGATTTTTG-GAAGTTCGAGGGCA
* * * * *
3685015 ATAATGTAATTTTTTGAAATT-TAGGGGCA
1 AAAATGTGATTTTTGGAAGTTCGA-GGGCA
* * * * *
3685044 AAAATATAAATTTTGATAAGTTC-AAGGCA
1 AAAATGTGATTTTTG-GAAGTTCGAGGGCA
* *
3685073 ATAATGTAATTTTTGGAA
1 AAAATGTGATTTTTGGAA
3685091 TGTTTATGGG
Statistics
Matches: 125, Mismatches: 35, Indels: 10
0.74 0.21 0.06
Matches are distributed among these distances:
28 2 0.02
29 93 0.74
30 30 0.24
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.35
Consensus pattern (29 bp):
AAAATGTGATTTTTGGAAGTTCGAGGGCA
Found at i:3685126 original size:30 final size:29
Alignment explanation
Indices: 3685092--3685188 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 29
3685082 TTTTTGGAAT
*
3685092 GTTTATGGGTCAAAATATAATTTCTAGAAA
1 GTTTA-GGGTTAAAATATAATTTCTAGAAA
* *
3685122 GTTTAGGGGTTAAAACATAATTT-TGGAATA
1 GTTTA-GGGTTAAAATATAATTTCTAGAA-A
* *
3685152 GTTTAGATGTTAAAATATGATTTCTA-AAA
1 GTTTAG-GGTTAAAATATAATTTCTAGAAA
*
3685181 GTTCAGGG
1 GTTTAGGG
3685189 ACCTTCTGGG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
28 1 0.02
29 11 0.20
30 41 0.76
31 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (29 bp):
GTTTAGGGTTAAAATATAATTTCTAGAAA
Found at i:3685144 original size:88 final size:89
Alignment explanation
Indices: 3684971--3685146 Score: 198
Period size: 88 Copynumber: 2.0 Consensus size: 89
3684961 GTGATTATTG
* * * *
3684971 TAAGCTCAAGGGCAAAAACGTAATTTTTGAGAAGTTTGGGGGTAATAATGTAATTTTTTGAAATT
1 TAAGCTCAAGGGCAAAAACGTAATTTTTGAGAAGTTTAGGGGTAATAATATAATTTCTAGAAATT
*
3685036 TAGGGGCAAAAATATAAATTTTGA
66 TAGGGGCAAAAACATAAATTTTGA
* * * *
3685060 TAAGTTCAA-GGCAATAATGTAATTTTTG-GAATGTTTATGGGTCAA-AATATAATTTCTAGAAA
1 TAAGCTCAAGGGCAAAAACGTAATTTTTGAGAA-GTTTAGGGGT-AATAATATAATTTCTAGAAA
**
3685122 GTTTAGGGGTTAAAACAT-AATTTTG
64 -TTTAGGGGCAAAAACATAAATTTTG
3685147 GAATAGTTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
87 3 0.04
88 46 0.63
89 24 0.33
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.36
Consensus pattern (89 bp):
TAAGCTCAAGGGCAAAAACGTAATTTTTGAGAAGTTTAGGGGTAATAATATAATTTCTAGAAATT
TAGGGGCAAAAACATAAATTTTGA
Found at i:3687645 original size:210 final size:209
Alignment explanation
Indices: 3687284--3688075 Score: 1077
Period size: 208 Copynumber: 3.8 Consensus size: 209
3687274 AGAAATACGG
* * * *
3687284 ATTTGGTTCACTTCTCTGCATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTTA
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCA
* * * *
3687349 GTACCTCATCAGGAAGCTAAGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCGTTGATTTCG
66 ATACCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTT-GTTTCATTGATTTGG
* * * * *
3687414 TCTACTTCTTAGTATCTCATCAGGCAGATGACTGCATCACTTGTTTCAATTCGC-TCTCTGTATC
130 TATACTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTGTATC
3687478 TCATCAGGAAGATGA
195 TCATCAGGAAGATGA
* * *
3687493 ATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTGACCATTTTATTGCTTCGACTATGCTTCTC
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGCTTCGAC-CTGCTTCTC
*
3687558 AATATCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTTGGCTTT-ATTGATTT
65 AATACCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTT-G-TTTCATTGATTT
* *
3687622 GGTCTACTTCTCAATATCTCATCAGGAAGATGACCACATCACTTGTTTCAATTCGCTTCTCTGTA
128 GGTATACTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTGTA
*
3687687 TCTCATAAGGAAGATGA
193 TCTCATCAGGAAGATGA
* *
3687704 ATTTGGTCCACTTCTCACTATCTCATCAGGAAGCTGACCATTTTATTGCTTCGACCTGCTTCTCA
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCA
* * * * * * **
3687769 ATATCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCATATTGAGCCTTATTTTATTGATTCAGT
66 ATACCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTTGTTTCATTGATTTGGT
** * * *
3687834 ATACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTT-AATCCACTTCACTGTATCT
131 ATACTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTGTATCT
** *
3687898 CATCAGGAAGGCGG
196 CATCAGGAAGATGA
* *
3687912 ATTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCA
1 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCA
** * * * *
3687977 GCACCTCATCAGGAAGCTGGGGTTCAAAGTATCGCTCACATTGAGCTTTGTTTCATTGATTTGGT
66 ATACCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTTGTTTCATTGATTTGGT
* * * *
3688042 ATGCTTCTCTATATCTCATTAGGAAGACGACCGC
131 ATACTTCTCAATATCTCATCAGGAAGATGACCGC
3688076 TTTATTGCTT
Statistics
Matches: 521, Mismatches: 58, Indels: 9
0.89 0.10 0.02
Matches are distributed among these distances:
208 173 0.33
209 100 0.19
210 168 0.32
211 80 0.15
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (209 bp):
ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTCA
ATACCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATCGAGCTTTGTTTCATTGATTTGGT
ATACTTCTCAATATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTGTATCT
CATCAGGAAGATGA
Found at i:3688141 original size:123 final size:123
Alignment explanation
Indices: 3687911--3688198 Score: 396
Period size: 123 Copynumber: 2.3 Consensus size: 123
3687901 CAGGAAGGCG
** **
3687911 GATTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCATTTTATTGCTTCGACCTGCTTCTC
1 GATTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTTCGACCTGCTTCTC
* * ** *
3687976 AGCACCTCATCAGGAAGCTGGGGTTCAAAGTATCGCTCACATTGAGCTTTGTTTCATT
66 AACACCTCATCAGGAAGCTAGAATTCAAAGTATCACTCACATTGAGCTTTGTTTCATT
* * *
3688034 GATTTGGTATGCTTCTCTATATCTCATTAGGAAGACGACCGCTTTATTGCTTCGACCTGCTTCTC
1 GATTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTTCGACCTGCTTCTC
* * ** * * *
3688099 AATATCTCATCAGGAAGCTAGAATTTGAAGTTTCACTTACATTGGGCTTTGTTTCATT
66 AACACCTCATCAGGAAGCTAGAATTCAAAGTATCACTCACATTGAGCTTTGTTTCATT
*
3688157 GATTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGC
1 GATTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGC
3688199 ATCACTATTT
Statistics
Matches: 142, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
123 142 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (123 bp):
GATTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTTCGACCTGCTTCTC
AACACCTCATCAGGAAGCTAGAATTCAAAGTATCACTCACATTGAGCTTTGTTTCATT
Found at i:3688219 original size:123 final size:123
Alignment explanation
Indices: 3688014--3688238 Score: 308
Period size: 123 Copynumber: 1.8 Consensus size: 123
3688004 AGTATCGCTC
* * * *
3688014 ACATTGAGCTTTGTTTCATTGATTTGGTATGCTTCTCTATATCTCATTAGGAAGACGACCGCTTT
1 ACATTGAGCTTTGTTTCATTGATTTGGTATACTTCTCTATATCTCATCAGGAAGACGACCGCATC
* * * *
3688079 ATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTAGAATTTGAAGTTTCACTT
66 ACTACTTCAACCTGCTTCTCAATATCTCATCAAGAAGCTAGAATTTGAAGTTTCACTT
* * *
3688137 ACATTGGGCTTTGTTTCATTGATTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCATC
1 ACATTGAGCTTTGTTTCATTGATTTGGTATACTTCTCTATATCTCATCAGGAAGACGACCGCATC
* **
3688202 ACTATTTCAATCC-GCTTCTCTGTATCTCATCAAGAAG
66 ACTACTTCAA-CCTGCTTCTCAATATCTCATCAAGAAG
3688239 ACAGGTTTGG
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 85 0.98
124 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (123 bp):
ACATTGAGCTTTGTTTCATTGATTTGGTATACTTCTCTATATCTCATCAGGAAGACGACCGCATC
ACTACTTCAACCTGCTTCTCAATATCTCATCAAGAAGCTAGAATTTGAAGTTTCACTT
Found at i:3688966 original size:50 final size:50
Alignment explanation
Indices: 3688857--3689266 Score: 345
Period size: 50 Copynumber: 8.5 Consensus size: 50
3688847 CATCGGGTTC
* ** *
3688857 CCTCAACCTTTCCCATCACAT-TTC-ATGGTACAGAATTCGCCGTTACGG
1 CCTCAACCTTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
*
3688905 CCTCAATCTTTCCCATCACATCTTCTGA-GGTACCGGGTTCGCCGTTGCGG
1 CCTCAACCTTTCCCATCACATCTTCT-ATGGTACCGGGTTCGCCGTTGCGG
** * * * **
3688955 AATCAACCTTTCCCTTCAAATCTTCT-TAGGTACCGAGTTTACCGTTGCGG
1 CCTCAACCTTTCCCATCACATCTTCTAT-GGTACCGGGTTCGCCGTTGCGG
* * * * *
3689005 CCTCAACCTTTTCCCTTAAAATCTTC-ATGG---C---ATCG-GGTT-C--
1 CCTCAACC-TTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
* **
3689045 CCTCAACCTTTCCCATCACAT-TT-GATGGTACCGAATTCGCCGTTGCGG
1 CCTCAACCTTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
* * *
3689093 CCTCAATCTTTCCCATCTCATCTTCTAAGGTACCGGGTTCGCCGTTGCGG
1 CCTCAACCTTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
* * * *
3689143 CCTCAACCTTTCCCTTTACATCCTC-ATGGTACCGGGTTCGCCGTTGCGA
1 CCTCAACCTTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
* * * *
3689192 CCTTAAACTTTCCCATCACATCTTCT-TAGGTACCGGGTTCACCGTTGTGG
1 CCTCAACCTTTCCCATCACATCTTCTAT-GGTACCGGGTTCGCCGTTGCGG
* * *
3689242 TCTCAACCTTTCCCTTTACATCTTC
1 CCTCAACCTTTCCCATCACATCTTC
3689267 ATGTTTTTCT
Statistics
Matches: 289, Mismatches: 51, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
38 6 0.02
39 10 0.03
40 8 0.03
41 1 0.00
42 1 0.00
43 3 0.01
44 4 0.01
45 3 0.01
46 1 0.00
47 1 0.00
48 39 0.13
49 48 0.17
50 146 0.51
51 18 0.06
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (50 bp):
CCTCAACCTTTCCCATCACATCTTCTATGGTACCGGGTTCGCCGTTGCGG
Found at i:3689061 original size:188 final size:188
Alignment explanation
Indices: 3688741--3689158 Score: 676
Period size: 188 Copynumber: 2.2 Consensus size: 188
3688731 ATCTTGTTTC
* * * *
3688741 CTAAGGTACCGGGTTCACCGTTACGGCCTCAATCTTTCCCTTCATATCTTCTTAGGTACCAGGTT
1 CTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCTTAGGTACCAGGTT
* *
3688806 TGCCATTACGGCCCCAACCTTTTCCCTTAAAATCTTCGTGGCATCGGGTTCCCTCAACCTTTCCC
66 TACCATTACGGCCCCAACCTTTTCCCTTAAAATCTTCATGGCATCGGGTTCCCTCAACCTTTCCC
3688871 ATCACATTTCATGGTACAGAATTCGCCGTTACGGCCTCAATCTTTCCCATCACATCTT
131 ATCACATTTCATGGTACAGAATTCGCCGTTACGGCCTCAATCTTTCCCATCACATCTT
* **
3688929 CTGAGGTACCGGGTTCGCCGTTGCGGAATCAACCTTTCCCTTCAAATCTTCTTAGGTACC-GAGT
1 CTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCTTAGGTACCAG-GT
* * *
3688993 TTACCGTTGCGGCCTCAACCTTTTCCCTTAAAATCTTCATGGCATCGGGTTCCCTCAACCTTTCC
65 TTACCATTACGGCCCCAACCTTTTCCCTTAAAATCTTCATGGCATCGGGTTCCCTCAACCTTTCC
* * * *
3689058 CATCACATTTGATGGTACCGAATTCGCCGTTGCGGCCTCAATCTTTCCCATCTCATCTT
130 CATCACATTTCATGGTACAGAATTCGCCGTTACGGCCTCAATCTTTCCCATCACATCTT
3689117 CTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTT
1 CTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTT
3689159 TACATCCTCA
Statistics
Matches: 210, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
187 1 0.00
188 209 1.00
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (188 bp):
CTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCTTAGGTACCAGGTT
TACCATTACGGCCCCAACCTTTTCCCTTAAAATCTTCATGGCATCGGGTTCCCTCAACCTTTCCC
ATCACATTTCATGGTACAGAATTCGCCGTTACGGCCTCAATCTTTCCCATCACATCTT
Found at i:3689086 original size:138 final size:138
Alignment explanation
Indices: 3688905--3689181 Score: 351
Period size: 138 Copynumber: 2.0 Consensus size: 138
3688895 GCCGTTACGG
* ** *
3688905 CCTCAATCTTTCCCATCACATCTTCTGAGGTACCGGGTTCGCCGTTGCGGAATCAACCTTTCCCT
1 CCTCAACCTTTCCCATCACA-CTTCTGAGGTACCGAATTCGCCGTTGCGGAATCAACCTTTCCCA
* * *
3688970 TCAAATCTTCTTAGGTACCGAGTTTACCGTTGCGGCCTCAACCTTTTCCCTTAAAATCTTCATGG
65 TCAAATCTTCTAAGGTACCGAGTTCACCGTTGCGGCCTCAACC-TTTCCCTTAAAATCCTCATGG
*
3689035 CATCGGGTTC
129 CACCGGGTTC
** *
3689045 CCTCAACCTTTCCCATCACA-TT-TGATGGTACCGAATTCGCCGTTGCGGCCTCAATCTTTCCCA
1 CCTCAACCTTTCCCATCACACTTCTGA-GGTACCGAATTCGCCGTTGCGGAATCAACCTTTCCCA
** * * * * *
3689108 TCTCATCTTCTAAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTACATCCTCATGGT
65 TCAAATCTTCTAAGGTACCGAGTTCACCGTTGCGGCCTCAACCTTTCCCTTAAAATCCTCATGGC
3689173 ACCGGGTTC
130 ACCGGGTTC
3689182 GCCGTTGCGA
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
137 29 0.25
138 70 0.59
140 19 0.16
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.32
Consensus pattern (138 bp):
CCTCAACCTTTCCCATCACACTTCTGAGGTACCGAATTCGCCGTTGCGGAATCAACCTTTCCCAT
CAAATCTTCTAAGGTACCGAGTTCACCGTTGCGGCCTCAACCTTTCCCTTAAAATCCTCATGGCA
CCGGGTTC
Done.